Euarchontoglires	ANCESTRAL SPECIES	1	ENSGT00940000154860	ENSGT00520000059086	ENSGT00390000006196 #7	ENSGT00390000010991 #8	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426 #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a #33	ENSGT00860000135900	ENSGT00940000160199 #34	ENSGT00940000153571.b #36	ENSGT00390000016309 #37	ENSGT00390000002169	ENSGT00530000063472.b.b.a.b
Primates	ANCESTRAL SPECIES		ENSGT00940000154860	ENSGT00520000059086	ENSGT00390000006196 #7	ENSGT00390000010991 #8	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426 #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a #33	ENSGT00860000135900	ENSGT00940000160199 #34	ENSGT00940000153571.b #36	ENSGT00390000016309 #37	ENSGT00390000002169	ENSGT00530000063472.b.b.a.b
Haplorrhini	ANCESTRAL SPECIES		ENSGT00940000154860	ENSGT00520000059086	ENSGT00390000006196 #7	ENSGT00390000010991 #8	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426 #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a #33	ENSGT00860000135900	ENSGT00940000160199 #34	ENSGT00940000153571.b #36	ENSGT00390000016309 #37	ENSGT00390000002169	ENSGT00530000063472.b.b.a.b
Simiiformes	ANCESTRAL SPECIES		ENSGT00520000059086	ENSGT00390000006196 #7	ENSGT00950000183087.A.b.a	ENSGT00390000010991 #8	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426 #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00910000147087 #23	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a #33	ENSGT00860000135900	ENSGT00940000160199 #34	ENSGT00940000153571.b #36	ENSGT00390000016309 #37	ENSGT00390000002169
Catarrhini	ANCESTRAL SPECIES	1	ENSGT00520000059086	ENSGT00390000006196 #7	ENSGT00950000183087.A.b.a	ENSGT00390000010991.e #8	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426.s #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00910000147087 #23	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a #33	ENSGT00860000135900	ENSGT00940000160199 #34	ENSGT00940000153571.b #36	ENSGT00390000016309 #37	ENSGT00390000002169
Hominoidea	ANCESTRAL SPECIES	1	ENSGT00390000006196 #7	ENSGT00390000010991.e #8	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426.s #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00940000153309.c.b.a.b.b.a.b.b #17	ENSGT00910000147182 #18	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00910000147087 #23	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a #33	ENSGT00860000135900	ENSGT00940000160199 #34	ENSGT00940000155067.a.a.a #35	ENSGT00940000153571.b #36	ENSGT00390000016309 #37
Gibbon	MODERN SPECIES	5	TTC17 (ENSNLEG00000017958) #7	API5 (ENSNLEG00000017956) #8	LRRC4C (ENSNLEG00000017955) #9	IFTAP (ENSNLEG00000017953) #10	RAG2 (ENSNLEG00000017952) #11	RAG1 (ENSNLEG00000017951) #12	TRAF6 (ENSNLEG00000017949) #13	PRR5L (ENSNLEG00000017945) #14	COMMD9 (ENSNLEG00000017943) #15	LDLRAD3 (ENSNLEG00000017940) #16	ENSNLEG00000033071 #17	ENSNLEG00000034033 #18	TRIM44 (ENSNLEG00000017939) #19	FJX1 (ENSNLEG00000018184) #20	PAMR1 (ENSNLEG00000017937) #21	SLC1A2 (ENSNLEG00000032279) #22	ENSNLEG00000031295 #23	CD44 (ENSNLEG00000017932) #24	PDHX (ENSNLEG00000017930) #25	APIP (ENSNLEG00000028265) #26	EHF (ENSNLEG00000017927) #27	ELF5 (ENSNLEG00000017925) #28	CAT (ENSNLEG00000017922) #29	ENSNLEG00000027640 #30	ENSNLEG00000017921 #31	NAT10 (ENSNLEG00000017916) #32	CAPRIN1 (ENSNLEG00000017913) #33	LMO2 (ENSNLEG00000028429) #34	ENSNLEG00000018183 #35	FBXO3 (ENSNLEG00000017908) #36	ENSNLEG00000027673 #37
Hominidae	ANCESTRAL SPECIES	1	ENSGT00390000006196 #7	ENSGT00390000010991.e #8	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426.s #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00940000153309.c.b.a.b.b.a.b.b #17	ENSGT00910000147182 #18	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00910000147087 #23	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a #33	ENSGT00860000135900	ENSGT00940000160199 #34	ENSGT00940000155067.a.a.a #35	ENSGT00940000153571.b #36	ENSGT00390000016309 #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	20	ENSGT00390000006196 #7	ENSGT00390000010991.e #8	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426.s #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00940000153309.c.b.a.b.b.a.b.b #17	ENSGT00910000147182 #18	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00910000147087 #23	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a #33	ENSGT00860000135900	ENSGT00940000160199 #34	ENSGT00940000155067.a.a.a #35	ENSGT00940000153571.b #36	ENSGT00390000016309 #37
Homo/Pan group	ANCESTRAL SPECIES	1	ENSGT00940000154860.q	ENSGT00940000154430.e.b	ENSGT00390000006196 #7	ENSGT00390000010991.e #8	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426.s #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00910000147087 #23	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a #33	ENSGT00860000135900	ENSGT00940000160199 #34	ENSGT00940000155067.a.a.a #35	ENSGT00940000153571.b #36	ENSGT00390000016309 #37
Pan	ANCESTRAL SPECIES	1	ENSGT00940000154430.e.b	ENSGT00390000006196 #7	ENSGT00390000010991.e #8	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426.s #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00940000153309.c.b.a.b.b.a.b.b #17	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00910000147087 #23	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a #33	ENSGT00860000135900	ENSGT00940000160199 #34	ENSGT00940000155067.a.a.a #35	ENSGT00940000153571.b #36	ENSGT00390000016309 #37
Bonobo	MODERN SPECIES	2	ENSPPAG00000035030	TTC17 (ENSPPAG00000036754) #7	API5 (ENSPPAG00000035313) #8	LRRC4C (ENSPPAG00000005583) #9	IFTAP (ENSPPAG00000024881) #10	RAG2 (ENSPPAG00000004799) #11	RAG1 (ENSPPAG00000043768) #12	TRAF6 (ENSPPAG00000042961) #13	PRR5L (ENSPPAG00000042360) #14	COMMD9 (ENSPPAG00000036714) #15	LDLRAD3 (ENSPPAG00000025202) #16	ENSPPAG00000034541 #17	TRIM44 (ENSPPAG00000002641) #19	ENSPPAG00000041553 #20	PAMR1 (ENSPPAG00000025516) #21	SLC1A2 (ENSPPAG00000030524) #22	ENSPPAG00000037465 #23	CD44 (ENSPPAG00000043653) #24	PDHX (ENSPPAG00000030642) #25	ENSPPAG00000034280 #26	EHF (ENSPPAG00000035904) #27	ELF5 (ENSPPAG00000031806) #28	CAT (ENSPPAG00000039204) #29	ABTB2 (ENSPPAG00000039240) #31	NAT10 (ENSPPAG00000036069) #32	CAPRIN1 (ENSPPAG00000016974) #33	ENSPPAG00000038435	ENSPPAG00000036263 #34	ENSPPAG00000016006 #35	FBXO3 (ENSPPAG00000032146) #36	CD59 (ENSPPAG00000036733) #37
Chimpanzee	MODERN SPECIES	2	ENSPTRG00000048907	TTC17 (ENSPTRG00000003518) #7	API5 (ENSPTRG00000003516) #8	LRRC4C (ENSPTRG00000003515) #9	IFTAP (ENSPTRG00000003514) #10	RAG2 (ENSPTRG00000003513) #11	RAG1 (ENSPTRG00000050436) #12	TRAF6 (ENSPTRG00000003510) #13	PRR5L (ENSPTRG00000003509) #14	COMMD9 (ENSPTRG00000049063) #15	LDLRAD3 (ENSPTRG00000003507) #16	ENSPTRG00000044139 #17	TRIM44 (ENSPTRG00000003504) #19	FJX1 (ENSPTRG00000041394) #20	PAMR1 (ENSPTRG00000003503) #21	SLC1A2 (ENSPTRG00000003502) #22	ENSPTRG00000048633 #23	CD44 (ENSPTRG00000003501) #24	PDHX (ENSPTRG00000003500) #25	APIP (ENSPTRG00000003499) #26	EHF (ENSPTRG00000003498) #27	ELF5 (ENSPTRG00000003497) #28	CAT (ENSPTRG00000003496) #29	ABTB2 (ENSPTRG00000003495) #31	NAT10 (ENSPTRG00000003494) #32	CAPRIN1 (ENSPTRG00000003493) #33	ENSPTRG00000003492	LMO2 (ENSPTRG00000003491) #34	ENSPTRG00000047371 #35	FBXO3 (ENSPTRG00000003490) #36	CD59 (ENSPTRG00000003489)
Human	MODERN SPECIES	2	ALKBH3 (ENSG00000166199)	HSD17B12 (ENSG00000149084)	TTC17 (ENSG00000052841) #7	API5 (ENSG00000166181) #8	LRRC4C (ENSG00000148948) #9	IFTAP (ENSG00000166352) #10	RAG2 (ENSG00000175097) #11	RAG1 (ENSG00000166349) #12	TRAF6 (ENSG00000175104) #13	PRR5L (ENSG00000135362) #14	COMMD9 (ENSG00000110442) #15	LDLRAD3 (ENSG00000179241) #16	TRIM44 (ENSG00000166326) #19	FJX1 (ENSG00000179431) #20	PAMR1 (ENSG00000149090) #21	SLC1A2 (ENSG00000110436) #22	CD44 (ENSG00000026508) #24	PDHX (ENSG00000110435) #25	APIP (ENSG00000149089) #26	EHF (ENSG00000135373) #27	ELF5 (ENSG00000135374) #28	CAT (ENSG00000121691) #29	ABTB2 (ENSG00000166016) #31	NAT10 (ENSG00000135372) #32	CAPRIN1 (ENSG00000135387) #33	LMO2 (ENSG00000135363) #34	FBXO3 (ENSG00000110429) #36	CD59 (ENSG00000085063) #37	ENSG00000284969	C11orf91 (ENSG00000205177)	KIAA1549L (ENSG00000110427)
Gorilla	MODERN SPECIES	2	API5 (ENSGGOG00000002358) #8	LRRC4C (ENSGGOG00000006776) #9	ENSGGOG00000024548	IFTAP (ENSGGOG00000004773) #10	RAG2 (ENSGGOG00000027505) #11	RAG1 (ENSGGOG00000041736) #12	TRAF6 (ENSGGOG00000005854) #13	PRR5L (ENSGGOG00000008909) #14	COMMD9 (ENSGGOG00000012472) #15	LDLRAD3 (ENSGGOG00000016627) #16	ENSGGOG00000024203 #17	ENSGGOG00000037454 #18	TRIM44 (ENSGGOG00000004970) #19	FJX1 (ENSGGOG00000026577) #20	PAMR1 (ENSGGOG00000014257) #21	SLC1A2 (ENSGGOG00000041651) #22	ENSGGOG00000043068 #23	CD44 (ENSGGOG00000000851) #24	PDHX (ENSGGOG00000001206) #25	APIP (ENSGGOG00000022940) #26	EHF (ENSGGOG00000006149) #27	ELF5 (ENSGGOG00000006882) #28	CAT (ENSGGOG00000010662) #29	ABTB2 (ENSGGOG00000014588) #31	NAT10 (ENSGGOG00000014560) #32	CAPRIN1 (ENSGGOG00000010997) #33	LMO2 (ENSGGOG00000024903) #34	ENSGGOG00000042559 #35	FBXO3 (ENSGGOG00000001949) #36	ENSGGOG00000041311 #37	KIAA1549L (ENSGGOG00000004207)
Orangutan	MODERN SPECIES	2	ALKBH3 (ENSPPYG00000003342)	HSD17B12 (ENSPPYG00000003343)	TTC17 (ENSPPYG00000003344) #7	API5 (ENSPPYG00000003345) #8	LRRC4C (ENSPPYG00000003346) #9	IFTAP (ENSPPYG00000003347) #10	RAG2 (ENSPPYG00000003348) #11	RAG1 (ENSPPYG00000034216) #12	TRAF6 (ENSPPYG00000003350) #13	PRR5L (ENSPPYG00000003351) #14	COMMD9 (ENSPPYG00000003352) #15	LDLRAD3 (ENSPPYG00000003354) #16	TRIM44 (ENSPPYG00000003355) #19	FJX1 (ENSPPYG00000038455) #20	PAMR1 (ENSPPYG00000003356) #21	SLC1A2 (ENSPPYG00000003357) #22	CD44 (ENSPPYG00000032340) #24	PDHX (ENSPPYG00000003360) #25	APIP (ENSPPYG00000003361) #26	ENSPPYG00000034760	EHF (ENSPPYG00000003362) #27	ELF5 (ENSPPYG00000003363) #28	CAT (ENSPPYG00000003364) #29	ABTB2 (ENSPPYG00000003365) #31	NAT10 (ENSPPYG00000003367) #32	CAPRIN1 (ENSPPYG00000029386) #33	LMO2 (ENSPPYG00000003368) #34	FBXO3 (ENSPPYG00000003369) #36	CD59 (ENSPPYG00000003370) #37	C11orf91 (ENSPPYG00000038055)	KIAA1549L (ENSPPYG00000003373)
Cercopithecidae	ANCESTRAL SPECIES		ENSGT00520000059086	ENSGT00390000006196 #7	ENSGT00950000183087.A.b.a	ENSGT00390000010991.e #8	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426.s #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00910000147087 #23	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a #33	ENSGT00860000135900	ENSGT00940000160199 #34	ENSGT00940000153571.b #36	ENSGT00390000016309 #37	ENSGT00390000002169
Cercopithecinae	ANCESTRAL SPECIES	3	ENSGT00940000154430.e.b	ENSGT00520000059086	ENSGT00390000006196 #7	ENSGT00390000010991.e #8	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426.s #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00910000147087 #23	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a #33	ENSGT00860000135900	ENSGT00940000160199 #34	ENSGT00940000153571.b #36	ENSGT00390000016309 #37	ENSGT00390000002169
Vervet Monkey	MODERN SPECIES		TTC17 (ENSCSAG00000005526) #7	API5 (ENSCSAG00000005506) #8	LRRC4C (ENSCSAG00000019212) #9	ENSCSAG00000005494	IFTAP (ENSCSAG00000005492) #10	RAG2 (ENSCSAG00000019213) #11	RAG1 (ENSCSAG00000005489) #12	TRAF6 (ENSCSAG00000005486) #13	PRR5L (ENSCSAG00000005478) #14	COMMD9 (ENSCSAG00000005477) #15	ENSCSAG00000019214	LDLRAD3 (ENSCSAG00000005472) #16	TRIM44 (ENSCSAG00000005470) #19	FJX1 (ENSCSAG00000019315) #20	PAMR1 (ENSCSAG00000005463) #21	SLC1A2 (ENSCSAG00000005437) #22	CD44 (ENSCSAG00000005433) #24	PDHX (ENSCSAG00000005431) #25	APIP (ENSCSAG00000005426) #26	EHF (ENSCSAG00000005424) #27	ELF5 (ENSCSAG00000005423) #28	CAT (ENSCSAG00000005418) #29	ABTB2 (ENSCSAG00000005406) #31	NAT10 (ENSCSAG00000005383) #32	CAPRIN1 (ENSCSAG00000005378) #33	LMO2 (ENSCSAG00000005369) #34	FBXO3 (ENSCSAG00000005366) #36	CD59 (ENSCSAG00000005360) #37	C11orf91 (ENSCSAG00000005348)	KIAA1549L (ENSCSAG00000005316)	HIPK3 (ENSCSAG00000005298)
Cercopithecinae_a	ANCESTRAL SPECIES	2	ENSGT00390000010991.e #8	ENSGT00910000147254	ENSGT00940000157405 #9	ENSGT00390000009130.a.a.a.b	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426.s #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00910000147182 #18	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00910000147087 #23	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a #33	ENSGT00860000135900	ENSGT00940000160199 #34	ENSGT00940000153571.b #36	ENSGT00390000016309 #37	ENSGT00390000002169
Macaca	ANCESTRAL SPECIES	2	ENSGT00390000010991.e #8	ENSGT00910000147254	ENSGT00940000157405 #9	ENSGT00390000009130.a.a.a.b	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426.s #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00910000147182 #18	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00910000147087 #23	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a #33	ENSGT00940000160199 #34	ENSGT00940000153571.b #36	ENSGT00390000016309 #37	ENSGT00390000002169	ENSGT00530000063472.b.b.a.b
Pig-tailed macaque	MODERN SPECIES	485	ENSMNEG00000013022	ENSMNEG00000008856	LRRC4C (ENSMNEG00000017892) #9	ENSMNEG00000032979	IFTAP (ENSMNEG00000044678) #10	RAG2 (ENSMNEG00000022173) #11	RAG1 (ENSMNEG00000007591) #12	TRAF6 (ENSMNEG00000042176) #13	PRR5L (ENSMNEG00000043138) #14	COMMD9 (ENSMNEG00000030213) #15	LDLRAD3 (ENSMNEG00000037863) #16	ENSMNEG00000045218 #18	TRIM44 (ENSMNEG00000039165) #19	FJX1 (ENSMNEG00000021210) #20	PAMR1 (ENSMNEG00000038968) #21	SLC1A2 (ENSMNEG00000033227) #22	ENSMNEG00000027059 #23	CD44 (ENSMNEG00000024975) #24	PDHX (ENSMNEG00000041540) #25	APIP (ENSMNEG00000037577) #26	EHF (ENSMNEG00000035998) #27	ELF5 (ENSMNEG00000036605) #28	CAT (ENSMNEG00000043629) #29	ENSMNEG00000043168 #30	ABTB2 (ENSMNEG00000011772) #31	NAT10 (ENSMNEG00000041284) #32	CAPRIN1 (ENSMNEG00000030485) #33	LMO2 (ENSMNEG00000031732) #34	FBXO3 (ENSMNEG00000045464) #36	C11orf91 (ENSMNEG00000033587)	KIAA1549L (ENSMNEG00000040724)
Macaca_a	ANCESTRAL SPECIES	3	ENSGT00390000006196 #7	ENSGT00390000010991.e #8	ENSGT00910000147254	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426.s #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT01030000240096	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a #33	ENSGT00940000165497.F.b.b.a.b.a	ENSGT00940000160199 #34	ENSGT00940000153571.b #36	ENSGT00390000016309 #37	ENSGT00530000063472.b.b.a.b	ENSGT00940000155960.b
Crab-eating macaque	MODERN SPECIES	5	ENSMFAG00000050969	ENSMFAG00000063906	LRRC4C (ENSMFAG00000030573) #9	ENSMFAG00000038539	ENSMFAG00000051896	IFTAP (ENSMFAG00000001278) #10	RAG2 (ENSMFAG00000029426) #11	RAG1 (ENSMFAG00000011988) #12	TRAF6 (ENSMFAG00000040017) #13	PRR5L (ENSMFAG00000059336) #14	COMMD9 (ENSMFAG00000060407) #15	LDLRAD3 (ENSMFAG00000043269) #16	ENSMFAG00000065530	TRIM44 (ENSMFAG00000045833) #19	PAMR1 (ENSMFAG00000042856) #21	SLC1A2 (ENSMFAG00000043293) #22	CD44 (ENSMFAG00000043892) #24	PDHX (ENSMFAG00000042807) #25	APIP (ENSMFAG00000031416) #26	EHF (ENSMFAG00000029447) #27	ELF5 (ENSMFAG00000046400) #28	ENSMFAG00000065345	CAT (ENSMFAG00000000437) #29	ENSMFAG00000001208 #31	NAT10 (ENSMFAG00000041013) #32	CAPRIN1 (ENSMFAG00000038273) #33	ENSMFAG00000065168	LMO2 (ENSMFAG00000038993) #34	FBXO3 (ENSMFAG00000044515) #36	C11orf91 (ENSMFAG00000032872)	ENSMFAG00000061345
Rhesus	MODERN SPECIES	5	API5 (ENSMMUG00000008827) #8	ENSMMUG00000049945	ENSMMUG00000049895	LRRC4C (ENSMMUG00000007945) #9	IFTAP (ENSMMUG00000018269) #10	RAG2 (ENSMMUG00000018268) #11	RAG1 (ENSMMUG00000049488) #12	TRAF6 (ENSMMUG00000018266) #13	PRR5L (ENSMMUG00000018265) #14	COMMD9 (ENSMMUG00000007095) #15	LDLRAD3 (ENSMMUG00000007093) #16	ENSMMUG00000051870	TRIM44 (ENSMMUG00000004332) #19	FJX1 (ENSMMUG00000004331) #20	PAMR1 (ENSMMUG00000004330) #21	SLC1A2 (ENSMMUG00000004329) #22	CD44 (ENSMMUG00000004327) #24	PDHX (ENSMMUG00000006448) #25	APIP (ENSMMUG00000006447) #26	ENSMMUG00000057784	EHF (ENSMMUG00000005927) #27	ELF5 (ENSMMUG00000002432) #28	CAT (ENSMMUG00000002429) #29	ABTB2 (ENSMMUG00000058619) #31	NAT10 (ENSMMUG00000021646) #32	CAPRIN1 (ENSMMUG00000021643) #33	ENSMMUG00000041821	LMO2 (ENSMMUG00000007633) #34	FBXO3 (ENSMMUG00000006063) #36	CD59 (ENSMMUG00000055602) #37	KIAA1549L (ENSMMUG00000017218)
Cercopithecinae_b	ANCESTRAL SPECIES	27	ENSGT00390000010991.e #8	ENSGT00910000147254	ENSGT00940000157405 #9	ENSGT00390000009130.a.a.a.b	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426.s #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00910000147182 #18	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00910000147087 #23	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a #33	ENSGT00860000135900	ENSGT00940000160199 #34	ENSGT00940000153571.b #36	ENSGT00390000016309 #37	ENSGT00390000002169
Olive baboon	MODERN SPECIES	3	OR4B1 (ENSPANG00000047367)	OR4X2 (ENSPANG00000002781)	LRRC4C (ENSPANG00000011879) #9	ENSPANG00000049659	IFTAP (ENSPANG00000016654) #10	RAG2 (ENSPANG00000010008) #11	RAG1 (ENSPANG00000006541) #12	TRAF6 (ENSPANG00000004746) #13	PRR5L (ENSPANG00000006440) #14	COMMD9 (ENSPANG00000025616) #15	LDLRAD3 (ENSPANG00000019179) #16	ENSPANG00000040429	TRIM44 (ENSPANG00000005449) #19	FJX1 (ENSPANG00000006035) #20	PAMR1 (ENSPANG00000001890) #21	SLC1A2 (ENSPANG00000004847) #22	CD44 (ENSPANG00000023332) #24	ENSPANG00000042989	PDHX (ENSPANG00000008468) #25	APIP (ENSPANG00000020888) #26	EHF (ENSPANG00000024423) #27	ELF5 (ENSPANG00000023357) #28	CAT (ENSPANG00000007496) #29	ABTB2 (ENSPANG00000015046) #31	NAT10 (ENSPANG00000013723) #32	CAPRIN1 (ENSPANG00000006439) #33	LMO2 (ENSPANG00000017076) #34	FBXO3 (ENSPANG00000007978) #36	CD59 (ENSPANG00000003386) #37	C11orf91 (ENSPANG00000038718)	KIAA1549L (ENSPANG00000011193)
Cercopithecinae_d	ANCESTRAL SPECIES	61	ENSGT00390000010991.e #8	ENSGT00910000147254	ENSGT00940000157405 #9	ENSGT00390000009130.a.a.a.b	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426.s #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00910000147182 #18	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00910000147087 #23	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a #33	ENSGT00860000135900	ENSGT00940000160199 #34	ENSGT00940000153571.b #36	ENSGT00390000016309 #37	ENSGT00390000002169
Drill	MODERN SPECIES	1463													TRIM44 (ENSMLEG00000032388) #19	ENSMLEG00000032999 #18	PAMR1 (ENSMLEG00000011115) #21	SLC1A2 (ENSMLEG00000043724) #22	ENSMLEG00000006190 #23	CD44 (ENSMLEG00000036902) #24	PDHX (ENSMLEG00000032133) #25	APIP (ENSMLEG00000038938) #26	EHF (ENSMLEG00000031177) #27	ELF5 (ENSMLEG00000011534) #28	CAT (ENSMLEG00000036619) #29	ABTB2 (ENSMLEG00000034734) #31	NAT10 (ENSMLEG00000017199) #32	CAPRIN1 (ENSMLEG00000043851) #33	ENSMLEG00000037419	LMO2 (ENSMLEG00000029197) #34	FBXO3 (ENSMLEG00000041134) #36	CD59 (ENSMLEG00000037740) #37	KIAA1549L (ENSMLEG00000027768)
Sooty mangabey	MODERN SPECIES	660	ENSCATG00000036798	ENSCATG00000037205	LRRC4C (ENSCATG00000021681) #9	ENSCATG00000007177	IFTAP (ENSCATG00000030440) #10	RAG2 (ENSCATG00000018432) #11	RAG1 (ENSCATG00000033061) #12	TRAF6 (ENSCATG00000030633) #13	PRR5L (ENSCATG00000036147) #14	COMMD9 (ENSCATG00000032393) #15	LDLRAD3 (ENSCATG00000035471) #16	ENSCATG00000029956 #18	TRIM44 (ENSCATG00000041732) #19	FJX1 (ENSCATG00000019714) #20	PAMR1 (ENSCATG00000037871) #21	SLC1A2 (ENSCATG00000042113) #22	ENSCATG00000032365 #23	CD44 (ENSCATG00000038723) #24	PDHX (ENSCATG00000031099) #25	APIP (ENSCATG00000032616) #26	EHF (ENSCATG00000035479) #27	ELF5 (ENSCATG00000039615) #28	CAT (ENSCATG00000034200) #29	ABTB2 (ENSCATG00000039861) #31	NAT10 (ENSCATG00000037820) #32	CAPRIN1 (ENSCATG00000038427) #33	LMO2 (ENSCATG00000035418) #34	FBXO3 (ENSCATG00000043919) #36	C11orf91 (ENSCATG00000038135)	KIAA1549L (ENSCATG00000036464)	HIPK3 (ENSCATG00000037808)
Rhinopithecus	ANCESTRAL SPECIES	111						ENSGT00390000009130.a.a.a.a.a.b	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426.s #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00440000034605 #19	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a #33	ENSGT00940000160199 #34	ENSGT00940000153571.b #36	ENSGT00390000016309 #37	ENSGT00530000063472.b.b.a.b	ENSGT00940000155960.b	ENSGT00390000006758.b
Golden snub-nosed monkey	MODERN SPECIES	3270				ENSRROG00000017023	ENSRROG00000007760	IFTAP (ENSRROG00000029267) #10	RAG2 (ENSRROG00000003972) #11	RAG1 (ENSRROG00000026777) #12	TRAF6 (ENSRROG00000042849) #13	PRR5L (ENSRROG00000042840) #14	COMMD9 (ENSRROG00000036538) #15	LDLRAD3 (ENSRROG00000032454) #16	ENSRROG00000035939	TRIM44 (ENSRROG00000039062) #19	PAMR1 (ENSRROG00000028590) #21	SLC1A2 (ENSRROG00000030103) #22	CD44 (ENSRROG00000040965) #24	PDHX (ENSRROG00000045075) #25	APIP (ENSRROG00000044872) #26	EHF (ENSRROG00000038817) #27	ELF5 (ENSRROG00000031978) #28	CAT (ENSRROG00000002648) #29	ABTB2 (ENSRROG00000035702) #31	NAT10 (ENSRROG00000011811) #32	CAPRIN1 (ENSRROG00000039325) #33	LMO2 (ENSRROG00000042167) #34	FBXO3 (ENSRROG00000040121) #36	CD59 (ENSRROG00000024041) #37	KIAA1549L (ENSRROG00000039380)	HIPK3 (ENSRROG00000043050)	CSTF3 (ENSRROG00000043450)
Black snub-nosed monkey	MODERN SPECIES	1475														TRIM44 (ENSRBIG00000030012) #19	PAMR1 (ENSRBIG00000038564) #21	SLC1A2 (ENSRBIG00000031455) #22	CD44 (ENSRBIG00000035084) #24	PDHX (ENSRBIG00000040537) #25	APIP (ENSRBIG00000027526) #26	EHF (ENSRBIG00000026520) #27	ELF5 (ENSRBIG00000031645) #28	CAT (ENSRBIG00000000541) #29	ABTB2 (ENSRBIG00000038271) #31	NAT10 (ENSRBIG00000028922) #32	CAPRIN1 (ENSRBIG00000028278) #33	ENSRBIG00000022126	LMO2 (ENSRBIG00000028113) #34	FBXO3 (ENSRBIG00000024490) #36	CD59 (ENSRBIG00000013725) #37	KIAA1549L (ENSRBIG00000040921)	HIPK3 (ENSRBIG00000028852)
Platyrrhini	ANCESTRAL SPECIES	3	ENSGT00940000154860	ENSGT00390000006196 #7	ENSGT00950000183087.A.b.a	ENSGT00390000010991 #8	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426 #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00910000147087 #23	ENSGT00530000063822.a.a #24	ENSGT00940000156046.e #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a.h #33	ENSGT00940000160199 #34	ENSGT00940000153571.b #36	ENSGT00390000016309 #37	ENSGT00390000002169	ENSGT00530000063472.b.b.a.b
Mas night monkey	MODERN SPECIES	349	HSD17B12 (ENSANAG00000001245)	TTC17 (ENSANAG00000033544) #7	API5 (ENSANAG00000035535) #8	LRRC4C (ENSANAG00000002444) #9	IFTAP (ENSANAG00000034158) #10	RAG2 (ENSANAG00000020159) #11	RAG1 (ENSANAG00000020150) #12	TRAF6 (ENSANAG00000027972) #13	PRR5L (ENSANAG00000020046) #14	COMMD9 (ENSANAG00000022827) #15	ENSANAG00000026763	LDLRAD3 (ENSANAG00000037192) #16	ENSANAG00000030501 ##17	TRIM44 (ENSANAG00000014196) #19	PAMR1 (ENSANAG00000029143) #21	SLC1A2 (ENSANAG00000020434) #22	ENSANAG00000025347 #23	CD44 (ENSANAG00000029878) #24	ENSANAG00000015605 #25	APIP (ENSANAG00000038438) #26	EHF (ENSANAG00000024254) #27	ELF5 (ENSANAG00000016910) #28	CAT (ENSANAG00000030970) #29	ABTB2 (ENSANAG00000030512) #31	NAT10 (ENSANAG00000026850) #32	CAPRIN1 (ENSANAG00000032811) #33	LMO2 (ENSANAG00000023079) #34	ENSANAG00000037514	FBXO3 (ENSANAG00000026400) #36	CD59 (ENSANAG00000033427) #37	C11orf91 (ENSANAG00000035705)
Cebidae	ANCESTRAL SPECIES		ENSGT00940000154860	ENSGT00390000006196 #7	ENSGT00950000183087.A.b.a	ENSGT00390000010991 #8	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426 #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #24	ENSGT00940000156046.e #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a.h #33	ENSGT00940000160199 #34	ENSGT00940000153571.b #36	ENSGT00390000016309 #37	ENSGT00390000002169	ENSGT00530000063472.b.b.a.b	ENSGT00940000155960.b
Marmoset	MODERN SPECIES	2	ENSCJAG00000071318	ENSCJAG00000086386	ENSCJAG00000056043	ENSCJAG00000069702	RAG2 (ENSCJAG00000011084) #11	RAG1 (ENSCJAG00000039101) #12	TRAF6 (ENSCJAG00000011070) #13	PRR5L (ENSCJAG00000044403) #14	COMMD9 (ENSCJAG00000011032) #15	LDLRAD3 (ENSCJAG00000011017) #16	TRIM44 (ENSCJAG00000011000) #19	ENSCJAG00000075599	ENSCJAG00000082010	FJX1 (ENSCJAG00000010998) #20	PAMR1 (ENSCJAG00000010977) #21	SLC1A2 (ENSCJAG00000010952) #22	CD44 (ENSCJAG00000010912) #24	PDHX (ENSCJAG00000010888) #25	APIP (ENSCJAG00000065396) #26	EHF (ENSCJAG00000010810) #27	ELF5 (ENSCJAG00000040519) #28	CAT (ENSCJAG00000010742) #29	ENSCJAG00000079093	ENSCJAG00000070732	ABTB2 (ENSCJAG00000010711) #31	NAT10 (ENSCJAG00000010585) #32	CAPRIN1 (ENSCJAG00000010542) #33	ENSCJAG00000076270	LMO2 (ENSCJAG00000010531) #34	FBXO3 (ENSCJAG00000010459) #36	CD59 (ENSCJAG00000043097) #37
Cebidae_a	ANCESTRAL SPECIES	10	ENSGT00940000157226	ENSGT00940000154860	ENSGT00390000006196 #7	ENSGT00950000183087.A.b.a	ENSGT00390000010991 #8	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426 #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00440000034605 #19	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #24	ENSGT00940000156046.e #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a.h #33	ENSGT00940000160199 #34	ENSGT00460000041594.e.b	ENSGT00940000153571.b #36	ENSGT00390000016309 #37	ENSGT00390000002169	ENSGT00530000063472.b.b.a.b
Bolivian squirrel monkey	MODERN SPECIES	42	TTC17 (ENSSBOG00000027019) #7	API5 (ENSSBOG00000021448) #8	ENSSBOG00000029311	ENSSBOG00000031892	LRRC4C (ENSSBOG00000018653) #9	ENSSBOG00000033020	IFTAP (ENSSBOG00000025933) #10	RAG2 (ENSSBOG00000017623) #11	RAG1 (ENSSBOG00000016673) #12	TRAF6 (ENSSBOG00000028498) #13	PRR5L (ENSSBOG00000033062) #14	COMMD9 (ENSSBOG00000023383) #15	LDLRAD3 (ENSSBOG00000024561) #16	TRIM44 (ENSSBOG00000019501) #19	PAMR1 (ENSSBOG00000034633) #21	SLC1A2 (ENSSBOG00000031126) #22	CD44 (ENSSBOG00000020740) #24	ENSSBOG00000007623 #25	APIP (ENSSBOG00000027533) #26	EHF (ENSSBOG00000007293) #27	ELF5 (ENSSBOG00000025536) #28	CAT (ENSSBOG00000035672) #29	ABTB2 (ENSSBOG00000019878) #31	NAT10 (ENSSBOG00000023643) #32	CAPRIN1 (ENSSBOG00000029900) #33	LMO2 (ENSSBOG00000019669) #34	ENSSBOG00000033446	FBXO3 (ENSSBOG00000023671) #36	CD59 (ENSSBOG00000022436) #37	C11orf91 (ENSSBOG00000020764)	KIAA1549L (ENSSBOG00000033426)
Capuchin	MODERN SPECIES	66							IFTAP (ENSCCAG00000029617) #10	RAG2 (ENSCCAG00000004467) #11	RAG1 (ENSCCAG00000020121) #12	TRAF6 (ENSCCAG00000009055) #13	PRR5L (ENSCCAG00000026981) #14	COMMD9 (ENSCCAG00000025370) #15	LDLRAD3 (ENSCCAG00000025416) #16	TRIM44 (ENSCCAG00000023918) #19	PAMR1 (ENSCCAG00000026688) #21	SLC1A2 (ENSCCAG00000023288) #22	CD44 (ENSCCAG00000027898) #24	ENSCCAG00000026050 #25	APIP (ENSCCAG00000034199) #26	EHF (ENSCCAG00000024416) #27	ELF5 (ENSCCAG00000037404) #28	CAT (ENSCCAG00000033204) #29	ABTB2 (ENSCCAG00000036795) #31	NAT10 (ENSCCAG00000003512) #32	CAPRIN1 (ENSCCAG00000020172) #33	LMO2 (ENSCCAG00000025912) #34	ENSCCAG00000031196	FBXO3 (ENSCCAG00000019477) #36	CD59 (ENSCCAG00000021398) #37	KIAA1549L (ENSCCAG00000036428)	RFWD3 (ENSCCAG00000023598)
Tarsier	MODERN SPECIES	6464															PAMR1 (ENSTSYG00000036898) #21	SLC1A2 (ENSTSYG00000037473) #22	ENSTSYG00000030847 #24
Strepsirrhini	ANCESTRAL SPECIES	6	ENSGT00940000157226	ENSGT00940000154860	ENSGT00390000006196 #7	ENSGT00390000010991 #8	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426 #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a.c #33	ENSGT00940000160199 #34	ENSGT00940000153571.b #36	ENSGT00390000016309 #37	ENSGT00390000002169	ENSGT00530000063472.b.b.a.b	ENSGT00940000155960.b
Lemuriformes	ANCESTRAL SPECIES	16	ENSGT00940000157226	ENSGT00940000154860	ENSGT00390000006196 #7	ENSGT00390000010991 #8	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426 #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a.c #33	ENSGT00940000160199 #34	ENSGT00940000153571.b #36	ENSGT00390000016309 #37	ENSGT00390000002169	ENSGT00530000063472.b.b.a.b	ENSGT00940000155960.b
Mouse lemur	MODERN SPECIES	27	C11orf96 (ENSMICG00000041610)	ALKBH3 (ENSMICG00000014651)	HSD17B12 (ENSMICG00000014632)	TTC17 (ENSMICG00000014602) #7	ENSMICG00000014581 #8	LRRC4C (ENSMICG00000047157) #9	ENSMICG00000043108	IFTAP (ENSMICG00000008620) #10	TRAF6 (ENSMICG00000008604) #13	PRR5L (ENSMICG00000047184) #14	COMMD9 (ENSMICG00000008594) #15	LDLRAD3 (ENSMICG00000008590) #16	TRIM44 (ENSMICG00000008587) #19	FJX1 (ENSMICG00000033879) #20	PAMR1 (ENSMICG00000003733) #21	SLC1A2 (ENSMICG00000003719) #22	CD44 (ENSMICG00000003713) #24	ENSMICG00000036406	PDHX (ENSMICG00000003700) #25	APIP (ENSMICG00000003696) #26	EHF (ENSMICG00000003694) #27	ENSMICG00000038699	ELF5 (ENSMICG00000003689) #28	CAT (ENSMICG00000003672) #29	ABTB2 (ENSMICG00000003665) #31	NAT10 (ENSMICG00000003627) #32	CAPRIN1 (ENSMICG00000003617) #33	LMO2 (ENSMICG00000027826) #34	FBXO3 (ENSMICG00000012713) #36	CD59 (ENSMICG00000037109) #37	C11orf91 (ENSMICG00000042497)
Lemuriformes_a	ANCESTRAL SPECIES	92							ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426 #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a.c #33	ENSGT00940000160199 #34	ENSGT00940000153571.b #36	ENSGT00390000016309 #37	ENSGT00390000002169	ENSGT00530000063472.b.b.a.b	ENSGT00940000155960.b
Coquerels sifaka	MODERN SPECIES	425								IFTAP (ENSPCOG00000014571) #10	TRAF6 (ENSPCOG00000002649) #13	PRR5L (ENSPCOG00000016168) #14	COMMD9 (ENSPCOG00000027062) #15	LDLRAD3 (ENSPCOG00000018799) #16	TRIM44 (ENSPCOG00000017249) #19	FJX1 (ENSPCOG00000012141) #20	PAMR1 (ENSPCOG00000021819) #21	SLC1A2 (ENSPCOG00000024058) #22	CD44 (ENSPCOG00000025918) #24	PDHX (ENSPCOG00000018230) #25	APIP (ENSPCOG00000000871) #26	EHF (ENSPCOG00000015717) #27	ELF5 (ENSPCOG00000021457) #28	CAT (ENSPCOG00000017699) #29	ABTB2 (ENSPCOG00000028529) #31	NAT10 (ENSPCOG00000009633) #32	CAPRIN1 (ENSPCOG00000021422) #33	LMO2 (ENSPCOG00000002410) #34	ENSPCOG00000018436 #36	CD59 (ENSPCOG00000012858) #37	C11orf91 (ENSPCOG00000023742)	KIAA1549L (ENSPCOG00000022400)	ENSPCOG00000018218
Greater bamboo lemur	MODERN SPECIES	820							RAG2 (ENSPSMG00000025673) #11	RAG1 (ENSPSMG00000025677) #12	TRAF6 (ENSPSMG00000025679) #13	PRR5L (ENSPSMG00000025683) #14	COMMD9 (ENSPSMG00000025691) #15	LDLRAD3 (ENSPSMG00000025694) #16	TRIM44 (ENSPSMG00000025695) #19	FJX1 (ENSPSMG00000025697) #20	PAMR1 (ENSPSMG00000025723) #21	SLC1A2 (ENSPSMG00000025760) #22	ENSPSMG00000025770 #24	ENSPSMG00000025776 ##24	PDHX (ENSPSMG00000025782) #25	APIP (ENSPSMG00000025789) #26	ENSPSMG00000025796 #27
Bushbaby	MODERN SPECIES	116	LRRC4C (ENSOGAG00000001283) #9	ENSOGAG00000025009	ENSOGAG00000031537	ENSOGAG00000029194	IFTAP (ENSOGAG00000011890) #10	ENSOGAG00000031605 #11	ENSOGAG00000027339 #12	TRAF6 (ENSOGAG00000007506) #13	PRR5L (ENSOGAG00000007503) #14	COMMD9 (ENSOGAG00000016261) #15	LDLRAD3 (ENSOGAG00000016253) #16	ENSOGAG00000030890	TRIM44 (ENSOGAG00000016248) #19	FJX1 (ENSOGAG00000027707) #20	PAMR1 (ENSOGAG00000016246) #21	SLC1A2 (ENSOGAG00000016241) #22	CD44 (ENSOGAG00000016233) #24	PDHX (ENSOGAG00000015641) #25	APIP (ENSOGAG00000015637) #26	EHF (ENSOGAG00000015942) #27	ELF5 (ENSOGAG00000006242) #28	CAT (ENSOGAG00000006240) #29	ABTB2 (ENSOGAG00000000457) #31	NAT10 (ENSOGAG00000016737) #32	CAPRIN1 (ENSOGAG00000016733) #33	LMO2 (ENSOGAG00000014321) #34	FBXO3 (ENSOGAG00000014318) #36	CD59 (ENSOGAG00000003325) #37	C11orf91 (ENSOGAG00000033539)	KIAA1549L (ENSOGAG00000003316)	HIPK3 (ENSOGAG00000008857)
Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00940000157226	ENSGT00940000154860	ENSGT00390000006196 #7	ENSGT00390000010991 #8	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426 #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a #33	ENSGT00940000160199 #34	ENSGT00940000153571.b #36	ENSGT00390000016309 #37	ENSGT00390000002169	ENSGT00530000063472.b.b.a.b	ENSGT00940000155960.b
Tree shrew	MODERN SPECIES	348																ENSTBEG00000004233 #22
Glires	ANCESTRAL SPECIES	1	ENSGT00940000157226	ENSGT00940000154860	ENSGT00390000006196 #7	ENSGT00390000010991 #8	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426 #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a #33	ENSGT00940000160199 #34	ENSGT00940000153571.b #36	ENSGT00390000016309 #37	ENSGT00390000002169	ENSGT00530000063472.b.b.a.b	ENSGT00940000155960.b
Lagomorpha	ANCESTRAL SPECIES	4	ENSGT00940000157226	ENSGT00940000154860	ENSGT00390000006196 #7	ENSGT00390000010991 #8	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426 #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a #33	ENSGT00940000160199 #34	ENSGT00940000153571.b #36	ENSGT00390000016309 #37	ENSGT00390000002169	ENSGT01030000240070	ENSGT00530000063472.b.b.a.b
Rabbit	MODERN SPECIES		LRRC4C (ENSOCUG00000017587) #9	ENSOCUG00000028119	ENSOCUG00000031380	ENSOCUG00000028011	ENSOCUG00000038153	IFTAP (ENSOCUG00000006998) #10	RAG2 (ENSOCUG00000006995) #11	RAG1 (ENSOCUG00000006989) #12	TRAF6 (ENSOCUG00000012011) #13	PRR5L (ENSOCUG00000012007) #14	COMMD9 (ENSOCUG00000015674) #15	LDLRAD3 (ENSOCUG00000026068) #16	TRIM44 (ENSOCUG00000003818) #19	FJX1 (ENSOCUG00000026770) #20	PAMR1 (ENSOCUG00000000721) #21	SLC1A2 (ENSOCUG00000000718) #22	CD44 (ENSOCUG00000000715) #24	PDHX (ENSOCUG00000008004) #25	APIP (ENSOCUG00000021141) #26	EHF (ENSOCUG00000010261) #27	ELF5 (ENSOCUG00000014207) #28	CAT (ENSOCUG00000014198) #29	ABTB2 (ENSOCUG00000001405) #31	NAT10 (ENSOCUG00000001398) #32	CAPRIN1 (ENSOCUG00000024887) #33	LMO2 (ENSOCUG00000001532) #34	ENSOCUG00000014606 #36	ENSOCUG00000038151 #36	ENSOCUG00000014601 #37	ENSOCUG00000030857	C11orf91 (ENSOCUG00000025307)
Pika	MODERN SPECIES	4741															PAMR1 (ENSOPRG00000010765) #21	SLC1A2 (ENSOPRG00000010743) #22	CD44 (ENSOPRG00000010721) #24	ENSOPRG00000019159
Rodentia	ANCESTRAL SPECIES	1	ENSGT00940000157226	ENSGT00940000154860	ENSGT00390000006196 #7	ENSGT00390000010991 #8	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426 #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a #33	ENSGT00940000160199 #34	ENSGT00940000153571.b #36	ENSGT00390000016309 #37	ENSGT00390000002169	ENSGT00530000063472.b.b.a.b	ENSGT00940000155960.b
Rodentia_B	ANCESTRAL SPECIES	5	ENSGT00940000157226	ENSGT00940000154860	ENSGT00390000006196 #7	ENSGT00390000010991 #8	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426 #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a #33	ENSGT00940000160199 #34	ENSGT00940000153571.b #36	ENSGT00390000016309 #37	ENSGT00390000002169	ENSGT00530000063472.b.b.a.b	ENSGT00940000155960.b
Kangaroo rat	MODERN SPECIES	365			Lrrc4c (ENSDORG00000023251) #9	Iftap (ENSDORG00000010963) #10	Rag2 (ENSDORG00000027476) #11	Rag1 (ENSDORG00000028200) #12	Traf6 (ENSDORG00000028957) #13	Prr5l (ENSDORG00000023439) #14	ENSDORG00000023878	Commd9 (ENSDORG00000002082) #15	Ldlrad3 (ENSDORG00000027771) #16	Trim44 (ENSDORG00000003756) #19	Fjx1 (ENSDORG00000028183) #20	Pamr1 (ENSDORG00000009499) #21	ENSDORG00000023527	Slc1a2 (ENSDORG00000014749) #22	ENSDORG00000014748 #24	Pdhx (ENSDORG00000006342) #25	Apip (ENSDORG00000006346) #26	Ehf (ENSDORG00000007642) #27	Elf5 (ENSDORG00000029279) #28	Cat (ENSDORG00000007636) #29	Abtb2 (ENSDORG00000006572) #31	Nat10 (ENSDORG00000006567) #32	Caprin1 (ENSDORG00000006566) #33	Lmo2 (ENSDORG00000010406) #34	Fbxo3 (ENSDORG00000008866) #36	ENSDORG00000026857	A930018P22Rik (ENSDORG00000008868)	ENSDORG00000024985	D430041D05Rik (ENSDORG00000012272)
Myomorpha	ANCESTRAL SPECIES	4	ENSGT00940000157226.f	ENSGT00940000154860	ENSGT00390000006196 #7	ENSGT00390000010991 #8	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426 #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a #33	ENSGT00940000160199 #34	ENSGT00940000153571.b #36	ENSGT00390000016309 #37	ENSGT00390000002169	ENSGT00530000063472.b.b.a.b	ENSGT00940000155960.b
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	79	ENSJJAG00000011645	Spint1 (ENSJJAG00000014215)	Rhov (ENSJJAG00000005067)	Vps18 (ENSJJAG00000015321)	Dll4 (ENSJJAG00000019587)	Ino80 (ENSJJAG00000016166)	ENSJJAG00000000316	ENSJJAG00000005674	ENSJJAG00000018584	ENSJJAG00000004045	Traf6 (ENSJJAG00000019637) #13	ENSJJAG00000024040 #14	ENSJJAG00000009576 #15	Pamr1 (ENSJJAG00000002115) #21	ENSJJAG00000012579 #22	ENSJJAG00000017687 #22	ENSJJAG00000024031 #24	Pdhx (ENSJJAG00000007859) #25	ENSJJAG00000011063 #26	Ehf (ENSJJAG00000023839) #27	Elf5 (ENSJJAG00000003357) #28	Cat (ENSJJAG00000012897) #29	Abtb2 (ENSJJAG00000014143) #31	Nat10 (ENSJJAG00000023042) #32	Lmo2 (ENSJJAG00000020848) #34	Fbxo3 (ENSJJAG00000022887) #36	D430041D05Rik (ENSJJAG00000019415)	Hipk3 (ENSJJAG00000000303)	Cstf3 (ENSJJAG00000018430)	Tcp11l1 (ENSJJAG00000002396)	Ccdc73 (ENSJJAG00000021731)
Lesser Egyptian jerboa	MODERN SPECIES	79	Zfyve19 (ENSJJAG00000022792)	ENSJJAG00000011645	Spint1 (ENSJJAG00000014215)	Rhov (ENSJJAG00000005067)	Vps18 (ENSJJAG00000015321)	Dll4 (ENSJJAG00000019587)	Ino80 (ENSJJAG00000016166)	ENSJJAG00000000316	ENSJJAG00000005674	ENSJJAG00000018584	ENSJJAG00000004045	Traf6 (ENSJJAG00000019637) #13	ENSJJAG00000024040 #14	ENSJJAG00000009576 #15	Pamr1 (ENSJJAG00000002115) #21	ENSJJAG00000012579 #22	ENSJJAG00000017687 #22	ENSJJAG00000024031 #24	Pdhx (ENSJJAG00000007859) #25	ENSJJAG00000011063 #26	Ehf (ENSJJAG00000023839) #27	Elf5 (ENSJJAG00000003357) #28	Cat (ENSJJAG00000012897) #29	Abtb2 (ENSJJAG00000014143) #31	Nat10 (ENSJJAG00000023042) #32	Lmo2 (ENSJJAG00000020848) #34	Fbxo3 (ENSJJAG00000022887) #36	D430041D05Rik (ENSJJAG00000019415)	Hipk3 (ENSJJAG00000000303)	Cstf3 (ENSJJAG00000018430)	Tcp11l1 (ENSJJAG00000002396)
Muroidea	ANCESTRAL SPECIES	2	ENSGT00940000157226.f	ENSGT00940000154860	ENSGT00390000006196 #7	ENSGT00390000010991 #8	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426 #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a #33	ENSGT00940000160199 #34	ENSGT00940000153571.b #36	ENSGT00390000016309 #37	ENSGT00390000002169	ENSGT00530000063472.b.b.a.b	ENSGT00940000155960.b
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00940000157226.f	ENSGT00940000154860	ENSGT00390000006196 #7	ENSGT00390000010991 #8	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426 #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a #33	ENSGT00940000160199 #34	ENSGT00940000153571.b #36	ENSGT00390000016309 #37	ENSGT00390000002169	ENSGT00530000063472.b.b.a.b	ENSGT00940000155960.b
Cricetidae	ANCESTRAL SPECIES	5	ENSGT00940000157226.f	ENSGT00940000154860	ENSGT00390000006196 #7	ENSGT00390000010991 #8	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426 #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a #33	ENSGT00940000160199 #34	ENSGT00940000153571.b #36	ENSGT00390000016309 #37	ENSGT00390000002169	ENSGT00530000063472.b.b.a.b	ENSGT00940000155960.b
Cricetidae_B	ANCESTRAL SPECIES	34	ENSGT00940000157226.f	ENSGT00940000154860	ENSGT00390000006196 #7	ENSGT00390000010991 #8	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426 #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a #33	ENSGT00940000160199 #34	ENSGT00940000153571.b #36	ENSGT00390000016309 #37	ENSGT00390000002169	ENSGT00530000063472.b.b.a.b	ENSGT00940000155960.b
Northern American deer mouse	MODERN SPECIES	17	Api5 (ENSPEMG00000019874) #8	ENSPEMG00000012394	Lrrc4c (ENSPEMG00000012198) #9	ENSPEMG00000025399	ENSPEMG00000028280	Iftap (ENSPEMG00000007125) #10	Rag2 (ENSPEMG00000018407) #11	Rag1 (ENSPEMG00000018077) #12	Traf6 (ENSPEMG00000015556) #13	Prr5l (ENSPEMG00000014248) #14	Commd9 (ENSPEMG00000011457) #15	Ldlrad3 (ENSPEMG00000010990) #16	Trim44 (ENSPEMG00000030265) #19	Fjx1 (ENSPEMG00000005586) #20	Pamr1 (ENSPEMG00000012941) #21	Slc1a2 (ENSPEMG00000010827) #22	Cd44 (ENSPEMG00000020598) #24	Pdhx (ENSPEMG00000015465) #25	Apip (ENSPEMG00000012212) #26	Ehf (ENSPEMG00000016561) #27	ENSPEMG00000015756	Elf5 (ENSPEMG00000004489) #28	Cat (ENSPEMG00000005139) #29	Abtb2 (ENSPEMG00000014140) #31	Nat10 (ENSPEMG00000009451) #32	Caprin1 (ENSPEMG00000009832) #33	Lmo2 (ENSPEMG00000000075) #34	Fbxo3 (ENSPEMG00000018420) #36	ENSPEMG00000026456 #37	A930018P22Rik (ENSPEMG00000000170)	D430041D05Rik (ENSPEMG00000020969)
Prairie vole	MODERN SPECIES	81	ENSMOCG00000017344	Lrrc4c (ENSMOCG00000005308) #9	ENSMOCG00000016690	ENSMOCG00000016731	ENSMOCG00000001289	Iftap (ENSMOCG00000016114) #10	Rag2 (ENSMOCG00000011926) #11	Rag1 (ENSMOCG00000008467) #12	Traf6 (ENSMOCG00000016757) #13	Prr5l (ENSMOCG00000020211) #14	Commd9 (ENSMOCG00000021561) #15	Ldlrad3 (ENSMOCG00000000619) #16	Trim44 (ENSMOCG00000006259) #19	Fjx1 (ENSMOCG00000004525) #20	Pamr1 (ENSMOCG00000003031) #21	Slc1a2 (ENSMOCG00000022434) #22	Cd44 (ENSMOCG00000021544) #24	Pdhx (ENSMOCG00000021084) #25	Apip (ENSMOCG00000015378) #26	Ehf (ENSMOCG00000003108) #27	Elf5 (ENSMOCG00000021785) #28	Cat (ENSMOCG00000019198) #29	Abtb2 (ENSMOCG00000013912) #31	Nat10 (ENSMOCG00000021454) #32	Caprin1 (ENSMOCG00000020128) #33	ENSMOCG00000018784	Lmo2 (ENSMOCG00000003531) #34	Fbxo3 (ENSMOCG00000022595) #36	ENSMOCG00000003094 #37	A930018P22Rik (ENSMOCG00000013797)	D430041D05Rik (ENSMOCG00000003074)
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00940000154860	ENSGT00390000006196 #7	ENSGT00390000010991 #8	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426 #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00550000074784.a.b	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a #33	ENSGT00940000160199 #34	ENSGT00940000153571.b #36	ENSGT00390000016309 #37	ENSGT00390000002169	ENSGT00530000063472.b.b.a.b	ENSGT00940000155960.b
Golden Hamster	MODERN SPECIES	618	Ttc17 (ENSMAUG00000010822) #7	ENSMAUG00000008950 #8	Lrrc4c (ENSMAUG00000008203) #9	Iftap (ENSMAUG00000010224) #10	Rag2 (ENSMAUG00000010934) #11	Rag1 (ENSMAUG00000010819) #12	Traf6 (ENSMAUG00000005756) #13	Prr5l (ENSMAUG00000004032) #14	Commd9 (ENSMAUG00000003287) #15	Ldlrad3 (ENSMAUG00000009660) #16	ENSMAUG00000010163	ENSMAUG00000010071	Trim44 (ENSMAUG00000008730) #19	Fjx1 (ENSMAUG00000002426) #20	Pamr1 (ENSMAUG00000007447) #21	Slc1a2 (ENSMAUG00000008324) #22	Cd44 (ENSMAUG00000004546) #24	Pdhx (ENSMAUG00000002883) #25	Apip (ENSMAUG00000001671) #26	Ehf (ENSMAUG00000004776) #27	Elf5 (ENSMAUG00000003650) #28	Cat (ENSMAUG00000012493) #29	Abtb2 (ENSMAUG00000011208) #31	ENSMAUG00000010653 #32	ENSMAUG00000010029 #32	Caprin1 (ENSMAUG00000008906) #33	Lmo2 (ENSMAUG00000006848) #34	ENSMAUG00000005850 #36	ENSMAUG00000003722	A930018P22Rik (ENSMAUG00000002950)	D430041D05Rik (ENSMAUG00000010328)
Chinese hamster chok1gshd	MODERN SPECIES	188	Lrrc4c (ENSCGRG00001011183) #9	ENSCGRG00001011370	ENSCGRG00001002351	ENSCGRG00001003416	Iftap (ENSCGRG00001020974) #10	Rag2 (ENSCGRG00001011151) #11	Rag1 (ENSCGRG00001002046) #12	Traf6 (ENSCGRG00001019275) #13	Prr5l (ENSCGRG00001018581) #14	ENSCGRG00001017501 #15	Ldlrad3 (ENSCGRG00001024912) #16	ENSCGRG00001024835	Trim44 (ENSCGRG00001024631) #19	Fjx1 (ENSCGRG00001010732) #20	Pamr1 (ENSCGRG00001023148) #21	Slc1a2 (ENSCGRG00001023537) #22	Cd44 (ENSCGRG00001022042) #24	Pdhx (ENSCGRG00001020048) #25	APIP (ENSCGRG00001019435) #26	Ehf (ENSCGRG00001018872) #27	Elf5 (ENSCGRG00001017703) #28	Cat (ENSCGRG00001022758) #29	Abtb2 (ENSCGRG00001022262) #31	NAT10 (ENSCGRG00001010534) #32	Caprin1 (ENSCGRG00001006383) #33	Lmo2 (ENSCGRG00001003942) #34	ENSCGRG00001002101	Fbxo3 (ENSCGRG00001019997) #36	ENSCGRG00001019416 #37	A930018P22Rik (ENSCGRG00001018837)	D430041D05Rik (ENSCGRG00001017776)
Murinae	ANCESTRAL SPECIES	1	ENSGT00940000157226.f	ENSGT00940000154860	ENSGT00390000006196 #7	ENSGT00390000010991 #8	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426 #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a #33	ENSGT00940000160199 #34	ENSGT00940000153571.b #36	ENSGT00390000016309 #37	ENSGT00390000002169	ENSGT00530000063472.b.b.a.b	ENSGT00940000155960.b
Mus	ANCESTRAL SPECIES	1	ENSGT00940000157226.f	ENSGT00940000154860	ENSGT00390000006196 #7	ENSGT00390000010991 #8	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426 #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a #33	ENSGT00940000160199 #34	ENSGT00940000153571.b #36	ENSGT00390000016309.j #37	ENSGT00390000002169	ENSGT00530000063472.b.b.a.b	ENSGT00940000155960.b
Mus_A	ANCESTRAL SPECIES		ENSGT00940000157226.f	ENSGT00940000154860	ENSGT00390000006196 #7	ENSGT00390000010991 #8	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426 #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a #33	ENSGT00940000160199 #34	ENSGT00860000136352	ENSGT00940000153571.b #36	ENSGT00390000016309.j #37	ENSGT00390000002169	ENSGT00530000063472.b.b.a.b
Mus_B	ANCESTRAL SPECIES	1	ENSGT00940000157226.f	ENSGT00940000154860	ENSGT00390000006196 #7	ENSGT00390000010991 #8	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426 #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a #33	ENSGT00940000160199 #34	ENSGT00860000136352	ENSGT00940000153571.b #36	ENSGT00390000016309.j #37	ENSGT00390000002169	ENSGT00530000063472.b.b.a.b
Mouse	MODERN SPECIES	11	Alkbh3 (ENSMUSG00000040174)	Hsd17b12 (ENSMUSG00000027195)	Ttc17 (ENSMUSG00000027194) #7	Api5 (ENSMUSG00000027193) #8	Lrrc4c (ENSMUSG00000050587) #9	Iftap (ENSMUSG00000027165) #10	Rag2 (ENSMUSG00000032864) #11	Rag1 (ENSMUSG00000061311) #12	Traf6 (ENSMUSG00000027164) #13	Prr5l (ENSMUSG00000032841) #14	Commd9 (ENSMUSG00000027163) #15	Ldlrad3 (ENSMUSG00000048058) #16	Trim44 (ENSMUSG00000027189) #19	Fjx1 (ENSMUSG00000075012) #20	Pamr1 (ENSMUSG00000027188) #21	Slc1a2 (ENSMUSG00000005089) #22	Cd44 (ENSMUSG00000005087) #24	Pdhx (ENSMUSG00000010914) #25	Apip (ENSMUSG00000010911) #26	Ehf (ENSMUSG00000012350) #27	Elf5 (ENSMUSG00000027186) #28	Cat (ENSMUSG00000027187) #29	Abtb2 (ENSMUSG00000032724) #31	Nat10 (ENSMUSG00000027185) #32	Caprin1 (ENSMUSG00000027184) #33	Lmo2 (ENSMUSG00000032698) #34	Fbxo3 (ENSMUSG00000027180) #36	Cd59b (ENSMUSG00000068686) #37	Cd59a (ENSMUSG00000032679) #37	A930018P22Rik (ENSMUSG00000032671)	D430041D05Rik (ENSMUSG00000068373)
Mus_C	ANCESTRAL SPECIES		ENSGT00940000157226.f	ENSGT00940000154860	ENSGT00390000006196 #7	ENSGT00390000010991 #8	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426 #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a #33	ENSGT00940000160199 #34	ENSGT00860000136352	ENSGT00940000153571.b #36	ENSGT00390000016309.j #37	ENSGT00390000002169	ENSGT00530000063472.b.b.a.b
Steppe mouse	MODERN SPECIES	12					Iftap (ENSMSIG00000004799) #10	Rag2 (ENSMSIG00000004837) #11	Rag1 (ENSMSIG00000004846) #12	Traf6 (ENSMSIG00000004857) #13	Prr5l (ENSMSIG00000004870) #14	Commd9 (ENSMSIG00000004921) #15	Ldlrad3 (ENSMSIG00000004965) #16	ENSMSIG00000004991	Trim44 (ENSMSIG00000005008) #19	Fjx1 (ENSMSIG00000005059) #20	Pamr1 (ENSMSIG00000005073) #21	Slc1a2 (ENSMSIG00000005100) #22	Cd44 (ENSMSIG00000005261) #24	Pdhx (ENSMSIG00000006094) #25	ENSMSIG00000006147 #26	Ehf (ENSMSIG00000006198) #27	Elf5 (ENSMSIG00000006297) #28	Cat (ENSMSIG00000006347) #29	Abtb2 (ENSMSIG00000006424) #31	ENSMSIG00000006529	Nat10 (ENSMSIG00000006539) #32	Caprin1 (ENSMSIG00000006606) #33	Lmo2 (ENSMSIG00000006713) #34	ENSMSIG00000006746	Fbxo3 (ENSMSIG00000006767) #36
spretus	MODERN SPECIES	11	Alkbh3 (MGP_SPRETEiJ_G0024905)	Hsd17b12 (MGP_SPRETEiJ_G0024906)	Ttc17 (MGP_SPRETEiJ_G0024907) #7	Api5 (MGP_SPRETEiJ_G0024908) #8	Lrrc4c (MGP_SPRETEiJ_G0024909) #9	Iftap (MGP_SPRETEiJ_G0024910) #10	Rag2 (MGP_SPRETEiJ_G0024911) #11	Rag1 (MGP_SPRETEiJ_G0024912) #12	Traf6 (MGP_SPRETEiJ_G0024913) #13	Prr5l (MGP_SPRETEiJ_G0024914) #14	Commd9 (MGP_SPRETEiJ_G0024915) #15	Ldlrad3 (MGP_SPRETEiJ_G0024916) #16	Trim44 (MGP_SPRETEiJ_G0024917) #19	Fjx1 (MGP_SPRETEiJ_G0024918) #20	Pamr1 (MGP_SPRETEiJ_G0024919) #21	Slc1a2 (MGP_SPRETEiJ_G0024920) #22	Cd44 (MGP_SPRETEiJ_G0024921) #24	Pdhx (MGP_SPRETEiJ_G0024922) #25	Apip (MGP_SPRETEiJ_G0024923) #26	Ehf (MGP_SPRETEiJ_G0024924) #27	Elf5 (MGP_SPRETEiJ_G0024925) #28	Cat (MGP_SPRETEiJ_G0024926) #29	Abtb2 (MGP_SPRETEiJ_G0024927) #31	Nat10 (MGP_SPRETEiJ_G0024928) #32	Caprin1 (MGP_SPRETEiJ_G0024929) #33	Lmo2 (MGP_SPRETEiJ_G0024930) #34	MGP_SPRETEiJ_G0024931	Fbxo3 (MGP_SPRETEiJ_G0024932) #36	Cd59a (MGP_SPRETEiJ_G0024933) #37	A930018P22Rik (MGP_SPRETEiJ_G0024935)	D430041D05Rik (MGP_SPRETEiJ_G0024936)
Ryukyu mouse	MODERN SPECIES	11	Alkbh3 (MGP_CAROLIEiJ_G0023995)	MGP_CAROLIEiJ_G0023996	Ttc17 (MGP_CAROLIEiJ_G0023997) #7	Api5 (MGP_CAROLIEiJ_G0023998) #8	Lrrc4c (MGP_CAROLIEiJ_G0023999) #9	Iftap (MGP_CAROLIEiJ_G0024000) #10	Rag2 (MGP_CAROLIEiJ_G0024001) #11	Rag1 (MGP_CAROLIEiJ_G0024002) #12	Traf6 (MGP_CAROLIEiJ_G0024003) #13	Prr5l (MGP_CAROLIEiJ_G0024004) #14	Commd9 (MGP_CAROLIEiJ_G0024005) #15	Ldlrad3 (MGP_CAROLIEiJ_G0024006) #16	Trim44 (MGP_CAROLIEiJ_G0024007) #19	Fjx1 (MGP_CAROLIEiJ_G0024008) #20	Pamr1 (MGP_CAROLIEiJ_G0024009) #21	Slc1a2 (MGP_CAROLIEiJ_G0024010) #22	Cd44 (MGP_CAROLIEiJ_G0024011) #24	Pdhx (MGP_CAROLIEiJ_G0024012) #25	Apip (MGP_CAROLIEiJ_G0024013) #26	Ehf (MGP_CAROLIEiJ_G0024014) #27	Elf5 (MGP_CAROLIEiJ_G0024015) #28	Cat (MGP_CAROLIEiJ_G0024016) #29	Abtb2 (MGP_CAROLIEiJ_G0024017) #31	MGP_CAROLIEiJ_G0024018 #32	Caprin1 (MGP_CAROLIEiJ_G0024019) #33	Lmo2 (MGP_CAROLIEiJ_G0024020) #34	MGP_CAROLIEiJ_G0024021	Fbxo3 (MGP_CAROLIEiJ_G0024022) #36	A930018P22Rik (MGP_CAROLIEiJ_G0024023)	MGP_CAROLIEiJ_G0024024	Hipk3 (MGP_CAROLIEiJ_G0024025)
Shrew mouse	MODERN SPECIES	16	Alkbh3 (MGP_PahariEiJ_G0025431)	Hsd17b12 (MGP_PahariEiJ_G0025432)	Ttc17 (MGP_PahariEiJ_G0025433) #7	Api5 (MGP_PahariEiJ_G0025434) #8	Lrrc4c (MGP_PahariEiJ_G0025435) #9	MGP_PahariEiJ_G0025436 #10	Rag2 (MGP_PahariEiJ_G0025437) #11	Rag1 (MGP_PahariEiJ_G0025438) #12	Traf6 (MGP_PahariEiJ_G0025439) #13	Prr5l (MGP_PahariEiJ_G0025440) #14	Commd9 (MGP_PahariEiJ_G0025441) #15	Ldlrad3 (MGP_PahariEiJ_G0025442) #16	Trim44 (MGP_PahariEiJ_G0025443) #19	Fjx1 (MGP_PahariEiJ_G0025444) #20	Pamr1 (MGP_PahariEiJ_G0025445) #21	Slc1a2 (MGP_PahariEiJ_G0025446) #22	Cd44 (MGP_PahariEiJ_G0025447) #24	Pdhx (MGP_PahariEiJ_G0025448) #25	Apip (MGP_PahariEiJ_G0025449) #26	Ehf (MGP_PahariEiJ_G0025450) #27	Elf5 (MGP_PahariEiJ_G0025451) #28	Cat (MGP_PahariEiJ_G0025452) #29	Abtb2 (MGP_PahariEiJ_G0025453) #31	Nat10 (MGP_PahariEiJ_G0025454) #32	Caprin1 (MGP_PahariEiJ_G0025455) #33	Lmo2 (MGP_PahariEiJ_G0025456) #34	MGP_PahariEiJ_G0025457	Fbxo3 (MGP_PahariEiJ_G0025458) #36	MGP_PahariEiJ_G0025459 #37	MGP_PahariEiJ_G0025460 #37	A930018P22Rik (MGP_PahariEiJ_G0025461)
Rat	MODERN SPECIES	13	ENSRNOG00000066316	Lrrc4c (ENSRNOG00000029798) #9	AABR07053065.1 (ENSRNOG00000004381)	LOC499843 (ENSRNOG00000032177)	Iftap (ENSRNOG00000037567) #10	Rag2 (ENSRNOG00000004623) #11	Rag1 (ENSRNOG00000004630) #12	Traf6 (ENSRNOG00000004639) #13	Prr5l (ENSRNOG00000004666) #14	Commd9 (ENSRNOG00000004755) #15	Ldlrad3 (ENSRNOG00000058157) #16	Rpl21 (ENSRNOG00000069969)	Trim44 (ENSRNOG00000005191) #19	Fjx1 (ENSRNOG00000005347) #20	Pamr1 (ENSRNOG00000005348) #21	Slc1a2 (ENSRNOG00000005479) #22	Cd44 (ENSRNOG00000006094) #24	Pdhx (ENSRNOG00000006947) #25	Apip (ENSRNOG00000007446) #26	Ehf (ENSRNOG00000007484) #27	Elf5 (ENSRNOG00000008282) #28	Cat (ENSRNOG00000008364) #29	Abtb2 (ENSRNOG00000008510) #31	Nat10 (ENSRNOG00000008663) #32	Caprin1 (ENSRNOG00000009152) #33	ENSRNOG00000063191	Lmo2 (ENSRNOG00000009401) #34	Fbxo3 (ENSRNOG00000009549) #36	Cd59 (ENSRNOG00000042821) #37	RGD1563222 (ENSRNOG00000010963)	LOC100362814 (ENSRNOG00000011132)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1631						Iftap (ENSNGAG00000018262) #10	Rag2 (ENSNGAG00000015708) #11	Rag1 (ENSNGAG00000006347) #12	Traf6 (ENSNGAG00000018446) #13	ENSNGAG00000011864	Prr5l (ENSNGAG00000021774) #14	Commd9 (ENSNGAG00000015597) #15	Ldlrad3 (ENSNGAG00000004668) #16	Trim44 (ENSNGAG00000014577) #19	Pamr1 (ENSNGAG00000018952) #21	Slc1a2 (ENSNGAG00000011178) #22	Cd44 (ENSNGAG00000019111) #24	Pdhx (ENSNGAG00000023421) #25	Apip (ENSNGAG00000022366) #26	Ehf (ENSNGAG00000022135) #27	Elf5 (ENSNGAG00000021632) #28	Cat (ENSNGAG00000000722) #29	Abtb2 (ENSNGAG00000010042) #31	Nat10 (ENSNGAG00000013486) #32	Caprin1 (ENSNGAG00000006106) #33
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00940000157226	ENSGT00940000154860	ENSGT00390000006196 #7	ENSGT00390000010991 #8	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426 #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a #33	ENSGT00940000160199 #34	ENSGT00940000153571.b #36	ENSGT00390000016309 #37	ENSGT00390000002169	ENSGT00530000063472.b.b.a.b	ENSGT00940000155960.b
Hystricomorpha	ANCESTRAL SPECIES	16	ENSGT00940000157226	ENSGT00940000154860	ENSGT00390000006196 #7	ENSGT00390000010991.p.a #8	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426 #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a.b #33	ENSGT00940000160199 #34	ENSGT00940000153571.b #36	ENSGT00390000016309 #37	ENSGT00390000002169	ENSGT00530000063472.b.b.a.b	ENSGT00940000155960.b
Naked mole-rat female	MODERN SPECIES	14	LRRC4C (ENSHGLG00000042650) #9	ENSHGLG00000041917	ENSHGLG00000044878	IFTAP (ENSHGLG00000007037) #10	RAG2 (ENSHGLG00000020564) #11	RAG1 (ENSHGLG00000020565) #12	TRAF6 (ENSHGLG00000010513) #13	PRR5L (ENSHGLG00000006197) #14	COMMD9 (ENSHGLG00000039189) #15	LDLRAD3 (ENSHGLG00000009909) #16	ENSHGLG00000035280	TRIM44 (ENSHGLG00000006623) #19	FJX1 (ENSHGLG00000038500) #20	ENSHGLG00000038577	PAMR1 (ENSHGLG00000007733) #21	SLC1A2 (ENSHGLG00000010072) #22	CD44 (ENSHGLG00000011767) #24	ENSHGLG00000047526	ENSHGLG00000040571	ENSHGLG00000010978 #25	APIP (ENSHGLG00000011839) #26	EHF (ENSHGLG00000009758) #27	ELF5 (ENSHGLG00000011019) #28	CAT (ENSHGLG00000011741) #29	ENSHGLG00000016446 #31	NAT10 (ENSHGLG00000016891) #32	ENSHGLG00000018658 #33	ENSHGLG00000009842	ENSHGLG00000006506	ENSHGLG00000035097	ENSHGLG00000048933 #34
Hystricomorpha_a	ANCESTRAL SPECIES	12	ENSGT00940000154860	ENSGT00390000006196 #7	ENSGT00390000010991.o #8	ENSGT00940000155035.e.b	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426 #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a.b #33	ENSGT00940000160199 #34	ENSGT00940000153571.b #36	ENSGT00390000016309 #37	ENSGT00390000002169	ENSGT00530000063472.b.b.a.b	ENSGT00940000155960.b
Guinea pig	MODERN SPECIES	92					ENSCPOG00000020978	IFTAP (ENSCPOG00000012798) #10	RAG2 (ENSCPOG00000020441) #11	RAG1 (ENSCPOG00000004516) #12	TRAF6 (ENSCPOG00000004507) #13	PRR5L (ENSCPOG00000030786) #14	COMMD9 (ENSCPOG00000010648) #15	LDLRAD3 (ENSCPOG00000035009) #16	TRIM44 (ENSCPOG00000011263) #19	FJX1 (ENSCPOG00000022249) #20	PAMR1 (ENSCPOG00000007812) #21	SLC1A2 (ENSCPOG00000007801) #22	CD44 (ENSCPOG00000007792) #24	PDHX (ENSCPOG00000003099) #25	APIP (ENSCPOG00000003097) #26	EHF (ENSCPOG00000012596) #27	ELF5 (ENSCPOG00000012593) #28	CAT (ENSCPOG00000012582) #29	ABTB2 (ENSCPOG00000020779) #31	NAT10 (ENSCPOG00000015736) #32	CAPRIN1 (ENSCPOG00000015734) #33	LMO2 (ENSCPOG00000026645) #34	FBXO3 (ENSCPOG00000013568) #36	C11orf91 (ENSCPOG00000023939)	KIAA1549L (ENSCPOG00000005350)	HIPK3 (ENSCPOG00000002078)	CSTF3 (ENSCPOG00000005545)
Hystricomorpha_b	ANCESTRAL SPECIES	10	ENSGT00940000154860	ENSGT00390000006196 #7	ENSGT00390000010991.o #8	ENSGT00940000155035.e.b	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426 #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a.b #33	ENSGT00940000160199 #34	ENSGT00940000153571.b #36	ENSGT00390000016309 #37	ENSGT00390000002169	ENSGT00530000063472.b.b.a.b	ENSGT00940000155960.b
Long-tailed chinchilla	MODERN SPECIES	129	API5 (ENSCLAG00000013707) #8	ENSCLAG00000015133	LRRC4C (ENSCLAG00000015479) #9	ENSCLAG00000013706	ENSCLAG00000017889	IFTAP (ENSCLAG00000016504) #10	RAG2 (ENSCLAG00000016493) #11	RAG1 (ENSCLAG00000015510) #12	TRAF6 (ENSCLAG00000015588) #13	PRR5L (ENSCLAG00000015373) #14	COMMD9 (ENSCLAG00000014761) #15	LDLRAD3 (ENSCLAG00000013692) #16	TRIM44 (ENSCLAG00000014212) #19	FJX1 (ENSCLAG00000014978) #20	PAMR1 (ENSCLAG00000014744) #21	SLC1A2 (ENSCLAG00000014237) #22	ENSCLAG00000015376 #24	PDHX (ENSCLAG00000014466) #25	APIP (ENSCLAG00000014703) #26	EHF (ENSCLAG00000017235) #27	ELF5 (ENSCLAG00000013934) #28	CAT (ENSCLAG00000013690) #29	ABTB2 (ENSCLAG00000014834) #31	NAT10 (ENSCLAG00000016692) #32	ENSCLAG00000015468 #33	LMO2 (ENSCLAG00000015594) #34	FBXO3 (ENSCLAG00000015193) #36	ENSCLAG00000014692 #37	C11orf91 (ENSCLAG00000015126)	KIAA1549L (ENSCLAG00000014544)	HIPK3 (ENSCLAG00000015597)
Degu	MODERN SPECIES	59	ENSODEG00000020406	ENSODEG00000020370	LRRC4C (ENSODEG00000020475) #9	ENSODEG00000020466	IFTAP (ENSODEG00000016540) #10	RAG2 (ENSODEG00000020447) #11	RAG1 (ENSODEG00000020338) #12	TRAF6 (ENSODEG00000017071) #13	PRR5L (ENSODEG00000016913) #14	COMMD9 (ENSODEG00000017403) #15	LDLRAD3 (ENSODEG00000017384) #16	ENSODEG00000016381 #19	FJX1 (ENSODEG00000016768) #20	ENSODEG00000016254	PAMR1 (ENSODEG00000016795) #21	SLC1A2 (ENSODEG00000016926) #22	ENSODEG00000016446 #24	PDHX (ENSODEG00000016591) #25	ENSODEG00000016598	ENSODEG00000016570 #26	EHF (ENSODEG00000017375) #27	ELF5 (ENSODEG00000016572) #28	CAT (ENSODEG00000016770) #29	ENSODEG00000016618	ABTB2 (ENSODEG00000016924) #31	NAT10 (ENSODEG00000017069) #32	CAPRIN1 (ENSODEG00000016723) #33	ENSODEG00000020372	LMO2 (ENSODEG00000016866) #34	FBXO3 (ENSODEG00000016802) #36	ENSODEG00000016777
Sciuridae	ANCESTRAL SPECIES	2	ENSGT00940000157226	ENSGT00940000154860	ENSGT00390000006196 #7	ENSGT00390000010991 #8	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426 #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00440000034605.f.a #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140 #32	ENSGT00940000153438.a #33	ENSGT00940000160199 #34	ENSGT00940000153571.b #36	ENSGT00390000016309 #37	ENSGT00390000002169	ENSGT00530000063472.b.b.a.b	ENSGT00940000155960.b
Marmotini	ANCESTRAL SPECIES	22	ENSGT00390000016821	ENSGT00940000157226	ENSGT00940000154860	ENSGT00390000006196 #7	ENSGT00390000010991 #8	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426 #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00440000034605.f.a #19	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140.g #32	ENSGT00940000153438.a #33	ENSGT00940000160199 #34	ENSGT00940000153571.b #36	ENSGT00390000016309 #37	ENSGT00390000002169	ENSGT00530000063472.b.b.a.b	ENSGT00940000155960.b
Marmotini_b	ANCESTRAL SPECIES	23	ENSGT00390000016821	ENSGT00940000157226	ENSGT00940000154860	ENSGT00390000006196 #7	ENSGT00390000010991 #8	ENSGT00940000157405 #9	ENSGT00390000013149 #10	ENSGT00390000012559 #11	ENSGT00390000008679 #12	ENSGT00940000155426 #13	ENSGT00530000063981.b #14	ENSGT00390000006218 #15	ENSGT00940000160574 #16	ENSGT00440000034605.f.a #19	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #24	ENSGT00940000156046 #25	ENSGT00390000001680 #26	ENSGT00940000159310 #27	ENSGT00940000160980 #28	ENSGT00390000018100 #29	ENSGT00940000157661 #31	ENSGT00390000009140.g #32	ENSGT00940000153438.a #33	ENSGT00940000160199 #34	ENSGT00940000153571.b #36	ENSGT00390000016309 #37	ENSGT00390000002169	ENSGT00530000063472.b.b.a.b	ENSGT00940000155960.b
Arctic ground squirrel	MODERN SPECIES	10	ALKBH3 (ENSUPAG00010001256)	HSD17B12 (ENSUPAG00010001237)	ENSUPAG00010001201 #7	API5 (ENSUPAG00010001168) #8	ENSUPAG00010001157	LRRC4C (ENSUPAG00010001136) #9	IFTAP (ENSUPAG00010001086) #10	RAG2 (ENSUPAG00010001080) #11	RAG1 (ENSUPAG00010001077) #12	TRAF6 (ENSUPAG00010001061) #13	PRR5L (ENSUPAG00010001016) #14	COMMD9 (ENSUPAG00010001008) #15	LDLRAD3 (ENSUPAG00010000987) #16	ENSUPAG00010000969 #19	PAMR1 (ENSUPAG00010000955) #21	SLC1A2 (ENSUPAG00010000901) #22	CD44 (ENSUPAG00010000106) #24	PDHX (ENSUPAG00010000084) #25	APIP (ENSUPAG00010000057) #26	EHF (ENSUPAG00010019516) #27	ELF5 (ENSUPAG00010019491) #28	CAT (ENSUPAG00010019472) #29	ABTB2 (ENSUPAG00010019465) #31	NAT10 (ENSUPAG00010019438) #32	CAPRIN1 (ENSUPAG00010019403) #33	LMO2 (ENSUPAG00010019388) #34	FBXO3 (ENSUPAG00010019358) #36	ENSUPAG00010019350 #37	C11orf91 (ENSUPAG00010019347)	KIAA1549L (ENSUPAG00010019291)	HIPK3 (ENSUPAG00010019217)
Squirrel	MODERN SPECIES	133							IFTAP (ENSSTOG00000029068) #10	RAG2 (ENSSTOG00000012558) #11	RAG1 (ENSSTOG00000025584) #12	TRAF6 (ENSSTOG00000007303) #13	PRR5L (ENSSTOG00000022180) #14	COMMD9 (ENSSTOG00000007267) #15	LDLRAD3 (ENSSTOG00000007228) #16	TRIM44 (ENSSTOG00000023760) #19	PAMR1 (ENSSTOG00000000826) #21	SLC1A2 (ENSSTOG00000000822) #22	ENSSTOG00000000813 #24	PDHX (ENSSTOG00000004403) #25	APIP (ENSSTOG00000004390) #26	ENSSTOG00000008622 #27	ELF5 (ENSSTOG00000008610) #28	CAT (ENSSTOG00000008595) #29	ABTB2 (ENSSTOG00000001839) #31	ENSSTOG00000001817 #32	CAPRIN1 (ENSSTOG00000006945) #33	LMO2 (ENSSTOG00000024319) #34	FBXO3 (ENSSTOG00000016405) #36	ENSSTOG00000011395 #37	C11orf91 (ENSSTOG00000026942)	KIAA1549L (ENSSTOG00000011381)	HIPK3 (ENSSTOG00000009714)
Alpin marmot	MODERN SPECIES	3	ALKBH3 (ENSMMMG00000011630)	ENSMMMG00000011626	HSD17B12 (ENSMMMG00000011610)	TTC17 (ENSMMMG00000011550) #7	API5 (ENSMMMG00000011483) #8	LRRC4C (ENSMMMG00000011362) #9	IFTAP (ENSMMMG00000011311) #10	RAG2 (ENSMMMG00000011304) #11	RAG1 (ENSMMMG00000011298) #12	TRAF6 (ENSMMMG00000011285) #13	PRR5L (ENSMMMG00000011238) #14	COMMD9 (ENSMMMG00000011235) #15	LDLRAD3 (ENSMMMG00000011216) #16	TRIM44 (ENSMMMG00000011195) #19	PAMR1 (ENSMMMG00000011162) #21	SLC1A2 (ENSMMMG00000011014) #22	CD44 (ENSMMMG00000010323) #24	PDHX (ENSMMMG00000010279) #25	APIP (ENSMMMG00000010262) #26	EHF (ENSMMMG00000010179) #27	ELF5 (ENSMMMG00000010124) #28	CAT (ENSMMMG00000010087) #29	ABTB2 (ENSMMMG00000010060) #31	NAT10 (ENSMMMG00000009992) #32	CAPRIN1 (ENSMMMG00000008164) #33	LMO2 (ENSMMMG00000008095) #34	FBXO3 (ENSMMMG00000008035) #36	ENSMMMG00000008026 #37	C11orf91 (ENSMMMG00000008017)	KIAA1549L (ENSMMMG00000007942)	HIPK3 (ENSMMMG00000007810)
Eurasian red squirrel	MODERN SPECIES	2	TTC17 (ENSSVLG00005018176) #7	ENSSVLG00005018298 #8	LRRC4C (ENSSVLG00005018979) #9	ENSSVLG00005019010	ENSSVLG00005019047 #10	RAG2 (ENSSVLG00005019171) #11	RAG1 (ENSSVLG00005019195) #12	TRAF6 (ENSSVLG00005019219) #13	PRR5L (ENSSVLG00005019340) #14	COMMD9 (ENSSVLG00005019522) #15	LDLRAD3 (ENSSVLG00005019672) #16	ENSSVLG00005019782 #19	ENSSVLG00005019851	FJX1 (ENSSVLG00005019889) #20	PAMR1 (ENSSVLG00005019988) #21	SLC1A2 (ENSSVLG00005020571) #22	CD44 (ENSSVLG00005021288) #24	PDHX (ENSSVLG00005021554) #25	APIP (ENSSVLG00005021719) #26	ENSSVLG00005021768 #27	ELF5 (ENSSVLG00005021853) #28	CAT (ENSSVLG00005022137) #29	ENSSVLG00005022214	ABTB2 (ENSSVLG00005004819) #31	NAT10 (ENSSVLG00005004900) #32	CAPRIN1 (ENSSVLG00005004951) #33	LMO2 (ENSSVLG00005005066) #34	FBXO3 (ENSSVLG00005005111) #36	ENSSVLG00005005193 #37	C11orf91 (ENSSVLG00005005211)	KIAA1549L (ENSSVLG00005005254)