Euarchontoglires	ANCESTRAL SPECIES	3	ENSGT00940000162712 #10	ENSGT00940000161933 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT01100000264921	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00910000147388	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000000083.a #27	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #35	ENSGT00940000158098 #36	ENSGT00940000159998 #37	ENSGT00390000015152
Primates	ANCESTRAL SPECIES	2	ENSGT00940000162712 #10	ENSGT00940000161933 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT01100000264921	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00910000147388	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000000083.a #27	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #35	ENSGT00940000158098 #36	ENSGT00940000159998 #37	ENSGT00390000015152
Haplorrhini	ANCESTRAL SPECIES	12	ENSGT00940000162712 #10	ENSGT00940000161933 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT01100000264921	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00910000147388	ENSGT00390000009546.a #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000000083.a #27	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #35	ENSGT00940000158098 #36	ENSGT00940000159998 #37	ENSGT00390000015152
Simiiformes	ANCESTRAL SPECIES	2	ENSGT00940000162712 #10	ENSGT00940000161933 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT01100000264921	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00910000147388	ENSGT00390000009546.a #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000000083.a #27	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #35	ENSGT00940000158098 #36	ENSGT00940000159998 #37	ENSGT00390000015152
Catarrhini	ANCESTRAL SPECIES	9	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT01100000264921	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000153222.a.b.b.b.b.k.b	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00860000135749	ENSGT00910000147388	ENSGT00390000009546.a #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000000083.a #27	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00900000143785 #34	ENSGT00940000157459 #33	ENSGT00940000156793 #35	ENSGT00940000158098 #36	ENSGT00940000159998 #37
Hominoidea	ANCESTRAL SPECIES	12	ENSGT00520000055955 #8	ENSGT00830000128402 #9	ENSGT00940000162712 #10	ENSGT00940000161933 #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000153222.a.b.b.b.b.k.b	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546.a #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000000083.a #27	ENSGT01010000222336.a.a.a.ob.a.a #28	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00900000143785 #34	ENSGT00940000157459 #33	ENSGT00940000156793 #35	ENSGT00940000158098 #36	ENSGT00940000159998 #37
Hominidae	ANCESTRAL SPECIES	14	ENSGT00520000055955 #8	ENSGT00830000128402 #9	ENSGT00940000162712.e.a #10	ENSGT00940000161933.z #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000153222.a.b.b.b.b.k.b	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546.a #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000013207 #26	ENSGT00390000000083.a #27	ENSGT01010000222336.a.a.a.ob.a.a #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00900000143785 #34	ENSGT00940000156793 #35	ENSGT00940000158098 #36	ENSGT00940000159998 #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	12	ENSGT00830000128402 #9	ENSGT00940000162712.e.a #10	ENSGT00940000161933.z #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000153222.a.b.b.b.b.k.b	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000011943.b	ENSGT00390000009546.a #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000000083.a #27	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a.i #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00900000143785 #34	ENSGT00940000156793 #35	ENSGT00940000158098 #36	ENSGT00940000159998 #37
Homo/Pan group	ANCESTRAL SPECIES	11	ENSGT00830000128402 #9	ENSGT00940000162712.e.a #10	ENSGT00940000161933.z #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000153222.a.b.b.b.b.k.b	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000011943.b	ENSGT00390000009546.a #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000000083.a #27	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a.i #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00900000143785 #34	ENSGT00940000156793 #35	ENSGT00940000158098 #36	ENSGT00940000159998 #37
Pan	ANCESTRAL SPECIES	8	ENSGT00830000128402 #9	ENSGT00940000162712.e.a #10	ENSGT00940000161933.z #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000153222.a.b.b.b.b.k.b	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000011943.b	ENSGT00390000009546.a #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000013207 #26	ENSGT00390000000083.a #27	ENSGT01010000222336.a.a.a.ob.a.a.i #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00900000143785 #34	ENSGT00940000156793 #35	ENSGT00940000158098 #36	ENSGT00940000159998 #37
Bonobo	MODERN SPECIES	5	ENSPPAG00000028140 #7	COX16 (ENSPPAG00000038084) #8	SYNJ2BP (ENSPPAG00000001578) #9	ADAM21 (ENSPPAG00000029592) #10	ENSPPAG00000043925 #11	ADAM20 (ENSPPAG00000015111) #12	MED6 (ENSPPAG00000042102) #13	TTC9 (ENSPPAG00000035446) #14	MAP3K9 (ENSPPAG00000027733) #15	PCNX1 (ENSPPAG00000038593) #16	SIPA1L1 (ENSPPAG00000000429) #17	ENSPPAG00000022724 #18	DPF3 (ENSPPAG00000037348) #19	DCAF4 (ENSPPAG00000029989) #20	ZFYVE1 (ENSPPAG00000043760) #21	RBM25 (ENSPPAG00000039402) #22	PSEN1 (ENSPPAG00000038712) #23	PAPLN (ENSPPAG00000042474) #24	NUMB (ENSPPAG00000022878) #25	HEATR4 (ENSPPAG00000018626) #26	RIOX1 (ENSPPAG00000021453) #27	ACOT2 (ENSPPAG00000003795) #28	ACOT4 (ENSPPAG00000037580) #29	ENSPPAG00000012443 #30	DNAL1 (ENSPPAG00000038940) #31	PNMA1 (ENSPPAG00000016978) #32	MIDEAS (ENSPPAG00000043022) #33	ENSPPAG00000010721 #34	PTGR2 (ENSPPAG00000043789) #35	ZNF410 (ENSPPAG00000038897) #36	FAM161B (ENSPPAG00000036655) #37
Chimpanzee	MODERN SPECIES	5	SYNJ2BP (ENSPTRG00000034394) #9	ENSPTRG00000048603 ##10	ENSPTRG00000051900 #11	ADAM20 (ENSPTRG00000030707) #12	MED6 (ENSPTRG00000006496) #13	TTC9 (ENSPTRG00000039204) #14	MAP3K9 (ENSPTRG00000006499) #15	PCNX1 (ENSPTRG00000006500) #16	ENSPTRG00000040068	SIPA1L1 (ENSPTRG00000023075) #17	RGS6 (ENSPTRG00000006504) #18	DPF3 (ENSPTRG00000030704) #19	DCAF4 (ENSPTRG00000006507) #20	ENSPTRG00000043558	ZFYVE1 (ENSPTRG00000006508) #21	RBM25 (ENSPTRG00000006509) #22	PSEN1 (ENSPTRG00000006510) #23	PAPLN (ENSPTRG00000006512) #24	NUMB (ENSPTRG00000006513) #25	ENSPTRG00000051883	HEATR4 (ENSPTRG00000006515) #26	ACOT2 (ENSPTRG00000006516) #28	ACOT4 (ENSPTRG00000006518) #29	ACOT6 (ENSPTRG00000030702) #30	DNAL1 (ENSPTRG00000006520) #31	PNMA1 (ENSPTRG00000006521) #32	MIDEAS (ENSPTRG00000006523) #33	PTGR2 (ENSPTRG00000006524) #35	ZNF410 (ENSPTRG00000006525) #36	FAM161B (ENSPTRG00000006526) #37	COQ6 (ENSPTRG00000006527)
Human	MODERN SPECIES	5	SLC8A3 (ENSG00000100678)	COX16 (ENSG00000133983) #8	SYNJ2BP-COX16 (ENSG00000258644)	SYNJ2BP (ENSG00000213463) #9	ADAM21 (ENSG00000139985) #10	ADAM20 (ENSG00000134007) #12	MED6 (ENSG00000133997) #13	TTC9 (ENSG00000133985) #14	MAP3K9 (ENSG00000006432) #15	PCNX1 (ENSG00000100731) #16	SIPA1L1 (ENSG00000197555) #17	RGS6 (ENSG00000182732) #18	DPF3 (ENSG00000205683) #19	DCAF4 (ENSG00000119599) #20	ZFYVE1 (ENSG00000165861) #21	RBM25 (ENSG00000119707) #22	PSEN1 (ENSG00000080815) #23	PAPLN (ENSG00000100767) #24	NUMB (ENSG00000133961) #25	HEATR4 (ENSG00000187105) #26	RIOX1 (ENSG00000170468) #27	ACOT1 (ENSG00000184227) ##30	ACOT2 (ENSG00000119673) #28	ACOT4 (ENSG00000177465) #29	ACOT6 (ENSG00000205669) #30	DNAL1 (ENSG00000119661) #31	PNMA1 (ENSG00000176903) #32	MIDEAS (ENSG00000156030) #33	PTGR2 (ENSG00000140043) #35	ZNF410 (ENSG00000119725) #36	FAM161B (ENSG00000156050) #37
Gorilla	MODERN SPECIES	5	SYNJ2BP (ENSGGOG00000037626) #9	ADAM21 (ENSGGOG00000023328) #10	ENSGGOG00000024177 #11	ADAM20 (ENSGGOG00000023185) #12	MED6 (ENSGGOG00000006341) #13	TTC9 (ENSGGOG00000003504) #14	MAP3K9 (ENSGGOG00000010418) #15	PCNX1 (ENSGGOG00000006196) #16	ENSGGOG00000038964	SIPA1L1 (ENSGGOG00000013648) #17	ENSGGOG00000007256 #18	ENSGGOG00000009139 #19	ENSGGOG00000022649	DCAF4 (ENSGGOG00000003815) #20	ZFYVE1 (ENSGGOG00000005166) #21	RBM25 (ENSGGOG00000002415) #22	PSEN1 (ENSGGOG00000002132) #23	PAPLN (ENSGGOG00000002134) #24	NUMB (ENSGGOG00000002141) #25	HEATR4 (ENSGGOG00000003658) #26	ACOT2 (ENSGGOG00000015023) #28	ACOT4 (ENSGGOG00000001567) #29	ACOT6 (ENSGGOG00000014111) #30	DNAL1 (ENSGGOG00000015989) #31	PNMA1 (ENSGGOG00000006159) #32	MIDEAS (ENSGGOG00000006163) #33	ENSGGOG00000040793 #34	PTGR2 (ENSGGOG00000015300) #35	ZNF410 (ENSGGOG00000000715) #36	FAM161B (ENSGGOG00000014345) #37	COQ6 (ENSGGOG00000014355)
Orangutan	MODERN SPECIES	5	ENSPPYG00000005952 #7	ENSPPYG00000039435	COX16 (ENSPPYG00000005951) #8	SYNJ2BP (ENSPPYG00000029433) #9	ADAM20 (ENSPPYG00000005953) #12	MED6 (ENSPPYG00000005954) #13	TTC9 (ENSPPYG00000030644) #14	MAP3K9 (ENSPPYG00000005956) #15	PCNX1 (ENSPPYG00000005957) #16	SIPA1L1 (ENSPPYG00000005960) #17	ENSPPYG00000030046	RGS6 (ENSPPYG00000005962) #18	ENSPPYG00000005963 #19	DCAF4 (ENSPPYG00000005965) #20	ZFYVE1 (ENSPPYG00000005966) #21	RBM25 (ENSPPYG00000037322) #22	PSEN1 (ENSPPYG00000005967) #23	PAPLN (ENSPPYG00000005968) #24	NUMB (ENSPPYG00000041351) #25	HEATR4 (ENSPPYG00000005970) #26	RIOX1 (ENSPPYG00000032048) #27	ENSPPYG00000033025 #28	ENSPPYG00000005971 #28	ACOT4 (ENSPPYG00000029617) #29	ENSPPYG00000029646 #30	DNAL1 (ENSPPYG00000005973) #31	PNMA1 (ENSPPYG00000005974) #32	MIDEAS (ENSPPYG00000005975) #33	PTGR2 (ENSPPYG00000005976) #35	ZNF410 (ENSPPYG00000037257) #36	FAM161B (ENSPPYG00000038071) #37
Gibbon	MODERN SPECIES	10	SYNJ2BP (ENSNLEG00000001800) #9	ADAM20 (ENSNLEG00000001815) #12	MED6 (ENSNLEG00000036318) #13	TTC9 (ENSNLEG00000001880) #14	MAP3K9 (ENSNLEG00000001891) #15	PCNX1 (ENSNLEG00000001896) #16	ENSNLEG00000036319	SIPA1L1 (ENSNLEG00000002117) #17	ENSNLEG00000002297 #18	ENSNLEG00000002403 #19	ENSNLEG00000035680	ENSNLEG00000035129	ENSNLEG00000028662	DCAF4 (ENSNLEG00000002449) #20	ZFYVE1 (ENSNLEG00000002632) #21	RBM25 (ENSNLEG00000002701) #22	PSEN1 (ENSNLEG00000002855) #23	PAPLN (ENSNLEG00000002925) #24	NUMB (ENSNLEG00000002944) #25	HEATR4 (ENSNLEG00000003060) #26	RIOX1 (ENSNLEG00000003130) #27	ENSNLEG00000027838 #28	DTD2 (ENSNLEG00000034317)	NUBPL (ENSNLEG00000003141)	ENSNLEG00000028683	ENSNLEG00000003168	AKAP6 (ENSNLEG00000003187)	ENSNLEG00000032055	ENSNLEG00000032145	EGLN3 (ENSNLEG00000003247)	SPTSSA (ENSNLEG00000029839)
Cercopithecidae	ANCESTRAL SPECIES	7	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT01100000264921	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000153222.a.b.b.b.b.k.b	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00860000135749	ENSGT00910000147388	ENSGT00390000009546.a #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000000083.a #27	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00900000143785 #34	ENSGT00940000157459 #33	ENSGT00940000156793 #35	ENSGT00940000158098 #36	ENSGT00940000159998 #37
Cercopithecinae	ANCESTRAL SPECIES	2	ENSGT00940000161933.`b #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT01100000264921	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000153222.a.b.b.b.b.k.b	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00860000135749	ENSGT00390000009546.a #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000000083.a #27	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00900000143785 #34	ENSGT00940000157459 #33	ENSGT00940000156793 #35	ENSGT00940000158098 #36	ENSGT00940000159998 #37
Cercopithecinae_a	ANCESTRAL SPECIES	1	ENSGT00830000128402 #9	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000153222.a.b.b.b.b.k.b	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00860000135749	ENSGT00390000009546.a #20	ENSGT00390000016097 #21	ENSGT00940000153052.c.b.a.a.a.a.a.a.b.a	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000000083.a #27	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00900000143785 #34	ENSGT00940000157459 #33	ENSGT00940000156793 #35	ENSGT00940000158098 #36	ENSGT00940000159998 #37
Macaca	ANCESTRAL SPECIES	1	ENSGT00940000162712.c.a #10	ENSGT00940000161933.`b.a.a #11	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000153222.a.b.b.b.b.k.b	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00860000135749	ENSGT00390000009546.a #20	ENSGT00390000016097 #21	ENSGT00940000153052.c.b.a.a.a.a.a.a.b.a	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000000083.a #27	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #35	ENSGT00940000158098 #36	ENSGT00940000159998 #37	ENSGT00390000015152
Pig-tailed macaque	MODERN SPECIES	214			ENSMNEG00000037557 #11	MED6 (ENSMNEG00000005643) #13	TTC9 (ENSMNEG00000031012) #14	MAP3K9 (ENSMNEG00000037894) #15	PCNX1 (ENSMNEG00000017837) #16	ENSMNEG00000033356	SIPA1L1 (ENSMNEG00000039216) #17	ENSMNEG00000033671	RGS6 (ENSMNEG00000030946) #18	ENSMNEG00000034035	DPF3 (ENSMNEG00000030722) #19	DCAF4 (ENSMNEG00000036053) #20	ZFYVE1 (ENSMNEG00000029231) #21	RBM25 (ENSMNEG00000032922) #22	PSEN1 (ENSMNEG00000037289) #23	PAPLN (ENSMNEG00000027160) #24	NUMB (ENSMNEG00000034179) #25	RIOX1 (ENSMNEG00000021421) #27	HEATR4 (ENSMNEG00000032384) #26	ENSMNEG00000033296 #28	ACOT4 (ENSMNEG00000028485) #29	ENSMNEG00000005067 #30	DNAL1 (ENSMNEG00000034870) #31
Macaca_a	ANCESTRAL SPECIES	2	ENSGT00940000162712.d #10	ENSGT00940000161933.`b.a.a #11	ENSGT00940000161933.`b.a.b.a #11	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00860000135749	ENSGT00390000009546.a #20	ENSGT00390000016097 #21	ENSGT00940000153052.c.b.a.a.a.a.a.a.b.a	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000000083.a #27	ENSGT00390000013207 #26	ENSGT00940000153052.c.b.a.a.a.a.a.b	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #35	ENSGT00940000158098 #36	ENSGT00940000159998 #37	ENSGT00390000015152	ENSGT01100000263540.A.b
Rhesus	MODERN SPECIES	17	ENSMMUG00000059282 #11	ENSMMUG00000052580 #11	ADAM20 (ENSMMUG00000000202) #12	MED6 (ENSMMUG00000005781) #13	TTC9 (ENSMMUG00000056365) #14	ENSMMUG00000051671	MAP3K9 (ENSMMUG00000005786) #15	PCNX1 (ENSMMUG00000019470) #16	SIPA1L1 (ENSMMUG00000020067) #17	RGS6 (ENSMMUG00000001820) #18	DPF3 (ENSMMUG00000016351) #19	ENSMMUG00000063538	DCAF4 (ENSMMUG00000003625) #20	ZFYVE1 (ENSMMUG00000005140) #21	ENSMMUG00000056507	RBM25 (ENSMMUG00000002332) #22	PSEN1 (ENSMMUG00000010173) #23	PAPLN (ENSMMUG00000020195) #24	NUMB (ENSMMUG00000020196) #25	RIOX1 (ENSMMUG00000000315) #27	ENSMMUG00000053481	ENSMMUG00000049894	ENSMMUG00000006855 #30	DNAL1 (ENSMMUG00000004910) #31	PNMA1 (ENSMMUG00000004911) #32	MIDEAS (ENSMMUG00000004913) #33	PTGR2 (ENSMMUG00000018146) #35	ZNF410 (ENSMMUG00000011144) #36	FAM161B (ENSMMUG00000029273) #37	COQ6 (ENSMMUG00000011148)	BBOF1 (ENSMMUG00000012683)
Crab-eating macaque	MODERN SPECIES	17	ENSMFAG00000023207 #11	ADAM20 (ENSMFAG00000056245) #12	MED6 (ENSMFAG00000032743) #13	TTC9 (ENSMFAG00000052601) #14	MAP3K9 (ENSMFAG00000002562) #15	PCNX1 (ENSMFAG00000033279) #16	SIPA1L1 (ENSMFAG00000038037) #17	RGS6 (ENSMFAG00000033074) #18	DPF3 (ENSMFAG00000033308) #19	ENSMFAG00000057362	DCAF4 (ENSMFAG00000037267) #20	ENSMFAG00000064227	ZFYVE1 (ENSMFAG00000037270) #21	ENSMFAG00000047560	ENSMFAG00000063025	RBM25 (ENSMFAG00000040040) #22	PSEN1 (ENSMFAG00000000113) #23	PAPLN (ENSMFAG00000021512) #24	NUMB (ENSMFAG00000046300) #25	HEATR4 (ENSMFAG00000043816) #26	ENSMFAG00000048994	ENSMFAG00000049913	ENSMFAG00000031617 #30	DNAL1 (ENSMFAG00000035392) #31	PNMA1 (ENSMFAG00000007972) #32	ENSMFAG00000063574	MIDEAS (ENSMFAG00000034140) #33	PTGR2 (ENSMFAG00000045904) #35	ZNF410 (ENSMFAG00000000428) #36	FAM161B (ENSMFAG00000038086) #37	COQ6 (ENSMFAG00000046089)
Cercopithecinae_b	ANCESTRAL SPECIES	8	ENSGT00830000128402 #9	ENSGT00940000161933.`b.a.a #11	ENSGT00940000161933.`b.b #11	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000153222.a.b.b.b.b.k.b	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546.a #20	ENSGT00390000016097 #21	ENSGT00940000153052.c.b.a.a.a.a.a.a.b.a	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000013207 #26	ENSGT00390000000083.a #27	ENSGT01010000222336.a.a.a.ob.a.a #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00900000143785 #34	ENSGT00940000157459 #33	ENSGT00940000156793 #35	ENSGT00940000158098 #36	ENSGT00940000159998 #37
Olive baboon	MODERN SPECIES	17	SYNJ2BP (ENSPANG00000010342) #9	ADAM20 (ENSPANG00000048884) #12	ENSPANG00000039971	MED6 (ENSPANG00000036307) #13	TTC9 (ENSPANG00000017558) #14	MAP3K9 (ENSPANG00000024112) #15	PCNX1 (ENSPANG00000018659) #16	ENSPANG00000049489	SIPA1L1 (ENSPANG00000010341) #17	ENSPANG00000043598	RGS6 (ENSPANG00000006945) #18	DPF3 (ENSPANG00000018213) #19	DCAF4 (ENSPANG00000016403) #20	ENSPANG00000000607	ZFYVE1 (ENSPANG00000009729) #21	RBM25 (ENSPANG00000018212) #22	PSEN1 (ENSPANG00000006859) #23	PAPLN (ENSPANG00000009728) #24	NUMB (ENSPANG00000026174) #25	ENSPANG00000026271 #28	ENSPANG00000031897 #30	DNAL1 (ENSPANG00000015764) #31	PNMA1 (ENSPANG00000003663) #32	ENSPANG00000015765	ENSPANG00000029412	PTGR2 (ENSPANG00000015767) #35	ZNF410 (ENSPANG00000013439) #36	FAM161B (ENSPANG00000018775) #37	COQ6 (ENSPANG00000022438)	ENTPD5 (ENSPANG00000024304)	BBOF1 (ENSPANG00000009281)
Cercopithecinae_d	ANCESTRAL SPECIES	11			ENSGT00940000161933.`b.b #11	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000153222.a.b.b.b.b.k.b	ENSGT00940000155944 #17	ENSGT00950000183779	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546.a #20	ENSGT00390000016097 #21	ENSGT00940000153052.c.b.a.a.a.a.a.a.b.a	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00900000143785 #34	ENSGT00940000157459 #33	ENSGT00940000156793 #35	ENSGT00940000158098 #36	ENSGT00940000159998 #37	ENSGT00390000015152
Drill	MODERN SPECIES	867				ENSMLEG00000036404 #11	MED6 (ENSMLEG00000042671) #13	ENSMLEG00000004124	MAP3K9 (ENSMLEG00000011182) #15	PCNX1 (ENSMLEG00000041683) #16	ENSMLEG00000034079	SIPA1L1 (ENSMLEG00000029565) #17	ENSMLEG00000029596	RGS6 (ENSMLEG00000032736) #18	DPF3 (ENSMLEG00000036959) #19	DCAF4 (ENSMLEG00000040126) #20	ZFYVE1 (ENSMLEG00000035385) #21	RBM25 (ENSMLEG00000035157) #22	PSEN1 (ENSMLEG00000033881) #23	PAPLN (ENSMLEG00000037242) #24	NUMB (ENSMLEG00000023581) #25	HEATR4 (ENSMLEG00000044156) #26	ENSMLEG00000036461 #28	ACOT4 (ENSMLEG00000029946) #29	ENSMLEG00000041143 #30	DNAL1 (ENSMLEG00000032796) #31
Sooty mangabey	MODERN SPECIES	303			ENSCATG00000017347 #11	MED6 (ENSCATG00000033151) #13	TTC9 (ENSCATG00000038839) #14	MAP3K9 (ENSCATG00000030062) #15	PCNX1 (ENSCATG00000021420) #16	SIPA1L1 (ENSCATG00000036653) #17	ENSCATG00000029544	RGS6 (ENSCATG00000040492) #18	DPF3 (ENSCATG00000009867) #19	DCAF4 (ENSCATG00000020304) #20	ENSCATG00000032385	ZFYVE1 (ENSCATG00000037612) #21	ENSCATG00000042248	RBM25 (ENSCATG00000039651) #22	PSEN1 (ENSCATG00000038778) #23	PAPLN (ENSCATG00000042093) #24	NUMB (ENSCATG00000041867) #25	HEATR4 (ENSCATG00000044114) #26	RIOX1 (ENSCATG00000021107) #27	ENSCATG00000029897 #28	ENSCATG00000036501
Vervet Monkey	MODERN SPECIES	16	COX16 (ENSCSAG00000013011) #8	SYNJ2BP (ENSCSAG00000012994) #9	ADAM20 (ENSCSAG00000012987) #12	MED6 (ENSCSAG00000012980) #13	TTC9 (ENSCSAG00000012967) #14	ENSCSAG00000012963	MAP3K9 (ENSCSAG00000012955) #15	PCNX1 (ENSCSAG00000012945) #16	ENSCSAG00000012924	SIPA1L1 (ENSCSAG00000012918) #17	ENSCSAG00000012896	RGS6 (ENSCSAG00000012876) #18	DPF3 (ENSCSAG00000012864) #19	DCAF4 (ENSCSAG00000012844) #20	ZFYVE1 (ENSCSAG00000012822) #21	RBM25 (ENSCSAG00000012801) #22	PSEN1 (ENSCSAG00000012773) #23	PAPLN (ENSCSAG00000012756) #24	NUMB (ENSCSAG00000012724) #25	ENSCSAG00000012717 #28	ACOT4 (ENSCSAG00000012700) #29	ENSCSAG00000019571 #30	DNAL1 (ENSCSAG00000012693) #31	PNMA1 (ENSCSAG00000019572) #32	MIDEAS (ENSCSAG00000012679) #33	PTGR2 (ENSCSAG00000012670) #35	ZNF410 (ENSCSAG00000012661) #36	FAM161B (ENSCSAG00000012650) #37	COQ6 (ENSCSAG00000012631)	ENTPD5 (ENSCSAG00000012613)	BBOF1 (ENSCSAG00000012603)
Rhinopithecus	ANCESTRAL SPECIES	229	ENSGT00520000055955.f.a #8	ENSGT00830000128402 #9	ENSGT00940000162712 #10	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000153222.a.b.b.b.b.k.b	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00860000135749	ENSGT00910000147388	ENSGT00390000009546.a #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00940000153385.b.a.b.oc	ENSGT00390000013207 #26	ENSGT00390000000083.a #27	ENSGT00940000153052.c.b.a.a.a.a.a.a.b.b.b	ENSGT01010000222336.a.a.a.ob.a.a.o #28
Black snub-nosed monkey	MODERN SPECIES	713		ENSRBIG00000032130	SYNJ2BP (ENSRBIG00000034666) #9	MED6 (ENSRBIG00000015074) #13	TTC9 (ENSRBIG00000041695) #14	MAP3K9 (ENSRBIG00000031048) #15	PCNX1 (ENSRBIG00000027567) #16	ENSRBIG00000033864	SIPA1L1 (ENSRBIG00000013622) #17	RGS6 (ENSRBIG00000038422) #18	DPF3 (ENSRBIG00000021314) #19	ENSRBIG00000038609	ENSRBIG00000040543	DCAF4 (ENSRBIG00000041818) #20	ZFYVE1 (ENSRBIG00000036107) #21	RBM25 (ENSRBIG00000039904) #22	PSEN1 (ENSRBIG00000019293) #23	PAPLN (ENSRBIG00000033248) #24	NUMB (ENSRBIG00000043156) #25	ENSRBIG00000015372	HEATR4 (ENSRBIG00000041847) #26	RIOX1 (ENSRBIG00000017859) #27	ENSRBIG00000031681	ENSRBIG00000023969 #28
Golden snub-nosed monkey	MODERN SPECIES	797									RGS6 (ENSRROG00000040751) #18	DPF3 (ENSRROG00000039384) #19	ENSRROG00000045287	ENSRROG00000044529	DCAF4 (ENSRROG00000035960) #20	ZFYVE1 (ENSRROG00000037742) #21	ENSRROG00000028901	RBM25 (ENSRROG00000035556) #22	PSEN1 (ENSRROG00000023023) #23	PAPLN (ENSRROG00000032324) #24	NUMB (ENSRROG00000039499) #25	ENSRROG00000035725	HEATR4 (ENSRROG00000040469) #26	RIOX1 (ENSRROG00000010218) #27	ENSRROG00000039724	ENSRROG00000036776 #28
Platyrrhini	ANCESTRAL SPECIES	4	ENSGT00940000161933 #11	ENSGT00940000162712 #10	ENSGT00520000055955.c #8	ENSGT00830000128402 #9	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000155162.c.b	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00910000147388	ENSGT00390000009546.a #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000000083.a #27	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #35	ENSGT00940000158098 #36	ENSGT00940000159998 #37	ENSGT00390000015152
Cebidae	ANCESTRAL SPECIES	3	ENSGT00940000161933 #11	ENSGT00940000162712 #10	ENSGT00520000055955.c #8	ENSGT00830000128402 #9	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000155162.c.b	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00910000147388	ENSGT00390000009546.a #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000000083.a #27	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #35	ENSGT00940000158098 #36	ENSGT00940000159998 #37	ENSGT00390000015152
Marmoset	DUPLICATION
Marmoset	MODERN SPECIES	1	MAP3K9 (ENSCJAG00000014758) #15	ENSCJAG00000086528	ENSCJAG00000079414	PCNX1 (ENSCJAG00000014664) #16	ENSCJAG00000061408	ENSCJAG00000080004	SIPA1L1 (ENSCJAG00000014597) #17	ENSCJAG00000085303	ENSCJAG00000070816	ENSCJAG00000073976	RGS6 (ENSCJAG00000014537) #18	DPF3 (ENSCJAG00000014522) #19	ENSCJAG00000014514 #20	ZFYVE1 (ENSCJAG00000014498) #21	ENSCJAG00000077374	ENSCJAG00000014441 #22	PSEN1 (ENSCJAG00000014387) #23	PAPLN (ENSCJAG00000014352) #24	NUMB (ENSCJAG00000014264) #25	ENSCJAG00000082842	RIOX1 (ENSCJAG00000042587) #27	ENSCJAG00000009908 #26	ACOT4 (ENSCJAG00000009911) #29	ENSCJAG00000037095 #30	DNAL1 (ENSCJAG00000009922) #31	PNMA1 (ENSCJAG00000042056) #32	MIDEAS (ENSCJAG00000009935) #33	PTGR2 (ENSCJAG00000011505) #35	ENSCJAG00000085540	ZNF410 (ENSCJAG00000020308) #36	FAM161B (ENSCJAG00000020363) #37
Marmoset	MODERN SPECIES	18	BCL2A1 (ENSCJAG00000007569)	ENSCJAG00000074804	ZFAND6 (ENSCJAG00000007572)	FAH (ENSCJAG00000007600)	ENSCJAG00000062260	ARNT2 (ENSCJAG00000007640)	ABHD17C (ENSCJAG00000007705)	CEMIP (ENSCJAG00000007708)	MESD (ENSCJAG00000048641)	TLNRD1 (ENSCJAG00000007827)	ENSCJAG00000079259	CFAP161 (ENSCJAG00000055791)	IL16 (ENSCJAG00000007856)	STARD5 (ENSCJAG00000081692)	TMC3 (ENSCJAG00000007980)	ENSCJAG00000046744 #22	ENSCJAG00000086878	ENSCJAG00000072223	ENSCJAG00000022058	MEX3B (ENSCJAG00000008043)	EFL1 (ENSCJAG00000015607)	SAXO2 (ENSCJAG00000062415)	ENSCJAG00000051686	ADAMTSL3 (ENSCJAG00000015699)	BNC1 (ENSCJAG00000015761)	HDGFL3 (ENSCJAG00000015775)	TM6SF1 (ENSCJAG00000015800)	BTBD1 (ENSCJAG00000083105)	ENSCJAG00000015877	ENSCJAG00000086251	ENSCJAG00000083892
Cebidae_a	ANCESTRAL SPECIES	4	ENSGT00940000161933 #11	ENSGT00940000162712 #10	ENSGT00520000055955.c #8	ENSGT00830000128402 #9	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000155162.c.b	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00910000147388	ENSGT00390000009546.a #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000000083.a #27	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #35	ENSGT00940000158098 #36	ENSGT00940000159998 #37	ENSGT00390000015152
Bolivian squirrel monkey	MODERN SPECIES	52	SYNJ2BP (ENSSBOG00000028807) #9	ENSSBOG00000021356 #11	ADAM20 (ENSSBOG00000025132) #12	TTC9 (ENSSBOG00000035147) #14	MAP3K9 (ENSSBOG00000026870) #15	ENSSBOG00000027808	PCNX1 (ENSSBOG00000021906) #16	ENSSBOG00000034324	SIPA1L1 (ENSSBOG00000025880) #17	ENSSBOG00000027922	ENSSBOG00000007314	RGS6 (ENSSBOG00000029364) #18	DPF3 (ENSSBOG00000034660) #19	DCAF4 (ENSSBOG00000033529) #20	ZFYVE1 (ENSSBOG00000024876) #21	RBM25 (ENSSBOG00000034153) #22	PSEN1 (ENSSBOG00000023450) #23	PAPLN (ENSSBOG00000025394) #24	NUMB (ENSSBOG00000033352) #25	HEATR4 (ENSSBOG00000018986) #26	RIOX1 (ENSSBOG00000013673) #27	ENSSBOG00000034097 #28	ACOT4 (ENSSBOG00000011298) #29	ENSSBOG00000021771 #30	ENSSBOG00000022744	ENSSBOG00000025995 #31	MIDEAS (ENSSBOG00000029806) #33	PTGR2 (ENSSBOG00000026681) #35	ZNF410 (ENSSBOG00000032182) #36	ENSSBOG00000034409 #37	COQ6 (ENSSBOG00000028801)
Capuchin	MODERN SPECIES	54	ENSCCAG00000016529 #11	MED6 (ENSCCAG00000003359) #13	TTC9 (ENSCCAG00000025011) #14	MAP3K9 (ENSCCAG00000035688) #15	ENSCCAG00000037545	PCNX1 (ENSCCAG00000029639) #16	SNRPC (ENSCCAG00000036059)	SIPA1L1 (ENSCCAG00000030332) #17	ENSCCAG00000017345	RGS6 (ENSCCAG00000029956) #18	ENSCCAG00000021283	DPF3 (ENSCCAG00000034749) #19	DCAF4 (ENSCCAG00000033783) #20	ZFYVE1 (ENSCCAG00000031934) #21	ENSCCAG00000009724	RBM25 (ENSCCAG00000030446) #22	PSEN1 (ENSCCAG00000036998) #23	PAPLN (ENSCCAG00000032497) #24	NUMB (ENSCCAG00000029310) #25	RIOX1 (ENSCCAG00000019473) #27	HEATR4 (ENSCCAG00000024834) #26	ENSCCAG00000026985 #28	ACOT4 (ENSCCAG00000026334) #29	ENSCCAG00000028536	ACOT6 (ENSCCAG00000030425) #30	DNAL1 (ENSCCAG00000024968) #31	PNMA1 (ENSCCAG00000015385) #32	MIDEAS (ENSCCAG00000037089) #33	PTGR2 (ENSCCAG00000033557) #35	ZNF410 (ENSCCAG00000030057) #36	FAM161B (ENSCCAG00000032037) #37
Mas night monkey	MODERN SPECIES	825	TTC9 (ENSANAG00000022265) #14	MAP3K9 (ENSANAG00000001676) #15	ENSANAG00000025022	PCNX1 (ENSANAG00000020800) #16	ENSANAG00000020317	ENSANAG00000030114	SIPA1L1 (ENSANAG00000038424) #17	RGS6 (ENSANAG00000032870) #18	ENSANAG00000035122	DPF3 (ENSANAG00000024095) #19	DCAF4 (ENSANAG00000033863) #20	ZFYVE1 (ENSANAG00000019269) #21	ENSANAG00000021022	ENSANAG00000020515	ENSANAG00000020412	RBM25 (ENSANAG00000028295) #22	ENSANAG00000005418	ENSANAG00000036030	PSEN1 (ENSANAG00000026358) #23	PAPLN (ENSANAG00000021965) #24	NUMB (ENSANAG00000031899) #25	RIOX1 (ENSANAG00000018079) #27	HEATR4 (ENSANAG00000026083) #26	ENSANAG00000025037 #28	ACOT4 (ENSANAG00000020773) #29	ACOT6 (ENSANAG00000011051) #30	DNAL1 (ENSANAG00000030053) #31	PNMA1 (ENSANAG00000019370) #32	MIDEAS (ENSANAG00000029623) #33	PTGR2 (ENSANAG00000037046) #35	ZNF410 (ENSANAG00000030872) #36
Tarsier	MODERN SPECIES	6465														DCAF4 (ENSTSYG00000010001) #20	ZFYVE1 (ENSTSYG00000014293) #21	RBM25 (ENSTSYG00000003024) #22	PSEN1 (ENSTSYG00000008434) #23	ENSTSYG00000002063	PAPLN (ENSTSYG00000033060) #24	NUMB (ENSTSYG00000010352) #25
Strepsirrhini	ANCESTRAL SPECIES	2	ENSGT00520000055955 #8	ENSGT00830000128402 #9	ENSGT00940000161933 #11	ENSGT00940000162712 #10	ENSGT00940000161067 #12	ENSGT00390000017666.j #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00860000135749	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000000083.a #27	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #35	ENSGT00940000158098 #36	ENSGT00940000159998 #37	ENSGT00390000015152
Lemuriformes	ANCESTRAL SPECIES	28	ENSGT00520000055955 #8	ENSGT00830000128402 #9	ENSGT00940000161933 #11	ENSGT00940000162712 #10	ENSGT00940000161067 #12	ENSGT00390000017666.j #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00860000135749	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000000083.a #27	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #35	ENSGT00940000158098 #36	ENSGT00940000159998 #37	ENSGT00390000015152
Mouse lemur	MODERN SPECIES	22	ENSMICG00000045649	ENSMICG00000035515	ENSMICG00000043615	ENSMICG00000015450 #18	ADAM21 (ENSMICG00000034380) #10	ADAM20 (ENSMICG00000036625) #12	MED6 (ENSMICG00000012994) #13	TTC9 (ENSMICG00000030903) #14	MAP3K9 (ENSMICG00000013005) #15	PCNX1 (ENSMICG00000013023) #16	SIPA1L1 (ENSMICG00000014353) #17	ENSMICG00000038287 #18	DPF3 (ENSMICG00000015475) #19	ENSMICG00000015497 #20	ZFYVE1 (ENSMICG00000015510) #21	RBM25 (ENSMICG00000034082) #22	PSEN1 (ENSMICG00000017923) #23	ENSMICG00000035778	ENSMICG00000047520	PAPLN (ENSMICG00000017924) #24	ENSMICG00000017925 #25	HEATR4 (ENSMICG00000008517) #26	ENSMICG00000002778 #29	ENSMICG00000046968 #28	ENSMICG00000044045 #28	ENSMICG00000035134 #29	ENSMICG00000036692	ACOT6 (ENSMICG00000033023) #30	DNAL1 (ENSMICG00000032196) #31	PNMA1 (ENSMICG00000002795) #32	MIDEAS (ENSMICG00000002805) #33
Lemuriformes_a	ANCESTRAL SPECIES	11	ENSGT00520000055955 #8	ENSGT00830000128402 #9	ENSGT00940000161933 #11	ENSGT00940000162712 #10	ENSGT00940000161067 #12	ENSGT00390000017666.j #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00860000135749	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000000083.a #27	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #35	ENSGT00940000158098 #36	ENSGT00940000159998 #37	ENSGT00390000015152
Coquerels sifaka	MODERN SPECIES	653	SRSF5 (ENSPCOG00000014442)	SLC10A1 (ENSPCOG00000026260)	SMOC1 (ENSPCOG00000019775)	SLC8A3 (ENSPCOG00000019072)	COX16 (ENSPCOG00000024374) #8	SYNJ2BP (ENSPCOG00000026833) #9	MED6 (ENSPCOG00000003889) #13	TTC9 (ENSPCOG00000023858) #14	MAP3K9 (ENSPCOG00000021689) #15	PCNX1 (ENSPCOG00000015594) #16	SIPA1L1 (ENSPCOG00000026510) #17	RGS6 (ENSPCOG00000021594) #18	DPF3 (ENSPCOG00000022441) #19	ENSPCOG00000022782 #20	ZFYVE1 (ENSPCOG00000017005) #21	RBM25 (ENSPCOG00000023107) #22	PSEN1 (ENSPCOG00000018929) #23	PAPLN (ENSPCOG00000010404) #24	NUMB (ENSPCOG00000019381) #25	HEATR4 (ENSPCOG00000015681) #26	ENSPCOG00000028629 #28	ACOT4 (ENSPCOG00000026670) #29	ENSPCOG00000020459 #28	ENSPCOG00000020943 #30	DNAL1 (ENSPCOG00000025043) #31	PNMA1 (ENSPCOG00000013444) #32	MIDEAS (ENSPCOG00000022588) #33	PTGR2 (ENSPCOG00000023980) #35	ZNF410 (ENSPCOG00000021079) #36	FAM161B (ENSPCOG00000002979) #37	COQ6 (ENSPCOG00000023336)
Greater bamboo lemur	DUPLICATION
Greater bamboo lemur	MODERN SPECIES	802									SIPA1L1 (ENSPSMG00000014702) #17	RGS6 (ENSPSMG00000015304) #18	DPF3 (ENSPSMG00000015731) #19	ENSPSMG00000015744	ENSPSMG00000015813 #20	ZFYVE1 (ENSPSMG00000015851) #21	ENSPSMG00000015868	ENSPSMG00000015962 #22	PSEN1 (ENSPSMG00000016104) #23	PAPLN (ENSPSMG00000016270) #24	NUMB (ENSPSMG00000016550) #25	RIOX1 (ENSPSMG00000016647) #27	ENSPSMG00000016650 #26	ACOT4 (ENSPSMG00000016672) #29	ENSPSMG00000016682 #30	ENSPSMG00000016693 #31	SOX3 (ENSPSMG00000016701)
Greater bamboo lemur	MODERN SPECIES	572							GUCA1C (ENSPSMG00000005029)	TRAT1 (ENSPSMG00000005044)	RETNLB (ENSPSMG00000005048)	DZIP3 (ENSPSMG00000005167)	CIP2A (ENSPSMG00000005260)	HHLA2 (ENSPSMG00000005283)	IFT57 (ENSPSMG00000005302)	CD47 (ENSPSMG00000005307)	BBX (ENSPSMG00000005421)	ENSPSMG00000005668 #22	CCDC54 (ENSPSMG00000005672)	CBLB (ENSPSMG00000005758)	ALCAM (ENSPSMG00000005823)	ZPLD1 (ENSPSMG00000005890)	ENSPSMG00000005899	NFKBIZ (ENSPSMG00000005927)	NXPE3 (ENSPSMG00000005951)	CEP97 (ENSPSMG00000005986)	RPL24 (ENSPSMG00000006020)	ZBTB11 (ENSPSMG00000006051)
Bushbaby	MODERN SPECIES	311	ENSOGAG00000002415	ENSOGAG00000003385 #11	ADAM21 (ENSOGAG00000032627) #10	ADAM20 (ENSOGAG00000034319) #12	MED6 (ENSOGAG00000001311) #13	TTC9 (ENSOGAG00000031297) #14	ENSOGAG00000026938	MAP3K9 (ENSOGAG00000011147) #15	PCNX1 (ENSOGAG00000010264) #16	SIPA1L1 (ENSOGAG00000003167) #17	RGS6 (ENSOGAG00000013482) #18	DPF3 (ENSOGAG00000013496) #19	ENSOGAG00000034613	ENSOGAG00000012383 #20	ZFYVE1 (ENSOGAG00000012390) #21	RBM25 (ENSOGAG00000014986) #22	ENSOGAG00000031643 #23
Euarchontoglires_A	ANCESTRAL SPECIES	3	ENSGT00940000157547	ENSGT00520000055955 #8	ENSGT00830000128402 #9	ENSGT00940000161933 #11	ENSGT00940000162712 #10	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000000083.a #27	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #35	ENSGT00940000158098 #36	ENSGT00940000159998 #37	ENSGT00390000015152
Tree shrew	MODERN SPECIES	825																ENSTBEG00000010538 #22
Glires	ANCESTRAL SPECIES	12	ENSGT00940000157547	ENSGT00520000055955 #8	ENSGT00830000128402 #9	ENSGT00940000161933 #11	ENSGT00940000162712 #10	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000000083.a #27	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #35	ENSGT00940000158098 #36	ENSGT00940000159998 #37	ENSGT00390000015152
Lagomorpha	ANCESTRAL SPECIES	25											ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000000083.a #27	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a #28	ENSGT00390000016904 #31	ENSGT00940000157459 #33	ENSGT00940000156793 #35	ENSGT00940000158098 #36	ENSGT00940000159998 #37	ENSGT00390000015152	ENSGT01100000263540.A.b	ENSGT00940000154427.A	ENSGT00940000156110
Rabbit	MODERN SPECIES	12										ENSOCUG00000012114	RGS6 (ENSOCUG00000000341) #18	ENSOCUG00000031853	DPF3 (ENSOCUG00000016740) #19	ENSOCUG00000009405 #20	ZFYVE1 (ENSOCUG00000008398) #21	RBM25 (ENSOCUG00000013737) #22	PSEN1 (ENSOCUG00000014545) #23	PAPLN (ENSOCUG00000010681) #24	NUMB (ENSOCUG00000010702) #25	ENSOCUG00000031673	RIOX1 (ENSOCUG00000021858) #27	HEATR4 (ENSOCUG00000005994) #26	ENSOCUG00000030890	ENSOCUG00000022543 #29	ENSOCUG00000029229 #30	DNAL1 (ENSOCUG00000007284) #31	MIDEAS (ENSOCUG00000007290) #33	PTGR2 (ENSOCUG00000006785) #35	ZNF410 (ENSOCUG00000006787) #36	FAM161B (ENSOCUG00000006791) #37	COQ6 (ENSOCUG00000006799)
Pika	MODERN SPECIES	589														ENSOPRG00000016720 #20	ZFYVE1 (ENSOPRG00000016734) #21	ENSOPRG00000016744 #22
Rodentia	ANCESTRAL SPECIES	3	ENSGT00940000157547	ENSGT00520000055955 #8	ENSGT00830000128402 #9	ENSGT00940000161933 #11	ENSGT00940000162712 #10	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000000083.a #27	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.a.a.c.b #28	ENSGT01050000245403.b	ENSGT01050000245403.a	ENSGT01010000222336.a.a.a.ob.a.a.c.a #28	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #35
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00940000157547	ENSGT00520000055955 #8	ENSGT00830000128402 #9	ENSGT00940000161933 #11	ENSGT00940000162712 #10	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005.b #25	ENSGT00390000000083.a #27	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a.c.b #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #35	ENSGT00940000158098 #36	ENSGT00940000159998 #37	ENSGT00390000015152
Sciuridae	ANCESTRAL SPECIES	8	ENSGT00940000157547	ENSGT00520000055955 #8	ENSGT00830000128402 #9	ENSGT00940000161933 #11	ENSGT00940000162712 #10	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005.b #25	ENSGT00390000000083.a #27	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a.c.b #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #35	ENSGT00940000158098 #36	ENSGT00940000159998 #37	ENSGT00390000015152
Marmotini	ANCESTRAL SPECIES	27				ENSGT00940000161933.jb #11	ENSGT00940000162712 #10	ENSGT00940000161067 #12	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005.b #25	ENSGT00390000000083.a #27	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a.c.b.m #28	ENSGT01010000222336.a.a.a.ob.a.a.c.b.n #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #35	ENSGT00940000158098 #36	ENSGT00940000159998 #37
Marmotini_b	ANCESTRAL SPECIES	31					ENSGT00940000161933.jb #11	ENSGT00940000162712 #10	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005.b #25	ENSGT00390000000083.a #27	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a.c.b.m #28	ENSGT01010000222336.a.a.a.ob.a.a.c.b.n #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #35	ENSGT00940000158098 #36	ENSGT00940000159998 #37
Arctic ground squirrel	MODERN SPECIES	8							MED6 (ENSUPAG00010016393) #13	TTC9 (ENSUPAG00010016377) #14	MAP3K9 (ENSUPAG00010016024) #15	PCNX1 (ENSUPAG00010015898) #16	SIPA1L1 (ENSUPAG00010015844) #17	RGS6 (ENSUPAG00010015605) #18	DPF3 (ENSUPAG00010015555) #19	ENSUPAG00010015527 #20	ZFYVE1 (ENSUPAG00010015501) #21	RBM25 (ENSUPAG00010015461) #22	PSEN1 (ENSUPAG00010015426) #23	PAPLN (ENSUPAG00010015337) #24	NUMB (ENSUPAG00010015200) #25	RIOX1 (ENSUPAG00010015192) #27	ENSUPAG00010015167 #26	ENSUPAG00010015131 #28	ACOT4 (ENSUPAG00010015117) #29	ACOT6 (ENSUPAG00010015106) #30	DNAL1 (ENSUPAG00010015067) #31	PNMA1 (ENSUPAG00010015061) #32	MIDEAS (ENSUPAG00010014994) #33	ENSUPAG00010014987	PTGR2 (ENSUPAG00010014963) #35	ZNF410 (ENSUPAG00010014867) #36	FAM161B (ENSUPAG00010014838) #37
Squirrel	MODERN SPECIES	88					ENSSTOG00000022855 #11	ADAM21 (ENSSTOG00000028832) #10	MED6 (ENSSTOG00000014084) #13	MAP3K9 (ENSSTOG00000014094) #15	PCNX1 (ENSSTOG00000013614) #16	ENSSTOG00000030589	SIPA1L1 (ENSSTOG00000010105) #17	RGS6 (ENSSTOG00000013412) #18	DPF3 (ENSSTOG00000011091) #19	ENSSTOG00000020210 #20	ZFYVE1 (ENSSTOG00000011109) #21	RBM25 (ENSSTOG00000011117) #22	PSEN1 (ENSSTOG00000003845) #23	PAPLN (ENSSTOG00000003857) #24	ENSSTOG00000003900 #25	RIOX1 (ENSSTOG00000024278) #27	HEATR4 (ENSSTOG00000007745) #26	ENSSTOG00000032187 #28	ENSSTOG00000003345 #28	ACOT4 (ENSSTOG00000003338) #29	ACOT6 (ENSSTOG00000003091) #30	DNAL1 (ENSSTOG00000000420) #31	ENSSTOG00000029464	PNMA1 (ENSSTOG00000000422) #32	MIDEAS (ENSSTOG00000000423) #33	PTGR2 (ENSSTOG00000008590) #35	ZNF410 (ENSSTOG00000024235) #36
Alpin marmot	MODERN SPECIES	1	ENSMMMG00000015044	RNASE4 (ENSMMMG00000015054)	ANG (ENSMMMG00000015059)	ENSMMMG00000015065 #11	ENSMMMG00000015068 #11	ADAM21 (ENSMMMG00000015081) #10	ADAM20 (ENSMMMG00000015097) #12	MED6 (ENSMMMG00000015151) #13	MAP3K9 (ENSMMMG00000015173) #15	PCNX1 (ENSMMMG00000015257) #16	SIPA1L1 (ENSMMMG00000015319) #17	RGS6 (ENSMMMG00000015497) #18	DPF3 (ENSMMMG00000015579) #19	ENSMMMG00000015602 #20	ZFYVE1 (ENSMMMG00000015623) #21	RBM25 (ENSMMMG00000015650) #22	PSEN1 (ENSMMMG00000015676) #23	PAPLN (ENSMMMG00000015699) #24	NUMB (ENSMMMG00000015813) #25	RIOX1 (ENSMMMG00000015975) #27	ENSMMMG00000015982 #28	ENSMMMG00000015989 #28	ENSMMMG00000015998 #28	ENSMMMG00000016020 #30	DNAL1 (ENSMMMG00000016024) #31	PNMA1 (ENSMMMG00000016038) #32	MIDEAS (ENSMMMG00000016040) #33	PTGR2 (ENSMMMG00000016067) #35	ENSMMMG00000016079	ZNF410 (ENSMMMG00000016081) #36	FAM161B (ENSMMMG00000016102) #37
Eurasian red squirrel	MODERN SPECIES	11	SYNJ2BP (ENSSVLG00005010806) #9	ENSSVLG00005010758 #11	ADAM21 (ENSSVLG00005010725) #10	ADAM20 (ENSSVLG00005010699) #12	ENSSVLG00005010644 #13	TTC9 (ENSSVLG00005010601) #14	MAP3K9 (ENSSVLG00005010363) #15	PCNX1 (ENSSVLG00005009899) #16	ENSSVLG00005009795	SIPA1L1 (ENSSVLG00005009679) #17	ENSSVLG00005009607	RGS6 (ENSSVLG00005008662) #18	DPF3 (ENSSVLG00005008293) #19	ENSSVLG00005008049 #20	ZFYVE1 (ENSSVLG00005007958) #21	RBM25 (ENSSVLG00005007885) #22	PSEN1 (ENSSVLG00005007728) #23	PAPLN (ENSSVLG00005007348) #24	NUMB (ENSSVLG00005007168) #25	RIOX1 (ENSSVLG00005007089) #27	ENSSVLG00005007042 #26	ENSSVLG00005007000 #28	ENSSVLG00005006975	ENSSVLG00005006698 #28	ENSSVLG00005006583	ACOT4 (ENSSVLG00005006548) #29	ENSSVLG00005006522 #30	DNAL1 (ENSSVLG00005006438) #31	PNMA1 (ENSSVLG00005006415) #32	MIDEAS (ENSSVLG00005006379) #33	PTGR2 (ENSSVLG00005006327) #35
Hystricomorpha	ANCESTRAL SPECIES	33	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00520000055955 #8	ENSGT00830000128402 #9	ENSGT00940000162712 #10	ENSGT00940000161933 #11	ENSGT00390000017666.p #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005.a #25	ENSGT00390000000083.a #27	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a.c.b #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #35	ENSGT00940000158098 #36	ENSGT00940000159998 #37	ENSGT00390000015152
Hystricomorpha_a	ANCESTRAL SPECIES	27	ENSGT00950000182808.a.a.b.a	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00520000055955 #8	ENSGT00830000128402 #9	ENSGT00940000161933 #11	ENSGT00390000017666.p #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005.a #25	ENSGT00390000000083.a #27	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a.c.b #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #35	ENSGT00940000158098 #36	ENSGT00940000159998 #37	ENSGT00390000015152
Guinea pig	MODERN SPECIES	20	SMOC1 (ENSCPOG00000008973)	SLC8A3 (ENSCPOG00000008979)	COX16 (ENSCPOG00000038104) #8	SYNJ2BP (ENSCPOG00000023967) #9	ENSCPOG00000026757 #11	MED6 (ENSCPOG00000012529) #13	TTC9 (ENSCPOG00000001801) #14	MAP3K9 (ENSCPOG00000001803) #15	PCNX1 (ENSCPOG00000001806) #16	ENSCPOG00000033708	SIPA1L1 (ENSCPOG00000013071) #17	RGS6 (ENSCPOG00000007309) #18	DPF3 (ENSCPOG00000007322) #19	ENSCPOG00000013878 #20	ZFYVE1 (ENSCPOG00000013880) #21	RBM25 (ENSCPOG00000002479) #22	PSEN1 (ENSCPOG00000035027) #23	PAPLN (ENSCPOG00000019279) #24	NUMB (ENSCPOG00000034984) #25	RIOX1 (ENSCPOG00000024797) #27	ENSCPOG00000038505 #28	HEATR4 (ENSCPOG00000001833) #26	ACOT4 (ENSCPOG00000036993) #29	ACOT6 (ENSCPOG00000032534) #30	DNAL1 (ENSCPOG00000010655) #31	PNMA1 (ENSCPOG00000010657) #32	MIDEAS (ENSCPOG00000010659) #33	PTGR2 (ENSCPOG00000027073) #35	ZNF410 (ENSCPOG00000009601) #36	FAM161B (ENSCPOG00000040022) #37	COQ6 (ENSCPOG00000009610)
Hystricomorpha_b	ANCESTRAL SPECIES	46	ENSGT00390000001277	ENSGT00940000155077.e.a	ENSGT00940000158237	ENSGT00940000159561	ENSGT00390000011854	ENSGT00530000064222.b	ENSGT00940000161472 #14	ENSGT00390000017666.p #13	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005.a #25	ENSGT00390000000083.a #27	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a.c.b #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT00940000157459 #33	ENSGT00940000156793 #35	ENSGT00940000158098 #36	ENSGT00940000159998 #37	ENSGT00390000015152	ENSGT01100000263540.A.b
Long-tailed chinchilla	MODERN SPECIES	230								ENSCLAG00000006511 #13	MAP3K9 (ENSCLAG00000006444) #15	PCNX1 (ENSCLAG00000006042) #16	SIPA1L1 (ENSCLAG00000005617) #17	RGS6 (ENSCLAG00000004860) #18	DPF3 (ENSCLAG00000004345) #19	ENSCLAG00000004165 #20	ZFYVE1 (ENSCLAG00000004097) #21	RBM25 (ENSCLAG00000003977) #22	PSEN1 (ENSCLAG00000005284) #23	PAPLN (ENSCLAG00000004775) #24	ENSCLAG00000004464 #25	ENSCLAG00000004315	RIOX1 (ENSCLAG00000004260) #27	HEATR4 (ENSCLAG00000004180) #26	ENSCLAG00000004124 #28	ACOT4 (ENSCLAG00000004063) #29	ENSCLAG00000004019 #28	ENSCLAG00000003947 #30	DNAL1 (ENSCLAG00000003917) #31	MIDEAS (ENSCLAG00000003802) #33	PTGR2 (ENSCLAG00000003701) #35	ZNF410 (ENSCLAG00000003640) #36	FAM161B (ENSCLAG00000003575) #37
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	30	ENSHGLG00000037239	ENSHGLG00000039108	ENSHGLG00000042124	ENSHGLG00000034006	ENSHGLG00000036530	ENSHGLG00000014738	ENSHGLG00000015295	ENSHGLG00000039067	ENSHGLG00000013762	ENSHGLG00000020939	TEDC1 (ENSHGLG00000015063)	ENSHGLG00000015816	ENSHGLG00000017645	ENSHGLG00000014183	ENSHGLG00000044556	ENSHGLG00000033226 #22	ENSHGLG00000047803	ENSHGLG00000044136	ENSHGLG00000006838	ENSHGLG00000050892	ENSHGLG00000038079	ENSHGLG00000004952	ENSHGLG00000044228	ENSHGLG00000039423	ENSHGLG00000047609	ENSHGLG00000035332	ENSHGLG00000007530	ENSHGLG00000031918	ENSHGLG00000037251	ENSHGLG00000017159	ENSHGLG00000040546
Naked mole-rat female	MODERN SPECIES	18	MED6 (ENSHGLG00000019384) #13	ENSHGLG00000010126	TTC9 (ENSHGLG00000033470) #14	MAP3K9 (ENSHGLG00000014001) #15	PCNX1 (ENSHGLG00000012007) #16	SIPA1L1 (ENSHGLG00000011768) #17	ENSHGLG00000041959	ENSHGLG00000036909	RGS6 (ENSHGLG00000012031) #18	ENSHGLG00000048633	DPF3 (ENSHGLG00000006635) #19	ENSHGLG00000042994 #20	ENSHGLG00000047889	ZFYVE1 (ENSHGLG00000015923) #21	ENSHGLG00000035871	ENSHGLG00000014745 #22	PSEN1 (ENSHGLG00000044979) #23	PAPLN (ENSHGLG00000013495) #24	ENSHGLG00000017752 #25	ENSHGLG00000039431	ENSHGLG00000039363	ENSHGLG00000049066 #26	RIOX1 (ENSHGLG00000034391) #27	ENSHGLG00000047596 #28	ENSHGLG00000048609	ACOT6 (ENSHGLG00000040633) #30	ENSHGLG00000013635	DNAL1 (ENSHGLG00000013059) #31	PNMA1 (ENSHGLG00000050390) #32	MIDEAS (ENSHGLG00000012075) #33	PTGR2 (ENSHGLG00000009670) #35
Rodentia_B	ANCESTRAL SPECIES	7	ENSGT00950000182808.a.a.b.a	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00520000055955 #8	ENSGT00830000128402 #9	ENSGT00940000162712 #10	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000000083.a #27	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.a.a.c.b #28	ENSGT01050000245403.b	ENSGT01050000245403.a	ENSGT01010000222336.a.a.a.ob.a.a.c.a #28	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #35
Myomorpha	ANCESTRAL SPECIES	7	ENSGT00950000182808.a.a.b.a	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00520000055955 #8	ENSGT00830000128402 #9	ENSGT00940000162712 #10	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000000083.a #27	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.a.a.c.b #28	ENSGT01050000245403.b	ENSGT01050000245403.a	ENSGT01010000222336.a.a.a.ob.a.a.c.a #28	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #35
Muroidea	ANCESTRAL SPECIES	16	ENSGT00950000182808.a.a.b.a	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00520000055955 #8	ENSGT00830000128402 #9	ENSGT00940000162712 #10	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000000083.a #27	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a.c.b #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.a.a.c.a #28	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #35	ENSGT00940000158098 #36	ENSGT00940000159998 #37
Muroidea_A	ANCESTRAL SPECIES	15	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00940000161933 #11	ENSGT00520000055955 #8	ENSGT00830000128402 #9	ENSGT00940000162712 #10	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000000083.a #27	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a.c.b #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.a.a.c.a.b #28	ENSGT01050000245403.a	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #28	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #35
Cricetidae	ANCESTRAL SPECIES	17	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00940000161933 #11	ENSGT00520000055955 #8	ENSGT00830000128402 #9	ENSGT00940000162712 #10	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000000083.a #27	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a.c.b.a #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.a.a.c.b.b #28	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #28	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #35	ENSGT00940000158098 #36
Cricetidae_B	ANCESTRAL SPECIES	18	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00940000161933 #11	ENSGT00520000055955 #8	ENSGT00830000128402 #9	ENSGT00940000162712 #10	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000000083.a #27	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a.c.b.a #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.a.a.c.b.b #28	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #28	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #35	ENSGT00940000158098 #36
Northern American deer mouse	MODERN SPECIES	5	Smoc1 (ENSPEMG00000020096)	Slc8a3 (ENSPEMG00000007532)	ENSPEMG00000026090 #11	Cox16 (ENSPEMG00000003301) #8	ENSPEMG00000001343 #9	Adam21 (ENSPEMG00000000549) #10	Med6 (ENSPEMG00000000191) #13	Ttc9 (ENSPEMG00000028070) #14	Map3k9 (ENSPEMG00000018982) #15	Pcnx (ENSPEMG00000018423) #16	Sipa1l1 (ENSPEMG00000015088) #17	Rgs6 (ENSPEMG00000005178) #18	Dpf3 (ENSPEMG00000014009) #19	Dcaf4 (ENSPEMG00000009925) #20	Zfyve1 (ENSPEMG00000008691) #21	Rbm25 (ENSPEMG00000008001) #22	Psen1 (ENSPEMG00000006667) #23	Papln (ENSPEMG00000000670) #24	Numb (ENSPEMG00000018950) #25	Riox1 (ENSPEMG00000018431) #27	Heatr4 (ENSPEMG00000010857) #26	ENSPEMG00000011640 #28	ENSPEMG00000007692 #28	Acot4 (ENSPEMG00000024969) #29	ENSPEMG00000009464 #28	ENSPEMG00000007003 #28	Acot6 (ENSPEMG00000020726) #30	ENSPEMG00000027213	ENSPEMG00000030670 #31	ENSPEMG00000025553	Pnma1 (ENSPEMG00000001767) #32
Prairie vole	MODERN SPECIES		Slc10a1 (ENSMOCG00000015201)	Smoc1 (ENSMOCG00000019851)	Slc8a3 (ENSMOCG00000021316)	Cox16 (ENSMOCG00000004091) #8	Synj2bp (ENSMOCG00000017570) #9	Med6 (ENSMOCG00000022028) #13	Ttc9 (ENSMOCG00000018568) #14	Map3k9 (ENSMOCG00000008905) #15	Pcnx (ENSMOCG00000016626) #16	ENSMOCG00000022199	Sipa1l1 (ENSMOCG00000020326) #17	Rgs6 (ENSMOCG00000005512) #18	Dpf3 (ENSMOCG00000003784) #19	Dcaf4 (ENSMOCG00000015020) #20	Zfyve1 (ENSMOCG00000022979) #21	Rbm25 (ENSMOCG00000001935) #22	ENSMOCG00000005921	Psen1 (ENSMOCG00000009775) #23	ENSMOCG00000005015	Papln (ENSMOCG00000001461) #24	Numb (ENSMOCG00000022280) #25	Riox1 (ENSMOCG00000007570) #27	Heatr4 (ENSMOCG00000015139) #26	ENSMOCG00000005730 #28	ENSMOCG00000021013	ENSMOCG00000005600 #28	Acot4 (ENSMOCG00000013343) #29	ENSMOCG00000018416 #28	Acot5 (ENSMOCG00000000977) #28	Acot6 (ENSMOCG00000004025) #30	Dnal1 (ENSMOCG00000022267) #31
Cricetinae	ANCESTRAL SPECIES	11	ENSGT00950000182808.a.a.b.a	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00520000055955 #8	ENSGT00830000128402 #9	ENSGT00940000162712 #10	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00900000143211	ENSGT00390000000083.a #27	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a.c.b.a #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.a.a.c.b.b #28	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #28	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #35
Chinese hamster chok1gshd	MODERN SPECIES	2	Cox16 (ENSCGRG00001019589) #8	Synj2bp (ENSCGRG00001016968) #9	Adam21 (ENSCGRG00001011315) #10	ENSCGRG00001013217	Med6 (ENSCGRG00001003723) #13	Ttc9 (ENSCGRG00001023468) #14	Map3k9 (ENSCGRG00001014451) #15	Pcnx (ENSCGRG00001005677) #16	Sipa1l1 (ENSCGRG00001001236) #17	ENSCGRG00001011338	Rgs6 (ENSCGRG00001021356) #18	Dpf3 (ENSCGRG00001011525) #19	Dcaf4 (ENSCGRG00001000557) #20	Zfyve1 (ENSCGRG00001024058) #21	ENSCGRG00001023149	Rbm25 (ENSCGRG00001020817) #22	Psen1 (ENSCGRG00001006926) #23	Papln (ENSCGRG00001003202) #24	ENSCGRG00001000963	Numb (ENSCGRG00001016054) #25	ENSCGRG00001014450	ENSCGRG00001010571	ENSCGRG00001011878	Riox1 (ENSCGRG00001010518) #27	Heatr4 (ENSCGRG00001008018) #26	ENSCGRG00001005504 #28	ENSCGRG00001000843 #28	Acot4 (ENSCGRG00001007771) #29	ENSCGRG00001011559 #28	ENSCGRG00001023275 #28	ENSCGRG00001020145 #28
Golden Hamster	MODERN SPECIES	652	Slc8a3 (ENSMAUG00000012390)	Synj2bp (ENSMAUG00000002533) #9	ENSMAUG00000013912	Adam21 (ENSMAUG00000008078) #10	Med6 (ENSMAUG00000007051) #13	Ttc9 (ENSMAUG00000012771) #14	Map3k9 (ENSMAUG00000020034) #15	Pcnx (ENSMAUG00000015734) #16	ENSMAUG00000005000 #17	ENSMAUG00000008287 #17	Rgs6 (ENSMAUG00000021028) #18	ENSMAUG00000003690	Dpf3 (ENSMAUG00000022055) #19	Dcaf4 (ENSMAUG00000016053) #20	Zfyve1 (ENSMAUG00000001400) #21	ENSMAUG00000017751 #22	ENSMAUG00000015673	Psen1 (ENSMAUG00000004090) #23	Papln (ENSMAUG00000015070) #24	Numb (ENSMAUG00000017202) #25	ENSMAUG00000021947	Riox1 (ENSMAUG00000019549) #27	Heatr4 (ENSMAUG00000015300) #26	ENSMAUG00000007215 #28
Murinae	ANCESTRAL SPECIES	8	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00940000161933 #11	ENSGT00520000055955 #8	ENSGT00830000128402 #9	ENSGT00940000162712 #10	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000000083.a #27	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a.c.b #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.a.a.c.a.b #28	ENSGT01050000245403.a	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #28	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #35
Mus	ANCESTRAL SPECIES	10	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00940000161933 #11	ENSGT00520000055955 #8	ENSGT00830000128402 #9	ENSGT00940000162712 #10	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a.c.b.d #28	ENSGT00390000000083.a #27	ENSGT01010000222336.a.a.a.ob.a.a.c.b.c #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.a.a.c.a.b #28	ENSGT01050000245403.a	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #28	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33
Mus_A	ANCESTRAL SPECIES	17	ENSGT00940000157547	ENSGT00940000161933 #11	ENSGT00520000055955 #8	ENSGT00830000128402 #9	ENSGT00940000162712 #10	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000156726.f	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a.c.b.d #28	ENSGT00390000000083.a #27	ENSGT01010000222336.a.a.a.ob.a.a.c.b.c #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.a.a.c.a.b #28	ENSGT01050000245403.a	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #28	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33
Mus_B	ANCESTRAL SPECIES	17	ENSGT00940000157547	ENSGT00940000161933.hb.a #11	ENSGT00520000055955 #8	ENSGT00830000128402 #9	ENSGT00940000162712 #10	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000156726.f	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a.c.b.d #28	ENSGT00390000000083.a #27	ENSGT00900000143211	ENSGT01010000222336.a.a.a.ob.a.a.c.b.c #28	ENSGT01010000222336.a.a.a.ob.a.b #29	ENSGT01010000222336.a.a.a.ob.a.a.c.a.b #28	ENSGT01050000245403.a	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #28	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32
Mus_C	ANCESTRAL SPECIES	11	ENSGT00390000018436.a.a	ENSGT00940000157547	ENSGT00520000055955 #8	ENSGT00830000128402 #9	ENSGT00940000162712 #10	ENSGT00390000017666 #13	ENSGT00940000161472 #14	ENSGT00940000158243 #15	ENSGT00940000157417 #16	ENSGT00940000155944 #17	ENSGT00940000156726.f	ENSGT00940000157159 #18	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #23	ENSGT00940000156891 #24	ENSGT00940000156005 #25	ENSGT00390000013207 #26	ENSGT01010000222336.a.a.a.ob.a.a.c.b.d #28	ENSGT00390000000083.a #27	ENSGT00900000143211	ENSGT01010000222336.a.a.a.ob.a.a.c.b.c #28	ENSGT01050000245403.b	ENSGT01010000222336.a.a.a.ob.a.a.c.a.b #28	ENSGT01050000245403.a	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #28	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32
Steppe mouse	MODERN SPECIES	3303		ENSMSIG00000026023 #9	Adam21 (ENSMSIG00000026079) #10	Med6 (ENSMSIG00000026084) #13	Ttc9 (ENSMSIG00000026125) #14	Map3k9 (ENSMSIG00000026137) #15	Pcnx (ENSMSIG00000026173) #16	Sipa1l1 (ENSMSIG00000000195) #17	ENSMSIG00000000341	ENSMSIG00000000376	Rgs6 (ENSMSIG00000000514) #18	Dpf3 (ENSMSIG00000001852) #19	Dcaf4 (ENSMSIG00000001923) #20	Zfyve1 (ENSMSIG00000001995) #21	ENSMSIG00000002025	Rbm25 (ENSMSIG00000002048) #22	Psen1 (ENSMSIG00000002158) #23	Papln (ENSMSIG00000002234) #24	ENSMSIG00000002517 #25	Heatr4 (ENSMSIG00000002642) #26	Riox1 (ENSMSIG00000002696) #27	Acot1 (ENSMSIG00000002711) #28	Acot3 (ENSMSIG00000002760) #28	ENSMSIG00000002815	ENSMSIG00000002825	Acot5 (ENSMSIG00000002856) #28	Acot6 (ENSMSIG00000002911) #30	Dnal1 (ENSMSIG00000002943) #31	Pnma1 (ENSMSIG00000003016) #32	Mideas (ENSMSIG00000003037) #33	Ptgr2 (ENSMSIG00000003090) #35
spretus	MODERN SPECIES	3	Slc8a3 (MGP_SPRETEiJ_G0018751)	MGP_SPRETEiJ_G0018752 #9	Cox16 (MGP_SPRETEiJ_G0018753) #8	MGP_SPRETEiJ_G0018754 #9	Adam21 (MGP_SPRETEiJ_G0018755) #10	Med6 (MGP_SPRETEiJ_G0018756) #13	Ttc9 (MGP_SPRETEiJ_G0018757) #14	Map3k9 (MGP_SPRETEiJ_G0018758) #15	Pcnx (MGP_SPRETEiJ_G0018759) #16	Sipa1l1 (MGP_SPRETEiJ_G0018760) #17	MGP_SPRETEiJ_G0018761	Rgs6 (MGP_SPRETEiJ_G0018762) #18	Dpf3 (MGP_SPRETEiJ_G0018763) #19	Dcaf4 (MGP_SPRETEiJ_G0018764) #20	Zfyve1 (MGP_SPRETEiJ_G0018765) #21	MGP_SPRETEiJ_G0018766 #22	Psen1 (MGP_SPRETEiJ_G0018767) #23	Papln (MGP_SPRETEiJ_G0018768) #24	Numb (MGP_SPRETEiJ_G0018769) #25	Riox1 (MGP_SPRETEiJ_G0018770) #27	MGP_SPRETEiJ_G0018771	Heatr4 (MGP_SPRETEiJ_G0018772) #26	MGP_SPRETEiJ_G0018773 #28	MGP_SPRETEiJ_G0018774 #28	MGP_SPRETEiJ_G0018775 #28	Acot3 (MGP_SPRETEiJ_G0018776) #28	Acot5 (MGP_SPRETEiJ_G0018777) #28	MGP_SPRETEiJ_G0018778 #28	Dnal1 (MGP_SPRETEiJ_G0018779) #31	Pnma1 (MGP_SPRETEiJ_G0018780) #32	Mideas (MGP_SPRETEiJ_G0018781) #33
Mouse	MODERN SPECIES	3	Gm20498 (ENSMUSG00000021139)	Cox16 (ENSMUSG00000091803) #8	Gm4787 (ENSMUSG00000072974) #11	Adam4 (ENSMUSG00000072972) #11	Synj2bp (ENSMUSG00000090935) #9	Adam21 (ENSMUSG00000008438) #10	Med6 (ENSMUSG00000002679) #13	Ttc9 (ENSMUSG00000042734) #14	Map3k9 (ENSMUSG00000042724) #15	Pcnx (ENSMUSG00000021140) #16	Sipa1l1 (ENSMUSG00000042700) #17	Rgs6 (ENSMUSG00000021219) #18	Dpf3 (ENSMUSG00000021221) #19	Dcaf4 (ENSMUSG00000021222) #20	Zfyve1 (ENSMUSG00000042628) #21	Rbm25 (ENSMUSG00000010608) #22	Psen1 (ENSMUSG00000019969) #23	Papln (ENSMUSG00000021223) #24	Numb (ENSMUSG00000021224) #25	Riox1 (ENSMUSG00000046791) #27	Heatr4 (ENSMUSG00000090843) #26	Acot2 (ENSMUSG00000021226) #28	Acot1 (ENSMUSG00000072949) #28	Acot4 (ENSMUSG00000052392) #29	Gm49366 (ENSMUSG00000113475)	Acot3 (ENSMUSG00000021228) #28	Acot5 (ENSMUSG00000042540) #28	Acot6 (ENSMUSG00000043487) #30	Dnal1 (ENSMUSG00000042523) #31	Pnma1 (ENSMUSG00000054383) #32	Mideas (ENSMUSG00000042507) #33
Ryukyu mouse	MODERN SPECIES	3	Slc8a3 (MGP_CAROLIEiJ_G0017906)	MGP_CAROLIEiJ_G0017907 #9	Cox16 (MGP_CAROLIEiJ_G0017908) #8	MGP_CAROLIEiJ_G0017909 #9	Adam21 (MGP_CAROLIEiJ_G0017910) #10	Med6 (MGP_CAROLIEiJ_G0017911) #13	Ttc9 (MGP_CAROLIEiJ_G0017912) #14	Map3k9 (MGP_CAROLIEiJ_G0017913) #15	Pcnx (MGP_CAROLIEiJ_G0017914) #16	Sipa1l1 (MGP_CAROLIEiJ_G0017915) #17	MGP_CAROLIEiJ_G0017916	Rgs6 (MGP_CAROLIEiJ_G0017917) #18	Dpf3 (MGP_CAROLIEiJ_G0017918) #19	Dcaf4 (MGP_CAROLIEiJ_G0017919) #20	Zfyve1 (MGP_CAROLIEiJ_G0017920) #21	Rbm25 (MGP_CAROLIEiJ_G0017921) #22	Psen1 (MGP_CAROLIEiJ_G0017922) #23	Papln (MGP_CAROLIEiJ_G0017923) #24	Numb (MGP_CAROLIEiJ_G0017924) #25	Riox1 (MGP_CAROLIEiJ_G0017925) #27	MGP_CAROLIEiJ_G0017926	Heatr4 (MGP_CAROLIEiJ_G0017927) #26	Acot4 (MGP_CAROLIEiJ_G0017928) #29	MGP_CAROLIEiJ_G0017929 #28	MGP_CAROLIEiJ_G0017930 #28	Acot3 (MGP_CAROLIEiJ_G0017931) #28	Acot5 (MGP_CAROLIEiJ_G0017932) #28	Acot6 (MGP_CAROLIEiJ_G0017933) #30	Dnal1 (MGP_CAROLIEiJ_G0017934) #31	Pnma1 (MGP_CAROLIEiJ_G0017935) #32	Mideas (MGP_CAROLIEiJ_G0017936) #33
Shrew mouse	MODERN SPECIES	20	Slc8a3 (MGP_PahariEiJ_G0029662)	MGP_PahariEiJ_G0029663 #11	MGP_PahariEiJ_G0029664 #9	Cox16 (MGP_PahariEiJ_G0029665) #8	Synj2bp (MGP_PahariEiJ_G0029666) #9	Adam21 (MGP_PahariEiJ_G0029667) #10	Med6 (MGP_PahariEiJ_G0029668) #13	Ttc9 (MGP_PahariEiJ_G0029669) #14	Map3k9 (MGP_PahariEiJ_G0029670) #15	Pcnx (MGP_PahariEiJ_G0029671) #16	Sipa1l1 (MGP_PahariEiJ_G0029672) #17	Rgs6 (MGP_PahariEiJ_G0029673) #18	Dpf3 (MGP_PahariEiJ_G0029674) #19	Dcaf4 (MGP_PahariEiJ_G0029675) #20	Zfyve1 (MGP_PahariEiJ_G0029676) #21	Rbm25 (MGP_PahariEiJ_G0029677) #22	Psen1 (MGP_PahariEiJ_G0029678) #23	Papln (MGP_PahariEiJ_G0029679) #24	Numb (MGP_PahariEiJ_G0029680) #25	Riox1 (MGP_PahariEiJ_G0029681) #27	MGP_PahariEiJ_G0029682	Heatr4 (MGP_PahariEiJ_G0029683) #26	Or8b47 (MGP_PahariEiJ_G0029684)	MGP_PahariEiJ_G0029685	MGP_PahariEiJ_G0029686	MGP_PahariEiJ_G0029687 #28	MGP_PahariEiJ_G0029688 #28	Acot4 (MGP_PahariEiJ_G0029689) #29	MGP_PahariEiJ_G0029690 ##30	Acot5 (MGP_PahariEiJ_G0029691) #28	Acot6 (MGP_PahariEiJ_G0029692) #30
Rat	DUPLICATION
Rat	MODERN SPECIES	16	ENSRNOG00000067664	Smoc1 (ENSRNOG00000005998)	Slc8a3 (ENSRNOG00000029871)	Cox16 (ENSRNOG00000047115) #8	Synj2bp (ENSRNOG00000006399) #9	LOC103690152 (ENSRNOG00000047682) #10	Med6 (ENSRNOG00000006976) #13	Ttc9 (ENSRNOG00000007254) #14	Map3k9 (ENSRNOG00000007271) #15	Pcnx1 (ENSRNOG00000007459) #16	Sipa1l1 (ENSRNOG00000007646) #17	Rgs6 (ENSRNOG00000008082) #18	Dpf3 (ENSRNOG00000008086) #19	Dcaf4 (ENSRNOG00000008399) #20	Zfyve1 (ENSRNOG00000008614) #21	Rbm25 (ENSRNOG00000002874) #22	Psen1 (ENSRNOG00000009110) #23	Papln (ENSRNOG00000009448) #24	Numb (ENSRNOG00000009653) #25	Heatr4 (ENSRNOG00000038183) #26	Riox1 (ENSRNOG00000010126) #27	Acot2 (ENSRNOG00000010134) #28	Acot1 (ENSRNOG00000055221) #28	Acot4 (ENSRNOG00000046864) #29	Acot3 (ENSRNOG00000027960) #28	ENSRNOG00000067599	Acot5 (ENSRNOG00000032508) #28	Acot3 (ENSRNOG00000053460) #28	Acot6 (ENSRNOG00000029637) #30	Dnal1 (ENSRNOG00000042333) #31	Pnma1 (ENSRNOG00000010553) #32
Rat	MODERN SPECIES	1	Emp2 (ENSRNOG00000002664)	Atf7ip2 (ENSRNOG00000025522)	Rpl39l (ENSRNOG00000032300)	Grin2a (ENSRNOG00000033942)	Hapstr1 (ENSRNOG00000002545)	Usp7 (ENSRNOG00000025496)	Litafd (ENSRNOG00000055413)	Carhsp1 (ENSRNOG00000002610)	Pmm2 (ENSRNOG00000002615)	Tmem186 (ENSRNOG00000027087)	Abat (ENSRNOG00000002636)	Mettl22 (ENSRNOG00000002714)	Tmem114 (ENSRNOG00000002768)	ENSRNOG00000064673	Rbfox1 (ENSRNOG00000002827)	Rbm25l1 (ENSRNOG00000064553) #22	ENSRNOG00000069050	Eef2kmt (ENSRNOG00000002876)	Alg1 (ENSRNOG00000002883)	RGD1565166 (ENSRNOG00000021796)	Nagpa (ENSRNOG00000002895)	Sec14l5 (ENSRNOG00000002917)	Ppl (ENSRNOG00000002930)	Ubn1 (ENSRNOG00000003019)	Glyr1 (ENSRNOG00000003065)	Rogdi (ENSRNOG00000003125)	Septin12 (ENSRNOG00000003137)	Dnaaf8 (ENSRNOG00000028075)	Anks3 (ENSRNOG00000003186)	Nudt16l1 (ENSRNOG00000003224)	Mgrn1 (ENSRNOG00000003234)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1502											Rgs6 (ENSNGAG00000015965) #18	Dpf3 (ENSNGAG00000018079) #19	Dcaf4 (ENSNGAG00000012972) #20	Zfyve1 (ENSNGAG00000009405) #21	ENSNGAG00000019959	Rbm25 (ENSNGAG00000018465) #22	Psen1 (ENSNGAG00000017181) #23	Papln (ENSNGAG00000019406) #24	ENSNGAG00000012297 #25	Riox1 (ENSNGAG00000003031) #27	ENSNGAG00000001266 #28	ENSNGAG00000001269 #28	Acot4 (ENSNGAG00000010998) #29	ENSNGAG00000016652 #28	Acot6 (ENSNGAG00000015805) #30	Dnal1 (ENSNGAG00000010152) #31	Pnma1 (ENSNGAG00000015203) #32	Mideas (ENSNGAG00000008541) #33	ENSNGAG00000000298	Ptgr2 (ENSNGAG00000016685) #35	Zfp410 (ENSNGAG00000000633) #36
Kangaroo rat	MODERN SPECIES	321	Srsf5 (ENSDORG00000003989)	Smoc1 (ENSDORG00000003216)	Slc8a3 (ENSDORG00000003218)	Cox16 (ENSDORG00000029887) #8	Synj2bp (ENSDORG00000010450) #9	Med6 (ENSDORG00000014901) #13	Ttc9 (ENSDORG00000027151) #14	Map3k9 (ENSDORG00000011084) #15	Pcnx (ENSDORG00000015586) #16	Sipa1l1 (ENSDORG00000014657) #17	ENSDORG00000023931	Rgs6 (ENSDORG00000015367) #18	Dpf3 (ENSDORG00000007820) #19	Dcaf4 (ENSDORG00000002888) #20	Zfyve1 (ENSDORG00000015230) #21	Rbm25 (ENSDORG00000013247) #22	Psen1 (ENSDORG00000001780) #23	Papln (ENSDORG00000007325) #24	Numb (ENSDORG00000007326) #25	Riox1 (ENSDORG00000028870) #27	Heatr4 (ENSDORG00000005873) #26	ENSDORG00000013571 #28	ENSDORG00000005537 #28	ENSDORG00000013097 #28	ENSDORG00000000064 #30	Dnal1 (ENSDORG00000015187) #31	ENSDORG00000025611 ##32	Mideas (ENSDORG00000015681) #33	Ptgr2 (ENSDORG00000024075) #35	Zfp410 (ENSDORG00000009293) #36	Fam161b (ENSDORG00000009295) #37