Bovidae	ANCESTRAL SPECIES	12	ENSGT00950000182787.E.d.e.b	ENSGT00940000161682	ENSGT00390000006780 #7	ENSGT00940000158323 #8	ENSGT00940000158490	ENSGT00390000011072.c.a #9	ENSGT00440000033985 #11	ENSGT00940000154014.a #12	ENSGT00900000143452 #13	ENSGT00940000158294 #14	ENSGT01100000263600 #15	ENSGT00390000014996 #16	ENSGT00550000074870.b #17	ENSGT00390000014722 #18	ENSGT00940000155925 #20	ENSGT00940000157116 #22	ENSGT00940000157866 #23	ENSGT00390000002582 #24	ENSGT00940000157852 #25	ENSGT00940000155142 #26	ENSGT00390000011176 #27	ENSGT00940000156175 #28	ENSGT00390000000481 #29	ENSGT00950000182882.A.b.a #30	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.a.a ##37	ENSGT00940000155472.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480	ENSGT00950000183004.a.b.a.a
Caprinae	ANCESTRAL SPECIES	10	ENSGT00950000182787.E.d.e.b	ENSGT00940000161682	ENSGT00390000006780 #7	ENSGT00940000158323 #8	ENSGT00940000158490	ENSGT00390000011072.c.a #9	ENSGT00440000033985 #11	ENSGT00940000154014.a #12	ENSGT00900000143452 #13	ENSGT00940000158294 #14	ENSGT01100000263600 #15	ENSGT00390000014996 #16	ENSGT00550000074870.b #17	ENSGT00390000014722 #18	ENSGT00940000155925 #20	ENSGT00940000157116 #22	ENSGT00940000157866 #23	ENSGT00390000002582 #24	ENSGT00940000157852 #25	ENSGT00940000155142 #26	ENSGT00390000011176 #27	ENSGT00940000156175 #28	ENSGT00390000000481 #29	ENSGT00950000182882.A.b.a #30	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b ##37	ENSGT00940000153143.a.a.f.e.a.b #32	ENSGT00940000153143.a.a.f.e.a.a.a #33	ENSGT00940000153143.a.b.b.a.b.d.b.b.f.b.b #34	ENSGT00940000153143.a.a.f.e.b.b #35	ENSGT00950000185265 #36	ENSGT00940000153143.a.b.b.a.b.d.a #37
Rambouillet Sheep	MODERN SPECIES	20	POLD2 (ENSOARG00020008736) #7	AEBP1 (ENSOARG00020008818) #8	BLVRA (ENSOARG00020008976) #9	ENSOARG00020009019 #10	COA1 (ENSOARG00020009061) #11	STK17A (ENSOARG00020009115) #12	ENSOARG00020009157 #13	HECW1 (ENSOARG00020009226) #14	ENSOARG00020010002 #15	MRPL32 (ENSOARG00020010057) #16	ENSOARG00020010111 #17	C7orf25 (ENSOARG00020010245) #18	ENSOARG00020010281 #19	GLI3 (ENSOARG00020010338) #20	ENSOARG00020000108 #21	INHBA (ENSOARG00020000159) #22	SUGCT (ENSOARG00020000282) #23	MPLKIP (ENSOARG00020000391) #24	CDK13 (ENSOARG00020000425) #25	RALA (ENSOARG00020000572) #26	ENSOARG00020000581 #27	POU6F2 (ENSOARG00020000606) #28	VPS41 (ENSOARG00020000815) #29	AMPH (ENSOARG00020001336) #30	ENSOARG00020001937 #31	ENSOARG00020001954 #32	ENSOARG00020001968 #33	ENSOARG00020001983 #34	ENSOARG00020002001 #35	ENSOARG00020002006 #36	ENSOARG00020002009 #37
Goat	MODERN SPECIES	23	GCK (ENSCHIG00000015555)	MYL7 (ENSCHIG00000022014)	POLD2 (ENSCHIG00000009706) #7	AEBP1 (ENSCHIG00000019312) #8	POLM (ENSCHIG00000022903)	ENSCHIG00000019345 #9	COA1 (ENSCHIG00000025366) #11	STK17A (ENSCHIG00000012894) #12	ENSCHIG00000022757 #13	HECW1 (ENSCHIG00000018639) #14	MRPL32 (ENSCHIG00000026167) #16	ENSCHIG00000012524 ##17	C7orf25 (ENSCHIG00000009068) #18	ENSCHIG00000012804	GLI3 (ENSCHIG00000015297) #20	INHBA (ENSCHIG00000025901) #22	SUGCT (ENSCHIG00000017599) #23	MPLKIP (ENSCHIG00000021871) #24	ENSCHIG00000022322	CDK13 (ENSCHIG00000022113) #25	RALA (ENSCHIG00000013549) #26	YAE1 (ENSCHIG00000016002) #27	ENSCHIG00000016882 #28	ENSCHIG00000020600 #28	VPS41 (ENSCHIG00000005959) #29	ENSCHIG00000011903 #31	AMPH (ENSCHIG00000020495) #30	ENSCHIG00000013794 ##37	ENSCHIG00000018076 #34	ENSCHIG00000007301 #37	LSM8 (ENSCHIG00000014201)
Bovinae	ANCESTRAL SPECIES	8	ENSGT00390000015164.s	ENSGT00950000182787.E.d.e.b	ENSGT00940000161682	ENSGT00390000006780 #7	ENSGT00940000158323 #8	ENSGT00940000158490	ENSGT00390000011072.c.a #9	ENSGT00440000033985 #11	ENSGT00940000154014.a #12	ENSGT00940000158294 #14	ENSGT01100000263600 #15	ENSGT00390000014996 #16	ENSGT00550000074870.b #17	ENSGT00390000014722 #18	ENSGT00940000155925 #20	ENSGT00940000157116 #22	ENSGT00940000157866 #23	ENSGT00390000002582 #24	ENSGT00940000157852 #25	ENSGT00940000159695.h	ENSGT00940000155142 #26	ENSGT00390000011176 #27	ENSGT00940000156175 #28	ENSGT00390000000481 #29	ENSGT00950000182882.A.b.a #30	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.a.a ##37	ENSGT00940000155472.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480
Bos	ANCESTRAL SPECIES	8	ENSGT00950000182787.E.d.e.b	ENSGT00940000161682	ENSGT00390000006780 #7	ENSGT00940000158323 #8	ENSGT00940000158490	ENSGT00390000011072.c.a #9	ENSGT00440000033985 #11	ENSGT00940000154014.a #12	ENSGT00940000158294 #14	ENSGT01100000263600 #15	ENSGT00390000014996 #16	ENSGT00550000074870.b #17	ENSGT00390000014722 #18	ENSGT00940000153362.a.cb.a.b.a	ENSGT00940000155925 #20	ENSGT00940000157116 #22	ENSGT00940000157866 #23	ENSGT00390000002582 #24	ENSGT00940000157852 #25	ENSGT00940000159695.h	ENSGT00940000155142 #26	ENSGT00390000011176 #27	ENSGT00940000156175 #28	ENSGT00390000000481 #29	ENSGT00950000182882.A.b.a #30	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.a.a ##37	ENSGT00940000156821.p.b	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b ##37	ENSGT00940000153143.a.a.f.e.a.b #32	ENSGT00940000153143.a.a.f.e.a.a.a #33	ENSGT00940000153143.a.a.f.e.a.a.b.b ##37
Bos_a	ANCESTRAL SPECIES	12	ENSGT00950000182787.E.d.e.b	ENSGT00940000161682	ENSGT00390000006780 #7	ENSGT00940000158323 #8	ENSGT00940000158490	ENSGT00390000011072.c.a #9	ENSGT00440000033985 #11	ENSGT00940000154014.a #12	ENSGT00940000158294 #14	ENSGT01100000263600 #15	ENSGT00390000014996 #16	ENSGT00550000074870.b #17	ENSGT00390000014722 #18	ENSGT00940000153362.a.cb.a.b.a	ENSGT00940000155925 #20	ENSGT00940000157116 #22	ENSGT00940000157866 #23	ENSGT00390000002582 #24	ENSGT00940000157852 #25	ENSGT00940000159695.h	ENSGT00940000155142 #26	ENSGT00390000011176 #27	ENSGT00940000156175 #28	ENSGT00390000000481 #29	ENSGT00950000182882.A.b.a #30	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.a.a ##37	ENSGT00940000156821.p.b	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b ##37	ENSGT00940000153143.a.a.f.e.a.b #32	ENSGT00940000153143.a.a.f.e.a.a.a #33	ENSGT00940000153143.a.a.f.e.a.a.b.b ##37
Wild yak	MODERN SPECIES	130																INHBA (ENSBMUG00000004244) #22	SUGCT (ENSBMUG00000004307) #23	MPLKIP (ENSBMUG00000004347) #24	CDK13 (ENSBMUG00000004384) #25	ENSBMUG00000004411	RALA (ENSBMUG00000004423) #26	YAE1 (ENSBMUG00000004434) #27	POU6F2 (ENSBMUG00000004479) #28	VPS41 (ENSBMUG00000004561) #29	AMPH (ENSBMUG00000004619) #30	ENSBMUG00000004644 ##37	ENSBMUG00000004661	ENSBMUG00000004688 ##37
Domestic yak	MODERN SPECIES	23	GCK (ENSBGRG00000011827)	ENSBGRG00000011683	POLD2 (ENSBGRG00000011507) #7	AEBP1 (ENSBGRG00000011094) #8	POLM (ENSBGRG00000010989)	BLVRA (ENSBGRG00000010875) #9	ENSBGRG00000010681 #11	STK17A (ENSBGRG00000010569) #12	ENSBGRG00000010541 #15	HECW1 (ENSBGRG00000010187) #14	MRPL32 (ENSBGRG00000010055) #16	ENSBGRG00000009970 #17	C7orf25 (ENSBGRG00000009953) #18	ENSBGRG00000009871	GLI3 (ENSBGRG00000009720) #20	INHBA (ENSBGRG00000009678) #22	ENSBGRG00000009661	SUGCT (ENSBGRG00000009489) #23	MPLKIP (ENSBGRG00000009446) #24	CDK13 (ENSBGRG00000009206) #25	ENSBGRG00000009155	RALA (ENSBGRG00000009084) #26	YAE1 (ENSBGRG00000009045) #27	POU6F2 (ENSBGRG00000008844) #28	VPS41 (ENSBGRG00000008270) #29	AMPH (ENSBGRG00000007825) #30	ENSBGRG00000007791 ##37	ENSBGRG00000007724 ##37	ENSBGRG00000007684 #32	ENSBGRG00000007662 #32	ENSBGRG00000007638 #33
Bos_b	ANCESTRAL SPECIES	7	ENSGT00390000015164.s.a	ENSGT00950000182787.E.d.e.b	ENSGT00940000161682	ENSGT00390000006780 #7	ENSGT00940000158323 #8	ENSGT00940000158490	ENSGT00390000011072.c.a #9	ENSGT00440000033985 #11	ENSGT00940000154014.a #12	ENSGT00940000158294 #14	ENSGT00390000014996 #16	ENSGT00550000074870.b #17	ENSGT00390000014722 #18	ENSGT00940000153362.a.cb.a.b.a	ENSGT00940000155925 #20	ENSGT00940000157116 #22	ENSGT00940000157866 #23	ENSGT00390000002582 #24	ENSGT00940000157852 #25	ENSGT00940000159695.h	ENSGT00940000155142 #26	ENSGT00390000011176 #27	ENSGT00940000156175 #28	ENSGT00390000000481 #29	ENSGT00950000182882.A.b.a #30	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b ##37	ENSGT00940000153143.a.a.f.e.a.b #32	ENSGT00940000153143.a.a.f.e.a.a.a #33	ENSGT00940000153143.a.a.f.e.a.a.b.b ##37	ENSGT00940000153143.a.a.f.e.a.a.b.a ##37	ENSGT00940000153143.a.b.b.a.b.d.a #37
Cow	MODERN SPECIES	23	CAMK2B (ENSBTAG00000012653)	YKT6 (ENSBTAG00000000274)	GCK (ENSBTAG00000032288)	MYL7 (ENSBTAG00000002066)	POLD2 (ENSBTAG00000012241) #7	AEBP1 (ENSBTAG00000012237) #8	POLM (ENSBTAG00000007796)	BLVRA (ENSBTAG00000013414) #9	COA1 (ENSBTAG00000012968) #11	STK17A (ENSBTAG00000008143) #12	HECW1 (ENSBTAG00000021216) #14	MRPL32 (ENSBTAG00000000991) #16	PSMA2 (ENSBTAG00000000990) #17	C4H7orf25 (ENSBTAG00000009472) #18	GLI3 (ENSBTAG00000010671) #20	INHBA (ENSBTAG00000048508) #22	ENSBTAG00000053253	SUGCT (ENSBTAG00000032121) #23	MPLKIP (ENSBTAG00000018715) #24	CDK13 (ENSBTAG00000001528) #25	ENSBTAG00000054825	RALA (ENSBTAG00000006661) #26	YAE1 (ENSBTAG00000001892) #27	POU6F2 (ENSBTAG00000013648) #28	VPS41 (ENSBTAG00000007305) #29	AMPH (ENSBTAG00000031967) #30	ENSBTAG00000000144 ##37	ENSBTAG00000053474 #33	ENSBTAG00000055254 #34	ENSBTAG00000002859 #35	ENSBTAG00000049399 #37
Hybrid Bos Indicus	MODERN SPECIES	23	ENSBIXG00005003122	ENSBIXG00005003126	GCK (ENSBIXG00005019239)	MYL7 (ENSBIXG00005019279)	AEBP1 (ENSBIXG00005019312) #8	POLD2 (ENSBIXG00005019352) #7	POLM (ENSBIXG00005005521)	BLVRA (ENSBIXG00005003157) #9	ENSBIXG00005006146 #11	HECW1 (ENSBIXG00005019608) #14	MRPL32 (ENSBIXG00005019681) #16	PSMA2 (ENSBIXG00005007827) #17	C7orf25 (ENSBIXG00005019735) #18	ENSBIXG00005006253	GLI3 (ENSBIXG00005019847) #20	INHBA (ENSBIXG00005019918) #22	ENSBIXG00005019940	SUGCT (ENSBIXG00005003265) #23	MPLKIP (ENSBIXG00005020016) #24	CDK13 (ENSBIXG00005020092) #25	ENSBIXG00005020109	ENSBIXG00005020124	RALA (ENSBIXG00005020138) #26	YAE1 (ENSBIXG00005005866) #27	POU6F2 (ENSBIXG00005020231) #28	VPS41 (ENSBIXG00005020347) #29	ENSBIXG00005020415	AMPH (ENSBIXG00005020476) #30	ENSBIXG00005006259 ##37	ENSBIXG00005020518 ##37	ENSBIXG00005005537 ##37
American bison	MODERN SPECIES	3354	GCK (ENSBBBG00000004174)	MYL7 (ENSBBBG00000016836)	POLD2 (ENSBBBG00000004159) #7	AEBP1 (ENSBBBG00000016760) #8	POLM (ENSBBBG00000016689)	BLVRA (ENSBBBG00000016667) #9	COA1 (ENSBBBG00000016648) #11	STK17A (ENSBBBG00000016637) #12	HECW1 (ENSBBBG00000016613) #14	ENSBBBG00000016533 #15	MRPL32 (ENSBBBG00000007141) #16	PSMA2 (ENSBBBG00000007372) #17	C7orf25 (ENSBBBG00000016430) #18	GLI3 (ENSBBBG00000016416) #20	ENSBBBG00000016287	INHBA (ENSBBBG00000016277) #22	SUGCT (ENSBBBG00000016251) #23	MPLKIP (ENSBBBG00000016185) #24	CDK13 (ENSBBBG00000004014) #25	ENSBBBG00000016104	ENSBBBG00000016100	ENSBBBG00000016096	ENSBBBG00000016085	RALA (ENSBBBG00000016078) #26	YAE1 (ENSBBBG00000016071) #27	POU6F2 (ENSBBBG00000007418) #28	VPS41 (ENSBBBG00000016003) #29	ENSBBBG00000015915	AMPH (ENSBBBG00000015904) #30	ENSBBBG00000003951	ENSBBBG00000007259 ##37