Percora_a	ANCESTRAL SPECIES	8	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #12	ENSGT00940000154914 #13	ENSGT00940000155333.B #14	ENSGT00530000063106.B #15	ENSGT00390000005764 #16	ENSGT00940000153487.b.b #17	ENSGT00390000010331 #18	ENSGT00390000018145.xc #19	ENSGT00390000013696 #20	ENSGT00940000157369 #21	ENSGT00910000147890	ENSGT00940000158146 #22	ENSGT00940000153499.b.b #23	ENSGT00390000007218 #24	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #28	ENSGT00940000158440 #29	ENSGT01030000234539.a.a.b.a.b #30	ENSGT00940000157859 #31	ENSGT00400000022240 #32	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591
Bovidae	ANCESTRAL SPECIES	7	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #12	ENSGT00940000154914 #13	ENSGT00940000155333.B #14	ENSGT00530000063106.B #15	ENSGT00390000005764 #16	ENSGT00940000153487.b.b #17	ENSGT00390000010331 #18	ENSGT00390000018145.xc #19	ENSGT00390000013696 #20	ENSGT00940000157369 #21	ENSGT00910000147890	ENSGT00940000158146 #22	ENSGT00940000153499.b.b #23	ENSGT00390000007218 #24	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #28	ENSGT00940000158440 #29	ENSGT01030000234539.a.a.b.a.b #30	ENSGT00940000157859 #31	ENSGT00400000022240 #32	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591
Bovinae	ANCESTRAL SPECIES	33	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #12	ENSGT00940000154914.ib #13	ENSGT00940000155333.B #14	ENSGT00530000063106.B #15	ENSGT00390000005764 #16	ENSGT00940000153487.b.b #17	ENSGT00390000010331 #18	ENSGT00390000018145.xc #19	ENSGT00390000013696 #20	ENSGT00940000157369 #21	ENSGT00910000147890	ENSGT00940000158146 #22	ENSGT00940000153499.b.b #23	ENSGT00390000007218 #24	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #28	ENSGT00940000158440 #29	ENSGT01030000234539.a.a.b.a.b #30	ENSGT00940000157859 #31	ENSGT00400000022240 #32	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591
Bos	ANCESTRAL SPECIES	31	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #12	ENSGT00940000154914.ib #13	ENSGT00940000155333.B #14	ENSGT00530000063106.B #15	ENSGT00390000005764 #16	ENSGT00940000153487.b.b #17	ENSGT00390000010331 #18	ENSGT00390000018145.xc.e.a ##19	ENSGT00390000013696 #20	ENSGT00940000157369 #21	ENSGT00910000147890	ENSGT00940000158146 #22	ENSGT00940000153499.b.b #23	ENSGT00390000007218 #24	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #28	ENSGT00940000158440 #29	ENSGT01030000234539.a.a.b.a.b #30	ENSGT00940000157859 #31	ENSGT00400000022240 #32	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591
Bos_a	ANCESTRAL SPECIES	40								ENSGT00940000155333.B #14	ENSGT00530000063106.B #15	ENSGT00390000005764 #16	ENSGT00940000153487.b.b #17	ENSGT00390000010331 #18	ENSGT00390000018145.xc.e.a ##19	ENSGT00390000013696 #20	ENSGT00940000157369 #21	ENSGT00940000158146 #22	ENSGT00940000153499.b.b #23	ENSGT00390000007218 #24	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00960000188521	ENSGT00940000157505 #28	ENSGT00940000158440 #29	ENSGT01030000234539.a.a.b.a.b #30	ENSGT00940000157859 #31	ENSGT00400000022240 #32	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37
Domestic yak	MODERN SPECIES	2	DPP8 (ENSBGRG00000025360) #7	HACD3 (ENSBGRG00000025307) #8	INTS14 (ENSBGRG00000025180) #9	SLC24A1 (ENSBGRG00000025095) #10	ENSBGRG00000025078 #11	DENND4A (ENSBGRG00000024953) #12	ENSBGRG00000024884 #13	MEGF11 (ENSBGRG00000024819) #14	DIS3L (ENSBGRG00000024760) #15	TIPIN (ENSBGRG00000024730) #16	MAP2K1 (ENSBGRG00000024678) #17	SNAPC5 (ENSBGRG00000024649) #18	ENSBGRG00000024489 #19	ZWILCH (ENSBGRG00000024356) #20	LCTL (ENSBGRG00000024229) #21	SMAD6 (ENSBGRG00000024050) #22	SMAD3 (ENSBGRG00000023965) #23	AAGAB (ENSBGRG00000023783) #24	IQCH (ENSBGRG00000023490) #25	ENSBGRG00000023451 #26	ENSBGRG00000023428 #27	MAP2K5 (ENSBGRG00000023013) #28	SKOR1 (ENSBGRG00000022855) #29	PIAS1 (ENSBGRG00000022493) #30	CALML4 (ENSBGRG00000022400) #31	CLN6 (ENSBGRG00000022143) #32	FEM1B (ENSBGRG00000022079) #33	ITGA11 (ENSBGRG00000021881) #34	CORO2B (ENSBGRG00000021747) #35	ENSBGRG00000021463 #36	ENSBGRG00000021382 #37
Wild yak	MODERN SPECIES	552									DIS3L (ENSBMUG00000005883) #15	TIPIN (ENSBMUG00000005904) #16	MAP2K1 (ENSBMUG00000005924) #17	SNAPC5 (ENSBMUG00000005936) #18	ENSBMUG00000005950 ##19	ZWILCH (ENSBMUG00000006013) #20	LCTL (ENSBMUG00000006040) #21	ENSBMUG00000006090 #22	SMAD3 (ENSBMUG00000006115) #23	AAGAB (ENSBMUG00000006202) #24	IQCH (ENSBMUG00000006265) #25	ENSBMUG00000006346	MAP2K5 (ENSBMUG00000006406) #28	SKOR1 (ENSBMUG00000006456) #29	PIAS1 (ENSBMUG00000006486) #30	CALML4 (ENSBMUG00000006499) #31	CLN6 (ENSBMUG00000006571) #32	FEM1B (ENSBMUG00000006589) #33	ITGA11 (ENSBMUG00000006621) #34	CORO2B (ENSBMUG00000006646) #35	ENSBMUG00000006692 #36
Bos_b	ANCESTRAL SPECIES	28	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #12	ENSGT00940000154914.ib #13	ENSGT00940000155333.B #14	ENSGT00530000063106.B #15	ENSGT00390000005764 #16	ENSGT00940000153487.b.b #17	ENSGT00390000010331 #18	ENSGT00390000018145.xc.e.a ##19	ENSGT00390000013696 #20	ENSGT00940000157369 #21	ENSGT00910000147890	ENSGT00940000158146 #22	ENSGT00940000153499.b.b #23	ENSGT00390000007218 #24	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #28	ENSGT00940000158440 #29	ENSGT01030000234539.a.a.b.a.b #30	ENSGT00940000157859 #31	ENSGT00400000022240 #32	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591
Cow	MODERN SPECIES	1	DPP8 (ENSBTAG00000014807) #7	HACD3 (ENSBTAG00000015155) #8	INTS14 (ENSBTAG00000015158) #9	SLC24A1 (ENSBTAG00000025826) #10	DENND4A (ENSBTAG00000017095) #12	RAB11A (ENSBTAG00000018959) #13	MEGF11 (ENSBTAG00000034140) #14	DIS3L (ENSBTAG00000000371) #15	TIPIN (ENSBTAG00000000372) #16	MAP2K1 (ENSBTAG00000033983) #17	SNAPC5 (ENSBTAG00000005210) #18	RPL4 (ENSBTAG00000005211) ##19	ZWILCH (ENSBTAG00000005213) #20	LCTL (ENSBTAG00000005214) #21	ENSBTAG00000050356	SMAD6 (ENSBTAG00000000625) #22	SMAD3 (ENSBTAG00000012599) #23	AAGAB (ENSBTAG00000040368) #24	IQCH (ENSBTAG00000013638) #25	C10H15orf61 (ENSBTAG00000045628) #26	MAP2K5 (ENSBTAG00000000218) #28	PIAS1 (ENSBTAG00000005564) #30	CALML4 (ENSBTAG00000025822) #31	CLN6 (ENSBTAG00000005565) #32	FEM1B (ENSBTAG00000008378) #33	ITGA11 (ENSBTAG00000008380) #34	CORO2B (ENSBTAG00000012681) #35	ANP32A (ENSBTAG00000012365) #36	SPESP1 (ENSBTAG00000005994) #37	NOX5 (ENSBTAG00000009030)	GLCE (ENSBTAG00000001405)
Hybrid Bos Indicus	MODERN SPECIES	1	DPP8 (ENSBIXG00005007925) #7	DENND4A (ENSBIXG00005007862) #12	HACD3 (ENSBIXG00005029324) #8	INTS14 (ENSBIXG00005029402) #9	SLC24A1 (ENSBIXG00005029443) #10	ENSBIXG00005029457 #11	RAB11A (ENSBIXG00005029469) ##13	MEGF11 (ENSBIXG00005029582) #14	DIS3L (ENSBIXG00005029839) #15	TIPIN (ENSBIXG00005029852) #16	ENSBIXG00005029869 #17	SNAPC5 (ENSBIXG00005029881) #18	ENSBIXG00005029889 ##19	ZWILCH (ENSBIXG00005029921) #20	LCTL (ENSBIXG00005029961) #21	SMAD6 (ENSBIXG00005030012) #22	SMAD3 (ENSBIXG00005030065) #23	AAGAB (ENSBIXG00005030085) #24	IQCH (ENSBIXG00005030120) #25	C15orf61 (ENSBIXG00005030179) #26	MAP2K5 (ENSBIXG00005030309) #28	SKOR1 (ENSBIXG00005030471) #29	PIAS1 (ENSBIXG00005030503) #30	CALML4 (ENSBIXG00005030510) #31	ENSBIXG00005030548 #32	FEM1B (ENSBIXG00005030567) #33	ITGA11 (ENSBIXG00005030585) #34	CORO2B (ENSBIXG00005030625) #35	ENSBIXG00005030667 #36	SPESP1 (ENSBIXG00005030688) #37	NOX5 (ENSBIXG00005030704)
American bison	MODERN SPECIES	2972	IGDCC4 (ENSBBBG00000009376)	DPP8 (ENSBBBG00000001480) #7	HACD3 (ENSBBBG00000009384) #8	INTS14 (ENSBBBG00000001482) #9	SLC24A1 (ENSBBBG00000009385) #10	DENND4A (ENSBBBG00000009388) #12	ENSBBBG00000001484 #13	MEGF11 (ENSBBBG00000009393) #14	DIS3L (ENSBBBG00000001485) #15	ENSBBBG00000009401	MAP2K1 (ENSBBBG00000009402) #17	SNAPC5 (ENSBBBG00000009405) #18	RPL4 (ENSBBBG00000009410) #19	ZWILCH (ENSBBBG00000007486) #20	LCTL (ENSBBBG00000009415) #21	SMAD6 (ENSBBBG00000001493) #22	SMAD3 (ENSBBBG00000009419) #23	AAGAB (ENSBBBG00000009422) #24	IQCH (ENSBBBG00000009426) #25	C15orf61 (ENSBBBG00000009428) #26	MAP2K5 (ENSBBBG00000009430) #28	PIAS1 (ENSBBBG00000009435) #30	CALML4 (ENSBBBG00000009437) #31	CLN6 (ENSBBBG00000001505) #32	FEM1B (ENSBBBG00000009440) #33	ITGA11 (ENSBBBG00000009443) #34	CORO2B (ENSBBBG00000009445) #35	ENSBBBG00000009447 #36	SPESP1 (ENSBBBG00000001512) #37	NOX5 (ENSBBBG00000009452)	GLCE (ENSBBBG00000009453)
Caprinae	ANCESTRAL SPECIES	30	ENSGT00940000159637	ENSGT00940000160717 #7	ENSGT00530000062962.b.a #8	ENSGT00390000009486 #9	ENSGT01030000234532.B.e.b #10	ENSGT00940000155836.B #12	ENSGT00940000154914 #13	ENSGT00940000155333.B #14	ENSGT00530000063106.B #15	ENSGT00390000005764.o #16	ENSGT00940000153487.b.b #17	ENSGT00390000010331 #18	ENSGT00390000018145.xc #19	ENSGT00390000013696 #20	ENSGT00940000157369 #21	ENSGT00940000158146 #22	ENSGT00940000153499.b.b #23	ENSGT00390000007218 #24	ENSGT00390000008908 #25	ENSGT00390000015942 #26	ENSGT00940000157505 #28	ENSGT00940000158440 #29	ENSGT01030000234539.a.a.b.a.b #30	ENSGT00940000157859 #31	ENSGT00400000022240 #32	ENSGT00940000161115 #33	ENSGT00940000155465 #34	ENSGT00940000158689 #35	ENSGT00950000182907.a.b.b.b #36	ENSGT00390000005362 #37	ENSGT00940000162591
Rambouillet Sheep	MODERN SPECIES	23	IGDCC4 (ENSOARG00020005613)	DPP8 (ENSOARG00020005690) #7	HACD3 (ENSOARG00020005830) #8	INTS14 (ENSOARG00020006021) #9	SLC24A1 (ENSOARG00020006188) #10	DENND4A (ENSOARG00020006221) #12	ENSOARG00020006812 #13	MEGF11 (ENSOARG00020006928) #14	DIS3L (ENSOARG00020007756) #15	TIPIN (ENSOARG00020007825) #16	MAP2K1 (ENSOARG00020007890) #17	SNAPC5 (ENSOARG00020007973) #18	RPL4 (ENSOARG00020008040) #19	ZWILCH (ENSOARG00020008203) #20	LCTL (ENSOARG00020008384) #21	SMAD6 (ENSOARG00020008552) #22	SMAD3 (ENSOARG00020008589) #23	ENSOARG00020008703 #24	IQCH (ENSOARG00020008820) #25	C15orf61 (ENSOARG00020009584) #26	MAP2K5 (ENSOARG00020009665) #28	SKOR1 (ENSOARG00020010969) #29	PIAS1 (ENSOARG00020011172) #30	CALML4 (ENSOARG00020011634) #31	CLN6 (ENSOARG00020011715) #32	FEM1B (ENSOARG00020011984) #33	ITGA11 (ENSOARG00020012015) #34	CORO2B (ENSOARG00020012576) #35	ENSOARG00020012822 #36	SPESP1 (ENSOARG00020012911) #37	NOX5 (ENSOARG00020012967)
Goat	MODERN SPECIES	1	HACD3 (ENSCHIG00000020855) #8	INTS14 (ENSCHIG00000012971) #9	SLC24A1 (ENSCHIG00000023644) #10	ENSCHIG00000015128	DENND4A (ENSCHIG00000024015) #12	ENSCHIG00000012183 #13	ENSCHIG00000006809	MEGF11 (ENSCHIG00000023140) #14	DIS3L (ENSCHIG00000009744) #15	ENSCHIG00000000481 #16	MAP2K1 (ENSCHIG00000021340) #17	SNAPC5 (ENSCHIG00000011315) #18	RPL4 (ENSCHIG00000012421) #19	ZWILCH (ENSCHIG00000015830) #20	LCTL (ENSCHIG00000017181) #21	SMAD6 (ENSCHIG00000012651) #22	SMAD3 (ENSCHIG00000013774) #23	ENSCHIG00000015028 #24	IQCH (ENSCHIG00000009034) #25	C15orf61 (ENSCHIG00000026630) #26	MAP2K5 (ENSCHIG00000022039) #28	SKOR1 (ENSCHIG00000017580) #29	ENSCHIG00000010951	ENSCHIG00000003884	PIAS1 (ENSCHIG00000014001) #30	CALML4 (ENSCHIG00000005207) #31	CLN6 (ENSCHIG00000024128) #32	FEM1B (ENSCHIG00000023393) #33	ITGA11 (ENSCHIG00000025296) #34	CORO2B (ENSCHIG00000023253) #35	ENSCHIG00000011806 #36
Siberian musk deer	MODERN SPECIES	70	ENSMMSG00000000445	HACD3 (ENSMMSG00000000485) #8	INTS14 (ENSMMSG00000000581) #9	SLC24A1 (ENSMMSG00000000735) #10	ENSMMSG00000000783	DENND4A (ENSMMSG00000000845) #12	ENSMMSG00000000971 #13	MEGF11 (ENSMMSG00000001023) #14	DIS3L (ENSMMSG00000001148) #15	TIPIN (ENSMMSG00000001178) #16	MAP2K1 (ENSMMSG00000001210) #17	SNAPC5 (ENSMMSG00000001249) #18	ENSMMSG00000001277 ##19	ZWILCH (ENSMMSG00000001358) #20	LCTL (ENSMMSG00000001442) #21	SMAD6 (ENSMMSG00000001473) #22	SMAD3 (ENSMMSG00000001493) #23	AAGAB (ENSMMSG00000001517) #24	IQCH (ENSMMSG00000001575) #25	C15orf61 (ENSMMSG00000001796) #26	MAP2K5 (ENSMMSG00000001850) #28	SKOR1 (ENSMMSG00000002112) #29	PIAS1 (ENSMMSG00000002174) #30	CALML4 (ENSMMSG00000002206) #31	CLN6 (ENSMMSG00000002230) #32	FEM1B (ENSMMSG00000002327) #33	ITGA11 (ENSMMSG00000002350) #34	CORO2B (ENSMMSG00000002385) #35	ENSMMSG00000002437	ENSMMSG00000002461 #36	ENSMMSG00000002508