Murinae	ANCESTRAL SPECIES	3	ENSGT00940000159637 #7	ENSGT00940000160717 #8	ENSGT00530000062962.b.a #9	ENSGT00390000009486 #10	ENSGT01030000234532.B.e.b #11	ENSGT00940000155836.B #12	ENSGT00940000154914 #14	ENSGT00940000155333.B #15	ENSGT00530000063106.B #16	ENSGT00390000005764 #17	ENSGT00940000153487.b.b #18	ENSGT00390000010331	ENSGT00390000018145 #19	ENSGT00390000013696 #20	ENSGT00940000157369 #21	ENSGT00940000158146 #22	ENSGT00940000153499.b.b #23	ENSGT00390000007218 #24	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #28	ENSGT00940000158440 #29	ENSGT01030000234539.a.a.b.a.b #30	ENSGT00940000157859 #31	ENSGT00400000022240 #32	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00390000006043
Rat	MODERN SPECIES	18	Igdcc4 (ENSRNOG00000033496) #7	Dpp8 (ENSRNOG00000019105) #8	Hacd3 (ENSRNOG00000030232) #9	Ints14 (ENSRNOG00000012469) #10	Slc24a1 (ENSRNOG00000052051) #11	Dennd4a (ENSRNOG00000011739) #12	LOC120094392 (ENSRNOG00000071140) #13	Rab11a (ENSRNOG00000011302) #14	Megf11 (ENSRNOG00000010634) #15	Dis3l (ENSRNOG00000010537) #16	Tipin (ENSRNOG00000043068) #17	Map2k1 (ENSRNOG00000010176) #18	Rpl4 (ENSRNOG00000009378) #19	Zwilch (ENSRNOG00000009303) #20	Lctl (ENSRNOG00000009193) #21	Smad6 (ENSRNOG00000009173) #22	Smad3 (ENSRNOG00000008620) #23	Aagab (ENSRNOG00000008424) #24	Iqch (ENSRNOG00000008353) #25	C8h15orf61 (ENSRNOG00000008340) #26	AC132740.1 (ENSRNOG00000054780) #27	Map2k5 (ENSRNOG00000007926) #28	Skor1 (ENSRNOG00000013959) #29	Pias1 (ENSRNOG00000034272) #30	Calml4 (ENSRNOG00000038202) #31	Cln6 (ENSRNOG00000007164) #32	Fem1b (ENSRNOG00000007077) #33	Itga11 (ENSRNOG00000006723) #34	Coro2b (ENSRNOG00000015257) #35	Anp32a (ENSRNOG00000014846) #36	Spesp1 (ENSRNOG00000025359) #37
Mus	ANCESTRAL SPECIES	4	ENSGT00940000159637 #7	ENSGT00940000160717 #8	ENSGT00530000062962.b.a #9	ENSGT00390000009486 #10	ENSGT01030000234532.B.e.b #11	ENSGT00940000155836.B #12	ENSGT00940000154914 #14	ENSGT00940000155333.B #15	ENSGT00530000063106.B #16	ENSGT00390000005764 #17	ENSGT00940000153487.b.b #18	ENSGT00390000010331	ENSGT00390000018145 #19	ENSGT00390000013696 #20	ENSGT00940000157369 #21	ENSGT00940000158146 #22	ENSGT00940000153499.b.b #23	ENSGT00390000007218 #24	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #28	ENSGT00940000158440 #29	ENSGT01030000234539.a.a.b.a.b #30	ENSGT00940000157859 #31	ENSGT00400000022240 #32	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00390000006043
Mus_A	ANCESTRAL SPECIES	4	ENSGT00940000159637 #7	ENSGT00940000160717 #8	ENSGT00530000062962.b.a #9	ENSGT00390000009486 #10	ENSGT01030000234532.B.e.b #11	ENSGT00940000155836.B #12	ENSGT00940000154914 #14	ENSGT00940000155333.B #15	ENSGT00530000063106.B #16	ENSGT00390000005764 #17	ENSGT00940000153487.b.b #18	ENSGT00390000010331	ENSGT00390000018145 #19	ENSGT00390000013696 #20	ENSGT00940000157369 #21	ENSGT00940000158146 #22	ENSGT00940000153499.b.b #23	ENSGT00390000007218 #24	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #28	ENSGT00940000158440 #29	ENSGT01030000234539.a.a.b.a.b #30	ENSGT00940000157859 #31	ENSGT00400000022240 #32	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00390000006043
Mus_B	ANCESTRAL SPECIES	3	ENSGT00940000160717 #8	ENSGT00530000062962.b.a #9	ENSGT00390000009486 #10	ENSGT01030000234532.B.e.b #11	ENSGT00940000155836.B #12	ENSGT00940000154914 #14	ENSGT00940000155333.B #15	ENSGT00530000063106.B #16	ENSGT00390000005764 #17	ENSGT00940000154925.c.a	ENSGT00940000153487.b.b #18	ENSGT00390000010331	ENSGT00390000018145 #19	ENSGT00390000013696 #20	ENSGT00940000157369 #21	ENSGT00940000158146 #22	ENSGT00940000153499.b.b #23	ENSGT00390000007218 #24	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #28	ENSGT00940000158440 #29	ENSGT01030000234539.a.a.b.a.b #30	ENSGT00940000157859.e.b #31	ENSGT00400000022240 #32	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00390000006043
Mouse	MODERN SPECIES	18	Dpp8 (ENSMUSG00000032393) #8	Hacd3 (ENSMUSG00000033629) #9	Ints14 (ENSMUSG00000034263) #10	Slc24a1 (ENSMUSG00000034452) #11	Dennd4a (ENSMUSG00000053641) #12	Rab11a (ENSMUSG00000004771) #14	Megf11 (ENSMUSG00000036466) #15	Dis3l (ENSMUSG00000032396) #16	Tipin (ENSMUSG00000032397) #17	Uchl4 (ENSMUSG00000035337)	Map2k1 (ENSMUSG00000004936) #18	Snapc5 (ENSMUSG00000032398)	Rpl4 (ENSMUSG00000032399) #19	Zwilch (ENSMUSG00000032400) #20	Lctl (ENSMUSG00000032401) #21	Smad6 (ENSMUSG00000036867) #22	Smad3 (ENSMUSG00000032402) #23	Aagab (ENSMUSG00000037257) #24	Iqch (ENSMUSG00000037801) #25	2300009A05Rik (ENSMUSG00000032403) #26	Map2k5 (ENSMUSG00000058444) #28	Skor1 (ENSMUSG00000022245) #29	Pias1 (ENSMUSG00000032405) #30	Calml4 (ENSMUSG00000032246) #31	Cln6 (ENSMUSG00000032245) #32	Fem1b (ENSMUSG00000032244) #33	Itga11 (ENSMUSG00000032243) #34	Coro2b (ENSMUSG00000041729) #35	Anp32a (ENSMUSG00000032249) #36	Spesp1 (ENSMUSG00000046846) #37	Glce (ENSMUSG00000032252)
Mus_C	ANCESTRAL SPECIES	8	ENSGT00940000160717 #8	ENSGT00530000062962.b.a #9	ENSGT00390000009486 #10	ENSGT01030000234532.B.e.b #11	ENSGT00940000155836.B #12	ENSGT00940000154914 #14	ENSGT00940000155333.B #15	ENSGT00530000063106.B #16	ENSGT00390000005764 #17	ENSGT00940000154925.c.a	ENSGT00940000153487.b.b #18	ENSGT00390000010331	ENSGT00390000018145 #19	ENSGT00390000013696 #20	ENSGT00940000157369 #21	ENSGT00940000158146 #22	ENSGT00940000153499.b.b #23	ENSGT00390000007218 #24	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #28	ENSGT00940000158440 #29	ENSGT01030000234539.a.a.b.a.b #30	ENSGT00940000157859.e.b #31	ENSGT00400000022240 #32	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00390000006043
spretus	MODERN SPECIES	18	Dpp8 (MGP_SPRETEiJ_G0033490) #8	Hacd3 (MGP_SPRETEiJ_G0033489) #9	Ints14 (MGP_SPRETEiJ_G0033488) #10	Slc24a1 (MGP_SPRETEiJ_G0033487) #11	Dennd4a (MGP_SPRETEiJ_G0033486) #12	Rab11a (MGP_SPRETEiJ_G0033485) #14	Megf11 (MGP_SPRETEiJ_G0033484) #15	Dis3l (MGP_SPRETEiJ_G0033483) #16	Tipin (MGP_SPRETEiJ_G0033482) #17	MGP_SPRETEiJ_G0033481	Map2k1 (MGP_SPRETEiJ_G0033480) #18	Snapc5 (MGP_SPRETEiJ_G0033479)	Rpl4 (MGP_SPRETEiJ_G0033478) #19	Zwilch (MGP_SPRETEiJ_G0033477) #20	Lctl (MGP_SPRETEiJ_G0033476) #21	Smad6 (MGP_SPRETEiJ_G0033475) #22	Smad3 (MGP_SPRETEiJ_G0033474) #23	Aagab (MGP_SPRETEiJ_G0033473) #24	Iqch (MGP_SPRETEiJ_G0033472) #25	2300009A05Rik (MGP_SPRETEiJ_G0033471) #26	Map2k5 (MGP_SPRETEiJ_G0033470) #28	Skor1 (MGP_SPRETEiJ_G0033469) #29	Pias1 (MGP_SPRETEiJ_G0033468) #30	Calml4 (MGP_SPRETEiJ_G0033467) #31	MGP_SPRETEiJ_G0033466	Cln6 (MGP_SPRETEiJ_G0033465) #32	Fem1b (MGP_SPRETEiJ_G0033464) #33	Itga11 (MGP_SPRETEiJ_G0033463) #34	Coro2b (MGP_SPRETEiJ_G0033462) #35	Anp32a (MGP_SPRETEiJ_G0033461) #36	Spesp1 (MGP_SPRETEiJ_G0033460) #37
Steppe mouse	MODERN SPECIES	3365	Ints14 (ENSMSIG00000005077) #10	Slc24a1 (ENSMSIG00000005039) #11	Dennd4a (ENSMSIG00000004975) #12	Rab11a (ENSMSIG00000004938) #14	Megf11 (ENSMSIG00000004481) #15	Dis3l (ENSMSIG00000004353) #16	Tipin (ENSMSIG00000004296) #17	Uchl4 (ENSMSIG00000004289)	Map2k1 (ENSMSIG00000004246) #18	Snapc5 (ENSMSIG00000004231)	Rpl4 (ENSMSIG00000004124) #19	Zwilch (ENSMSIG00000003872) #20	Lctl (ENSMSIG00000003776) #21	ENSMSIG00000003769	ENSMSIG00000003749	Smad6 (ENSMSIG00000003718) #22	ENSMSIG00000003710	Smad3 (ENSMSIG00000003679) #23	Aagab (ENSMSIG00000003642) #24	ENSMSIG00000003630	Iqch (ENSMSIG00000002651) #25	2300009A05Rik (ENSMSIG00000002599) #26	Map2k5 (ENSMSIG00000002321) #28	Skor1 (ENSMSIG00000002179) #29	Pias1 (ENSMSIG00000002027) #30	ENSMSIG00000001996 #31	Cln6 (ENSMSIG00000001974) #32	Fem1b (ENSMSIG00000001951) #33	Itga11 (ENSMSIG00000001884) #34	Coro2b (ENSMSIG00000001799) #35	ENSMSIG00000001693 #36
Ryukyu mouse	MODERN SPECIES	18	Dpp8 (MGP_CAROLIEiJ_G0032351) #8	Hacd3 (MGP_CAROLIEiJ_G0032350) #9	Ints14 (MGP_CAROLIEiJ_G0032349) #10	Slc24a1 (MGP_CAROLIEiJ_G0032348) #11	Dennd4a (MGP_CAROLIEiJ_G0032347) #12	Rab11a (MGP_CAROLIEiJ_G0032346) #14	Megf11 (MGP_CAROLIEiJ_G0032345) #15	Dis3l (MGP_CAROLIEiJ_G0032344) #16	Tipin (MGP_CAROLIEiJ_G0032343) #17	MGP_CAROLIEiJ_G0032342	Map2k1 (MGP_CAROLIEiJ_G0032341) #18	Snapc5 (MGP_CAROLIEiJ_G0032340)	Rpl4 (MGP_CAROLIEiJ_G0032339) #19	Zwilch (MGP_CAROLIEiJ_G0032338) #20	Lctl (MGP_CAROLIEiJ_G0032337) #21	Smad6 (MGP_CAROLIEiJ_G0032336) #22	Smad3 (MGP_CAROLIEiJ_G0032335) #23	Aagab (MGP_CAROLIEiJ_G0032334) #24	Iqch (MGP_CAROLIEiJ_G0032333) #25	2300009A05Rik (MGP_CAROLIEiJ_G0032332) #26	Map2k5 (MGP_CAROLIEiJ_G0032331) #28	Skor1 (MGP_CAROLIEiJ_G0032330) #29	Pias1 (MGP_CAROLIEiJ_G0032329) #30	Calml4 (MGP_CAROLIEiJ_G0032328) #31	Cln6 (MGP_CAROLIEiJ_G0032327) #32	Fem1b (MGP_CAROLIEiJ_G0032326) #33	Itga11 (MGP_CAROLIEiJ_G0032325) #34	Coro2b (MGP_CAROLIEiJ_G0032324) #35	Anp32a (MGP_CAROLIEiJ_G0032323) #36	Spesp1 (MGP_CAROLIEiJ_G0032322) #37	Glce (MGP_CAROLIEiJ_G0032321)
Shrew mouse	MODERN SPECIES	1	MGP_PahariEiJ_G0015218	Igdcc4 (MGP_PahariEiJ_G0015217) #7	Dpp8 (MGP_PahariEiJ_G0015216) #8	Hacd3 (MGP_PahariEiJ_G0015215) #9	Ints14 (MGP_PahariEiJ_G0015214) #10	Slc24a1 (MGP_PahariEiJ_G0015213) #11	Dennd4a (MGP_PahariEiJ_G0015212) #12	Rab11a (MGP_PahariEiJ_G0015211) #14	Megf11 (MGP_PahariEiJ_G0015210) #15	Dis3l (MGP_PahariEiJ_G0015209) #16	Tipin (MGP_PahariEiJ_G0015208) #17	Map2k1 (MGP_PahariEiJ_G0015207) #18	Snapc5 (MGP_PahariEiJ_G0015206)	Rpl4 (MGP_PahariEiJ_G0015205) #19	Zwilch (MGP_PahariEiJ_G0015204) #20	Smad6 (MGP_PahariEiJ_G0015202) #22	Smad3 (MGP_PahariEiJ_G0015201) #23	Aagab (MGP_PahariEiJ_G0015200) #24	Iqch (MGP_PahariEiJ_G0015199) #25	2300009A05Rik (MGP_PahariEiJ_G0015198) #26	Map2k5 (MGP_PahariEiJ_G0015197) #28	Skor1 (MGP_PahariEiJ_G0015196) #29	Pias1 (MGP_PahariEiJ_G0015195) #30	Calml4 (MGP_PahariEiJ_G0015194) #31	MGP_PahariEiJ_G0015193	Fem1b (MGP_PahariEiJ_G0015192) #33	Itga11 (MGP_PahariEiJ_G0015191) #34	Coro2b (MGP_PahariEiJ_G0015190) #35	Anp32a (MGP_PahariEiJ_G0015189) #36	Spesp1 (MGP_PahariEiJ_G0015188) #37	Glce (MGP_PahariEiJ_G0015187)