Artiodactyla_a	ANCESTRAL SPECIES	1	ENSGT00940000157226	ENSGT00940000154860	ENSGT00390000006196 #7	ENSGT00390000010991 #8	ENSGT00940000157405 #11	ENSGT00390000013149 #12	ENSGT00390000012559 #13	ENSGT00390000008679 #14	ENSGT00940000155426 #15	ENSGT00530000063981.b #16	ENSGT00390000006218 #17	ENSGT00940000160574 #18	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #23	ENSGT00940000156046 #24	ENSGT00390000001680 #25	ENSGT00940000159310 #26	ENSGT00940000160980 #27	ENSGT00390000018100 #28	ENSGT00940000157661 #29	ENSGT00390000009140 #30	ENSGT00940000153438.a #31	ENSGT00940000160199 #32	ENSGT00940000153571.b #33	ENSGT00390000016309 #34	ENSGT00390000002169 #35	ENSGT00530000063472.b.b.a.b #36	ENSGT00940000155960.b #37
Artiodactyla_b	ANCESTRAL SPECIES	1	ENSGT00940000157226	ENSGT00940000154860	ENSGT00390000006196 #7	ENSGT00390000010991 #8	ENSGT00940000157405 #11	ENSGT00390000013149 #12	ENSGT00390000012559 #13	ENSGT00390000008679 #14	ENSGT00940000155426 #15	ENSGT00530000063981.b #16	ENSGT00390000006218 #17	ENSGT00940000160574 #18	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #23	ENSGT00940000156046 #24	ENSGT00390000001680 #25	ENSGT00940000159310 #26	ENSGT00940000160980 #27	ENSGT00390000018100 #28	ENSGT00940000157661 #29	ENSGT00390000009140 #30	ENSGT00940000153438.a #31	ENSGT00940000160199 #32	ENSGT00940000153571.b #33	ENSGT00390000016309 #34	ENSGT00390000002169 #35	ENSGT00530000063472.b.b.a.b #36	ENSGT00940000155960.b #37
Cetacea	ANCESTRAL SPECIES	4	ENSGT00390000010991 #8	ENSGT00390000016292.i.a.b #9	ENSGT00930000151314.e #10	ENSGT00390000017491.s.b.g	ENSGT00940000157405 #11	ENSGT00390000013149 #12	ENSGT00390000012559 #13	ENSGT00390000008679 #14	ENSGT00940000155426 #15	ENSGT00530000063981.b #16	ENSGT00390000006218 #17	ENSGT00940000160574 #18	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #23	ENSGT00940000156046 #24	ENSGT00390000001680 #25	ENSGT00940000159310 #26	ENSGT00940000160980 #27	ENSGT00390000018100 #28	ENSGT00940000157661 #29	ENSGT00390000009140 #30	ENSGT00940000153438.a #31	ENSGT00940000160199 #32	ENSGT00940000153571.b #33	ENSGT00390000016309.a #34	ENSGT00390000002169 #35	ENSGT00530000063472.b.b.a.b #36	ENSGT00940000155960.b #37
Odontoceti	ANCESTRAL SPECIES	4	ENSGT00390000010991 #8	ENSGT00390000016292.i.a.b #9	ENSGT00930000151314.e #10	ENSGT00390000017491.s.b.g	ENSGT00940000157405 #11	ENSGT00390000013149 #12	ENSGT00390000012559 #13	ENSGT00390000008679 #14	ENSGT00940000155426 #15	ENSGT00530000063981.b #16	ENSGT00390000006218 #17	ENSGT00940000160574 #18	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #23	ENSGT00940000156046 #24	ENSGT00390000001680 #25	ENSGT00940000159310 #26	ENSGT00940000160980 #27	ENSGT00390000018100 #28	ENSGT00940000157661 #29	ENSGT00390000009140 #30	ENSGT00940000153438.a #31	ENSGT00940000160199 #32	ENSGT00940000153571.b #33	ENSGT00390000016309.a #34	ENSGT00390000002169 #35	ENSGT00530000063472.b.b.a.b #36	ENSGT00940000155960.b #37
Odontoceti_a	ANCESTRAL SPECIES	4	ENSGT00390000010991 #8	ENSGT00390000016292.i.a.b #9	ENSGT00930000151314.e #10	ENSGT00390000017491.s.b.g	ENSGT00940000157405 #11	ENSGT00390000013149 #12	ENSGT00390000012559 #13	ENSGT00390000008679 #14	ENSGT00940000155426 #15	ENSGT00530000063981.b #16	ENSGT00390000006218 #17	ENSGT00940000160574 #18	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #23	ENSGT00940000156046 #24	ENSGT00390000001680 #25	ENSGT00940000159310 #26	ENSGT00940000160980 #27	ENSGT00390000018100 #28	ENSGT00940000157661 #29	ENSGT00390000009140 #30	ENSGT00940000153438.a #31	ENSGT00940000160199 #32	ENSGT00940000153571.b #33	ENSGT00390000016309.a #34	ENSGT00390000002169 #35	ENSGT00530000063472.b.b.a.b #36	ENSGT00940000155960.b #37
Odontoceti_b	ANCESTRAL SPECIES	4	ENSGT00390000010991 #8	ENSGT00390000016292.i.a.b #9	ENSGT00930000151314.e #10	ENSGT00390000017491.s.b.g	ENSGT00940000157405 #11	ENSGT00390000013149 #12	ENSGT00390000012559 #13	ENSGT00390000008679 #14	ENSGT00940000155426 #15	ENSGT00530000063981.b #16	ENSGT00390000006218 #17	ENSGT00940000160574 #18	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #23	ENSGT00940000156046 #24	ENSGT00390000001680 #25	ENSGT00940000159310 #26	ENSGT00940000160980 #27	ENSGT00390000018100 #28	ENSGT00940000157661 #29	ENSGT00390000009140 #30	ENSGT00940000153438.a #31	ENSGT00940000160199 #32	ENSGT00940000153571.b #33	ENSGT00390000016309.a #34	ENSGT00390000002169 #35	ENSGT00530000063472.b.b.a.b #36	ENSGT00940000155960.b #37
Monodontidae	ANCESTRAL SPECIES	2	ENSGT00390000010991 #8	ENSGT00390000016292.i.a.b #9	ENSGT00930000151314.e #10	ENSGT00390000017491.s.b.g	ENSGT00940000157405 #11	ENSGT00390000013149 #12	ENSGT00390000012559 #13	ENSGT00390000008679 #14	ENSGT00940000155426 #15	ENSGT00530000063981.b #16	ENSGT00390000006218 #17	ENSGT00940000160574 #18	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #23	ENSGT00940000156046 #24	ENSGT00390000001680 #25	ENSGT00940000159310 #26	ENSGT00940000160980 #27	ENSGT00390000018100 #28	ENSGT00940000157661 #29	ENSGT00390000009140 #30	ENSGT00940000153438.a #31	ENSGT00940000160199 #32	ENSGT00940000153571.b #33	ENSGT00390000016309.a #34	ENSGT00390000002169 #35	ENSGT00530000063472.b.b.a.b #36	ENSGT00940000155960.b #37
Narwhal	MODERN SPECIES	314	TTC17 (ENSMMNG00015016233) #7	API5 (ENSMMNG00015015999) #8	ENSMMNG00015015919 #9	ENSMMNG00015015888 #10	LRRC4C (ENSMMNG00015020998) #11	IFTAP (ENSMMNG00015020977) #12	RAG2 (ENSMMNG00015020969) #13	RAG1 (ENSMMNG00015020958) #14	TRAF6 (ENSMMNG00015020943) #15	PRR5L (ENSMMNG00015020929) #16	COMMD9 (ENSMMNG00015020902) #17	LDLRAD3 (ENSMMNG00015020881) #18	TRIM44 (ENSMMNG00015020855) #19	FJX1 (ENSMMNG00015020839) #20	PAMR1 (ENSMMNG00015020804) #21	SLC1A2 (ENSMMNG00015020614) #22	CD44 (ENSMMNG00015020401) #23	PDHX (ENSMMNG00015020321) #24	APIP (ENSMMNG00015020302) #25	EHF (ENSMMNG00015020278) #26	ELF5 (ENSMMNG00015020227) #27	CAT (ENSMMNG00015020166) #28	ABTB2 (ENSMMNG00015020118) #29	NAT10 (ENSMMNG00015020058) #30	CAPRIN1 (ENSMMNG00015019955) #31	LMO2 (ENSMMNG00015019906) #32	FBXO3 (ENSMMNG00015019842) #33	ENSMMNG00015019816 #34	C11orf91 (ENSMMNG00015019799) #35	KIAA1549L (ENSMMNG00015019709) #36	HIPK3 (ENSMMNG00015019654) #37
Beluga whale	MODERN SPECIES	32	ENSDLEG00000012772 #10	ENSDLEG00000012785	ENSDLEG00000012790	LRRC4C (ENSDLEG00000012796) #11	ENSDLEG00000012800	CUNH11orf74 (ENSDLEG00000012812) #12	RAG2 (ENSDLEG00000012831) #13	RAG1 (ENSDLEG00000012836) #14	TRAF6 (ENSDLEG00000012843) #15	PRR5L (ENSDLEG00000012871) #16	COMMD9 (ENSDLEG00000012880) #17	LDLRAD3 (ENSDLEG00000012917) #18	TRIM44 (ENSDLEG00000012932) #19	FJX1 (ENSDLEG00000012954) #20	PAMR1 (ENSDLEG00000012961) #21	SLC1A2 (ENSDLEG00000013009) #22	CD44 (ENSDLEG00000013125) #23	PDHX (ENSDLEG00000013346) #24	APIP (ENSDLEG00000013390) #25	EHF (ENSDLEG00000013404) #26	ELF5 (ENSDLEG00000013416) #27	CAT (ENSDLEG00000013434) #28	ABTB2 (ENSDLEG00000013511) #29	CAPRIN1 (ENSDLEG00000013754) #31	LMO2 (ENSDLEG00000013776) #32	FBXO3 (ENSDLEG00000013801) #33	CD59 (ENSDLEG00000013827) #34	CUNH11orf91 (ENSDLEG00000013835) #35	KIAA1549L (ENSDLEG00000013855) #36	HIPK3 (ENSDLEG00000013963) #37	CSTF3 (ENSDLEG00000014043)
Vaquita	MODERN SPECIES	19	ENSPSNG00000020355 #10	ENSPSNG00000020331	LRRC4C (ENSPSNG00000020317) #11	ENSPSNG00000020308	ENSPSNG00000020284	IFTAP (ENSPSNG00000020245) #12	RAG2 (ENSPSNG00000020227) #13	RAG1 (ENSPSNG00000020212) #14	TRAF6 (ENSPSNG00000020184) #15	PRR5L (ENSPSNG00000020077) #16	COMMD9 (ENSPSNG00000020006) #17	LDLRAD3 (ENSPSNG00000019913) #18	TRIM44 (ENSPSNG00000019844) #19	FJX1 (ENSPSNG00000019820) #20	PAMR1 (ENSPSNG00000019762) #21	SLC1A2 (ENSPSNG00000019163) #22	CD44 (ENSPSNG00000018554) #23	PDHX (ENSPSNG00000018369) #24	APIP (ENSPSNG00000018319) #25	EHF (ENSPSNG00000018151) #26	ELF5 (ENSPSNG00000017789) #27	CAT (ENSPSNG00000017719) #28	ENSPSNG00000017692	ENSPSNG00000017670 #29	NAT10 (ENSPSNG00000017510) #30	CAPRIN1 (ENSPSNG00000017392) #31	LMO2 (ENSPSNG00000017299) #32	FBXO3 (ENSPSNG00000017093) #33	ENSPSNG00000017059 #34	C11orf91 (ENSPSNG00000017031) #35	KIAA1549L (ENSPSNG00000016649) #36
Dolphin	MODERN SPECIES	3502															PAMR1 (ENSTTRG00000009130) #21	SLC1A2 (ENSTTRG00000009090) #22	CD44 (ENSTTRG00000009009) #23
Sperm whale	MODERN SPECIES	7	ENSPCTG00005013951 #9	ENSPCTG00005013926	ENSPCTG00005013896 #10	LRRC4C (ENSPCTG00005013853) #11	C16H11orf74 (ENSPCTG00005013719) #12	RAG2 (ENSPCTG00005013695) #13	RAG1 (ENSPCTG00005013675) #14	TRAF6 (ENSPCTG00005013602) #15	PRR5L (ENSPCTG00005013353) #16	COMMD9 (ENSPCTG00005013198) #17	LDLRAD3 (ENSPCTG00005013075) #18	TRIM44 (ENSPCTG00005012988) #19	FJX1 (ENSPCTG00005012957) #20	ENSPCTG00005012912	PAMR1 (ENSPCTG00005012627) #21	SLC1A2 (ENSPCTG00005011641) #22	CD44 (ENSPCTG00005011079) #23	PDHX (ENSPCTG00005010927) #24	APIP (ENSPCTG00005010863) #25	EHF (ENSPCTG00005010749) #26	ELF5 (ENSPCTG00005010589) #27	ENSPCTG00005010549	CAT (ENSPCTG00005010499) #28	NAT10 (ENSPCTG00005009740) #30	CAPRIN1 (ENSPCTG00005009279) #31	LMO2 (ENSPCTG00005009182) #32	FBXO3 (ENSPCTG00005009011) #33	CD59 (ENSPCTG00005008976) #34	C16H11orf91 (ENSPCTG00005016629) #35	KIAA1549L (ENSPCTG00005016154) #36	HIPK3 (ENSPCTG00005016025) #37
Blue whale	MODERN SPECIES	19	ENSBMSG00010013215 #10	ENSBMSG00010013207	LRRC4C (ENSBMSG00010013196) #11	ENSBMSG00010013188	ENSBMSG00010013173 #12	RAG2 (ENSBMSG00010013164) #13	RAG1 (ENSBMSG00010013155) #14	TRAF6 (ENSBMSG00010013148) #15	PRR5L (ENSBMSG00010013135) #16	COMMD9 (ENSBMSG00010013117) #17	ENSBMSG00010013107	LDLRAD3 (ENSBMSG00010013096) #18	ENSBMSG00010013080 #19	FJX1 (ENSBMSG00010013062) #20	PAMR1 (ENSBMSG00010013047) #21	SLC1A2 (ENSBMSG00010012885) #22	CD44 (ENSBMSG00010012733) #23	ENSBMSG00010012689	PDHX (ENSBMSG00010013305) #24	APIP (ENSBMSG00010013281) #25	EHF (ENSBMSG00010013242) #26	ELF5 (ENSBMSG00010013193) #27	CAT (ENSBMSG00010013166) #28	ABTB2 (ENSBMSG00010013147) #29	NAT10 (ENSBMSG00010013127) #30	CAPRIN1 (ENSBMSG00010013072) #31	LMO2 (ENSBMSG00010013039) #32	ENSBMSG00010013014 #33	ENSBMSG00010012987 #34	C11orf91 (ENSBMSG00010012976) #35	KIAA1549L (ENSBMSG00010012941) #36
Pecora	ANCESTRAL SPECIES	7	ENSGT00940000157226	ENSGT00940000154860	ENSGT00390000006196 #7	ENSGT00390000010991 #8	ENSGT00940000157405 #11	ENSGT00390000013149 #12	ENSGT00390000012559 #13	ENSGT00390000008679 #14	ENSGT00940000155426 #15	ENSGT00530000063981.b #16	ENSGT00390000006218 #17	ENSGT00940000160574 #18	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #23	ENSGT00940000156046 #24	ENSGT00390000001680 #25	ENSGT00940000159310 #26	ENSGT00940000160980 #27	ENSGT00390000018100 #28	ENSGT00940000157661 #29	ENSGT00390000009140 #30	ENSGT00940000153438.a #31	ENSGT00940000160199 #32	ENSGT00940000153571.b #33	ENSGT00390000016309 #34	ENSGT00390000002169 #35	ENSGT00530000063472.b.b.a.b #36	ENSGT00940000155960.b #37
Percora_a	ANCESTRAL SPECIES	6	ENSGT00940000157226	ENSGT00940000154860	ENSGT00390000006196 #7	ENSGT00390000010991 #8	ENSGT00940000157405 #11	ENSGT00390000013149 #12	ENSGT00390000012559 #13	ENSGT00390000008679 #14	ENSGT00940000155426 #15	ENSGT00530000063981.b #16	ENSGT00390000006218 #17	ENSGT00940000160574 #18	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #23	ENSGT00940000156046 #24	ENSGT00390000001680 #25	ENSGT00940000159310 #26	ENSGT00940000160980 #27	ENSGT00390000018100 #28	ENSGT00940000157661 #29	ENSGT00390000009140 #30	ENSGT00940000153438.a #31	ENSGT00940000160199 #32	ENSGT00940000153571.b #33	ENSGT00390000016309 #34	ENSGT00390000002169 #35	ENSGT00530000063472.b.b.a.b #36	ENSGT00940000155960.b #37
Bovidae	ANCESTRAL SPECIES	6	ENSGT00940000157226	ENSGT00940000154860	ENSGT00390000006196 #7	ENSGT00390000010991 #8	ENSGT00940000157405 #11	ENSGT00390000013149 #12	ENSGT00390000012559 #13	ENSGT00390000008679 #14	ENSGT00940000155426 #15	ENSGT00530000063981.b #16	ENSGT00390000006218 #17	ENSGT00940000160574 #18	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #23	ENSGT00940000156046 #24	ENSGT00390000001680 #25	ENSGT00940000159310 #26	ENSGT00940000160980 #27	ENSGT00390000018100 #28	ENSGT00940000157661 #29	ENSGT00390000009140 #30	ENSGT00940000153438.a #31	ENSGT00940000160199 #32	ENSGT00940000153571.b #33	ENSGT00390000016309 #34	ENSGT00390000002169 #35	ENSGT00530000063472.b.b.a.b #36	ENSGT00940000155960.b #37
Caprinae	ANCESTRAL SPECIES	6	ENSGT00940000154860	ENSGT00390000006196 #7	ENSGT00390000010991 #8	ENSGT01090000260040.b.b.b.b.b.a	ENSGT00940000157405 #11	ENSGT00390000013149 #12	ENSGT00390000012559 #13	ENSGT00390000008679 #14	ENSGT00940000155426 #15	ENSGT00530000063981.b #16	ENSGT00390000006218 #17	ENSGT00940000160574 #18	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #23	ENSGT00940000156046 #24	ENSGT00390000001680 #25	ENSGT00940000159310 #26	ENSGT00940000160980 #27	ENSGT00390000018100 #28	ENSGT00940000157661 #29	ENSGT00390000009140 #30	ENSGT00940000153438.a #31	ENSGT00940000160199 #32	ENSGT00940000153571.b #33	ENSGT00390000016309 #34	ENSGT00390000002169 #35	ENSGT00530000063472.b.b.a.b #36	ENSGT00940000155960.b #37
Rambouillet Sheep	MODERN SPECIES	6	ENSOARG00020017753	LRRC4C (ENSOARG00020017737) #11	ENSOARG00020017700	ENSOARG00020017646	ENSOARG00020017606 #12	RAG2 (ENSOARG00020017591) #13	RAG1 (ENSOARG00020017552) #14	TRAF6 (ENSOARG00020017492) #15	PRR5L (ENSOARG00020017314) #16	ENSOARG00020017291	COMMD9 (ENSOARG00020017119) #17	LDLRAD3 (ENSOARG00020016954) #18	TRIM44 (ENSOARG00020016896) #19	FJX1 (ENSOARG00020016861) #20	PAMR1 (ENSOARG00020016385) #21	SLC1A2 (ENSOARG00020014083) #22	PDHX (ENSOARG00020013235) #24	APIP (ENSOARG00020013162) #25	EHF (ENSOARG00020012876) #26	ELF5 (ENSOARG00020012261) #27	CAT (ENSOARG00020012114) #28	ABTB2 (ENSOARG00020011977) #29	NAT10 (ENSOARG00020011594) #30	CAPRIN1 (ENSOARG00020011413) #31	LMO2 (ENSOARG00020011313) #32	FBXO3 (ENSOARG00020011054) #33	CD59 (ENSOARG00020011000) #34	C11orf91 (ENSOARG00020010944) #35	KIAA1549L (ENSOARG00020010529) #36	HIPK3 (ENSOARG00020010376) #37	CSTF3 (ENSOARG00020009771)
Goat	MODERN SPECIES	6	HSD17B12 (ENSCHIG00000011795)	TTC17 (ENSCHIG00000011579) #7	API5 (ENSCHIG00000015343) #8	ENSCHIG00000008612	LRRC4C (ENSCHIG00000005885) #11	ENSCHIG00000010847 #12	RAG2 (ENSCHIG00000009200) #13	RAG1 (ENSCHIG00000013265) #14	TRAF6 (ENSCHIG00000015888) #15	PRR5L (ENSCHIG00000001684) #16	COMMD9 (ENSCHIG00000020550) #17	LDLRAD3 (ENSCHIG00000023229) #18	TRIM44 (ENSCHIG00000013533) #19	FJX1 (ENSCHIG00000001972) #20	PAMR1 (ENSCHIG00000018319) #21	SLC1A2 (ENSCHIG00000026938) #22	CD44 (ENSCHIG00000021491) #23	PDHX (ENSCHIG00000013247) #24	APIP (ENSCHIG00000025799) #25	EHF (ENSCHIG00000010459) #26	ELF5 (ENSCHIG00000014082) #27	CAT (ENSCHIG00000021227) #28	ABTB2 (ENSCHIG00000009432) #29	NAT10 (ENSCHIG00000026081) #30	CAPRIN1 (ENSCHIG00000017561) #31	LMO2 (ENSCHIG00000015059) #32	FBXO3 (ENSCHIG00000016044) #33	ENSCHIG00000003258 #34	C11orf91 (ENSCHIG00000020265) #35	KIAA1549L (ENSCHIG00000010337) #36	HIPK3 (ENSCHIG00000022013) #37
Bovinae	ANCESTRAL SPECIES	26	ENSGT00940000157226	ENSGT00940000154860	ENSGT00390000006196 #7	ENSGT00390000010991 #8	ENSGT00940000157405 #11	ENSGT00390000013149 #12	ENSGT00390000012559 #13	ENSGT00390000008679 #14	ENSGT00940000155426 #15	ENSGT00530000063981.b #16	ENSGT00390000006218 #17	ENSGT00940000160574 #18	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #23	ENSGT00940000156046 #24	ENSGT00390000001680 #25	ENSGT00940000159310 #26	ENSGT00940000160980 #27	ENSGT00390000018100 #28	ENSGT00940000157661 #29	ENSGT00390000009140 #30	ENSGT00940000153438.a #31	ENSGT00940000160199 #32	ENSGT00940000153571.b #33	ENSGT00390000016309 #34	ENSGT00390000002169 #35	ENSGT00530000063472.b.b.a.b #36	ENSGT00940000155960.b #37
Bos	ANCESTRAL SPECIES	25	ENSGT00390000006196 #7	ENSGT00390000010991 #8	ENSGT00950000185588	ENSGT00940000157405 #11	ENSGT00390000013149 #12	ENSGT00390000012559 #13	ENSGT00390000008679 #14	ENSGT00940000155426 #15	ENSGT00530000063981.b #16	ENSGT00390000006218 #17	ENSGT00940000160574 #18	ENSGT01100000263481.n.a.b.b.a.b.a.a.a.a.a	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #23	ENSGT00940000156046 #24	ENSGT00390000001680 #25	ENSGT00940000159310 #26	ENSGT00940000160980 #27	ENSGT00390000018100 #28	ENSGT00940000157661 #29	ENSGT00390000009140 #30	ENSGT00940000153438.a #31	ENSGT00940000160199 #32	ENSGT00940000153571.b #33	ENSGT00390000016309 #34	ENSGT00390000002169 #35	ENSGT00530000063472.b.b.a.b #36	ENSGT00940000155960.b #37
Bos_b	ANCESTRAL SPECIES	12	ENSGT00390000006196 #7	ENSGT00390000010991 #8	ENSGT00950000185588	ENSGT00940000157405 #11	ENSGT00390000013149 #12	ENSGT00390000012559 #13	ENSGT00390000008679 #14	ENSGT00940000155426 #15	ENSGT00530000063981.b #16	ENSGT00390000006218 #17	ENSGT00940000160574 #18	ENSGT01100000263481.n.a.b.b.a.b.a.a.a.a.a	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #23	ENSGT00940000156046 #24	ENSGT00390000001680 #25	ENSGT00940000159310 #26	ENSGT00940000160980 #27	ENSGT00390000018100 #28	ENSGT00940000157661 #29	ENSGT00390000009140 #30	ENSGT00940000153438.a #31	ENSGT00940000160199 #32	ENSGT00940000153571.b #33	ENSGT00390000016309 #34	ENSGT00390000002169 #35	ENSGT00530000063472.b.b.a.b #36	ENSGT00940000155960.b #37
Hybrid Bos Indicus	MODERN SPECIES	6	TTC17 (ENSBIXG00005006754) #7	ENSBIXG00005002693	API5 (ENSBIXG00005016658) #8	LRRC4C (ENSBIXG00005016515) #11	IFTAP (ENSBIXG00005016428) #12	RAG2 (ENSBIXG00005006240) #13	RAG1 (ENSBIXG00005016289) #14	TRAF6 (ENSBIXG00005016273) #15	PRR5L (ENSBIXG00005002585) #16	ENSBIXG00005016155 #17	LDLRAD3 (ENSBIXG00005007025) #18	ENSBIXG00005016028	TRIM44 (ENSBIXG00005016001) #19	FJX1 (ENSBIXG00005015936) #20	PAMR1 (ENSBIXG00005002511) #21	SLC1A2 (ENSBIXG00005015820) #22	CD44 (ENSBIXG00005015299) #23	PDHX (ENSBIXG00005002203) #24	APIP (ENSBIXG00005014975) #25	EHF (ENSBIXG00005002187) #26	ELF5 (ENSBIXG00005007013) #27	CAT (ENSBIXG00005005408) #28	ABTB2 (ENSBIXG00005014726) #29	NAT10 (ENSBIXG00005014676) #30	CAPRIN1 (ENSBIXG00005014616) #31	LMO2 (ENSBIXG00005014567) #32	FBXO3 (ENSBIXG00005014542) #33	ENSBIXG00005014479 #34	C11orf91 (ENSBIXG00005014472) #35	KIAA1549L (ENSBIXG00005014441) #36	HIPK3 (ENSBIXG00005001887) #37
Cow	MODERN SPECIES	6	HSD17B12 (ENSBTAG00000000087)	TTC17 (ENSBTAG00000031299) #7	API5 (ENSBTAG00000014474) #8	ENSBTAG00000051591	LRRC4C (ENSBTAG00000007324) #11	IFTAP (ENSBTAG00000021611) #12	RAG2 (ENSBTAG00000031309) #13	RAG1 (ENSBTAG00000040293) #14	TRAF6 (ENSBTAG00000036009) #15	PRR5L (ENSBTAG00000021029) #16	COMMD9 (ENSBTAG00000019045) #17	LDLRAD3 (ENSBTAG00000044158) #18	TRIM44 (ENSBTAG00000037389) #19	FJX1 (ENSBTAG00000047083) #20	PAMR1 (ENSBTAG00000012630) #21	SLC1A2 (ENSBTAG00000012628) #22	CD44 (ENSBTAG00000011578) #23	PDHX (ENSBTAG00000018261) #24	APIP (ENSBTAG00000018257) #25	EHF (ENSBTAG00000017150) #26	ELF5 (ENSBTAG00000012460) #27	CAT (ENSBTAG00000020980) #28	ABTB2 (ENSBTAG00000005923) #29	NAT10 (ENSBTAG00000016747) #30	CAPRIN1 (ENSBTAG00000016744) #31	LMO2 (ENSBTAG00000006951) #32	FBXO3 (ENSBTAG00000010071) #33	CD59 (ENSBTAG00000002302) #34	C15H11orf91 (ENSBTAG00000027577) #35	KIAA1549L (ENSBTAG00000012846) #36	HIPK3 (ENSBTAG00000014884) #37
Bos_a	ANCESTRAL SPECIES	36	ENSGT00390000006196 #7	ENSGT00390000010991 #8	ENSGT00950000185588	ENSGT00940000157405 #11	ENSGT00390000013149 #12	ENSGT00390000012559 #13	ENSGT00390000008679 #14	ENSGT00940000155426.r #15	ENSGT00530000063981.b #16	ENSGT00390000006218 #17	ENSGT00940000160574 #18	ENSGT01100000263481.n.a.b.b.a.b.a.a.a.a.a	ENSGT00440000034605 #19	ENSGT00390000016768 #20	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #23	ENSGT00940000156046 #24	ENSGT00390000001680 #25	ENSGT00940000159310 #26	ENSGT00940000160980 #27	ENSGT00390000018100 #28	ENSGT00940000157661 #29	ENSGT00390000009140 #30	ENSGT00940000153438.a #31	ENSGT00940000160199 #32	ENSGT00940000153571.b #33	ENSGT00390000016309 #34	ENSGT00390000002169 #35	ENSGT00530000063472.b.b.a.b #36	ENSGT00940000155960.b #37
Wild yak	MODERN SPECIES	353							IFTAP (ENSBMUG00000009417) #12	RAG2 (ENSBMUG00000009389) #13	RAG1 (ENSBMUG00000009374) #14	ENSBMUG00000009367 #15	PRR5L (ENSBMUG00000009349) #16	COMMD9 (ENSBMUG00000009313) #17	LDLRAD3 (ENSBMUG00000009294) #18	TRIM44 (ENSBMUG00000009270) #19	PAMR1 (ENSBMUG00000009249) #21	SLC1A2 (ENSBMUG00000009209) #22	CD44 (ENSBMUG00000008990) #23	PDHX (ENSBMUG00000008856) #24	APIP (ENSBMUG00000008830) #25	EHF (ENSBMUG00000008785) #26	ELF5 (ENSBMUG00000008695) #27	CAT (ENSBMUG00000008657) #28	ABTB2 (ENSBMUG00000008640) #29	NAT10 (ENSBMUG00000008507) #30	CAPRIN1 (ENSBMUG00000008415) #31	LMO2 (ENSBMUG00000008395) #32	ENSBMUG00000008388	FBXO3 (ENSBMUG00000008379) #33	ENSBMUG00000008356 #34	C11orf91 (ENSBMUG00000008344) #35	KIAA1549L (ENSBMUG00000008324) #36
Domestic yak	MODERN SPECIES	4	API5 (ENSBGRG00000023877) #8	ENSBGRG00000023797	LRRC4C (ENSBGRG00000023742) #11	IFTAP (ENSBGRG00000023557) #12	RAG2 (ENSBGRG00000023532) #13	RAG1 (ENSBGRG00000023505) #14	ENSBGRG00000023402 #15	PRR5L (ENSBGRG00000023331) #16	COMMD9 (ENSBGRG00000023221) #17	ENSBGRG00000023199	LDLRAD3 (ENSBGRG00000023131) #18	TRIM44 (ENSBGRG00000023024) #19	FJX1 (ENSBGRG00000022999) #20	PAMR1 (ENSBGRG00000022671) #21	ENSBGRG00000022651	SLC1A2 (ENSBGRG00000021839) #22	CD44 (ENSBGRG00000020517) #23	PDHX (ENSBGRG00000020368) #24	APIP (ENSBGRG00000020331) #25	ENSBGRG00000020318	EHF (ENSBGRG00000020179) #26	ENSBGRG00000020151	ELF5 (ENSBGRG00000019841) #27	CAT (ENSBGRG00000019772) #28	ABTB2 (ENSBGRG00000019531) #29	NAT10 (ENSBGRG00000019234) #30	CAPRIN1 (ENSBGRG00000019088) #31	LMO2 (ENSBGRG00000019008) #32	FBXO3 (ENSBGRG00000018736) #33	ENSBGRG00000018697 #34	C11orf91 (ENSBGRG00000018630) #35
American bison	MODERN SPECIES	3375							IFTAP (ENSBBBG00000011500) #12	RAG2 (ENSBBBG00000011509) #13	RAG1 (ENSBBBG00000011514) #14	TRAF6 (ENSBBBG00000011532) #15	PRR5L (ENSBBBG00000011560) #16	COMMD9 (ENSBBBG00000002127) #17	LDLRAD3 (ENSBBBG00000011618) #18	TRIM44 (ENSBBBG00000011629) #19	PAMR1 (ENSBBBG00000011674) #21	SLC1A2 (ENSBBBG00000011827) #22	CD44 (ENSBBBG00000011908) #23	PDHX (ENSBBBG00000008496) #24	APIP (ENSBBBG00000011938) #25	EHF (ENSBBBG00000011971) #26	ELF5 (ENSBBBG00000011994) #27	CAT (ENSBBBG00000002255) #28	ABTB2 (ENSBBBG00000012027) #29	NAT10 (ENSBBBG00000012102) #30	CAPRIN1 (ENSBBBG00000012178) #31	LMO2 (ENSBBBG00000012191) #32	FBXO3 (ENSBBBG00000007069) #33	ENSBBBG00000012235 #34	C11orf91 (ENSBBBG00000012241) #35	KIAA1549L (ENSBBBG00000002311) #36	HIPK3 (ENSBBBG00000012315) #37
Siberian musk deer	MODERN SPECIES	120													TRIM44 (ENSMMSG00000012109) #19	FJX1 (ENSMMSG00000012126) #20	PAMR1 (ENSMMSG00000012138) #21	SLC1A2 (ENSMMSG00000012275) #22	CD44 (ENSMMSG00000012911) #23	PDHX (ENSMMSG00000013182) #24	APIP (ENSMMSG00000013211) #25	EHF (ENSMMSG00000013240) #26	ELF5 (ENSMMSG00000013297) #27	CAT (ENSMMSG00000013424) #28	ABTB2 (ENSMMSG00000013452) #29	NAT10 (ENSMMSG00000013533) #30	CAPRIN1 (ENSMMSG00000013695) #31	LMO2 (ENSMMSG00000013814) #32	FBXO3 (ENSMMSG00000013856) #33	ENSMMSG00000013910 #34	C11orf91 (ENSMMSG00000013918) #35	KIAA1549L (ENSMMSG00000013942) #36	HIPK3 (ENSMMSG00000014072) #37
Yarkand deer	MODERN SPECIES		API5 (ENSCHYG00000000112) #8	ENSCHYG00000000090	LRRC4C (ENSCHYG00000000081) #11	IFTAP (ENSCHYG00000000051) #12	RAG2 (ENSCHYG00000017191) #13	RAG1 (ENSCHYG00000017160) #14	TRAF6 (ENSCHYG00000017116) #15	PRR5L (ENSCHYG00000017023) #16	COMMD9 (ENSCHYG00000016864) #17	LDLRAD3 (ENSCHYG00000016638) #18	ENSCHYG00000016596	TRIM44 (ENSCHYG00000016460) #19	ENSCHYG00000016423	FJX1 (ENSCHYG00000016393) #20	PAMR1 (ENSCHYG00000016185) #21	SLC1A2 (ENSCHYG00000013221) #22	CD44 (ENSCHYG00000012096) #23	PDHX (ENSCHYG00000011875) #24	APIP (ENSCHYG00000011773) #25	EHF (ENSCHYG00000011655) #26	ELF5 (ENSCHYG00000011420) #27	ENSCHYG00000011376	ENSCHYG00000011268 #28	ABTB2 (ENSCHYG00000011077) #29	NAT10 (ENSCHYG00000010483) #30	ENSCHYG00000010227 #31	LMO2 (ENSCHYG00000010101) #32	ENSCHYG00000010048	FBXO3 (ENSCHYG00000009875) #33	ENSCHYG00000009843 #34	C11orf91 (ENSCHYG00000009815) #35
Camelidae	ANCESTRAL SPECIES	25	ENSGT00940000157226	ENSGT00940000154860	ENSGT00390000006196 #7	ENSGT00390000010991 #8	ENSGT00940000157405 #11	ENSGT00390000013149 #12	ENSGT00390000012559 #13	ENSGT00390000008679 #14	ENSGT00940000155426 #15	ENSGT00530000063981.b #16	ENSGT00390000004029.m	ENSGT00390000006218 #17	ENSGT00940000160574 #18	ENSGT00440000034605 #19	ENSGT00940000154234.a #21	ENSGT00940000155379 #22	ENSGT00530000063822.a.a #23	ENSGT00940000156046 #24	ENSGT00390000001680 #25	ENSGT00940000159310 #26	ENSGT00940000160980 #27	ENSGT00390000018100 #28	ENSGT00940000157661 #29	ENSGT00390000009140 #30	ENSGT00940000153438.a #31	ENSGT00940000160199 #32	ENSGT00940000153571.b #33	ENSGT00390000016309 #34	ENSGT00390000002169 #35	ENSGT00530000063472.b.b.a.b #36	ENSGT00940000155960.b #37
Arabian camel	MODERN SPECIES	1	ENSCDRG00005013476	TTC17 (ENSCDRG00005013500) #7	API5 (ENSCDRG00005013676) #8	LRRC4C (ENSCDRG00005014168) #11	ENSCDRG00005014183	IFTAP (ENSCDRG00005014214) #12	RAG2 (ENSCDRG00005014248) #13	RAG1 (ENSCDRG00005014267) #14	TRAF6 (ENSCDRG00005014279) #15	PRR5L (ENSCDRG00005014325) #16	ENSCDRG00005014439	COMMD9 (ENSCDRG00005014454) #17	LDLRAD3 (ENSCDRG00005014562) #18	TRIM44 (ENSCDRG00005014729) #19	PAMR1 (ENSCDRG00005014873) #21	SLC1A2 (ENSCDRG00005015138) #22	CD44 (ENSCDRG00005016811) #23	PDHX (ENSCDRG00005017404) #24	APIP (ENSCDRG00005017467) #25	EHF (ENSCDRG00005017510) #26	ELF5 (ENSCDRG00005017592) #27	CAT (ENSCDRG00005017656) #28	ABTB2 (ENSCDRG00005017710) #29	NAT10 (ENSCDRG00005017893) #30	CAPRIN1 (ENSCDRG00005017986) #31	LMO2 (ENSCDRG00005018050) #32	FBXO3 (ENSCDRG00005018128) #33	C11orf91 (ENSCDRG00005018309) #35	KIAA1549L (ENSCDRG00005018372) #36	HIPK3 (ENSCDRG00005018642) #37	CSTF3 (ENSCDRG00005018752)
Alpaca	MODERN SPECIES	3661																SLC1A2 (ENSVPAG00000001388) #22	CD44 (ENSVPAG00000001386) #23