Mus_A	ANCESTRAL SPECIES	4	ENSGT00940000159637	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000153487.b.b #17	ENSGT00390000010331 #18	ENSGT00390000018145 #19	ENSGT00390000013696 #20	ENSGT00940000157369 #21	ENSGT00940000158146 #22	ENSGT00940000153499.b.b #23	ENSGT00390000007218 #24	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859 #30	ENSGT00400000022240 #32	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00390000006043
Mus_B	ANCESTRAL SPECIES	3	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000154925.c.a ##16	ENSGT00940000153487.b.b #17	ENSGT00390000010331 #18	ENSGT00390000018145 #19	ENSGT00390000013696 #20	ENSGT00940000157369 #21	ENSGT00940000158146 #22	ENSGT00940000153499.b.b #23	ENSGT00390000007218 #24	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859.e.b ##30	ENSGT00400000022240 #32	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00390000006043
Mus_C	ANCESTRAL SPECIES	8	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #11	ENSGT00940000154914 #12	ENSGT00940000155333.B #13	ENSGT00530000063106.B #14	ENSGT00390000005764 #15	ENSGT00940000154925.c.a ##16	ENSGT00940000153487.b.b #17	ENSGT00390000010331 #18	ENSGT00390000018145 #19	ENSGT00390000013696 #20	ENSGT00940000157369 #21	ENSGT00940000158146 #22	ENSGT00940000153499.b.b #23	ENSGT00390000007218 #24	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #27	ENSGT00940000158440 #28	ENSGT01030000234539.a.a.b.a.b #29	ENSGT00940000157859.e.b ##30	ENSGT00400000022240 #32	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00390000006043
spretus	MODERN SPECIES	18	Dpp8 (MGP_SPRETEiJ_G0033490) #7	Hacd3 (MGP_SPRETEiJ_G0033489) #8	Ints14 (MGP_SPRETEiJ_G0033488) #9	Slc24a1 (MGP_SPRETEiJ_G0033487) #10	Dennd4a (MGP_SPRETEiJ_G0033486) #11	Rab11a (MGP_SPRETEiJ_G0033485) #12	Megf11 (MGP_SPRETEiJ_G0033484) #13	Dis3l (MGP_SPRETEiJ_G0033483) #14	Tipin (MGP_SPRETEiJ_G0033482) #15	MGP_SPRETEiJ_G0033481 #16	Map2k1 (MGP_SPRETEiJ_G0033480) #17	Snapc5 (MGP_SPRETEiJ_G0033479) #18	Rpl4 (MGP_SPRETEiJ_G0033478) #19	Zwilch (MGP_SPRETEiJ_G0033477) #20	Lctl (MGP_SPRETEiJ_G0033476) #21	Smad6 (MGP_SPRETEiJ_G0033475) #22	Smad3 (MGP_SPRETEiJ_G0033474) #23	Aagab (MGP_SPRETEiJ_G0033473) #24	Iqch (MGP_SPRETEiJ_G0033472) #25	2300009A05Rik (MGP_SPRETEiJ_G0033471) #26	Map2k5 (MGP_SPRETEiJ_G0033470) #27	Skor1 (MGP_SPRETEiJ_G0033469) #28	Pias1 (MGP_SPRETEiJ_G0033468) #29	Calml4 (MGP_SPRETEiJ_G0033467) #30	MGP_SPRETEiJ_G0033466 #31	Cln6 (MGP_SPRETEiJ_G0033465) #32	Fem1b (MGP_SPRETEiJ_G0033464) #33	Itga11 (MGP_SPRETEiJ_G0033463) #34	Coro2b (MGP_SPRETEiJ_G0033462) #35	Anp32a (MGP_SPRETEiJ_G0033461) #36	Spesp1 (MGP_SPRETEiJ_G0033460) #37
Steppe mouse	MODERN SPECIES	3365	Ints14 (ENSMSIG00000005077) #9	Slc24a1 (ENSMSIG00000005039) #10	Dennd4a (ENSMSIG00000004975) #11	Rab11a (ENSMSIG00000004938) #12	Megf11 (ENSMSIG00000004481) #13	Dis3l (ENSMSIG00000004353) #14	Tipin (ENSMSIG00000004296) #15	Uchl4 (ENSMSIG00000004289) ##16	Map2k1 (ENSMSIG00000004246) #17	Snapc5 (ENSMSIG00000004231) #18	Rpl4 (ENSMSIG00000004124) #19	Zwilch (ENSMSIG00000003872) #20	Lctl (ENSMSIG00000003776) #21	ENSMSIG00000003769	ENSMSIG00000003749	Smad6 (ENSMSIG00000003718) #22	ENSMSIG00000003710	Smad3 (ENSMSIG00000003679) #23	Aagab (ENSMSIG00000003642) #24	ENSMSIG00000003630	Iqch (ENSMSIG00000002651) #25	2300009A05Rik (ENSMSIG00000002599) #26	Map2k5 (ENSMSIG00000002321) #27	Skor1 (ENSMSIG00000002179) #28	Pias1 (ENSMSIG00000002027) #29	ENSMSIG00000001996 ##30	Cln6 (ENSMSIG00000001974) #32	Fem1b (ENSMSIG00000001951) #33	Itga11 (ENSMSIG00000001884) #34	Coro2b (ENSMSIG00000001799) #35	ENSMSIG00000001693 #36
Mouse	MODERN SPECIES	18	Dpp8 (ENSMUSG00000032393) #7	Hacd3 (ENSMUSG00000033629) #8	Ints14 (ENSMUSG00000034263) #9	Slc24a1 (ENSMUSG00000034452) #10	Dennd4a (ENSMUSG00000053641) #11	Rab11a (ENSMUSG00000004771) #12	Megf11 (ENSMUSG00000036466) #13	Dis3l (ENSMUSG00000032396) #14	Tipin (ENSMUSG00000032397) #15	Uchl4 (ENSMUSG00000035337) ##16	Map2k1 (ENSMUSG00000004936) #17	Snapc5 (ENSMUSG00000032398) #18	Rpl4 (ENSMUSG00000032399) #19	Zwilch (ENSMUSG00000032400) #20	Lctl (ENSMUSG00000032401) #21	Smad6 (ENSMUSG00000036867) #22	Smad3 (ENSMUSG00000032402) #23	Aagab (ENSMUSG00000037257) #24	Iqch (ENSMUSG00000037801) #25	2300009A05Rik (ENSMUSG00000032403) #26	Map2k5 (ENSMUSG00000058444) #27	Skor1 (ENSMUSG00000022245) #28	Pias1 (ENSMUSG00000032405) #29	Calml4 (ENSMUSG00000032246) ##30	Cln6 (ENSMUSG00000032245) #32	Fem1b (ENSMUSG00000032244) #33	Itga11 (ENSMUSG00000032243) #34	Coro2b (ENSMUSG00000041729) #35	Anp32a (ENSMUSG00000032249) #36	Spesp1 (ENSMUSG00000046846) #37	Glce (ENSMUSG00000032252)
Ryukyu mouse	MODERN SPECIES	18	Dpp8 (MGP_CAROLIEiJ_G0032351) #7	Hacd3 (MGP_CAROLIEiJ_G0032350) #8	Ints14 (MGP_CAROLIEiJ_G0032349) #9	Slc24a1 (MGP_CAROLIEiJ_G0032348) #10	Dennd4a (MGP_CAROLIEiJ_G0032347) #11	Rab11a (MGP_CAROLIEiJ_G0032346) #12	Megf11 (MGP_CAROLIEiJ_G0032345) #13	Dis3l (MGP_CAROLIEiJ_G0032344) #14	Tipin (MGP_CAROLIEiJ_G0032343) #15	MGP_CAROLIEiJ_G0032342 ##16	Map2k1 (MGP_CAROLIEiJ_G0032341) #17	Snapc5 (MGP_CAROLIEiJ_G0032340) #18	Rpl4 (MGP_CAROLIEiJ_G0032339) #19	Zwilch (MGP_CAROLIEiJ_G0032338) #20	Lctl (MGP_CAROLIEiJ_G0032337) #21	Smad6 (MGP_CAROLIEiJ_G0032336) #22	Smad3 (MGP_CAROLIEiJ_G0032335) #23	Aagab (MGP_CAROLIEiJ_G0032334) #24	Iqch (MGP_CAROLIEiJ_G0032333) #25	2300009A05Rik (MGP_CAROLIEiJ_G0032332) #26	Map2k5 (MGP_CAROLIEiJ_G0032331) #27	Skor1 (MGP_CAROLIEiJ_G0032330) #28	Pias1 (MGP_CAROLIEiJ_G0032329) #29	Calml4 (MGP_CAROLIEiJ_G0032328) #30	Cln6 (MGP_CAROLIEiJ_G0032327) #32	Fem1b (MGP_CAROLIEiJ_G0032326) #33	Itga11 (MGP_CAROLIEiJ_G0032325) #34	Coro2b (MGP_CAROLIEiJ_G0032324) #35	Anp32a (MGP_CAROLIEiJ_G0032323) #36	Spesp1 (MGP_CAROLIEiJ_G0032322) #37	Glce (MGP_CAROLIEiJ_G0032321)