Theria	ANCESTRAL SPECIES	22	ENSGT00940000159637	ENSGT00940000160717	ENSGT00530000062962.b.a #7	ENSGT00390000009486 #8	ENSGT01030000234532.B.e.b #9	ENSGT00940000155836.B #10	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #20	ENSGT00940000157369 #21	ENSGT00940000158146 #22	ENSGT00940000153499.b.b #24	ENSGT00390000007218 #25	ENSGT00390000008908 #26	ENSGT00390000015942	ENSGT00940000157505 #28	ENSGT00940000158440 #29	ENSGT01030000234539.a.a.b.a.b #30	ENSGT00940000157859 #31	ENSGT00400000022240 #32	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591
Eutheria	ANCESTRAL SPECIES	8	ENSGT00940000159637	ENSGT00940000160717	ENSGT00530000062962.b.a #7	ENSGT00390000009486 #8	ENSGT01030000234532.B.e.b #9	ENSGT00940000155836.B #10	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #20	ENSGT00940000157369 #21	ENSGT00940000158146 #22	ENSGT00940000153499.b.b #24	ENSGT00390000007218 #25	ENSGT00390000008908 #26	ENSGT00390000015942	ENSGT00940000157505 #28	ENSGT00940000158440 #29	ENSGT01030000234539.a.a.b.a.b #30	ENSGT00940000157859 #31	ENSGT00400000022240 #32	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591
Boreoeutheria	ANCESTRAL SPECIES	3	ENSGT00530000062962.b.a #7	ENSGT00390000009486 #8	ENSGT01030000234532.B.e.b #9	ENSGT00940000155836.B #10	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #20	ENSGT00940000157369 #21	ENSGT00910000147890	ENSGT00910000147041	ENSGT00940000158146 #22	ENSGT00860000136046	ENSGT00940000153499.b.b #24	ENSGT00390000007218 #25	ENSGT00390000008908 #26	ENSGT00390000015942	ENSGT00910000146962	ENSGT00960000188521	ENSGT00940000157505 #28	ENSGT00940000158440 #29	ENSGT01030000234539.a.a.b.a.b #30	ENSGT00940000157859 #31	ENSGT00400000022240 #32	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35
Euarchontoglires	ANCESTRAL SPECIES	3	ENSGT00530000062962.b.a #7	ENSGT00390000009486 #8	ENSGT01030000234532.B.e.b #9	ENSGT00940000155836.B #10	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #20	ENSGT00940000157369 #21	ENSGT00910000147890	ENSGT00910000147041	ENSGT00940000158146 #22	ENSGT00860000136046	ENSGT00940000153499.b.b #24	ENSGT00390000007218 #25	ENSGT00390000008908 #26	ENSGT00390000015942	ENSGT00910000146962	ENSGT00940000157505 #28	ENSGT00940000158440 #29	ENSGT01030000234539.a.a.b.a.b #30	ENSGT00940000157859 #31	ENSGT00400000022240 #32	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36
Euarchontoglires_A	ANCESTRAL SPECIES	3	ENSGT00940000159637	ENSGT00940000160717	ENSGT00530000062962.b.a #7	ENSGT00390000009486 #8	ENSGT01030000234532.B.e.b #9	ENSGT00940000155836.B #10	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #20	ENSGT00940000157369 #21	ENSGT00940000158146 #22	ENSGT00940000153499.b.b #24	ENSGT00390000007218 #25	ENSGT00390000008908 #26	ENSGT00390000015942	ENSGT00940000157505 #28	ENSGT00940000158440 #29	ENSGT01030000234539.a.a.b.a.b #30	ENSGT00940000157859 #31	ENSGT00400000022240 #32	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591
Glires	ANCESTRAL SPECIES	15	ENSGT00940000159637	ENSGT00940000160717	ENSGT00530000062962.b.a #7	ENSGT00390000009486 #8	ENSGT01030000234532.B.e.b #9	ENSGT00940000155836.B #10	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #20	ENSGT00940000157369 #21	ENSGT00940000158146 #22	ENSGT00940000153499.b.b #24	ENSGT00390000007218 #25	ENSGT00390000008908 #26	ENSGT00390000015942	ENSGT00940000157505 #28	ENSGT00940000158440 #29	ENSGT01030000234539.a.a.b.a.b #30	ENSGT00940000157859 #31	ENSGT00400000022240 #32	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591
Rodentia	ANCESTRAL SPECIES	3	ENSGT00940000159637	ENSGT00940000160717	ENSGT00530000062962.b.a #7	ENSGT00390000009486 #8	ENSGT01030000234532.B.e.b #9	ENSGT00940000155836.B #10	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #20	ENSGT00940000157369 #21	ENSGT00940000158146 #22	ENSGT00940000153499.b.b #24	ENSGT00390000007218 #25	ENSGT00390000008908 #26	ENSGT00390000015942	ENSGT00940000157505 #28	ENSGT00940000158440 #29	ENSGT01030000234539.a.a.b.a.b #30	ENSGT00940000157859 #31	ENSGT00400000022240 #32	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00940000159637	ENSGT00940000160717	ENSGT00530000062962.b.a #7	ENSGT00390000009486 #8	ENSGT01030000234532.B.e.b #9	ENSGT00940000155836.B #10	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #20	ENSGT00940000157369 #21	ENSGT00940000158146 #22	ENSGT00940000153499.b.b #24	ENSGT00390000007218 #25	ENSGT00390000008908 #26	ENSGT00390000015942	ENSGT00940000157505 #28	ENSGT00940000158440 #29	ENSGT01030000234539.a.a.b.a.b #30	ENSGT00940000157859 #31	ENSGT00400000022240 #32	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591
Sciuridae	ANCESTRAL SPECIES	11	ENSGT00940000159637	ENSGT00940000160717	ENSGT00530000062962.b.a #7	ENSGT00390000009486 #8	ENSGT01030000234532.B.e.b #9	ENSGT00940000155836.B #10	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #20	ENSGT00940000157369 #21	ENSGT00940000158146 #22	ENSGT00940000153499.b.b #24	ENSGT00390000007218 #25	ENSGT00390000008908 #26	ENSGT00390000015942	ENSGT00940000157505 #28	ENSGT00940000158440 #29	ENSGT01030000234539.a.a.b.a.b #30	ENSGT00940000157859 #31	ENSGT00400000022240 #32	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591
Marmotini	ANCESTRAL SPECIES	9	ENSGT00940000159637	ENSGT00940000160717	ENSGT00530000062962.b.a #7	ENSGT00390000009486 #8	ENSGT01030000234532.B.e.b #9	ENSGT00940000155836.B #10	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #16	ENSGT00390000010331 #17	ENSGT00390000018145 #18	ENSGT00390000013696 #20	ENSGT00940000157369 #21	ENSGT00940000158146 #22	ENSGT00940000153499.b.b #24	ENSGT00390000007218 #25	ENSGT00390000008908 #26	ENSGT00390000015942	ENSGT00940000157505 #28	ENSGT00940000158440 #29	ENSGT01030000234539.a.a.b.a.b #30	ENSGT00940000157859 #31	ENSGT00400000022240 #32	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591
Alpin marmot	MODERN SPECIES	7	HACD3 (ENSMMMG00000006884) #7	INTS14 (ENSMMMG00000006868) #8	SLC24A1 (ENSMMMG00000006817) #9	DENND4A (ENSMMMG00000006769) #10	ENSMMMG00000006762 #11	RAB11A (ENSMMMG00000006747) #12	MEGF11 (ENSMMMG00000006311) #13	DIS3L (ENSMMMG00000006220) #14	TIPIN (ENSMMMG00000006196) #15	MAP2K1 (ENSMMMG00000006173) #16	SNAPC5 (ENSMMMG00000006163) #17	RPL4 (ENSMMMG00000006109) #18	ENSMMMG00000006104 #19	ZWILCH (ENSMMMG00000006077) #20	LCTL (ENSMMMG00000006061) #21	SMAD6 (ENSMMMG00000006032) #22	ENSMMMG00000006027 #23	SMAD3 (ENSMMMG00000005977) #24	AAGAB (ENSMMMG00000005970) #25	IQCH (ENSMMMG00000005869) #26	ENSMMMG00000005844 #27	MAP2K5 (ENSMMMG00000005809) #28	SKOR1 (ENSMMMG00000005773) #29	PIAS1 (ENSMMMG00000005733) #30	CALML4 (ENSMMMG00000005699) #31	CLN6 (ENSMMMG00000005687) #32	ENSMMMG00000005671 #33	ITGA11 (ENSMMMG00000005622) #34	CORO2B (ENSMMMG00000005600) #35	ENSMMMG00000005555 #36	SPESP1 (ENSMMMG00000005545) #37