Murinae	ANCESTRAL SPECIES	1	ENSGT00940000157226.f #7	ENSGT00940000154860 #8	ENSGT00390000006196 #9	ENSGT00390000010991 #10	ENSGT00940000157405 #11	ENSGT00390000013149 #12	ENSGT00390000012559 #13	ENSGT00390000008679 #14	ENSGT00940000155426 #15	ENSGT00530000063981.b #16	ENSGT00390000006218 #17	ENSGT00940000160574 #18	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #23	ENSGT00940000156046 #24	ENSGT00390000001680 #25	ENSGT00940000159310 #26	ENSGT00940000160980 #27	ENSGT00390000018100 #28	ENSGT00940000157661 #29	ENSGT00390000009140 #30	ENSGT00940000153438.a #31	ENSGT00940000160199 #32	ENSGT00940000153571.b #34	ENSGT00390000016309	ENSGT00390000002169 #35	ENSGT00530000063472.b.b.a.b #36	ENSGT00940000155960.b #37
Mus	ANCESTRAL SPECIES	1	ENSGT00940000157226.f #7	ENSGT00940000154860 #8	ENSGT00390000006196 #9	ENSGT00390000010991 #10	ENSGT00940000157405 #11	ENSGT00390000013149 #12	ENSGT00390000012559 #13	ENSGT00390000008679 #14	ENSGT00940000155426 #15	ENSGT00530000063981.b #16	ENSGT00390000006218 #17	ENSGT00940000160574 #18	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #23	ENSGT00940000156046 #24	ENSGT00390000001680 #25	ENSGT00940000159310 #26	ENSGT00940000160980 #27	ENSGT00390000018100 #28	ENSGT00940000157661 #29	ENSGT00390000009140 #30	ENSGT00940000153438.a #31	ENSGT00940000160199 #32	ENSGT00940000153571.b #34	ENSGT00390000016309.j	ENSGT00390000002169 #35	ENSGT00530000063472.b.b.a.b #36	ENSGT00940000155960.b #37
Mus_A	ANCESTRAL SPECIES		ENSGT00940000157226.f #7	ENSGT00940000154860 #8	ENSGT00390000006196 #9	ENSGT00390000010991 #10	ENSGT00940000157405 #11	ENSGT00390000013149 #12	ENSGT00390000012559 #13	ENSGT00390000008679 #14	ENSGT00940000155426 #15	ENSGT00530000063981.b #16	ENSGT00390000006218 #17	ENSGT00940000160574 #18	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #23	ENSGT00940000156046 #24	ENSGT00390000001680 #25	ENSGT00940000159310 #26	ENSGT00940000160980 #27	ENSGT00390000018100 #28	ENSGT00940000157661 #29	ENSGT00390000009140 #30	ENSGT00940000153438.a #31	ENSGT00940000160199 #32	ENSGT00860000136352 #33	ENSGT00940000153571.b #34	ENSGT00390000016309.j	ENSGT00390000002169 #35	ENSGT00530000063472.b.b.a.b #36
Ryukyu mouse	MODERN SPECIES	11	Alkbh3 (MGP_CAROLIEiJ_G0023995) #7	MGP_CAROLIEiJ_G0023996 #8	Ttc17 (MGP_CAROLIEiJ_G0023997) #9	Api5 (MGP_CAROLIEiJ_G0023998) #10	Lrrc4c (MGP_CAROLIEiJ_G0023999) #11	Iftap (MGP_CAROLIEiJ_G0024000) #12	Rag2 (MGP_CAROLIEiJ_G0024001) #13	Rag1 (MGP_CAROLIEiJ_G0024002) #14	Traf6 (MGP_CAROLIEiJ_G0024003) #15	Prr5l (MGP_CAROLIEiJ_G0024004) #16	Commd9 (MGP_CAROLIEiJ_G0024005) #17	Ldlrad3 (MGP_CAROLIEiJ_G0024006) #18	Trim44 (MGP_CAROLIEiJ_G0024007) #19	Fjx1 (MGP_CAROLIEiJ_G0024008) #20	Pamr1 (MGP_CAROLIEiJ_G0024009) #21	Slc1a2 (MGP_CAROLIEiJ_G0024010) #22	Cd44 (MGP_CAROLIEiJ_G0024011) #23	Pdhx (MGP_CAROLIEiJ_G0024012) #24	Apip (MGP_CAROLIEiJ_G0024013) #25	Ehf (MGP_CAROLIEiJ_G0024014) #26	Elf5 (MGP_CAROLIEiJ_G0024015) #27	Cat (MGP_CAROLIEiJ_G0024016) #28	Abtb2 (MGP_CAROLIEiJ_G0024017) #29	MGP_CAROLIEiJ_G0024018 #30	Caprin1 (MGP_CAROLIEiJ_G0024019) #31	Lmo2 (MGP_CAROLIEiJ_G0024020) #32	MGP_CAROLIEiJ_G0024021 #33	Fbxo3 (MGP_CAROLIEiJ_G0024022) #34	A930018P22Rik (MGP_CAROLIEiJ_G0024023) #35	MGP_CAROLIEiJ_G0024024 #36	Hipk3 (MGP_CAROLIEiJ_G0024025) #37
Mus_B	ANCESTRAL SPECIES	1	ENSGT00940000157226.f #7	ENSGT00940000154860 #8	ENSGT00390000006196 #9	ENSGT00390000010991 #10	ENSGT00940000157405 #11	ENSGT00390000013149 #12	ENSGT00390000012559 #13	ENSGT00390000008679 #14	ENSGT00940000155426 #15	ENSGT00530000063981.b #16	ENSGT00390000006218 #17	ENSGT00940000160574 #18	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #23	ENSGT00940000156046 #24	ENSGT00390000001680 #25	ENSGT00940000159310 #26	ENSGT00940000160980 #27	ENSGT00390000018100 #28	ENSGT00940000157661 #29	ENSGT00390000009140 #30	ENSGT00940000153438.a #31	ENSGT00940000160199 #32	ENSGT00860000136352 #33	ENSGT00940000153571.b #34	ENSGT00390000016309.j	ENSGT00390000002169 #35	ENSGT00530000063472.b.b.a.b #36
Mouse	MODERN SPECIES	11	Alkbh3 (ENSMUSG00000040174) #7	Hsd17b12 (ENSMUSG00000027195) #8	Ttc17 (ENSMUSG00000027194) #9	Api5 (ENSMUSG00000027193) #10	Lrrc4c (ENSMUSG00000050587) #11	Iftap (ENSMUSG00000027165) #12	Rag2 (ENSMUSG00000032864) #13	Rag1 (ENSMUSG00000061311) #14	Traf6 (ENSMUSG00000027164) #15	Prr5l (ENSMUSG00000032841) #16	Commd9 (ENSMUSG00000027163) #17	Ldlrad3 (ENSMUSG00000048058) #18	Trim44 (ENSMUSG00000027189) #19	Fjx1 (ENSMUSG00000075012) #20	Pamr1 (ENSMUSG00000027188) #21	Slc1a2 (ENSMUSG00000005089) #22	Cd44 (ENSMUSG00000005087) #23	Pdhx (ENSMUSG00000010914) #24	Apip (ENSMUSG00000010911) #25	Ehf (ENSMUSG00000012350) #26	Elf5 (ENSMUSG00000027186) #27	Cat (ENSMUSG00000027187) #28	Abtb2 (ENSMUSG00000032724) #29	Nat10 (ENSMUSG00000027185) #30	Caprin1 (ENSMUSG00000027184) #31	Lmo2 (ENSMUSG00000032698) #32	Fbxo3 (ENSMUSG00000027180) #34	Cd59b (ENSMUSG00000068686)	Cd59a (ENSMUSG00000032679)	A930018P22Rik (ENSMUSG00000032671) #35	D430041D05Rik (ENSMUSG00000068373) #36
Mus_C	ANCESTRAL SPECIES		ENSGT00940000157226.f #7	ENSGT00940000154860 #8	ENSGT00390000006196 #9	ENSGT00390000010991 #10	ENSGT00940000157405 #11	ENSGT00390000013149 #12	ENSGT00390000012559 #13	ENSGT00390000008679 #14	ENSGT00940000155426 #15	ENSGT00530000063981.b #16	ENSGT00390000006218 #17	ENSGT00940000160574 #18	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #23	ENSGT00940000156046 #24	ENSGT00390000001680 #25	ENSGT00940000159310 #26	ENSGT00940000160980 #27	ENSGT00390000018100 #28	ENSGT00940000157661 #29	ENSGT00390000009140 #30	ENSGT00940000153438.a #31	ENSGT00940000160199 #32	ENSGT00860000136352 #33	ENSGT00940000153571.b #34	ENSGT00390000016309.j	ENSGT00390000002169 #35	ENSGT00530000063472.b.b.a.b #36
Steppe mouse	MODERN SPECIES	12					Iftap (ENSMSIG00000004799) #12	Rag2 (ENSMSIG00000004837) #13	Rag1 (ENSMSIG00000004846) #14	Traf6 (ENSMSIG00000004857) #15	Prr5l (ENSMSIG00000004870) #16	Commd9 (ENSMSIG00000004921) #17	Ldlrad3 (ENSMSIG00000004965) #18	ENSMSIG00000004991	Trim44 (ENSMSIG00000005008) #19	Fjx1 (ENSMSIG00000005059) #20	Pamr1 (ENSMSIG00000005073) #21	Slc1a2 (ENSMSIG00000005100) #22	Cd44 (ENSMSIG00000005261) #23	Pdhx (ENSMSIG00000006094) #24	ENSMSIG00000006147 #25	Ehf (ENSMSIG00000006198) #26	Elf5 (ENSMSIG00000006297) #27	Cat (ENSMSIG00000006347) #28	Abtb2 (ENSMSIG00000006424) #29	ENSMSIG00000006529	Nat10 (ENSMSIG00000006539) #30	Caprin1 (ENSMSIG00000006606) #31	Lmo2 (ENSMSIG00000006713) #32	ENSMSIG00000006746 #33	Fbxo3 (ENSMSIG00000006767) #34
spretus	MODERN SPECIES	11	Alkbh3 (MGP_SPRETEiJ_G0024905) #7	Hsd17b12 (MGP_SPRETEiJ_G0024906) #8	Ttc17 (MGP_SPRETEiJ_G0024907) #9	Api5 (MGP_SPRETEiJ_G0024908) #10	Lrrc4c (MGP_SPRETEiJ_G0024909) #11	Iftap (MGP_SPRETEiJ_G0024910) #12	Rag2 (MGP_SPRETEiJ_G0024911) #13	Rag1 (MGP_SPRETEiJ_G0024912) #14	Traf6 (MGP_SPRETEiJ_G0024913) #15	Prr5l (MGP_SPRETEiJ_G0024914) #16	Commd9 (MGP_SPRETEiJ_G0024915) #17	Ldlrad3 (MGP_SPRETEiJ_G0024916) #18	Trim44 (MGP_SPRETEiJ_G0024917) #19	Fjx1 (MGP_SPRETEiJ_G0024918) #20	Pamr1 (MGP_SPRETEiJ_G0024919) #21	Slc1a2 (MGP_SPRETEiJ_G0024920) #22	Cd44 (MGP_SPRETEiJ_G0024921) #23	Pdhx (MGP_SPRETEiJ_G0024922) #24	Apip (MGP_SPRETEiJ_G0024923) #25	Ehf (MGP_SPRETEiJ_G0024924) #26	Elf5 (MGP_SPRETEiJ_G0024925) #27	Cat (MGP_SPRETEiJ_G0024926) #28	Abtb2 (MGP_SPRETEiJ_G0024927) #29	Nat10 (MGP_SPRETEiJ_G0024928) #30	Caprin1 (MGP_SPRETEiJ_G0024929) #31	Lmo2 (MGP_SPRETEiJ_G0024930) #32	MGP_SPRETEiJ_G0024931 #33	Fbxo3 (MGP_SPRETEiJ_G0024932) #34	Cd59a (MGP_SPRETEiJ_G0024933)	A930018P22Rik (MGP_SPRETEiJ_G0024935) #35	D430041D05Rik (MGP_SPRETEiJ_G0024936) #36
Shrew mouse	MODERN SPECIES	16	Alkbh3 (MGP_PahariEiJ_G0025431) #7	Hsd17b12 (MGP_PahariEiJ_G0025432) #8	Ttc17 (MGP_PahariEiJ_G0025433) #9	Api5 (MGP_PahariEiJ_G0025434) #10	Lrrc4c (MGP_PahariEiJ_G0025435) #11	MGP_PahariEiJ_G0025436 #12	Rag2 (MGP_PahariEiJ_G0025437) #13	Rag1 (MGP_PahariEiJ_G0025438) #14	Traf6 (MGP_PahariEiJ_G0025439) #15	Prr5l (MGP_PahariEiJ_G0025440) #16	Commd9 (MGP_PahariEiJ_G0025441) #17	Ldlrad3 (MGP_PahariEiJ_G0025442) #18	Trim44 (MGP_PahariEiJ_G0025443) #19	Fjx1 (MGP_PahariEiJ_G0025444) #20	Pamr1 (MGP_PahariEiJ_G0025445) #21	Slc1a2 (MGP_PahariEiJ_G0025446) #22	Cd44 (MGP_PahariEiJ_G0025447) #23	Pdhx (MGP_PahariEiJ_G0025448) #24	Apip (MGP_PahariEiJ_G0025449) #25	Ehf (MGP_PahariEiJ_G0025450) #26	Elf5 (MGP_PahariEiJ_G0025451) #27	Cat (MGP_PahariEiJ_G0025452) #28	Abtb2 (MGP_PahariEiJ_G0025453) #29	Nat10 (MGP_PahariEiJ_G0025454) #30	Caprin1 (MGP_PahariEiJ_G0025455) #31	Lmo2 (MGP_PahariEiJ_G0025456) #32	MGP_PahariEiJ_G0025457	Fbxo3 (MGP_PahariEiJ_G0025458) #34	MGP_PahariEiJ_G0025459	MGP_PahariEiJ_G0025460	A930018P22Rik (MGP_PahariEiJ_G0025461) #35
Rat	MODERN SPECIES	13	ENSRNOG00000066316	Lrrc4c (ENSRNOG00000029798) #11	AABR07053065.1 (ENSRNOG00000004381)	LOC499843 (ENSRNOG00000032177)	Iftap (ENSRNOG00000037567) #12	Rag2 (ENSRNOG00000004623) #13	Rag1 (ENSRNOG00000004630) #14	Traf6 (ENSRNOG00000004639) #15	Prr5l (ENSRNOG00000004666) #16	Commd9 (ENSRNOG00000004755) #17	Ldlrad3 (ENSRNOG00000058157) #18	Rpl21 (ENSRNOG00000069969)	Trim44 (ENSRNOG00000005191) #19	Fjx1 (ENSRNOG00000005347) #20	Pamr1 (ENSRNOG00000005348) #21	Slc1a2 (ENSRNOG00000005479) #22	Cd44 (ENSRNOG00000006094) #23	Pdhx (ENSRNOG00000006947) #24	Apip (ENSRNOG00000007446) #25	Ehf (ENSRNOG00000007484) #26	Elf5 (ENSRNOG00000008282) #27	Cat (ENSRNOG00000008364) #28	Abtb2 (ENSRNOG00000008510) #29	Nat10 (ENSRNOG00000008663) #30	Caprin1 (ENSRNOG00000009152) #31	ENSRNOG00000063191	Lmo2 (ENSRNOG00000009401) #32	Fbxo3 (ENSRNOG00000009549) #34	Cd59 (ENSRNOG00000042821)	RGD1563222 (ENSRNOG00000010963) #35	LOC100362814 (ENSRNOG00000011132) #36