Euarchontoglires_A	ANCESTRAL SPECIES	5	ENSGT00940000160065 #7	ENSGT00940000155609 #8	ENSGT00950000183092.a #9	ENSGT00940000161040 #10	ENSGT00390000002762.a.a #12	ENSGT00950000182883.b.a.b #13	ENSGT00940000157899.b #14	ENSGT01080000257420.C.b.a #15	ENSGT00390000006330.a.b #16	ENSGT00390000002174.a #17	ENSGT00940000160660 #18	ENSGT00390000000335 #19	ENSGT00940000160722 #20	ENSGT00940000154307.D #21	ENSGT00940000154118.a.a.a.a ##22	ENSGT00940000154118.b #22	ENSGT00940000161764 #23	ENSGT00940000162028	ENSGT00390000011466 #25	ENSGT00440000033468.c.a ##26	ENSGT00940000154256 #27	ENSGT00550000074800 #28	ENSGT00940000159490 #29	ENSGT00940000155250 #30	ENSGT00390000010463.a.a.a #31	ENSGT00940000159780 #32	ENSGT00940000156260 #33	ENSGT00390000015124 #34	ENSGT00500000045104.h #35	ENSGT00500000045104.g #36	ENSGT01050000244905.C #37
Glires	ANCESTRAL SPECIES	4	ENSGT00940000160065 #7	ENSGT00940000155609 #8	ENSGT00950000183092.a #9	ENSGT00940000161040 #10	ENSGT00390000002762.a.a #12	ENSGT00950000182883.b.a.b #13	ENSGT00940000157899.b #14	ENSGT01080000257420.C.b.a #15	ENSGT00390000006330.a.b #16	ENSGT00390000002174.a #17	ENSGT00940000160660 #18	ENSGT00390000000335 #19	ENSGT00940000160722 #20	ENSGT00940000154307.D #21	ENSGT00940000154118.a.a.a.a ##22	ENSGT00940000154118.b #22	ENSGT00940000161764 #23	ENSGT00940000162028	ENSGT00390000011466 #25	ENSGT00440000033468.c.a ##26	ENSGT00940000154256 #27	ENSGT00550000074800 #28	ENSGT00940000159490 #29	ENSGT00940000155250 #30	ENSGT00390000010463.a.a.a #31	ENSGT00940000159780 #32	ENSGT00940000156260 #33	ENSGT00390000015124 #34	ENSGT00500000045104.h #35	ENSGT00500000045104.g #36	ENSGT01050000244905.C #37
Rodentia	ANCESTRAL SPECIES	5	ENSGT00940000160065 #7	ENSGT00940000155609 #8	ENSGT00950000183092.a #9	ENSGT00940000161040 #10	ENSGT00390000002762.a.a #12	ENSGT00950000182883.b.a.b #13	ENSGT00940000157899.b #14	ENSGT01080000257420.C.b.a #15	ENSGT00390000006330.a.b #16	ENSGT00390000002174.a #17	ENSGT00940000160660 #18	ENSGT00390000000335 #19	ENSGT00940000160722 #20	ENSGT00940000154307.D #21	ENSGT00940000154118.a.a.a.a ##22	ENSGT00940000154118.b #22	ENSGT00940000161764 #23	ENSGT00940000162028	ENSGT00390000011466 #25	ENSGT00440000033468.c.a ##26	ENSGT00940000154256 #27	ENSGT00550000074800 #28	ENSGT00940000159490 #29	ENSGT00940000155250 #30	ENSGT00390000010463.a.a.a #31	ENSGT00940000159780 #32	ENSGT00940000156260 #33	ENSGT00390000015124 #34	ENSGT00500000045104.h #35	ENSGT00500000045104.g #36	ENSGT01050000244905.C #37
Rodentia_A	ANCESTRAL SPECIES	4	ENSGT00940000162107	ENSGT00940000160065 #7	ENSGT00940000155609 #8	ENSGT00950000183092.a #9	ENSGT00940000161040 #10	ENSGT00390000002762.a.a #12	ENSGT00950000182883.b.a.b #13	ENSGT00940000157899.b #14	ENSGT01080000257420.C.b.a #15	ENSGT00390000006330.a.b #16	ENSGT00390000002174.a #17	ENSGT00940000160660 #18	ENSGT00390000000335 #19	ENSGT00940000160722 #20	ENSGT00940000154307.D #21	ENSGT00940000154118.b #22	ENSGT00940000161764 #23	ENSGT00940000162028	ENSGT00390000011466 #25	ENSGT00440000033468.c.a ##26	ENSGT00940000154256 #27	ENSGT00550000074800 #28	ENSGT00940000159490 #29	ENSGT00940000155250 #30	ENSGT00390000010463.a.a.a #31	ENSGT00940000159780 #32	ENSGT00940000156260 #33	ENSGT00390000015124 #34	ENSGT00500000045104.h #35	ENSGT00500000045104.g #36	ENSGT01050000244905.C #37
Sciuridae	ANCESTRAL SPECIES	14	ENSGT00940000162107	ENSGT00940000160065 #7	ENSGT00940000155609 #8	ENSGT00950000183092.a #9	ENSGT00940000161040 #10	ENSGT00390000002762.a.a #12	ENSGT00950000182883.b.a.b #13	ENSGT00940000157899.b #14	ENSGT01080000257420.C.b.a #15	ENSGT00390000006330.a.b #16	ENSGT00390000002174.a #17	ENSGT00940000160660 #18	ENSGT00390000000335 #19	ENSGT00940000160722 #20	ENSGT00940000154307.D #21	ENSGT00940000154118.b #22	ENSGT00940000161764 #23	ENSGT00390000011466 #25	ENSGT00440000033468.c.a ##26	ENSGT00940000154256 #27	ENSGT00550000074800 #28	ENSGT00940000159490 #29	ENSGT00940000155250 #30	ENSGT00390000010463.a.a.a #31	ENSGT00940000159780 #32	ENSGT00940000156260 #33	ENSGT00390000015124 #34	ENSGT00500000045104.h #35	ENSGT00500000045104.g #36	ENSGT01050000244905.C #37	ENSGT00390000006482
Marmotini	ANCESTRAL SPECIES	4	ENSGT00940000162107	ENSGT00940000160065 #7	ENSGT00940000155609 #8	ENSGT00950000183092.a #9	ENSGT00940000161040 #10	ENSGT00390000002762.a.a #12	ENSGT00950000182883.b.a.b #13	ENSGT00940000157899.b #14	ENSGT01080000257420.C.b.a #15	ENSGT00390000006330.a.b #16	ENSGT00390000002174.a #17	ENSGT00940000160660 #18	ENSGT00390000000335 #19	ENSGT00940000160722 #20	ENSGT00940000154307.D #21	ENSGT00940000154118.b #22	ENSGT00940000161764 #23	ENSGT00390000011466 #25	ENSGT00440000033468.c.b #26	ENSGT00940000154256 #27	ENSGT00550000074800.ob #28	ENSGT00940000159490 #29	ENSGT00940000155250 #30	ENSGT00390000010463.a.a.a #31	ENSGT00940000159780 #32	ENSGT00940000156260 #33	ENSGT00390000015124 #34	ENSGT00500000045104.h #35	ENSGT00500000045104.g #36	ENSGT01050000244905.C #37	ENSGT00390000006482
Alpin marmot	MODERN SPECIES	11	INHBC (ENSMMMG00000011180) #7	R3HDM2 (ENSMMMG00000011206) #8	STAC3 (ENSMMMG00000012741) #9	NDUFA4L2 (ENSMMMG00000012770) #10	ENSMMMG00000012783 #11	SHMT2 (ENSMMMG00000012788) #12	NXPH4 (ENSMMMG00000012812) #13	LRP1 (ENSMMMG00000012817) #14	STAT6 (ENSMMMG00000012942) #15	NAB2 (ENSMMMG00000012959) #16	NEMP1 (ENSMMMG00000012998) #17	MYO1A (ENSMMMG00000013029) #18	TAC3 (ENSMMMG00000013065) #19	ZBTB39 (ENSMMMG00000013072) #20	GPR182 (ENSMMMG00000013074) #21	RDH16 (ENSMMMG00000013078) #22	SDR9C7 (ENSMMMG00000013089) #23	ENSMMMG00000013092 #24	PRIM1 (ENSMMMG00000013128) #25	ENSMMMG00000013160 #26	PTGES3 (ENSMMMG00000013173) #27	ATP5F1B (ENSMMMG00000013206) #28	BAZ2A (ENSMMMG00000013218) #29	RBMS2 (ENSMMMG00000013350) #30	GLS2 (ENSMMMG00000013386) #31	SPRYD4 (ENSMMMG00000013401) #32	MIP (ENSMMMG00000013405) #33	TIMELESS (ENSMMMG00000013421) #34	ENSMMMG00000013511 #35	APOF (ENSMMMG00000013515) #36	STAT2 (ENSMMMG00000013531) #37
Marmotini_b	ANCESTRAL SPECIES	3	ENSGT00940000160235	ENSGT00940000162107	ENSGT00940000160065 #7	ENSGT00940000155609 #8	ENSGT00950000183092.a #9	ENSGT00390000002762.a.a #12	ENSGT00950000182883.b.a.b #13	ENSGT00940000157899.b #14	ENSGT01080000257420.C.b.a #15	ENSGT00390000006330.a.b #16	ENSGT00390000002174.a #17	ENSGT00940000160660 #18	ENSGT00390000000335 #19	ENSGT00940000160722 #20	ENSGT00940000154307.D #21	ENSGT00940000154118.b #22	ENSGT00940000161764 #23	ENSGT00390000011466 #25	ENSGT00440000033468.c.a ##26	ENSGT00940000154256 #27	ENSGT00550000074800.ob #28	ENSGT00940000159490 #29	ENSGT00940000155250 #30	ENSGT00390000010463.a.a.a #31	ENSGT00940000159780 #32	ENSGT00940000156260 #33	ENSGT00390000015124 #34	ENSGT00500000045104.h #35	ENSGT00500000045104.g #36	ENSGT01050000244905.C #37	ENSGT00390000006482
Arctic ground squirrel	MODERN SPECIES	197	ARHGAP9 (ENSUPAG00010017207)	INHBE (ENSUPAG00010017202)	INHBC (ENSUPAG00010017199) #7	R3HDM2 (ENSUPAG00010016815) #8	STAC3 (ENSUPAG00010016748) #9	SHMT2 (ENSUPAG00010016720) #12	NXPH4 (ENSUPAG00010016712) #13	LRP1 (ENSUPAG00010016565) #14	STAT6 (ENSUPAG00010016543) #15	NAB2 (ENSUPAG00010016528) #16	NEMP1 (ENSUPAG00010016506) #17	MYO1A (ENSUPAG00010016464) #18	TAC3 (ENSUPAG00010016446) #19	ZBTB39 (ENSUPAG00010016442) #20	GPR182 (ENSUPAG00010016435) #21	RDH16 (ENSUPAG00010016427) #22	SDR9C7 (ENSUPAG00010016416) #23	PRIM1 (ENSUPAG00010016373) #25	ENSUPAG00010016347 #26	PTGES3 (ENSUPAG00010016328) #27	ATP5F1B (ENSUPAG00010016293) #28	BAZ2A (ENSUPAG00010016135) #29	RBMS2 (ENSUPAG00010016103) #30	GLS2 (ENSUPAG00010016072) #31	SPRYD4 (ENSUPAG00010016065) #32	MIP (ENSUPAG00010016061) #33	TIMELESS (ENSUPAG00010015979) #34	ENSUPAG00010015975 #35	APOF (ENSUPAG00010015964) #36	STAT2 (ENSUPAG00010015949) #37	IL23A (ENSUPAG00010015944)
Squirrel	MODERN SPECIES	246	GLI1 (ENSSTOG00000020366)	INHBE (ENSSTOG00000025066)	INHBC (ENSSTOG00000001097) #7	ENSSTOG00000013424 #8	STAC3 (ENSSTOG00000013409) #9	SHMT2 (ENSSTOG00000013388) #12	NXPH4 (ENSSTOG00000024980) #13	LRP1 (ENSSTOG00000013305) #14	STAT6 (ENSSTOG00000013280) #15	NAB2 (ENSSTOG00000020459) #16	NEMP1 (ENSSTOG00000012331) #17	MYO1A (ENSSTOG00000012304) #18	TAC3 (ENSSTOG00000012292) #19	ZBTB39 (ENSSTOG00000012284) #20	GPR182 (ENSSTOG00000020264) #21	RDH16 (ENSSTOG00000021331) #22	SDR9C7 (ENSSTOG00000026458) #23	PRIM1 (ENSSTOG00000009049) #25	ENSSTOG00000009028 ##26	ENSSTOG00000030668 #27	ENSSTOG00000013882 #28	BAZ2A (ENSSTOG00000013452) #29	RBMS2 (ENSSTOG00000013442) #30	GLS2 (ENSSTOG00000020896) #31	SPRYD4 (ENSSTOG00000024949) #32	MIP (ENSSTOG00000002295) #33	TIMELESS (ENSSTOG00000014170) #34	STAT2 (ENSSTOG00000015985) #37	IL23A (ENSSTOG00000015981)	PAN2 (ENSSTOG00000015974)	CNPY2 (ENSSTOG00000015971)
Eurasian red squirrel	MODERN SPECIES	14	INHBE (ENSSVLG00005011485)	INHBC (ENSSVLG00005011429) #7	R3HDM2 (ENSSVLG00005011028) #8	STAC3 (ENSSVLG00005010688) #9	NDUFA4L2 (ENSSVLG00005010637) #10	SHMT2 (ENSSVLG00005010562) #12	NXPH4 (ENSSVLG00005010530) #13	LRP1 (ENSSVLG00005009995) #14	STAT6 (ENSSVLG00005009880) #15	NAB2 (ENSSVLG00005009807) #16	NEMP1 (ENSSVLG00005009668) #17	MYO1A (ENSSVLG00005009487) #18	TAC3 (ENSSVLG00005009429) #19	ZBTB39 (ENSSVLG00005009416) #20	GPR182 (ENSSVLG00005009407) #21	RDH16 (ENSSVLG00005009375) #22	ENSSVLG00005009344 #23	ENSSVLG00005009281 #23	ENSSVLG00005009263	ENSSVLG00005009223	ENSSVLG00005009208	ENSSVLG00005009127 #25	ENSSVLG00005009065 ##26	PTGES3 (ENSSVLG00005008976) #27	ATP5F1B (ENSSVLG00005008891) #28	BAZ2A (ENSSVLG00005008631) #29	RBMS2 (ENSSVLG00005008523) #30	GLS2 (ENSSVLG00005008285) #31	ENSSVLG00005008222 #32	MIP (ENSSVLG00005008182) #33	TIMELESS (ENSSVLG00005007872) #34
Hystricomorpha	ANCESTRAL SPECIES	9	ENSGT00940000162107	ENSGT00940000160065 #7	ENSGT00940000155609 #8	ENSGT00950000183092.a #9	ENSGT00940000161040 #10	ENSGT00390000002762.a.a #12	ENSGT00950000182883.b.a.b #13	ENSGT00940000157899.b #14	ENSGT01080000257420.C.b.a #15	ENSGT00390000006330.a.b #16	ENSGT00390000002174.a #17	ENSGT00940000160660 #18	ENSGT00390000000335 #19	ENSGT00940000160722 #20	ENSGT00940000154307.D #21	ENSGT00940000154118.b #22	ENSGT00940000161764 #23	ENSGT00940000162028	ENSGT00390000011466 #25	ENSGT00440000033468.c.a ##26	ENSGT00940000154256 #27	ENSGT00550000074800 #28	ENSGT00940000159490 #29	ENSGT00940000155250 #30	ENSGT00390000010463.a.a.a #31	ENSGT00940000159780 #32	ENSGT00940000156260 #33	ENSGT00390000015124 #34	ENSGT00500000045104.g #36	ENSGT01050000244905.C #37	ENSGT00390000006482
Hystricomorpha_a	ANCESTRAL SPECIES	7	ENSGT00940000162107	ENSGT00940000160065 #7	ENSGT00940000155609 #8	ENSGT00950000183092.a #9	ENSGT00940000161040 #10	ENSGT00390000002762.a.a #12	ENSGT00950000182883.b.a.b #13	ENSGT00940000157899.b #14	ENSGT01080000257420.C.b.a #15	ENSGT00390000006330.a.b #16	ENSGT00390000002174.a #17	ENSGT00940000160660 #18	ENSGT00390000000335 #19	ENSGT00940000160722 #20	ENSGT00940000154307.D #21	ENSGT00940000154118.b #22	ENSGT00940000161764 #23	ENSGT00940000162028	ENSGT00390000011466 #25	ENSGT00440000033468.c.a ##26	ENSGT00940000154256 #27	ENSGT00550000074800 #28	ENSGT00940000159490 #29	ENSGT00940000155250 #30	ENSGT00390000010463.a.a.a #31	ENSGT00940000159780 #32	ENSGT00940000156260 #33	ENSGT00390000015124 #34	ENSGT00500000045104.g #36	ENSGT01050000244905.C #37	ENSGT00390000006482
Guinea pig	MODERN SPECIES	9	GLI1 (ENSCPOG00000005414)	INHBE (ENSCPOG00000031115)	INHBC (ENSCPOG00000033593) #7	R3HDM2 (ENSCPOG00000009217) #8	STAC3 (ENSCPOG00000006200) #9	NDUFA4L2 (ENSCPOG00000035802) #10	SHMT2 (ENSCPOG00000012840) #12	LRP1 (ENSCPOG00000031730) #14	STAT6 (ENSCPOG00000012941) #15	NAB2 (ENSCPOG00000012940) #16	NEMP1 (ENSCPOG00000034078) #17	MYO1A (ENSCPOG00000012927) #18	TAC3 (ENSCPOG00000012924) #19	ZBTB39 (ENSCPOG00000035858) #20	GPR182 (ENSCPOG00000022599) #21	RDH16 (ENSCPOG00000002833) #22	SDR9C7 (ENSCPOG00000040671) #23	ENSCPOG00000002890	ENSCPOG00000006822	PRIM1 (ENSCPOG00000024424) #25	ENSCPOG00000012654 ##26	PTGES3 (ENSCPOG00000000057) #27	ATP5F1B (ENSCPOG00000023092) #28	BAZ2A (ENSCPOG00000006404) #29	RBMS2 (ENSCPOG00000008256) #30	GLS2 (ENSCPOG00000002352) #31	SPRYD4 (ENSCPOG00000002349) #32	MIP (ENSCPOG00000002347) #33	TIMELESS (ENSCPOG00000002338) #34	APOF (ENSCPOG00000014939) #36	STAT2 (ENSCPOG00000014930) #37
Hystricomorpha_b	ANCESTRAL SPECIES	13	ENSGT00940000162107	ENSGT00940000160065 #7	ENSGT00940000155609 #8	ENSGT00950000183092.a #9	ENSGT00940000161040 #10	ENSGT00390000002762.a.a #12	ENSGT00950000182883.b.a.b #13	ENSGT00940000157899.b #14	ENSGT01080000257420.C.b.a #15	ENSGT00390000006330.a.b #16	ENSGT00390000002174.a #17	ENSGT00940000160660 #18	ENSGT00390000000335 #19	ENSGT00940000160722 #20	ENSGT00940000154307.D #21	ENSGT00940000154118.b #22	ENSGT00940000161764 #23	ENSGT00940000162028	ENSGT00390000011466 #25	ENSGT00440000033468.c.a ##26	ENSGT00940000154256.jb #27	ENSGT00550000074800 #28	ENSGT00940000159490 #29	ENSGT00940000155250 #30	ENSGT00390000010463.a.a.a #31	ENSGT00940000159780 #32	ENSGT00940000156260 #33	ENSGT00390000015124 #34	ENSGT00500000045104.g #36	ENSGT01050000244905.C #37	ENSGT00390000006482
Long-tailed chinchilla	DUPLICATION
Long-tailed chinchilla	DUPLICATION
Long-tailed chinchilla	DUPLICATION
Long-tailed chinchilla	MODERN SPECIES	165	NDUFA4L2 (ENSCLAG00000017351) #10	SHMT2 (ENSCLAG00000014378) #12	NXPH4 (ENSCLAG00000016280) #13	LRP1 (ENSCLAG00000011741) #14	STAT6 (ENSCLAG00000011587) #15	NAB2 (ENSCLAG00000009310) #16	NEMP1 (ENSCLAG00000011169) #17	MYO1A (ENSCLAG00000009254) #18	TAC3 (ENSCLAG00000014146) #19	ZBTB39 (ENSCLAG00000012800) #20	GPR182 (ENSCLAG00000012163) #21	ENSCLAG00000009985 #22	ENSCLAG00000012992	ENSCLAG00000011030 #22	ENSCLAG00000013334 #22	ENSCLAG00000012956 #22	SDR9C7 (ENSCLAG00000009483) #23	ENSCLAG00000013306	PRIM1 (ENSCLAG00000010248) #25	Naca (ENSCLAG00000013441) ##26	ENSCLAG00000013717 #27	ATP5F1B (ENSCLAG00000011615) #28	BAZ2A (ENSCLAG00000010711) #29	RBMS2 (ENSCLAG00000012661) #30	SPRYD4 (ENSCLAG00000013017) #32	GLS2 (ENSCLAG00000009741) #31	MIP (ENSCLAG00000009467) #33	TIMELESS (ENSCLAG00000012850) #34	APOF (ENSCLAG00000017022) #36	STAT2 (ENSCLAG00000012105) #37	IL23A (ENSCLAG00000011380)
Long-tailed chinchilla	MODERN SPECIES	165	STAC3 (ENSCLAG00000017371) #9	NDUFA4L2 (ENSCLAG00000017351) #10	SHMT2 (ENSCLAG00000014378) #12	NXPH4 (ENSCLAG00000016280) #13	LRP1 (ENSCLAG00000011741) #14	STAT6 (ENSCLAG00000011587) #15	NAB2 (ENSCLAG00000009310) #16	NEMP1 (ENSCLAG00000011169) #17	MYO1A (ENSCLAG00000009254) #18	TAC3 (ENSCLAG00000014146) #19	ZBTB39 (ENSCLAG00000012800) #20	GPR182 (ENSCLAG00000012163) #21	ENSCLAG00000009985 #22	ENSCLAG00000012992	ENSCLAG00000011030 #22	ENSCLAG00000013334 #22	ENSCLAG00000012956 #22	SDR9C7 (ENSCLAG00000009483) #23	ENSCLAG00000013306	PRIM1 (ENSCLAG00000010248) #25	Naca (ENSCLAG00000013441) ##26	ENSCLAG00000013717 #27	ATP5F1B (ENSCLAG00000011615) #28	BAZ2A (ENSCLAG00000010711) #29	RBMS2 (ENSCLAG00000012661) #30	SPRYD4 (ENSCLAG00000013017) #32	GLS2 (ENSCLAG00000009741) #31	MIP (ENSCLAG00000009467) #33	TIMELESS (ENSCLAG00000012850) #34	APOF (ENSCLAG00000017022) #36	STAT2 (ENSCLAG00000012105) #37
Long-tailed chinchilla	MODERN SPECIES	165	INHBE (ENSCLAG00000013199)	INHBC (ENSCLAG00000015051) #7	R3HDM2 (ENSCLAG00000011997) #8	STAC3 (ENSCLAG00000017371) #9	NDUFA4L2 (ENSCLAG00000017351) #10	SHMT2 (ENSCLAG00000014378) #12	NXPH4 (ENSCLAG00000016280) #13	LRP1 (ENSCLAG00000011741) #14	STAT6 (ENSCLAG00000011587) #15	NAB2 (ENSCLAG00000009310) #16	NEMP1 (ENSCLAG00000011169) #17	MYO1A (ENSCLAG00000009254) #18	TAC3 (ENSCLAG00000014146) #19	ZBTB39 (ENSCLAG00000012800) #20	GPR182 (ENSCLAG00000012163) #21	ENSCLAG00000009985 #22	ENSCLAG00000012992	ENSCLAG00000011030 #22	ENSCLAG00000013334 #22	ENSCLAG00000012956 #22	SDR9C7 (ENSCLAG00000009483) #23	ENSCLAG00000013306	PRIM1 (ENSCLAG00000010248) #25	Naca (ENSCLAG00000013441) ##26	ENSCLAG00000013717 #27	ATP5F1B (ENSCLAG00000011615) #28	BAZ2A (ENSCLAG00000010711) #29	RBMS2 (ENSCLAG00000012661) #30	SPRYD4 (ENSCLAG00000013017) #32	GLS2 (ENSCLAG00000009741) #31	MIP (ENSCLAG00000009467) #33
Long-tailed chinchilla	MODERN SPECIES	165	R3HDM2 (ENSCLAG00000011997) #8	STAC3 (ENSCLAG00000017371) #9	NDUFA4L2 (ENSCLAG00000017351) #10	SHMT2 (ENSCLAG00000014378) #12	NXPH4 (ENSCLAG00000016280) #13	LRP1 (ENSCLAG00000011741) #14	STAT6 (ENSCLAG00000011587) #15	NAB2 (ENSCLAG00000009310) #16	NEMP1 (ENSCLAG00000011169) #17	MYO1A (ENSCLAG00000009254) #18	TAC3 (ENSCLAG00000014146) #19	ZBTB39 (ENSCLAG00000012800) #20	GPR182 (ENSCLAG00000012163) #21	ENSCLAG00000009985 #22	ENSCLAG00000012992	ENSCLAG00000011030 #22	ENSCLAG00000013334 #22	ENSCLAG00000012956 #22	SDR9C7 (ENSCLAG00000009483) #23	ENSCLAG00000013306	PRIM1 (ENSCLAG00000010248) #25	Naca (ENSCLAG00000013441) ##26	ENSCLAG00000013717 #27	ATP5F1B (ENSCLAG00000011615) #28	BAZ2A (ENSCLAG00000010711) #29	RBMS2 (ENSCLAG00000012661) #30	SPRYD4 (ENSCLAG00000013017) #32	GLS2 (ENSCLAG00000009741) #31	MIP (ENSCLAG00000009467) #33	TIMELESS (ENSCLAG00000012850) #34	APOF (ENSCLAG00000017022) #36
Degu	DUPLICATION
Degu	MODERN SPECIES	327	ENSODEG00000001478	STAC3 (ENSODEG00000001424) #9	NDUFA4L2 (ENSODEG00000002560) #10	ENSODEG00000002538 #12	NXPH4 (ENSODEG00000002515) #13	LRP1 (ENSODEG00000002173) #14	STAT6 (ENSODEG00000001929) #15	NAB2 (ENSODEG00000001905) #16	NEMP1 (ENSODEG00000001860) #17	ENSODEG00000018785	MYO1A (ENSODEG00000001774) #18	TAC3 (ENSODEG00000001740) #19	GPR182 (ENSODEG00000001727) #21	ENSODEG00000001707 #22	ENSODEG00000001681	ENSODEG00000001656 #22	ENSODEG00000001645 #23	ENSODEG00000001623 #23	ENSODEG00000001610	ENSODEG00000001597	ENSODEG00000001581
Degu	MODERN SPECIES	327	ENSODEG00000001512	ENSODEG00000001494 #8	ENSODEG00000001478	STAC3 (ENSODEG00000001424) #9	NDUFA4L2 (ENSODEG00000002560) #10	ENSODEG00000002538 #12	NXPH4 (ENSODEG00000002515) #13	LRP1 (ENSODEG00000002173) #14	STAT6 (ENSODEG00000001929) #15	NAB2 (ENSODEG00000001905) #16	NEMP1 (ENSODEG00000001860) #17	ENSODEG00000018785	MYO1A (ENSODEG00000001774) #18	TAC3 (ENSODEG00000001740) #19	GPR182 (ENSODEG00000001727) #21	ENSODEG00000001707 #22	ENSODEG00000001681	ENSODEG00000001656 #22	ENSODEG00000001645 #23	ENSODEG00000001623 #23	ENSODEG00000001610	ENSODEG00000001597	ENSODEG00000001581
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	8	MARS1 (ENSHGLG00000013493)	INHBE (ENSHGLG00000032463)	ENSHGLG00000042046	NDUFA4L2 (ENSHGLG00000045559) #10	ENSHGLG00000050142 #12	ENSHGLG00000039328 #13	ENSHGLG00000043481	ENSHGLG00000050903	STAT6 (ENSHGLG00000018890) #15	NAB2 (ENSHGLG00000046085) #16	TMEM194A (ENSHGLG00000050319) #17	MYO1A (ENSHGLG00000016942) #18	TAC3 (ENSHGLG00000045829) #19	ZBTB39 (ENSHGLG00000040796) #20	ENSHGLG00000017107 #22	ENSHGLG00000015298 #22	SDR9C7 (ENSHGLG00000015339) #23	ENSHGLG00000041982	HSD17B6 (ENSHGLG00000016546)	ENSHGLG00000045594	ENSHGLG00000049699	PRIM1 (ENSHGLG00000034649) #25	ENSHGLG00000006553 #26	PTGES3 (ENSHGLG00000033363) #27	ATP5F1B (ENSHGLG00000006040) #28	ENSHGLG00000032509 #29	RBMS2 (ENSHGLG00000018238) #30	GLS2 (ENSHGLG00000013406) #31	SPRYD4 (ENSHGLG00000016750) #32	MIP (ENSHGLG00000016789) #33	TIMELESS (ENSHGLG00000016404) #34
Naked mole-rat female	MODERN SPECIES	8	ENSHGLG00000041807	MARS1 (ENSHGLG00000013493)	INHBE (ENSHGLG00000032463)	ENSHGLG00000042046	NDUFA4L2 (ENSHGLG00000045559) #10	ENSHGLG00000050142 #12	ENSHGLG00000039328 #13	ENSHGLG00000043481	ENSHGLG00000050903	STAT6 (ENSHGLG00000018890) #15	NAB2 (ENSHGLG00000046085) #16	TMEM194A (ENSHGLG00000050319) #17	MYO1A (ENSHGLG00000016942) #18	TAC3 (ENSHGLG00000045829) #19	ZBTB39 (ENSHGLG00000040796) #20	ENSHGLG00000017107 #22	ENSHGLG00000015298 #22	SDR9C7 (ENSHGLG00000015339) #23	ENSHGLG00000041982	HSD17B6 (ENSHGLG00000016546)	ENSHGLG00000045594	ENSHGLG00000049699	PRIM1 (ENSHGLG00000034649) #25	ENSHGLG00000006553 #26	PTGES3 (ENSHGLG00000033363) #27	ATP5F1B (ENSHGLG00000006040) #28	ENSHGLG00000032509 #29	RBMS2 (ENSHGLG00000018238) #30	GLS2 (ENSHGLG00000013406) #31	SPRYD4 (ENSHGLG00000016750) #32	MIP (ENSHGLG00000016789) #33
Rodentia_B	ANCESTRAL SPECIES	3	ENSGT00940000160065 #7	ENSGT00940000155609 #8	ENSGT00950000183092.a #9	ENSGT00940000161040 #10	ENSGT00390000002762.a.a #12	ENSGT00950000182883.b.a.b #13	ENSGT00940000157899.b #14	ENSGT01080000257420.C.b.a #15	ENSGT00390000006330.a.b #16	ENSGT00390000002174.a #17	ENSGT00940000160660 #18	ENSGT00390000000335 #19	ENSGT00940000160722 #20	ENSGT00940000154307.D #21	ENSGT00940000154118.a.a.a.a ##22	ENSGT00940000154118.b #22	ENSGT00940000161764 #23	ENSGT00940000162028	ENSGT00390000011466 #25	ENSGT00440000033468.c.a ##26	ENSGT00940000154256 #27	ENSGT00550000074800 #28	ENSGT00940000159490 #29	ENSGT00940000155250 #30	ENSGT00390000010463.a.a.a #31	ENSGT00940000159780 #32	ENSGT00940000156260 #33	ENSGT00390000015124 #34	ENSGT00500000045104.h #35	ENSGT00500000045104.g #36	ENSGT01050000244905.C #37
Myomorpha	ANCESTRAL SPECIES	2	ENSGT00940000160065 #7	ENSGT00940000155609 #8	ENSGT00950000183092.a #9	ENSGT00940000161040 #10	ENSGT00390000002762.a.a #12	ENSGT00950000182883.b.a.b #13	ENSGT00940000157899.b #14	ENSGT01080000257420.C.b.a #15	ENSGT00390000006330.a.b #16	ENSGT00390000002174.a #17	ENSGT00940000160660 #18	ENSGT00390000000335 #19	ENSGT00940000160722 #20	ENSGT00940000154307.D #21	ENSGT00940000154118.a.a.a.a ##22	ENSGT00940000154118.b #22	ENSGT00940000161764 #23	ENSGT00940000162028	ENSGT00390000011466 #25	ENSGT00440000033468.c.a ##26	ENSGT00940000154256 #27	ENSGT00550000074800 #28	ENSGT00940000159490 #29	ENSGT00940000155250 #30	ENSGT00390000010463.a.a.a #31	ENSGT00940000159780 #32	ENSGT00940000156260 #33	ENSGT00390000015124 #34	ENSGT00500000045104.h #35	ENSGT00500000045104.g #36	ENSGT01050000244905.C #37
Muroidea	ANCESTRAL SPECIES	5	ENSGT00940000160065 #7	ENSGT00940000155609 #8	ENSGT00950000183092.a #9	ENSGT00940000161040 #10	ENSGT00390000002762.a.a #12	ENSGT00950000182883.b.a.b #13	ENSGT00940000157899.b #14	ENSGT01080000257420.C.b.a #15	ENSGT00390000006330.a.b #16	ENSGT00390000002174.a #17	ENSGT00940000160660 #18	ENSGT00390000000335 #19	ENSGT00940000160722 #20	ENSGT00940000154307.D #21	ENSGT00940000154118.a.a.a.a ##22	ENSGT00940000154118.b #22	ENSGT00940000161764 #23	ENSGT00940000162028	ENSGT00390000011466 #25	ENSGT00440000033468.c.a ##26	ENSGT00940000154256 #27	ENSGT00550000074800 #28	ENSGT00940000159490 #29	ENSGT00940000155250 #30	ENSGT00390000010463.a.a.a #31	ENSGT00940000159780 #32	ENSGT00940000156260 #33	ENSGT00390000015124 #34	ENSGT00500000045104.h #35	ENSGT00500000045104.g #36	ENSGT01050000244905.C #37
Muroidea_A	ANCESTRAL SPECIES	22	ENSGT00940000160065 #7	ENSGT00940000155609 #8	ENSGT00950000183092.a #9	ENSGT00940000161040 #10	ENSGT00390000002762.a.a #12	ENSGT00950000182883.b.a.b #13	ENSGT00940000157899.b #14	ENSGT01080000257420.C.b.a #15	ENSGT00390000006330.a.b #16	ENSGT00390000002174.a #17	ENSGT00940000160660 #18	ENSGT00390000000335 #19	ENSGT00940000160722 #20	ENSGT00940000154307.D #21	ENSGT00940000154118.a.a.a.a ##22	ENSGT00940000154118.b #22	ENSGT00940000161764 #23	ENSGT00940000162028	ENSGT00390000011466 #25	ENSGT00440000033468.c.a ##26	ENSGT00940000154256 #27	ENSGT00550000074800 #28	ENSGT00940000159490 #29	ENSGT00940000155250 #30	ENSGT00390000010463.a.a.a #31	ENSGT00940000159780 #32	ENSGT00940000156260 #33	ENSGT00390000015124 #34	ENSGT00500000045104.h #35	ENSGT00500000045104.g #36	ENSGT01050000244905.C #37
Cricetidae	ANCESTRAL SPECIES	21	ENSGT00940000162107	ENSGT00940000160065 #7	ENSGT00940000155609 #8	ENSGT00950000183092.a #9	ENSGT00940000161040 #10	ENSGT00390000002762.a.a #12	ENSGT00950000182883.b.a.b #13	ENSGT00940000157899.b #14	ENSGT01080000257420.C.b.a #15	ENSGT00390000006330.a.b #16	ENSGT00390000002174.a #17	ENSGT00940000160660 #18	ENSGT00390000000335 #19	ENSGT00940000160722 #20	ENSGT00940000154307.D #21	ENSGT00940000154118.b #22	ENSGT00940000161764 #23	ENSGT00940000162028	ENSGT00390000011466 #25	ENSGT00440000033468.c.b #26	ENSGT00940000154256 #27	ENSGT00550000074800 #28	ENSGT00940000159490 #29	ENSGT00940000155250 #30	ENSGT00390000010463.a.a.a #31	ENSGT00940000159780 #32	ENSGT00940000156260 #33	ENSGT00390000015124 #34	ENSGT00500000045104.h #35	ENSGT00500000045104.g #36	ENSGT01050000244905.C #37
Cricetinae	DUPLICATION
Cricetinae	ANCESTRAL SPECIES	22	ENSGT00940000162107	ENSGT00940000160065 #7	ENSGT00940000155609 #8	ENSGT00950000183092.a #9	ENSGT00940000161040 #10	ENSGT00390000002762.a.a #12	ENSGT00950000182883.b.a.b #13	ENSGT00940000157899.b #14	ENSGT01080000257420.C.b.a #15	ENSGT00390000006330.a.b #16	ENSGT00390000002174.a #17	ENSGT00940000160660 #18	ENSGT00390000000335 #19	ENSGT00940000160722 #20	ENSGT00940000154307.D #21	ENSGT00940000154118.b.q #22	ENSGT00940000154118.b.r #22	ENSGT00940000161764 #23	ENSGT00940000162028	ENSGT00390000011466 #25	ENSGT00440000033468.c.b #26	ENSGT00940000154256 #27	ENSGT00550000074800 #28	ENSGT00940000159490 #29	ENSGT00940000155250 #30	ENSGT00390000010463.a.a.a #31	ENSGT00940000159780 #32	ENSGT00940000156260 #33	ENSGT00390000015124 #34	ENSGT00500000045104.h #35	ENSGT00500000045104.g #36
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	352	Inhbc (ENSCGRG00001017014) #7	R3hdm2 (ENSCGRG00001017324) #8	Stac3 (ENSCGRG00001021668) #9	Ndufa4l2 (ENSCGRG00001021531) #10	Shmt2 (ENSCGRG00001018472) #12	Nxph4 (ENSCGRG00001014648) #13	Lrp1 (ENSCGRG00001011627) #14	ENSCGRG00001002945	Stat6 (ENSCGRG00001020526) #15	Nab2 (ENSCGRG00001018114) #16	Nemp1 (ENSCGRG00001014268) #17	Myo1a (ENSCGRG00001005373) #18	Tac2 (ENSCGRG00001014061) #19	Zbtb39 (ENSCGRG00001001407) #20	Gpr182 (ENSCGRG00001011877) #21	ENSCGRG00001016912 #22	ENSCGRG00001003209 #22	ENSCGRG00001023626 #22	Sdr9c7 (ENSCGRG00001014788) #23	Hsd17b6 (ENSCGRG00001003931)	Prim1 (ENSCGRG00001022266) #25	ENSCGRG00001019512 #26	Ptges3 (ENSCGRG00001015638) #27	Atp5b (ENSCGRG00001017195) #28	Baz2a (ENSCGRG00001005683) #29	Rbms2 (ENSCGRG00001023923) #30	Gls2 (ENSCGRG00001012770) #31	Spryd4 (ENSCGRG00001016587) #32	Mip (ENSCGRG00001020147) #33	Timeless (ENSCGRG00001012271) #34	ENSCGRG00001001978 #35
Chinese hamster chok1gshd	MODERN SPECIES	352	R3hdm2 (ENSCGRG00001017324) #8	Stac3 (ENSCGRG00001021668) #9	Ndufa4l2 (ENSCGRG00001021531) #10	Shmt2 (ENSCGRG00001018472) #12	Nxph4 (ENSCGRG00001014648) #13	Lrp1 (ENSCGRG00001011627) #14	ENSCGRG00001002945	Stat6 (ENSCGRG00001020526) #15	Nab2 (ENSCGRG00001018114) #16	Nemp1 (ENSCGRG00001014268) #17	Myo1a (ENSCGRG00001005373) #18	Tac2 (ENSCGRG00001014061) #19	Zbtb39 (ENSCGRG00001001407) #20	Gpr182 (ENSCGRG00001011877) #21	ENSCGRG00001016912 #22	ENSCGRG00001003209 #22	ENSCGRG00001023626 #22	Sdr9c7 (ENSCGRG00001014788) #23	Hsd17b6 (ENSCGRG00001003931)	Prim1 (ENSCGRG00001022266) #25	ENSCGRG00001019512 #26	Ptges3 (ENSCGRG00001015638) #27	Atp5b (ENSCGRG00001017195) #28	Baz2a (ENSCGRG00001005683) #29	Rbms2 (ENSCGRG00001023923) #30	Gls2 (ENSCGRG00001012770) #31	Spryd4 (ENSCGRG00001016587) #32	Mip (ENSCGRG00001020147) #33	Timeless (ENSCGRG00001012271) #34	ENSCGRG00001001978 #35	Apof (ENSCGRG00001021570) #36
Cricetinae	ANCESTRAL SPECIES	22	ENSGT01050000244905.C #37	ENSGT00500000045104.g #36	ENSGT00500000045104.h #35	ENSGT00390000015124 #34	ENSGT00940000156260 #33	ENSGT00940000159780 #32	ENSGT00390000010463.a.a.a #31	ENSGT00940000155250 #30	ENSGT00940000159490 #29	ENSGT00550000074800 #28	ENSGT00940000154256 #27	ENSGT00440000033468.c.b #26	ENSGT00390000011466 #25	ENSGT00940000162028	ENSGT00940000161764 #23	ENSGT00940000154118.b.r #22	ENSGT00940000154118.b.q #22	ENSGT00940000154307.D #21	ENSGT00940000160722 #20	ENSGT00390000000335 #19	ENSGT00940000160660 #18	ENSGT00390000002174.a #17	ENSGT00390000006330.a.b #16	ENSGT01080000257420.C.b.a #15	ENSGT00940000157899.b #14	ENSGT00950000182883.b.a.b #13	ENSGT00390000002762.a.a #12	ENSGT00940000161040 #10	ENSGT00950000183092.a #9	ENSGT00940000155609 #8	ENSGT00940000160065 #7
Chinese hamster chok1gshd	MODERN SPECIES	352	Stat2 (ENSCGRG00001011774) #37	Apof (ENSCGRG00001021570) #36	ENSCGRG00001001978 #35	Timeless (ENSCGRG00001012271) #34	Mip (ENSCGRG00001020147) #33	Spryd4 (ENSCGRG00001016587) #32	Gls2 (ENSCGRG00001012770) #31	Rbms2 (ENSCGRG00001023923) #30	Baz2a (ENSCGRG00001005683) #29	Atp5b (ENSCGRG00001017195) #28	Ptges3 (ENSCGRG00001015638) #27	ENSCGRG00001019512 #26	Prim1 (ENSCGRG00001022266) #25	Hsd17b6 (ENSCGRG00001003931)	Sdr9c7 (ENSCGRG00001014788) #23	ENSCGRG00001023626 #22	ENSCGRG00001003209 #22	ENSCGRG00001016912 #22	Gpr182 (ENSCGRG00001011877) #21	Zbtb39 (ENSCGRG00001001407) #20	Tac2 (ENSCGRG00001014061) #19	Myo1a (ENSCGRG00001005373) #18	Nemp1 (ENSCGRG00001014268) #17	Nab2 (ENSCGRG00001018114) #16	Stat6 (ENSCGRG00001020526) #15	ENSCGRG00001002945	Lrp1 (ENSCGRG00001011627) #14	Nxph4 (ENSCGRG00001014648) #13	Shmt2 (ENSCGRG00001018472) #12	Ndufa4l2 (ENSCGRG00001021531) #10	Stac3 (ENSCGRG00001021668) #9
Golden Hamster	MODERN SPECIES	710	Cnpy2 (ENSMAUG00000001150)	Pan2 (ENSMAUG00000012602)	Il23a (ENSMAUG00000011310)	Stat2 (ENSMAUG00000012842) #37	Apof (ENSMAUG00000017165) #36	ENSMAUG00000010695 #34	Mip (ENSMAUG00000012086) #33	Spryd4 (ENSMAUG00000018363) #32	Gls2 (ENSMAUG00000019243) #31	ENSMAUG00000016984 #30	Baz2a (ENSMAUG00000020341) #29	Ptges3 (ENSMAUG00000016336) #27	ENSMAUG00000015543 #26	Prim1 (ENSMAUG00000008749) #25	Sdr9c7 (ENSMAUG00000007487) #23	ENSMAUG00000016734 #22	Gpr182 (ENSMAUG00000015199) #21	Zbtb39 (ENSMAUG00000017199) #20	Tac2 (ENSMAUG00000018582) #19	Myo1a (ENSMAUG00000018930) #18	Nemp1 (ENSMAUG00000004172) #17	Nab2 (ENSMAUG00000004697) #16	Stat6 (ENSMAUG00000000383) #15	Lrp1 (ENSMAUG00000009058) #14	Nxph4 (ENSMAUG00000010802) #13	Shmt2 (ENSMAUG00000014511) #12	ENSMAUG00000016907	Stac3 (ENSMAUG00000017379) #9	ENSMAUG00000012480	Inhbc (ENSMAUG00000013085) #7	Inhbe (ENSMAUG00000008071)
Cricetidae_B	ANCESTRAL SPECIES	35	ENSGT00940000162107	ENSGT00940000160065 #7	ENSGT00940000155609 #8	ENSGT00950000183092.a #9	ENSGT00940000161040 #10	ENSGT00390000002762.a.a #12	ENSGT00950000182883.b.a.b #13	ENSGT00940000157899.b #14	ENSGT01080000257420.C.b.a #15	ENSGT00390000006330.a.b #16	ENSGT00390000002174.a #17	ENSGT00940000160660 #18	ENSGT00390000000335 #19	ENSGT00940000160722 #20	ENSGT00940000154307.D #21	ENSGT00940000154118.b #22	ENSGT00940000161764 #23	ENSGT00940000162028	ENSGT00390000011466 #25	ENSGT00440000033468.c.a ##26	ENSGT00940000154256 #27	ENSGT00550000074800 #28	ENSGT00940000159490 #29	ENSGT00940000155250 #30	ENSGT00390000010463.a.a.a #31	ENSGT00940000159780 #32	ENSGT00940000156260 #33	ENSGT00390000015124 #34	ENSGT00500000045104.g #36	ENSGT01050000244905.C #37	ENSGT00390000006482
Prairie vole	DUPLICATION
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	350	Dlx5 (ENSMOCG00000021591)	Sdhaf3 (ENSMOCG00000004621)	Tac1 (ENSMOCG00000014686)	Asns (ENSMOCG00000011530)	C1galt1 (ENSMOCG00000009499)	Col28a1 (ENSMOCG00000012197)	Mios (ENSMOCG00000017559)	Rpa3 (ENSMOCG00000011090)	Umad1 (ENSMOCG00000016635)	Glcci1 (ENSMOCG00000011098)	ENSMOCG00000019705	ENSMOCG00000008517	Nxph1 (ENSMOCG00000015073) ##13	Ndufa4 (ENSMOCG00000021704)	Phf14 (ENSMOCG00000016636)	ENSMOCG00000008159 #22	Thsd7a (ENSMOCG00000019383)	ENSMOCG00000019332	Tmem106b (ENSMOCG00000019810)	ENSMOCG00000008088	ENSMOCG00000010148	ENSMOCG00000014014	Tmem168 (ENSMOCG00000016323)	Bmt2 (ENSMOCG00000003495)	Gpr85 (ENSMOCG00000007052)	Ppp1r3a (ENSMOCG00000007450)	Foxp2 (ENSMOCG00000018674)	Mdfic (ENSMOCG00000014159)	ENSMOCG00000018404	ENSMOCG00000002194	Tfec (ENSMOCG00000021582)
Prairie vole	MODERN SPECIES	10	R3hdm2 (ENSMOCG00000014425) #8	Stac3 (ENSMOCG00000014255) #9	Ndufa4l2 (ENSMOCG00000005415) #10	Shmt2 (ENSMOCG00000006177) #12	Nxph4 (ENSMOCG00000020468) #13	ENSMOCG00000000670 #14	ENSMOCG00000021063	Stat6 (ENSMOCG00000003830) #15	Nab2 (ENSMOCG00000020714) #16	Nemp1 (ENSMOCG00000011584) #17	Myo1a (ENSMOCG00000011760) #18	Tac2 (ENSMOCG00000000889) #19	Zbtb39 (ENSMOCG00000001699) #20	Gpr182 (ENSMOCG00000017417) #21	ENSMOCG00000020549 #22	ENSMOCG00000011639 #22	ENSMOCG00000005192	ENSMOCG00000012771	Neurod4 (ENSMOCG00000010116)	Tespa1 (ENSMOCG00000011978)	Yeats4 (ENSMOCG00000017260)	Frs2 (ENSMOCG00000012695)	Cct2 (ENSMOCG00000001863)	ENSMOCG00000008051	Best3 (ENSMOCG00000012175)	ENSMOCG00000000389	Myrfl (ENSMOCG00000019020)	Cnot2 (ENSMOCG00000011255)	Kcnmb4 (ENSMOCG00000002276)	Ptprb (ENSMOCG00000009646)	Ptprr (ENSMOCG00000016397)
Prairie vole	MODERN SPECIES	10	Inhbc (ENSMOCG00000001463) #7	R3hdm2 (ENSMOCG00000014425) #8	Stac3 (ENSMOCG00000014255) #9	Ndufa4l2 (ENSMOCG00000005415) #10	Shmt2 (ENSMOCG00000006177) #12	Nxph4 (ENSMOCG00000020468) #13	ENSMOCG00000000670 #14	ENSMOCG00000021063	Stat6 (ENSMOCG00000003830) #15	Nab2 (ENSMOCG00000020714) #16	Nemp1 (ENSMOCG00000011584) #17	Myo1a (ENSMOCG00000011760) #18	Tac2 (ENSMOCG00000000889) #19	Zbtb39 (ENSMOCG00000001699) #20	Gpr182 (ENSMOCG00000017417) #21	ENSMOCG00000020549 #22	ENSMOCG00000011639 #22	ENSMOCG00000005192	ENSMOCG00000012771	Neurod4 (ENSMOCG00000010116)	Tespa1 (ENSMOCG00000011978)	Yeats4 (ENSMOCG00000017260)	Frs2 (ENSMOCG00000012695)	Cct2 (ENSMOCG00000001863)	ENSMOCG00000008051	Best3 (ENSMOCG00000012175)	ENSMOCG00000000389	Myrfl (ENSMOCG00000019020)	Cnot2 (ENSMOCG00000011255)	Kcnmb4 (ENSMOCG00000002276)	Ptprb (ENSMOCG00000009646)
Northern American deer mouse	DUPLICATION
Northern American deer mouse	DUPLICATION
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	9	Tespa1 (ENSPEMG00000023928)	ENSPEMG00000031146 #35	Timeless (ENSPEMG00000017944) #34	Mip (ENSPEMG00000014379) #33	Spryd4 (ENSPEMG00000029549) #32	Gls2 (ENSPEMG00000013787) #31	Rbms2 (ENSPEMG00000012948) #30	Baz2a (ENSPEMG00000018987) #29	Atp5b (ENSPEMG00000013983) #28	Ptges3 (ENSPEMG00000010029) #27	ENSPEMG00000005647 #26	Prim1 (ENSPEMG00000011486) #25	Hsd17b6 (ENSPEMG00000009978)	Sdr9c7 (ENSPEMG00000023090) #23	ENSPEMG00000025710 #22	ENSPEMG00000025627 #22	ENSPEMG00000025685 #22	ENSPEMG00000029591 #22	ENSPEMG00000030154 #22	ENSPEMG00000008778 #22	Gpr182 (ENSPEMG00000012025) #21	Zbtb39 (ENSPEMG00000001529) #20	Tac2 (ENSPEMG00000007115) #19	Myo1a (ENSPEMG00000018549) #18	Nemp1 (ENSPEMG00000000349) #17	Nab2 (ENSPEMG00000003067) #16	Stat6 (ENSPEMG00000006873) #15	Lrp1 (ENSPEMG00000015988) #14	Nxph4 (ENSPEMG00000014406) #13	Shmt2 (ENSPEMG00000015669) #12	Ndufa4l2 (ENSPEMG00000025310) #10
Northern American deer mouse	MODERN SPECIES	9	Inhbe (ENSPEMG00000028054)	Inhbc (ENSPEMG00000017942) #7	R3hdm2 (ENSPEMG00000015964) #8	Stac3 (ENSPEMG00000016520) #9	Ndufa4l2 (ENSPEMG00000025310) #10	Shmt2 (ENSPEMG00000015669) #12	Nxph4 (ENSPEMG00000014406) #13	Lrp1 (ENSPEMG00000015988) #14	Stat6 (ENSPEMG00000006873) #15	Nab2 (ENSPEMG00000003067) #16	Nemp1 (ENSPEMG00000000349) #17	Myo1a (ENSPEMG00000018549) #18	Tac2 (ENSPEMG00000007115) #19	Zbtb39 (ENSPEMG00000001529) #20	Gpr182 (ENSPEMG00000012025) #21	ENSPEMG00000008778 #22	ENSPEMG00000030154 #22	ENSPEMG00000029591 #22	ENSPEMG00000025685 #22	ENSPEMG00000025627 #22	ENSPEMG00000025710 #22	Sdr9c7 (ENSPEMG00000023090) #23	Hsd17b6 (ENSPEMG00000009978)	Prim1 (ENSPEMG00000011486) #25	ENSPEMG00000005647 #26	Ptges3 (ENSPEMG00000010029) #27	Atp5b (ENSPEMG00000013983) #28	Baz2a (ENSPEMG00000018987) #29	Rbms2 (ENSPEMG00000012948) #30	Gls2 (ENSPEMG00000013787) #31	Spryd4 (ENSPEMG00000029549) #32
Northern American deer mouse	DUPLICATION
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	9	Shmt2 (ENSPEMG00000015669) #12	Nxph4 (ENSPEMG00000014406) #13	Lrp1 (ENSPEMG00000015988) #14	Stat6 (ENSPEMG00000006873) #15	Nab2 (ENSPEMG00000003067) #16	Nemp1 (ENSPEMG00000000349) #17	Myo1a (ENSPEMG00000018549) #18	Tac2 (ENSPEMG00000007115) #19	Zbtb39 (ENSPEMG00000001529) #20	Gpr182 (ENSPEMG00000012025) #21	ENSPEMG00000008778 #22	ENSPEMG00000030154 #22	ENSPEMG00000029591 #22	ENSPEMG00000025685 #22	ENSPEMG00000025627 #22	ENSPEMG00000025710 #22	Sdr9c7 (ENSPEMG00000023090) #23	Hsd17b6 (ENSPEMG00000009978)	Prim1 (ENSPEMG00000011486) #25	ENSPEMG00000005647 #26	Ptges3 (ENSPEMG00000010029) #27	Atp5b (ENSPEMG00000013983) #28	Baz2a (ENSPEMG00000018987) #29	Rbms2 (ENSPEMG00000012948) #30	Gls2 (ENSPEMG00000013787) #31	Spryd4 (ENSPEMG00000029549) #32	Mip (ENSPEMG00000014379) #33	Timeless (ENSPEMG00000017944) #34	ENSPEMG00000031146 #35	Tespa1 (ENSPEMG00000023928)	ENSPEMG00000026112
Northern American deer mouse	MODERN SPECIES	9	R3hdm2 (ENSPEMG00000015964) #8	Stac3 (ENSPEMG00000016520) #9	Ndufa4l2 (ENSPEMG00000025310) #10	Shmt2 (ENSPEMG00000015669) #12	Nxph4 (ENSPEMG00000014406) #13	Lrp1 (ENSPEMG00000015988) #14	Stat6 (ENSPEMG00000006873) #15	Nab2 (ENSPEMG00000003067) #16	Nemp1 (ENSPEMG00000000349) #17	Myo1a (ENSPEMG00000018549) #18	Tac2 (ENSPEMG00000007115) #19	Zbtb39 (ENSPEMG00000001529) #20	Gpr182 (ENSPEMG00000012025) #21	ENSPEMG00000008778 #22	ENSPEMG00000030154 #22	ENSPEMG00000029591 #22	ENSPEMG00000025685 #22	ENSPEMG00000025627 #22	ENSPEMG00000025710 #22	Sdr9c7 (ENSPEMG00000023090) #23	Hsd17b6 (ENSPEMG00000009978)	Prim1 (ENSPEMG00000011486) #25	ENSPEMG00000005647 #26	Ptges3 (ENSPEMG00000010029) #27	Atp5b (ENSPEMG00000013983) #28	Baz2a (ENSPEMG00000018987) #29	Rbms2 (ENSPEMG00000012948) #30	Gls2 (ENSPEMG00000013787) #31	Spryd4 (ENSPEMG00000029549) #32	Mip (ENSPEMG00000014379) #33	Timeless (ENSPEMG00000017944) #34
Northern American deer mouse	MODERN SPECIES	9	Stac3 (ENSPEMG00000016520) #9	Ndufa4l2 (ENSPEMG00000025310) #10	Shmt2 (ENSPEMG00000015669) #12	Nxph4 (ENSPEMG00000014406) #13	Lrp1 (ENSPEMG00000015988) #14	Stat6 (ENSPEMG00000006873) #15	Nab2 (ENSPEMG00000003067) #16	Nemp1 (ENSPEMG00000000349) #17	Myo1a (ENSPEMG00000018549) #18	Tac2 (ENSPEMG00000007115) #19	Zbtb39 (ENSPEMG00000001529) #20	Gpr182 (ENSPEMG00000012025) #21	ENSPEMG00000008778 #22	ENSPEMG00000030154 #22	ENSPEMG00000029591 #22	ENSPEMG00000025685 #22	ENSPEMG00000025627 #22	ENSPEMG00000025710 #22	Sdr9c7 (ENSPEMG00000023090) #23	Hsd17b6 (ENSPEMG00000009978)	Prim1 (ENSPEMG00000011486) #25	ENSPEMG00000005647 #26	Ptges3 (ENSPEMG00000010029) #27	Atp5b (ENSPEMG00000013983) #28	Baz2a (ENSPEMG00000018987) #29	Rbms2 (ENSPEMG00000012948) #30	Gls2 (ENSPEMG00000013787) #31	Spryd4 (ENSPEMG00000029549) #32	Mip (ENSPEMG00000014379) #33	Timeless (ENSPEMG00000017944) #34	ENSPEMG00000031146 #35
Northern American deer mouse	MODERN SPECIES	9	Inhbc (ENSPEMG00000017942) #7	R3hdm2 (ENSPEMG00000015964) #8	Stac3 (ENSPEMG00000016520) #9	Ndufa4l2 (ENSPEMG00000025310) #10	Shmt2 (ENSPEMG00000015669) #12	Nxph4 (ENSPEMG00000014406) #13	Lrp1 (ENSPEMG00000015988) #14	Stat6 (ENSPEMG00000006873) #15	Nab2 (ENSPEMG00000003067) #16	Nemp1 (ENSPEMG00000000349) #17	Myo1a (ENSPEMG00000018549) #18	Tac2 (ENSPEMG00000007115) #19	Zbtb39 (ENSPEMG00000001529) #20	Gpr182 (ENSPEMG00000012025) #21	ENSPEMG00000008778 #22	ENSPEMG00000030154 #22	ENSPEMG00000029591 #22	ENSPEMG00000025685 #22	ENSPEMG00000025627 #22	ENSPEMG00000025710 #22	Sdr9c7 (ENSPEMG00000023090) #23	Hsd17b6 (ENSPEMG00000009978)	Prim1 (ENSPEMG00000011486) #25	ENSPEMG00000005647 #26	Ptges3 (ENSPEMG00000010029) #27	Atp5b (ENSPEMG00000013983) #28	Baz2a (ENSPEMG00000018987) #29	Rbms2 (ENSPEMG00000012948) #30	Gls2 (ENSPEMG00000013787) #31	Spryd4 (ENSPEMG00000029549) #32	Mip (ENSPEMG00000014379) #33
Murinae	DUPLICATION
Murinae	ANCESTRAL SPECIES	22	ENSGT00940000160065 #7	ENSGT00940000155609 #8	ENSGT00950000183092.a #9	ENSGT00940000161040 #10	ENSGT00390000002762.a.a #12	ENSGT00950000182883.b.a.b #13	ENSGT00940000157899.b #14	ENSGT01080000257420.C.b.a #15	ENSGT00390000006330.a.b #16	ENSGT00390000002174.a #17	ENSGT00940000160660 #18	ENSGT00390000000335 #19	ENSGT00940000160722 #20	ENSGT00940000154307.D #21	ENSGT00940000154118.a.a.a.a ##22	ENSGT00940000154118.b.w #22	ENSGT00940000161764 #23	ENSGT00940000162028	ENSGT00390000011466 #25	ENSGT00440000033468.c.a ##26	ENSGT00940000154256 #27	ENSGT00550000074800 #28	ENSGT00940000159490 #29	ENSGT00940000155250 #30	ENSGT00390000010463.a.a.a #31	ENSGT00940000159780 #32	ENSGT00940000156260 #33	ENSGT00390000015124 #34	ENSGT00500000045104.h #35	ENSGT00500000045104.g #36	ENSGT01050000244905.C #37
Mus	DUPLICATION
Mus	DUPLICATION
Mus	ANCESTRAL SPECIES	23	ENSGT00940000160065 #7	ENSGT00940000155609 #8	ENSGT00950000183092.a #9	ENSGT00940000161040 #10	ENSGT00390000002762.a.a #12	ENSGT00950000182883.b.a.b #13	ENSGT00940000157899.b #14	ENSGT01080000257420.C.b.a #15	ENSGT00390000006330.a.b #16	ENSGT00390000002174.a #17	ENSGT00940000160660 #18	ENSGT00390000000335 #19	ENSGT00940000160722 #20	ENSGT00940000154307.D #21	ENSGT00940000154118.b.w.b #22	ENSGT00940000154118.b.w.a.a #22	ENSGT00940000154118.b.w.a.b #22	ENSGT00940000154118.b.x #22	ENSGT00940000161764 #23	ENSGT00940000162028	ENSGT00390000011466 #25	ENSGT00440000033468.c.a ##26	ENSGT00940000154256 #27	ENSGT00550000074800 #28	ENSGT00940000159490 #29	ENSGT00940000155250 #30	ENSGT00390000010463.a.a.a #31	ENSGT00940000159780 #32	ENSGT00940000156260 #33	ENSGT00390000015124 #34	ENSGT00500000045104.h #35
Mus_A	ANCESTRAL SPECIES	11	ENSGT00940000160065 #7	ENSGT00940000155609 #8	ENSGT00950000183092.a #9	ENSGT00940000161040 #10	ENSGT00390000002762.a.a #12	ENSGT00950000182883.b.a.b #13	ENSGT00940000157899.b #14	ENSGT01080000257420.C.b.a #15	ENSGT00390000006330.a.b #16	ENSGT00390000002174.a #17	ENSGT00940000160660 #18	ENSGT00390000000335 #19	ENSGT00940000160722 #20	ENSGT00940000154307.D #21	ENSGT00940000154118.b.w.b #22	ENSGT00940000154118.b.w.a.a #22	ENSGT00940000154118.b.w.a.b #22	ENSGT00940000154118.b.x #22	ENSGT00940000161764 #23	ENSGT00940000162028	ENSGT00390000011466 #25	ENSGT00440000033468.c.a ##26	ENSGT00940000154256 #27	ENSGT00550000074800 #28	ENSGT00940000159490 #29	ENSGT00940000155250 #30	ENSGT00390000010463.a.a.a #31	ENSGT00940000159780 #32	ENSGT00940000156260 #33	ENSGT00390000015124 #34	ENSGT00500000045104.h #35
Mus_B	ANCESTRAL SPECIES	10	ENSGT00940000160065 #7	ENSGT00940000155609 #8	ENSGT00950000183092.a #9	ENSGT00940000161040 #10	ENSGT00390000002762.a.a #12	ENSGT00950000182883.b.a.b #13	ENSGT00940000157899.b #14	ENSGT01080000257420.C.b.a #15	ENSGT00390000006330.a.b #16	ENSGT00390000002174.a #17	ENSGT00940000160660 #18	ENSGT00390000000335 #19	ENSGT00940000160722 #20	ENSGT00940000154307.D #21	ENSGT00940000154118.b.w.b #22	ENSGT00940000154118.b.w.a.a #22	ENSGT00940000154118.b.w.a.b #22	ENSGT00940000154118.b.x #22	ENSGT00940000161764 #23	ENSGT00940000162028	ENSGT00390000011466 #25	ENSGT00440000033468.c.a ##26	ENSGT00940000154256 #27	ENSGT00550000074800 #28	ENSGT00940000159490 #29	ENSGT00940000155250 #30	ENSGT00390000010463.a.a.a #31	ENSGT00940000159780 #32	ENSGT00940000156260 #33	ENSGT00390000015124 #34	ENSGT00500000045104.h #35
Mouse	DUPLICATION
Mouse	DUPLICATION
Mouse	MODERN SPECIES	1	Stac3 (ENSMUSG00000040287) #9	Ndufa4l2 (ENSMUSG00000040280) #10	Shmt2 (ENSMUSG00000025403) #12	Nxph4 (ENSMUSG00000040258) #13	Lrp1 (ENSMUSG00000040249) #14	Stat6 (ENSMUSG00000002147) #15	Nab2 (ENSMUSG00000025402) #16	Nemp1 (ENSMUSG00000040195) #17	Myo1a (ENSMUSG00000025401) #18	Tac2 (ENSMUSG00000025400) #19	Zbtb39 (ENSMUSG00000044617) #20	Gpr182 (ENSMUSG00000058396) #21	Rdh1 (ENSMUSG00000089789) #22	Rdh16f1 (ENSMUSG00000099009)	Rdh9 (ENSMUSG00000056148) #22	Rdh16 (ENSMUSG00000069456) #22	Rdh19 (ENSMUSG00000054052) #22	Rdh16f2 (ENSMUSG00000074639) #22	Rdh7 (ENSMUSG00000040134) #22	Sdr9c7 (ENSMUSG00000040127) #23	Hsd17b6 (ENSMUSG00000025396)	Prim1 (ENSMUSG00000025395) #25	Naca (ENSMUSG00000061315) ##26	Ptges3 (ENSMUSG00000071072) #27	Atp5b (ENSMUSG00000025393) #28	Baz2a (ENSMUSG00000040054) #29	Rbms2 (ENSMUSG00000040043) #30	Gls2 (ENSMUSG00000044005) #31	Spryd4 (ENSMUSG00000051346) #32	Mip (ENSMUSG00000025389) #33	Timeless (ENSMUSG00000039994) #34
Mouse	MODERN SPECIES	1	R3hdm2 (ENSMUSG00000025404) #8	Stac3 (ENSMUSG00000040287) #9	Ndufa4l2 (ENSMUSG00000040280) #10	Shmt2 (ENSMUSG00000025403) #12	Nxph4 (ENSMUSG00000040258) #13	Lrp1 (ENSMUSG00000040249) #14	Stat6 (ENSMUSG00000002147) #15	Nab2 (ENSMUSG00000025402) #16	Nemp1 (ENSMUSG00000040195) #17	Myo1a (ENSMUSG00000025401) #18	Tac2 (ENSMUSG00000025400) #19	Zbtb39 (ENSMUSG00000044617) #20	Gpr182 (ENSMUSG00000058396) #21	Rdh1 (ENSMUSG00000089789) #22	Rdh16f1 (ENSMUSG00000099009)	Rdh9 (ENSMUSG00000056148) #22	Rdh16 (ENSMUSG00000069456) #22	Rdh19 (ENSMUSG00000054052) #22	Rdh16f2 (ENSMUSG00000074639) #22	Rdh7 (ENSMUSG00000040134) #22	Sdr9c7 (ENSMUSG00000040127) #23	Hsd17b6 (ENSMUSG00000025396)	Prim1 (ENSMUSG00000025395) #25	Naca (ENSMUSG00000061315) ##26	Ptges3 (ENSMUSG00000071072) #27	Atp5b (ENSMUSG00000025393) #28	Baz2a (ENSMUSG00000040054) #29	Rbms2 (ENSMUSG00000040043) #30	Gls2 (ENSMUSG00000044005) #31	Spryd4 (ENSMUSG00000051346) #32	Mip (ENSMUSG00000025389) #33
Mouse	MODERN SPECIES	1	Ndufa4l2 (ENSMUSG00000040280) #10	Shmt2 (ENSMUSG00000025403) #12	Nxph4 (ENSMUSG00000040258) #13	Lrp1 (ENSMUSG00000040249) #14	Stat6 (ENSMUSG00000002147) #15	Nab2 (ENSMUSG00000025402) #16	Nemp1 (ENSMUSG00000040195) #17	Myo1a (ENSMUSG00000025401) #18	Tac2 (ENSMUSG00000025400) #19	Zbtb39 (ENSMUSG00000044617) #20	Gpr182 (ENSMUSG00000058396) #21	Rdh1 (ENSMUSG00000089789) #22	Rdh16f1 (ENSMUSG00000099009)	Rdh9 (ENSMUSG00000056148) #22	Rdh16 (ENSMUSG00000069456) #22	Rdh19 (ENSMUSG00000054052) #22	Rdh16f2 (ENSMUSG00000074639) #22	Rdh7 (ENSMUSG00000040134) #22	Sdr9c7 (ENSMUSG00000040127) #23	Hsd17b6 (ENSMUSG00000025396)	Prim1 (ENSMUSG00000025395) #25	Naca (ENSMUSG00000061315) ##26	Ptges3 (ENSMUSG00000071072) #27	Atp5b (ENSMUSG00000025393) #28	Baz2a (ENSMUSG00000040054) #29	Rbms2 (ENSMUSG00000040043) #30	Gls2 (ENSMUSG00000044005) #31	Spryd4 (ENSMUSG00000051346) #32	Mip (ENSMUSG00000025389) #33	Timeless (ENSMUSG00000039994) #34	Apon (ENSMUSG00000051716) #35
Shrew mouse	DUPLICATION
Shrew mouse	MODERN SPECIES	22	Stac3 (MGP_PahariEiJ_G0031188) #9	Ndufa4l2 (MGP_PahariEiJ_G0031187) #10	Shmt2 (MGP_PahariEiJ_G0031186) #12	Nxph4 (MGP_PahariEiJ_G0031185) #13	Lrp1 (MGP_PahariEiJ_G0031184) #14	Stat6 (MGP_PahariEiJ_G0031183) #15	Nab2 (MGP_PahariEiJ_G0031182) #16	Nemp1 (MGP_PahariEiJ_G0031181) #17	Myo1a (MGP_PahariEiJ_G0031180) #18	Tac2 (MGP_PahariEiJ_G0031179) #19	Zbtb39 (MGP_PahariEiJ_G0031178) #20	Gpr182 (MGP_PahariEiJ_G0031177) #21	MGP_PahariEiJ_G0031176 #22	MGP_PahariEiJ_G0031175 #22	MGP_PahariEiJ_G0031174 #22	MGP_PahariEiJ_G0031173 #22	Rdh16f2 (MGP_PahariEiJ_G0031172) #22	MGP_PahariEiJ_G0031171 #22	Sdr9c7 (MGP_PahariEiJ_G0031170) #23	Hsd17b6 (MGP_PahariEiJ_G0031169)	Prim1 (MGP_PahariEiJ_G0031168) #25	Naca (MGP_PahariEiJ_G0031167) ##26	Atp5b (MGP_PahariEiJ_G0031165) #28	Baz2a (MGP_PahariEiJ_G0031164) #29	Rbms2 (MGP_PahariEiJ_G0031163) #30	Gls2 (MGP_PahariEiJ_G0031162) #31	Spryd4 (MGP_PahariEiJ_G0031161) #32	Mip (MGP_PahariEiJ_G0031160) #33	Timeless (MGP_PahariEiJ_G0031159) #34	MGP_PahariEiJ_G0031158	MGP_PahariEiJ_G0031157 #36
Shrew mouse	MODERN SPECIES	22	R3hdm2 (MGP_PahariEiJ_G0031189) #8	Stac3 (MGP_PahariEiJ_G0031188) #9	Ndufa4l2 (MGP_PahariEiJ_G0031187) #10	Shmt2 (MGP_PahariEiJ_G0031186) #12	Nxph4 (MGP_PahariEiJ_G0031185) #13	Lrp1 (MGP_PahariEiJ_G0031184) #14	Stat6 (MGP_PahariEiJ_G0031183) #15	Nab2 (MGP_PahariEiJ_G0031182) #16	Nemp1 (MGP_PahariEiJ_G0031181) #17	Myo1a (MGP_PahariEiJ_G0031180) #18	Tac2 (MGP_PahariEiJ_G0031179) #19	Zbtb39 (MGP_PahariEiJ_G0031178) #20	Gpr182 (MGP_PahariEiJ_G0031177) #21	MGP_PahariEiJ_G0031176 #22	MGP_PahariEiJ_G0031175 #22	MGP_PahariEiJ_G0031174 #22	MGP_PahariEiJ_G0031173 #22	Rdh16f2 (MGP_PahariEiJ_G0031172) #22	MGP_PahariEiJ_G0031171 #22	Sdr9c7 (MGP_PahariEiJ_G0031170) #23	Hsd17b6 (MGP_PahariEiJ_G0031169)	Prim1 (MGP_PahariEiJ_G0031168) #25	Naca (MGP_PahariEiJ_G0031167) ##26	Atp5b (MGP_PahariEiJ_G0031165) #28	Baz2a (MGP_PahariEiJ_G0031164) #29	Rbms2 (MGP_PahariEiJ_G0031163) #30	Gls2 (MGP_PahariEiJ_G0031162) #31	Spryd4 (MGP_PahariEiJ_G0031161) #32	Mip (MGP_PahariEiJ_G0031160) #33	Timeless (MGP_PahariEiJ_G0031159) #34	MGP_PahariEiJ_G0031158
Mus	ANCESTRAL SPECIES	23	ENSGT00940000155609 #8	ENSGT00950000183092.a #9	ENSGT00940000161040 #10	ENSGT00390000002762.a.a #12	ENSGT00950000182883.b.a.b #13	ENSGT00940000157899.b #14	ENSGT01080000257420.C.b.a #15	ENSGT00390000006330.a.b #16	ENSGT00390000002174.a #17	ENSGT00940000160660 #18	ENSGT00390000000335 #19	ENSGT00940000160722 #20	ENSGT00940000154307.D #21	ENSGT00940000154118.b.w.b #22	ENSGT00940000154118.b.w.a.a #22	ENSGT00940000154118.b.w.a.b #22	ENSGT00940000154118.b.x #22	ENSGT00940000161764 #23	ENSGT00940000162028	ENSGT00390000011466 #25	ENSGT00440000033468.c.a ##26	ENSGT00940000154256 #27	ENSGT00550000074800 #28	ENSGT00940000159490 #29	ENSGT00940000155250 #30	ENSGT00390000010463.a.a.a #31	ENSGT00940000159780 #32	ENSGT00940000156260 #33	ENSGT00390000015124 #34	ENSGT00500000045104.h #35	ENSGT00500000045104.g #36
Mus_A	ANCESTRAL SPECIES	11	ENSGT00940000155609 #8	ENSGT00950000183092.a #9	ENSGT00940000161040 #10	ENSGT00390000002762.a.a #12	ENSGT00950000182883.b.a.b #13	ENSGT00940000157899.b #14	ENSGT01080000257420.C.b.a #15	ENSGT00390000006330.a.b #16	ENSGT00390000002174.a #17	ENSGT00940000160660 #18	ENSGT00390000000335 #19	ENSGT00940000160722 #20	ENSGT00940000154307.D #21	ENSGT00940000154118.b.w.b #22	ENSGT00940000154118.b.w.a.a #22	ENSGT00940000154118.b.w.a.b #22	ENSGT00940000154118.b.x #22	ENSGT00940000161764 #23	ENSGT00940000162028	ENSGT00390000011466 #25	ENSGT00440000033468.c.a ##26	ENSGT00940000154256 #27	ENSGT00550000074800 #28	ENSGT00940000159490 #29	ENSGT00940000155250 #30	ENSGT00390000010463.a.a.a #31	ENSGT00940000159780 #32	ENSGT00940000156260 #33	ENSGT00390000015124 #34	ENSGT00500000045104.h #35	ENSGT00500000045104.g #36
Mus_B	ANCESTRAL SPECIES	10	ENSGT00940000155609 #8	ENSGT00950000183092.a #9	ENSGT00940000161040 #10	ENSGT00390000002762.a.a #12	ENSGT00950000182883.b.a.b #13	ENSGT00940000157899.b #14	ENSGT01080000257420.C.b.a #15	ENSGT00390000006330.a.b #16	ENSGT00390000002174.a #17	ENSGT00940000160660 #18	ENSGT00390000000335 #19	ENSGT00940000160722 #20	ENSGT00940000154307.D #21	ENSGT00940000154118.b.w.b #22	ENSGT00940000154118.b.w.a.a #22	ENSGT00940000154118.b.w.a.b #22	ENSGT00940000154118.b.x #22	ENSGT00940000161764 #23	ENSGT00940000162028	ENSGT00390000011466 #25	ENSGT00440000033468.c.a ##26	ENSGT00940000154256 #27	ENSGT00550000074800 #28	ENSGT00940000159490 #29	ENSGT00940000155250 #30	ENSGT00390000010463.a.a.a #31	ENSGT00940000159780 #32	ENSGT00940000156260 #33	ENSGT00390000015124 #34	ENSGT00500000045104.h #35	ENSGT00500000045104.g #36
Mouse	MODERN SPECIES	1	Shmt2 (ENSMUSG00000025403) #12	Nxph4 (ENSMUSG00000040258) #13	Lrp1 (ENSMUSG00000040249) #14	Stat6 (ENSMUSG00000002147) #15	Nab2 (ENSMUSG00000025402) #16	Nemp1 (ENSMUSG00000040195) #17	Myo1a (ENSMUSG00000025401) #18	Tac2 (ENSMUSG00000025400) #19	Zbtb39 (ENSMUSG00000044617) #20	Gpr182 (ENSMUSG00000058396) #21	Rdh1 (ENSMUSG00000089789) #22	Rdh16f1 (ENSMUSG00000099009)	Rdh9 (ENSMUSG00000056148) #22	Rdh16 (ENSMUSG00000069456) #22	Rdh19 (ENSMUSG00000054052) #22	Rdh16f2 (ENSMUSG00000074639) #22	Rdh7 (ENSMUSG00000040134) #22	Sdr9c7 (ENSMUSG00000040127) #23	Hsd17b6 (ENSMUSG00000025396)	Prim1 (ENSMUSG00000025395) #25	Naca (ENSMUSG00000061315) ##26	Ptges3 (ENSMUSG00000071072) #27	Atp5b (ENSMUSG00000025393) #28	Baz2a (ENSMUSG00000040054) #29	Rbms2 (ENSMUSG00000040043) #30	Gls2 (ENSMUSG00000044005) #31	Spryd4 (ENSMUSG00000051346) #32	Mip (ENSMUSG00000025389) #33	Timeless (ENSMUSG00000039994) #34	Apon (ENSMUSG00000051716) #35	Apof (ENSMUSG00000047631) #36
Mus_C	ANCESTRAL SPECIES	7	ENSGT00940000162107	ENSGT00940000160065 #7	ENSGT00940000155609 #8	ENSGT00950000183092.a #9	ENSGT00940000161040 #10	ENSGT00390000002762.a.a #12	ENSGT00950000182883.b.a.b #13	ENSGT00940000157899.b #14	ENSGT01080000257420.C.b.a #15	ENSGT00390000006330.a.b #16	ENSGT00390000002174.a #17	ENSGT00940000160660 #18	ENSGT00390000000335 #19	ENSGT00940000160722 #20	ENSGT00940000154307.D #21	ENSGT00940000154118.b.w.a.b #22	ENSGT00940000161764 #23	ENSGT00390000011466 #25	ENSGT00440000033468.c.a ##26	ENSGT00940000154256 #27	ENSGT00550000074800 #28	ENSGT00940000159490 #29	ENSGT00940000155250 #30	ENSGT00390000010463.a.a.a #31	ENSGT00940000159780 #32	ENSGT00940000156260 #33	ENSGT00390000015124 #34	ENSGT00500000045104.h #35	ENSGT00500000045104.g #36	ENSGT01050000244905.C #37	ENSGT00390000006482
spretus	DUPLICATION
spretus	MODERN SPECIES	1	Gli1 (MGP_SPRETEiJ_G0016719)	Inhbe (MGP_SPRETEiJ_G0016720)	Inhbc (MGP_SPRETEiJ_G0016721) #7	R3hdm2 (MGP_SPRETEiJ_G0016722) #8	Stac3 (MGP_SPRETEiJ_G0016723) #9	Ndufa4l2 (MGP_SPRETEiJ_G0016724) #10	Shmt2 (MGP_SPRETEiJ_G0016725) #12	Nxph4 (MGP_SPRETEiJ_G0016726) #13	Lrp1 (MGP_SPRETEiJ_G0016727) #14	Stat6 (MGP_SPRETEiJ_G0016728) #15	Nab2 (MGP_SPRETEiJ_G0016729) #16	Myo1a (MGP_SPRETEiJ_G0016731) #18	Tac2 (MGP_SPRETEiJ_G0016732) #19	Zbtb39 (MGP_SPRETEiJ_G0016733) #20	Gpr182 (MGP_SPRETEiJ_G0016734) #21	MGP_SPRETEiJ_G0016735 #22	MGP_SPRETEiJ_G0016737 ##22	MGP_SPRETEiJ_G0016738 #22	Sdr9c7 (MGP_SPRETEiJ_G0016739) #23	Hsd17b6 (MGP_SPRETEiJ_G0016740)	Prim1 (MGP_SPRETEiJ_G0016741) #25	Naca (MGP_SPRETEiJ_G0016742) ##26	Ptges3 (MGP_SPRETEiJ_G0016743) #27	Atp5b (MGP_SPRETEiJ_G0016744) #28	Baz2a (MGP_SPRETEiJ_G0016745) #29	Rbms2 (MGP_SPRETEiJ_G0016746) #30	Gls2 (MGP_SPRETEiJ_G0016747) #31	Spryd4 (MGP_SPRETEiJ_G0016748) #32	Mip (MGP_SPRETEiJ_G0016749) #33	Timeless (MGP_SPRETEiJ_G0016750) #34	Apon (MGP_SPRETEiJ_G0016751) #35
spretus	MODERN SPECIES	1	Inhbc (MGP_SPRETEiJ_G0016721) #7	R3hdm2 (MGP_SPRETEiJ_G0016722) #8	Stac3 (MGP_SPRETEiJ_G0016723) #9	Ndufa4l2 (MGP_SPRETEiJ_G0016724) #10	Shmt2 (MGP_SPRETEiJ_G0016725) #12	Nxph4 (MGP_SPRETEiJ_G0016726) #13	Lrp1 (MGP_SPRETEiJ_G0016727) #14	Stat6 (MGP_SPRETEiJ_G0016728) #15	Nab2 (MGP_SPRETEiJ_G0016729) #16	Myo1a (MGP_SPRETEiJ_G0016731) #18	Tac2 (MGP_SPRETEiJ_G0016732) #19	Zbtb39 (MGP_SPRETEiJ_G0016733) #20	Gpr182 (MGP_SPRETEiJ_G0016734) #21	MGP_SPRETEiJ_G0016735 #22	MGP_SPRETEiJ_G0016737 ##22	MGP_SPRETEiJ_G0016738 #22	Sdr9c7 (MGP_SPRETEiJ_G0016739) #23	Hsd17b6 (MGP_SPRETEiJ_G0016740)	Prim1 (MGP_SPRETEiJ_G0016741) #25	Naca (MGP_SPRETEiJ_G0016742) ##26	Ptges3 (MGP_SPRETEiJ_G0016743) #27	Atp5b (MGP_SPRETEiJ_G0016744) #28	Baz2a (MGP_SPRETEiJ_G0016745) #29	Rbms2 (MGP_SPRETEiJ_G0016746) #30	Gls2 (MGP_SPRETEiJ_G0016747) #31	Spryd4 (MGP_SPRETEiJ_G0016748) #32	Mip (MGP_SPRETEiJ_G0016749) #33	Timeless (MGP_SPRETEiJ_G0016750) #34	Apon (MGP_SPRETEiJ_G0016751) #35	Apof (MGP_SPRETEiJ_G0016752) #36	Stat2 (MGP_SPRETEiJ_G0016753) #37
Steppe mouse	MODERN SPECIES	2596	Inhbe (ENSMSIG00000000566)	Inhbc (ENSMSIG00000000587) #7	R3hdm2 (ENSMSIG00000000757) #8	Stac3 (ENSMSIG00000002644) #9	Ndufa4l2 (ENSMSIG00000002715) #10	Shmt2 (ENSMSIG00000002744) #12	Nxph4 (ENSMSIG00000002804) #13	Lrp1 (ENSMSIG00000002847) #14	Stat6 (ENSMSIG00000003202) #15	Nab2 (ENSMSIG00000003392) #16	Nemp1 (ENSMSIG00000003480) #17	Myo1a (ENSMSIG00000003896) #18	Tac2 (ENSMSIG00000019140) #19	Zbtb39 (ENSMSIG00000019165) #20	Gpr182 (ENSMSIG00000019172) #21	Rdh16f2 (ENSMSIG00000019184) #22
Shrew mouse	MODERN SPECIES	22	Ndufa4l2 (MGP_PahariEiJ_G0031187) #10	Shmt2 (MGP_PahariEiJ_G0031186) #12	Nxph4 (MGP_PahariEiJ_G0031185) #13	Lrp1 (MGP_PahariEiJ_G0031184) #14	Stat6 (MGP_PahariEiJ_G0031183) #15	Nab2 (MGP_PahariEiJ_G0031182) #16	Nemp1 (MGP_PahariEiJ_G0031181) #17	Myo1a (MGP_PahariEiJ_G0031180) #18	Tac2 (MGP_PahariEiJ_G0031179) #19	Zbtb39 (MGP_PahariEiJ_G0031178) #20	Gpr182 (MGP_PahariEiJ_G0031177) #21	MGP_PahariEiJ_G0031176 #22	MGP_PahariEiJ_G0031175 #22	MGP_PahariEiJ_G0031174 #22	MGP_PahariEiJ_G0031173 #22	Rdh16f2 (MGP_PahariEiJ_G0031172) #22	MGP_PahariEiJ_G0031171 #22	Sdr9c7 (MGP_PahariEiJ_G0031170) #23	Hsd17b6 (MGP_PahariEiJ_G0031169)	Prim1 (MGP_PahariEiJ_G0031168) #25	Naca (MGP_PahariEiJ_G0031167) ##26	Atp5b (MGP_PahariEiJ_G0031165) #28	Baz2a (MGP_PahariEiJ_G0031164) #29	Rbms2 (MGP_PahariEiJ_G0031163) #30	Gls2 (MGP_PahariEiJ_G0031162) #31	Spryd4 (MGP_PahariEiJ_G0031161) #32	Mip (MGP_PahariEiJ_G0031160) #33	Timeless (MGP_PahariEiJ_G0031159) #34	MGP_PahariEiJ_G0031158	MGP_PahariEiJ_G0031157 #36	MGP_PahariEiJ_G0031156 #37
Mus	ANCESTRAL SPECIES	23	ENSGT00940000162107	ENSGT00940000160065 #7	ENSGT00940000155609 #8	ENSGT00950000183092.a #9	ENSGT00940000161040 #10	ENSGT00390000002762.a.a #12	ENSGT00950000182883.b.a.b #13	ENSGT00940000157899.b #14	ENSGT01080000257420.C.b.a #15	ENSGT00390000006330.a.b #16	ENSGT00390000002174.a #17	ENSGT00940000160660 #18	ENSGT00390000000335 #19	ENSGT00940000160722 #20	ENSGT00940000154307.D #21	ENSGT00940000154118.b.w.b #22	ENSGT00940000154118.b.w.a.a #22	ENSGT00940000154118.b.w.a.b #22	ENSGT00940000154118.b.x #22	ENSGT00940000161764 #23	ENSGT00940000162028	ENSGT00390000011466 #25	ENSGT00440000033468.c.a ##26	ENSGT00940000154256 #27	ENSGT00550000074800 #28	ENSGT00940000159490 #29	ENSGT00940000155250 #30	ENSGT00390000010463.a.a.a #31	ENSGT00940000159780 #32	ENSGT00940000156260 #33	ENSGT00390000015124 #34
Mus_A	ANCESTRAL SPECIES	11	ENSGT00940000162107	ENSGT00940000160065 #7	ENSGT00940000155609 #8	ENSGT00950000183092.a #9	ENSGT00940000161040 #10	ENSGT00390000002762.a.a #12	ENSGT00950000182883.b.a.b #13	ENSGT00940000157899.b #14	ENSGT01080000257420.C.b.a #15	ENSGT00390000006330.a.b #16	ENSGT00390000002174.a #17	ENSGT00940000160660 #18	ENSGT00390000000335 #19	ENSGT00940000160722 #20	ENSGT00940000154307.D #21	ENSGT00940000154118.b.w.b #22	ENSGT00940000154118.b.w.a.a #22	ENSGT00940000154118.b.w.a.b #22	ENSGT00940000154118.b.x #22	ENSGT00940000161764 #23	ENSGT00940000162028	ENSGT00390000011466 #25	ENSGT00440000033468.c.a ##26	ENSGT00940000154256 #27	ENSGT00550000074800 #28	ENSGT00940000159490 #29	ENSGT00940000155250 #30	ENSGT00390000010463.a.a.a #31	ENSGT00940000159780 #32	ENSGT00940000156260 #33	ENSGT00390000015124 #34
Ryukyu mouse	MODERN SPECIES	1	Inhbe (MGP_CAROLIEiJ_G0015894)	Inhbc (MGP_CAROLIEiJ_G0015895) #7	R3hdm2 (MGP_CAROLIEiJ_G0015896) #8	Stac3 (MGP_CAROLIEiJ_G0015897) #9	Ndufa4l2 (MGP_CAROLIEiJ_G0015898) #10	Shmt2 (MGP_CAROLIEiJ_G0015899) #12	Nxph4 (MGP_CAROLIEiJ_G0015900) #13	Lrp1 (MGP_CAROLIEiJ_G0015901) #14	Stat6 (MGP_CAROLIEiJ_G0015902) #15	Nab2 (MGP_CAROLIEiJ_G0015903) #16	Nemp1 (MGP_CAROLIEiJ_G0015904) #17	Myo1a (MGP_CAROLIEiJ_G0015905) #18	Tac2 (MGP_CAROLIEiJ_G0015906) #19	Zbtb39 (MGP_CAROLIEiJ_G0015907) #20	Gpr182 (MGP_CAROLIEiJ_G0015908) #21	Rdh1 (MGP_CAROLIEiJ_G0015909) #22	MGP_CAROLIEiJ_G0015911 ##22	MGP_CAROLIEiJ_G0015912 ##22	Rdh7 (MGP_CAROLIEiJ_G0015913) #22	Sdr9c7 (MGP_CAROLIEiJ_G0015914) #23	MGP_CAROLIEiJ_G0015915	Prim1 (MGP_CAROLIEiJ_G0015916) #25	Naca (MGP_CAROLIEiJ_G0015917) ##26	Atp5b (MGP_CAROLIEiJ_G0015919) #28	Baz2a (MGP_CAROLIEiJ_G0015920) #29	Rbms2 (MGP_CAROLIEiJ_G0015921) #30	Gls2 (MGP_CAROLIEiJ_G0015922) #31	Spryd4 (MGP_CAROLIEiJ_G0015923) #32	Mip (MGP_CAROLIEiJ_G0015924) #33	Timeless (MGP_CAROLIEiJ_G0015925) #34	Apon (MGP_CAROLIEiJ_G0015926) #35
Mus_B	ANCESTRAL SPECIES	10	ENSGT00940000162107	ENSGT00940000160065 #7	ENSGT00940000155609 #8	ENSGT00950000183092.a #9	ENSGT00940000161040 #10	ENSGT00390000002762.a.a #12	ENSGT00950000182883.b.a.b #13	ENSGT00940000157899.b #14	ENSGT01080000257420.C.b.a #15	ENSGT00390000006330.a.b #16	ENSGT00390000002174.a #17	ENSGT00940000160660 #18	ENSGT00390000000335 #19	ENSGT00940000160722 #20	ENSGT00940000154307.D #21	ENSGT00940000154118.b.w.b #22	ENSGT00940000154118.b.w.a.a #22	ENSGT00940000154118.b.w.a.b #22	ENSGT00940000154118.b.x #22	ENSGT00940000161764 #23	ENSGT00940000162028	ENSGT00390000011466 #25	ENSGT00440000033468.c.a ##26	ENSGT00940000154256 #27	ENSGT00550000074800 #28	ENSGT00940000159490 #29	ENSGT00940000155250 #30	ENSGT00390000010463.a.a.a #31	ENSGT00940000159780 #32	ENSGT00940000156260 #33	ENSGT00390000015124 #34
Mouse	MODERN SPECIES	1	Inhbe (ENSMUSG00000047492)	Inhbc (ENSMUSG00000025405) #7	R3hdm2 (ENSMUSG00000025404) #8	Stac3 (ENSMUSG00000040287) #9	Ndufa4l2 (ENSMUSG00000040280) #10	Shmt2 (ENSMUSG00000025403) #12	Nxph4 (ENSMUSG00000040258) #13	Lrp1 (ENSMUSG00000040249) #14	Stat6 (ENSMUSG00000002147) #15	Nab2 (ENSMUSG00000025402) #16	Nemp1 (ENSMUSG00000040195) #17	Myo1a (ENSMUSG00000025401) #18	Tac2 (ENSMUSG00000025400) #19	Zbtb39 (ENSMUSG00000044617) #20	Gpr182 (ENSMUSG00000058396) #21	Rdh1 (ENSMUSG00000089789) #22	Rdh16f1 (ENSMUSG00000099009)	Rdh9 (ENSMUSG00000056148) #22	Rdh16 (ENSMUSG00000069456) #22	Rdh19 (ENSMUSG00000054052) #22	Rdh16f2 (ENSMUSG00000074639) #22	Rdh7 (ENSMUSG00000040134) #22	Sdr9c7 (ENSMUSG00000040127) #23	Hsd17b6 (ENSMUSG00000025396)	Prim1 (ENSMUSG00000025395) #25	Naca (ENSMUSG00000061315) ##26	Ptges3 (ENSMUSG00000071072) #27	Atp5b (ENSMUSG00000025393) #28	Baz2a (ENSMUSG00000040054) #29	Rbms2 (ENSMUSG00000040043) #30	Gls2 (ENSMUSG00000044005) #31
Shrew mouse	DUPLICATION
Shrew mouse	MODERN SPECIES	22	Inhbe (MGP_PahariEiJ_G0031191)	Inhbc (MGP_PahariEiJ_G0031190) #7	R3hdm2 (MGP_PahariEiJ_G0031189) #8	Stac3 (MGP_PahariEiJ_G0031188) #9	Ndufa4l2 (MGP_PahariEiJ_G0031187) #10	Shmt2 (MGP_PahariEiJ_G0031186) #12	Nxph4 (MGP_PahariEiJ_G0031185) #13	Lrp1 (MGP_PahariEiJ_G0031184) #14	Stat6 (MGP_PahariEiJ_G0031183) #15	Nab2 (MGP_PahariEiJ_G0031182) #16	Nemp1 (MGP_PahariEiJ_G0031181) #17	Myo1a (MGP_PahariEiJ_G0031180) #18	Tac2 (MGP_PahariEiJ_G0031179) #19	Zbtb39 (MGP_PahariEiJ_G0031178) #20	Gpr182 (MGP_PahariEiJ_G0031177) #21	MGP_PahariEiJ_G0031176 #22	MGP_PahariEiJ_G0031175 #22	MGP_PahariEiJ_G0031174 #22	MGP_PahariEiJ_G0031173 #22	Rdh16f2 (MGP_PahariEiJ_G0031172) #22	MGP_PahariEiJ_G0031171 #22	Sdr9c7 (MGP_PahariEiJ_G0031170) #23	Hsd17b6 (MGP_PahariEiJ_G0031169)	Prim1 (MGP_PahariEiJ_G0031168) #25	Naca (MGP_PahariEiJ_G0031167) ##26	Atp5b (MGP_PahariEiJ_G0031165) #28	Baz2a (MGP_PahariEiJ_G0031164) #29	Rbms2 (MGP_PahariEiJ_G0031163) #30	Gls2 (MGP_PahariEiJ_G0031162) #31	Spryd4 (MGP_PahariEiJ_G0031161) #32	Mip (MGP_PahariEiJ_G0031160) #33
Shrew mouse	MODERN SPECIES	22	Inhbc (MGP_PahariEiJ_G0031190) #7	R3hdm2 (MGP_PahariEiJ_G0031189) #8	Stac3 (MGP_PahariEiJ_G0031188) #9	Ndufa4l2 (MGP_PahariEiJ_G0031187) #10	Shmt2 (MGP_PahariEiJ_G0031186) #12	Nxph4 (MGP_PahariEiJ_G0031185) #13	Lrp1 (MGP_PahariEiJ_G0031184) #14	Stat6 (MGP_PahariEiJ_G0031183) #15	Nab2 (MGP_PahariEiJ_G0031182) #16	Nemp1 (MGP_PahariEiJ_G0031181) #17	Myo1a (MGP_PahariEiJ_G0031180) #18	Tac2 (MGP_PahariEiJ_G0031179) #19	Zbtb39 (MGP_PahariEiJ_G0031178) #20	Gpr182 (MGP_PahariEiJ_G0031177) #21	MGP_PahariEiJ_G0031176 #22	MGP_PahariEiJ_G0031175 #22	MGP_PahariEiJ_G0031174 #22	MGP_PahariEiJ_G0031173 #22	Rdh16f2 (MGP_PahariEiJ_G0031172) #22	MGP_PahariEiJ_G0031171 #22	Sdr9c7 (MGP_PahariEiJ_G0031170) #23	Hsd17b6 (MGP_PahariEiJ_G0031169)	Prim1 (MGP_PahariEiJ_G0031168) #25	Naca (MGP_PahariEiJ_G0031167) ##26	Atp5b (MGP_PahariEiJ_G0031165) #28	Baz2a (MGP_PahariEiJ_G0031164) #29	Rbms2 (MGP_PahariEiJ_G0031163) #30	Gls2 (MGP_PahariEiJ_G0031162) #31	Spryd4 (MGP_PahariEiJ_G0031161) #32	Mip (MGP_PahariEiJ_G0031160) #33	Timeless (MGP_PahariEiJ_G0031159) #34
Rat	MODERN SPECIES	17	Inhbe (ENSRNOG00000007601)	Inhbc (ENSRNOG00000007700) #7	R3hdm2 (ENSRNOG00000007801) #8	Stac3 (ENSRNOG00000008050) #9	Ndufa4l2 (ENSRNOG00000031851) #10	Shmt2 (ENSRNOG00000008106) #12	Nxph4 (ENSRNOG00000025059) #13	Lrp1 (ENSRNOG00000025053) #14	Stat6 (ENSRNOG00000025023) #15	Nemp1 (ENSRNOG00000046492) #17	Nab2 (ENSRNOG00000008415) #16	Myo1a (ENSRNOG00000004177) #18	Tac3 (ENSRNOG00000004229) #19	Zbtb39 (ENSRNOG00000004306) #20	Gpr182 (ENSRNOG00000004311) #21	Rdh16 (ENSRNOG00000029651) #22	ENSRNOG00000067654	Rdh7 (ENSRNOG00000004391) #22	Sdr9c7 (ENSRNOG00000004459) #23	Uqcrb (ENSRNOG00000024967)	Mterf3 (ENSRNOG00000004492)	Ptdss1 (ENSRNOG00000052289)	AABR07057438.1 (ENSRNOG00000033952)	Sdc2 (ENSRNOG00000004936)	Cpq (ENSRNOG00000005931)	Tspyl5 (ENSRNOG00000006278)	RGD1562404 (ENSRNOG00000014169)	ENSRNOG00000066306	Mtdh (ENSRNOG00000006870)	ENSRNOG00000068626	Laptm4b (ENSRNOG00000006766)
Murinae	ANCESTRAL SPECIES																	ENSGT00940000154118.b.x #22
Mus	ANCESTRAL SPECIES	23	ENSGT01050000244905.C #37	ENSGT00500000045104.g #36	ENSGT00500000045104.h #35	ENSGT00390000015124 #34	ENSGT00940000156260 #33	ENSGT00940000159780 #32	ENSGT00390000010463.a.a.a #31	ENSGT00940000155250 #30	ENSGT00940000159490 #29	ENSGT00550000074800 #28	ENSGT00940000154256 #27	ENSGT00440000033468.c.a ##26	ENSGT00390000011466 #25	ENSGT00940000162028	ENSGT00940000161764 #23	ENSGT00940000154118.b.x #22	ENSGT00940000154118.b.w.a.b #22	ENSGT00940000154118.b.w.a.a #22	ENSGT00940000154118.b.w.b #22	ENSGT00940000154307.D #21	ENSGT00940000160722 #20	ENSGT00390000000335 #19	ENSGT00940000160660 #18	ENSGT00390000002174.a #17	ENSGT00390000006330.a.b #16	ENSGT01080000257420.C.b.a #15	ENSGT00940000157899.b #14	ENSGT00950000182883.b.a.b #13	ENSGT00390000002762.a.a #12	ENSGT00940000161040 #10	ENSGT00950000183092.a #9
Mus_A	ANCESTRAL SPECIES	11	ENSGT01050000244905.C #37	ENSGT00500000045104.g #36	ENSGT00500000045104.h #35	ENSGT00390000015124 #34	ENSGT00940000156260 #33	ENSGT00940000159780 #32	ENSGT00390000010463.a.a.a #31	ENSGT00940000155250 #30	ENSGT00940000159490 #29	ENSGT00550000074800 #28	ENSGT00940000154256 #27	ENSGT00440000033468.c.a ##26	ENSGT00390000011466 #25	ENSGT00940000162028	ENSGT00940000161764 #23	ENSGT00940000154118.b.x #22	ENSGT00940000154118.b.w.a.b #22	ENSGT00940000154118.b.w.a.a #22	ENSGT00940000154118.b.w.b #22	ENSGT00940000154307.D #21	ENSGT00940000160722 #20	ENSGT00390000000335 #19	ENSGT00940000160660 #18	ENSGT00390000002174.a #17	ENSGT00390000006330.a.b #16	ENSGT01080000257420.C.b.a #15	ENSGT00940000157899.b #14	ENSGT00950000182883.b.a.b #13	ENSGT00390000002762.a.a #12	ENSGT00940000161040 #10	ENSGT00950000183092.a #9
Mus_B	ANCESTRAL SPECIES	10	ENSGT01050000244905.C #37	ENSGT00500000045104.g #36	ENSGT00500000045104.h #35	ENSGT00390000015124 #34	ENSGT00940000156260 #33	ENSGT00940000159780 #32	ENSGT00390000010463.a.a.a #31	ENSGT00940000155250 #30	ENSGT00940000159490 #29	ENSGT00550000074800 #28	ENSGT00940000154256 #27	ENSGT00440000033468.c.a ##26	ENSGT00390000011466 #25	ENSGT00940000162028	ENSGT00940000161764 #23	ENSGT00940000154118.b.x #22	ENSGT00940000154118.b.w.a.b #22	ENSGT00940000154118.b.w.a.a #22	ENSGT00940000154118.b.w.b #22	ENSGT00940000154307.D #21	ENSGT00940000160722 #20	ENSGT00390000000335 #19	ENSGT00940000160660 #18	ENSGT00390000002174.a #17	ENSGT00390000006330.a.b #16	ENSGT01080000257420.C.b.a #15	ENSGT00940000157899.b #14	ENSGT00950000182883.b.a.b #13	ENSGT00390000002762.a.a #12	ENSGT00940000161040 #10	ENSGT00950000183092.a #9
Mouse	MODERN SPECIES	1	Stat2 (ENSMUSG00000040033) #37	Apof (ENSMUSG00000047631) #36	Apon (ENSMUSG00000051716) #35	Timeless (ENSMUSG00000039994) #34	Mip (ENSMUSG00000025389) #33	Spryd4 (ENSMUSG00000051346) #32	Gls2 (ENSMUSG00000044005) #31	Rbms2 (ENSMUSG00000040043) #30	Baz2a (ENSMUSG00000040054) #29	Atp5b (ENSMUSG00000025393) #28	Ptges3 (ENSMUSG00000071072) #27	Naca (ENSMUSG00000061315) ##26	Prim1 (ENSMUSG00000025395) #25	Hsd17b6 (ENSMUSG00000025396)	Sdr9c7 (ENSMUSG00000040127) #23	Rdh7 (ENSMUSG00000040134) #22	Rdh16f2 (ENSMUSG00000074639) #22	Rdh19 (ENSMUSG00000054052) #22	Rdh16 (ENSMUSG00000069456) #22	Rdh9 (ENSMUSG00000056148) #22	Rdh16f1 (ENSMUSG00000099009)	Rdh1 (ENSMUSG00000089789) #22	Gpr182 (ENSMUSG00000058396) #21	Zbtb39 (ENSMUSG00000044617) #20	Tac2 (ENSMUSG00000025400) #19	Myo1a (ENSMUSG00000025401) #18	Nemp1 (ENSMUSG00000040195) #17	Nab2 (ENSMUSG00000025402) #16	Stat6 (ENSMUSG00000002147) #15	Lrp1 (ENSMUSG00000040249) #14	Nxph4 (ENSMUSG00000040258) #13
Ryukyu mouse	MODERN SPECIES	1	Il23a (MGP_CAROLIEiJ_G0015929)	Stat2 (MGP_CAROLIEiJ_G0015928) #37	Apof (MGP_CAROLIEiJ_G0015927) #36	Apon (MGP_CAROLIEiJ_G0015926) #35	Timeless (MGP_CAROLIEiJ_G0015925) #34	Mip (MGP_CAROLIEiJ_G0015924) #33	Spryd4 (MGP_CAROLIEiJ_G0015923) #32	Gls2 (MGP_CAROLIEiJ_G0015922) #31	Rbms2 (MGP_CAROLIEiJ_G0015921) #30	Baz2a (MGP_CAROLIEiJ_G0015920) #29	Atp5b (MGP_CAROLIEiJ_G0015919) #28	Naca (MGP_CAROLIEiJ_G0015917) ##26	Prim1 (MGP_CAROLIEiJ_G0015916) #25	MGP_CAROLIEiJ_G0015915	Sdr9c7 (MGP_CAROLIEiJ_G0015914) #23	Rdh7 (MGP_CAROLIEiJ_G0015913) #22	MGP_CAROLIEiJ_G0015912 ##22	MGP_CAROLIEiJ_G0015911 ##22	Rdh1 (MGP_CAROLIEiJ_G0015909) #22	Gpr182 (MGP_CAROLIEiJ_G0015908) #21	Zbtb39 (MGP_CAROLIEiJ_G0015907) #20	Tac2 (MGP_CAROLIEiJ_G0015906) #19	Myo1a (MGP_CAROLIEiJ_G0015905) #18	Nemp1 (MGP_CAROLIEiJ_G0015904) #17	Nab2 (MGP_CAROLIEiJ_G0015903) #16	Stat6 (MGP_CAROLIEiJ_G0015902) #15	Lrp1 (MGP_CAROLIEiJ_G0015901) #14	Nxph4 (MGP_CAROLIEiJ_G0015900) #13	Shmt2 (MGP_CAROLIEiJ_G0015899) #12	Ndufa4l2 (MGP_CAROLIEiJ_G0015898) #10	Stac3 (MGP_CAROLIEiJ_G0015897) #9
Shrew mouse	MODERN SPECIES	22	Il23a (MGP_PahariEiJ_G0031155)	MGP_PahariEiJ_G0031156 #37	MGP_PahariEiJ_G0031157 #36	MGP_PahariEiJ_G0031158	Timeless (MGP_PahariEiJ_G0031159) #34	Mip (MGP_PahariEiJ_G0031160) #33	Spryd4 (MGP_PahariEiJ_G0031161) #32	Gls2 (MGP_PahariEiJ_G0031162) #31	Rbms2 (MGP_PahariEiJ_G0031163) #30	Baz2a (MGP_PahariEiJ_G0031164) #29	Atp5b (MGP_PahariEiJ_G0031165) #28	Naca (MGP_PahariEiJ_G0031167) ##26	Prim1 (MGP_PahariEiJ_G0031168) #25	Hsd17b6 (MGP_PahariEiJ_G0031169)	Sdr9c7 (MGP_PahariEiJ_G0031170) #23	MGP_PahariEiJ_G0031171 #22	Rdh16f2 (MGP_PahariEiJ_G0031172) #22	MGP_PahariEiJ_G0031173 #22	MGP_PahariEiJ_G0031174 #22	MGP_PahariEiJ_G0031175 #22	MGP_PahariEiJ_G0031176 #22	Gpr182 (MGP_PahariEiJ_G0031177) #21	Zbtb39 (MGP_PahariEiJ_G0031178) #20	Tac2 (MGP_PahariEiJ_G0031179) #19	Myo1a (MGP_PahariEiJ_G0031180) #18	Nemp1 (MGP_PahariEiJ_G0031181) #17	Nab2 (MGP_PahariEiJ_G0031182) #16	Stat6 (MGP_PahariEiJ_G0031183) #15	Lrp1 (MGP_PahariEiJ_G0031184) #14	Nxph4 (MGP_PahariEiJ_G0031185) #13	Shmt2 (MGP_PahariEiJ_G0031186) #12
Rat	MODERN SPECIES	17	Erich5 (ENSRNOG00000005956)	Matn2 (ENSRNOG00000006060)	Laptm4b (ENSRNOG00000006766)	ENSRNOG00000068626	Mtdh (ENSRNOG00000006870)	ENSRNOG00000066306	RGD1562404 (ENSRNOG00000014169)	Tspyl5 (ENSRNOG00000006278)	Cpq (ENSRNOG00000005931)	Sdc2 (ENSRNOG00000004936)	AABR07057438.1 (ENSRNOG00000033952)	Ptdss1 (ENSRNOG00000052289)	Mterf3 (ENSRNOG00000004492)	Uqcrb (ENSRNOG00000024967)	Sdr9c7 (ENSRNOG00000004459) #23	Rdh7 (ENSRNOG00000004391) #22	ENSRNOG00000067654	Rdh16 (ENSRNOG00000029651) #22	Gpr182 (ENSRNOG00000004311) #21	Zbtb39 (ENSRNOG00000004306) #20	Tac3 (ENSRNOG00000004229) #19	Myo1a (ENSRNOG00000004177) #18	Nab2 (ENSRNOG00000008415) #16	Nemp1 (ENSRNOG00000046492) #17	Stat6 (ENSRNOG00000025023) #15	Lrp1 (ENSRNOG00000025053) #14	Nxph4 (ENSRNOG00000025059) #13	Shmt2 (ENSRNOG00000008106) #12	Ndufa4l2 (ENSRNOG00000031851) #10	Stac3 (ENSRNOG00000008050) #9	R3hdm2 (ENSRNOG00000007801) #8
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	606																ENSNGAG00000020260 #22	ENSNGAG00000020704	ENSNGAG00000020955 #22	Sdr9c7 (ENSNGAG00000021175) #23	ENSNGAG00000007035 #25	ENSNGAG00000009199 #26	Ptges3 (ENSNGAG00000010865) #27	Atp5b (ENSNGAG00000021013) #28	Baz2a (ENSNGAG00000021737) #29	Rbms2 (ENSNGAG00000001476) #30	Gls2 (ENSNGAG00000016238) #31	Spryd4 (ENSNGAG00000012514) #32
Upper Galilee mountains blind mole rat	MODERN SPECIES	606														ENSNGAG00000020260 #22	ENSNGAG00000020704	ENSNGAG00000020955 #22	Sdr9c7 (ENSNGAG00000021175) #23	ENSNGAG00000007035 #25	ENSNGAG00000009199 #26	Ptges3 (ENSNGAG00000010865) #27	Atp5b (ENSNGAG00000021013) #28	Baz2a (ENSNGAG00000021737) #29	Rbms2 (ENSNGAG00000001476) #30	Gls2 (ENSNGAG00000016238) #31	Spryd4 (ENSNGAG00000012514) #32
Lagomorpha	ANCESTRAL SPECIES	87	ENSGT00940000162107	ENSGT00940000160065 #7	ENSGT00940000155609 #8	ENSGT00950000183092.a #9	ENSGT00940000161040 #10	ENSGT00390000002762.a.a #12	ENSGT00940000157899.b #14	ENSGT01080000257420.C.b.a #15	ENSGT00390000006330.a.b #16	ENSGT00390000002174.a #17	ENSGT00940000160660 #18	ENSGT00390000000335 #19	ENSGT00940000160722 #20	ENSGT00940000154307.D #21	ENSGT00940000162028	ENSGT00940000154118.b #22	ENSGT00940000161764 #23	ENSGT00390000011466 #25
Pika	DUPLICATION
Pika	MODERN SPECIES	8319																ENSOPRG00000014038 #22
Pika	MODERN SPECIES	10731																ENSOPRG00000006772 #22
Rabbit	DUPLICATION
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	447	INHBE (ENSOCUG00000007382)	INHBC (ENSOCUG00000007380) #7	R3HDM2 (ENSOCUG00000013258) #8	STAC3 (ENSOCUG00000013251) #9	NDUFA4L2 (ENSOCUG00000023263) #10	SHMT2 (ENSOCUG00000013242) #12	ENSOCUG00000037050	STAT6 (ENSOCUG00000007929) #15	NAB2 (ENSOCUG00000024399) #16	NEMP1 (ENSOCUG00000013180) #17	MYO1A (ENSOCUG00000001335) #18	ENSOCUG00000032767 #19	ZBTB39 (ENSOCUG00000002811) #20	GPR182 (ENSOCUG00000002813) #21	ENSOCUG00000032670 #22	ENSOCUG00000011778 #22	ENSOCUG00000033629	ENSOCUG00000002732 #22	SDR9C7 (ENSOCUG00000003423) #23	ENSOCUG00000035045	ENSOCUG00000003458 #25
Rabbit	MODERN SPECIES	447	GLI1 (ENSOCUG00000011128)	INHBE (ENSOCUG00000007382)	INHBC (ENSOCUG00000007380) #7	R3HDM2 (ENSOCUG00000013258) #8	STAC3 (ENSOCUG00000013251) #9	NDUFA4L2 (ENSOCUG00000023263) #10	SHMT2 (ENSOCUG00000013242) #12	ENSOCUG00000037050	STAT6 (ENSOCUG00000007929) #15	NAB2 (ENSOCUG00000024399) #16	NEMP1 (ENSOCUG00000013180) #17	MYO1A (ENSOCUG00000001335) #18	ENSOCUG00000032767 #19	ZBTB39 (ENSOCUG00000002811) #20	GPR182 (ENSOCUG00000002813) #21	ENSOCUG00000032670 #22	ENSOCUG00000011778 #22	ENSOCUG00000033629	ENSOCUG00000002732 #22	SDR9C7 (ENSOCUG00000003423) #23	ENSOCUG00000035045	ENSOCUG00000003458 #25
Rabbit	MODERN SPECIES	447	R3HDM2 (ENSOCUG00000013258) #8	STAC3 (ENSOCUG00000013251) #9	NDUFA4L2 (ENSOCUG00000023263) #10	SHMT2 (ENSOCUG00000013242) #12	ENSOCUG00000037050	STAT6 (ENSOCUG00000007929) #15	NAB2 (ENSOCUG00000024399) #16	NEMP1 (ENSOCUG00000013180) #17	MYO1A (ENSOCUG00000001335) #18	ENSOCUG00000032767 #19	ZBTB39 (ENSOCUG00000002811) #20	GPR182 (ENSOCUG00000002813) #21	ENSOCUG00000032670 #22	ENSOCUG00000011778 #22	ENSOCUG00000033629	ENSOCUG00000002732 #22	SDR9C7 (ENSOCUG00000003423) #23	ENSOCUG00000035045	ENSOCUG00000003458 #25
Tree shrew	MODERN SPECIES	10465																RDH16 (ENSTBEG00000015696) #22	SDR9C7 (ENSTBEG00000015595) #23