Murinae	ANCESTRAL SPECIES	8	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00940000161933	ENSGT00520000055955	ENSGT00830000128402 #8	ENSGT00940000162712 #9	ENSGT00390000017666 #10	ENSGT00940000161472 #11	ENSGT00940000158243 #12	ENSGT00940000157417 #13	ENSGT00940000155944 #14	ENSGT00940000157159 #17	ENSGT00940000159153 #18	ENSGT00390000009546 #19	ENSGT00390000016097 #20	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000000083.a #27	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a.c.b #28	ENSGT01010000222336.a.a.a.ob.a.b ##33	ENSGT01010000222336.a.a.a.ob.a.a.c.a.b #29	ENSGT01050000245403.a #31	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #32	ENSGT01010000222336.a.a.a.ob.b #33	ENSGT00390000016904 #34	ENSGT01030000234522.C.b.e.b.a.a.a #35	ENSGT00940000157459 #36	ENSGT00940000156793 #37
Mus	ANCESTRAL SPECIES	10	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00940000161933	ENSGT00520000055955	ENSGT00830000128402 #8	ENSGT00940000162712 #9	ENSGT00390000017666 #10	ENSGT00940000161472 #11	ENSGT00940000158243 #12	ENSGT00940000157417 #13	ENSGT00940000155944 #14	ENSGT00940000157159 #17	ENSGT00940000159153 #18	ENSGT00390000009546 #19	ENSGT00390000016097 #20	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a.c.b.d ##33	ENSGT00390000000083.a #27	ENSGT01010000222336.a.a.a.ob.a.a.c.b.c #28	ENSGT01010000222336.a.a.a.ob.a.b ##33	ENSGT01010000222336.a.a.a.ob.a.a.c.a.b #29	ENSGT01050000245403.a #31	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #32	ENSGT01010000222336.a.a.a.ob.b #33	ENSGT00390000016904 #34	ENSGT01030000234522.C.b.e.b.a.a.a #35	ENSGT00940000157459 #36
Mus_A	ANCESTRAL SPECIES	17	ENSGT00940000157547	ENSGT00940000161933	ENSGT00520000055955	ENSGT00830000128402 #8	ENSGT00940000162712 #9	ENSGT00390000017666 #10	ENSGT00940000161472 #11	ENSGT00940000158243 #12	ENSGT00940000157417 #13	ENSGT00940000155944 #14	ENSGT00940000156726.f #15	ENSGT00940000157159 #17	ENSGT00940000159153 #18	ENSGT00390000009546 #19	ENSGT00390000016097 #20	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a.c.b.d ##33	ENSGT00390000000083.a #27	ENSGT01010000222336.a.a.a.ob.a.a.c.b.c #28	ENSGT01010000222336.a.a.a.ob.a.b ##33	ENSGT01010000222336.a.a.a.ob.a.a.c.a.b #29	ENSGT01050000245403.a #31	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #32	ENSGT01010000222336.a.a.a.ob.b #33	ENSGT00390000016904 #34	ENSGT01030000234522.C.b.e.b.a.a.a #35	ENSGT00940000157459 #36
Mus_B	ANCESTRAL SPECIES	17	ENSGT00940000157547	ENSGT00940000161933.hb.a	ENSGT00520000055955	ENSGT00830000128402 #8	ENSGT00940000162712 #9	ENSGT00390000017666 #10	ENSGT00940000161472 #11	ENSGT00940000158243 #12	ENSGT00940000157417 #13	ENSGT00940000155944 #14	ENSGT00940000156726.f #15	ENSGT00940000157159 #17	ENSGT00940000159153 #18	ENSGT00390000009546 #19	ENSGT00390000016097 #20	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a.c.b.d ##33	ENSGT00390000000083.a #27	ENSGT00900000143211	ENSGT01010000222336.a.a.a.ob.a.a.c.b.c #28	ENSGT01010000222336.a.a.a.ob.a.b ##33	ENSGT01010000222336.a.a.a.ob.a.a.c.a.b #29	ENSGT01050000245403.a #31	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #32	ENSGT01010000222336.a.a.a.ob.b #33	ENSGT00390000016904 #34	ENSGT01030000234522.C.b.e.b.a.a.a #35
Mus_C	ANCESTRAL SPECIES	11	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00520000055955	ENSGT00830000128402 #8	ENSGT00940000162712 #9	ENSGT00390000017666 #10	ENSGT00940000161472 #11	ENSGT00940000158243 #12	ENSGT00940000157417 #13	ENSGT00940000155944 #14	ENSGT00940000156726.f #15	ENSGT00940000157159 #17	ENSGT00940000159153 #18	ENSGT00390000009546 #19	ENSGT00390000016097 #20	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a.c.b.d ##33	ENSGT00390000000083.a #27	ENSGT00900000143211	ENSGT01010000222336.a.a.a.ob.a.a.c.b.c #28	ENSGT01050000245403.b #30	ENSGT01010000222336.a.a.a.ob.a.a.c.a.b #29	ENSGT01050000245403.a #31	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #32	ENSGT01010000222336.a.a.a.ob.b #33	ENSGT00390000016904 #34	ENSGT01030000234522.C.b.e.b.a.a.a #35
Steppe mouse	MODERN SPECIES	3303		ENSMSIG00000026023 #8	Adam21 (ENSMSIG00000026079) #9	Med6 (ENSMSIG00000026084) #10	Ttc9 (ENSMSIG00000026125) #11	Map3k9 (ENSMSIG00000026137) #12	Pcnx (ENSMSIG00000026173) #13	Sipa1l1 (ENSMSIG00000000195) #14	ENSMSIG00000000341 #15	ENSMSIG00000000376 #16	Rgs6 (ENSMSIG00000000514) #17	Dpf3 (ENSMSIG00000001852) #18	Dcaf4 (ENSMSIG00000001923) #19	Zfyve1 (ENSMSIG00000001995) #20	ENSMSIG00000002025 #21	Rbm25 (ENSMSIG00000002048) #22	Psen1 (ENSMSIG00000002158) #23	Papln (ENSMSIG00000002234) #24	ENSMSIG00000002517 #25	Heatr4 (ENSMSIG00000002642) #26	Riox1 (ENSMSIG00000002696) #27	Acot1 (ENSMSIG00000002711) #28	Acot3 (ENSMSIG00000002760) #29	ENSMSIG00000002815 #30	ENSMSIG00000002825 #31	Acot5 (ENSMSIG00000002856) #32	Acot6 (ENSMSIG00000002911) #33	Dnal1 (ENSMSIG00000002943) #34	Pnma1 (ENSMSIG00000003016) #35	Mideas (ENSMSIG00000003037) #36	Ptgr2 (ENSMSIG00000003090) #37
spretus	MODERN SPECIES	3	Slc8a3 (MGP_SPRETEiJ_G0018751)	MGP_SPRETEiJ_G0018752 #8	Cox16 (MGP_SPRETEiJ_G0018753)	MGP_SPRETEiJ_G0018754 #8	Adam21 (MGP_SPRETEiJ_G0018755) #9	Med6 (MGP_SPRETEiJ_G0018756) #10	Ttc9 (MGP_SPRETEiJ_G0018757) #11	Map3k9 (MGP_SPRETEiJ_G0018758) #12	Pcnx (MGP_SPRETEiJ_G0018759) #13	Sipa1l1 (MGP_SPRETEiJ_G0018760) #14	MGP_SPRETEiJ_G0018761 #15	Rgs6 (MGP_SPRETEiJ_G0018762) #17	Dpf3 (MGP_SPRETEiJ_G0018763) #18	Dcaf4 (MGP_SPRETEiJ_G0018764) #19	Zfyve1 (MGP_SPRETEiJ_G0018765) #20	MGP_SPRETEiJ_G0018766 #22	Psen1 (MGP_SPRETEiJ_G0018767) #23	Papln (MGP_SPRETEiJ_G0018768) #24	Numb (MGP_SPRETEiJ_G0018769) #25	Riox1 (MGP_SPRETEiJ_G0018770) #27	MGP_SPRETEiJ_G0018771	Heatr4 (MGP_SPRETEiJ_G0018772) #26	MGP_SPRETEiJ_G0018773 ##33	MGP_SPRETEiJ_G0018774 #28	MGP_SPRETEiJ_G0018775 ##33	Acot3 (MGP_SPRETEiJ_G0018776) #29	Acot5 (MGP_SPRETEiJ_G0018777) #32	MGP_SPRETEiJ_G0018778 ##33	Dnal1 (MGP_SPRETEiJ_G0018779) #34	Pnma1 (MGP_SPRETEiJ_G0018780) #35	Mideas (MGP_SPRETEiJ_G0018781) #36
Mouse	MODERN SPECIES	3	Gm20498 (ENSMUSG00000021139)	Cox16 (ENSMUSG00000091803)	Gm4787 (ENSMUSG00000072974)	Adam4 (ENSMUSG00000072972)	Synj2bp (ENSMUSG00000090935) #8	Adam21 (ENSMUSG00000008438) #9	Med6 (ENSMUSG00000002679) #10	Ttc9 (ENSMUSG00000042734) #11	Map3k9 (ENSMUSG00000042724) #12	Pcnx (ENSMUSG00000021140) #13	Sipa1l1 (ENSMUSG00000042700) #14	Rgs6 (ENSMUSG00000021219) #17	Dpf3 (ENSMUSG00000021221) #18	Dcaf4 (ENSMUSG00000021222) #19	Zfyve1 (ENSMUSG00000042628) #20	Rbm25 (ENSMUSG00000010608) #22	Psen1 (ENSMUSG00000019969) #23	Papln (ENSMUSG00000021223) #24	Numb (ENSMUSG00000021224) #25	Riox1 (ENSMUSG00000046791) #27	Heatr4 (ENSMUSG00000090843) #26	Acot2 (ENSMUSG00000021226) ##33	Acot1 (ENSMUSG00000072949) #28	Acot4 (ENSMUSG00000052392) ##33	Gm49366 (ENSMUSG00000113475)	Acot3 (ENSMUSG00000021228) #29	Acot5 (ENSMUSG00000042540) #32	Acot6 (ENSMUSG00000043487) #33	Dnal1 (ENSMUSG00000042523) #34	Pnma1 (ENSMUSG00000054383) #35	Mideas (ENSMUSG00000042507) #36
Ryukyu mouse	MODERN SPECIES	3	Slc8a3 (MGP_CAROLIEiJ_G0017906)	MGP_CAROLIEiJ_G0017907 #8	Cox16 (MGP_CAROLIEiJ_G0017908)	MGP_CAROLIEiJ_G0017909 #8	Adam21 (MGP_CAROLIEiJ_G0017910) #9	Med6 (MGP_CAROLIEiJ_G0017911) #10	Ttc9 (MGP_CAROLIEiJ_G0017912) #11	Map3k9 (MGP_CAROLIEiJ_G0017913) #12	Pcnx (MGP_CAROLIEiJ_G0017914) #13	Sipa1l1 (MGP_CAROLIEiJ_G0017915) #14	MGP_CAROLIEiJ_G0017916 #15	Rgs6 (MGP_CAROLIEiJ_G0017917) #17	Dpf3 (MGP_CAROLIEiJ_G0017918) #18	Dcaf4 (MGP_CAROLIEiJ_G0017919) #19	Zfyve1 (MGP_CAROLIEiJ_G0017920) #20	Rbm25 (MGP_CAROLIEiJ_G0017921) #22	Psen1 (MGP_CAROLIEiJ_G0017922) #23	Papln (MGP_CAROLIEiJ_G0017923) #24	Numb (MGP_CAROLIEiJ_G0017924) #25	Riox1 (MGP_CAROLIEiJ_G0017925) #27	MGP_CAROLIEiJ_G0017926	Heatr4 (MGP_CAROLIEiJ_G0017927) #26	Acot4 (MGP_CAROLIEiJ_G0017928) ##33	MGP_CAROLIEiJ_G0017929 #28	MGP_CAROLIEiJ_G0017930 #28	Acot3 (MGP_CAROLIEiJ_G0017931) #29	Acot5 (MGP_CAROLIEiJ_G0017932) #32	Acot6 (MGP_CAROLIEiJ_G0017933) #33	Dnal1 (MGP_CAROLIEiJ_G0017934) #34	Pnma1 (MGP_CAROLIEiJ_G0017935) #35	Mideas (MGP_CAROLIEiJ_G0017936) #36
Shrew mouse	MODERN SPECIES	20	Slc8a3 (MGP_PahariEiJ_G0029662)	MGP_PahariEiJ_G0029663	MGP_PahariEiJ_G0029664 #8	Cox16 (MGP_PahariEiJ_G0029665)	Synj2bp (MGP_PahariEiJ_G0029666) #8	Adam21 (MGP_PahariEiJ_G0029667) #9	Med6 (MGP_PahariEiJ_G0029668) #10	Ttc9 (MGP_PahariEiJ_G0029669) #11	Map3k9 (MGP_PahariEiJ_G0029670) #12	Pcnx (MGP_PahariEiJ_G0029671) #13	Sipa1l1 (MGP_PahariEiJ_G0029672) #14	Rgs6 (MGP_PahariEiJ_G0029673) #17	Dpf3 (MGP_PahariEiJ_G0029674) #18	Dcaf4 (MGP_PahariEiJ_G0029675) #19	Zfyve1 (MGP_PahariEiJ_G0029676) #20	Rbm25 (MGP_PahariEiJ_G0029677) #22	Psen1 (MGP_PahariEiJ_G0029678) #23	Papln (MGP_PahariEiJ_G0029679) #24	Numb (MGP_PahariEiJ_G0029680) #25	Riox1 (MGP_PahariEiJ_G0029681) #27	MGP_PahariEiJ_G0029682	Heatr4 (MGP_PahariEiJ_G0029683) #26	Or8b47 (MGP_PahariEiJ_G0029684)	MGP_PahariEiJ_G0029685	MGP_PahariEiJ_G0029686	MGP_PahariEiJ_G0029687 #28	MGP_PahariEiJ_G0029688 #28	Acot4 (MGP_PahariEiJ_G0029689) ##33	MGP_PahariEiJ_G0029690 ##33	Acot5 (MGP_PahariEiJ_G0029691) #32	Acot6 (MGP_PahariEiJ_G0029692) #33
Rat	DUPLICATION
Rat	MODERN SPECIES	16	ENSRNOG00000067664	Smoc1 (ENSRNOG00000005998)	Slc8a3 (ENSRNOG00000029871)	Cox16 (ENSRNOG00000047115)	Synj2bp (ENSRNOG00000006399) #8	LOC103690152 (ENSRNOG00000047682) #9	Med6 (ENSRNOG00000006976) #10	Ttc9 (ENSRNOG00000007254) #11	Map3k9 (ENSRNOG00000007271) #12	Pcnx1 (ENSRNOG00000007459) #13	Sipa1l1 (ENSRNOG00000007646) #14	Rgs6 (ENSRNOG00000008082) #17	Dpf3 (ENSRNOG00000008086) #18	Dcaf4 (ENSRNOG00000008399) #19	Zfyve1 (ENSRNOG00000008614) #20	Rbm25 (ENSRNOG00000002874) #22	Psen1 (ENSRNOG00000009110) #23	Papln (ENSRNOG00000009448) #24	Numb (ENSRNOG00000009653) #25	Heatr4 (ENSRNOG00000038183) #26	Riox1 (ENSRNOG00000010126) #27	Acot2 (ENSRNOG00000010134) #28	Acot1 (ENSRNOG00000055221) #28	Acot4 (ENSRNOG00000046864) ##33	Acot3 (ENSRNOG00000027960) #29	ENSRNOG00000067599 #31	Acot5 (ENSRNOG00000032508) #32	Acot3 (ENSRNOG00000053460) #32	Acot6 (ENSRNOG00000029637) #33	Dnal1 (ENSRNOG00000042333) #34	Pnma1 (ENSRNOG00000010553) #35
Rat	MODERN SPECIES	1	Emp2 (ENSRNOG00000002664)	Atf7ip2 (ENSRNOG00000025522)	Rpl39l (ENSRNOG00000032300)	Grin2a (ENSRNOG00000033942)	Hapstr1 (ENSRNOG00000002545)	Usp7 (ENSRNOG00000025496)	Litafd (ENSRNOG00000055413)	Carhsp1 (ENSRNOG00000002610)	Pmm2 (ENSRNOG00000002615)	Tmem186 (ENSRNOG00000027087)	Abat (ENSRNOG00000002636)	Mettl22 (ENSRNOG00000002714)	Tmem114 (ENSRNOG00000002768)	ENSRNOG00000064673	Rbfox1 (ENSRNOG00000002827)	Rbm25l1 (ENSRNOG00000064553) #22	ENSRNOG00000069050	Eef2kmt (ENSRNOG00000002876)	Alg1 (ENSRNOG00000002883)	RGD1565166 (ENSRNOG00000021796)	Nagpa (ENSRNOG00000002895)	Sec14l5 (ENSRNOG00000002917)	Ppl (ENSRNOG00000002930)	Ubn1 (ENSRNOG00000003019)	Glyr1 (ENSRNOG00000003065)	Rogdi (ENSRNOG00000003125)	Septin12 (ENSRNOG00000003137)	Dnaaf8 (ENSRNOG00000028075)	Anks3 (ENSRNOG00000003186)	Nudt16l1 (ENSRNOG00000003224)	Mgrn1 (ENSRNOG00000003234)