Tetrapoda	ANCESTRAL SPECIES	85	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00520000055955	ENSGT00940000164487	ENSGT00830000128402	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT01100000264921	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00940000164083	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT01030000234606.a.a.a.a	ENSGT00530000063596.B	ENSGT00940000159481	ENSGT00940000159230	ENSGT00940000156092	ENSGT00940000157336	ENSGT00950000182843.a.a.a.a	ENSGT00940000157393	ENSGT00390000004927	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a #34	ENSGT00390000016904 #35
Amniota	ANCESTRAL SPECIES	8	ENSGT00940000157547	ENSGT00520000055955	ENSGT00940000164487	ENSGT00830000128402	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT01100000264921	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00940000164083	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000166770	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a #34	ENSGT00390000016904 #35	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00390000016216	ENSGT00950000183075.a.a.a.b	ENSGT00940000163655	ENSGT00940000160367	ENSGT00940000164449
Mammalia	ANCESTRAL SPECIES	16	ENSGT00940000157547	ENSGT00520000055955	ENSGT00940000164487	ENSGT00830000128402	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT01100000264921	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00940000164083	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000166770	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a #34	ENSGT00390000016904 #35	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998	ENSGT00390000015152	ENSGT01100000263540.A.b	ENSGT01040000244584
Theria	ANCESTRAL SPECIES	14	ENSGT00940000157547	ENSGT00520000055955	ENSGT00940000164487	ENSGT00830000128402	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT01100000264921	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00940000164083	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000166770	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a #34	ENSGT00390000016904 #35	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998	ENSGT00390000015152	ENSGT01100000263540.A.b	ENSGT01040000244584
Eutheria	ANCESTRAL SPECIES	12	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000161933	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT01100000264921	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000166770	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01050000245403	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098
Boreoeutheria	ANCESTRAL SPECIES	3	ENSGT00940000162712 #11	ENSGT00940000161933	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT01100000264921	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00910000147388	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000166770	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01050000245403.b	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098
Euarchontoglires	ANCESTRAL SPECIES	3	ENSGT00940000162712 #11	ENSGT00940000161933	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT01100000264921	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00910000147388	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998	ENSGT00390000015152
Primates	ANCESTRAL SPECIES	2	ENSGT00940000162712 #11	ENSGT00940000161933	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT01100000264921	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00910000147388	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998	ENSGT00390000015152
Strepsirrhini	ANCESTRAL SPECIES	2	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000161933	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00390000017666.j #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00860000135749	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998	ENSGT00390000015152
Lemuriformes	ANCESTRAL SPECIES	28	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000161933	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00390000017666.j #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00860000135749	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998	ENSGT00390000015152
Mouse lemur	MODERN SPECIES	22	ENSMICG00000045649 #7	ENSMICG00000035515 #8	ENSMICG00000043615 #9	ENSMICG00000015450 #10	ADAM21 (ENSMICG00000034380) #11	ADAM20 (ENSMICG00000036625) #12	MED6 (ENSMICG00000012994) #13	TTC9 (ENSMICG00000030903) #14	MAP3K9 (ENSMICG00000013005) #15	PCNX1 (ENSMICG00000013023) #16	SIPA1L1 (ENSMICG00000014353) #17	ENSMICG00000038287 #18	DPF3 (ENSMICG00000015475) #19	ENSMICG00000015497 #20	ZFYVE1 (ENSMICG00000015510) #21	RBM25 (ENSMICG00000034082) #22	PSEN1 (ENSMICG00000017923) #23	ENSMICG00000035778 #24	ENSMICG00000047520 #25	PAPLN (ENSMICG00000017924) #26	ENSMICG00000017925 #27	HEATR4 (ENSMICG00000008517) #28	ENSMICG00000002778 #29	ENSMICG00000046968 #30	ENSMICG00000044045 #31	ENSMICG00000035134 #32	ENSMICG00000036692 #33	ACOT6 (ENSMICG00000033023) #34	DNAL1 (ENSMICG00000032196) #35	PNMA1 (ENSMICG00000002795) #36	MIDEAS (ENSMICG00000002805) #37
Lemuriformes_a	ANCESTRAL SPECIES	11	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000161933	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00390000017666.j #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00860000135749	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998	ENSGT00390000015152
Coquerels sifaka	MODERN SPECIES	653	SRSF5 (ENSPCOG00000014442)	SLC10A1 (ENSPCOG00000026260)	SMOC1 (ENSPCOG00000019775)	SLC8A3 (ENSPCOG00000019072)	COX16 (ENSPCOG00000024374)	SYNJ2BP (ENSPCOG00000026833)	MED6 (ENSPCOG00000003889) #13	TTC9 (ENSPCOG00000023858) #14	MAP3K9 (ENSPCOG00000021689) #15	PCNX1 (ENSPCOG00000015594) #16	SIPA1L1 (ENSPCOG00000026510) #17	RGS6 (ENSPCOG00000021594) #18	DPF3 (ENSPCOG00000022441) #19	ENSPCOG00000022782 #20	ZFYVE1 (ENSPCOG00000017005) #21	RBM25 (ENSPCOG00000023107) #22	PSEN1 (ENSPCOG00000018929) #23	PAPLN (ENSPCOG00000010404) #26	NUMB (ENSPCOG00000019381) #27	HEATR4 (ENSPCOG00000015681) #28	ENSPCOG00000028629 #31	ACOT4 (ENSPCOG00000026670) #32	ENSPCOG00000020459 #31	ENSPCOG00000020943 #34	DNAL1 (ENSPCOG00000025043) #35	PNMA1 (ENSPCOG00000013444) #36	MIDEAS (ENSPCOG00000022588) #37	PTGR2 (ENSPCOG00000023980)	ZNF410 (ENSPCOG00000021079)	FAM161B (ENSPCOG00000002979)	COQ6 (ENSPCOG00000023336)
Greater bamboo lemur	DUPLICATION
Greater bamboo lemur	MODERN SPECIES	802									SIPA1L1 (ENSPSMG00000014702) #17	RGS6 (ENSPSMG00000015304) #18	DPF3 (ENSPSMG00000015731) #19	ENSPSMG00000015744	ENSPSMG00000015813 #20	ZFYVE1 (ENSPSMG00000015851) #21	ENSPSMG00000015868	ENSPSMG00000015962 #22	PSEN1 (ENSPSMG00000016104) #23	PAPLN (ENSPSMG00000016270) #26	NUMB (ENSPSMG00000016550) #27	RIOX1 (ENSPSMG00000016647)	ENSPSMG00000016650 #28	ACOT4 (ENSPSMG00000016672) #32	ENSPSMG00000016682 #34	ENSPSMG00000016693 #35	SOX3 (ENSPSMG00000016701)
Greater bamboo lemur	MODERN SPECIES	572							GUCA1C (ENSPSMG00000005029)	TRAT1 (ENSPSMG00000005044)	RETNLB (ENSPSMG00000005048)	DZIP3 (ENSPSMG00000005167)	CIP2A (ENSPSMG00000005260)	HHLA2 (ENSPSMG00000005283)	IFT57 (ENSPSMG00000005302)	CD47 (ENSPSMG00000005307)	BBX (ENSPSMG00000005421)	ENSPSMG00000005668 #22	CCDC54 (ENSPSMG00000005672)	CBLB (ENSPSMG00000005758)	ALCAM (ENSPSMG00000005823)	ZPLD1 (ENSPSMG00000005890)	ENSPSMG00000005899	NFKBIZ (ENSPSMG00000005927)	NXPE3 (ENSPSMG00000005951)	CEP97 (ENSPSMG00000005986)	RPL24 (ENSPSMG00000006020)	ZBTB11 (ENSPSMG00000006051)
Bushbaby	MODERN SPECIES	311	ENSOGAG00000002415	ENSOGAG00000003385	ADAM21 (ENSOGAG00000032627) #11	ADAM20 (ENSOGAG00000034319) #12	MED6 (ENSOGAG00000001311) #13	TTC9 (ENSOGAG00000031297) #14	ENSOGAG00000026938	MAP3K9 (ENSOGAG00000011147) #15	PCNX1 (ENSOGAG00000010264) #16	SIPA1L1 (ENSOGAG00000003167) #17	RGS6 (ENSOGAG00000013482) #18	DPF3 (ENSOGAG00000013496) #19	ENSOGAG00000034613	ENSOGAG00000012383 #20	ZFYVE1 (ENSOGAG00000012390) #21	RBM25 (ENSOGAG00000014986) #22	ENSOGAG00000031643 #23
Haplorrhini	ANCESTRAL SPECIES	12	ENSGT00940000162712 #11	ENSGT00940000161933	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT01100000264921	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00910000147388	ENSGT00390000009546.a #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998	ENSGT00390000015152
Simiiformes	ANCESTRAL SPECIES	2	ENSGT00940000162712 #11	ENSGT00940000161933	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT01100000264921	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00910000147388	ENSGT00390000009546.a #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998	ENSGT00390000015152
Catarrhini	ANCESTRAL SPECIES	9	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT01100000264921	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000153222.a.b.b.b.b.k.b	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00860000135749	ENSGT00910000147388	ENSGT00390000009546.a #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00900000143785	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998
Hominoidea	ANCESTRAL SPECIES	12	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000162712 #11	ENSGT00940000161933	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000153222.a.b.b.b.b.k.b	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546.a #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00900000143785	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998
Hominidae	ANCESTRAL SPECIES	14	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000162712.e.a #11	ENSGT00940000161933.z	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000153222.a.b.b.b.b.k.b	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546.a #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000013207 #28	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00900000143785	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	12	ENSGT00830000128402	ENSGT00940000162712.e.a #11	ENSGT00940000161933.z	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000153222.a.b.b.b.b.k.b	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000011943.b	ENSGT00390000009546.a #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a.i #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00900000143785	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998
Homo/Pan group	ANCESTRAL SPECIES	11	ENSGT00830000128402	ENSGT00940000162712.e.a #11	ENSGT00940000161933.z	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000153222.a.b.b.b.b.k.b	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000011943.b	ENSGT00390000009546.a #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a.i #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00900000143785	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998
Pan	ANCESTRAL SPECIES	8	ENSGT00830000128402	ENSGT00940000162712.e.a #11	ENSGT00940000161933.z	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000153222.a.b.b.b.b.k.b	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000011943.b	ENSGT00390000009546.a #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000013207 #28	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.ob.a.a.i #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00900000143785	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998
Chimpanzee	MODERN SPECIES	5	SYNJ2BP (ENSPTRG00000034394)	ENSPTRG00000048603 #11	ENSPTRG00000051900	ADAM20 (ENSPTRG00000030707) #12	MED6 (ENSPTRG00000006496) #13	TTC9 (ENSPTRG00000039204) #14	MAP3K9 (ENSPTRG00000006499) #15	PCNX1 (ENSPTRG00000006500) #16	ENSPTRG00000040068	SIPA1L1 (ENSPTRG00000023075) #17	RGS6 (ENSPTRG00000006504) #18	DPF3 (ENSPTRG00000030704) #19	DCAF4 (ENSPTRG00000006507) #20	ENSPTRG00000043558	ZFYVE1 (ENSPTRG00000006508) #21	RBM25 (ENSPTRG00000006509) #22	PSEN1 (ENSPTRG00000006510) #23	PAPLN (ENSPTRG00000006512) #26	NUMB (ENSPTRG00000006513) #27	ENSPTRG00000051883	HEATR4 (ENSPTRG00000006515) #28	ACOT2 (ENSPTRG00000006516) #31	ACOT4 (ENSPTRG00000006518) #32	ACOT6 (ENSPTRG00000030702) #34	DNAL1 (ENSPTRG00000006520) #35	PNMA1 (ENSPTRG00000006521) #36	MIDEAS (ENSPTRG00000006523) #37	PTGR2 (ENSPTRG00000006524)	ZNF410 (ENSPTRG00000006525)	FAM161B (ENSPTRG00000006526)	COQ6 (ENSPTRG00000006527)
Bonobo	MODERN SPECIES	5	ENSPPAG00000028140 #11	COX16 (ENSPPAG00000038084)	SYNJ2BP (ENSPPAG00000001578)	ADAM21 (ENSPPAG00000029592) #11	ENSPPAG00000043925	ADAM20 (ENSPPAG00000015111) #12	MED6 (ENSPPAG00000042102) #13	TTC9 (ENSPPAG00000035446) #14	MAP3K9 (ENSPPAG00000027733) #15	PCNX1 (ENSPPAG00000038593) #16	SIPA1L1 (ENSPPAG00000000429) #17	ENSPPAG00000022724 #18	DPF3 (ENSPPAG00000037348) #19	DCAF4 (ENSPPAG00000029989) #20	ZFYVE1 (ENSPPAG00000043760) #21	RBM25 (ENSPPAG00000039402) #22	PSEN1 (ENSPPAG00000038712) #23	PAPLN (ENSPPAG00000042474) #26	NUMB (ENSPPAG00000022878) #27	HEATR4 (ENSPPAG00000018626) #28	RIOX1 (ENSPPAG00000021453)	ACOT2 (ENSPPAG00000003795) #31	ACOT4 (ENSPPAG00000037580) #32	ENSPPAG00000012443 #34	DNAL1 (ENSPPAG00000038940) #35	PNMA1 (ENSPPAG00000016978) #36	MIDEAS (ENSPPAG00000043022) #37	ENSPPAG00000010721	PTGR2 (ENSPPAG00000043789)	ZNF410 (ENSPPAG00000038897)	FAM161B (ENSPPAG00000036655)
Human	MODERN SPECIES	5	SLC8A3 (ENSG00000100678)	COX16 (ENSG00000133983)	SYNJ2BP-COX16 (ENSG00000258644)	SYNJ2BP (ENSG00000213463)	ADAM21 (ENSG00000139985) #11	ADAM20 (ENSG00000134007) #12	MED6 (ENSG00000133997) #13	TTC9 (ENSG00000133985) #14	MAP3K9 (ENSG00000006432) #15	PCNX1 (ENSG00000100731) #16	SIPA1L1 (ENSG00000197555) #17	RGS6 (ENSG00000182732) #18	DPF3 (ENSG00000205683) #19	DCAF4 (ENSG00000119599) #20	ZFYVE1 (ENSG00000165861) #21	RBM25 (ENSG00000119707) #22	PSEN1 (ENSG00000080815) #23	PAPLN (ENSG00000100767) #26	NUMB (ENSG00000133961) #27	HEATR4 (ENSG00000187105) #28	RIOX1 (ENSG00000170468)	ACOT1 (ENSG00000184227) #31	ACOT2 (ENSG00000119673) #31	ACOT4 (ENSG00000177465) #32	ACOT6 (ENSG00000205669) #34	DNAL1 (ENSG00000119661) #35	PNMA1 (ENSG00000176903) #36	MIDEAS (ENSG00000156030) #37	PTGR2 (ENSG00000140043)	ZNF410 (ENSG00000119725)	FAM161B (ENSG00000156050)
Gorilla	MODERN SPECIES	5	SYNJ2BP (ENSGGOG00000037626)	ADAM21 (ENSGGOG00000023328) #11	ENSGGOG00000024177	ADAM20 (ENSGGOG00000023185) #12	MED6 (ENSGGOG00000006341) #13	TTC9 (ENSGGOG00000003504) #14	MAP3K9 (ENSGGOG00000010418) #15	PCNX1 (ENSGGOG00000006196) #16	ENSGGOG00000038964	SIPA1L1 (ENSGGOG00000013648) #17	ENSGGOG00000007256 #18	ENSGGOG00000009139 #19	ENSGGOG00000022649	DCAF4 (ENSGGOG00000003815) #20	ZFYVE1 (ENSGGOG00000005166) #21	RBM25 (ENSGGOG00000002415) #22	PSEN1 (ENSGGOG00000002132) #23	PAPLN (ENSGGOG00000002134) #26	NUMB (ENSGGOG00000002141) #27	HEATR4 (ENSGGOG00000003658) #28	ACOT2 (ENSGGOG00000015023) #31	ACOT4 (ENSGGOG00000001567) #32	ACOT6 (ENSGGOG00000014111) #34	DNAL1 (ENSGGOG00000015989) #35	PNMA1 (ENSGGOG00000006159) #36	MIDEAS (ENSGGOG00000006163) #37	ENSGGOG00000040793	PTGR2 (ENSGGOG00000015300)	ZNF410 (ENSGGOG00000000715)	FAM161B (ENSGGOG00000014345)	COQ6 (ENSGGOG00000014355)
Orangutan	MODERN SPECIES	5	ENSPPYG00000005952 #11	ENSPPYG00000039435	COX16 (ENSPPYG00000005951)	SYNJ2BP (ENSPPYG00000029433)	ADAM20 (ENSPPYG00000005953) #12	MED6 (ENSPPYG00000005954) #13	TTC9 (ENSPPYG00000030644) #14	MAP3K9 (ENSPPYG00000005956) #15	PCNX1 (ENSPPYG00000005957) #16	SIPA1L1 (ENSPPYG00000005960) #17	ENSPPYG00000030046	RGS6 (ENSPPYG00000005962) #18	ENSPPYG00000005963 #19	DCAF4 (ENSPPYG00000005965) #20	ZFYVE1 (ENSPPYG00000005966) #21	RBM25 (ENSPPYG00000037322) #22	PSEN1 (ENSPPYG00000005967) #23	PAPLN (ENSPPYG00000005968) #26	NUMB (ENSPPYG00000041351) #27	HEATR4 (ENSPPYG00000005970) #28	RIOX1 (ENSPPYG00000032048)	ENSPPYG00000033025 #31	ENSPPYG00000005971 #31	ACOT4 (ENSPPYG00000029617) #32	ENSPPYG00000029646 #34	DNAL1 (ENSPPYG00000005973) #35	PNMA1 (ENSPPYG00000005974) #36	MIDEAS (ENSPPYG00000005975) #37	PTGR2 (ENSPPYG00000005976)	ZNF410 (ENSPPYG00000037257)	FAM161B (ENSPPYG00000038071)
Gibbon	MODERN SPECIES	10	SYNJ2BP (ENSNLEG00000001800)	ADAM20 (ENSNLEG00000001815) #12	MED6 (ENSNLEG00000036318) #13	TTC9 (ENSNLEG00000001880) #14	MAP3K9 (ENSNLEG00000001891) #15	PCNX1 (ENSNLEG00000001896) #16	ENSNLEG00000036319	SIPA1L1 (ENSNLEG00000002117) #17	ENSNLEG00000002297 #18	ENSNLEG00000002403 #19	ENSNLEG00000035680	ENSNLEG00000035129	ENSNLEG00000028662	DCAF4 (ENSNLEG00000002449) #20	ZFYVE1 (ENSNLEG00000002632) #21	RBM25 (ENSNLEG00000002701) #22	PSEN1 (ENSNLEG00000002855) #23	PAPLN (ENSNLEG00000002925) #26	NUMB (ENSNLEG00000002944) #27	HEATR4 (ENSNLEG00000003060) #28	RIOX1 (ENSNLEG00000003130)	ENSNLEG00000027838 #31	DTD2 (ENSNLEG00000034317)	NUBPL (ENSNLEG00000003141)	ENSNLEG00000028683	ENSNLEG00000003168	AKAP6 (ENSNLEG00000003187)	ENSNLEG00000032055	ENSNLEG00000032145	EGLN3 (ENSNLEG00000003247)	SPTSSA (ENSNLEG00000029839)
Cercopithecidae	ANCESTRAL SPECIES	7	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT01100000264921	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000153222.a.b.b.b.b.k.b	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00860000135749	ENSGT00910000147388	ENSGT00390000009546.a #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00900000143785	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998
Cercopithecinae	ANCESTRAL SPECIES	2	ENSGT00940000161933.`b	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT01100000264921	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000153222.a.b.b.b.b.k.b	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00860000135749	ENSGT00390000009546.a #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00900000143785	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998
Cercopithecinae_a	ANCESTRAL SPECIES	1	ENSGT00830000128402	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000153222.a.b.b.b.b.k.b	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00860000135749	ENSGT00390000009546.a #20	ENSGT00390000016097 #21	ENSGT00940000153052.c.b.a.a.a.a.a.a.b.a	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00900000143785	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998
Macaca	ANCESTRAL SPECIES	1	ENSGT00940000162712.c.a #11	ENSGT00940000161933.`b.a.a	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000153222.a.b.b.b.b.k.b	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00860000135749	ENSGT00390000009546.a #20	ENSGT00390000016097 #21	ENSGT00940000153052.c.b.a.a.a.a.a.a.b.a	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998	ENSGT00390000015152
Pig-tailed macaque	MODERN SPECIES	214			ENSMNEG00000037557	MED6 (ENSMNEG00000005643) #13	TTC9 (ENSMNEG00000031012) #14	MAP3K9 (ENSMNEG00000037894) #15	PCNX1 (ENSMNEG00000017837) #16	ENSMNEG00000033356	SIPA1L1 (ENSMNEG00000039216) #17	ENSMNEG00000033671	RGS6 (ENSMNEG00000030946) #18	ENSMNEG00000034035	DPF3 (ENSMNEG00000030722) #19	DCAF4 (ENSMNEG00000036053) #20	ZFYVE1 (ENSMNEG00000029231) #21	RBM25 (ENSMNEG00000032922) #22	PSEN1 (ENSMNEG00000037289) #23	PAPLN (ENSMNEG00000027160) #26	NUMB (ENSMNEG00000034179) #27	RIOX1 (ENSMNEG00000021421)	HEATR4 (ENSMNEG00000032384) #28	ENSMNEG00000033296 #31	ACOT4 (ENSMNEG00000028485) #32	ENSMNEG00000005067 #34	DNAL1 (ENSMNEG00000034870) #35
Macaca_a	ANCESTRAL SPECIES	2	ENSGT00940000162712.d #11	ENSGT00940000161933.`b.a.a	ENSGT00940000161933.`b.a.b.a	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00860000135749	ENSGT00390000009546.a #20	ENSGT00390000016097 #21	ENSGT00940000153052.c.b.a.a.a.a.a.a.b.a	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT00940000153052.c.b.a.a.a.a.a.b	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998	ENSGT00390000015152	ENSGT01100000263540.A.b
Rhesus	MODERN SPECIES	17	ENSMMUG00000059282	ENSMMUG00000052580	ADAM20 (ENSMMUG00000000202) #12	MED6 (ENSMMUG00000005781) #13	TTC9 (ENSMMUG00000056365) #14	ENSMMUG00000051671	MAP3K9 (ENSMMUG00000005786) #15	PCNX1 (ENSMMUG00000019470) #16	SIPA1L1 (ENSMMUG00000020067) #17	RGS6 (ENSMMUG00000001820) #18	DPF3 (ENSMMUG00000016351) #19	ENSMMUG00000063538	DCAF4 (ENSMMUG00000003625) #20	ZFYVE1 (ENSMMUG00000005140) #21	ENSMMUG00000056507	RBM25 (ENSMMUG00000002332) #22	PSEN1 (ENSMMUG00000010173) #23	PAPLN (ENSMMUG00000020195) #26	NUMB (ENSMMUG00000020196) #27	RIOX1 (ENSMMUG00000000315)	ENSMMUG00000053481	ENSMMUG00000049894	ENSMMUG00000006855 #34	DNAL1 (ENSMMUG00000004910) #35	PNMA1 (ENSMMUG00000004911) #36	MIDEAS (ENSMMUG00000004913) #37	PTGR2 (ENSMMUG00000018146)	ZNF410 (ENSMMUG00000011144)	FAM161B (ENSMMUG00000029273)	COQ6 (ENSMMUG00000011148)	BBOF1 (ENSMMUG00000012683)
Crab-eating macaque	MODERN SPECIES	17	ENSMFAG00000023207	ADAM20 (ENSMFAG00000056245) #12	MED6 (ENSMFAG00000032743) #13	TTC9 (ENSMFAG00000052601) #14	MAP3K9 (ENSMFAG00000002562) #15	PCNX1 (ENSMFAG00000033279) #16	SIPA1L1 (ENSMFAG00000038037) #17	RGS6 (ENSMFAG00000033074) #18	DPF3 (ENSMFAG00000033308) #19	ENSMFAG00000057362	DCAF4 (ENSMFAG00000037267) #20	ENSMFAG00000064227	ZFYVE1 (ENSMFAG00000037270) #21	ENSMFAG00000047560	ENSMFAG00000063025	RBM25 (ENSMFAG00000040040) #22	PSEN1 (ENSMFAG00000000113) #23	PAPLN (ENSMFAG00000021512) #26	NUMB (ENSMFAG00000046300) #27	HEATR4 (ENSMFAG00000043816) #28	ENSMFAG00000048994	ENSMFAG00000049913	ENSMFAG00000031617 #34	DNAL1 (ENSMFAG00000035392) #35	PNMA1 (ENSMFAG00000007972) #36	ENSMFAG00000063574	MIDEAS (ENSMFAG00000034140) #37	PTGR2 (ENSMFAG00000045904)	ZNF410 (ENSMFAG00000000428)	FAM161B (ENSMFAG00000038086)	COQ6 (ENSMFAG00000046089)
Cercopithecinae_b	ANCESTRAL SPECIES	8	ENSGT00830000128402	ENSGT00940000161933.`b.a.a	ENSGT00940000161933.`b.b	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000153222.a.b.b.b.b.k.b	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546.a #20	ENSGT00390000016097 #21	ENSGT00940000153052.c.b.a.a.a.a.a.a.b.a	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000013207 #28	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00900000143785	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998
Olive baboon	MODERN SPECIES	17	SYNJ2BP (ENSPANG00000010342)	ADAM20 (ENSPANG00000048884) #12	ENSPANG00000039971	MED6 (ENSPANG00000036307) #13	TTC9 (ENSPANG00000017558) #14	MAP3K9 (ENSPANG00000024112) #15	PCNX1 (ENSPANG00000018659) #16	ENSPANG00000049489	SIPA1L1 (ENSPANG00000010341) #17	ENSPANG00000043598	RGS6 (ENSPANG00000006945) #18	DPF3 (ENSPANG00000018213) #19	DCAF4 (ENSPANG00000016403) #20	ENSPANG00000000607	ZFYVE1 (ENSPANG00000009729) #21	RBM25 (ENSPANG00000018212) #22	PSEN1 (ENSPANG00000006859) #23	PAPLN (ENSPANG00000009728) #26	NUMB (ENSPANG00000026174) #27	ENSPANG00000026271 #31	ENSPANG00000031897 #34	DNAL1 (ENSPANG00000015764) #35	PNMA1 (ENSPANG00000003663) #36	ENSPANG00000015765	ENSPANG00000029412	PTGR2 (ENSPANG00000015767)	ZNF410 (ENSPANG00000013439)	FAM161B (ENSPANG00000018775)	COQ6 (ENSPANG00000022438)	ENTPD5 (ENSPANG00000024304)	BBOF1 (ENSPANG00000009281)
Cercopithecinae_d	ANCESTRAL SPECIES	11			ENSGT00940000161933.`b.b	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000153222.a.b.b.b.b.k.b	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546.a #20	ENSGT00390000016097 #21	ENSGT00940000153052.c.b.a.a.a.a.a.a.b.a	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00900000143785	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998	ENSGT00390000015152
Drill	MODERN SPECIES	867				ENSMLEG00000036404	MED6 (ENSMLEG00000042671) #13	ENSMLEG00000004124	MAP3K9 (ENSMLEG00000011182) #15	PCNX1 (ENSMLEG00000041683) #16	ENSMLEG00000034079	SIPA1L1 (ENSMLEG00000029565) #17	ENSMLEG00000029596	RGS6 (ENSMLEG00000032736) #18	DPF3 (ENSMLEG00000036959) #19	DCAF4 (ENSMLEG00000040126) #20	ZFYVE1 (ENSMLEG00000035385) #21	RBM25 (ENSMLEG00000035157) #22	PSEN1 (ENSMLEG00000033881) #23	PAPLN (ENSMLEG00000037242) #26	NUMB (ENSMLEG00000023581) #27	HEATR4 (ENSMLEG00000044156) #28	ENSMLEG00000036461 #31	ACOT4 (ENSMLEG00000029946) #32	ENSMLEG00000041143 #34	DNAL1 (ENSMLEG00000032796) #35
Sooty mangabey	MODERN SPECIES	303			ENSCATG00000017347	MED6 (ENSCATG00000033151) #13	TTC9 (ENSCATG00000038839) #14	MAP3K9 (ENSCATG00000030062) #15	PCNX1 (ENSCATG00000021420) #16	SIPA1L1 (ENSCATG00000036653) #17	ENSCATG00000029544	RGS6 (ENSCATG00000040492) #18	DPF3 (ENSCATG00000009867) #19	DCAF4 (ENSCATG00000020304) #20	ENSCATG00000032385	ZFYVE1 (ENSCATG00000037612) #21	ENSCATG00000042248	RBM25 (ENSCATG00000039651) #22	PSEN1 (ENSCATG00000038778) #23	PAPLN (ENSCATG00000042093) #26	NUMB (ENSCATG00000041867) #27	HEATR4 (ENSCATG00000044114) #28	RIOX1 (ENSCATG00000021107)	ENSCATG00000029897 #31	ENSCATG00000036501
Vervet Monkey	MODERN SPECIES	16	COX16 (ENSCSAG00000013011)	SYNJ2BP (ENSCSAG00000012994)	ADAM20 (ENSCSAG00000012987) #12	MED6 (ENSCSAG00000012980) #13	TTC9 (ENSCSAG00000012967) #14	ENSCSAG00000012963	MAP3K9 (ENSCSAG00000012955) #15	PCNX1 (ENSCSAG00000012945) #16	ENSCSAG00000012924	SIPA1L1 (ENSCSAG00000012918) #17	ENSCSAG00000012896	RGS6 (ENSCSAG00000012876) #18	DPF3 (ENSCSAG00000012864) #19	DCAF4 (ENSCSAG00000012844) #20	ZFYVE1 (ENSCSAG00000012822) #21	RBM25 (ENSCSAG00000012801) #22	PSEN1 (ENSCSAG00000012773) #23	PAPLN (ENSCSAG00000012756) #26	NUMB (ENSCSAG00000012724) #27	ENSCSAG00000012717 #31	ACOT4 (ENSCSAG00000012700) #32	ENSCSAG00000019571 #34	DNAL1 (ENSCSAG00000012693) #35	PNMA1 (ENSCSAG00000019572) #36	MIDEAS (ENSCSAG00000012679) #37	PTGR2 (ENSCSAG00000012670)	ZNF410 (ENSCSAG00000012661)	FAM161B (ENSCSAG00000012650)	COQ6 (ENSCSAG00000012631)	ENTPD5 (ENSCSAG00000012613)	BBOF1 (ENSCSAG00000012603)
Rhinopithecus	ANCESTRAL SPECIES	229	ENSGT00520000055955.f.a	ENSGT00830000128402	ENSGT00940000162712 #11	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000153222.a.b.b.b.b.k.b	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00860000135749	ENSGT00910000147388	ENSGT00390000009546.a #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00940000153385.b.a.b.oc	ENSGT00390000013207 #28	ENSGT00390000000083.a	ENSGT00940000153052.c.b.a.a.a.a.a.a.b.b.b	ENSGT01010000222336.a.a.a.ob.a.a.o #31
Black snub-nosed monkey	MODERN SPECIES	713		ENSRBIG00000032130	SYNJ2BP (ENSRBIG00000034666)	MED6 (ENSRBIG00000015074) #13	TTC9 (ENSRBIG00000041695) #14	MAP3K9 (ENSRBIG00000031048) #15	PCNX1 (ENSRBIG00000027567) #16	ENSRBIG00000033864	SIPA1L1 (ENSRBIG00000013622) #17	RGS6 (ENSRBIG00000038422) #18	DPF3 (ENSRBIG00000021314) #19	ENSRBIG00000038609	ENSRBIG00000040543	DCAF4 (ENSRBIG00000041818) #20	ZFYVE1 (ENSRBIG00000036107) #21	RBM25 (ENSRBIG00000039904) #22	PSEN1 (ENSRBIG00000019293) #23	PAPLN (ENSRBIG00000033248) #26	NUMB (ENSRBIG00000043156) #27	ENSRBIG00000015372	HEATR4 (ENSRBIG00000041847) #28	RIOX1 (ENSRBIG00000017859)	ENSRBIG00000031681	ENSRBIG00000023969 #31
Golden snub-nosed monkey	MODERN SPECIES	797									RGS6 (ENSRROG00000040751) #18	DPF3 (ENSRROG00000039384) #19	ENSRROG00000045287	ENSRROG00000044529	DCAF4 (ENSRROG00000035960) #20	ZFYVE1 (ENSRROG00000037742) #21	ENSRROG00000028901	RBM25 (ENSRROG00000035556) #22	PSEN1 (ENSRROG00000023023) #23	PAPLN (ENSRROG00000032324) #26	NUMB (ENSRROG00000039499) #27	ENSRROG00000035725	HEATR4 (ENSRROG00000040469) #28	RIOX1 (ENSRROG00000010218)	ENSRROG00000039724	ENSRROG00000036776 #31
Platyrrhini	ANCESTRAL SPECIES	4	ENSGT00940000161933	ENSGT00940000162712 #11	ENSGT00520000055955.c	ENSGT00830000128402	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000155162.c.b	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00910000147388	ENSGT00390000009546.a #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998	ENSGT00390000015152
Cebidae	ANCESTRAL SPECIES	3	ENSGT00940000161933	ENSGT00940000162712 #11	ENSGT00520000055955.c	ENSGT00830000128402	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000155162.c.b	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00910000147388	ENSGT00390000009546.a #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998	ENSGT00390000015152
Marmoset	DUPLICATION
Marmoset	MODERN SPECIES	1	MAP3K9 (ENSCJAG00000014758) #15	ENSCJAG00000086528	ENSCJAG00000079414	PCNX1 (ENSCJAG00000014664) #16	ENSCJAG00000061408	ENSCJAG00000080004	SIPA1L1 (ENSCJAG00000014597) #17	ENSCJAG00000085303	ENSCJAG00000070816	ENSCJAG00000073976	RGS6 (ENSCJAG00000014537) #18	DPF3 (ENSCJAG00000014522) #19	ENSCJAG00000014514 #20	ZFYVE1 (ENSCJAG00000014498) #21	ENSCJAG00000077374	ENSCJAG00000014441 #22	PSEN1 (ENSCJAG00000014387) #23	PAPLN (ENSCJAG00000014352) #26	NUMB (ENSCJAG00000014264) #27	ENSCJAG00000082842	RIOX1 (ENSCJAG00000042587)	ENSCJAG00000009908 #28	ACOT4 (ENSCJAG00000009911) #32	ENSCJAG00000037095 #34	DNAL1 (ENSCJAG00000009922) #35	PNMA1 (ENSCJAG00000042056) #36	MIDEAS (ENSCJAG00000009935) #37	PTGR2 (ENSCJAG00000011505)	ENSCJAG00000085540	ZNF410 (ENSCJAG00000020308)	FAM161B (ENSCJAG00000020363)
Marmoset	MODERN SPECIES	18	BCL2A1 (ENSCJAG00000007569)	ENSCJAG00000074804	ZFAND6 (ENSCJAG00000007572)	FAH (ENSCJAG00000007600)	ENSCJAG00000062260	ARNT2 (ENSCJAG00000007640)	ABHD17C (ENSCJAG00000007705)	CEMIP (ENSCJAG00000007708)	MESD (ENSCJAG00000048641)	TLNRD1 (ENSCJAG00000007827)	ENSCJAG00000079259	CFAP161 (ENSCJAG00000055791)	IL16 (ENSCJAG00000007856)	STARD5 (ENSCJAG00000081692)	TMC3 (ENSCJAG00000007980)	ENSCJAG00000046744 #22	ENSCJAG00000086878	ENSCJAG00000072223	ENSCJAG00000022058	MEX3B (ENSCJAG00000008043)	EFL1 (ENSCJAG00000015607)	SAXO2 (ENSCJAG00000062415)	ENSCJAG00000051686	ADAMTSL3 (ENSCJAG00000015699)	BNC1 (ENSCJAG00000015761)	HDGFL3 (ENSCJAG00000015775)	TM6SF1 (ENSCJAG00000015800)	BTBD1 (ENSCJAG00000083105)	ENSCJAG00000015877	ENSCJAG00000086251	ENSCJAG00000083892
Cebidae_a	ANCESTRAL SPECIES	4	ENSGT00940000161933	ENSGT00940000162712 #11	ENSGT00520000055955.c	ENSGT00830000128402	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000155162.c.b	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00910000147388	ENSGT00390000009546.a #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998	ENSGT00390000015152
Bolivian squirrel monkey	MODERN SPECIES	52	SYNJ2BP (ENSSBOG00000028807)	ENSSBOG00000021356	ADAM20 (ENSSBOG00000025132) #12	TTC9 (ENSSBOG00000035147) #14	MAP3K9 (ENSSBOG00000026870) #15	ENSSBOG00000027808	PCNX1 (ENSSBOG00000021906) #16	ENSSBOG00000034324	SIPA1L1 (ENSSBOG00000025880) #17	ENSSBOG00000027922	ENSSBOG00000007314	RGS6 (ENSSBOG00000029364) #18	DPF3 (ENSSBOG00000034660) #19	DCAF4 (ENSSBOG00000033529) #20	ZFYVE1 (ENSSBOG00000024876) #21	RBM25 (ENSSBOG00000034153) #22	PSEN1 (ENSSBOG00000023450) #23	PAPLN (ENSSBOG00000025394) #26	NUMB (ENSSBOG00000033352) #27	HEATR4 (ENSSBOG00000018986) #28	RIOX1 (ENSSBOG00000013673)	ENSSBOG00000034097 #31	ACOT4 (ENSSBOG00000011298) #32	ENSSBOG00000021771 #34	ENSSBOG00000022744	ENSSBOG00000025995 #35	MIDEAS (ENSSBOG00000029806) #37	PTGR2 (ENSSBOG00000026681)	ZNF410 (ENSSBOG00000032182)	ENSSBOG00000034409	COQ6 (ENSSBOG00000028801)
Capuchin	MODERN SPECIES	54	ENSCCAG00000016529	MED6 (ENSCCAG00000003359) #13	TTC9 (ENSCCAG00000025011) #14	MAP3K9 (ENSCCAG00000035688) #15	ENSCCAG00000037545	PCNX1 (ENSCCAG00000029639) #16	SNRPC (ENSCCAG00000036059)	SIPA1L1 (ENSCCAG00000030332) #17	ENSCCAG00000017345	RGS6 (ENSCCAG00000029956) #18	ENSCCAG00000021283	DPF3 (ENSCCAG00000034749) #19	DCAF4 (ENSCCAG00000033783) #20	ZFYVE1 (ENSCCAG00000031934) #21	ENSCCAG00000009724	RBM25 (ENSCCAG00000030446) #22	PSEN1 (ENSCCAG00000036998) #23	PAPLN (ENSCCAG00000032497) #26	NUMB (ENSCCAG00000029310) #27	RIOX1 (ENSCCAG00000019473)	HEATR4 (ENSCCAG00000024834) #28	ENSCCAG00000026985 #31	ACOT4 (ENSCCAG00000026334) #32	ENSCCAG00000028536	ACOT6 (ENSCCAG00000030425) #34	DNAL1 (ENSCCAG00000024968) #35	PNMA1 (ENSCCAG00000015385) #36	MIDEAS (ENSCCAG00000037089) #37	PTGR2 (ENSCCAG00000033557)	ZNF410 (ENSCCAG00000030057)	FAM161B (ENSCCAG00000032037)
Mas night monkey	MODERN SPECIES	825	TTC9 (ENSANAG00000022265) #14	MAP3K9 (ENSANAG00000001676) #15	ENSANAG00000025022	PCNX1 (ENSANAG00000020800) #16	ENSANAG00000020317	ENSANAG00000030114	SIPA1L1 (ENSANAG00000038424) #17	RGS6 (ENSANAG00000032870) #18	ENSANAG00000035122	DPF3 (ENSANAG00000024095) #19	DCAF4 (ENSANAG00000033863) #20	ZFYVE1 (ENSANAG00000019269) #21	ENSANAG00000021022	ENSANAG00000020515	ENSANAG00000020412	RBM25 (ENSANAG00000028295) #22	ENSANAG00000005418	ENSANAG00000036030	PSEN1 (ENSANAG00000026358) #23	PAPLN (ENSANAG00000021965) #26	NUMB (ENSANAG00000031899) #27	RIOX1 (ENSANAG00000018079)	HEATR4 (ENSANAG00000026083) #28	ENSANAG00000025037 #31	ACOT4 (ENSANAG00000020773) #32	ACOT6 (ENSANAG00000011051) #34	DNAL1 (ENSANAG00000030053) #35	PNMA1 (ENSANAG00000019370) #36	MIDEAS (ENSANAG00000029623) #37	PTGR2 (ENSANAG00000037046)	ZNF410 (ENSANAG00000030872)
Tarsier	MODERN SPECIES	6465														DCAF4 (ENSTSYG00000010001) #20	ZFYVE1 (ENSTSYG00000014293) #21	RBM25 (ENSTSYG00000003024) #22	PSEN1 (ENSTSYG00000008434) #23	ENSTSYG00000002063	PAPLN (ENSTSYG00000033060) #26	NUMB (ENSTSYG00000010352) #27
Euarchontoglires_A	ANCESTRAL SPECIES	3	ENSGT00940000157547	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000161933	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998	ENSGT00390000015152
Tree shrew	MODERN SPECIES	825																ENSTBEG00000010538 #22
Glires	ANCESTRAL SPECIES	12	ENSGT00940000157547	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000161933	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998	ENSGT00390000015152
Lagomorpha	ANCESTRAL SPECIES	25											ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT00390000016904 #35	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998	ENSGT00390000015152	ENSGT01100000263540.A.b	ENSGT00940000154427.A	ENSGT00940000156110
Rabbit	MODERN SPECIES	12										ENSOCUG00000012114	RGS6 (ENSOCUG00000000341) #18	ENSOCUG00000031853	DPF3 (ENSOCUG00000016740) #19	ENSOCUG00000009405 #20	ZFYVE1 (ENSOCUG00000008398) #21	RBM25 (ENSOCUG00000013737) #22	PSEN1 (ENSOCUG00000014545) #23	PAPLN (ENSOCUG00000010681) #26	NUMB (ENSOCUG00000010702) #27	ENSOCUG00000031673	RIOX1 (ENSOCUG00000021858)	HEATR4 (ENSOCUG00000005994) #28	ENSOCUG00000030890	ENSOCUG00000022543 #32	ENSOCUG00000029229 #34	DNAL1 (ENSOCUG00000007284) #35	MIDEAS (ENSOCUG00000007290) #37	PTGR2 (ENSOCUG00000006785)	ZNF410 (ENSOCUG00000006787)	FAM161B (ENSOCUG00000006791)	COQ6 (ENSOCUG00000006799)
Pika	MODERN SPECIES	589														ENSOPRG00000016720 #20	ZFYVE1 (ENSOPRG00000016734) #21	ENSOPRG00000016744 #22
Rodentia	ANCESTRAL SPECIES	3	ENSGT00940000157547	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000161933	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.a.a.c.b #31	ENSGT01050000245403.b	ENSGT01050000245403.a	ENSGT01010000222336.a.a.a.ob.a.a.c.a #31	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00940000157547	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000161933	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005.b #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a.c.b #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998	ENSGT00390000015152
Sciuridae	ANCESTRAL SPECIES	8	ENSGT00940000157547	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000161933	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005.b #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a.c.b #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998	ENSGT00390000015152
Marmotini	ANCESTRAL SPECIES	27				ENSGT00940000161933.jb	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005.b #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a.c.b.m #31	ENSGT01010000222336.a.a.a.ob.a.a.c.b.n #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998
Marmotini_b	ANCESTRAL SPECIES	31					ENSGT00940000161933.jb	ENSGT00940000162712 #11	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005.b #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a.c.b.m #31	ENSGT01010000222336.a.a.a.ob.a.a.c.b.n #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998
Arctic ground squirrel	MODERN SPECIES	8							MED6 (ENSUPAG00010016393) #13	TTC9 (ENSUPAG00010016377) #14	MAP3K9 (ENSUPAG00010016024) #15	PCNX1 (ENSUPAG00010015898) #16	SIPA1L1 (ENSUPAG00010015844) #17	RGS6 (ENSUPAG00010015605) #18	DPF3 (ENSUPAG00010015555) #19	ENSUPAG00010015527 #20	ZFYVE1 (ENSUPAG00010015501) #21	RBM25 (ENSUPAG00010015461) #22	PSEN1 (ENSUPAG00010015426) #23	PAPLN (ENSUPAG00010015337) #26	NUMB (ENSUPAG00010015200) #27	RIOX1 (ENSUPAG00010015192)	ENSUPAG00010015167 #28	ENSUPAG00010015131 #31	ACOT4 (ENSUPAG00010015117) #32	ACOT6 (ENSUPAG00010015106) #34	DNAL1 (ENSUPAG00010015067) #35	PNMA1 (ENSUPAG00010015061) #36	MIDEAS (ENSUPAG00010014994) #37	ENSUPAG00010014987	PTGR2 (ENSUPAG00010014963)	ZNF410 (ENSUPAG00010014867)	FAM161B (ENSUPAG00010014838)
Squirrel	MODERN SPECIES	88					ENSSTOG00000022855	ADAM21 (ENSSTOG00000028832) #11	MED6 (ENSSTOG00000014084) #13	MAP3K9 (ENSSTOG00000014094) #15	PCNX1 (ENSSTOG00000013614) #16	ENSSTOG00000030589	SIPA1L1 (ENSSTOG00000010105) #17	RGS6 (ENSSTOG00000013412) #18	DPF3 (ENSSTOG00000011091) #19	ENSSTOG00000020210 #20	ZFYVE1 (ENSSTOG00000011109) #21	RBM25 (ENSSTOG00000011117) #22	PSEN1 (ENSSTOG00000003845) #23	PAPLN (ENSSTOG00000003857) #26	ENSSTOG00000003900 #27	RIOX1 (ENSSTOG00000024278)	HEATR4 (ENSSTOG00000007745) #28	ENSSTOG00000032187 #31	ENSSTOG00000003345 #31	ACOT4 (ENSSTOG00000003338) #32	ACOT6 (ENSSTOG00000003091) #34	DNAL1 (ENSSTOG00000000420) #35	ENSSTOG00000029464	PNMA1 (ENSSTOG00000000422) #36	MIDEAS (ENSSTOG00000000423) #37	PTGR2 (ENSSTOG00000008590)	ZNF410 (ENSSTOG00000024235)
Alpin marmot	MODERN SPECIES	1	ENSMMMG00000015044	RNASE4 (ENSMMMG00000015054)	ANG (ENSMMMG00000015059)	ENSMMMG00000015065	ENSMMMG00000015068	ADAM21 (ENSMMMG00000015081) #11	ADAM20 (ENSMMMG00000015097) #12	MED6 (ENSMMMG00000015151) #13	MAP3K9 (ENSMMMG00000015173) #15	PCNX1 (ENSMMMG00000015257) #16	SIPA1L1 (ENSMMMG00000015319) #17	RGS6 (ENSMMMG00000015497) #18	DPF3 (ENSMMMG00000015579) #19	ENSMMMG00000015602 #20	ZFYVE1 (ENSMMMG00000015623) #21	RBM25 (ENSMMMG00000015650) #22	PSEN1 (ENSMMMG00000015676) #23	PAPLN (ENSMMMG00000015699) #26	NUMB (ENSMMMG00000015813) #27	RIOX1 (ENSMMMG00000015975)	ENSMMMG00000015982 #31	ENSMMMG00000015989 #31	ENSMMMG00000015998 #31	ENSMMMG00000016020 #34	DNAL1 (ENSMMMG00000016024) #35	PNMA1 (ENSMMMG00000016038) #36	MIDEAS (ENSMMMG00000016040) #37	PTGR2 (ENSMMMG00000016067)	ENSMMMG00000016079	ZNF410 (ENSMMMG00000016081)	FAM161B (ENSMMMG00000016102)
Eurasian red squirrel	MODERN SPECIES	11	SYNJ2BP (ENSSVLG00005010806)	ENSSVLG00005010758	ADAM21 (ENSSVLG00005010725) #11	ADAM20 (ENSSVLG00005010699) #12	ENSSVLG00005010644 #13	TTC9 (ENSSVLG00005010601) #14	MAP3K9 (ENSSVLG00005010363) #15	PCNX1 (ENSSVLG00005009899) #16	ENSSVLG00005009795	SIPA1L1 (ENSSVLG00005009679) #17	ENSSVLG00005009607	RGS6 (ENSSVLG00005008662) #18	DPF3 (ENSSVLG00005008293) #19	ENSSVLG00005008049 #20	ZFYVE1 (ENSSVLG00005007958) #21	RBM25 (ENSSVLG00005007885) #22	PSEN1 (ENSSVLG00005007728) #23	PAPLN (ENSSVLG00005007348) #26	NUMB (ENSSVLG00005007168) #27	RIOX1 (ENSSVLG00005007089)	ENSSVLG00005007042 #28	ENSSVLG00005007000 #31	ENSSVLG00005006975	ENSSVLG00005006698 #31	ENSSVLG00005006583	ACOT4 (ENSSVLG00005006548) #32	ENSSVLG00005006522 #34	DNAL1 (ENSSVLG00005006438) #35	PNMA1 (ENSSVLG00005006415) #36	MIDEAS (ENSSVLG00005006379) #37	PTGR2 (ENSSVLG00005006327)
Hystricomorpha	ANCESTRAL SPECIES	33	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000162712 #11	ENSGT00940000161933	ENSGT00390000017666.p #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005.a #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a.c.b #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998	ENSGT00390000015152
Hystricomorpha_a	ANCESTRAL SPECIES	27	ENSGT00950000182808.a.a.b.a	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000161933	ENSGT00390000017666.p #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005.a #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a.c.b #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998	ENSGT00390000015152
Guinea pig	MODERN SPECIES	20	SMOC1 (ENSCPOG00000008973)	SLC8A3 (ENSCPOG00000008979)	COX16 (ENSCPOG00000038104)	SYNJ2BP (ENSCPOG00000023967)	ENSCPOG00000026757	MED6 (ENSCPOG00000012529) #13	TTC9 (ENSCPOG00000001801) #14	MAP3K9 (ENSCPOG00000001803) #15	PCNX1 (ENSCPOG00000001806) #16	ENSCPOG00000033708	SIPA1L1 (ENSCPOG00000013071) #17	RGS6 (ENSCPOG00000007309) #18	DPF3 (ENSCPOG00000007322) #19	ENSCPOG00000013878 #20	ZFYVE1 (ENSCPOG00000013880) #21	RBM25 (ENSCPOG00000002479) #22	PSEN1 (ENSCPOG00000035027) #23	PAPLN (ENSCPOG00000019279) #26	NUMB (ENSCPOG00000034984) #27	RIOX1 (ENSCPOG00000024797)	ENSCPOG00000038505 #31	HEATR4 (ENSCPOG00000001833) #28	ACOT4 (ENSCPOG00000036993) #32	ACOT6 (ENSCPOG00000032534) #34	DNAL1 (ENSCPOG00000010655) #35	PNMA1 (ENSCPOG00000010657) #36	MIDEAS (ENSCPOG00000010659) #37	PTGR2 (ENSCPOG00000027073)	ZNF410 (ENSCPOG00000009601)	FAM161B (ENSCPOG00000040022)	COQ6 (ENSCPOG00000009610)
Hystricomorpha_b	ANCESTRAL SPECIES	46	ENSGT00390000001277	ENSGT00940000155077.e.a	ENSGT00940000158237	ENSGT00940000159561	ENSGT00390000011854	ENSGT00530000064222.b	ENSGT00940000161472 #14	ENSGT00390000017666.p #13	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005.a #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a.c.b #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998	ENSGT00390000015152	ENSGT01100000263540.A.b
Long-tailed chinchilla	MODERN SPECIES	230								ENSCLAG00000006511 #13	MAP3K9 (ENSCLAG00000006444) #15	PCNX1 (ENSCLAG00000006042) #16	SIPA1L1 (ENSCLAG00000005617) #17	RGS6 (ENSCLAG00000004860) #18	DPF3 (ENSCLAG00000004345) #19	ENSCLAG00000004165 #20	ZFYVE1 (ENSCLAG00000004097) #21	RBM25 (ENSCLAG00000003977) #22	PSEN1 (ENSCLAG00000005284) #23	PAPLN (ENSCLAG00000004775) #26	ENSCLAG00000004464 #27	ENSCLAG00000004315	RIOX1 (ENSCLAG00000004260)	HEATR4 (ENSCLAG00000004180) #28	ENSCLAG00000004124 #31	ACOT4 (ENSCLAG00000004063) #32	ENSCLAG00000004019 #31	ENSCLAG00000003947 #34	DNAL1 (ENSCLAG00000003917) #35	MIDEAS (ENSCLAG00000003802) #37	PTGR2 (ENSCLAG00000003701)	ZNF410 (ENSCLAG00000003640)	FAM161B (ENSCLAG00000003575)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	30	ENSHGLG00000037239	ENSHGLG00000039108	ENSHGLG00000042124	ENSHGLG00000034006	ENSHGLG00000036530	ENSHGLG00000014738	ENSHGLG00000015295	ENSHGLG00000039067	ENSHGLG00000013762	ENSHGLG00000020939	TEDC1 (ENSHGLG00000015063)	ENSHGLG00000015816	ENSHGLG00000017645	ENSHGLG00000014183	ENSHGLG00000044556	ENSHGLG00000033226 #22	ENSHGLG00000047803	ENSHGLG00000044136	ENSHGLG00000006838	ENSHGLG00000050892	ENSHGLG00000038079	ENSHGLG00000004952	ENSHGLG00000044228	ENSHGLG00000039423	ENSHGLG00000047609	ENSHGLG00000035332	ENSHGLG00000007530	ENSHGLG00000031918	ENSHGLG00000037251	ENSHGLG00000017159	ENSHGLG00000040546
Naked mole-rat female	MODERN SPECIES	18	MED6 (ENSHGLG00000019384) #13	ENSHGLG00000010126	TTC9 (ENSHGLG00000033470) #14	MAP3K9 (ENSHGLG00000014001) #15	PCNX1 (ENSHGLG00000012007) #16	SIPA1L1 (ENSHGLG00000011768) #17	ENSHGLG00000041959	ENSHGLG00000036909	RGS6 (ENSHGLG00000012031) #18	ENSHGLG00000048633	DPF3 (ENSHGLG00000006635) #19	ENSHGLG00000042994 #20	ENSHGLG00000047889	ZFYVE1 (ENSHGLG00000015923) #21	ENSHGLG00000035871	ENSHGLG00000014745 #22	PSEN1 (ENSHGLG00000044979) #23	PAPLN (ENSHGLG00000013495) #26	ENSHGLG00000017752 #27	ENSHGLG00000039431	ENSHGLG00000039363	ENSHGLG00000049066 #28	RIOX1 (ENSHGLG00000034391)	ENSHGLG00000047596 #31	ENSHGLG00000048609	ACOT6 (ENSHGLG00000040633) #34	ENSHGLG00000013635	DNAL1 (ENSHGLG00000013059) #35	PNMA1 (ENSHGLG00000050390) #36	MIDEAS (ENSHGLG00000012075) #37	PTGR2 (ENSHGLG00000009670)
Rodentia_B	ANCESTRAL SPECIES	7	ENSGT00950000182808.a.a.b.a	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000162712 #11	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.a.a.c.b #31	ENSGT01050000245403.b	ENSGT01050000245403.a	ENSGT01010000222336.a.a.a.ob.a.a.c.a #31	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793
Myomorpha	ANCESTRAL SPECIES	7	ENSGT00950000182808.a.a.b.a	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000162712 #11	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.a.a.c.b #31	ENSGT01050000245403.b	ENSGT01050000245403.a	ENSGT01010000222336.a.a.a.ob.a.a.c.a #31	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793
Muroidea	ANCESTRAL SPECIES	16	ENSGT00950000182808.a.a.b.a	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000162712 #11	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a.c.b #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.a.a.c.a #31	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998
Muroidea_A	ANCESTRAL SPECIES	15	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00940000161933	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000162712 #11	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a.c.b #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.a.a.c.a.b #31	ENSGT01050000245403.a	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #31	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793
Cricetidae	ANCESTRAL SPECIES	17	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00940000161933	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000162712 #11	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a.c.b.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.a.a.c.b.b #31	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #31	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098
Cricetidae_B	ANCESTRAL SPECIES	18	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00940000161933	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000162712 #11	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a.c.b.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.a.a.c.b.b #31	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #31	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098
Northern American deer mouse	MODERN SPECIES	5	Smoc1 (ENSPEMG00000020096)	Slc8a3 (ENSPEMG00000007532)	ENSPEMG00000026090	Cox16 (ENSPEMG00000003301)	ENSPEMG00000001343	Adam21 (ENSPEMG00000000549) #11	Med6 (ENSPEMG00000000191) #13	Ttc9 (ENSPEMG00000028070) #14	Map3k9 (ENSPEMG00000018982) #15	Pcnx (ENSPEMG00000018423) #16	Sipa1l1 (ENSPEMG00000015088) #17	Rgs6 (ENSPEMG00000005178) #18	Dpf3 (ENSPEMG00000014009) #19	Dcaf4 (ENSPEMG00000009925) #20	Zfyve1 (ENSPEMG00000008691) #21	Rbm25 (ENSPEMG00000008001) #22	Psen1 (ENSPEMG00000006667) #23	Papln (ENSPEMG00000000670) #26	Numb (ENSPEMG00000018950) #27	Riox1 (ENSPEMG00000018431)	Heatr4 (ENSPEMG00000010857) #28	ENSPEMG00000011640 #31	ENSPEMG00000007692 #31	Acot4 (ENSPEMG00000024969) #32	ENSPEMG00000009464 #31	ENSPEMG00000007003 #31	Acot6 (ENSPEMG00000020726) #34	ENSPEMG00000027213	ENSPEMG00000030670 #35	ENSPEMG00000025553	Pnma1 (ENSPEMG00000001767) #36
Prairie vole	MODERN SPECIES		Slc10a1 (ENSMOCG00000015201)	Smoc1 (ENSMOCG00000019851)	Slc8a3 (ENSMOCG00000021316)	Cox16 (ENSMOCG00000004091)	Synj2bp (ENSMOCG00000017570)	Med6 (ENSMOCG00000022028) #13	Ttc9 (ENSMOCG00000018568) #14	Map3k9 (ENSMOCG00000008905) #15	Pcnx (ENSMOCG00000016626) #16	ENSMOCG00000022199	Sipa1l1 (ENSMOCG00000020326) #17	Rgs6 (ENSMOCG00000005512) #18	Dpf3 (ENSMOCG00000003784) #19	Dcaf4 (ENSMOCG00000015020) #20	Zfyve1 (ENSMOCG00000022979) #21	Rbm25 (ENSMOCG00000001935) #22	ENSMOCG00000005921	Psen1 (ENSMOCG00000009775) #23	ENSMOCG00000005015	Papln (ENSMOCG00000001461) #26	Numb (ENSMOCG00000022280) #27	Riox1 (ENSMOCG00000007570)	Heatr4 (ENSMOCG00000015139) #28	ENSMOCG00000005730 #31	ENSMOCG00000021013	ENSMOCG00000005600 #31	Acot4 (ENSMOCG00000013343) #32	ENSMOCG00000018416 #31	Acot5 (ENSMOCG00000000977) #31	Acot6 (ENSMOCG00000004025) #34	Dnal1 (ENSMOCG00000022267) #35
Cricetinae	ANCESTRAL SPECIES	11	ENSGT00950000182808.a.a.b.a	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000162712 #11	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00900000143211	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a.c.b.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.a.a.c.b.b #31	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #31	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793
Chinese hamster chok1gshd	MODERN SPECIES	2	Cox16 (ENSCGRG00001019589)	Synj2bp (ENSCGRG00001016968)	Adam21 (ENSCGRG00001011315) #11	ENSCGRG00001013217	Med6 (ENSCGRG00001003723) #13	Ttc9 (ENSCGRG00001023468) #14	Map3k9 (ENSCGRG00001014451) #15	Pcnx (ENSCGRG00001005677) #16	Sipa1l1 (ENSCGRG00001001236) #17	ENSCGRG00001011338	Rgs6 (ENSCGRG00001021356) #18	Dpf3 (ENSCGRG00001011525) #19	Dcaf4 (ENSCGRG00001000557) #20	Zfyve1 (ENSCGRG00001024058) #21	ENSCGRG00001023149	Rbm25 (ENSCGRG00001020817) #22	Psen1 (ENSCGRG00001006926) #23	Papln (ENSCGRG00001003202) #26	ENSCGRG00001000963	Numb (ENSCGRG00001016054) #27	ENSCGRG00001014450	ENSCGRG00001010571	ENSCGRG00001011878	Riox1 (ENSCGRG00001010518)	Heatr4 (ENSCGRG00001008018) #28	ENSCGRG00001005504 #31	ENSCGRG00001000843 #31	Acot4 (ENSCGRG00001007771) #32	ENSCGRG00001011559 #31	ENSCGRG00001023275 #31	ENSCGRG00001020145 #31
Golden Hamster	MODERN SPECIES	652	Slc8a3 (ENSMAUG00000012390)	Synj2bp (ENSMAUG00000002533)	ENSMAUG00000013912	Adam21 (ENSMAUG00000008078) #11	Med6 (ENSMAUG00000007051) #13	Ttc9 (ENSMAUG00000012771) #14	Map3k9 (ENSMAUG00000020034) #15	Pcnx (ENSMAUG00000015734) #16	ENSMAUG00000005000 #17	ENSMAUG00000008287 #17	Rgs6 (ENSMAUG00000021028) #18	ENSMAUG00000003690	Dpf3 (ENSMAUG00000022055) #19	Dcaf4 (ENSMAUG00000016053) #20	Zfyve1 (ENSMAUG00000001400) #21	ENSMAUG00000017751 #22	ENSMAUG00000015673	Psen1 (ENSMAUG00000004090) #23	Papln (ENSMAUG00000015070) #26	Numb (ENSMAUG00000017202) #27	ENSMAUG00000021947	Riox1 (ENSMAUG00000019549)	Heatr4 (ENSMAUG00000015300) #28	ENSMAUG00000007215 #31
Murinae	ANCESTRAL SPECIES	8	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00940000161933	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000162712 #11	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a.c.b #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.a.a.c.a.b #31	ENSGT01050000245403.a	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #31	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793
Mus	ANCESTRAL SPECIES	10	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00940000161933	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000162712 #11	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a.c.b.d #31	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.ob.a.a.c.b.c #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.a.a.c.a.b #31	ENSGT01050000245403.a	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #31	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37
Mus_A	ANCESTRAL SPECIES	17	ENSGT00940000157547	ENSGT00940000161933	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000162712 #11	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000156726.f	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a.c.b.d #31	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.ob.a.a.c.b.c #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.a.a.c.a.b #31	ENSGT01050000245403.a	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #31	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37
Mus_B	ANCESTRAL SPECIES	17	ENSGT00940000157547	ENSGT00940000161933.hb.a	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000162712 #11	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000156726.f	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a.c.b.d #31	ENSGT00390000000083.a	ENSGT00900000143211	ENSGT01010000222336.a.a.a.ob.a.a.c.b.c #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.a.a.c.a.b #31	ENSGT01050000245403.a	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #31	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36
Mus_C	ANCESTRAL SPECIES	11	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000162712 #11	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000156726.f	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a.c.b.d #31	ENSGT00390000000083.a	ENSGT00900000143211	ENSGT01010000222336.a.a.a.ob.a.a.c.b.c #31	ENSGT01050000245403.b	ENSGT01010000222336.a.a.a.ob.a.a.c.a.b #31	ENSGT01050000245403.a	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #31	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36
Steppe mouse	MODERN SPECIES	3303		ENSMSIG00000026023	Adam21 (ENSMSIG00000026079) #11	Med6 (ENSMSIG00000026084) #13	Ttc9 (ENSMSIG00000026125) #14	Map3k9 (ENSMSIG00000026137) #15	Pcnx (ENSMSIG00000026173) #16	Sipa1l1 (ENSMSIG00000000195) #17	ENSMSIG00000000341	ENSMSIG00000000376	Rgs6 (ENSMSIG00000000514) #18	Dpf3 (ENSMSIG00000001852) #19	Dcaf4 (ENSMSIG00000001923) #20	Zfyve1 (ENSMSIG00000001995) #21	ENSMSIG00000002025	Rbm25 (ENSMSIG00000002048) #22	Psen1 (ENSMSIG00000002158) #23	Papln (ENSMSIG00000002234) #26	ENSMSIG00000002517 #27	Heatr4 (ENSMSIG00000002642) #28	Riox1 (ENSMSIG00000002696)	Acot1 (ENSMSIG00000002711) #31	Acot3 (ENSMSIG00000002760) #31	ENSMSIG00000002815	ENSMSIG00000002825	Acot5 (ENSMSIG00000002856) #31	Acot6 (ENSMSIG00000002911) #34	Dnal1 (ENSMSIG00000002943) #35	Pnma1 (ENSMSIG00000003016) #36	Mideas (ENSMSIG00000003037) #37	Ptgr2 (ENSMSIG00000003090)
spretus	MODERN SPECIES	3	Slc8a3 (MGP_SPRETEiJ_G0018751)	MGP_SPRETEiJ_G0018752	Cox16 (MGP_SPRETEiJ_G0018753)	MGP_SPRETEiJ_G0018754	Adam21 (MGP_SPRETEiJ_G0018755) #11	Med6 (MGP_SPRETEiJ_G0018756) #13	Ttc9 (MGP_SPRETEiJ_G0018757) #14	Map3k9 (MGP_SPRETEiJ_G0018758) #15	Pcnx (MGP_SPRETEiJ_G0018759) #16	Sipa1l1 (MGP_SPRETEiJ_G0018760) #17	MGP_SPRETEiJ_G0018761	Rgs6 (MGP_SPRETEiJ_G0018762) #18	Dpf3 (MGP_SPRETEiJ_G0018763) #19	Dcaf4 (MGP_SPRETEiJ_G0018764) #20	Zfyve1 (MGP_SPRETEiJ_G0018765) #21	MGP_SPRETEiJ_G0018766 #22	Psen1 (MGP_SPRETEiJ_G0018767) #23	Papln (MGP_SPRETEiJ_G0018768) #26	Numb (MGP_SPRETEiJ_G0018769) #27	Riox1 (MGP_SPRETEiJ_G0018770)	MGP_SPRETEiJ_G0018771	Heatr4 (MGP_SPRETEiJ_G0018772) #28	MGP_SPRETEiJ_G0018773 #31	MGP_SPRETEiJ_G0018774 #31	MGP_SPRETEiJ_G0018775 #31	Acot3 (MGP_SPRETEiJ_G0018776) #31	Acot5 (MGP_SPRETEiJ_G0018777) #31	MGP_SPRETEiJ_G0018778 #31	Dnal1 (MGP_SPRETEiJ_G0018779) #35	Pnma1 (MGP_SPRETEiJ_G0018780) #36	Mideas (MGP_SPRETEiJ_G0018781) #37
Mouse	MODERN SPECIES	3	Gm20498 (ENSMUSG00000021139)	Cox16 (ENSMUSG00000091803)	Gm4787 (ENSMUSG00000072974)	Adam4 (ENSMUSG00000072972)	Synj2bp (ENSMUSG00000090935)	Adam21 (ENSMUSG00000008438) #11	Med6 (ENSMUSG00000002679) #13	Ttc9 (ENSMUSG00000042734) #14	Map3k9 (ENSMUSG00000042724) #15	Pcnx (ENSMUSG00000021140) #16	Sipa1l1 (ENSMUSG00000042700) #17	Rgs6 (ENSMUSG00000021219) #18	Dpf3 (ENSMUSG00000021221) #19	Dcaf4 (ENSMUSG00000021222) #20	Zfyve1 (ENSMUSG00000042628) #21	Rbm25 (ENSMUSG00000010608) #22	Psen1 (ENSMUSG00000019969) #23	Papln (ENSMUSG00000021223) #26	Numb (ENSMUSG00000021224) #27	Riox1 (ENSMUSG00000046791)	Heatr4 (ENSMUSG00000090843) #28	Acot2 (ENSMUSG00000021226) #31	Acot1 (ENSMUSG00000072949) #31	Acot4 (ENSMUSG00000052392) #32	Gm49366 (ENSMUSG00000113475)	Acot3 (ENSMUSG00000021228) #31	Acot5 (ENSMUSG00000042540) #31	Acot6 (ENSMUSG00000043487) #34	Dnal1 (ENSMUSG00000042523) #35	Pnma1 (ENSMUSG00000054383) #36	Mideas (ENSMUSG00000042507) #37
Ryukyu mouse	MODERN SPECIES	3	Slc8a3 (MGP_CAROLIEiJ_G0017906)	MGP_CAROLIEiJ_G0017907	Cox16 (MGP_CAROLIEiJ_G0017908)	MGP_CAROLIEiJ_G0017909	Adam21 (MGP_CAROLIEiJ_G0017910) #11	Med6 (MGP_CAROLIEiJ_G0017911) #13	Ttc9 (MGP_CAROLIEiJ_G0017912) #14	Map3k9 (MGP_CAROLIEiJ_G0017913) #15	Pcnx (MGP_CAROLIEiJ_G0017914) #16	Sipa1l1 (MGP_CAROLIEiJ_G0017915) #17	MGP_CAROLIEiJ_G0017916	Rgs6 (MGP_CAROLIEiJ_G0017917) #18	Dpf3 (MGP_CAROLIEiJ_G0017918) #19	Dcaf4 (MGP_CAROLIEiJ_G0017919) #20	Zfyve1 (MGP_CAROLIEiJ_G0017920) #21	Rbm25 (MGP_CAROLIEiJ_G0017921) #22	Psen1 (MGP_CAROLIEiJ_G0017922) #23	Papln (MGP_CAROLIEiJ_G0017923) #26	Numb (MGP_CAROLIEiJ_G0017924) #27	Riox1 (MGP_CAROLIEiJ_G0017925)	MGP_CAROLIEiJ_G0017926	Heatr4 (MGP_CAROLIEiJ_G0017927) #28	Acot4 (MGP_CAROLIEiJ_G0017928) #32	MGP_CAROLIEiJ_G0017929 #31	MGP_CAROLIEiJ_G0017930 #31	Acot3 (MGP_CAROLIEiJ_G0017931) #31	Acot5 (MGP_CAROLIEiJ_G0017932) #31	Acot6 (MGP_CAROLIEiJ_G0017933) #34	Dnal1 (MGP_CAROLIEiJ_G0017934) #35	Pnma1 (MGP_CAROLIEiJ_G0017935) #36	Mideas (MGP_CAROLIEiJ_G0017936) #37
Shrew mouse	MODERN SPECIES	20	Slc8a3 (MGP_PahariEiJ_G0029662)	MGP_PahariEiJ_G0029663	MGP_PahariEiJ_G0029664	Cox16 (MGP_PahariEiJ_G0029665)	Synj2bp (MGP_PahariEiJ_G0029666)	Adam21 (MGP_PahariEiJ_G0029667) #11	Med6 (MGP_PahariEiJ_G0029668) #13	Ttc9 (MGP_PahariEiJ_G0029669) #14	Map3k9 (MGP_PahariEiJ_G0029670) #15	Pcnx (MGP_PahariEiJ_G0029671) #16	Sipa1l1 (MGP_PahariEiJ_G0029672) #17	Rgs6 (MGP_PahariEiJ_G0029673) #18	Dpf3 (MGP_PahariEiJ_G0029674) #19	Dcaf4 (MGP_PahariEiJ_G0029675) #20	Zfyve1 (MGP_PahariEiJ_G0029676) #21	Rbm25 (MGP_PahariEiJ_G0029677) #22	Psen1 (MGP_PahariEiJ_G0029678) #23	Papln (MGP_PahariEiJ_G0029679) #26	Numb (MGP_PahariEiJ_G0029680) #27	Riox1 (MGP_PahariEiJ_G0029681)	MGP_PahariEiJ_G0029682	Heatr4 (MGP_PahariEiJ_G0029683) #28	Or8b47 (MGP_PahariEiJ_G0029684)	MGP_PahariEiJ_G0029685	MGP_PahariEiJ_G0029686	MGP_PahariEiJ_G0029687 #31	MGP_PahariEiJ_G0029688 #31	Acot4 (MGP_PahariEiJ_G0029689) #32	MGP_PahariEiJ_G0029690 ##34	Acot5 (MGP_PahariEiJ_G0029691) #31	Acot6 (MGP_PahariEiJ_G0029692) #34
Rat	DUPLICATION
Rat	MODERN SPECIES	16	ENSRNOG00000067664	Smoc1 (ENSRNOG00000005998)	Slc8a3 (ENSRNOG00000029871)	Cox16 (ENSRNOG00000047115)	Synj2bp (ENSRNOG00000006399)	LOC103690152 (ENSRNOG00000047682) #11	Med6 (ENSRNOG00000006976) #13	Ttc9 (ENSRNOG00000007254) #14	Map3k9 (ENSRNOG00000007271) #15	Pcnx1 (ENSRNOG00000007459) #16	Sipa1l1 (ENSRNOG00000007646) #17	Rgs6 (ENSRNOG00000008082) #18	Dpf3 (ENSRNOG00000008086) #19	Dcaf4 (ENSRNOG00000008399) #20	Zfyve1 (ENSRNOG00000008614) #21	Rbm25 (ENSRNOG00000002874) #22	Psen1 (ENSRNOG00000009110) #23	Papln (ENSRNOG00000009448) #26	Numb (ENSRNOG00000009653) #27	Heatr4 (ENSRNOG00000038183) #28	Riox1 (ENSRNOG00000010126)	Acot2 (ENSRNOG00000010134) #31	Acot1 (ENSRNOG00000055221) #31	Acot4 (ENSRNOG00000046864) #32	Acot3 (ENSRNOG00000027960) #31	ENSRNOG00000067599	Acot5 (ENSRNOG00000032508) #31	Acot3 (ENSRNOG00000053460) #31	Acot6 (ENSRNOG00000029637) #34	Dnal1 (ENSRNOG00000042333) #35	Pnma1 (ENSRNOG00000010553) #36
Rat	MODERN SPECIES	1	Emp2 (ENSRNOG00000002664)	Atf7ip2 (ENSRNOG00000025522)	Rpl39l (ENSRNOG00000032300)	Grin2a (ENSRNOG00000033942)	Hapstr1 (ENSRNOG00000002545)	Usp7 (ENSRNOG00000025496)	Litafd (ENSRNOG00000055413)	Carhsp1 (ENSRNOG00000002610)	Pmm2 (ENSRNOG00000002615)	Tmem186 (ENSRNOG00000027087)	Abat (ENSRNOG00000002636)	Mettl22 (ENSRNOG00000002714)	Tmem114 (ENSRNOG00000002768)	ENSRNOG00000064673	Rbfox1 (ENSRNOG00000002827)	Rbm25l1 (ENSRNOG00000064553) #22	ENSRNOG00000069050	Eef2kmt (ENSRNOG00000002876)	Alg1 (ENSRNOG00000002883)	RGD1565166 (ENSRNOG00000021796)	Nagpa (ENSRNOG00000002895)	Sec14l5 (ENSRNOG00000002917)	Ppl (ENSRNOG00000002930)	Ubn1 (ENSRNOG00000003019)	Glyr1 (ENSRNOG00000003065)	Rogdi (ENSRNOG00000003125)	Septin12 (ENSRNOG00000003137)	Dnaaf8 (ENSRNOG00000028075)	Anks3 (ENSRNOG00000003186)	Nudt16l1 (ENSRNOG00000003224)	Mgrn1 (ENSRNOG00000003234)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1502											Rgs6 (ENSNGAG00000015965) #18	Dpf3 (ENSNGAG00000018079) #19	Dcaf4 (ENSNGAG00000012972) #20	Zfyve1 (ENSNGAG00000009405) #21	ENSNGAG00000019959	Rbm25 (ENSNGAG00000018465) #22	Psen1 (ENSNGAG00000017181) #23	Papln (ENSNGAG00000019406) #26	ENSNGAG00000012297 #27	Riox1 (ENSNGAG00000003031)	ENSNGAG00000001266 #31	ENSNGAG00000001269 #31	Acot4 (ENSNGAG00000010998) #32	ENSNGAG00000016652 #31	Acot6 (ENSNGAG00000015805) #34	Dnal1 (ENSNGAG00000010152) #35	Pnma1 (ENSNGAG00000015203) #36	Mideas (ENSNGAG00000008541) #37	ENSNGAG00000000298	Ptgr2 (ENSNGAG00000016685)	Zfp410 (ENSNGAG00000000633)
Kangaroo rat	MODERN SPECIES	321	Srsf5 (ENSDORG00000003989)	Smoc1 (ENSDORG00000003216)	Slc8a3 (ENSDORG00000003218)	Cox16 (ENSDORG00000029887)	Synj2bp (ENSDORG00000010450)	Med6 (ENSDORG00000014901) #13	Ttc9 (ENSDORG00000027151) #14	Map3k9 (ENSDORG00000011084) #15	Pcnx (ENSDORG00000015586) #16	Sipa1l1 (ENSDORG00000014657) #17	ENSDORG00000023931	Rgs6 (ENSDORG00000015367) #18	Dpf3 (ENSDORG00000007820) #19	Dcaf4 (ENSDORG00000002888) #20	Zfyve1 (ENSDORG00000015230) #21	Rbm25 (ENSDORG00000013247) #22	Psen1 (ENSDORG00000001780) #23	Papln (ENSDORG00000007325) #26	Numb (ENSDORG00000007326) #27	Riox1 (ENSDORG00000028870)	Heatr4 (ENSDORG00000005873) #28	ENSDORG00000013571 #31	ENSDORG00000005537 #31	ENSDORG00000013097 #31	ENSDORG00000000064 #34	Dnal1 (ENSDORG00000015187) #35	ENSDORG00000025611 ##36	Mideas (ENSDORG00000015681) #37	Ptgr2 (ENSDORG00000024075)	Zfp410 (ENSDORG00000009293)	Fam161b (ENSDORG00000009295)
Laurasiatheria	ANCESTRAL SPECIES	3	ENSGT00830000128402	ENSGT00940000161933	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00910000147388	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000166770	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01050000245403.b	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098
Laurasiatheria_a	ANCESTRAL SPECIES	2	ENSGT00830000128402	ENSGT00940000161933	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00910000147388	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000166770	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01050000245403.b	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098
Laurasiatheria_b	ANCESTRAL SPECIES	3	ENSGT00830000128402	ENSGT00940000161933	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00910000147388	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000166770	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000013207 #28	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT01010000222336.a.a.a.pb ##34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098
Laurasiatheria_c	ANCESTRAL SPECIES	1	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000161933	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00910000147388	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000013207 #28	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT01010000222336.a.a.a.pb ##34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998
Equus	ANCESTRAL SPECIES	17	ENSGT00830000128402	ENSGT00940000161933.s	ENSGT00940000162712 #11	ENSGT00940000161067.t #12	ENSGT00940000161067.s #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00910000147388	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000013207 #28	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998	ENSGT00390000015152
Horse	MODERN SPECIES	16	ENSECAG00000058731	ENSECAG00000041675 #12	ADAM20 (ENSECAG00000004147) #12	TTC9 (ENSECAG00000030290) #14	MAP3K9 (ENSECAG00000024287) #15	PCNX1 (ENSECAG00000000934) #16	ENSECAG00000034616	SIPA1L1 (ENSECAG00000024286) #17	ENSECAG00000049526	RGS6 (ENSECAG00000011760) #18	ENSECAG00000046282	DPF3 (ENSECAG00000024660) #19	ENSECAG00000053109	ENSECAG00000015480 #20	ZFYVE1 (ENSECAG00000023029) #21	RBM25 (ENSECAG00000013395) #22	PSEN1 (ENSECAG00000004387) #23	PAPLN (ENSECAG00000007861) #26	NUMB (ENSECAG00000016684) #27	HEATR4 (ENSECAG00000009392) #28	RIOX1 (ENSECAG00000056153)	ENSECAG00000033024 #31	ENSECAG00000049659 #31	ENSECAG00000051326 #31	ACOT4 (ENSECAG00000009756) #32	ACOT6 (ENSECAG00000016290) #34	DNAL1 (ENSECAG00000033122) #35	PNMA1 (ENSECAG00000004251) #36	MIDEAS (ENSECAG00000005161) #37	PTGR2 (ENSECAG00000013284)	ZNF410 (ENSECAG00000014531)
Donkey	MODERN SPECIES	27	ENSEASG00005033803	ENSEASG00005004827 #11	ENSEASG00005034533	ENSEASG00005004358 #12	MED6 (ENSEASG00005004056) #13	ENSEASG00005024391	ENSEASG00005028455 #12	TTC9 (ENSEASG00005023953) #14	MAP3K9 (ENSEASG00005004074) #15	PCNX1 (ENSEASG00005004120) #16	SIPA1L1 (ENSEASG00005004694) #17	RGS6 (ENSEASG00005004707) #18	DPF3 (ENSEASG00005004725) #19	ENSEASG00005004728 #20	ZFYVE1 (ENSEASG00005004734) #21	RBM25 (ENSEASG00005004739) #22	PSEN1 (ENSEASG00005004749) #23	PAPLN (ENSEASG00005004755) #26	NUMB (ENSEASG00005004756) #27	HEATR4 (ENSEASG00005004763) #28	ENSEASG00005035022 #31	ENSEASG00005011607 #32	ENSEASG00005026716 #31	ENSEASG00005036740 #31	ENSEASG00005033187 #32	ENSEASG00005037069 #34	DNAL1 (ENSEASG00005011612) #35	PNMA1 (ENSEASG00005011614) #36	MIDEAS (ENSEASG00005011617) #37	PTGR2 (ENSEASG00005011622)	ZNF410 (ENSEASG00005011626)
Chiroptera	ANCESTRAL SPECIES	15	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000161933	ENSGT00940000162712 #11	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT01010000222336.a.a.a.pb ##34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998
Megabat	MODERN SPECIES	182														ENSPVAG00000003913 #20	ZFYVE1 (ENSPVAG00000003922) #21	RBM25 (ENSPVAG00000003931) #22	PSEN1 (ENSPVAG00000003942) #23	PAPLN (ENSPVAG00000003948) #26	NUMB (ENSPVAG00000003954) #27
Microchiroptera	ANCESTRAL SPECIES	19	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000161933	ENSGT00940000162712 #11	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT01010000222336.a.a.a.pb ##34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998
Greater horseshoe bat	MODERN SPECIES	24	ENSRFEG00010004499	ENSRFEG00010004483	MED6 (ENSRFEG00010004461) #13	TTC9 (ENSRFEG00010004440) #14	MAP3K9 (ENSRFEG00010004405) #15	ENSRFEG00010004376	ENSRFEG00010004359	PCNX1 (ENSRFEG00010004288) #16	ENSRFEG00010004252	SIPA1L1 (ENSRFEG00010004221) #17	RGS6 (ENSRFEG00010003911) #18	DPF3 (ENSRFEG00010003693) #19	ENSRFEG00010003634 #20	ZFYVE1 (ENSRFEG00010003575) #21	ENSRFEG00010003540	RBM25 (ENSRFEG00010003517) #22	PSEN1 (ENSRFEG00010003436) #23	PAPLN (ENSRFEG00010003382) #26	NUMB (ENSRFEG00010003279) #27	RIOX1 (ENSRFEG00010003255)	HEATR4 (ENSRFEG00010003232) #28	ACOT4 (ENSRFEG00010003211) #32	ENSRFEG00010003184 #31	DNAL1 (ENSRFEG00010003125) #35	PNMA1 (ENSRFEG00010003104) #36	MIDEAS (ENSRFEG00010003038) #37	ENSRFEG00010002979	PTGR2 (ENSRFEG00010002957)	ENSRFEG00010002938	ZNF410 (ENSRFEG00010002841)	FAM161B (ENSRFEG00010002768)
Microbat	DUPLICATION
Microbat	MODERN SPECIES	1144											SIPA1L1 (ENSMLUG00000005530) #17	RGS6 (ENSMLUG00000009389) #18	DPF3 (ENSMLUG00000002257) #19	ENSMLUG00000000420 #20	ZFYVE1 (ENSMLUG00000000426) #21	ENSMLUG00000015434 #22	PSEN1 (ENSMLUG00000015451) #23	PAPLN (ENSMLUG00000022377) #26	NUMB (ENSMLUG00000015460) #27	HEATR4 (ENSMLUG00000016648) #28	RIOX1 (ENSMLUG00000025072)	ENSMLUG00000016666 #31	ENSMLUG00000026578	ACOT4 (ENSMLUG00000016671) #32	ACOT6 (ENSMLUG00000029850) #34	ENSMLUG00000029237 ##34	DNAL1 (ENSMLUG00000004830) #35	ENSMLUG00000004833 ##36	MIDEAS (ENSMLUG00000004835) #37	PTGR2 (ENSMLUG00000024299)	ZNF410 (ENSMLUG00000008658)
Microbat	MODERN SPECIES	1215															CCDC198 (ENSMLUG00000008135)	ENSMLUG00000024167 #22	SLC35F4 (ENSMLUG00000017062)	ARMH4 (ENSMLUG00000016834)	ENSMLUG00000015154	ACTR10 (ENSMLUG00000007553)	PSMA3 (ENSMLUG00000007590)	ARID4A (ENSMLUG00000012354)	TOMM20L (ENSMLUG00000012369)	KIAA0586 (ENSMLUG00000012379)	DACT1 (ENSMLUG00000007848)	DAAM1 (ENSMLUG00000006528)	L3HYPDH (ENSMLUG00000004403)	JKAMP (ENSMLUG00000004404)	CCDC175 (ENSMLUG00000004414)	ENSMLUG00000023998
Carnivora	ANCESTRAL SPECIES		ENSGT00830000128402	ENSGT00940000161933	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00910000147388	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000166770	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005.f #27	ENSGT00390000013207 #28	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT01010000222336.a.a.a.pb ##34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098
Felidae	ANCESTRAL SPECIES	1	ENSGT00830000128402	ENSGT00940000161933.r	ENSGT00940000161933.q	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005.f #27	ENSGT00390000013207 #28	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT01010000222336.a.a.a.pb ##34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998
Panthera	ANCESTRAL SPECIES	3	ENSGT00830000128402	ENSGT00940000161933.r	ENSGT00940000161933.q	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005.f #27	ENSGT01100000263504.a.b.a.b.a.b.ib	ENSGT00390000013207 #28	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT01010000222336.a.a.a.pb ##34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098
Tiger	MODERN SPECIES	490	SLC10A1 (ENSPTIG00000018577)	SMOC1 (ENSPTIG00000018558)	SLC8A3 (ENSPTIG00000018459)	COX16 (ENSPTIG00000018395)	SYNJ2BP (ENSPTIG00000018377)	ENSPTIG00000018363	ENSPTIG00000018360	MED6 (ENSPTIG00000018243) #13	MAP3K9 (ENSPTIG00000018191) #15	PCNX1 (ENSPTIG00000017962) #16	SIPA1L1 (ENSPTIG00000017821) #17	RGS6 (ENSPTIG00000017631) #18	DPF3 (ENSPTIG00000017482) #19	ENSPTIG00000017388 #20	ZFYVE1 (ENSPTIG00000017344) #21	RBM25 (ENSPTIG00000017309) #22	PSEN1 (ENSPTIG00000017262) #23	PAPLN (ENSPTIG00000017131) #26	NUMB (ENSPTIG00000017010) #27	ENSPTIG00000006627	HEATR4 (ENSPTIG00000016707) #28	ENSPTIG00000016688 #31	ENSPTIG00000016670 #34	DNAL1 (ENSPTIG00000016650) #35	PNMA1 (ENSPTIG00000006614) #36	MIDEAS (ENSPTIG00000016612) #37	PTGR2 (ENSPTIG00000016591)	ZNF410 (ENSPTIG00000016457)	FAM161B (ENSPTIG00000016429)	COQ6 (ENSPTIG00000016344)	ENTPD5 (ENSPTIG00000016301)
Panthera_a	ANCESTRAL SPECIES	7	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000161933.r	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005.f #27	ENSGT01100000263504.a.b.a.b.a.b.ib	ENSGT00390000013207 #28	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT01010000222336.a.a.a.pb ##34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098
leopard	MODERN SPECIES	109														ENSPPRG00000000080 #20	ZFYVE1 (ENSPPRG00000024613) #21	RBM25 (ENSPPRG00000017374) #22	PSEN1 (ENSPPRG00000009940) #23	PAPLN (ENSPPRG00000008382) #26	NUMB (ENSPPRG00000004643) #27	ENSPPRG00000020804	HEATR4 (ENSPPRG00000000114) #28	RIOX1 (ENSPPRG00000024007)	ENSPPRG00000024078 #31	ACOT4 (ENSPPRG00000024125) #32	ENSPPRG00000024290 #34	DNAL1 (ENSPPRG00000024432) #35	PNMA1 (ENSPPRG00000020738) #36	MIDEAS (ENSPPRG00000024652) #37	PTGR2 (ENSPPRG00000024906)	ZNF410 (ENSPPRG00000024973)	FAM161B (ENSPPRG00000025014)
lion	MODERN SPECIES	6	SYNJ2BP (ENSPLOG00000017089)	ENSPLOG00000017117	ENSPLOG00000017141	ADAM21 (ENSPLOG00000017153) #11	ADAM20 (ENSPLOG00000017171) #12	MED6 (ENSPLOG00000017203) #13	TTC9 (ENSPLOG00000017301) #14	MAP3K9 (ENSPLOG00000017344) #15	PCNX1 (ENSPLOG00000017454) #16	SIPA1L1 (ENSPLOG00000017972) #17	ENSPLOG00000018078	RGS6 (ENSPLOG00000018169) #18	DPF3 (ENSPLOG00000018551) #19	ENSPLOG00000018852 #20	ZFYVE1 (ENSPLOG00000018965) #21	RBM25 (ENSPLOG00000019022) #22	PSEN1 (ENSPLOG00000019082) #23	PAPLN (ENSPLOG00000000483) #26	ENSPLOG00000000547 #27	ENSPLOG00000000607	ENSPLOG00000000621 #28	RIOX1 (ENSPLOG00000000634)	ENSPLOG00000000646 #31	ACOT4 (ENSPLOG00000000671) #32	ACOT6 (ENSPLOG00000000692) #34	ENSPLOG00000000753 ##34	DNAL1 (ENSPLOG00000000836) #35	PNMA1 (ENSPLOG00000000861) #36	MIDEAS (ENSPLOG00000000882) #37	PTGR2 (ENSPLOG00000000929)	ZNF410 (ENSPLOG00000001034)
Cat	MODERN SPECIES	237	SYNJ2BP (ENSFCAG00000042738)	ENSFCAG00000035982	ENSFCAG00000024835	ADAM20 (ENSFCAG00000043793) #12	MED6 (ENSFCAG00000013091) #13	TTC9 (ENSFCAG00000042378) #14	MAP3K9 (ENSFCAG00000037711) #15	PCNX1 (ENSFCAG00000004193) #16	SIPA1L1 (ENSFCAG00000007022) #17	RGS6 (ENSFCAG00000014028) #18	ENSFCAG00000028177	DPF3 (ENSFCAG00000014694) #19	ENSFCAG00000051527	ENSFCAG00000014698 #20	ZFYVE1 (ENSFCAG00000014703) #21	RBM25 (ENSFCAG00000011716) #22	PSEN1 (ENSFCAG00000028093) #23	PAPLN (ENSFCAG00000011718) #26	NUMB (ENSFCAG00000026244) #27	HEATR4 (ENSFCAG00000008136) #28	RIOX1 (ENSFCAG00000042968)	ENSFCAG00000037046 ##34	ENSFCAG00000034073 #34	DNAL1 (ENSFCAG00000031313) #35	PNMA1 (ENSFCAG00000012218) #36	MIDEAS (ENSFCAG00000012220) #37	PTGR2 (ENSFCAG00000024703)	ZNF410 (ENSFCAG00000030643)	FAM161B (ENSFCAG00000012227)	COQ6 (ENSFCAG00000021892)	BBOF1 (ENSFCAG00000006200)
Caniformia	ANCESTRAL SPECIES	15	ENSGT00830000128402	ENSGT00940000161933	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00910000147388	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000166770	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005.f #27	ENSGT00390000013207 #28	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT01010000222336.a.a.a.pb ##34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098
Caniformia_b	ANCESTRAL SPECIES	14	ENSGT00940000162712 #11	ENSGT00940000161933	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000167417.a	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00910000147388	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000166770	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005.f #27	ENSGT00390000013207 #28	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01050000245403.b	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT01010000222336.a.a.a.pb ##34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793
Mustelinae	ANCESTRAL SPECIES	37	ENSGT00940000154206.a	ENSGT00390000018470	ENSGT00940000161933	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000167417.a	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005.f #27	ENSGT00390000013207 #28	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01050000245403.b
American mink	DUPLICATION
American mink	MODERN SPECIES	49	GOLGA5 (ENSNVIG00000006706)	ADAM21 (ENSNVIG00000006741) #11	ADAM20 (ENSNVIG00000006748) #12	MED6 (ENSNVIG00000006782) #13	ENSNVIG00000006827	TTC9 (ENSNVIG00000006834) #14	ENSNVIG00000006848	MAP3K9 (ENSNVIG00000006878) #15	PCNX1 (ENSNVIG00000007015) #16	SIPA1L1 (ENSNVIG00000007202) #17	Q7Z4K5 (ENSNVIG00000007391) #18	DPF3 (ENSNVIG00000007620) #19	ENSNVIG00000007698 #20	ZFYVE1 (ENSNVIG00000007758) #21	ENSNVIG00000007788 #22	ENSNVIG00000007836 #22	ENSNVIG00000007839	PSEN1 (ENSNVIG00000007845) #23	PAPLN (ENSNVIG00000007922) #26	NUMB (ENSNVIG00000008276) #27	ENSNVIG00000008597 #28	RIOX1 (ENSNVIG00000008635)	ENSNVIG00000008648 #31	ACOT4 (ENSNVIG00000008658) #32	ENSNVIG00000008674
American mink	MODERN SPECIES	49	CHGA (ENSNVIG00000006636)	GOLGA5 (ENSNVIG00000006706)	ADAM21 (ENSNVIG00000006741) #11	ADAM20 (ENSNVIG00000006748) #12	MED6 (ENSNVIG00000006782) #13	ENSNVIG00000006827	TTC9 (ENSNVIG00000006834) #14	ENSNVIG00000006848	MAP3K9 (ENSNVIG00000006878) #15	PCNX1 (ENSNVIG00000007015) #16	SIPA1L1 (ENSNVIG00000007202) #17	Q7Z4K5 (ENSNVIG00000007391) #18	DPF3 (ENSNVIG00000007620) #19	ENSNVIG00000007698 #20	ZFYVE1 (ENSNVIG00000007758) #21	ENSNVIG00000007788 #22	ENSNVIG00000007836 #22	ENSNVIG00000007839	PSEN1 (ENSNVIG00000007845) #23	PAPLN (ENSNVIG00000007922) #26	NUMB (ENSNVIG00000008276) #27	ENSNVIG00000008597 #28	RIOX1 (ENSNVIG00000008635)	ENSNVIG00000008648 #31	ACOT4 (ENSNVIG00000008658) #32	ENSNVIG00000008674
Ferret	MODERN SPECIES	208	MOAP1 (ENSMPUG00000019180) ##36	ITPK1 (ENSMPUG00000003565)	CHGA (ENSMPUG00000003576)	GOLGA5 (ENSMPUG00000003583)	ENSMPUG00000003597	ADAM21 (ENSMPUG00000019183) #11	ADAM20 (ENSMPUG00000019187) #12	MED6 (ENSMPUG00000003601) #13	MAP3K9 (ENSMPUG00000003616) #15	PCNX1 (ENSMPUG00000003628) #16	SIPA1L1 (ENSMPUG00000003651) #17	RGS6 (ENSMPUG00000003663) #18	DPF3 (ENSMPUG00000003677) #19	ENSMPUG00000003683 #20	ZFYVE1 (ENSMPUG00000003690) #21	RBM25 (ENSMPUG00000003698) #22	PSEN1 (ENSMPUG00000003705) #23	PAPLN (ENSMPUG00000003711) #26	NUMB (ENSMPUG00000003799) #27	HEATR4 (ENSMPUG00000003814) #28	RIOX1 (ENSMPUG00000003832)	ENSMPUG00000003838 #31	ENSMPUG00000003883 #32
Ursidae	ANCESTRAL SPECIES	10	ENSGT00940000161933	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000167417.a	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00910000147388	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000166770	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005.f #27	ENSGT00390000013207 #28	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT01010000222336.a.a.a.pb ##34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098
Giant Panda	MODERN SPECIES	5	SMOC1 (ENSAMEG00000014603)	SLC8A3 (ENSAMEG00000014627)	COX16 (ENSAMEG00000024342)	SYNJ2BP (ENSAMEG00000030612)	ENSAMEG00000019588 #11	ADAM20 (ENSAMEG00000019828) #12	ENSAMEG00000007962 #13	ENSAMEG00000025396 #14	ENSAMEG00000008001	MAP3K9 (ENSAMEG00000008002) #15	PCNX1 (ENSAMEG00000008031) #16	SIPA1L1 (ENSAMEG00000006090) #17	RGS6 (ENSAMEG00000016168) #18	DPF3 (ENSAMEG00000016206) #19	ZFYVE1 (ENSAMEG00000016254) #21	RBM25 (ENSAMEG00000016270) #22	PSEN1 (ENSAMEG00000018205) #23	PAPLN (ENSAMEG00000018209) #26	NUMB (ENSAMEG00000018215) #27	HEATR4 (ENSAMEG00000018217) #28	RIOX1 (ENSAMEG00000018220)	ENSAMEG00000018221 #31	ACOT4 (ENSAMEG00000027361) #32	ACOT6 (ENSAMEG00000018224) #34	ENSAMEG00000025452 ##34	DNAL1 (ENSAMEG00000018225) #35	PNMA1 (ENSAMEG00000019053) #36	MIDEAS (ENSAMEG00000018230) #37	PTGR2 (ENSAMEG00000018232)	ZNF410 (ENSAMEG00000029608)	FAM161B (ENSAMEG00000018241)
Ursus	ANCESTRAL SPECIES	11	ENSGT00940000162712 #11	ENSGT00940000161933.l	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000167417.a	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00910000147388	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000166770	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005.f #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT01010000222336.a.a.a.pb ##34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098
American black bear	MODERN SPECIES	3921																RBM25 (ENSUAMG00000007707) #22	PSEN1 (ENSUAMG00000007708) #23
Polar bear	MODERN SPECIES	100	SYNJ2BP (ENSUMAG00000009694)	ENSUMAG00000009690	ADAM21 (ENSUMAG00000009684) #11	ENSUMAG00000009677	ENSUMAG00000009672 #12	MED6 (ENSUMAG00000009663) #13	ENSUMAG00000009643	MAP3K9 (ENSUMAG00000009583) #15	PCNX1 (ENSUMAG00000009362) #16	SIPA1L1 (ENSUMAG00000009307) #17	ENSUMAG00000009300	RGS6 (ENSUMAG00000009102) #18	DPF3 (ENSUMAG00000009079) #19	ENSUMAG00000009064 #20	ZFYVE1 (ENSUMAG00000009060) #21	ENSUMAG00000009058 #22	ENSUMAG00000009056	PSEN1 (ENSUMAG00000009050) #23	ENSUMAG00000009037 #26	NUMB (ENSUMAG00000009031) #27	ENSUMAG00000009019 #28	ENSUMAG00000009015 #31	ENSUMAG00000009007 #32	ACOT6 (ENSUMAG00000009002) #34	ENSUMAG00000008999 ##34	DNAL1 (ENSUMAG00000008993) #35	PNMA1 (ENSUMAG00000008991) #36	MIDEAS (ENSUMAG00000008947) #37	PTGR2 (ENSUMAG00000008918)	ZNF410 (ENSUMAG00000008911)	FAM161B (ENSUMAG00000008908)
Canidae	ANCESTRAL SPECIES	4	ENSGT00940000161933.p	ENSGT00950000183087.B	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00910000147388	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005.f #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998	ENSGT00390000015152
Red fox	MODERN SPECIES	71	ENSVVUG00000003905	ADAM21 (ENSVVUG00000003910) #11	ADAM20 (ENSVVUG00000003912) #12	MED6 (ENSVVUG00000003917) #13	ENSVVUG00000003922	TTC9 (ENSVVUG00000003929) #14	MAP3K9 (ENSVVUG00000003949) #15	PCNX1 (ENSVVUG00000004185) #16	ENSVVUG00000004258	SIPA1L1 (ENSVVUG00000004277) #17	ENSVVUG00000004367	RGS6 (ENSVVUG00000004371) #18	DPF3 (ENSVVUG00000004399) #19	DCAF4 (ENSVVUG00000004408) #20	ZFYVE1 (ENSVVUG00000004419) #21	RBM25 (ENSVVUG00000004426) #22	PSEN1 (ENSVVUG00000004448) #23	ENSVVUG00000004671	PAPLN (ENSVVUG00000004677) #26	NUMB (ENSVVUG00000004724) #27	ENSVVUG00000004767	HEATR4 (ENSVVUG00000004796) #28	RIOX1 (ENSVVUG00000004822)	ACOT4 (ENSVVUG00000004826) #32	ACOT6 (ENSVVUG00000004848) #34	ENSVVUG00000004860	PNMA1 (ENSVVUG00000004868) #36	MIDEAS (ENSVVUG00000004878) #37	PTGR2 (ENSVVUG00000004897)	ZNF410 (ENSVVUG00000004918)	FAM161B (ENSVVUG00000004966)
Canis_lupus	ANCESTRAL SPECIES	8	ENSGT00940000161933.p.a	ENSGT00940000161933.o	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00910000147388	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005.f #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998	ENSGT00390000015152
Dog	MODERN SPECIES	36	ENSCAFG00845007452	ENSCAFG00845007501	ADAM21 (ENSCAFG00845007532) #11	ENSCAFG00845007590 #12	MED6 (ENSCAFG00845007660) #13	TTC9 (ENSCAFG00845007746) #14	MAP3K9 (ENSCAFG00845007871) #15	PCNX1 (ENSCAFG00845008369) #16	SIPA1L1 (ENSCAFG00845009192) #17	ENSCAFG00845009650	RGS6 (ENSCAFG00845010233) #18	ENSCAFG00845011536	DPF3 (ENSCAFG00845011584) #19	DCAF4 (ENSCAFG00845011739) #20	ZFYVE1 (ENSCAFG00845011945) #21	RBM25 (ENSCAFG00845012038) #22	PSEN1 (ENSCAFG00845012166) #23	ENSCAFG00845012353	PAPLN (ENSCAFG00845012413) #26	NUMB (ENSCAFG00845012636) #27	ENSCAFG00845012842	ENSCAFG00845012882	HEATR4 (ENSCAFG00845012914) #28	RIOX1 (ENSCAFG00845012971)	ACOT6 (ENSCAFG00845013022) #34	DNAL1 (ENSCAFG00845013115) #35	PNMA1 (ENSCAFG00845013185) #36	ELMSAN1 (ENSCAFG00845013233) #37	PTGR2 (ENSCAFG00845013371)	ENSCAFG00845013463	ZNF410 (ENSCAFG00845013533)
Dingo	MODERN SPECIES	161	ENSCAFG00020005547	ADAM21 (ENSCAFG00020005542) #11	ENSCAFG00020005534 #12	MED6 (ENSCAFG00020005527) #13	TTC9 (ENSCAFG00020005523) #14	MAP3K9 (ENSCAFG00020005432) #15	PCNX1 (ENSCAFG00020005261) #16	ENSCAFG00020005203	SIPA1L1 (ENSCAFG00020004730) #17	ENSCAFG00020004638	RGS6 (ENSCAFG00020004610) #18	DPF3 (ENSCAFG00020004577) #19	ENSCAFG00020004563	ENSCAFG00020004555 #20	ZFYVE1 (ENSCAFG00020004549) #21	ENSCAFG00020004548 #22	ENSCAFG00020004545	ENSCAFG00020004536	PSEN1 (ENSCAFG00020004532) #23	PAPLN (ENSCAFG00020004479) #26	NUMB (ENSCAFG00020004468) #27	RIOX1 (ENSCAFG00020004426)	ENSCAFG00020004414 #28	ENSCAFG00020004409 #31	ACOT4 (ENSCAFG00020004399) #32	ACOT6 (ENSCAFG00020004396) #34	ENSCAFG00020004395	DNAL1 (ENSCAFG00020004388) #35	PNMA1 (ENSCAFG00020004385) #36	MIDEAS (ENSCAFG00020004292) #37	PTGR2 (ENSCAFG00020004198)
Artiodactyla	ANCESTRAL SPECIES	3	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000161933	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01050000245403.b	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998
Suina	ANCESTRAL SPECIES	24	ENSGT00940000157547	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000161933	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000013207 #28	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998	ENSGT00390000015152
Pig	MODERN SPECIES	15	ENSSSCG00000054461	ENSSSCG00000058417	ADAM21 (ENSSSCG00000002322) #11	ADAM20 (ENSSSCG00000034126) #12	ENSSSCG00000042127	MED6 (ENSSSCG00000034290) #13	ENSSSCG00000053210	TTC9 (ENSSSCG00000020701) #14	MAP3K9 (ENSSSCG00000002329) #15	PCNX1 (ENSSSCG00000002330) #16	SIPA1L1 (ENSSSCG00000002332) #17	RGS6 (ENSSSCG00000033093) #18	DPF3 (ENSSSCG00000002333) #19	ENSSSCG00000028159 #20	ZFYVE1 (ENSSSCG00000002337) #21	RBM25 (ENSSSCG00000028663) #22	PSEN1 (ENSSSCG00000002340) #23	PAPLN (ENSSSCG00000002341) #26	NUMB (ENSSSCG00000022178) #27	ENSSSCG00000021676 #28	RIOX1 (ENSSSCG00000002344)	ENSSSCG00000062678 #31	ENSSSCG00000056471 #32	ENSSSCG00000002349 #32	ACOT6 (ENSSSCG00000002348) #34	DNAL1 (ENSSSCG00000039469) #35	PNMA1 (ENSSSCG00000062320) #36	MIDEAS (ENSSSCG00000002350) #37	PTGR2 (ENSSSCG00000002351)	ZNF410 (ENSSSCG00000002352)	FAM161B (ENSSSCG00000002353)
Chacoan peccary	MODERN SPECIES	885	SMOC1 (ENSCWAG00000012028)	SLC8A3 (ENSCWAG00000012284)	COX16 (ENSCWAG00000012788)	SYNJ2BP (ENSCWAG00000012833)	ENSCWAG00000012863 #11	ADAM20 (ENSCWAG00000012898) #12	MED6 (ENSCWAG00000012933) #13	TTC9 (ENSCWAG00000013020) #14	MAP3K9 (ENSCWAG00000013069) #15	PCNX1 (ENSCWAG00000013395) #16	SIPA1L1 (ENSCWAG00000014078) #17	RGS6 (ENSCWAG00000014412) #18	DPF3 (ENSCWAG00000019522) #19	ENSCWAG00000019651 #20	ZFYVE1 (ENSCWAG00000019785) #21	RBM25 (ENSCWAG00000019846) #22	PSEN1 (ENSCWAG00000019883) #23	ENSCWAG00000019962 #26	NUMB (ENSCWAG00000020014) #27	HEATR4 (ENSCWAG00000020096) #28	RIOX1 (ENSCWAG00000020138)	ENSCWAG00000020157 #31	ENSCWAG00000020187 #32	ENSCWAG00000020201 #32	ENSCWAG00000020210 #34	DNAL1 (ENSCWAG00000020227) #35	PNMA1 (ENSCWAG00000020295) #36	MIDEAS (ENSCWAG00000020304) #37	PTGR2 (ENSCWAG00000020361)	ZNF410 (ENSCWAG00000020396)	FAM161B (ENSCWAG00000020474)
Artiodactyla_a	ANCESTRAL SPECIES	2	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000161933	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01050000245403.b	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998
Camelidae	ANCESTRAL SPECIES	8	ENSGT00520000055955	ENSGT00940000161933	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00830000128402	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998	ENSGT00390000015152
Alpaca	MODERN SPECIES	2817													ENSVPAG00000009046 #19	ENSVPAG00000009047 #20	ZFYVE1 (ENSVPAG00000009050) #21	RBM25 (ENSVPAG00000009052) #22	PSEN1 (ENSVPAG00000009058) #23
Arabian camel	MODERN SPECIES	32	SYNJ2BP (ENSCDRG00005004085)	ENSCDRG00005004104	ENSCDRG00005004120	ADAM21 (ENSCDRG00005004155) #11	ADAM20 (ENSCDRG00005004170) #12	MED6 (ENSCDRG00005004215) #13	TTC9 (ENSCDRG00005004509) #14	MAP3K9 (ENSCDRG00005004539) #15	PCNX1 (ENSCDRG00005004677) #16	SIPA1L1 (ENSCDRG00005005026) #17	RGS6 (ENSCDRG00005005336) #18	ENSCDRG00005005948	DPF3 (ENSCDRG00005005965) #19	ENSCDRG00005006011 #20	ZFYVE1 (ENSCDRG00005006074) #21	RBM25 (ENSCDRG00005006176) #22	PSEN1 (ENSCDRG00005006235) #23	PAPLN (ENSCDRG00005006429) #26	NUMB (ENSCDRG00005006647) #27	HEATR4 (ENSCDRG00005007067) #28	RIOX1 (ENSCDRG00005007193)	ENSCDRG00005007214 #31	DNAL1 (ENSCDRG00005007353) #35	PNMA1 (ENSCDRG00005007500) #36	MIDEAS (ENSCDRG00005007531) #37	PTGR2 (ENSCDRG00005007915)	ZNF410 (ENSCDRG00005008036)	FAM161B (ENSCDRG00005008454)	COQ6 (ENSCDRG00005008512)	ENTPD5 (ENSCDRG00005008760)	BBOF1 (ENSCDRG00005008989)
Artiodactyla_b	ANCESTRAL SPECIES	2	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000161933	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01050000245403.b	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998
Cetacea	ANCESTRAL SPECIES	2	ENSGT00940000161933.d	ENSGT00830000128402	ENSGT00940000161933.c	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000013207 #28	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998	ENSGT00390000015152
Blue whale	MODERN SPECIES	11	ENSBMSG00010003075	SYNJ2BP (ENSBMSG00010003084)	ENSBMSG00010003098	ADAM21 (ENSBMSG00010003105) #11	ADAM20 (ENSBMSG00010003126) #12	MED6 (ENSBMSG00010003186) #13	TTC9 (ENSBMSG00010003206) #14	MAP3K9 (ENSBMSG00010003254) #15	PCNX1 (ENSBMSG00010003364) #16	SIPA1L1 (ENSBMSG00010003551) #17	RGS6 (ENSBMSG00010004117) #18	ENSBMSG00010005707	DPF3 (ENSBMSG00010005752) #19	ENSBMSG00010005834 #20	ZFYVE1 (ENSBMSG00010005866) #21	RBM25 (ENSBMSG00010005882) #22	ENSBMSG00010005918	PSEN1 (ENSBMSG00010005948) #23	ENSBMSG00010005988	PAPLN (ENSBMSG00010006012) #26	NUMB (ENSBMSG00010006080) #27	ENSBMSG00010006163 #28	RIOX1 (ENSBMSG00010006198)	ENSBMSG00010006212 #31	ACOT4 (ENSBMSG00010006272) #32	ACOT6 (ENSBMSG00010006298) #34	DNAL1 (ENSBMSG00010006338) #35	PNMA1 (ENSBMSG00010006363) #36	MIDEAS (ENSBMSG00010006405) #37	ENSBMSG00010006484	PTGR2 (ENSBMSG00010006503)
Odontoceti	ANCESTRAL SPECIES	2	ENSGT00940000157547	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000161933.c	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000013207 #28	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998	ENSGT00390000015152
Sperm whale	MODERN SPECIES	2	SLC10A1 (ENSPCTG00005017091)	SMOC1 (ENSPCTG00005017147)	COX16 (ENSPCTG00005017348)	ENSPCTG00005017395	ENSPCTG00005002366	MED6 (ENSPCTG00005002684) #13	ADAM21 (ENSPCTG00005003014) #11	TTC9 (ENSPCTG00005003137) #14	MAP3K9 (ENSPCTG00005003302) #15	PCNX1 (ENSPCTG00005003741) #16	SIPA1L1 (ENSPCTG00005005182) #17	RGS6 (ENSPCTG00005008714) #18	DPF3 (ENSPCTG00005014656) #19	ENSPCTG00005015279 #20	ZFYVE1 (ENSPCTG00005015653) #21	RBM25 (ENSPCTG00005015944) #22	PSEN1 (ENSPCTG00005016305) #23	PAPLN (ENSPCTG00005017592) #26	NUMB (ENSPCTG00005019456) #27	ENSPCTG00005020210 #28	RIOX1 (ENSPCTG00005020418)	ENSPCTG00005020502 #31	ACOT4 (ENSPCTG00005020651) #32	ACOT6 (ENSPCTG00005020732) #34	DNAL1 (ENSPCTG00005020845) #35	PNMA1 (ENSPCTG00005021041) #36	ELMSAN1 (ENSPCTG00005021121) #37	PTGR2 (ENSPCTG00005021277)	ZNF410 (ENSPCTG00005021580)	FAM161B (ENSPCTG00005021920)	COQ6 (ENSPCTG00005022055)
Odontoceti_a	DUPLICATION
Odontoceti_a	DUPLICATION
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT00940000157547	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000161933.c	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019.w.a #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000013207 #28	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998	ENSGT00390000015152
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT00940000157547	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000161933.c	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019.w.a #22	ENSGT00390000011748.f.a.a.b	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000013207 #28	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998
Monodontidae	ANCESTRAL SPECIES	5	ENSGT00940000157547	ENSGT00940000154345.a.j	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019.w.a #22	ENSGT00390000011748.f.a.a.b	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000013207 #28	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998
Narwhal	MODERN SPECIES	308	SLC8A3 (ENSMMNG00015014397)	ENSMMNG00015014421	COX16 (ENSMMNG00015014434)	SYNJ2BP (ENSMMNG00015014445)	ADAM20 (ENSMMNG00015014460) #12	MED6 (ENSMMNG00015014492) #13	TTC9 (ENSMMNG00015014506) #14	MAP3K9 (ENSMMNG00015014530) #15	PCNX1 (ENSMMNG00015014580) #16	SIPA1L1 (ENSMMNG00015014715) #17	RGS6 (ENSMMNG00015014949) #18	ENSMMNG00015015067	DPF3 (ENSMMNG00015015087) #19	ENSMMNG00015015140 #20	ZFYVE1 (ENSMMNG00015015194) #21	ENSMMNG00015015230 #22	ENSMMNG00015015284	PSEN1 (ENSMMNG00015015312) #23	PAPLN (ENSMMNG00015015359) #26	NUMB (ENSMMNG00015015419) #27	ENSMMNG00015015468 #28	RIOX1 (ENSMMNG00015015480)	ENSMMNG00015015493 #31	ACOT4 (ENSMMNG00015015501) #32	ENSMMNG00015015508 #34	DNAL1 (ENSMMNG00015015521) #35	PNMA1 (ENSMMNG00015015536) #36	MIDEAS (ENSMMNG00015015547) #37	PTGR2 (ENSMMNG00015015571)	ZNF410 (ENSMMNG00015015646)	FAM161B (ENSMMNG00015015710)
Vaquita	MODERN SPECIES	11	ENSPSNG00000009489	COX16 (ENSPSNG00000009527)	SYNJ2BP (ENSPSNG00000009565)	ENSPSNG00000009597	ADAM20 (ENSPSNG00000009613) #12	MED6 (ENSPSNG00000009675) #13	TTC9 (ENSPSNG00000009761) #14	MAP3K9 (ENSPSNG00000009831) #15	PCNX1 (ENSPSNG00000010019) #16	SIPA1L1 (ENSPSNG00000010540) #17	RGS6 (ENSPSNG00000011020) #18	ENSPSNG00000012992	DPF3 (ENSPSNG00000013076) #19	ENSPSNG00000013330 #20	ZFYVE1 (ENSPSNG00000013598) #21	RBM25 (ENSPSNG00000013760) #22	ENSPSNG00000013848	PSEN1 (ENSPSNG00000013932) #23	PAPLN (ENSPSNG00000014220) #26	NUMB (ENSPSNG00000015416) #27	ENSPSNG00000015683 #28	RIOX1 (ENSPSNG00000015840)	ENSPSNG00000015880 #31	ACOT4 (ENSPSNG00000015972) #32	ENSPSNG00000016028 #34	DNAL1 (ENSPSNG00000016080) #35	PNMA1 (ENSPSNG00000016212) #36	MIDEAS (ENSPSNG00000016252) #37	ENSPSNG00000016323	ENSPSNG00000016386	ZNF410 (ENSPSNG00000016492)
Dolphin	MODERN SPECIES	31																RBM25 (ENSTTRG00000009279) #22	PSEN1 (ENSTTRG00000009292) #23	PAPLN (ENSTTRG00000009297) #26	NUMB (ENSTTRG00000009302) #27
Odontoceti_a	ANCESTRAL SPECIES																	ENSGT00730000111019.w.b #22
Odontoceti_b	ANCESTRAL SPECIES																	ENSGT00730000111019.w.b #22
Monodontidae	ANCESTRAL SPECIES	6	ENSGT00390000003443	ENSGT00940000153377.C	ENSGT00940000160124	ENSGT00390000004933	ENSGT00390000015899	ENSGT00940000171088	ENSGT00390000006367.c	ENSGT00530000063113.A	ENSGT00940000163017	ENSGT00940000158027	ENSGT00940000158848	ENSGT00940000153438.b	ENSGT00390000006485.c	ENSGT00940000153678.a.a	ENSGT00730000111019.x.a #22	ENSGT00730000111019.w.b #22	ENSGT00940000162982	ENSGT00730000111305	ENSGT00940000167085.b.b	ENSGT00390000018491	ENSGT00940000154471.a.b.a.b	ENSGT00940000155765	ENSGT00940000155504	ENSGT00390000013709.b	ENSGT00940000158677	ENSGT00940000158899	ENSGT00390000012906	ENSGT00940000159679	ENSGT00390000013287.s.c	ENSGT00940000155323.a	ENSGT00950000182955.a.b.b
Narwhal	MODERN SPECIES	313	PPFIBP1 (ENSMMNG00015017936)	MRPS35 (ENSMMNG00015018219)	MANSC4 (ENSMMNG00015018247)	KLHL42 (ENSMMNG00015018263)	PTHLH (ENSMMNG00015018274)	CCDC91 (ENSMMNG00015018340)	ENSMMNG00015018436	ENSMMNG00015018454	FAR2 (ENSMMNG00015018470)	ERGIC2 (ENSMMNG00015018496)	TMTC1 (ENSMMNG00015018620)	IPO8 (ENSMMNG00015018761)	CAPRIN2 (ENSMMNG00015018904)	SINHCAF (ENSMMNG00015019073)	DENND5B (ENSMMNG00015019106)	ENSMMNG00015019167 #22	ETFBKMT (ENSMMNG00015019199)	AMN1 (ENSMMNG00015019221)	ENSMMNG00015019245	RESF1 (ENSMMNG00015019295)	BICD1 (ENSMMNG00015019343)	ENSMMNG00015019390	FGD4 (ENSMMNG00015015901)	ENSMMNG00015016115	ENSMMNG00015016149	DNM1L (ENSMMNG00015016298)	YARS2 (ENSMMNG00015016608)	PKP2 (ENSMMNG00015016629)	SYT10 (ENSMMNG00015016656)	ENSMMNG00015016710	CPNE8 (ENSMMNG00015016830)
Beluga whale	MODERN SPECIES	23	MANSC4 (ENSDLEG00000013624)	KLHL42 (ENSDLEG00000013634)	PTHLH (ENSDLEG00000013653)	CCDC91 (ENSDLEG00000013680)	ENSDLEG00000013765	IFIT1 (ENSDLEG00000013792)	FAR2 (ENSDLEG00000013825)	ERGIC2 (ENSDLEG00000013853)	ENSDLEG00000013900	TMTC1 (ENSDLEG00000013999)	IPO8 (ENSDLEG00000014187)	CAPRIN2 (ENSDLEG00000014237)	SINHCAF (ENSDLEG00000014366)	DENND5B (ENSDLEG00000014404)	ENSDLEG00000014531 #22	ENSDLEG00000014545 #22	ETFBKMT (ENSDLEG00000014562)	AMN1 (ENSDLEG00000014584)	ENSDLEG00000014639	KIAA1551 (ENSDLEG00000014657)	BICD1 (ENSDLEG00000014676)	ENSDLEG00000014706	FGD4 (ENSDLEG00000014728)	ENSDLEG00000014807	DNM1L (ENSDLEG00000014843)	YARS2 (ENSDLEG00000015067)	PKP2 (ENSDLEG00000015080)	SYT10 (ENSDLEG00000015137)	ALG10 (ENSDLEG00000015144)	CPNE8 (ENSDLEG00000015155)
Odontoceti_a	ANCESTRAL SPECIES	89																ENSGT00730000111019.x #22	ENSGT00990000210315
Odontoceti_b	DUPLICATION
Odontoceti_b	ANCESTRAL SPECIES	7	ENSGT00390000005178	ENSGT00390000003443	ENSGT00940000153377.C	ENSGT00940000160124	ENSGT00390000004933	ENSGT00390000015899	ENSGT00940000171088	ENSGT00390000006367.c	ENSGT00530000063113.A	ENSGT00940000163017	ENSGT00940000158027	ENSGT00940000158848	ENSGT00940000153438.b	ENSGT00390000006485.c	ENSGT00940000153678.a.a	ENSGT00730000111019.x.a #22	ENSGT00940000162982	ENSGT00730000111305	ENSGT00390000018491	ENSGT00940000154471.a.b.a.b	ENSGT00940000155765	ENSGT00940000155504	ENSGT00390000013709.b	ENSGT00940000158677	ENSGT00940000158899	ENSGT00390000012906	ENSGT00940000159679	ENSGT00390000013287.s.c	ENSGT00940000155323.a	ENSGT00950000182955.a.b.b	ENSGT00390000002848
Monodontidae	ANCESTRAL SPECIES	6	ENSGT00390000005178	ENSGT00390000003443	ENSGT00940000153377.C	ENSGT00940000160124	ENSGT00390000004933	ENSGT00390000015899	ENSGT00940000171088	ENSGT00390000006367.c	ENSGT00530000063113.A	ENSGT00940000163017	ENSGT00940000158027	ENSGT00940000158848	ENSGT00940000153438.b	ENSGT00390000006485.c	ENSGT00940000153678.a.a	ENSGT00730000111019.x.a #22	ENSGT00730000111019.w.b #22	ENSGT00940000162982	ENSGT00730000111305	ENSGT00940000167085.b.b	ENSGT00390000018491	ENSGT00940000154471.a.b.a.b	ENSGT00940000155765	ENSGT00940000155504	ENSGT00390000013709.b	ENSGT00940000158677	ENSGT00940000158899	ENSGT00390000012906	ENSGT00940000159679	ENSGT00390000013287.s.c	ENSGT00940000155323.a
Beluga whale	MODERN SPECIES	23	MRPS35 (ENSDLEG00000013439)	MANSC4 (ENSDLEG00000013624)	KLHL42 (ENSDLEG00000013634)	PTHLH (ENSDLEG00000013653)	CCDC91 (ENSDLEG00000013680)	ENSDLEG00000013765	IFIT1 (ENSDLEG00000013792)	FAR2 (ENSDLEG00000013825)	ERGIC2 (ENSDLEG00000013853)	ENSDLEG00000013900	TMTC1 (ENSDLEG00000013999)	IPO8 (ENSDLEG00000014187)	CAPRIN2 (ENSDLEG00000014237)	SINHCAF (ENSDLEG00000014366)	DENND5B (ENSDLEG00000014404)	ENSDLEG00000014531 #22	ENSDLEG00000014545 #22	ETFBKMT (ENSDLEG00000014562)	AMN1 (ENSDLEG00000014584)	ENSDLEG00000014639	KIAA1551 (ENSDLEG00000014657)	BICD1 (ENSDLEG00000014676)	ENSDLEG00000014706	FGD4 (ENSDLEG00000014728)	ENSDLEG00000014807	DNM1L (ENSDLEG00000014843)	YARS2 (ENSDLEG00000015067)	PKP2 (ENSDLEG00000015080)	SYT10 (ENSDLEG00000015137)	ALG10 (ENSDLEG00000015144)	CPNE8 (ENSDLEG00000015155)
Vaquita	MODERN SPECIES	1	ENSPSNG00000006722	ENSPSNG00000006681	MRPS35 (ENSPSNG00000006622)	MANSC4 (ENSPSNG00000006601)	KLHL42 (ENSPSNG00000006576)	PTHLH (ENSPSNG00000006548)	CCDC91 (ENSPSNG00000006379)	ENSPSNG00000006325	FAR2 (ENSPSNG00000006264)	ERGIC2 (ENSPSNG00000006209)	TMTC1 (ENSPSNG00000005916)	ENSPSNG00000005785	IPO8 (ENSPSNG00000005579)	CAPRIN2 (ENSPSNG00000005431)	SINHCAF (ENSPSNG00000005372)	ENSPSNG00000005350 #22	DENND5B (ENSPSNG00000005104)	ENSPSNG00000005039	ENSPSNG00000005020	AMN1 (ENSPSNG00000005000)	RESF1 (ENSPSNG00000004959)	BICD1 (ENSPSNG00000004903)	ENSPSNG00000004862	ENSPSNG00000004851	FGD4 (ENSPSNG00000004764)	ENSPSNG00000004600	DNM1L (ENSPSNG00000004469)	YARS2 (ENSPSNG00000004339)	ENSPSNG00000004323	PKP2 (ENSPSNG00000004294)	SYT10 (ENSPSNG00000004264)
Odontoceti_b	ANCESTRAL SPECIES	63																ENSGT00730000111019.x.b #22	ENSGT00990000210315
Monodontidae	ANCESTRAL SPECIES	70																ENSGT00730000111019.x.b #22	ENSGT00990000210315
Beluga whale	MODERN SPECIES	24																ENSDLEG00000004911 #22	ENSDLEG00000004905	ENSDLEG00000004900	PSEN1 (ENSDLEG00000004888) #23	PAPLN (ENSDLEG00000004848) #26	NUMB (ENSDLEG00000004818) #27	RIOX1 (ENSDLEG00000004808)	ENSDLEG00000004797 #28	ENSDLEG00000004791 #31	ACOT6 (ENSDLEG00000004777) #34	DNAL1 (ENSDLEG00000004767) #35	PNMA1 (ENSDLEG00000004762) #36	ELMSAN1 (ENSDLEG00000004742) #37	PTGR2 (ENSDLEG00000004727)	ENSDLEG00000004722	FAM161B (ENSDLEG00000004716)
Pecora	ANCESTRAL SPECIES	6	ENSGT00830000128402	ENSGT00520000055955	ENSGT00940000161933.f	ENSGT00940000161933.e	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01050000245403.b	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998
Yarkand deer	MODERN SPECIES	3	ENSCHYG00000016536	ADAM21 (ENSCHYG00000016571) #11	ADAM20 (ENSCHYG00000016594) #12	MED6 (ENSCHYG00000016619) #13	ENSCHYG00000016850	TTC9 (ENSCHYG00000016904) #14	MAP3K9 (ENSCHYG00000016964) #15	PCNX1 (ENSCHYG00000017125) #16	SIPA1L1 (ENSCHYG00000017418) #17	ENSCHYG00000017850	RGS6 (ENSCHYG00000017945) #18	ENSCHYG00000019264	DPF3 (ENSCHYG00000019349) #19	ENSCHYG00000019600 #20	ZFYVE1 (ENSCHYG00000019875) #21	RBM25 (ENSCHYG00000020072) #22	PSEN1 (ENSCHYG00000020221) #23	PAPLN (ENSCHYG00000020768) #26	NUMB (ENSCHYG00000021106) #27	HEATR4 (ENSCHYG00000021581) #28	RIOX1 (ENSCHYG00000021826)	ACOT6 (ENSCHYG00000021951) #34	DNAL1 (ENSCHYG00000022094) #35	PNMA1 (ENSCHYG00000022219) #36	MIDEAS (ENSCHYG00000022251) #37	PTGR2 (ENSCHYG00000022406)	ZNF410 (ENSCHYG00000022523)	FAM161B (ENSCHYG00000022799)	COQ6 (ENSCHYG00000022859)	ENTPD5 (ENSCHYG00000022954)	BBOF1 (ENSCHYG00000023091)
Percora_a	ANCESTRAL SPECIES	8	ENSGT00940000157547	ENSGT00830000128402	ENSGT00520000055955	ENSGT00940000161933.e	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b.f #32	ENSGT01050000245403.b	ENSGT01010000222336.a.a.a.ob.a.b.e.a #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098
Siberian musk deer	MODERN SPECIES	260	ENSMMSG00000016479	ENSMMSG00000016499	ADAM21 (ENSMMSG00000016525) #11	ENSMMSG00000016564 #12	ENSMMSG00000016669 #12	MED6 (ENSMMSG00000016803) #13	ENSMMSG00000017035	TTC9 (ENSMMSG00000017056) #14	MAP3K9 (ENSMMSG00000017089) #15	PCNX1 (ENSMMSG00000017386) #16	SIPA1L1 (ENSMMSG00000017694) #17	RGS6 (ENSMMSG00000017838) #18	DPF3 (ENSMMSG00000019667) #19	ENSMMSG00000019774 #20	ZFYVE1 (ENSMMSG00000019863) #21	RBM25 (ENSMMSG00000019940) #22	PSEN1 (ENSMMSG00000019994) #23	PAPLN (ENSMMSG00000020113) #26	NUMB (ENSMMSG00000020223) #27	ENSMMSG00000020471 #28	RIOX1 (ENSMMSG00000020569)	ENSMMSG00000020582 #31	ENSMMSG00000020621 #32	ENSMMSG00000020634	ENSMMSG00000020660 #32	ACOT6 (ENSMMSG00000020688) #34	DNAL1 (ENSMMSG00000020722) #35	PNMA1 (ENSMMSG00000020797) #36	MIDEAS (ENSMMSG00000020815) #37	PTGR2 (ENSMMSG00000020873)	ZNF410 (ENSMMSG00000020927)
Bovidae	ANCESTRAL SPECIES	7	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00830000128402	ENSGT00520000055955	ENSGT00940000161933.e	ENSGT00940000162712 #11	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b.f #32	ENSGT01050000245403.b	ENSGT01010000222336.a.a.a.ob.a.b.e.a #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904.a.a #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098
Bovinae	ANCESTRAL SPECIES	11	ENSGT00940000161933.f	ENSGT00940000161933.e	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00950000182878.b.a.c.a.a.b.p.b.b.b	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00950000183198.c.b.b.d	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.ob.a.a.q #31	ENSGT01010000222336.a.a.a.ob.a.b.f.b #32	ENSGT01010000222336.a.a.a.ob.a.a.r #31	ENSGT01010000222336.a.a.a.ob.a.b.f.a #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904.a.a #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793.e	ENSGT00940000158098
Bos	ANCESTRAL SPECIES	13	ENSGT00940000161933.e	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00950000182878.b.a.c.a.a.b.p.b.b.b	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00950000183198.c.a.a.a.a.c.b	ENSGT00390000009546 #20	ENSGT01100000263480.a.a.b.b.b.a.b.a.a.a.a.b.b	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000013207.a #28	ENSGT00390000000083.a	ENSGT00390000013207.b #28	ENSGT01010000222336.a.a.a.ob.a.a.q #31	ENSGT01010000222336.a.a.a.ob.a.b.f.b #32	ENSGT01010000222336.a.a.a.ob.a.a.r #31	ENSGT01010000222336.a.a.a.ob.a.b.f.a #32	ENSGT01010000222336.a.a.a.ob.a.b.e.a #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904.a.a #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37
Bos_b	ANCESTRAL SPECIES	11	ENSGT00940000161933.f	ENSGT00940000161933.e	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00950000183198.c.a.a.a.a.c.b	ENSGT00390000009546 #20	ENSGT01100000263480.a.a.b.b.b.a.b.a.a.a.a.b.b	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207.b #28	ENSGT01010000222336.a.a.a.ob.a.a.q #31	ENSGT01010000222336.a.a.a.ob.a.b.e.b #32	ENSGT01010000222336.a.a.a.ob.a.a.r #31	ENSGT01010000222336.a.a.a.ob.a.b.e.a #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793.e	ENSGT00940000158098	ENSGT00940000159998
Hybrid Bos Indicus	MODERN SPECIES	1	ENSBIXG00005028980	ADAM21 (ENSBIXG00005028972) #11	MED6 (ENSBIXG00005005085) #13	ENSBIXG00005028916	TTC9 (ENSBIXG00005028903) #14	MAP3K9 (ENSBIXG00005005038) #15	PCNX1 (ENSBIXG00005002329) #16	SIPA1L1 (ENSBIXG00005028352) #17	ENSBIXG00005028293	RGS6 (ENSBIXG00005028221) #18	DPF3 (ENSBIXG00005027707) #19	ENSBIXG00005027663	ENSBIXG00005027627 #20	ENSBIXG00005027433	ZFYVE1 (ENSBIXG00005027414) #21	RBM25 (ENSBIXG00005004710) #22	PSEN1 (ENSBIXG00005027250) #23	PAPLN (ENSBIXG00005027160) #26	NUMB (ENSBIXG00005027025) #27	HEATR4 (ENSBIXG00005004597) #28	RIOX1 (ENSBIXG00005026859)	ACOT4 (ENSBIXG00005026831) #32	ACOT6 (ENSBIXG00005026754) #34	PNMA1 (ENSBIXG00005026657) #36	MIDEAS (ENSBIXG00005026640) #37	ENSBIXG00005004549	ZNF410 (ENSBIXG00005026565)	FAM161B (ENSBIXG00005026463)	COQ6 (ENSBIXG00005026440)	ENTPD5 (ENSBIXG00005026381)	BBOF1 (ENSBIXG00005005787)
Cow	MODERN SPECIES	1	ADAM21 (ENSBTAG00000003715) #11	MED6 (ENSBTAG00000006786) #13	ADAM20 (ENSBTAG00000038377) #12	ENSBTAG00000052827	TTC9 (ENSBTAG00000045604) #14	MAP3K9 (ENSBTAG00000005700) #15	PCNX1 (ENSBTAG00000012565) #16	ENSBTAG00000048690	SIPA1L1 (ENSBTAG00000015805) #17	ENSBTAG00000025385	RGS6 (ENSBTAG00000014189) #18	DPF3 (ENSBTAG00000025458) #19	ENSBTAG00000046952	DCAF4 (ENSBTAG00000008713) #20	ZFYVE1 (ENSBTAG00000011041) #21	RBM25 (ENSBTAG00000017177) #22	PSEN1 (ENSBTAG00000011757) #23	PAPLN (ENSBTAG00000011680) #26	NUMB (ENSBTAG00000011683) #27	HEATR4 (ENSBTAG00000002842) #28	RIOX1 (ENSBTAG00000025372)	ACOT2 (ENSBTAG00000046814) #31	ACOT4 (ENSBTAG00000002843) #32	ENSBTAG00000009788 #31	ENSBTAG00000010270 #32	DNAL1 (ENSBTAG00000015930) #34	ENSBTAG00000009783	PNMA1 (ENSBTAG00000009271) #36	MIDEAS (ENSBTAG00000009272) #37	PTGR2 (ENSBTAG00000003747)	ZNF410 (ENSBTAG00000020327)
Bos_a	ANCESTRAL SPECIES	1	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00950000182878.b.a.c.a.a.b.p.b.b.b	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00950000183198.c.b.b.d	ENSGT00940000159153 #19	ENSGT00950000183198.c.a.a.a.a.c.b	ENSGT00390000009546 #20	ENSGT01100000263480.a.a.b.b.b.a.b.a.a.a.a.b.b	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000013207.a #28	ENSGT00390000000083.a	ENSGT00390000013207.b #28	ENSGT01010000222336.a.a.a.ob.a.a.q #31	ENSGT01010000222336.a.a.a.ob.a.b.f.b #32	ENSGT01010000222336.a.a.a.ob.a.a.r #31	ENSGT01010000222336.a.a.a.ob.a.b.f.a #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904.a.a #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793.e
Domestic yak	MODERN SPECIES	2	ENSBGRG00000008867	ENSBGRG00000008921	ADAM21 (ENSBGRG00000008955) #11	MED6 (ENSBGRG00000008994) #13	TTC9 (ENSBGRG00000009323) #14	MAP3K9 (ENSBGRG00000009390) #15	PCNX1 (ENSBGRG00000009684) #16	ENSBGRG00000010436	SIPA1L1 (ENSBGRG00000010469) #17	RGS6 (ENSBGRG00000010823) #18	DPF3 (ENSBGRG00000013900) #19	ENSBGRG00000014383	ENSBGRG00000014407 #20	ENSBGRG00000014589	ZFYVE1 (ENSBGRG00000014619) #21	RBM25 (ENSBGRG00000014814) #22	ENSBGRG00000014962	PSEN1 (ENSBGRG00000015004) #23	PAPLN (ENSBGRG00000015385) #26	NUMB (ENSBGRG00000016469) #27	ENSBGRG00000016829 #28	RIOX1 (ENSBGRG00000016972)	ENSBGRG00000017051 #28	ENSBGRG00000017115 #31	ACOT6 (ENSBGRG00000017306) #34	ENSBGRG00000017382	ENSBGRG00000017419	ENSBGRG00000017483	ENSBGRG00000017562 #35	PNMA1 (ENSBGRG00000017709) #36	MIDEAS (ENSBGRG00000017732) #37
Wild yak	MODERN SPECIES	605											RGS6 (ENSBMUG00000010121) #18	ENSBMUG00000009890	DPF3 (ENSBMUG00000009879) #19	ENSBMUG00000009848 #20	ZFYVE1 (ENSBMUG00000009820) #21	RBM25 (ENSBMUG00000009795) #22	PSEN1 (ENSBMUG00000009750) #23	PAPLN (ENSBMUG00000009643) #26	NUMB (ENSBMUG00000009175) #27	RIOX1 (ENSBMUG00000008961)	ENSBMUG00000008951 #28	ENSBMUG00000008918 #31	ENSBMUG00000008907 #32	ENSBMUG00000008887 #31	ENSBMUG00000008879 #32	ENSBMUG00000008872 #34	ENSBMUG00000008866	DNAL1 (ENSBMUG00000008848) #35	PNMA1 (ENSBMUG00000008814) #36	MIDEAS (ENSBMUG00000008801) #37	PTGR2 (ENSBMUG00000008747)
American bison	MODERN SPECIES	3282	KRTAP13-3 (ENSBBBG00000012685)	ENSBBBG00000001820	ENSBBBG00000012701	ENSBBBG00000008108	ENSBBBG00000001818	KRTAP24-1 (ENSBBBG00000002451)	CLDN8 (ENSBBBG00000012718)	CLDN17 (ENSBBBG00000012722)	GRIK1 (ENSBBBG00000012874)	BACH1 (ENSBBBG00000012897)	RGS6 (ENSBBBG00000013128) #18	ENSBBBG00000013152	DPF3 (ENSBBBG00000013175) #19	ENSBBBG00000002672 #20	ZFYVE1 (ENSBBBG00000013262) #21	RBM25 (ENSBBBG00000002704) #22	PSEN1 (ENSBBBG00000001581) #23	PAPLN (ENSBBBG00000002766) #26	NUMB (ENSBBBG00000002909) #27	ENSBBBG00000002932 #28	ENSBBBG00000013743 #31	ENSBBBG00000007896 #32	ENSBBBG00000002936 #31	ENSBBBG00000013752 #32	ACOT6 (ENSBBBG00000013759) #34	DNAL1 (ENSBBBG00000013792) #35	PNMA1 (ENSBBBG00000013798) #36	MIDEAS (ENSBBBG00000013823) #37	PTGR2 (ENSBBBG00000002974)	ZNF410 (ENSBBBG00000003035)	FAM161B (ENSBBBG00000013948)
Caprinae	ANCESTRAL SPECIES	11	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00830000128402	ENSGT00520000055955	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000013207 #28	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01050000245403.b	ENSGT01010000222336.a.a.a.ob.a.b.e.b #32	ENSGT01010000222336.a.a.a.ob.a.b.e.a #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904.a.a #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098
Rambouillet Sheep	MODERN SPECIES	23	SMOC1 (ENSOARG00020004340)	SLC8A3 (ENSOARG00020004383)	ENSOARG00020004591	ENSOARG00020004609	MED6 (ENSOARG00020004653) #13	ENSOARG00020004754	TTC9 (ENSOARG00020004790) #14	MAP3K9 (ENSOARG00020004823) #15	PCNX1 (ENSOARG00020004951) #16	SIPA1L1 (ENSOARG00020005315) #17	RGS6 (ENSOARG00020005779) #18	ENSOARG00020009866	DPF3 (ENSOARG00020009903) #19	DCAF4 (ENSOARG00020010137) #20	ZFYVE1 (ENSOARG00020010565) #21	RBM25 (ENSOARG00020011125) #22	ENSOARG00020011255	PSEN1 (ENSOARG00020011326) #23	PAPLN (ENSOARG00020011520) #26	NUMB (ENSOARG00020011742) #27	ENSOARG00020012105 #28	RIOX1 (ENSOARG00020012228)	ENSOARG00020012249 #31	ENSOARG00020012308 #32	ENSOARG00020012357 #31	ENSOARG00020012431 #32	ACOT6 (ENSOARG00020012471) #34	ENSOARG00020012528	ENSOARG00020012555 #35	PNMA1 (ENSOARG00020012650) #36	MIDEAS (ENSOARG00020012681) #37
Goat	DUPLICATION
Goat	MODERN SPECIES	1	COX16 (ENSCHIG00000016082)	ADAM21 (ENSCHIG00000009441) #11	ADAM20 (ENSCHIG00000026951) #12	ENSCHIG00000011291	MED6 (ENSCHIG00000024218) #13	TTC9 (ENSCHIG00000023182) #14	MAP3K9 (ENSCHIG00000016673) #15	PCNX1 (ENSCHIG00000026327) #16	SIPA1L1 (ENSCHIG00000020272) #17	RGS6 (ENSCHIG00000000519) #18	DPF3 (ENSCHIG00000024523) #19	ENSCHIG00000014966 #20	ZFYVE1 (ENSCHIG00000011591) #21	ENSCHIG00000021905 #22	ENSCHIG00000010764	ENSCHIG00000021190 #22	PSEN1 (ENSCHIG00000025284) #23	PAPLN (ENSCHIG00000018573) #26	ENSCHIG00000023603	NUMB (ENSCHIG00000017411) #27	RIOX1 (ENSCHIG00000024709)	ENSCHIG00000013624 #31	ENSCHIG00000022908	ENSCHIG00000008334 #32	HEATR4 (ENSCHIG00000016869) #28	ENSCHIG00000026395	ENSCHIG00000015407 #32	ENSCHIG00000025534 #34	ENSCHIG00000012677 #35	PNMA1 (ENSCHIG00000005409) #36	MIDEAS (ENSCHIG00000025351) #37
Goat	MODERN SPECIES	1	SLC8A3 (ENSCHIG00000011087)	ENSCHIG00000022232	COX16 (ENSCHIG00000016082)	ADAM21 (ENSCHIG00000009441) #11	ADAM20 (ENSCHIG00000026951) #12	ENSCHIG00000011291	MED6 (ENSCHIG00000024218) #13	TTC9 (ENSCHIG00000023182) #14	MAP3K9 (ENSCHIG00000016673) #15	PCNX1 (ENSCHIG00000026327) #16	SIPA1L1 (ENSCHIG00000020272) #17	RGS6 (ENSCHIG00000000519) #18	DPF3 (ENSCHIG00000024523) #19	ENSCHIG00000014966 #20	ZFYVE1 (ENSCHIG00000011591) #21	ENSCHIG00000021905 #22	ENSCHIG00000010764	ENSCHIG00000021190 #22	PSEN1 (ENSCHIG00000025284) #23	PAPLN (ENSCHIG00000018573) #26	ENSCHIG00000023603	NUMB (ENSCHIG00000017411) #27	RIOX1 (ENSCHIG00000024709)	ENSCHIG00000013624 #31	ENSCHIG00000022908	ENSCHIG00000008334 #32	HEATR4 (ENSCHIG00000016869) #28	ENSCHIG00000026395	ENSCHIG00000015407 #32	ENSCHIG00000025534 #34	ENSCHIG00000012677 #35
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00730000111019 #22
Common shrew	MODERN SPECIES	1459																RBM25 (ENSSARG00000002327) #22	ENSSARG00000002293
Hedgehog	MODERN SPECIES	2053																RBM25 (ENSEEUG00000007350) #22
Atlantogenata	ANCESTRAL SPECIES	8	ENSGT00940000157547	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000161933	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000013207 #28	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998	ENSGT00390000015152
Xenarthra	ANCESTRAL SPECIES	1056													ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23
Armadillo	MODERN SPECIES	2300												ENSDNOG00000038818 #19	ENSDNOG00000042933 #20	ZFYVE1 (ENSDNOG00000005262) #21	ENSDNOG00000046791	RBM25 (ENSDNOG00000004959) #22	PSEN1 (ENSDNOG00000030820) #23
Sloth	MODERN SPECIES	1770																RBM25 (ENSCHOG00000008903) #22
Afrotheria	ANCESTRAL SPECIES	6	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00830000128402	ENSGT00940000161933	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000166770	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000013207 #28	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998
Tenrec	MODERN SPECIES	1953																RBM25 (ENSETEG00000015941) #22
Afrotheria_a	ANCESTRAL SPECIES	6	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00830000128402	ENSGT00940000161933	ENSGT00940000162712 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000166770	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000013207 #28	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b #32	ENSGT01010000222336.a.a.a.ob.b #34	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998
Hyrax	MODERN SPECIES	1572														ENSPCAG00000006051 #20	ZFYVE1 (ENSPCAG00000006139) #21	RBM25 (ENSPCAG00000006226) #22
Elephant	MODERN SPECIES	26	BCL2L15 (ENSLAFG00000008055)	AP4B1 (ENSLAFG00000008056)	DCLRE1B (ENSLAFG00000008062)	HIPK1 (ENSLAFG00000008067)	OLFML3 (ENSLAFG00000008070)	SYT6 (ENSLAFG00000013416)	ENSLAFG00000026214	TRIM33 (ENSLAFG00000001666)	BCAS2 (ENSLAFG00000003183)	DENND2C (ENSLAFG00000003184)	AMPD1 (ENSLAFG00000007144)	NRAS (ENSLAFG00000020706)	CSDE1 (ENSLAFG00000007150)	SIKE1 (ENSLAFG00000010502)	ENSLAFG00000028744	ENSLAFG00000030508 #22	TSHB (ENSLAFG00000030671)	TSPAN2 (ENSLAFG00000006453)	NGF (ENSLAFG00000028282)	ENSLAFG00000022285	VANGL1 (ENSLAFG00000003272)	CASQ2 (ENSLAFG00000003274)	NHLH2 (ENSLAFG00000007456)	SLC22A15 (ENSLAFG00000004144)	MAB21L3 (ENSLAFG00000023352)	ATP1A1 (ENSLAFG00000015690)	IGSF3 (ENSLAFG00000000958)	CD2 (ENSLAFG00000014389)	PTGFRN (ENSLAFG00000005517)	CD101 (ENSLAFG00000005521)	ENSLAFG00000006808
Marsupialia	ANCESTRAL SPECIES		ENSGT00940000157547	ENSGT00390000018436.a.a	ENSGT00940000161067.c #12	ENSGT00940000161933	ENSGT00940000161067.d #12	ENSGT00940000162954.l	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00940000164083	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000166770	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.mb.a #34	ENSGT01010000222336.a.a.a.nb #34	ENSGT00390000016904 #35	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998	ENSGT00390000015152	ENSGT01100000263540.A.b
Opossum	MODERN SPECIES		SMOC1 (ENSMODG00000007249)	ENSMODG00000007233	ENSMODG00000007213 #12	ENSMODG00000038508	MED6 (ENSMODG00000007174) #13	TTC9 (ENSMODG00000007159) #14	MAP3K9 (ENSMODG00000007149) #15	PCNX1 (ENSMODG00000007103) #16	SIPA1L1 (ENSMODG00000007046) #17	ENSMODG00000024008	RGS6 (ENSMODG00000007000) #18	ENSMODG00000038916	DPF3 (ENSMODG00000028306) #19	ENSMODG00000006889	ZFYVE1 (ENSMODG00000006861) #21	RBM25 (ENSMODG00000006820) #22	PSEN1 (ENSMODG00000006792) #23	PAPLN (ENSMODG00000006768) #26	NUMB (ENSMODG00000006741) #27	ENSMODG00000024012	ENSMODG00000025737 #28	ENSMODG00000006686 #34	ENSMODG00000006662 #34	MIDEAS (ENSMODG00000006656) #37	PTGR2 (ENSMODG00000006640)	ZNF410 (ENSMODG00000006622)	FAM161B (ENSMODG00000006602)	COQ6 (ENSMODG00000006592)	ENTPD5 (ENSMODG00000006552)	BBOF1 (ENSMODG00000006384)	ALDH6A1 (ENSMODG00000006429)
Marsupialia_b	ANCESTRAL SPECIES		ENSGT00390000018436.a.a	ENSGT00940000161067.c #12	ENSGT00940000161933	ENSGT00940000161067.d #12	ENSGT00940000162954.l	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00940000164083	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000166770	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.mb.a #34	ENSGT01010000222336.a.a.a.mb.b #34	ENSGT01010000222336.a.a.a.nb #34	ENSGT00390000016904 #35	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098	ENSGT00940000159998	ENSGT00390000015152
Diprotodontia	ANCESTRAL SPECIES		ENSGT00390000018436.a.a	ENSGT00940000161067.c #12	ENSGT00940000161933	ENSGT00940000161067.d #12	ENSGT00940000162954.l	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153.u #19	ENSGT00940000164083	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.mb.a #34	ENSGT01010000222336.a.a.a.mb.b #34	ENSGT01010000222336.a.a.a.nb #34	ENSGT00390000016904 #35	ENSGT00940000157459 #37	ENSGT00940000156793.j	ENSGT00940000156793.i.a	ENSGT00940000158098	ENSGT00940000159998	ENSGT00390000015152
Diprotodontia_a	ANCESTRAL SPECIES	1	ENSGT00940000161067.c #12	ENSGT00940000161933	ENSGT00940000161067.d #12	ENSGT00940000162954.l	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00970000197229	ENSGT00940000159153.u #19	ENSGT00390000009546 #20	ENSGT00940000164083	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.mb.a #34	ENSGT01010000222336.a.a.a.mb.b #34	ENSGT01010000222336.a.a.a.nb #34	ENSGT00390000016904 #35	ENSGT00940000157459 #37	ENSGT00940000156793.j	ENSGT00940000158098	ENSGT00940000159998	ENSGT00390000015152	ENSGT01100000263540.A.b
Common wonbat	MODERN SPECIES	1131	ENSVURG00010019738	ENSVURG00010019729 #12	ENSVURG00010019715	ENSVURG00010019702 #12	ENSVURG00010019688 #13	ENSVURG00010019679 #14	ENSVURG00010019586 #15	ENSVURG00010019507 #16	ENSVURG00010019453 #17	ENSVURG00010019140 #18	ENSVURG00010019116	ENSVURG00010019112	ENSVURG00010019107 #19	ENSVURG00010019094	ZFYVE1 (ENSVURG00010019074) #21	RBM25 (ENSVURG00010019040) #22	PSEN1 (ENSVURG00010019017) #23	PAPLN (ENSVURG00010018996) #26	NUMB (ENSVURG00010018654) #27	RIOX1 (ENSVURG00010018617)	ENSVURG00010018608 #28	ENSVURG00010018604 #34	ENSVURG00010018598 #34	ENSVURG00010018553 #34	ENSVURG00010018542	DNAL1 (ENSVURG00010018526) #35	MIDEAS (ENSVURG00010018511) #37	PTGR2 (ENSVURG00010018483)	ZNF410 (ENSVURG00010018464)	FAM161B (ENSVURG00010018456)	COQ6 (ENSVURG00010018429)
koala	MODERN SPECIES	24	ENSPCIG00000012579	ENSPCIG00000036055 #12	ENSPCIG00000012576	MED6 (ENSPCIG00000012574) #13	TTC9 (ENSPCIG00000012571) #14	MAP3K9 (ENSPCIG00000012567) #15	PCNX1 (ENSPCIG00000012559) #16	SIPA1L1 (ENSPCIG00000026282) #17	RGS6 (ENSPCIG00000008069) #18	ENSPCIG00000008090	ENSPCIG00000008091	ENSPCIG00000008092	DPF3 (ENSPCIG00000008080) #19	ENSPCIG00000019926 #20	ZFYVE1 (ENSPCIG00000019924) #21	RBM25 (ENSPCIG00000011166) #22	PSEN1 (ENSPCIG00000011174) #23	PAPLN (ENSPCIG00000019359) #26	NUMB (ENSPCIG00000019351) #27	RIOX1 (ENSPCIG00000024145)	HEATR4 (ENSPCIG00000024141) #28	ENSPCIG00000024100 #34	ENSPCIG00000024095 #34	ENSPCIG00000033915 #34	ENSPCIG00000024093	DNAL1 (ENSPCIG00000024092) #35	MIDEAS (ENSPCIG00000024091) #37	ENSPCIG00000005571	ENSPCIG00000034997	ENSPCIG00000022693	ZNF410 (ENSPCIG00000011341)
Wallaby	MODERN SPECIES	2827																RBM25 (ENSMEUG00000000612) #22
Tasmanian devil	MODERN SPECIES	1	ENSSHAG00000018865	ENSSHAG00000018809	ENSSHAG00000018776 #12	ENSSHAG00000022283 #12	ENSSHAG00000026666	MED6 (ENSSHAG00000018732) #13	TTC9 (ENSSHAG00000031022) #14	MAP3K9 (ENSSHAG00000018555) #15	PCNX1 (ENSSHAG00000018199) #16	SIPA1L1 (ENSSHAG00000017447) #17	RGS6 (ENSSHAG00000015823) #18	ENSSHAG00000014485	DPF3 (ENSSHAG00000020633) #19	ENSSHAG00000013565	ZFYVE1 (ENSSHAG00000013196) #21	ENSSHAG00000025941 #22	ENSSHAG00000022176	PSEN1 (ENSSHAG00000012415) #23	PAPLN (ENSSHAG00000011829) #26	NUMB (ENSSHAG00000011576) #27	RIOX1 (ENSSHAG00000010401)	HEATR4 (ENSSHAG00000009817) #28	ENSSHAG00000009654 #34	ENSSHAG00000025570 #34	ENSSHAG00000008828 #34	MIDEAS (ENSSHAG00000031948) #37	PTGR2 (ENSSHAG00000005465)	ZNF410 (ENSSHAG00000004595)	FAM161B (ENSSHAG00000003982)	COQ6 (ENSSHAG00000003508)	ENTPD5 (ENSSHAG00000022376)
Platypus	MODERN SPECIES		SMOC1 (ENSOANG00000037151)	SLC8A3 (ENSOANG00000043616)	ENSOANG00000049349	MED6 (ENSOANG00000005497) #13	ENSOANG00000013835 #12	ENSOANG00000038251 #12	ENSOANG00000005300	ENSOANG00000041791 #14	ENSOANG00000043704 #15	PCNX1 (ENSOANG00000036004) #16	SIPA1L1 (ENSOANG00000014068) #17	RGS6 (ENSOANG00000004085) #18	DPF3 (ENSOANG00000045314) #19	ENSOANG00000001699	ZFYVE1 (ENSOANG00000040766) #21	RBM25 (ENSOANG00000001056) #22	PSEN1 (ENSOANG00000001055) #23	ENSOANG00000037772 #26	ENSOANG00000037472 #27	ENSOANG00000049924 #28	ENSOANG00000042629	ENSOANG00000042764 #34	ENSOANG00000037587 #34	DNAL1 (ENSOANG00000045825) #35	MIDEAS (ENSOANG00000044931) #37	ENSOANG00000049648	PTGR2 (ENSOANG00000048501)	ZNF410 (ENSOANG00000040286)	COQ6 (ENSOANG00000040258)	BBOF1 (ENSOANG00000008768)	ALDH6A1 (ENSOANG00000043355)
Sauria	ANCESTRAL SPECIES	3	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00520000055955	ENSGT00940000164487	ENSGT00830000128402	ENSGT00940000161067.z #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00940000164083	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000166770	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a #34	ENSGT00390000016904 #35	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00390000016216	ENSGT00950000183075.a.a.a.b	ENSGT00940000163655	ENSGT00940000160367	ENSGT00940000173951
Archelosauria	ANCESTRAL SPECIES	2	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00520000055955	ENSGT00940000164487	ENSGT00830000128402	ENSGT00940000161067.z #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00940000164083	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000166770	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a #34	ENSGT00390000016904 #35	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00390000016216	ENSGT00950000183075.a.a.a.b	ENSGT00940000163655	ENSGT00940000160367	ENSGT00940000173951
Archosauria	ANCESTRAL SPECIES	5	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00520000055955	ENSGT00940000164487	ENSGT00830000128402	ENSGT00940000161067.z #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00940000164083	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00990000210315	ENSGT00940000166770	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a #34	ENSGT00390000016904 #35	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00390000016216	ENSGT00950000183075.a.a.a.b	ENSGT00940000163655	ENSGT00940000165311
Australian saltwater crocodile	MODERN SPECIES	64	SLC8A3 (ENSCPRG00005018195)	COX16 (ENSCPRG00005018204)	ENSCPRG00005018207	SYNJ2BP (ENSCPRG00005018208)	ENSCPRG00005018209 #12	ENSCPRG00005018212 #12	MED6 (ENSCPRG00005018219) #13	TTC9 (ENSCPRG00005018227) #14	MAP3K9 (ENSCPRG00005018230) #15	PCNX1 (ENSCPRG00005018238) #16	SIPA1L1 (ENSCPRG00005018251) #17	RGS6 (ENSCPRG00005018258) #18	DPF3 (ENSCPRG00005018260) #19	ENSCPRG00005018262	ZFYVE1 (ENSCPRG00005018267) #21	RBM25 (ENSCPRG00005018269) #22	PSEN1 (ENSCPRG00005018271) #23	PAPLN (ENSCPRG00005018276) #26	NUMB (ENSCPRG00005018289) #27	RIOX1 (ENSCPRG00005018318)	ENSCPRG00005018322 #28	ENSCPRG00005018333 #34	DNAL1 (ENSCPRG00005018342) #35	MIDEAS (ENSCPRG00005018346) #37	PTGR2 (ENSCPRG00005018352)	TMEM62 (ENSCPRG00005018356)	UBR1 (ENSCPRG00005018360)	ENSCPRG00005018369	ENSCPRG00005018370	TTBK2 (ENSCPRG00005018374)	ENSCPRG00005018382
Aves	ANCESTRAL SPECIES	2	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00520000055955	ENSGT00940000164487	ENSGT00830000128402	ENSGT00940000161067.z #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00940000164083	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00990000210315	ENSGT00940000166770	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a #34	ENSGT00390000016904 #35	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00390000016216	ENSGT00950000183075.a.a.a.b	ENSGT00940000163655	ENSGT00940000165311	ENSGT00940000160367
African ostrich	MODERN SPECIES	454													DPF3 (ENSSCUG00000007238) #19	ENSSCUG00000007246	ZFYVE1 (ENSSCUG00000007249) #21	RBM25 (ENSSCUG00000007254) #22	PSEN1 (ENSSCUG00000007259) #23	PAPLN (ENSSCUG00000007263) #26	NUMB (ENSSCUG00000007272) #27	ENSSCUG00000007283 #28	DNAL1 (ENSSCUG00000007290) #35	ENSSCUG00000007294
Neognathae	ANCESTRAL SPECIES	4	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00520000055955	ENSGT00940000164487	ENSGT00830000128402	ENSGT00940000161067.z #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00940000164083	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000166770	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.j.b #34	ENSGT01010000222336.a.a.a.j.a #34	ENSGT01050000245403	ENSGT01010000222336.a.a.a.k #34	ENSGT00390000016904 #35	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00390000016216	ENSGT00950000183075.a.a.a.b	ENSGT00940000163655
Neognathae_b	ANCESTRAL SPECIES	6	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00520000055955	ENSGT00940000164487	ENSGT00830000128402	ENSGT00940000161067.z #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00940000164083	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.j.b #34	ENSGT01010000222336.a.a.a.j.a #34	ENSGT01050000245403	ENSGT01010000222336.a.a.a.k #34	ENSGT00390000016904 #35	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00390000016216	ENSGT00950000183075.a.a.a.b	ENSGT00940000163655	ENSGT00940000160367
Neognathae_c	ANCESTRAL SPECIES	6	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00520000055955	ENSGT00940000164487	ENSGT00830000128402	ENSGT00940000161067.z #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00940000164083	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.j.b #34	ENSGT01010000222336.a.a.a.j.a #34	ENSGT01010000222336.a.a.a.k #34	ENSGT00390000016904 #35	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00390000016216	ENSGT00950000183075.a.a.a.b	ENSGT00940000163655	ENSGT00940000160367	ENSGT00940000173951
Kakapo	MODERN SPECIES	21	KLHL28 (ENSSHBG00005007110)	LRFN5 (ENSSHBG00005007143)	ENSSHBG00005007158	ENSSHBG00005007182	SYNJ2BP (ENSSHBG00005007206)	ADAM20 (ENSSHBG00005007223) #12	MED6 (ENSSHBG00005007237) #13	TTC9 (ENSSHBG00005007255) #14	MAP3K9 (ENSSHBG00005007269) #15	PCNX1 (ENSSHBG00005007373) #16	SIPA1L1 (ENSSHBG00005007504) #17	RGS6 (ENSSHBG00005007568) #18	DPF3 (ENSSHBG00005007630) #19	ENSSHBG00005007656	ZFYVE1 (ENSSHBG00005007695) #21	RBM25 (ENSSHBG00005007722) #22	PSEN1 (ENSSHBG00005007748) #23	PAPLN (ENSSHBG00005007787) #26	NUMB (ENSSHBG00005009580) #27	ENSSHBG00005009601	RIOX1 (ENSSHBG00005009607)	ENSSHBG00005009618	ENSSHBG00005009629	DAAM1 (ENSSHBG00005009642)	GPR135 (ENSSHBG00005009655)	L3HYPDH (ENSSHBG00005009659)	JKAMP (ENSSHBG00005009664)	RTN1 (ENSSHBG00005009678)	PCNX4 (ENSSHBG00005009689)	DHRS7 (ENSSHBG00005009699)	PPM1A (ENSSHBG00005009710)
Golden eagle	MODERN SPECIES	11	SLC10A1 (ENSACCG00020004418)	SMOC1 (ENSACCG00020004454)	SLC8A3 (ENSACCG00020004500)	ENSACCG00020004523	ENSACCG00020004549	ADAM20 (ENSACCG00020004578) #12	MED6 (ENSACCG00020004586) #13	TTC9 (ENSACCG00020004592) #14	MAP3K9 (ENSACCG00020004601) #15	PCNX1 (ENSACCG00020004641) #16	SIPA1L1 (ENSACCG00020004680) #17	RGS6 (ENSACCG00020004790) #18	DPF3 (ENSACCG00020004883) #19	ENSACCG00020004908	ZFYVE1 (ENSACCG00020004921) #21	RBM25 (ENSACCG00020004935) #22	PSEN1 (ENSACCG00020004958) #23	PAPLN (ENSACCG00020004980) #26	NUMB (ENSACCG00020004999) #27	RIOX1 (ENSACCG00020004723)	ENSACCG00020004727 #34	ENSACCG00020004737 #34	DNAL1 (ENSACCG00020004745) #35	MIDEAS (ENSACCG00020004753) #37	PTGR2 (ENSACCG00020004764)	TMEM62 (ENSACCG00020004771)	UBR1 (ENSACCG00020004952)	ENSACCG00020005085	TTBK2 (ENSACCG00020005095)	ENSACCG00020005115	ENSACCG00020005121
Passeriformes	ANCESTRAL SPECIES	5	ENSGT00940000157547	ENSGT00520000055955	ENSGT00940000164487	ENSGT00830000128402	ENSGT00940000161067.z #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT01030000235253.c.a	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00940000164083	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.j.b #34	ENSGT01010000222336.a.a.a.j.a #34	ENSGT01050000245403	ENSGT01010000222336.a.a.a.k #34	ENSGT00390000016904 #35	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00390000016216	ENSGT00950000183075.a.a.a.b	ENSGT00940000163655	ENSGT00940000160367
Great tit	MODERN SPECIES	25	SLC8A3 (ENSPMJG00000015039)	COX16 (ENSPMJG00000015038)	ENSPMJG00000015037	SYNJ2BP (ENSPMJG00000015035)	ADAM20 (ENSPMJG00000015034) #12	MED6 (ENSPMJG00000015033) #13	TTC9 (ENSPMJG00000015032) #14	MAP3K9 (ENSPMJG00000015031) #15	PCNX1 (ENSPMJG00000015029) #16	SIPA1L1 (ENSPMJG00000015028) #17	ENSPMJG00000015026	RGS6 (ENSPMJG00000015025) #18	DPF3 (ENSPMJG00000014996) #19	ENSPMJG00000014995	ZFYVE1 (ENSPMJG00000014994) #21	RBM25 (ENSPMJG00000014993) #22	PSEN1 (ENSPMJG00000014992) #23	PAPLN (ENSPMJG00000014991) #26	NUMB (ENSPMJG00000014990) #27	RIOX1 (ENSPMJG00000014989)	ENSPMJG00000014988 #34	ENSPMJG00000014987 #34	ENSPMJG00000014986 #34	DNAL1 (ENSPMJG00000014985) #35	MIDEAS (ENSPMJG00000014984) #37	PTGR2 (ENSPMJG00000014983)	TMEM62 (ENSPMJG00000014980)	UBR1 (ENSPMJG00000014805)	ENSPMJG00000014795	TTBK2 (ENSPMJG00000014794)	ENSPMJG00000014793
Passeriformes_d	ANCESTRAL SPECIES	5	ENSGT00940000157547	ENSGT00520000055955	ENSGT00940000164487	ENSGT00830000128402	ENSGT00940000161067.z #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT01030000235253.c.a	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00940000164083	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.j.b #34	ENSGT01010000222336.a.a.a.j.a #34	ENSGT01050000245403	ENSGT00940000179287	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00390000016216	ENSGT00950000183075.a.a.a.b	ENSGT00940000163655	ENSGT00940000160367	ENSGT00940000164449
Passeriformes_g	ANCESTRAL SPECIES		ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00520000055955	ENSGT00940000164487	ENSGT00830000128402	ENSGT00940000161067.z #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00940000164083	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.j.b #34	ENSGT01010000222336.a.a.a.j.a #34	ENSGT01050000245403	ENSGT00940000179287	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00390000016216	ENSGT00950000183075.a.a.a.b	ENSGT00940000163655	ENSGT00940000160367	ENSGT00940000164449
Medium ground finch	DUPLICATION
Medium ground finch	MODERN SPECIES	4	SMOC1 (ENSGFOG00000008788)	SLC8A3 (ENSGFOG00000008815)	COX16 (ENSGFOG00000008833)	ENSGFOG00000008838	SYNJ2BP (ENSGFOG00000008845)	ADAM20 (ENSGFOG00000008849) #12	MED6 (ENSGFOG00000008853) #13	TTC9 (ENSGFOG00000008857) #14	ENSGFOG00000008860	PCNX1 (ENSGFOG00000008876) #16	SIPA1L1 (ENSGFOG00000008915) #17	RGS6 (ENSGFOG00000008939) #18	DPF3 (ENSGFOG00000000802) #19	ENSGFOG00000000846	ZFYVE1 (ENSGFOG00000000858) #21	ENSGFOG00000000901 #22	ENSGFOG00000000928 #22	PSEN1 (ENSGFOG00000000971) #23	PAPLN (ENSGFOG00000000989) #26	ENSGFOG00000001034 #26	NUMB (ENSGFOG00000001050) #27	ENSGFOG00000001071 #34	ENSGFOG00000001079 #34	ENSGFOG00000001085	ENSGFOG00000001105 #34	ENSGFOG00000001139	MIDEAS (ENSGFOG00000001146) #37	PTGR2 (ENSGFOG00000001154)	TMEM62 (ENSGFOG00000001168)	UBR1 (ENSGFOG00000001196)	ENSGFOG00000001247
Medium ground finch	MODERN SPECIES	4	SLC8A3 (ENSGFOG00000008815)	COX16 (ENSGFOG00000008833)	ENSGFOG00000008838	SYNJ2BP (ENSGFOG00000008845)	ADAM20 (ENSGFOG00000008849) #12	MED6 (ENSGFOG00000008853) #13	TTC9 (ENSGFOG00000008857) #14	ENSGFOG00000008860	PCNX1 (ENSGFOG00000008876) #16	SIPA1L1 (ENSGFOG00000008915) #17	RGS6 (ENSGFOG00000008939) #18	DPF3 (ENSGFOG00000000802) #19	ENSGFOG00000000846	ZFYVE1 (ENSGFOG00000000858) #21	ENSGFOG00000000901 #22	ENSGFOG00000000928 #22	PSEN1 (ENSGFOG00000000971) #23	PAPLN (ENSGFOG00000000989) #26	ENSGFOG00000001034 #26	NUMB (ENSGFOG00000001050) #27	ENSGFOG00000001071 #34	ENSGFOG00000001079 #34	ENSGFOG00000001085	ENSGFOG00000001105 #34	ENSGFOG00000001139	MIDEAS (ENSGFOG00000001146) #37	PTGR2 (ENSGFOG00000001154)	TMEM62 (ENSGFOG00000001168)	UBR1 (ENSGFOG00000001196)	ENSGFOG00000001247
Passeroidea	ANCESTRAL SPECIES	1	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00520000055955	ENSGT00940000164487	ENSGT00830000128402	ENSGT00940000161067.z #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00940000164083	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.j.b #34	ENSGT01010000222336.a.a.a.j.a #34	ENSGT01050000245403	ENSGT01010000222336.a.a.a.k #34	ENSGT00390000016904 #35	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00390000016216	ENSGT00950000183075.a.a.a.b	ENSGT00940000163655	ENSGT00940000160367
Common canary	MODERN SPECIES	3	SLC10A1 (ENSSCAG00000013347)	SMOC1 (ENSSCAG00000013360)	SLC8A3 (ENSSCAG00000013370)	COX16 (ENSSCAG00000013377)	ENSSCAG00000013386	ADAM20 (ENSSCAG00000013397) #12	MED6 (ENSSCAG00000013399) #13	TTC9 (ENSSCAG00000013403) #14	MAP3K9 (ENSSCAG00000013423) #15	PCNX1 (ENSSCAG00000013483) #16	SIPA1L1 (ENSSCAG00000013689) #17	RGS6 (ENSSCAG00000013705) #18	DPF3 (ENSSCAG00000013719) #19	ENSSCAG00000013733	ZFYVE1 (ENSSCAG00000013748) #21	RBM25 (ENSSCAG00000013754) #22	PSEN1 (ENSSCAG00000013766) #23	PAPLN (ENSSCAG00000013778) #26	NUMB (ENSSCAG00000013819) #27	ENSSCAG00000013889 #34	ENSSCAG00000013894	ENSSCAG00000013898 #34	DNAL1 (ENSSCAG00000013903) #35	MIDEAS (ENSSCAG00000013910) #37	PTGR2 (ENSSCAG00000013915)	TMEM62 (ENSSCAG00000013920)	UBR1 (ENSSCAG00000013934)	ENSSCAG00000013947	TTBK2 (ENSSCAG00000000155)	ENSSCAG00000000262	ENSSCAG00000000386
Zebra finch	MODERN SPECIES	27	SMOC1 (ENSTGUG00000011412)	SLC8A3 (ENSTGUG00000011396)	COX16 (ENSTGUG00000020152)	ENSTGUG00000021662	SYNJ2BP (ENSTGUG00000011384)	ADAM20 (ENSTGUG00000011383) #12	MED6 (ENSTGUG00000011369) #13	TTC9 (ENSTGUG00000028000) #14	MAP3K9 (ENSTGUG00000011356) #15	PCNX1 (ENSTGUG00000011329) #16	SIPA1L1 (ENSTGUG00000011316) #17	RGS6 (ENSTGUG00000011297) #18	DPF3 (ENSTGUG00000011273) #19	ENSTGUG00000011259	ZFYVE1 (ENSTGUG00000011255) #21	RBM25 (ENSTGUG00000011246) #22	PSEN1 (ENSTGUG00000011237) #23	PAPLN (ENSTGUG00000011230) #26	NUMB (ENSTGUG00000011219) #27	RIOX1 (ENSTGUG00000021073)	ENSTGUG00000018133 #34	ENSTGUG00000011215 #34	ENSTGUG00000027450 #34	ENSTGUG00000011213	MIDEAS (ENSTGUG00000011205) #37	PTGR2 (ENSTGUG00000011198)	TMEM62 (ENSTGUG00000011190)	UBR1 (ENSTGUG00000011165)	ENSTGUG00000011163	TTBK2 (ENSTGUG00000011160)	ENSTGUG00000011143
Flycatcher	DUPLICATION
Flycatcher	MODERN SPECIES	24	COX16 (ENSFALG00000023843)	ENSFALG00000022987	ENSFALG00000004932	ADAM20 (ENSFALG00000004930) #12	MED6 (ENSFALG00000027791) #13	TTC9 (ENSFALG00000027309) #14	MAP3K9 (ENSFALG00000004912) #15	PCNX1 (ENSFALG00000004878) #16	SIPA1L1 (ENSFALG00000004858) #17	ENSFALG00000024369	ENSFALG00000025788	RGS6 (ENSFALG00000024014) #18	DPF3 (ENSFALG00000005400) #19	ENSFALG00000005424	ZFYVE1 (ENSFALG00000005433) #21	ENSFALG00000005445 #22	PSEN1 (ENSFALG00000023724) #23	PAPLN (ENSFALG00000005481) #26	NUMB (ENSFALG00000005491) #27	ENSFALG00000026180 #22	RIOX1 (ENSFALG00000014181)	ENSFALG00000005508 #34	ENSFALG00000025868 #34	ENSFALG00000027333	ENSFALG00000026056	MIDEAS (ENSFALG00000005522) #37	PTGR2 (ENSFALG00000005530)	TMEM62 (ENSFALG00000005548)	UBR1 (ENSFALG00000005559)	ENSFALG00000005572	TTBK2 (ENSFALG00000005583)
Flycatcher	MODERN SPECIES	24	MED6 (ENSFALG00000027791) #13	TTC9 (ENSFALG00000027309) #14	MAP3K9 (ENSFALG00000004912) #15	PCNX1 (ENSFALG00000004878) #16	SIPA1L1 (ENSFALG00000004858) #17	ENSFALG00000024369	ENSFALG00000025788	RGS6 (ENSFALG00000024014) #18	DPF3 (ENSFALG00000005400) #19	ENSFALG00000005424	ZFYVE1 (ENSFALG00000005433) #21	ENSFALG00000005445 #22	PSEN1 (ENSFALG00000023724) #23	PAPLN (ENSFALG00000005481) #26	NUMB (ENSFALG00000005491) #27	ENSFALG00000026180 #22	RIOX1 (ENSFALG00000014181)	ENSFALG00000005508 #34	ENSFALG00000025868 #34	ENSFALG00000027333	ENSFALG00000026056	MIDEAS (ENSFALG00000005522) #37	PTGR2 (ENSFALG00000005530)	TMEM62 (ENSFALG00000005548)	UBR1 (ENSFALG00000005559)	ENSFALG00000005572	TTBK2 (ENSFALG00000005583)	ENSFALG00000005592	ENSFALG00000025397	ENSFALG00000023434	HAUS2 (ENSFALG00000027493)
Galloanserae	ANCESTRAL SPECIES	4	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00520000055955	ENSGT00940000164487	ENSGT00830000128402	ENSGT00940000161067.z #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00940000164083	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00990000210315	ENSGT00940000166770	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.j.b #34	ENSGT01010000222336.a.a.a.j.a #34	ENSGT01010000222336.a.a.a.k #34	ENSGT00390000016904 #35	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00390000016216	ENSGT00950000183075.a.a.a.b	ENSGT00940000163655
Anatidae	ANCESTRAL SPECIES	26	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00520000055955	ENSGT00940000164487	ENSGT00830000128402	ENSGT00940000161067.z #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00940000164083	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00990000210315	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.j.b #34	ENSGT01010000222336.a.a.a.j.a #34	ENSGT00940000156793	ENSGT00390000016216	ENSGT00950000183075.a.a.a.b	ENSGT00940000163655	ENSGT00940000165311	ENSGT00940000160367	ENSGT00940000164449	ENSGT00940000164613
Pink-footed goose	MODERN SPECIES	44	SMOC1 (ENSABRG00000015342)	SLC8A3 (ENSABRG00000015338)	COX16 (ENSABRG00000015337)	ENSABRG00000015335	SYNJ2BP (ENSABRG00000015328)	ADAM20 (ENSABRG00000015326) #12	MED6 (ENSABRG00000015324) #13	TTC9 (ENSABRG00000015321) #14	MAP3K9 (ENSABRG00000015315) #15	PCNX1 (ENSABRG00000014543) #16	SIPA1L1 (ENSABRG00000014088) #17	RGS6 (ENSABRG00000012784) #18	DPF3 (ENSABRG00000012697) #19	ENSABRG00000012656	ZFYVE1 (ENSABRG00000012625) #21	RBM25 (ENSABRG00000012594) #22	PSEN1 (ENSABRG00000012553) #23	PAPLN (ENSABRG00000012323) #26	NUMB (ENSABRG00000011868) #27	RIOX1 (ENSABRG00000011833)	ENSABRG00000011804 #34	ENSABRG00000011786 #34	ENSABRG00000011777 #34	ENSABRG00000011773	ENSABRG00000011732	PTGR2 (ENSABRG00000011718)	TMEM62 (ENSABRG00000011539)	UBR1 (ENSABRG00000010714)	ENSABRG00000010635	TTBK2 (ENSABRG00000010332)	ENSABRG00000010036
Duck	MODERN SPECIES	23	ENSAPLG00000023498	SLC8A3 (ENSAPLG00000015553)	SYNJ2BP (ENSAPLG00000015990)	ENSAPLG00000015803	ADAM20 (ENSAPLG00000015993) #12	MED6 (ENSAPLG00000016074) #13	TTC9 (ENSAPLG00000016145) #14	MAP3K9 (ENSAPLG00000016153) #15	PCNX1 (ENSAPLG00000016331) #16	SIPA1L1 (ENSAPLG00000002917) #17	RGS6 (ENSAPLG00000003719) #18	ENSAPLG00000019616	DPF3 (ENSAPLG00000004675) #19	ENSAPLG00000005324	ZFYVE1 (ENSAPLG00000005610) #21	RBM25 (ENSAPLG00000006643) #22	ENSAPLG00000024687	PSEN1 (ENSAPLG00000006843) #23	PAPLN (ENSAPLG00000007165) #26	NUMB (ENSAPLG00000007245) #27	RIOX1 (ENSAPLG00000001531)	ENSAPLG00000029481 #34	ENSAPLG00000007409 #34	ENSAPLG00000007953 #34	ENSAPLG00000008093	PTGR2 (ENSAPLG00000008185)	TMEM62 (ENSAPLG00000008795)	ENSAPLG00000008919	ENSAPLG00000024517	ENSAPLG00000010827	ENSAPLG00000029038
Phasianidae	ANCESTRAL SPECIES	4	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00520000055955	ENSGT00940000164487	ENSGT00830000128402	ENSGT00940000161067.z #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00940000164083	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000166770	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.j.b #34	ENSGT01010000222336.a.a.a.j.a #34	ENSGT01010000222336.a.a.a.k #34	ENSGT00390000016904 #35	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00390000016216	ENSGT00950000183075.a.a.a.b	ENSGT00940000163655	ENSGT00940000160367
Japanese quail	MODERN SPECIES	23	SLC8A3 (ENSCJPG00005014983)	ENSCJPG00005014982	COX16 (ENSCJPG00005014981)	ENSCJPG00005014980	SYNJ2BP (ENSCJPG00005014979)	ADAM20 (ENSCJPG00005014978) #12	MED6 (ENSCJPG00005014977) #13	TTC9 (ENSCJPG00005014976) #14	MAP3K9 (ENSCJPG00005014975) #15	PCNX1 (ENSCJPG00005014974) #16	SIPA1L1 (ENSCJPG00005014973) #17	RGS6 (ENSCJPG00005014972) #18	DPF3 (ENSCJPG00005014971) #19	ENSCJPG00005014969	ZFYVE1 (ENSCJPG00005014968) #21	RBM25 (ENSCJPG00005014967) #22	ENSCJPG00005014966	PSEN1 (ENSCJPG00005014965) #23	PAPLN (ENSCJPG00005014964) #26	NUMB (ENSCJPG00005014963) #27	RIOX1 (ENSCJPG00005014962)	ENSCJPG00005014961 #34	ENSCJPG00005014960 #34	ENSCJPG00005014959 #34	DNAL1 (ENSCJPG00005014958) #35	ENSCJPG00005014957	PTGR2 (ENSCJPG00005014956)	TMEM62 (ENSCJPG00005014955)	UBR1 (ENSCJPG00005014608)	ENSCJPG00005014606	TTBK2 (ENSCJPG00005014605)
Phasianidae_b	ANCESTRAL SPECIES	3	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00520000055955	ENSGT00940000164487	ENSGT00830000128402	ENSGT00940000161067.z #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00940000164083	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00990000210315	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT01010000222336.a.a.a.j.a #34	ENSGT01010000222336.a.a.a.k #34	ENSGT00390000016904 #35	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00390000016216	ENSGT00950000183075.a.a.a.b	ENSGT00940000163655	ENSGT00940000160367	ENSGT00960000187715.a
Chicken	MODERN SPECIES	34	SRSF5 (ENSGALG00010021516)	SLC10A1 (ENSGALG00010021491)	SMOC1 (ENSGALG00010021485)	SLC8A3 (ENSGALG00010021473)	SYNJ2BP (ENSGALG00010023802)	SYNJ2BP (ENSGALG00010021413)	TTC9 (ENSGALG00010021408) #14	ADAM20 (ENSGALG00010021396) #12	MAP3K9 (ENSGALG00010021307) #15	PCNX1 (ENSGALG00010021293) #16	SIPA1L1 (ENSGALG00010021265) #17	RGS6 (ENSGALG00010021257) #18	DPF3 (ENSGALG00010021218) #19	ENSGALG00010021024	ZFYVE1 (ENSGALG00010021022) #21	RBM25 (ENSGALG00010021015) #22	PSEN1 (ENSGALG00010020984) #23	PAPLN (ENSGALG00010020966) #26	NUMB (ENSGALG00010020945) #27	RIOX1 (ENSGALG00010020870)	ENSGALG00010020898 #34	ENSGALG00010020875 #34	DNAL1 (ENSGALG00010020855) #35	MIDEAS (ENSGALG00010020847) #37	PTGR2 (ENSGALG00010020835)	TMEM62 (ENSGALG00010020818)	PRPH2L (ENSGALG00010020790)	UBR1 (ENSGALG00010020775)	TTBK2 (ENSGALG00010020762)	ENSGALG00010019865	ENSGALG00010019846
Turkey	MODERN SPECIES	25	ENSMGAG00000011835	ENSMGAG00000011816	SLC8A3 (ENSMGAG00000011799)	COX16 (ENSMGAG00000011797)	ENSMGAG00000019532	SYNJ2BP (ENSMGAG00000011790)	ADAM20 (ENSMGAG00000022663) #12	MED6 (ENSMGAG00000011781) #13	MAP3K9 (ENSMGAG00000011771) #15	PCNX1 (ENSMGAG00000011764) #16	SIPA1L1 (ENSMGAG00000011759) #17	RGS6 (ENSMGAG00000011744) #18	DPF3 (ENSMGAG00000011727) #19	ENSMGAG00000011720	ZFYVE1 (ENSMGAG00000011711) #21	RBM25 (ENSMGAG00000011707) #22	ENSMGAG00000020282	PSEN1 (ENSMGAG00000011694) #23	PAPLN (ENSMGAG00000011683) #26	NUMB (ENSMGAG00000011670) #27	RIOX1 (ENSMGAG00000016504)	ENSMGAG00000011665 #34	ENSMGAG00000011659 #34	MIDEAS (ENSMGAG00000011652) #37	PTGR2 (ENSMGAG00000011642)	TMEM62 (ENSMGAG00000011638)	UBR1 (ENSMGAG00000011594)	ENSMGAG00000011591	TTBK2 (ENSMGAG00000011588)	ENSMGAG00000011577	ENSMGAG00000022384
Cryptodira	ANCESTRAL SPECIES	3	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00520000055955	ENSGT00940000164487	ENSGT00830000128402	ENSGT00940000161067.z #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00940000164083	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a #34	ENSGT00390000016904 #35	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00390000016216	ENSGT00950000183075.a.a.a.b	ENSGT00940000163655	ENSGT00940000160367	ENSGT00940000173951	ENSGT00960000187715
Chinese turtle	MODERN SPECIES	1478															ZFYVE1 (ENSPSIG00000005895) #21	RBM25 (ENSPSIG00000006058) #22	PSEN1 (ENSPSIG00000006468) #23	PAPLN (ENSPSIG00000007973) #26	NUMB (ENSPSIG00000009521) #27	ENSPSIG00000009756 #28	ENSPSIG00000009852 #34	ENSPSIG00000010193 #34	DNAL1 (ENSPSIG00000010857) #35	MIDEAS (ENSPSIG00000010863) #37	PTGR2 (ENSPSIG00000011175)	TMEM62 (ENSPSIG00000012387)
Testudinoidea	ANCESTRAL SPECIES	3	ENSGT00940000157547	ENSGT00520000055955	ENSGT00940000164487	ENSGT00940000154818.a.b	ENSGT00830000128402	ENSGT00940000161067.z #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00940000164083	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.l.a #34	ENSGT00940000179287	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00390000016216	ENSGT00950000183075.a.a.a.b	ENSGT00940000163655	ENSGT00940000160367	ENSGT00940000173951	ENSGT00960000187715
Testudinidae	ANCESTRAL SPECIES	2	ENSGT00940000157547	ENSGT00520000055955	ENSGT00940000164487	ENSGT00940000154818.a.b	ENSGT00830000128402	ENSGT00940000161067.z #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00940000164083	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT01000000220633	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.l.b #34	ENSGT01010000222336.a.a.a.m #34	ENSGT00390000016904 #35	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00390000016216	ENSGT00950000183075.a.a.a.b	ENSGT00940000163655	ENSGT00940000160367
Goode s thornscrub tortoise	MODERN SPECIES	18	COX16 (ENSGEVG00005015896)	ENSGEVG00005015812	ENSGEVG00005015797	ENSGEVG00005015770	SYNJ2BP (ENSGEVG00005015748)	ADAM20 (ENSGEVG00005015696) #12	MED6 (ENSGEVG00005015663) #13	TTC9 (ENSGEVG00005015650) #14	MAP3K9 (ENSGEVG00005015509) #15	PCNX1 (ENSGEVG00005015398) #16	SIPA1L1 (ENSGEVG00005015348) #17	RGS6 (ENSGEVG00005014917) #18	DPF3 (ENSGEVG00005014818) #19	ENSGEVG00005014783	ZFYVE1 (ENSGEVG00005014745) #21	RBM25 (ENSGEVG00005014715) #22	PSEN1 (ENSGEVG00005014684) #23	ENSGEVG00005014638	PAPLN (ENSGEVG00005014331) #26	NUMB (ENSGEVG00005014237) #27	RIOX1 (ENSGEVG00005014194)	ENSGEVG00005013997 #28	ENSGEVG00005013961 #34	ENSGEVG00005013831 #34	DNAL1 (ENSGEVG00005013780) #35	MIDEAS (ENSGEVG00005013739) #37	PTGR2 (ENSGEVG00005013668)	TMEM62 (ENSGEVG00005013638)	UBR1 (ENSGEVG00005013532)	ENSGEVG00005013468	TTBK2 (ENSGEVG00005013159)
Abingdon island giant tortoise	MODERN SPECIES	797														ENSCABG00000015167	ZFYVE1 (ENSCABG00000015161) #21	RBM25 (ENSCABG00000015153) #22	PSEN1 (ENSCABG00000015000) #23	ENSCABG00000014988	PAPLN (ENSCABG00000014978) #26	NUMB (ENSCABG00000014970) #27	ENSCABG00000014967 #28
Emydidae	ANCESTRAL SPECIES	2	ENSGT00940000157547	ENSGT00520000055955	ENSGT00940000164487	ENSGT00940000154818.a.b.ab	ENSGT00830000128402	ENSGT00940000161067.z #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00940000164083	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a.l.a #34	ENSGT00940000179287	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00390000016216	ENSGT00950000183075.a.a.a.b	ENSGT00940000163655	ENSGT00940000160367	ENSGT00960000187715	ENSGT00940000164449
Three-toed box turtle	MODERN SPECIES	40	ENSTMTG00000009103	COX16 (ENSTMTG00000009121)	ENSTMTG00000009136	ENSTMTG00000009174	SYNJ2BP (ENSTMTG00000009186)	ADAM20 (ENSTMTG00000009196) #12	MED6 (ENSTMTG00000009202) #13	TTC9 (ENSTMTG00000009211) #14	MAP3K9 (ENSTMTG00000009242) #15	PCNX1 (ENSTMTG00000009484) #16	SIPA1L1 (ENSTMTG00000009554) #17	RGS6 (ENSTMTG00000009656) #18	DPF3 (ENSTMTG00000009794) #19	ENSTMTG00000010028	ZFYVE1 (ENSTMTG00000010044) #21	RBM25 (ENSTMTG00000010060) #22	PSEN1 (ENSTMTG00000010092) #23	ENSTMTG00000010104	PAPLN (ENSTMTG00000010125) #26	NUMB (ENSTMTG00000010179) #27	RIOX1 (ENSTMTG00000010216)	ENSTMTG00000010229 #28	ENSTMTG00000010293 #34	ENSTMTG00000010317 #34	ENSTMTG00000010327 #34	ENSTMTG00000010349 #34	ENSTMTG00000010356	MIDEAS (ENSTMTG00000010372) #37	PTGR2 (ENSTMTG00000010378)	TMEM62 (ENSTMTG00000010400)	UBR1 (ENSTMTG00000010577)
painted turtle	MODERN SPECIES	729	ENSCPBG00000011145	ENSCPBG00000011141	ENSCPBG00000011138	ENSCPBG00000011130	ENSCPBG00000011126	ENSCPBG00000011123	ENSCPBG00000011110	ENSCPBG00000011106	EHD4 (ENSCPBG00000011098)	ENSCPBG00000011089	ENSCPBG00000011085	RGS6 (ENSCPBG00000011080) #18	DPF3 (ENSCPBG00000011073) #19	ENSCPBG00000011069	ZFYVE1 (ENSCPBG00000011064) #21	RBM25 (ENSCPBG00000011025) #22	PSEN1 (ENSCPBG00000011020) #23	PAPLN (ENSCPBG00000011002) #26	NUMB (ENSCPBG00000010991) #27	RIOX1 (ENSCPBG00000010987)	HEATR4 (ENSCPBG00000010981) #28	ENSCPBG00000010835 #34
Lepidosauria	ANCESTRAL SPECIES	10	ENSGT00390000018436.a.a.d.b	ENSGT00940000157547	ENSGT00520000055955	ENSGT00940000164487	ENSGT00830000128402	ENSGT00940000161067.z #12	ENSGT00390000017666 #13	ENSGT00940000161472.g.a #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00940000164083	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000166770	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a
tuatara	DUPLICATION
tuatara	MODERN SPECIES	1270											SIPA1L1 (ENSSPUG00000000779) #17	RGS6 (ENSSPUG00000000815) #18	DPF3 (ENSSPUG00000000875) #19	ENSSPUG00000000923	ZFYVE1 (ENSSPUG00000000928) #21	ENSSPUG00000000970 #22	ENSSPUG00000000999 #22	PSEN1 (ENSSPUG00000001013) #23	PAPLN (ENSSPUG00000001058) #26	NUMB (ENSSPUG00000001292) #27	RIOX1 (ENSSPUG00000001385)	ENSSPUG00000001402 #28	ENSSPUG00000001440 #34	ENSSPUG00000001466	ENSSPUG00000001483	ENSSPUG00000001493	ENSSPUG00000001718	ENSSPUG00000001741	TMEM62 (ENSSPUG00000001783)	UBR1 (ENSSPUG00000001804)	ENSSPUG00000001868
tuatara	MODERN SPECIES	1270										SIPA1L1 (ENSSPUG00000000779) #17	RGS6 (ENSSPUG00000000815) #18	DPF3 (ENSSPUG00000000875) #19	ENSSPUG00000000923	ZFYVE1 (ENSSPUG00000000928) #21	ENSSPUG00000000970 #22	ENSSPUG00000000999 #22	PSEN1 (ENSSPUG00000001013) #23	PAPLN (ENSSPUG00000001058) #26	NUMB (ENSSPUG00000001292) #27	RIOX1 (ENSSPUG00000001385)	ENSSPUG00000001402 #28	ENSSPUG00000001440 #34	ENSSPUG00000001466	ENSSPUG00000001483	ENSSPUG00000001493	ENSSPUG00000001718	ENSSPUG00000001741	TMEM62 (ENSSPUG00000001783)	UBR1 (ENSSPUG00000001804)	ENSSPUG00000001868	TTBK2 (ENSSPUG00000001877)
Episquamata	ANCESTRAL SPECIES		ENSGT00520000055955	ENSGT00940000164487	ENSGT00830000128402	ENSGT00940000161067.z.b.a.a.a.b #12	ENSGT00940000161067.z.b.a.a.a.a #12	ENSGT00940000161067.z.a #12	ENSGT00390000017666 #13	ENSGT00940000161472.g.a #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00940000164083	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000166770	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a #34	ENSGT00390000016904 #35	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00390000016216	ENSGT00950000183075.a.a.a.b	ENSGT00940000163655	ENSGT00940000160367	ENSGT00940000173951
Toxicofera	ANCESTRAL SPECIES	5	ENSGT00520000055955	ENSGT00940000164487	ENSGT00830000128402	ENSGT00940000161067.z.b.a.a.a.b #12	ENSGT00940000161067.z.b.a.a.a.a #12	ENSGT00940000161067.z.a #12	ENSGT00390000017666 #13	ENSGT00940000161472.g.a #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00940000164083	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00990000210315	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a #34	ENSGT00390000016904 #35	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00390000016216	ENSGT00950000183075.a.a.a.b	ENSGT00940000163655	ENSGT00940000160367	ENSGT00940000173951
Elapidae	ANCESTRAL SPECIES	3	ENSGT00940000164487	ENSGT00830000128402	ENSGT00940000161067.z.b.a.a.a.a.c.a.a #12	ENSGT00940000161067.z.b.a.a.a.a.d #12	ENSGT00940000161067.z.b.a.a.a.a.c.a.b #12	ENSGT00940000161067.z.a #12	ENSGT00390000017666 #13	ENSGT00940000161472.g.a #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00940000164083	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a #34	ENSGT00390000016904 #35	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00390000016216	ENSGT00950000183075.a.a.a.b	ENSGT00940000163655	ENSGT00940000160367	ENSGT00940000173951	ENSGT00960000187715
Indian cobra	MODERN SPECIES		SYNJ2BP (ENSNNAG00000013127)	ENSNNAG00000013156 #12	ENSNNAG00000013179 #12	ENSNNAG00000013260 #12	ENSNNAG00000013286 #12	MED6 (ENSNNAG00000013449) #13	ENSNNAG00000013468 #12	TTC9 (ENSNNAG00000013483) #14	MAP3K9 (ENSNNAG00000013526) #15	PCNX1 (ENSNNAG00000013956) #16	SIPA1L1 (ENSNNAG00000014046) #17	RGS6 (ENSNNAG00000014110) #18	DPF3 (ENSNNAG00000014287) #19	ENSNNAG00000014329	ZFYVE1 (ENSNNAG00000014362) #21	RBM25 (ENSNNAG00000014412) #22	PSEN1 (ENSNNAG00000014429) #23	PAPLN (ENSNNAG00000014448) #26	NUMB (ENSNNAG00000014525) #27	RIOX1 (ENSNNAG00000014569)	ENSNNAG00000014574 #34	ENSNNAG00000014582 #34	DNAL1 (ENSNNAG00000014590) #35	MIDEAS (ENSNNAG00000014605) #37	PTGR2 (ENSNNAG00000014659)	TMEM62 (ENSNNAG00000014695)	UBR1 (ENSNNAG00000014974)	ENSNNAG00000016967	TTBK2 (ENSNNAG00000016988)	ENSNNAG00000017003	ENSNNAG00000017020
Elapidae_a	ANCESTRAL SPECIES	4	ENSGT00940000164487	ENSGT00830000128402	ENSGT00940000161067.z.b.a.a.a.a.c.a.a #12	ENSGT00940000161067.z.b.a.a.a.a.d #12	ENSGT00940000161067.z.b.a.a.a.a.c.a.b #12	ENSGT00940000161067.z.a #12	ENSGT00390000017666 #13	ENSGT00940000161472.g.a #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00940000164083	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a #34	ENSGT00390000016904 #35	ENSGT00940000179287	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00390000016216	ENSGT00950000183075.a.a.a.b	ENSGT00940000163655	ENSGT00940000160367	ENSGT00940000173951
Blue-lipped sea krait	DUPLICATION
Blue-lipped sea krait	MODERN SPECIES	8767											FAM83E (ENSLLTG00000010638)	ENSLLTG00000010656	ENSLLTG00000010682	ZFYVE1 (ENSLLTG00000010719) #21	ENSLLTG00000010759 #22	ENSLLTG00000010773 #22
Blue-lipped sea krait	MODERN SPECIES	8767												FAM83E (ENSLLTG00000010638)	ENSLLTG00000010656	ENSLLTG00000010682	ZFYVE1 (ENSLLTG00000010719) #21	ENSLLTG00000010759 #22	ENSLLTG00000010773 #22
Acanthophiinae	ANCESTRAL SPECIES	6	ENSGT00520000055955	ENSGT00940000164487	ENSGT00830000128402	ENSGT00940000161067.z.b.a.a.a.a.c.a.a #12	ENSGT00940000161067.z.b.a.a.a.a.d #12	ENSGT00940000161067.z.a #12	ENSGT00390000017666 #13	ENSGT00940000161472.g.a #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00940000164083	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a #34	ENSGT00940000179287	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00390000016216	ENSGT00950000183075.a.a.a.b	ENSGT00940000163655	ENSGT00940000160367	ENSGT00940000173951	ENSGT00960000187715
Mainland tiger snake	DUPLICATION
Mainland tiger snake	MODERN SPECIES	36	ENSNSUG00000017535 #12	ENSNSUG00000017534 #12	ENSNSUG00000017533 #12	ENSNSUG00000017532 #12	ENSNSUG00000017531 #14	ENSNSUG00000017530 #13	ENSNSUG00000017529 #14	MAP3K9 (ENSNSUG00000017498) #15	PCNX1 (ENSNSUG00000017496) #16	SIPA1L1 (ENSNSUG00000017494) #17	RGS6 (ENSNSUG00000017433) #18	DPF3 (ENSNSUG00000017432) #19	ENSNSUG00000017431	ZFYVE1 (ENSNSUG00000017430) #21	ENSNSUG00000017427 #22	ENSNSUG00000017425 #22	PSEN1 (ENSNSUG00000017420) #23	PAPLN (ENSNSUG00000017412) #26	NUMB (ENSNSUG00000017409) #27	RIOX1 (ENSNSUG00000017408)	ENSNSUG00000017406 #28	ENSNSUG00000017402 #34	ENSNSUG00000017392 #34	ENSNSUG00000017391	MIDEAS (ENSNSUG00000017390) #37	PTGR2 (ENSNSUG00000017389)	TMEM62 (ENSNSUG00000017339)	ENSNSUG00000017338	ENSNSUG00000017337	ENSNSUG00000017336	TTBK2 (ENSNSUG00000017335)
Mainland tiger snake	MODERN SPECIES	36	SYNJ2BP (ENSNSUG00000017536)	ENSNSUG00000017535 #12	ENSNSUG00000017534 #12	ENSNSUG00000017533 #12	ENSNSUG00000017532 #12	ENSNSUG00000017531 #14	ENSNSUG00000017530 #13	ENSNSUG00000017529 #14	MAP3K9 (ENSNSUG00000017498) #15	PCNX1 (ENSNSUG00000017496) #16	SIPA1L1 (ENSNSUG00000017494) #17	RGS6 (ENSNSUG00000017433) #18	DPF3 (ENSNSUG00000017432) #19	ENSNSUG00000017431	ZFYVE1 (ENSNSUG00000017430) #21	ENSNSUG00000017427 #22	ENSNSUG00000017425 #22	PSEN1 (ENSNSUG00000017420) #23	PAPLN (ENSNSUG00000017412) #26	NUMB (ENSNSUG00000017409) #27	RIOX1 (ENSNSUG00000017408)	ENSNSUG00000017406 #28	ENSNSUG00000017402 #34	ENSNSUG00000017392 #34	ENSNSUG00000017391	MIDEAS (ENSNSUG00000017390) #37	PTGR2 (ENSNSUG00000017389)	TMEM62 (ENSNSUG00000017339)	ENSNSUG00000017338	ENSNSUG00000017337	ENSNSUG00000017336
Eastern brown snake	DUPLICATION
Eastern brown snake	MODERN SPECIES	1	SYNJ2BP (ENSPTXG00000002782)	ENSPTXG00000002783 #12	ENSPTXG00000002785 #12	ENSPTXG00000002787 #12	ENSPTXG00000002788 #12	MED6 (ENSPTXG00000002790) #13	TTC9 (ENSPTXG00000002792) #14	MAP3K9 (ENSPTXG00000002795) #15	PCNX1 (ENSPTXG00000002910) #16	SIPA1L1 (ENSPTXG00000002930) #17	ENSPTXG00000002932	RGS6 (ENSPTXG00000002937) #18	DPF3 (ENSPTXG00000002942) #19	ENSPTXG00000002944	ZFYVE1 (ENSPTXG00000002946) #21	ENSPTXG00000002948 #22	ENSPTXG00000002951 #22	PSEN1 (ENSPTXG00000002955) #23	PAPLN (ENSPTXG00000002957) #26	NUMB (ENSPTXG00000002960) #27	RIOX1 (ENSPTXG00000002961)	ENSPTXG00000002962 #28	ENSPTXG00000002963 #34	ENSPTXG00000002964 #34	ENSPTXG00000003013	MIDEAS (ENSPTXG00000003017) #37	PTGR2 (ENSPTXG00000003022)	TMEM62 (ENSPTXG00000003027)	UBR1 (ENSPTXG00000003031)	ENSPTXG00000003036	TTBK2 (ENSPTXG00000003038)
Eastern brown snake	MODERN SPECIES	1	ENSPTXG00000002783 #12	ENSPTXG00000002785 #12	ENSPTXG00000002787 #12	ENSPTXG00000002788 #12	MED6 (ENSPTXG00000002790) #13	TTC9 (ENSPTXG00000002792) #14	MAP3K9 (ENSPTXG00000002795) #15	PCNX1 (ENSPTXG00000002910) #16	SIPA1L1 (ENSPTXG00000002930) #17	ENSPTXG00000002932	RGS6 (ENSPTXG00000002937) #18	DPF3 (ENSPTXG00000002942) #19	ENSPTXG00000002944	ZFYVE1 (ENSPTXG00000002946) #21	ENSPTXG00000002948 #22	ENSPTXG00000002951 #22	PSEN1 (ENSPTXG00000002955) #23	PAPLN (ENSPTXG00000002957) #26	NUMB (ENSPTXG00000002960) #27	RIOX1 (ENSPTXG00000002961)	ENSPTXG00000002962 #28	ENSPTXG00000002963 #34	ENSPTXG00000002964 #34	ENSPTXG00000003013	MIDEAS (ENSPTXG00000003017) #37	PTGR2 (ENSPTXG00000003022)	TMEM62 (ENSPTXG00000003027)	UBR1 (ENSPTXG00000003031)	ENSPTXG00000003036	TTBK2 (ENSPTXG00000003038)	ENSPTXG00000003039
Lizard	MODERN SPECIES		PIK3C3 (ENSACAG00000013961)	MAP3K9 (ENSACAG00000004901) #15	PCNX1 (ENSACAG00000004825) #16	ENSACAG00000045066	SIPA1L1 (ENSACAG00000016500) #17	ENSACAG00000041627	RGS6 (ENSACAG00000016418) #18	DPF3 (ENSACAG00000016381) #19	ENSACAG00000037469	ENSACAG00000040003	ENSACAG00000044460	ENSACAG00000016340	ZFYVE1 (ENSACAG00000016309) #21	ENSACAG00000041623	ENSACAG00000044807	RBM25 (ENSACAG00000016239) #22	ENSACAG00000041883	PSEN1 (ENSACAG00000016176) #23	ENSACAG00000042386	PAPLN (ENSACAG00000016156) #26	NUMB (ENSACAG00000016123) #27	RIOX1 (ENSACAG00000038779)	ENSACAG00000016102 #28	ENSACAG00000016077 #34	ENSACAG00000040488	ENSACAG00000041122 #34	ENSACAG00000016048	MIDEAS (ENSACAG00000016025) #37	PTGR2 (ENSACAG00000015971)	ENSACAG00000042098	TMEM62 (ENSACAG00000015947)
Laterata	ANCESTRAL SPECIES	2	ENSGT00520000055955	ENSGT00940000164487	ENSGT00830000128402	ENSGT00940000161067.z.b.a.a.a.b #12	ENSGT00940000161067.z.b.a.a.a.a.b #12	ENSGT00940000161067.z.a #12	ENSGT00390000017666 #13	ENSGT00940000161472.g.a #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00940000164083	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000166770	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00390000000083.a	ENSGT00390000013207 #28	ENSGT01010000222336.a.a.a #34	ENSGT00390000016904 #35	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00390000016216	ENSGT00950000183075.a.a.a.b	ENSGT00940000163655	ENSGT00940000160367	ENSGT00960000187715
Argentine black and white tegu	MODERN SPECIES	3	ENSSMRG00000009772 #12	ENSSMRG00000009773 #12	ENSSMRG00000009774 #12	ENSSMRG00000009775 #12	ENSSMRG00000009776 #12	MED6 (ENSSMRG00000009777) #13	ENSSMRG00000009778	TTC9 (ENSSMRG00000009810) #14	MAP3K9 (ENSSMRG00000009818) #15	PCNX1 (ENSSMRG00000009870) #16	SIPA1L1 (ENSSMRG00000009895) #17	RGS6 (ENSSMRG00000009910) #18	DPF3 (ENSSMRG00000009927) #19	ENSSMRG00000009934	ZFYVE1 (ENSSMRG00000009939) #21	RBM25 (ENSSMRG00000009944) #22	PSEN1 (ENSSMRG00000009951) #23	PAPLN (ENSSMRG00000009970) #26	NUMB (ENSSMRG00000009974) #27	RIOX1 (ENSSMRG00000009976)	ENSSMRG00000009978 #28	ENSSMRG00000009990 #34	ENSSMRG00000010006 #34	DNAL1 (ENSSMRG00000010008) #35	MIDEAS (ENSSMRG00000010009) #37	PTGR2 (ENSSMRG00000010011)	ENSSMRG00000010014	TMEM62 (ENSSMRG00000010019)	UBR1 (ENSSMRG00000010028)	ENSSMRG00000010037	TTBK2 (ENSSMRG00000010040)
Common wall lizard	MODERN SPECIES		ENSPMRG00000005660 #12	ENSPMRG00000005657 #12	ENSPMRG00000005652 #12	ENSPMRG00000005650 #12	ENSPMRG00000005649 #12	MED6 (ENSPMRG00000005645) #13	TTC9 (ENSPMRG00000005638) #14	ENSPMRG00000005631 #15	PCNX1 (ENSPMRG00000004882) #16	SIPA1L1 (ENSPMRG00000004811) #17	RGS6 (ENSPMRG00000004573) #18	ENSPMRG00000004528	DPF3 (ENSPMRG00000004520) #19	ENSPMRG00000004485	ZFYVE1 (ENSPMRG00000004474) #21	RBM25 (ENSPMRG00000004467) #22	ENSPMRG00000004460	PSEN1 (ENSPMRG00000004453) #23	PAPLN (ENSPMRG00000004435) #26	ENSPMRG00000004407 #26	ENSPMRG00000004402 #27	ENSPMRG00000004399 #27	RIOX1 (ENSPMRG00000004393)	ENSPMRG00000004378 #28	ENSPMRG00000004375 #34	ENSPMRG00000004372 #34	ENSPMRG00000004370	MIDEAS (ENSPMRG00000004340) #37	UBR1 (ENSPMRG00000003800)	ENSPMRG00000003748	TTBK2 (ENSPMRG00000003706)
Anura	ANCESTRAL SPECIES	135	ENSGT00950000182808.a.a.b.a	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00520000055955	ENSGT00940000164487	ENSGT00830000128402	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00940000164083	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #26	ENSGT00940000156005 #27	ENSGT00940000164613	ENSGT00940000164449	ENSGT00940000160367	ENSGT00940000163655	ENSGT00950000183075.a.a.a.b
Frog	MODERN SPECIES	8	smoc1 (ENSXETG00000030085)	slc8a3 (ENSXETG00000002216)	cox16 (ENSXETG00000030901)	desi2l (ENSXETG00000040854)	synj2bp (ENSXETG00000033493)	ENSXETG00000049092	med6 (ENSXETG00000002222) #13	ttc9 (ENSXETG00000035296) #14	map3k9 (ENSXETG00000021811) #15	pcnx1 (ENSXETG00000021815) #16	sipa1l1 (ENSXETG00000021825) #17	rgs6 (ENSXETG00000021836) #18	dpf3 (ENSXETG00000021846) #19	dcaf4 (ENSXETG00000021849)	zfyve1 (ENSXETG00000021852) #21	rbm25 (ENSXETG00000021857) #22	psen1 (ENSXETG00000001008) #23	papln (ENSXETG00000001002) #26	numb (ENSXETG00000000991) #27	stard9 (ENSXETG00000034957)	cdan1 (ENSXETG00000000986)	ttbk2 (ENSXETG00000000979)	prph2l (ENSXETG00000000983)	ubr1 (ENSXETG00000000961)	sil1 (ENSXETG00000038263)	ptgr2 (ENSXETG00000000953)	tmem62 (ENSXETG00000000950)	mideas (ENSXETG00000000062) #37	dnal1 (ENSXETG00000000061) #35	lrrc57 (ENSXETG00000000060)	haus2 (ENSXETG00000035624)