Percora_a	ANCESTRAL SPECIES	8	ENSGT00940000157547 #8	ENSGT00830000128402 #9	ENSGT00520000055955 #10	ENSGT00940000161933.e	ENSGT00940000162712	ENSGT00940000161067	ENSGT00390000017666 #11	ENSGT00940000161472 #13	ENSGT00940000158243 #14	ENSGT00940000157417 #15	ENSGT00940000155944 #16	ENSGT00940000157159 #17	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #24	ENSGT00940000156891 #25	ENSGT00940000156005 #26	ENSGT00390000000083.a #28	ENSGT00390000013207 #27	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b.f ##33	ENSGT01050000245403.b	ENSGT01010000222336.a.a.a.ob.a.b.e.a #32	ENSGT01010000222336.a.a.a.ob.b #33	ENSGT00390000016904 #35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098
Bovidae	ANCESTRAL SPECIES	7	ENSGT00390000018436.a.a #7	ENSGT00940000157547 #8	ENSGT00830000128402 #9	ENSGT00520000055955 #10	ENSGT00940000161933.e	ENSGT00940000162712	ENSGT00390000017666 #11	ENSGT00940000161472 #13	ENSGT00940000158243 #14	ENSGT00940000157417 #15	ENSGT00940000155944 #16	ENSGT00940000157159 #17	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #24	ENSGT00940000156891 #25	ENSGT00940000156005 #26	ENSGT00390000000083.a #28	ENSGT00390000013207 #27	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01010000222336.a.a.a.ob.a.b.f ##33	ENSGT01050000245403.b	ENSGT01010000222336.a.a.a.ob.a.b.e.a #32	ENSGT01010000222336.a.a.a.ob.b #33	ENSGT00390000016904.a.a ##35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098
Caprinae	ANCESTRAL SPECIES	11	ENSGT00390000018436.a.a #7	ENSGT00940000157547 #8	ENSGT00830000128402 #9	ENSGT00520000055955 #10	ENSGT00940000162712	ENSGT00940000161067	ENSGT00390000017666 #11	ENSGT00940000161472 #13	ENSGT00940000158243 #14	ENSGT00940000157417 #15	ENSGT00940000155944 #16	ENSGT00940000157159 #17	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #24	ENSGT00940000156891 #25	ENSGT00940000156005 #26	ENSGT00390000013207 #27	ENSGT00390000000083.a #28	ENSGT01010000222336.a.a.a.ob.a.a #31	ENSGT01050000245403.b	ENSGT01010000222336.a.a.a.ob.a.b.e.b #30	ENSGT01010000222336.a.a.a.ob.a.b.e.a #32	ENSGT01010000222336.a.a.a.ob.b #33	ENSGT00390000016904.a.a ##35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793	ENSGT00940000158098
Rambouillet Sheep	MODERN SPECIES	23	SMOC1 (ENSOARG00020004340) #7	SLC8A3 (ENSOARG00020004383) #8	ENSOARG00020004591 #9	ENSOARG00020004609 #10	MED6 (ENSOARG00020004653) #11	ENSOARG00020004754 #12	TTC9 (ENSOARG00020004790) #13	MAP3K9 (ENSOARG00020004823) #14	PCNX1 (ENSOARG00020004951) #15	SIPA1L1 (ENSOARG00020005315) #16	RGS6 (ENSOARG00020005779) #17	ENSOARG00020009866 #18	DPF3 (ENSOARG00020009903) #19	DCAF4 (ENSOARG00020010137) #20	ZFYVE1 (ENSOARG00020010565) #21	RBM25 (ENSOARG00020011125) #22	ENSOARG00020011255 #23	PSEN1 (ENSOARG00020011326) #24	PAPLN (ENSOARG00020011520) #25	NUMB (ENSOARG00020011742) #26	ENSOARG00020012105 #27	RIOX1 (ENSOARG00020012228) #28	ENSOARG00020012249 #29	ENSOARG00020012308 #30	ENSOARG00020012357 #31	ENSOARG00020012431 #32	ACOT6 (ENSOARG00020012471) #33	ENSOARG00020012528 #34	ENSOARG00020012555 #35	PNMA1 (ENSOARG00020012650) #36	MIDEAS (ENSOARG00020012681) #37
Goat	DUPLICATION
Goat	MODERN SPECIES	1	COX16 (ENSCHIG00000016082) #10	ADAM21 (ENSCHIG00000009441)	ADAM20 (ENSCHIG00000026951)	ENSCHIG00000011291 #12	MED6 (ENSCHIG00000024218) #11	TTC9 (ENSCHIG00000023182) #13	MAP3K9 (ENSCHIG00000016673) #14	PCNX1 (ENSCHIG00000026327) #15	SIPA1L1 (ENSCHIG00000020272) #16	RGS6 (ENSCHIG00000000519) #17	DPF3 (ENSCHIG00000024523) #19	ENSCHIG00000014966 #20	ZFYVE1 (ENSCHIG00000011591) #21	ENSCHIG00000021905 #22	ENSCHIG00000010764 ##23	ENSCHIG00000021190 #22	PSEN1 (ENSCHIG00000025284) #24	PAPLN (ENSCHIG00000018573) #25	ENSCHIG00000023603	NUMB (ENSCHIG00000017411) #26	RIOX1 (ENSCHIG00000024709) #28	ENSCHIG00000013624 #31	ENSCHIG00000022908	ENSCHIG00000008334 #30	HEATR4 (ENSCHIG00000016869) #27	ENSCHIG00000026395	ENSCHIG00000015407 #32	ENSCHIG00000025534 #33	ENSCHIG00000012677 ##35	PNMA1 (ENSCHIG00000005409) #36	MIDEAS (ENSCHIG00000025351) #37
Goat	MODERN SPECIES	1	SLC8A3 (ENSCHIG00000011087) #8	ENSCHIG00000022232 #9	COX16 (ENSCHIG00000016082) #10	ADAM21 (ENSCHIG00000009441)	ADAM20 (ENSCHIG00000026951)	ENSCHIG00000011291 #12	MED6 (ENSCHIG00000024218) #11	TTC9 (ENSCHIG00000023182) #13	MAP3K9 (ENSCHIG00000016673) #14	PCNX1 (ENSCHIG00000026327) #15	SIPA1L1 (ENSCHIG00000020272) #16	RGS6 (ENSCHIG00000000519) #17	DPF3 (ENSCHIG00000024523) #19	ENSCHIG00000014966 #20	ZFYVE1 (ENSCHIG00000011591) #21	ENSCHIG00000021905 #22	ENSCHIG00000010764 ##23	ENSCHIG00000021190 #22	PSEN1 (ENSCHIG00000025284) #24	PAPLN (ENSCHIG00000018573) #25	ENSCHIG00000023603	NUMB (ENSCHIG00000017411) #26	RIOX1 (ENSCHIG00000024709) #28	ENSCHIG00000013624 #31	ENSCHIG00000022908	ENSCHIG00000008334 #30	HEATR4 (ENSCHIG00000016869) #27	ENSCHIG00000026395	ENSCHIG00000015407 #32	ENSCHIG00000025534 #33	ENSCHIG00000012677 ##35
Bovinae	ANCESTRAL SPECIES	11	ENSGT00940000161933.f	ENSGT00940000161933.e	ENSGT00940000162712	ENSGT00940000161067	ENSGT00390000017666 #11	ENSGT00940000161472 #13	ENSGT00940000158243 #14	ENSGT00940000157417 #15	ENSGT00950000182878.b.a.c.a.a.b.p.b.b.b	ENSGT00940000155944 #16	ENSGT00940000157159 #17	ENSGT00950000183198.c.b.b.d	ENSGT00940000159153 #19	ENSGT00390000009546 #20	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #24	ENSGT00940000156891 #25	ENSGT00940000156005 #26	ENSGT00390000000083.a #28	ENSGT00390000013207 #27	ENSGT01010000222336.a.a.a.ob.a.a.q #31	ENSGT01010000222336.a.a.a.ob.a.b.f.b ##33	ENSGT01010000222336.a.a.a.ob.a.a.r #31	ENSGT01010000222336.a.a.a.ob.a.b.f.a ##33	ENSGT01010000222336.a.a.a.ob.b #33	ENSGT00390000016904.a.a ##35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793.e	ENSGT00940000158098
Bos	ANCESTRAL SPECIES	13	ENSGT00940000161933.e	ENSGT00940000162712	ENSGT00940000161067	ENSGT00390000017666 #11	ENSGT00940000161472 #13	ENSGT00940000158243 #14	ENSGT00940000157417 #15	ENSGT00950000182878.b.a.c.a.a.b.p.b.b.b	ENSGT00940000155944 #16	ENSGT00940000157159 #17	ENSGT00940000159153 #19	ENSGT00950000183198.c.a.a.a.a.c.b	ENSGT00390000009546 #20	ENSGT01100000263480.a.a.b.b.b.a.b.a.a.a.a.b.b	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #24	ENSGT00940000156891 #25	ENSGT00940000156005 #26	ENSGT00390000013207.a #27	ENSGT00390000000083.a #28	ENSGT00390000013207.b #27	ENSGT01010000222336.a.a.a.ob.a.a.q #31	ENSGT01010000222336.a.a.a.ob.a.b.f.b ##33	ENSGT01010000222336.a.a.a.ob.a.a.r #31	ENSGT01010000222336.a.a.a.ob.a.b.f.a ##33	ENSGT01010000222336.a.a.a.ob.a.b.e.a #32	ENSGT01010000222336.a.a.a.ob.b #33	ENSGT00390000016904.a.a ##35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37
Bos_b	ANCESTRAL SPECIES	11	ENSGT00940000161933.f	ENSGT00940000161933.e	ENSGT00940000162712	ENSGT00940000161067	ENSGT00390000017666 #11	ENSGT00940000161472 #13	ENSGT00940000158243 #14	ENSGT00940000157417 #15	ENSGT00940000155944 #16	ENSGT00940000157159 #17	ENSGT00940000159153 #19	ENSGT00950000183198.c.a.a.a.a.c.b	ENSGT00390000009546 #20	ENSGT01100000263480.a.a.b.b.b.a.b.a.a.a.a.b.b	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #24	ENSGT00940000156891 #25	ENSGT00940000156005 #26	ENSGT00390000000083.a #28	ENSGT00390000013207.b #27	ENSGT01010000222336.a.a.a.ob.a.a.q #31	ENSGT01010000222336.a.a.a.ob.a.b.e.b #30	ENSGT01010000222336.a.a.a.ob.a.a.r #31	ENSGT01010000222336.a.a.a.ob.a.b.e.a #32	ENSGT01010000222336.a.a.a.ob.b #33	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793.e	ENSGT00940000158098	ENSGT00940000159998
Hybrid Bos Indicus	MODERN SPECIES	1	ENSBIXG00005028980	ADAM21 (ENSBIXG00005028972)	MED6 (ENSBIXG00005005085) #11	ENSBIXG00005028916 #12	TTC9 (ENSBIXG00005028903) #13	MAP3K9 (ENSBIXG00005005038) #14	PCNX1 (ENSBIXG00005002329) #15	SIPA1L1 (ENSBIXG00005028352) #16	ENSBIXG00005028293	RGS6 (ENSBIXG00005028221) #17	DPF3 (ENSBIXG00005027707) #19	ENSBIXG00005027663	ENSBIXG00005027627 #20	ENSBIXG00005027433	ZFYVE1 (ENSBIXG00005027414) #21	RBM25 (ENSBIXG00005004710) #22	PSEN1 (ENSBIXG00005027250) #24	PAPLN (ENSBIXG00005027160) #25	NUMB (ENSBIXG00005027025) #26	HEATR4 (ENSBIXG00005004597) #27	RIOX1 (ENSBIXG00005026859) #28	ACOT4 (ENSBIXG00005026831) #32	ACOT6 (ENSBIXG00005026754) #33	PNMA1 (ENSBIXG00005026657) #36	MIDEAS (ENSBIXG00005026640) #37	ENSBIXG00005004549	ZNF410 (ENSBIXG00005026565)	FAM161B (ENSBIXG00005026463)	COQ6 (ENSBIXG00005026440)	ENTPD5 (ENSBIXG00005026381)	BBOF1 (ENSBIXG00005005787)
Cow	MODERN SPECIES	1	ADAM21 (ENSBTAG00000003715)	MED6 (ENSBTAG00000006786) #11	ADAM20 (ENSBTAG00000038377)	ENSBTAG00000052827 #12	TTC9 (ENSBTAG00000045604) #13	MAP3K9 (ENSBTAG00000005700) #14	PCNX1 (ENSBTAG00000012565) #15	ENSBTAG00000048690	SIPA1L1 (ENSBTAG00000015805) #16	ENSBTAG00000025385	RGS6 (ENSBTAG00000014189) #17	DPF3 (ENSBTAG00000025458) #19	ENSBTAG00000046952	DCAF4 (ENSBTAG00000008713) #20	ZFYVE1 (ENSBTAG00000011041) #21	RBM25 (ENSBTAG00000017177) #22	PSEN1 (ENSBTAG00000011757) #24	PAPLN (ENSBTAG00000011680) #25	NUMB (ENSBTAG00000011683) #26	HEATR4 (ENSBTAG00000002842) #27	RIOX1 (ENSBTAG00000025372) #28	ACOT2 (ENSBTAG00000046814) #31	ACOT4 (ENSBTAG00000002843) #30	ENSBTAG00000009788 #31	ENSBTAG00000010270 #32	DNAL1 (ENSBTAG00000015930) #33	ENSBTAG00000009783	PNMA1 (ENSBTAG00000009271) #36	MIDEAS (ENSBTAG00000009272) #37	PTGR2 (ENSBTAG00000003747)	ZNF410 (ENSBTAG00000020327)
Bos_a	ANCESTRAL SPECIES	1	ENSGT00940000162712	ENSGT00940000161067	ENSGT00390000017666 #11	ENSGT00940000161472 #13	ENSGT00940000158243 #14	ENSGT00940000157417 #15	ENSGT00950000182878.b.a.c.a.a.b.p.b.b.b	ENSGT00940000155944 #16	ENSGT00940000157159 #17	ENSGT00950000183198.c.b.b.d	ENSGT00940000159153 #19	ENSGT00950000183198.c.a.a.a.a.c.b	ENSGT00390000009546 #20	ENSGT01100000263480.a.a.b.b.b.a.b.a.a.a.a.b.b	ENSGT00390000016097 #21	ENSGT00730000111019 #22	ENSGT00940000158751 #24	ENSGT00940000156891 #25	ENSGT00940000156005 #26	ENSGT00390000013207.a #27	ENSGT00390000000083.a #28	ENSGT00390000013207.b #27	ENSGT01010000222336.a.a.a.ob.a.a.q #31	ENSGT01010000222336.a.a.a.ob.a.b.f.b ##33	ENSGT01010000222336.a.a.a.ob.a.a.r #31	ENSGT01010000222336.a.a.a.ob.a.b.f.a ##33	ENSGT01010000222336.a.a.a.ob.b #33	ENSGT00390000016904.a.a ##35	ENSGT01030000234522.C.b.e.b.a.a.a #36	ENSGT00940000157459 #37	ENSGT00940000156793.e
Domestic yak	MODERN SPECIES	2	ENSBGRG00000008867	ENSBGRG00000008921	ADAM21 (ENSBGRG00000008955)	MED6 (ENSBGRG00000008994) #11	TTC9 (ENSBGRG00000009323) #13	MAP3K9 (ENSBGRG00000009390) #14	PCNX1 (ENSBGRG00000009684) #15	ENSBGRG00000010436	SIPA1L1 (ENSBGRG00000010469) #16	RGS6 (ENSBGRG00000010823) #17	DPF3 (ENSBGRG00000013900) #19	ENSBGRG00000014383	ENSBGRG00000014407 #20	ENSBGRG00000014589	ZFYVE1 (ENSBGRG00000014619) #21	RBM25 (ENSBGRG00000014814) #22	ENSBGRG00000014962	PSEN1 (ENSBGRG00000015004) #24	PAPLN (ENSBGRG00000015385) #25	NUMB (ENSBGRG00000016469) #26	ENSBGRG00000016829 #27	RIOX1 (ENSBGRG00000016972) #28	ENSBGRG00000017051 #27	ENSBGRG00000017115 #31	ACOT6 (ENSBGRG00000017306) #33	ENSBGRG00000017382	ENSBGRG00000017419	ENSBGRG00000017483	ENSBGRG00000017562 ##35	PNMA1 (ENSBGRG00000017709) #36	MIDEAS (ENSBGRG00000017732) #37
Wild yak	MODERN SPECIES	605											RGS6 (ENSBMUG00000010121) #17	ENSBMUG00000009890	DPF3 (ENSBMUG00000009879) #19	ENSBMUG00000009848 #20	ZFYVE1 (ENSBMUG00000009820) #21	RBM25 (ENSBMUG00000009795) #22	PSEN1 (ENSBMUG00000009750) #24	PAPLN (ENSBMUG00000009643) #25	NUMB (ENSBMUG00000009175) #26	RIOX1 (ENSBMUG00000008961) #28	ENSBMUG00000008951 #27	ENSBMUG00000008918 #31	ENSBMUG00000008907 ##33	ENSBMUG00000008887 #31	ENSBMUG00000008879 ##33	ENSBMUG00000008872 #33	ENSBMUG00000008866	DNAL1 (ENSBMUG00000008848) ##35	PNMA1 (ENSBMUG00000008814) #36	MIDEAS (ENSBMUG00000008801) #37	PTGR2 (ENSBMUG00000008747)
American bison	MODERN SPECIES	3282	KRTAP13-3 (ENSBBBG00000012685)	ENSBBBG00000001820	ENSBBBG00000012701	ENSBBBG00000008108	ENSBBBG00000001818	KRTAP24-1 (ENSBBBG00000002451)	CLDN8 (ENSBBBG00000012718)	CLDN17 (ENSBBBG00000012722)	GRIK1 (ENSBBBG00000012874)	BACH1 (ENSBBBG00000012897)	RGS6 (ENSBBBG00000013128) #17	ENSBBBG00000013152	DPF3 (ENSBBBG00000013175) #19	ENSBBBG00000002672 #20	ZFYVE1 (ENSBBBG00000013262) #21	RBM25 (ENSBBBG00000002704) #22	PSEN1 (ENSBBBG00000001581) #24	PAPLN (ENSBBBG00000002766) #25	NUMB (ENSBBBG00000002909) #26	ENSBBBG00000002932 #27	ENSBBBG00000013743 #31	ENSBBBG00000007896 ##33	ENSBBBG00000002936 #31	ENSBBBG00000013752 ##33	ACOT6 (ENSBBBG00000013759) #33	DNAL1 (ENSBBBG00000013792) ##35	PNMA1 (ENSBBBG00000013798) #36	MIDEAS (ENSBBBG00000013823) #37	PTGR2 (ENSBBBG00000002974)	ZNF410 (ENSBBBG00000003035)	FAM161B (ENSBBBG00000013948)
Siberian musk deer	MODERN SPECIES	260	ENSMMSG00000016479	ENSMMSG00000016499	ADAM21 (ENSMMSG00000016525)	ENSMMSG00000016564	ENSMMSG00000016669	MED6 (ENSMMSG00000016803) #11	ENSMMSG00000017035 #12	TTC9 (ENSMMSG00000017056) #13	MAP3K9 (ENSMMSG00000017089) #14	PCNX1 (ENSMMSG00000017386) #15	SIPA1L1 (ENSMMSG00000017694) #16	RGS6 (ENSMMSG00000017838) #17	DPF3 (ENSMMSG00000019667) #19	ENSMMSG00000019774 #20	ZFYVE1 (ENSMMSG00000019863) #21	RBM25 (ENSMMSG00000019940) #22	PSEN1 (ENSMMSG00000019994) #24	PAPLN (ENSMMSG00000020113) #25	NUMB (ENSMMSG00000020223) #26	ENSMMSG00000020471 #27	RIOX1 (ENSMMSG00000020569) #28	ENSMMSG00000020582 #31	ENSMMSG00000020621 ##33	ENSMMSG00000020634	ENSMMSG00000020660 #32	ACOT6 (ENSMMSG00000020688) #33	DNAL1 (ENSMMSG00000020722) #35	PNMA1 (ENSMMSG00000020797) #36	MIDEAS (ENSMMSG00000020815) #37	PTGR2 (ENSMMSG00000020873)	ZNF410 (ENSMMSG00000020927)