Laurasiatheria	ANCESTRAL SPECIES	23	ENSGT00950000183074.A #9	ENSGT00940000157209.jb	ENSGT00530000063668.A #10	ENSGT00390000014786 #11	ENSGT00390000014290 #12	ENSGT00940000154920 #13	ENSGT00950000183154.b.a.b #14	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a #18	ENSGT00940000156313 #19	ENSGT00940000154982 #20	ENSGT00940000153607.c.a #21	ENSGT00940000153607.c.b ##21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #24	ENSGT00940000158052.a #25	ENSGT00940000157047 #26	ENSGT00530000063698.a.b	ENSGT00940000158264.a #27	ENSGT00940000158929 #28	ENSGT00940000157124 #29	ENSGT00940000161019	ENSGT00940000155020 #31	ENSGT00940000159325 #32	ENSGT00950000182982.A #33	ENSGT00390000017580 #34	ENSGT00940000154742.a #35
Laurasiatheria_a	ANCESTRAL SPECIES	13	ENSGT00950000183074.A #9	ENSGT00940000157209.jb	ENSGT00530000063668.A #10	ENSGT00390000014786 #11	ENSGT00390000014290 #12	ENSGT00940000154920 #13	ENSGT00950000183154.b.a.b #14	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a #18	ENSGT00940000156313 #19	ENSGT00940000154982 #20	ENSGT00940000153607.c.a.d #21	ENSGT00940000153607.c.b ##21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #24	ENSGT00940000158052.a #25	ENSGT00940000157047 #26	ENSGT00530000063698.a.b	ENSGT00940000158264.a #27	ENSGT00940000158929 #28	ENSGT00940000157124 #29	ENSGT00940000161019	ENSGT00940000155020 #31	ENSGT00940000159325 #32	ENSGT00950000182982.A #33	ENSGT00390000017580 #34	ENSGT00940000154742.a #35
Artiodactyla	ANCESTRAL SPECIES	17	ENSGT00950000183074.A #9	ENSGT00940000157209.jb	ENSGT00530000063668.A #10	ENSGT00390000014786 #11	ENSGT00390000014290 #12	ENSGT00940000154920 #13	ENSGT00950000183154.b.a.b #14	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a #18	ENSGT00940000156313 #19	ENSGT00940000154982 #20	ENSGT00940000153607.c.a.d #21	ENSGT00940000153607.c.b ##21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #24	ENSGT00940000158052.a #25	ENSGT00940000157047 #26	ENSGT00530000063698.a.b	ENSGT00940000158264.a #27	ENSGT00940000158929 #28	ENSGT00940000157124 #29	ENSGT00940000161019	ENSGT00940000155020 #31	ENSGT00940000159325 #32	ENSGT00950000182982.A #33	ENSGT00390000017580 #34	ENSGT00940000154742.a #35
Artiodactyla_a	ANCESTRAL SPECIES	17	ENSGT00950000183074.A #9	ENSGT00940000157209.jb	ENSGT00530000063668.A #10	ENSGT00390000014786 #11	ENSGT00390000014290 #12	ENSGT00940000154920 #13	ENSGT00950000183154.b.a.b #14	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a #18	ENSGT00940000156313 #19	ENSGT00940000154982 #20	ENSGT00940000153607.c.a.d #21	ENSGT00940000153607.c.b ##21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #24	ENSGT00940000158052.a #25	ENSGT00940000157047 #26	ENSGT00530000063698.a.b	ENSGT00940000158264.a #27	ENSGT00940000158929 #28	ENSGT00940000157124 #29	ENSGT00940000161019	ENSGT00940000155020 #31	ENSGT00940000159325 #32	ENSGT00950000182982.A #33	ENSGT00390000017580 #34	ENSGT00940000154742.a #35
Camelidae	ANCESTRAL SPECIES	84			ENSGT00940000157209.jb	ENSGT00530000063668.A #10	ENSGT00390000014786 #11	ENSGT00390000014290 #12	ENSGT00940000154920 #13	ENSGT00950000183154.b.a.b #14	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a #18	ENSGT00940000156313 #19	ENSGT00940000154982 #20	ENSGT00940000153607.c.a.d #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #24	ENSGT00940000158052.a #25	ENSGT00940000157047 #26	ENSGT00530000063698.a.b	ENSGT00940000158264.a #27	ENSGT00940000158929 #28	ENSGT00940000157124 #29	ENSGT00940000164030 #30	ENSGT00940000155020 #31	ENSGT00940000159325 #32	ENSGT00950000182982.A #33	ENSGT00390000017580 #34	ENSGT00940000154742.a #35	ENSGT00390000007058 #36
Arabian camel	MODERN SPECIES	16	USP14 (ENSCDRG00005020182) #7	THOC1 (ENSCDRG00005020293) #8	COLEC12 (ENSCDRG00005020320) #9	CLUL1 (ENSCDRG00005020348) #10	ENSCDRG00005020370 #11	ENOSF1 (ENSCDRG00005020452) #12	YES1 (ENSCDRG00005020509) #13	ADCYAP1 (ENSCDRG00005020536) #14	METTL4 (ENSCDRG00005020546) #15	NDC80 (ENSCDRG00005008870) #16	SMCHD1 (ENSCDRG00005009045) #17	EMILIN2 (ENSCDRG00005009377) #18	LPIN2 (ENSCDRG00005009560) #19	MYOM1 (ENSCDRG00005009826) #20	MYL12A (ENSCDRG00005010206) #21	TGIF1 (ENSCDRG00005010359) #22	DLGAP1 (ENSCDRG00005010492) #23	AKAIN1 (ENSCDRG00005012508) #24	ZBTB14 (ENSCDRG00005012548) #25	EPB41L3 (ENSCDRG00005012623) #26	L3MBTL4 (ENSCDRG00005013404) #27	ARHGAP28 (ENSCDRG00005013537) #28	LAMA1 (ENSCDRG00005013670) #29	ENSCDRG00005014205 #30	PTPRM (ENSCDRG00005014275) #31	RAB12 (ENSCDRG00005015408) #32	MTCL1 (ENSCDRG00005015473) #33	NDUFV2 (ENSCDRG00005015516) #34	ANKRD12 (ENSCDRG00005015595) #35	TWSG1 (ENSCDRG00005015713) #36	RALBP1 (ENSCDRG00005015768) #37
Alpaca	MODERN SPECIES	3255												LPIN2 (ENSVPAG00000001900) #19	MYOM1 (ENSVPAG00000001904) #20	ENSVPAG00000001908 #21	MYL12A (ENSVPAG00000001909) #21	ENSVPAG00000001910 #22	ENSVPAG00000001911 #23
Artiodactyla_b	ANCESTRAL SPECIES	10	ENSGT00950000183074.A #9	ENSGT00940000157209.jb	ENSGT00530000063668.A #10	ENSGT00390000014786 #11	ENSGT00390000014290 #12	ENSGT00940000154920 #13	ENSGT00950000183154.b.a.b #14	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a #18	ENSGT00940000156313 #19	ENSGT00940000154982 #20	ENSGT00940000153607.c.a.d #21	ENSGT00940000153607.c.b ##21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #24	ENSGT00940000158052.a #25	ENSGT00940000157047 #26	ENSGT00530000063698.a.b	ENSGT00940000158264.a #27	ENSGT00940000158929 #28	ENSGT00940000157124 #29	ENSGT00940000161019	ENSGT00940000155020 #31	ENSGT00940000159325 #32	ENSGT00950000182982.A #33	ENSGT00390000017580 #34	ENSGT00940000154742.a #35
Cetacea	ANCESTRAL SPECIES	11	ENSGT00950000183074.A #9	ENSGT00940000157209.jb	ENSGT00530000063668.A #10	ENSGT00390000014786 #11	ENSGT00390000014290 #12	ENSGT00940000154920 #13	ENSGT00950000183154.b.a.b #14	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a #18	ENSGT00940000156313 #19	ENSGT00940000154982 #20	ENSGT00940000153607.c.a.d #21	ENSGT00940000153607.c.b ##21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT01010000224919	ENSGT00940000158052.a #25	ENSGT00940000157047 #26	ENSGT00530000063698.a.b	ENSGT00940000158264.a #27	ENSGT00940000158929 #28	ENSGT00940000157124 #29	ENSGT00940000161019	ENSGT00940000155020 #31	ENSGT00940000159325 #32	ENSGT00390000016972.a.a.b.b.a	ENSGT00950000182982.A #33	ENSGT00390000017580.bb #34	ENSGT00940000154742.a #35
Odontoceti	ANCESTRAL SPECIES	10	ENSGT00940000157209.jb	ENSGT00530000063668.A #10	ENSGT00390000014786 #11	ENSGT00390000014290 #12	ENSGT00940000154920 #13	ENSGT00950000183154.b.a.b #14	ENSGT00390000001347.v.o.b.b	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a #18	ENSGT00940000156313 #19	ENSGT00940000154982 #20	ENSGT00940000153607.c.a.d #21	ENSGT00940000153607.c.b ##21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT01010000224919	ENSGT00550000074618.a.b.`b	ENSGT00560000078638 #24	ENSGT00940000162721	ENSGT00940000158052.a #25	ENSGT00940000157047 #26	ENSGT00530000063698.a.b	ENSGT00940000158264.a #27	ENSGT00940000158929 #28	ENSGT00940000157124 #29	ENSGT00940000161019	ENSGT00940000155020 #31	ENSGT00940000159325 #32	ENSGT00390000016972.a.a.b.b.a
Odontoceti_a	ANCESTRAL SPECIES	9	ENSGT00940000157209.jb	ENSGT00530000063668.A #10	ENSGT00390000014786 #11	ENSGT00390000014290 #12	ENSGT00940000154920 #13	ENSGT00950000183154.b.a.b #14	ENSGT00390000001347.v.o.b.b	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a #18	ENSGT00940000156313 #19	ENSGT00940000154982 #20	ENSGT00940000153607.c.a.d #21	ENSGT00940000153607.c.b ##21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT01010000224919	ENSGT00560000078638 #24	ENSGT00940000162721	ENSGT00940000158052.a #25	ENSGT00940000157047 #26	ENSGT00530000063698.a.b	ENSGT00940000158264.a #27	ENSGT00940000158929 #28	ENSGT00940000157124 #29	ENSGT00940000164030 #30	ENSGT00940000155020 #31	ENSGT00940000159325 #32	ENSGT00950000182982.A #33	ENSGT00390000017580.bb #34
Dolphin	MODERN SPECIES	3139							METTL4 (ENSTTRG00000008249) #15	NDC80 (ENSTTRG00000008256) #16	ENSTTRG00000008267 #17	ENSTTRG00000008276 #17	EMILIN2 (ENSTTRG00000008298) #18	LPIN2 (ENSTTRG00000008304) #19	MYOM1 (ENSTTRG00000008310) #20	MYL12A (ENSTTRG00000008319) #21	MYL12B (ENSTTRG00000008322) ##21	TGIF1 (ENSTTRG00000008324) #22
Odontoceti_b	ANCESTRAL SPECIES	10	ENSGT00950000183074.A #9	ENSGT00940000157209.jb	ENSGT00530000063668.A #10	ENSGT00390000014786 #11	ENSGT00390000014290 #12	ENSGT00940000154920 #13	ENSGT00950000183154.b.a.b #14	ENSGT00390000001347.v.o.b.b	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a #18	ENSGT00940000156313 #19	ENSGT00940000154982 #20	ENSGT00940000153607.c.a.d #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT01010000224919	ENSGT00560000078638 #24	ENSGT00940000162721	ENSGT00940000158052.a #25	ENSGT00940000157047 #26	ENSGT00530000063698.a.b	ENSGT00940000158264.a #27	ENSGT00940000158929 #28	ENSGT00940000157124 #29	ENSGT01090000260119.g	ENSGT00940000161019	ENSGT00940000155020 #31	ENSGT00940000159325 #32	ENSGT00950000182982.A #33
Monodontidae	ANCESTRAL SPECIES	8	ENSGT00950000183074.A #9	ENSGT00940000157209.jb	ENSGT00530000063668.A #10	ENSGT00390000014786 #11	ENSGT00390000014290 #12	ENSGT00940000154920 #13	ENSGT00950000183154.b.a.b #14	ENSGT00390000001347.v.o.b.b	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a #18	ENSGT00940000156313 #19	ENSGT00940000154982 #20	ENSGT00940000153607.c.a.d #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT01010000224919	ENSGT00940000162721	ENSGT00940000158052.a #25	ENSGT00940000157047 #26	ENSGT00530000063698.a.b	ENSGT00940000158264.a #27	ENSGT00940000158929 #28	ENSGT00940000157124 #29	ENSGT01090000260119.g	ENSGT00940000161019	ENSGT00940000155020 #31	ENSGT00940000159325 #32	ENSGT00950000182982.A #33	ENSGT00950000182891.a.a.b.a.b.a.i
Narwhal	MODERN SPECIES	295	CETN1 (ENSMMNG00015003008)	ENSMMNG00015003019	CLUL1 (ENSMMNG00015003042) #10	TYMS (ENSMMNG00015003074) #11	ENOSF1 (ENSMMNG00015003115) #12	YES1 (ENSMMNG00015003176) #13	ADCYAP1 (ENSMMNG00015003197) #14	ENSMMNG00015003209	METTL4 (ENSMMNG00015003242) #15	NDC80 (ENSMMNG00015003275) #16	SMCHD1 (ENSMMNG00015003318) #17	EMILIN2 (ENSMMNG00015003399) #18	LPIN2 (ENSMMNG00015003446) #19	MYOM1 (ENSMMNG00015003548) #20	MYL12A (ENSMMNG00015003634) #21	TGIF1 (ENSMMNG00015003660) #22	DLGAP1 (ENSMMNG00015003747) #23	ENSMMNG00015003903	ENSMMNG00015003912	ENSMMNG00015003932	ENSMMNG00015003955	ENSMMNG00015003965	ZBTB14 (ENSMMNG00015003972) #25	EPB41L3 (ENSMMNG00015004048) #26	TMEM200C (ENSMMNG00015004206)	L3MBTL4 (ENSMMNG00015004217) #27	ARHGAP28 (ENSMMNG00015004258) #28	LAMA1 (ENSMMNG00015004339) #29	ENSMMNG00015004377	LRRC30 (ENSMMNG00015004392)	PTPRM (ENSMMNG00015004419) #31
Beluga whale	MODERN SPECIES	60									METTL4 (ENSDLEG00000015259) #15	NDC80 (ENSDLEG00000015314) #16	SMCHD1 (ENSDLEG00000015395) #17	EMILIN2 (ENSDLEG00000015862) #18	LPIN2 (ENSDLEG00000015907) #19	MYOM1 (ENSDLEG00000016123) #20	MYL12B (ENSDLEG00000016178) #21	TGIF1 (ENSDLEG00000016192) #22	DLGAP1 (ENSDLEG00000016208) #23	ENSDLEG00000016252	ENSDLEG00000016260	ENSDLEG00000016274	ENSDLEG00000016292	ZBTB14 (ENSDLEG00000016304) #25	EPB41L3 (ENSDLEG00000016342) #26	L3MBTL4 (ENSDLEG00000016582) #27	ARHGAP28 (ENSDLEG00000016628) #28	LAMA1 (ENSDLEG00000016968) #29	ENSDLEG00000018830	LRRC30 (ENSDLEG00000018835) #30	PTPRM (ENSDLEG00000018839) #31	RAB12 (ENSDLEG00000018863) #32	MTCL1 (ENSDLEG00000018871) #33
Vaquita	MODERN SPECIES	5	CLUL1 (ENSPSNG00000012188) #10	TYMS (ENSPSNG00000012361) #11	ENOSF1 (ENSPSNG00000012510) #12	YES1 (ENSPSNG00000009957) #13	ADCYAP1 (ENSPSNG00000010057) #14	ENSPSNG00000010128	METTL4 (ENSPSNG00000010163) #15	NDC80 (ENSPSNG00000010241) #16	SMCHD1 (ENSPSNG00000010317) #17	EMILIN2 (ENSPSNG00000010385) #18	LPIN2 (ENSPSNG00000010441) #19	MYOM1 (ENSPSNG00000010586) #20	ENSPSNG00000010695	MYL12A (ENSPSNG00000010765) #21	ENSPSNG00000010881	TGIF1 (ENSPSNG00000010898) #22	DLGAP1 (ENSPSNG00000011076) #23	ENSPSNG00000012311	ENSPSNG00000012349	ENSPSNG00000012382	ENSPSNG00000012425	AKAIN1 (ENSPSNG00000012463) #24	ENSPSNG00000012501	ZBTB14 (ENSPSNG00000012511) #25	EPB41L3 (ENSPSNG00000012785) #26	TMEM200C (ENSPSNG00000014585)	L3MBTL4 (ENSPSNG00000014623) #27	ARHGAP28 (ENSPSNG00000015095) #28	LAMA1 (ENSPSNG00000016083) #29	ENSPSNG00000016720	LRRC30 (ENSPSNG00000016795)
Sperm whale	MODERN SPECIES	10	CETN1 (ENSPCTG00005018754)	CLUL1 (ENSPCTG00005018544) #10	TYMS (ENSPCTG00005018401) #11	ENOSF1 (ENSPCTG00005017789) #12	YES1 (ENSPCTG00005017702) #13	ADCYAP1 (ENSPCTG00005017646) #14	ENSPCTG00005017589	ENSPCTG00005017559	METTL4 (ENSPCTG00005017412) #15	NDC80 (ENSPCTG00005017125) #16	SMCHD1 (ENSPCTG00005016939) #17	EMILIN2 (ENSPCTG00005016847) #18	LPIN2 (ENSPCTG00005016430) #19	MYOM1 (ENSPCTG00005016147) #20	MYL12A (ENSPCTG00005015983) #21	TGIF1 (ENSPCTG00005015886) #22	DLGAP1 (ENSPCTG00005014046) #23	ENSPCTG00005013911	ENSPCTG00005013869	AKAIN1 (ENSPCTG00005013812) #24	ENSPCTG00005013791	ZBTB14 (ENSPCTG00005013701) #25	EPB41L3 (ENSPCTG00005013615) #26	TMEM200C (ENSPCTG00005013590)	L3MBTL4 (ENSPCTG00005012962) #27	ARHGAP28 (ENSPCTG00005012161) #28	LAMA1 (ENSPCTG00005010960) #29	LRRC30 (ENSPCTG00005010734)	ENSPCTG00005010629	PTPRM (ENSPCTG00005009359) #31	RAB12 (ENSPCTG00005009191) #32
Blue whale	MODERN SPECIES	5	CETN1 (ENSBMSG00010012744)	ENSBMSG00010012735	CLUL1 (ENSBMSG00010012683) #10	ENSBMSG00010012644 #11	ENOSF1 (ENSBMSG00010012605) #12	YES1 (ENSBMSG00010012578) #13	ADCYAP1 (ENSBMSG00010012565) #14	METTL4 (ENSBMSG00010012557) #15	NDC80 (ENSBMSG00010012545) #16	SMCHD1 (ENSBMSG00010012525) #17	EMILIN2 (ENSBMSG00010012492) #18	LPIN2 (ENSBMSG00010012467) #19	ENSBMSG00010012448	MYOM1 (ENSBMSG00010012336) #20	MYL12A (ENSBMSG00010012284) #21	TGIF1 (ENSBMSG00010012268) #22	ENSBMSG00010012252	DLGAP1 (ENSBMSG00010012009) #23	ENSBMSG00010011936	ENSBMSG00010011932	ENSBMSG00010011908	ENSBMSG00010011894	AKAIN1 (ENSBMSG00010011889) #24	ENSBMSG00010011884	EPB41L3 (ENSBMSG00010011724) #26	TMEM200C (ENSBMSG00010011652)	L3MBTL4 (ENSBMSG00010011632) #27	ARHGAP28 (ENSBMSG00010011506) #28	ENSBMSG00010011459	LAMA1 (ENSBMSG00010011398) #29	LRRC30 (ENSBMSG00010011359)
Pecora	ANCESTRAL SPECIES	26	ENSGT00950000183074.A #9	ENSGT00940000157209.jb	ENSGT00530000063668.A #10	ENSGT00390000014786 #11	ENSGT00390000014290 #12	ENSGT00940000154920 #13	ENSGT00950000183154.b.a.b #14	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a #18	ENSGT00940000156313 #19	ENSGT00940000154982 #20	ENSGT00940000153607.c.a.d #21	ENSGT00940000153607.c.b ##21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #24	ENSGT00940000158052.a #25	ENSGT00940000157047 #26	ENSGT00530000063698.a.b	ENSGT00940000158929 #28	ENSGT00940000157124 #29	ENSGT00940000161019	ENSGT00940000155020 #31	ENSGT00940000159325 #32	ENSGT00950000182982.A #33	ENSGT00390000017580 #34	ENSGT00940000154742.a #35	ENSGT00390000007058 #36
Percora_a	ANCESTRAL SPECIES	28	ENSGT00950000183074.A #9	ENSGT00940000157209.jb	ENSGT00530000063668.A #10	ENSGT00390000014786 #11	ENSGT00390000014290 #12	ENSGT00940000154920 #13	ENSGT00950000183154.b.a.b #14	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a #18	ENSGT00940000156313 #19	ENSGT00940000154982 #20	ENSGT00940000153607.c.a.d #21	ENSGT00940000153607.c.b ##21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #24	ENSGT00940000158052.a #25	ENSGT00940000157047 #26	ENSGT00530000063698.a.b	ENSGT00940000158929 #28	ENSGT00940000157124 #29	ENSGT00940000161019	ENSGT00940000155020 #31	ENSGT00940000159325 #32	ENSGT00950000182982.A #33	ENSGT00390000017580 #34	ENSGT00940000154742.a #35	ENSGT00390000007058 #36
Bovidae	ANCESTRAL SPECIES	28	ENSGT00950000183074.A #9	ENSGT00940000157209.jb	ENSGT00530000063668.A #10	ENSGT00390000014786 #11	ENSGT00390000014290 #12	ENSGT00940000154920 #13	ENSGT00950000183154.b.a.b #14	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a #18	ENSGT00940000156313 #19	ENSGT00940000154982 #20	ENSGT00940000153607.c.a.d #21	ENSGT00940000153607.c.b ##21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #24	ENSGT00940000158052.a #25	ENSGT00940000157047 #26	ENSGT00530000063698.a.b	ENSGT00940000158929 #28	ENSGT00940000157124 #29	ENSGT00940000161019	ENSGT00940000155020 #31	ENSGT00940000159325 #32	ENSGT00950000182982.A #33	ENSGT00390000017580.fb.a #34	ENSGT00940000154742.a #35	ENSGT00390000007058 #36
Bovinae	ANCESTRAL SPECIES	28	ENSGT00950000183074.A #9	ENSGT00940000157209.jb	ENSGT00530000063668.A #10	ENSGT00390000014786 #11	ENSGT00390000014290 #12	ENSGT00940000154920 #13	ENSGT00950000183154.b.a.b #14	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a #18	ENSGT00940000156313 #19	ENSGT00940000154982 #20	ENSGT00940000153607.c.a.d #21	ENSGT00940000153607.c.b ##21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220.i #23	ENSGT00560000078638 #24	ENSGT00940000158052.a #25	ENSGT00940000157047 #26	ENSGT00530000063698.a.b	ENSGT00940000158929 #28	ENSGT00940000157124 #29	ENSGT00940000161019	ENSGT00940000155020 #31	ENSGT00940000159325 #32	ENSGT00950000182982.A #33	ENSGT00390000017580.fb.a #34	ENSGT00940000154742.a #35	ENSGT00390000007058 #36
Bos	ANCESTRAL SPECIES	29	ENSGT00950000183074.A #9	ENSGT00940000157209.jb	ENSGT00530000063668.A #10	ENSGT00390000014786.s #11	ENSGT00390000014290 #12	ENSGT00940000154920 #13	ENSGT00950000183154.b.a.b #14	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a #18	ENSGT00940000156313 #19	ENSGT00940000154982 #20	ENSGT00940000153607.c.a.d #21	ENSGT00940000153607.c.b ##21	ENSGT00940000155230 #22	ENSGT00940000156220.i #23	ENSGT00560000078638 #24	ENSGT00940000158052.a #25	ENSGT00940000157047 #26	ENSGT00530000063698.a.b	ENSGT00940000158929 #28	ENSGT00940000157124 #29	ENSGT00940000161019	ENSGT00940000155020 #31	ENSGT01100000263481.n.a.a.a.b.a.a.a.a.b.a.b.b.a.b.b	ENSGT00940000159325 #32	ENSGT00950000182982.A #33	ENSGT00390000017580.fb.a #34	ENSGT00940000154742.a #35	ENSGT00390000007058 #36
Bos_a	ANCESTRAL SPECIES	28	ENSGT00390000016232 #8	ENSGT00950000183074.A #9	ENSGT00940000157209.jb	ENSGT00530000063668.A #10	ENSGT00390000014786.s #11	ENSGT00390000014290 #12	ENSGT00940000154920 #13	ENSGT00950000183154.b.a.b #14	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a #18	ENSGT00940000156313 #19	ENSGT00940000154982 #20	ENSGT00940000153607.c.a.d #21	ENSGT00940000155230 #22	ENSGT00940000156220.i #23	ENSGT01050000245099	ENSGT00560000078638 #24	ENSGT00940000158052.a #25	ENSGT00940000157047 #26	ENSGT00940000158929 #28	ENSGT00940000157124 #29	ENSGT00940000161019	ENSGT00940000155020.q #31	ENSGT01100000263481.n.a.a.a.b.a.a.a.a.b.a.b.b.a.b.b	ENSGT00940000159325 #32	ENSGT00950000182982.A #33	ENSGT00390000017580.fb.a #34	ENSGT00940000154742.a #35	ENSGT00390000007058 #36
Wild yak	MODERN SPECIES	583									METTL4 (ENSBMUG00000001809) #15	NDC80 (ENSBMUG00000001772) #16	SMCHD1 (ENSBMUG00000001733) #17	EMILIN2 (ENSBMUG00000001647) #18	LPIN2 (ENSBMUG00000001563) #19	MYOM1 (ENSBMUG00000001469) #20	MYL12A (ENSBMUG00000001371) #21	TGIF1 (ENSBMUG00000001305) #22	DLGAP1 (ENSBMUG00000001028) #23
Domestic yak	MODERN SPECIES	13	CETN1 (ENSBGRG00000019384)	CLUL1 (ENSBGRG00000019406) #10	ENSBGRG00000019538 #11	ENOSF1 (ENSBGRG00000019894) #12	YES1 (ENSBGRG00000020429) #13	ADCYAP1 (ENSBGRG00000020763) #14	METTL4 (ENSBGRG00000020859) #15	NDC80 (ENSBGRG00000021015) #16	SMCHD1 (ENSBGRG00000021081) #17	ENSBGRG00000021468	EMILIN2 (ENSBGRG00000021481) #18	LPIN2 (ENSBGRG00000021549) #19	MYOM1 (ENSBGRG00000022019) #20	MYL12A (ENSBGRG00000022681) #21	ENSBGRG00000022793	TGIF1 (ENSBGRG00000022806) #22	DLGAP1 (ENSBGRG00000022857) #23	ENSBGRG00000023385	ZBTB14 (ENSBGRG00000023412) #25	EPB41L3 (ENSBGRG00000023492) #26	ENSBGRG00000023895	ARHGAP28 (ENSBGRG00000023924) #28	LAMA1 (ENSBGRG00000024286) #29	LRRC30 (ENSBGRG00000024420)	PTPRM (ENSBGRG00000024466) #31	ENSBGRG00000024579	RAB12 (ENSBGRG00000024618) #32	MTCL1 (ENSBGRG00000024711) #33	NDUFV2 (ENSBGRG00000024870) #34	ANKRD12 (ENSBGRG00000024894) #35	TWSG1 (ENSBGRG00000024927) #36
Bos_b	ANCESTRAL SPECIES	34	ENSGT00950000183074.A #9	ENSGT00940000157209.jb	ENSGT00530000063668.A #10	ENSGT00390000014786.s #11	ENSGT00390000014290 #12	ENSGT00940000154920 #13	ENSGT00950000183154.b.a.b #14	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a #18	ENSGT00940000156313 #19	ENSGT00940000154982 #20	ENSGT00940000153607.c.a.d #21	ENSGT00940000153607.c.b ##21	ENSGT00940000155230 #22	ENSGT00940000156220.i #23	ENSGT00560000078638 #24	ENSGT00940000158052.a #25	ENSGT00940000157047 #26	ENSGT00530000063698.a.b	ENSGT00940000158929 #28	ENSGT00940000157124 #29	ENSGT00940000155020 #31	ENSGT01100000263481.n.a.a.a.b.a.a.a.a.b.a.b.b.a.b.b	ENSGT00940000159325 #32	ENSGT00950000182982.A #33	ENSGT00390000017580.fb.a #34	ENSGT00940000154742.a #35	ENSGT00390000007058 #36	ENSGT00940000154639 #37
Hybrid Bos Indicus	MODERN SPECIES	16	CETN1 (ENSBIXG00005001842)	CLUL1 (ENSBIXG00005014105) #10	TYMS (ENSBIXG00005001829) #11	ENOSF1 (ENSBIXG00005014007) #12	YES1 (ENSBIXG00005013763) #13	ADCYAP1 (ENSBIXG00005013724) #14	ENSBIXG00005013699	METTL4 (ENSBIXG00005013634) #15	NDC80 (ENSBIXG00005007711) #16	SMCHD1 (ENSBIXG00005013581) #17	EMILIN2 (ENSBIXG00005013554) #18	LPIN2 (ENSBIXG00005013528) #19	MYOM1 (ENSBIXG00005013491) #20	MYL12A (ENSBIXG00005013437) #21	MYL12B (ENSBIXG00005007006) ##21	TGIF1 (ENSBIXG00005006727) #22	DLGAP1 (ENSBIXG00005013290) #23	AKAIN1 (ENSBIXG00005012720) #24	ZBTB14 (ENSBIXG00005012690) #25	EPB41L3 (ENSBIXG00005012607) #26	ENSBIXG00005012473	TMEM200C (ENSBIXG00005005828)	ARHGAP28 (ENSBIXG00005012393) #28	LAMA1 (ENSBIXG00005011945) #29	PTPRM (ENSBIXG00005011755) #31	ENSBIXG00005006785	RAB12 (ENSBIXG00005011412) #32	MTCL1 (ENSBIXG00005011362) #33	ENSBIXG00005011194 #34	ANKRD12 (ENSBIXG00005007098) #35	TWSG1 (ENSBIXG00005001011) #36
Cow	MODERN SPECIES	16	COLEC12 (ENSBTAG00000007705) #9	CETN1 (ENSBTAG00000012320)	CLUL1 (ENSBTAG00000014012) #10	TYMS (ENSBTAG00000007003) #11	ENOSF1 (ENSBTAG00000007000) #12	YES1 (ENSBTAG00000001523) #13	ADCYAP1 (ENSBTAG00000020650) #14	METTL4 (ENSBTAG00000021668) #15	NDC80 (ENSBTAG00000021673) #16	SMCHD1 (ENSBTAG00000003354) #17	EMILIN2 (ENSBTAG00000003880) #18	LPIN2 (ENSBTAG00000012060) #19	MYOM1 (ENSBTAG00000019585) #20	MYL12A (ENSBTAG00000016024) #21	MYL12B (ENSBTAG00000026266) ##21	TGIF1 (ENSBTAG00000007718) #22	DLGAP1 (ENSBTAG00000005372) #23	ENSBTAG00000053533	ZBTB14 (ENSBTAG00000038970) #25	EPB41L3 (ENSBTAG00000019251) #26	TMEM200C (ENSBTAG00000046396)	ARHGAP28 (ENSBTAG00000019036) #28	LAMA1 (ENSBTAG00000018160) #29	LRRC30 (ENSBTAG00000046046)	ENSBTAG00000048323	PTPRM (ENSBTAG00000024015) #31	RAB12 (ENSBTAG00000010356) #32	MTCL1 (ENSBTAG00000009459) #33	NDUFV2 (ENSBTAG00000004871) #34	ANKRD12 (ENSBTAG00000002755) #35	TWSG1 (ENSBTAG00000001805) #36
American bison	MODERN SPECIES	2731							METTL4 (ENSBBBG00000015068) #15	NDC80 (ENSBBBG00000000795) #16	SMCHD1 (ENSBBBG00000003527) #17	EMILIN2 (ENSBBBG00000015217) #18	LPIN2 (ENSBBBG00000015266) #19	ENSBBBG00000015278	MYOM1 (ENSBBBG00000015361) #20	MYL12A (ENSBBBG00000015416) #21	MYL12B (ENSBBBG00000015444) ##21	TGIF1 (ENSBBBG00000015487) #22	ENSBBBG00000015493	ENSBBBG00000015722 #23
Caprinae	ANCESTRAL SPECIES	25	ENSGT00950000183074.A #9	ENSGT00940000157209.jb	ENSGT00530000063668.A #10	ENSGT00390000014786 #11	ENSGT00390000014290 #12	ENSGT00940000154920 #13	ENSGT00950000183154.b.a.b #14	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a #18	ENSGT00940000156313 #19	ENSGT00940000154982 #20	ENSGT00940000153607.c.a.d #21	ENSGT00940000153607.c.b ##21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #24	ENSGT00940000158052.a #25	ENSGT00940000157047 #26	ENSGT00530000063698.a.b	ENSGT00940000158929 #28	ENSGT00940000157124 #29	ENSGT00940000164030 #30	ENSGT00940000161019	ENSGT00940000155020 #31	ENSGT00940000159325 #32	ENSGT00950000182982.A #33	ENSGT00390000017580.fb.a #34	ENSGT00940000154742.a #35	ENSGT00390000007058 #36
Rambouillet Sheep	DUPLICATION
Rambouillet Sheep	MODERN SPECIES	15	COLEC12 (ENSOARG00020008142) #9	CETN1 (ENSOARG00020008212)	CLUL1 (ENSOARG00020008252) #10	TYMS (ENSOARG00020008409) #11	ENOSF1 (ENSOARG00020008665) #12	YES1 (ENSOARG00020009131) #13	ADCYAP1 (ENSOARG00020009231) #14	ENSOARG00020009340	METTL4 (ENSOARG00020009416) #15	NDC80 (ENSOARG00020009483) #16	SMCHD1 (ENSOARG00020009606) #17	LPIN2 (ENSOARG00020010928) #19	MYOM1 (ENSOARG00020011271) #20	MRCL3 (ENSOARG00020012194) #21	MYL12B (ENSOARG00020012316) ##21	tgif1 (ENSOARG00020012393) #22	DLGAP1 (ENSOARG00020012505) #23	ENSOARG00020015037	AKAIN1 (ENSOARG00020015062) #24	ZBTB14 (ENSOARG00020015102) #25	EPB41L3 (ENSOARG00020015184) #26	TMEM200C (ENSOARG00020016296)	ENSOARG00020016325	ARHGAP28 (ENSOARG00020016377) #28	LRRC30 (ENSOARG00020017349)	PTPRM (ENSOARG00020017409) #31	RAB12 (ENSOARG00020018846) #32	MTCL1 (ENSOARG00020018971) #33	NDUFV2 (ENSOARG00020019449) #34	ANKRD12 (ENSOARG00020019571) #35	TWSG1 (ENSOARG00020019693) #36
Rambouillet Sheep	MODERN SPECIES	9	ARHGAP5 (ENSOARG00020005438)	ENSOARG00020005406	NUBPL (ENSOARG00020005362)	GPR33 (ENSOARG00020005349)	DTD2 (ENSOARG00020005329)	HEATR5A (ENSOARG00020005213)	HECTD1 (ENSOARG00020005016)	AP4S1 (ENSOARG00020004957)	STRN3 (ENSOARG00020004854)	COCH (ENSOARG00020004770)	SCFD1 (ENSOARG00020004656)	G2E3 (ENSOARG00020004595)	PRKD1 (ENSOARG00020004370)	FOXG1 (ENSOARG00020004300)	NOVA1 (ENSOARG00020004244)	ENSOARG00020004201 #22	ENSOARG00020004189	ENSOARG00020004153	ENSOARG00020003828	ENSOARG00020003470	ENSOARG00020003394	ENSOARG00020003344	ENSOARG00020024767	ENSOARG00020024729	ENSOARG00020024695	MCP-3 (ENSOARG00020024598)	ENSOARG00020024554	ENSOARG00020024498	LOXL1 (ENSOARG00020024474)	STOML1 (ENSOARG00020024379)	ISLR2 (ENSOARG00020024266)
Goat	MODERN SPECIES	16	CLUL1 (ENSCHIG00000012461) #10	TYMS (ENSCHIG00000000075) #11	ENOSF1 (ENSCHIG00000000109) #12	YES1 (ENSCHIG00000000143) #13	ENSCHIG00000000177	ADCYAP1 (ENSCHIG00000000212) #14	METTL4 (ENSCHIG00000000254) #15	NDC80 (ENSCHIG00000000360) #16	SMCHD1 (ENSCHIG00000000392) #17	EMILIN2 (ENSCHIG00000000425) #18	ENSCHIG00000000471	LPIN2 (ENSCHIG00000010140) #19	MYOM1 (ENSCHIG00000014135) #20	MYL12A (ENSCHIG00000016398) #21	MYL12B (ENSCHIG00000009461) ##21	TGIF1 (ENSCHIG00000011164) #22	DLGAP1 (ENSCHIG00000017982) #23	ZBTB14 (ENSCHIG00000004440) #25	EPB41L3 (ENSCHIG00000023908) #26	TMEM200C (ENSCHIG00000004586)	ARHGAP28 (ENSCHIG00000022452) #28	ENSCHIG00000005295 #29	ENSCHIG00000010759 #30	PTPRM (ENSCHIG00000015240) #31	RAB12 (ENSCHIG00000016103) #32	MTCL1 (ENSCHIG00000023205) #33	ENSCHIG00000015681 #34	ENSCHIG00000013412 #35	ENSCHIG00000007393 #35	TWSG1 (ENSCHIG00000026440) #36	RALBP1 (ENSCHIG00000015737) #37
Siberian musk deer	MODERN SPECIES	132								METTL4 (ENSMMSG00000009203) #15	ENSMMSG00000009166	NDC80 (ENSMMSG00000009103) #16	SMCHD1 (ENSMMSG00000008985) #17	EMILIN2 (ENSMMSG00000008939) #18	LPIN2 (ENSMMSG00000008712) #19	MYOM1 (ENSMMSG00000016741) #20	MYL12A (ENSMMSG00000016648) #21	TGIF1 (ENSMMSG00000016578) #22	ENSMMSG00000016560	DLGAP1 (ENSMMSG00000015330) #23	ENSMMSG00000015226	AKAIN1 (ENSMMSG00000015213) #24	ZBTB14 (ENSMMSG00000015196) #25	EPB41L3 (ENSMMSG00000015156) #26	TMEM200C (ENSMMSG00000015145)	ARHGAP28 (ENSMMSG00000014590) #28	LAMA1 (ENSMMSG00000014407) #29	LRRC30 (ENSMMSG00000014378)	PTPRM (ENSMMSG00000014281) #31	ENSMMSG00000014263	ENSMMSG00000014253	RAB12 (ENSMMSG00000014211) #32	MTCL1 (ENSMMSG00000014119) #33
Yarkand deer	MODERN SPECIES	19	CLUL1 (ENSCHYG00000017782) #10	TYMS (ENSCHYG00000017585) #11	ENOSF1 (ENSCHYG00000016711) #12	YES1 (ENSCHYG00000016589) #13	ADCYAP1 (ENSCHYG00000016541) #14	ENSCHYG00000016472	METTL4 (ENSCHYG00000016298) #15	NDC80 (ENSCHYG00000016070) #16	SMCHD1 (ENSCHYG00000015325) #17	EMILIN2 (ENSCHYG00000015216) #18	ENSCHYG00000014880 #19	ENSCHYG00000014825	MYOM1 (ENSCHYG00000014067) #20	ENSCHYG00000026009 #21	MYL12B (ENSCHYG00000025995) ##21	TGIF1 (ENSCHYG00000025940) #22	DLGAP1 (ENSCHYG00000025662) #23	ENSCHYG00000025600	ENSCHYG00000025583	ENSCHYG00000025565	AKAIN1 (ENSCHYG00000025549) #24	ZBTB14 (ENSCHYG00000025527) #25	ENSCHYG00000025521	EPB41L3 (ENSCHYG00000024994) #26	ARHGAP28 (ENSCHYG00000024509) #28	LAMA1 (ENSCHYG00000024245) #29	LRRC30 (ENSCHYG00000024222)	PTPRM (ENSCHYG00000023397) #31	RAB12 (ENSCHYG00000023329) #32	MTCL1 (ENSCHYG00000023220) #33	ENSCHYG00000023192 #34
Suina	ANCESTRAL SPECIES	40	ENSGT00950000183074.A #9	ENSGT00940000157209.jb	ENSGT00530000063668.A #10	ENSGT00390000014786 #11	ENSGT00390000014290 #12	ENSGT00940000154920 #13	ENSGT00950000183154.b.a.b #14	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a #18	ENSGT00940000156313 #19	ENSGT00940000154982 #20	ENSGT00940000153607.c.a.d #21	ENSGT00940000153607.c.b ##21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #24	ENSGT00940000162721	ENSGT00940000158052.a #25	ENSGT00940000157047 #26	ENSGT00530000063698.a.b	ENSGT00940000158929 #28	ENSGT00940000157124 #29	ENSGT00940000161019	ENSGT00940000155020 #31	ENSGT00940000159325 #32	ENSGT00950000182982.A #33	ENSGT00390000017580 #34	ENSGT00940000154742.a #35	ENSGT00390000007058 #36
Pig	MODERN SPECIES	14	TYMS (ENSSSCG00000040678) #11	ENOSF1 (ENSSSCG00000027169) #12	YES1 (ENSSSCG00000031942) #13	ENSSSCG00000040699	ADCYAP1 (ENSSSCG00000035186) #14	ENSSSCG00000059038	METTL4 (ENSSSCG00000034816) #15	ENSSSCG00000020888	NDC80 (ENSSSCG00000003697) #16	SMCHD1 (ENSSSCG00000029030) #17	EMILIN2 (ENSSSCG00000003694) #18	LPIN2 (ENSSSCG00000038494) #19	MYOM1 (ENSSSCG00000003693) #20	ENSSSCG00000003691 #21	MYL12B (ENSSSCG00000058470) ##21	TGIF1 (ENSSSCG00000024174) #22	DLGAP1 (ENSSSCG00000003690) #23	AKAIN1 (ENSSSCG00000056207) #24	ZBTB14 (ENSSSCG00000033032) #25	ENSSSCG00000036800	EPB41L3 (ENSSSCG00000003687) #26	ENSSSCG00000054462	TMEM200C (ENSSSCG00000039627)	ARHGAP28 (ENSSSCG00000021612) #28	LAMA1 (ENSSSCG00000034767) #29	ENSSSCG00000023672 #30	PTPRM (ENSSSCG00000028805) #31	RAB12 (ENSSSCG00000038026) #32	MTCL1 (ENSSSCG00000003684) #33	NDUFV2 (ENSSSCG00000038826) #34	ANKRD12 (ENSSSCG00000003682) #35
Chacoan peccary	MODERN SPECIES	862	THOC1 (ENSCWAG00000006881) #8	COLEC12 (ENSCWAG00000006994) #9	CETN1 (ENSCWAG00000007027)	CLUL1 (ENSCWAG00000007055) #10	TYMS (ENSCWAG00000007139) #11	ENOSF1 (ENSCWAG00000007242) #12	YES1 (ENSCWAG00000007475) #13	ADCYAP1 (ENSCWAG00000007502) #14	METTL4 (ENSCWAG00000007542) #15	NDC80 (ENSCWAG00000007581) #16	SMCHD1 (ENSCWAG00000007610) #17	EMILIN2 (ENSCWAG00000007714) #18	LPIN2 (ENSCWAG00000007732) #19	MYOM1 (ENSCWAG00000007790) #20	MYL12A (ENSCWAG00000008049) #21	TGIF1 (ENSCWAG00000008192) #22	DLGAP1 (ENSCWAG00000008322) #23	AKAIN1 (ENSCWAG00000010892) #24	ENSCWAG00000010946	ZBTB14 (ENSCWAG00000011021) #25	EPB41L3 (ENSCWAG00000011105) #26	TMEM200C (ENSCWAG00000012298)	ARHGAP28 (ENSCWAG00000012324) #28	LAMA1 (ENSCWAG00000012485) #29	LRRC30 (ENSCWAG00000012566)	PTPRM (ENSCWAG00000012594) #31	RAB12 (ENSCWAG00000012826) #32	MTCL1 (ENSCWAG00000012924) #33	NDUFV2 (ENSCWAG00000012959) #34	ANKRD12 (ENSCWAG00000013063) #35	TWSG1 (ENSCWAG00000013144) #36
Laurasiatheria_b	ANCESTRAL SPECIES	13	ENSGT00950000183074.A #9	ENSGT00940000157209.jb	ENSGT00530000063668.A #10	ENSGT00390000014786 #11	ENSGT00390000014290 #12	ENSGT00940000154920 #13	ENSGT00950000183154.b.a.b #14	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a #18	ENSGT00940000156313 #19	ENSGT00940000154982 #20	ENSGT00940000153607.c.a.d #21	ENSGT00940000153607.c.b ##21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #24	ENSGT00940000158052.a #25	ENSGT00940000157047 #26	ENSGT00530000063698.a.b	ENSGT00940000158264.a #27	ENSGT00940000158929 #28	ENSGT00940000157124 #29	ENSGT00940000161019	ENSGT00940000155020 #31	ENSGT00940000159325 #32	ENSGT00950000182982.A #33	ENSGT00390000017580 #34	ENSGT00940000154742.a #35
Carnivora	ANCESTRAL SPECIES	13	ENSGT00940000173400	ENSGT00940000157209.jb	ENSGT00530000063668.A #10	ENSGT00390000014786 #11	ENSGT00390000014290 #12	ENSGT00940000154920 #13	ENSGT00950000183154.b.a.b #14	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a #18	ENSGT00940000156313 #19	ENSGT00940000154982 #20	ENSGT00940000153607.c.a.d #21	ENSGT00940000153607.c.b ##21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #24	ENSGT00940000158052.a #25	ENSGT00940000157047 #26	ENSGT00530000063698.a.b	ENSGT00940000158264.a #27	ENSGT00940000158929 #28	ENSGT00940000157124 #29	ENSGT00940000161019	ENSGT00940000155020 #31	ENSGT00940000159325 #32	ENSGT00950000182982.A #33	ENSGT00390000017580 #34	ENSGT00940000154742.a #35
Felidae	ANCESTRAL SPECIES	24	ENSGT00940000157209.jb	ENSGT00530000063668.A #10	ENSGT00390000014786 #11	ENSGT00390000014290 #12	ENSGT00940000154920 #13	ENSGT00950000183154.b.a.b #14	ENSGT00390000016988.a.a.a.a.a.b	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a #18	ENSGT00940000156313 #19	ENSGT00940000154982 #20	ENSGT00940000153607.c.a.d #21	ENSGT00940000153607.c.b ##21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #24	ENSGT00940000158052.a #25	ENSGT00940000157047 #26	ENSGT00530000063698.a.b	ENSGT00940000158264.a #27	ENSGT00940000158929 #28	ENSGT00940000157124 #29	ENSGT00940000161019	ENSGT00940000155020 #31	ENSGT00940000159325 #32	ENSGT00950000182982.A #33	ENSGT00390000017580 #34	ENSGT00940000154742.a #35
Panthera	ANCESTRAL SPECIES	24	ENSGT00530000063668.A #10	ENSGT00390000014786 #11	ENSGT00390000014290 #12	ENSGT00940000154920 #13	ENSGT00950000183154.b.a.b #14	ENSGT00390000016988.a.a.a.a.a.b	ENSGT00730000110997.k.a	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a #18	ENSGT00940000156313 #19	ENSGT00940000154982 #20	ENSGT00940000153607.c.a.d #21	ENSGT00940000153607.c.b ##21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #24	ENSGT00940000158052.a #25	ENSGT00940000157047 #26	ENSGT00530000063698.a.b	ENSGT00940000158264.a #27	ENSGT00940000158929 #28	ENSGT00940000157124 #29	ENSGT00940000161019	ENSGT00940000155020 #31	ENSGT00940000159325 #32	ENSGT00950000182982.A #33	ENSGT00390000017580 #34	ENSGT00940000154742.a #35	ENSGT00390000007058 #36
Tiger	MODERN SPECIES	304							ENSPTIG00000011880	METTL4 (ENSPTIG00000010967) #15	NDC80 (ENSPTIG00000009398) #16	SMCHD1 (ENSPTIG00000008728) #17	EMILIN2 (ENSPTIG00000006880) #18	LPIN2 (ENSPTIG00000005321) #19	MYOM1 (ENSPTIG00000019775) #20	MYL12A (ENSPTIG00000019252) #21	MYL12B (ENSPTIG00000018527) ##21	TGIF1 (ENSPTIG00000016983) #22	DLGAP1 (ENSPTIG00000010258) #23	AKAIN1 (ENSPTIG00000009523) #24	ZBTB14 (ENSPTIG00000009023) #25	EPB41L3 (ENSPTIG00000018818) #26	L3MBTL4 (ENSPTIG00000017321) #27	ARHGAP28 (ENSPTIG00000014723) #28
Panthera_a	ANCESTRAL SPECIES	26	ENSGT00940000157209.jb	ENSGT00530000063668.A #10	ENSGT00390000014786 #11	ENSGT00390000014290 #12	ENSGT00940000154920 #13	ENSGT00950000183154.b.a.b #14	ENSGT00390000016988.a.a.a.a.a.b	ENSGT00730000110997.k.a	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a #18	ENSGT00940000156313 #19	ENSGT00940000154982 #20	ENSGT00940000153607.c.a.d #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #24	ENSGT00940000158052.a #25	ENSGT00940000157047 #26	ENSGT00530000063698.a.b	ENSGT00940000158264.a #27	ENSGT00940000158929 #28	ENSGT00940000157124 #29	ENSGT00940000161019	ENSGT00940000155020 #31	ENSGT00940000159325 #32	ENSGT00950000182982.A #33	ENSGT00390000017580 #34	ENSGT00940000154742.a #35	ENSGT00390000007058 #36
leopard	MODERN SPECIES	74	ENOSF1 (ENSPPRG00000013866) #12	YES1 (ENSPPRG00000012940) #13	ADCYAP1 (ENSPPRG00000012367) #14	ENSPPRG00000012194	ENSPPRG00000012063	ENSPPRG00000010967	METTL4 (ENSPPRG00000010770) #15	NDC80 (ENSPPRG00000010568) #16	SMCHD1 (ENSPPRG00000009812) #17	EMILIN2 (ENSPPRG00000008241) #18	LPIN2 (ENSPPRG00000008144) #19	MYOM1 (ENSPPRG00000007760) #20	MYL12A (ENSPPRG00000005441) #21	MYL12B (ENSPPRG00000005198) ##21	ENSPPRG00000005105	TGIF1 (ENSPPRG00000005045) #22	DLGAP1 (ENSPPRG00000004760) #23	AKAIN1 (ENSPPRG00000004032) #24	ZBTB14 (ENSPPRG00000003993) #25	EPB41L3 (ENSPPRG00000003607) #26	L3MBTL4 (ENSPPRG00000002728) #27	ARHGAP28 (ENSPPRG00000001666) #28	LAMA1 (ENSPPRG00000023072) #29	LRRC30 (ENSPPRG00000020824)	PTPRM (ENSPPRG00000023610) #31	RAB12 (ENSPPRG00000024521) #32	MTCL1 (ENSPPRG00000024571) #33	NDUFV2 (ENSPPRG00000019611) #34	ANKRD12 (ENSPPRG00000018986) #35	TWSG1 (ENSPPRG00000018563) #36	RALBP1 (ENSPPRG00000018300) #37
lion	MODERN SPECIES	12	CETN1 (ENSPLOG00000017316)	CLUL1 (ENSPLOG00000017176) #10	TYMS (ENSPLOG00000017051) #11	ENOSF1 (ENSPLOG00000016798) #12	YES1 (ENSPLOG00000016606) #13	ADCYAP1 (ENSPLOG00000016557) #14	ENSPLOG00000016509	METTL4 (ENSPLOG00000016387) #15	NDC80 (ENSPLOG00000016248) #16	ENSPLOG00000016223	SMCHD1 (ENSPLOG00000015887) #17	EMILIN2 (ENSPLOG00000015733) #18	LPIN2 (ENSPLOG00000015556) #19	MYOM1 (ENSPLOG00000015128) #20	MYL12A (ENSPLOG00000014986) #21	TGIF1 (ENSPLOG00000014893) #22	DLGAP1 (ENSPLOG00000013859) #23	ENSPLOG00000013749	AKAIN1 (ENSPLOG00000013714) #24	ZBTB14 (ENSPLOG00000013682) #25	EPB41L3 (ENSPLOG00000012964) #26	TMEM200C (ENSPLOG00000012856)	L3MBTL4 (ENSPLOG00000012623) #27	ARHGAP28 (ENSPLOG00000012502) #28	LAMA1 (ENSPLOG00000011989) #29	LRRC30 (ENSPLOG00000011938)	PTPRM (ENSPLOG00000011634) #31	RAB12 (ENSPLOG00000011564) #32	MTCL1 (ENSPLOG00000011328) #33	ENSPLOG00000011275	NDUFV2 (ENSPLOG00000011256) #34
Cat	MODERN SPECIES	243	CETN1 (ENSFCAG00000009226)	CLUL1 (ENSFCAG00000009228) #10	TYMS (ENSFCAG00000009230) #11	ENOSF1 (ENSFCAG00000009233) #12	YES1 (ENSFCAG00000009235) #13	ADCYAP1 (ENSFCAG00000039710) #14	ENSFCAG00000032982	ENSFCAG00000039848	METTL4 (ENSFCAG00000019392) #15	NDC80 (ENSFCAG00000030389) #16	SMCHD1 (ENSFCAG00000029639) #17	EMILIN2 (ENSFCAG00000027624) #18	LPIN2 (ENSFCAG00000027974) #19	MYOM1 (ENSFCAG00000001020) #20	MYL12A (ENSFCAG00000022871) #21	TGIF1 (ENSFCAG00000029898) #22	ENSFCAG00000047431	DLGAP1 (ENSFCAG00000011418) #23	AKAIN1 (ENSFCAG00000041689) #24	ZBTB14 (ENSFCAG00000023573) #25	EPB41L3 (ENSFCAG00000011079) #26	TMEM200C (ENSFCAG00000043742)	L3MBTL4 (ENSFCAG00000031842) #27	ARHGAP28 (ENSFCAG00000015368) #28	LAMA1 (ENSFCAG00000008650) #29	LRRC30 (ENSFCAG00000003109)	PTPRM (ENSFCAG00000013023) #31	RAB12 (ENSFCAG00000027710) #32	MTCL1 (ENSFCAG00000005803) #33	NDUFV2 (ENSFCAG00000036877) #34	ANKRD12 (ENSFCAG00000043867) #35
Caniformia	ANCESTRAL SPECIES	9	ENSGT00940000173400	ENSGT00940000157209.jb	ENSGT00530000063668.A #10	ENSGT00390000014786 #11	ENSGT00390000014290 #12	ENSGT00940000154920 #13	ENSGT00950000183154.b.a.b #14	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a #18	ENSGT00940000156313 #19	ENSGT00940000154982 #20	ENSGT00940000153607.c.a.d #21	ENSGT00940000153607.c.b ##21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #24	ENSGT00940000158052.a #25	ENSGT00940000157047 #26	ENSGT00530000063698.a.b	ENSGT00940000158264.a #27	ENSGT00940000158929 #28	ENSGT00940000157124 #29	ENSGT00940000161019	ENSGT00940000155020 #31	ENSGT00940000159325 #32	ENSGT00950000182982.A #33	ENSGT00390000017580 #34	ENSGT00940000154742.a #35	ENSGT00390000007058 #36
Caniformia_b	ANCESTRAL SPECIES	25	ENSGT00940000173400	ENSGT00940000157209.jb	ENSGT00530000063668.A #10	ENSGT00390000014786 #11	ENSGT00390000014290 #12	ENSGT00940000154920 #13	ENSGT00950000183154.b.a.b #14	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a #18	ENSGT00940000156313 #19	ENSGT00940000154982 #20	ENSGT00940000153607.c.a.d #21	ENSGT00940000153607.c.b ##21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #24	ENSGT00940000158052.a #25	ENSGT00940000157047 #26	ENSGT00530000063698.a.b	ENSGT00940000158264.a #27	ENSGT00940000158929 #28	ENSGT00940000157124 #29	ENSGT00940000161019	ENSGT00940000155020 #31	ENSGT00940000159325 #32	ENSGT00950000182982.A #33	ENSGT00390000017580 #34	ENSGT00940000154742.a #35	ENSGT00390000007058 #36
Mustelinae	ANCESTRAL SPECIES	5	ENSGT00950000183074.A #9	ENSGT00940000157209.jb	ENSGT00530000063668.A #10	ENSGT00390000014786 #11	ENSGT00390000014290 #12	ENSGT00940000154920 #13	ENSGT00950000183154.b.a.b #14	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a #18	ENSGT00940000156313 #19	ENSGT00940000154982 #20	ENSGT00940000153607.c.a.d #21	ENSGT00940000153607.c.b ##21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #24	ENSGT00940000158052.a #25	ENSGT00940000157047 #26	ENSGT00530000063698.a.b	ENSGT00940000158264.a #27	ENSGT00940000158929 #28	ENSGT00940000157124 #29	ENSGT00940000161019	ENSGT00940000155020 #31	ENSGT00940000159325 #32	ENSGT00950000182982.A #33	ENSGT00390000017580 #34	ENSGT00940000154742.a #35	ENSGT00390000007058 #36
Ferret	MODERN SPECIES	170	CLUL1 (ENSMPUG00000005429) #10	TYMS (ENSMPUG00000005419) #11	ENOSF1 (ENSMPUG00000005407) #12	YES1 (ENSMPUG00000005394) #13	ADCYAP1 (ENSMPUG00000005386) #14	ENSMPUG00000019883	METTL4 (ENSMPUG00000005375) #15	NDC80 (ENSMPUG00000005356) #16	SMCHD1 (ENSMPUG00000005190) #17	EMILIN2 (ENSMPUG00000005128) #18	LPIN2 (ENSMPUG00000005110) #19	MYOM1 (ENSMPUG00000005090) #20	MYL12A (ENSMPUG00000005057) #21	ENSMPUG00000005055	MYL12B (ENSMPUG00000005011) ##21	TGIF1 (ENSMPUG00000005004) #22	DLGAP1 (ENSMPUG00000004995) #23	ZBTB14 (ENSMPUG00000004990) #25	EPB41L3 (ENSMPUG00000004981) #26	ENSMPUG00000019882	L3MBTL4 (ENSMPUG00000004964) #27	ENSMPUG00000004959	ENSMPUG00000004930	ARHGAP28 (ENSMPUG00000004917) #28	LAMA1 (ENSMPUG00000004879) #29	LRRC30 (ENSMPUG00000019881)	PTPRM (ENSMPUG00000004846) #31	RAB12 (ENSMPUG00000004836) #32	ENSMPUG00000004833	ENSMPUG00000004794	MTCL1 (ENSMPUG00000004784) #33
American mink	MODERN SPECIES	31						ENSNVIG00000011735	ENSNVIG00000011724	METTL4 (ENSNVIG00000011683) #15	NDC80 (ENSNVIG00000011663) #16	SMCHD1 (ENSNVIG00000011639) #17	EMILIN2 (ENSNVIG00000011628) #18	LPIN2 (ENSNVIG00000011608) #19	MYOM1 (ENSNVIG00000011397) #20	MYL12A (ENSNVIG00000011359) #21	MYL12B (ENSNVIG00000011345) ##21	TGIF1 (ENSNVIG00000011316) #22	DLGAP1 (ENSNVIG00000011137) #23	ENSNVIG00000011129	AKAIN1 (ENSNVIG00000011118) #24	ZBTB14 (ENSNVIG00000011093) #25	EPB41L3 (ENSNVIG00000010941) #26	L3MBTL4 (ENSNVIG00000010862) #27	ARHGAP28 (ENSNVIG00000010825) #28	LAMA1 (ENSNVIG00000010722) #29	LRRC30 (ENSNVIG00000010703)	PTPRM (ENSNVIG00000010512) #31	RAB12 (ENSNVIG00000010489) #32	MTCL1 (ENSNVIG00000010451) #33	NDUFV2 (ENSNVIG00000010419) #34	ANKRD12 (ENSNVIG00000010366) #35	TWSG1 (ENSNVIG00000010343) #36
Ursidae	ANCESTRAL SPECIES	23	ENSGT00940000173400	ENSGT00940000157209.jb	ENSGT00530000063668.A #10	ENSGT00390000014786 #11	ENSGT00390000014290 #12	ENSGT00940000154920 #13	ENSGT00950000183154.b.a.b #14	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a #18	ENSGT00940000156313 #19	ENSGT00940000154982 #20	ENSGT00940000153607.c.a.d #21	ENSGT00940000153607.c.b ##21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #24	ENSGT00940000158052.a #25	ENSGT00940000157047 #26	ENSGT00940000158264.a #27	ENSGT00940000158929 #28	ENSGT00940000157124 #29	ENSGT00940000161019	ENSGT00940000155020 #31	ENSGT00940000159325 #32	ENSGT00950000182982.A #33	ENSGT00390000017580 #34	ENSGT00940000154742.a #35	ENSGT00390000007058 #36	ENSGT00940000154639 #37
Ursus	ANCESTRAL SPECIES	25	ENSGT00940000173400	ENSGT00940000157209.jb	ENSGT00530000063668.A #10	ENSGT00390000014786 #11	ENSGT00390000014290 #12	ENSGT00940000154920 #13	ENSGT00950000183154.b.a.b #14	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a #18	ENSGT00940000156313 #19	ENSGT00940000154982 #20	ENSGT00940000153607.c.a.d #21	ENSGT00940000153607.c.b ##21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #24	ENSGT00940000158052.a #25	ENSGT00940000157047 #26	ENSGT00940000158264.a #27	ENSGT00940000158929 #28	ENSGT00940000157124 #29	ENSGT00940000161019	ENSGT00940000155020 #31	ENSGT00940000159325 #32	ENSGT00950000182982.A #33	ENSGT00390000017580 #34	ENSGT00940000154742.a #35	ENSGT00390000007058 #36	ENSGT00940000154639 #37
American black bear	DUPLICATION
American black bear	MODERN SPECIES	9323																ENSUAMG00000002428 #22
American black bear	MODERN SPECIES	9361																ENSUAMG00000002687 #22
Polar bear	MODERN SPECIES	96	CETN1 (ENSUMAG00000019682)	CLUL1 (ENSUMAG00000019680) #10	TYMS (ENSUMAG00000019677) #11	ENOSF1 (ENSUMAG00000019674) #12	YES1 (ENSUMAG00000019673) #13	ENSUMAG00000019669	ADCYAP1 (ENSUMAG00000019664) #14	METTL4 (ENSUMAG00000019651) #15	NDC80 (ENSUMAG00000019602) #16	SMCHD1 (ENSUMAG00000019575) #17	EMILIN2 (ENSUMAG00000019556) #18	LPIN2 (ENSUMAG00000019544) #19	MYOM1 (ENSUMAG00000019140) #20	MYL12A (ENSUMAG00000019097) #21	MYL12B (ENSUMAG00000019096) ##21	TGIF1 (ENSUMAG00000019091) #22	DLGAP1 (ENSUMAG00000018976) #23	AKAIN1 (ENSUMAG00000018955) #24	ZBTB14 (ENSUMAG00000018942) #25	EPB41L3 (ENSUMAG00000018925) #26	L3MBTL4 (ENSUMAG00000018879) #27	ARHGAP28 (ENSUMAG00000018815) #28	LAMA1 (ENSUMAG00000018773) #29	LRRC30 (ENSUMAG00000018751)	PTPRM (ENSUMAG00000018739) #31	ENSUMAG00000018727 #32	MTCL1 (ENSUMAG00000018721) #33	NDUFV2 (ENSUMAG00000018713) #34	ANKRD12 (ENSUMAG00000018698) #35	TWSG1 (ENSUMAG00000018695) #36	RALBP1 (ENSUMAG00000018688) #37
Giant Panda	MODERN SPECIES	5	CETN1 (ENSAMEG00000019837)	CLUL1 (ENSAMEG00000006626) #10	ENSAMEG00000025934	TYMS (ENSAMEG00000006607) #11	ENOSF1 (ENSAMEG00000006581) #12	YES1 (ENSAMEG00000006544) #13	ADCYAP1 (ENSAMEG00000006537) #14	METTL4 (ENSAMEG00000010116) #15	NDC80 (ENSAMEG00000010069) #16	SMCHD1 (ENSAMEG00000010022) #17	EMILIN2 (ENSAMEG00000009998) #18	LPIN2 (ENSAMEG00000009951) #19	MYOM1 (ENSAMEG00000010570) #20	MYL12A (ENSAMEG00000026960) #21	MYL12B (ENSAMEG00000028707) ##21	TGIF1 (ENSAMEG00000012674) #22	DLGAP1 (ENSAMEG00000012677) #23	AKAIN1 (ENSAMEG00000020013) #24	ZBTB14 (ENSAMEG00000020014) #25	EPB41L3 (ENSAMEG00000000602) #26	L3MBTL4 (ENSAMEG00000006857) #27	ARHGAP28 (ENSAMEG00000006845) #28	LAMA1 (ENSAMEG00000007475) #29	LRRC30 (ENSAMEG00000018805)	PTPRM (ENSAMEG00000007456) #31	RAB12 (ENSAMEG00000007452) #32	MTCL1 (ENSAMEG00000007437) #33	NDUFV2 (ENSAMEG00000007415) #34	ANKRD12 (ENSAMEG00000007392) #35	TWSG1 (ENSAMEG00000028641) #36	ENSAMEG00000007499 #37
Canidae	ANCESTRAL SPECIES	1	ENSGT00940000157209.jb	ENSGT00530000063668.A #10	ENSGT00390000014786 #11	ENSGT00390000014290 #12	ENSGT00940000154920 #13	ENSGT00950000183154.b.a.b #14	ENSGT00390000016292.i.b	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a #18	ENSGT00940000156313 #19	ENSGT00940000154982 #20	ENSGT00940000153607.c.a.d #21	ENSGT00940000153607.c.b ##21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #24	ENSGT00940000158052.a #25	ENSGT00940000157047 #26	ENSGT00530000063698.a.b	ENSGT00940000158264.a #27	ENSGT00940000158929 #28	ENSGT00940000157124 #29	ENSGT00940000161019	ENSGT00940000155020 #31	ENSGT00940000159325 #32	ENSGT00950000182982.A #33	ENSGT00390000017580 #34	ENSGT00940000154742.a #35	ENSGT00390000007058 #36
Red fox	MODERN SPECIES	55						ENSVVUG00000006975	METTL4 (ENSVVUG00000006988) #15	NDC80 (ENSVVUG00000007016) #16	ENSVVUG00000007254	SMCHD1 (ENSVVUG00000007320) #17	EMILIN2 (ENSVVUG00000008678) #18	LPIN2 (ENSVVUG00000008689) #19	MYOM1 (ENSVVUG00000008791) #20	ENSVVUG00000009225 ##21	MYL12B (ENSVVUG00000009238) ##21	TGIF1 (ENSVVUG00000009272) #22	DLGAP1 (ENSVVUG00000009317) #23	ZBTB14 (ENSVVUG00000010107) #25	EPB41L3 (ENSVVUG00000010125) #26	ENSVVUG00000010208	L3MBTL4 (ENSVVUG00000010230) #27	ARHGAP28 (ENSVVUG00000010346) #28	ENSVVUG00000010487	LAMA1 (ENSVVUG00000010548) #29	ENSVVUG00000011552	LRRC30 (ENSVVUG00000011556)	PTPRM (ENSVVUG00000011599) #31	RAB12 (ENSVVUG00000011748) #32	MTCL1 (ENSVVUG00000011763) #33	NDUFV2 (ENSVVUG00000011795) #34	ANKRD12 (ENSVVUG00000011805) #35
Canis_lupus	ANCESTRAL SPECIES	4	ENSGT00530000063668.A #10	ENSGT00390000014786 #11	ENSGT00390000014290 #12	ENSGT00940000154920 #13	ENSGT00950000183154.b.a.b #14	ENSGT00390000016292.i.b	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a #18	ENSGT00940000156313 #19	ENSGT00940000154982 #20	ENSGT00940000153607.c.a.d #21	ENSGT00940000153607.c.b ##21	ENSGT00940000155458.pc	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #24	ENSGT00940000158052.a #25	ENSGT00940000157047 #26	ENSGT00530000063698.a.b	ENSGT00940000158264.a #27	ENSGT00940000158929 #28	ENSGT00940000157124 #29	ENSGT00940000161019	ENSGT00940000155020 #31	ENSGT00940000159325 #32	ENSGT00950000182982.A #33	ENSGT00390000017580 #34	ENSGT00940000154742.a #35	ENSGT00390000007058 #36
Dog	MODERN SPECIES	35	ENOSF1 (ENSCAFG00845002065) #12	YES1 (ENSCAFG00845002202) #13	ADCYAP1 (ENSCAFG00845002272) #14	ENSCAFG00845002314	ENSCAFG00845002328	ENSCAFG00845002349	METTL4 (ENSCAFG00845002376) #15	NDC80 (ENSCAFG00845002475) #16	SMCHD1 (ENSCAFG00845002514) #17	EMILIN2 (ENSCAFG00845002641) #18	LPIN2 (ENSCAFG00845002673) #19	MYOM1 (ENSCAFG00845002811) #20	ENSCAFG00845002989 #21	MYL12B (ENSCAFG00845003004) ##21	ENSCAFG00845003014	TGIF1 (ENSCAFG00845003025) #22	DLGAP1 (ENSCAFG00845003202) #23	AKAIN1 (ENSCAFG00845003415) #24	ZBTB14 (ENSCAFG00845003431) #25	EPB41L3 (ENSCAFG00845003573) #26	TMEM200C (ENSCAFG00845003836)	L3MBTL4 (ENSCAFG00845003867) #27	ARHGAP28 (ENSCAFG00845003916) #28	ENSCAFG00845003930	LAMA1 (ENSCAFG00845004002) #29	ENSCAFG00845004087	LRRC30 (ENSCAFG00845004098)	PTPRM (ENSCAFG00845004181) #31	RAB12 (ENSCAFG00845004291) #32	MTCL1 (ENSCAFG00845004330) #33	ENSCAFG00845004451
Dingo	DUPLICATION
Dingo	MODERN SPECIES	271	YES1 (ENSCAFG00020018034) #13	ADCYAP1 (ENSCAFG00020020268) #14	ENSCAFG00020020280	ENSCAFG00020020296	ENSCAFG00020020307	ENSCAFG00020020312	METTL4 (ENSCAFG00020020313) #15	NDC80 (ENSCAFG00020020317) #16	SMCHD1 (ENSCAFG00020020366) #17	EMILIN2 (ENSCAFG00020020531) #18	LPIN2 (ENSCAFG00020020533) #19	MYOM1 (ENSCAFG00020020583) #20	ENSCAFG00020020906 #21	MYL12B (ENSCAFG00020020908) ##21	ENSCAFG00020020914	TGIF1 (ENSCAFG00020020919) #22	DLGAP1 (ENSCAFG00020020947) #23	ENSCAFG00020021056	ENSCAFG00020021066	ZBTB14 (ENSCAFG00020021068) #25	ENSCAFG00020021069	EPB41L3 (ENSCAFG00020021170) #26	L3MBTL4 (ENSCAFG00020022524) #27	ENSCAFG00020022527	ENSCAFG00020022528	ENSCAFG00020022530 #28	ENSCAFG00020022531 #29	ENSCAFG00020022535 #29	ENSCAFG00020022536	LRRC30 (ENSCAFG00020022537)	PTPRM (ENSCAFG00020022563) #31
Dingo	DUPLICATION
Dingo	MODERN SPECIES	343	ENSCAFG00020005571	RBM12 (ENSCAFG00020005650)	NFS1 (ENSCAFG00020005653)	ROMO1 (ENSCAFG00020005664)	ENSCAFG00020005671	RBM39 (ENSCAFG00020005676)	PHF20 (ENSCAFG00020005691)	SCAND1 (ENSCAFG00020005777)	ENSCAFG00020005787	EPB41L1 (ENSCAFG00020005807)	AAR2 (ENSCAFG00020005856)	ENSCAFG00020005862	ENSCAFG00020005865	ENSCAFG00020005870	ENSCAFG00020005874	ENSCAFG00020005881 #22	RAB5IF (ENSCAFG00020005885)	SLA2 (ENSCAFG00020005890)	ENSCAFG00020005893	DSN1 (ENSCAFG00020005917)	SOGA1 (ENSCAFG00020005922) ##33	ENSCAFG00020005973	TLDC2 (ENSCAFG00020005977)	SAMHD1 (ENSCAFG00020006094)	RBL1 (ENSCAFG00020012391)	ENSCAFG00020012444	ENSCAFG00020012473	RPN2 (ENSCAFG00020012479)	GHRH (ENSCAFG00020012483) ##14	MANBAL (ENSCAFG00020012487)	SRC (ENSCAFG00020012489)
Dingo	MODERN SPECIES	401	ENSCAFG00020005120	LRTM1 (ENSCAFG00020005138)	ENSCAFG00020005144	ENSCAFG00020005180	WNT5A (ENSCAFG00020005184)	ERC2 (ENSCAFG00020005226)	CCDC66 (ENSCAFG00020005515)	TASOR (ENSCAFG00020005538)	ARHGEF3 (ENSCAFG00020005760)	IL17RD (ENSCAFG00020005794)	HESX1 (ENSCAFG00020005831)	ENSCAFG00020005837	APPL1 (ENSCAFG00020005864)	ASB14 (ENSCAFG00020006536)	DNAH12 (ENSCAFG00020006557)	ENSCAFG00020006685 #22	PDE12 (ENSCAFG00020006692)	ARF4 (ENSCAFG00020006698)	DENND6A (ENSCAFG00020006723)	SLMAP (ENSCAFG00020007038)	FLNB (ENSCAFG00020008260)	ENSCAFG00020010019	DNASE1L3 (ENSCAFG00020010119)	ABHD6 (ENSCAFG00020010122)	RPP14 (ENSCAFG00020010128)	HTD2 (ENSCAFG00020010130)	PXK (ENSCAFG00020010131)	PDHB (ENSCAFG00020010134)	KCTD6 (ENSCAFG00020010154)	ACOX2 (ENSCAFG00020010158)	FAM107A (ENSCAFG00020010161)
Laurasiatheria_c	ANCESTRAL SPECIES	24	ENSGT00950000183074.A #9	ENSGT00940000157209.jb	ENSGT00530000063668.A #10	ENSGT00390000014786 #11	ENSGT00390000014290 #12	ENSGT00940000154920 #13	ENSGT00950000183154.b.a.b #14	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a #18	ENSGT00940000156313 #19	ENSGT00940000154982 #20	ENSGT00940000153607.c.a.d #21	ENSGT00940000153607.c.b ##21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #24	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT01020000231229	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000158052.a #25	ENSGT00940000157047 #26	ENSGT00530000063698.a.b	ENSGT00940000158264.a #27	ENSGT00940000158929 #28	ENSGT00940000157124 #29	ENSGT00940000161019
Chiroptera	ANCESTRAL SPECIES	26	ENSGT00950000183074.A #9	ENSGT00940000157209.jb	ENSGT00530000063668.A #10	ENSGT00390000014786 #11	ENSGT00390000014290 #12	ENSGT00940000154920 #13	ENSGT00950000183154.b.a.b #14	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a #18	ENSGT00940000156313 #19	ENSGT00940000154982 #20	ENSGT00940000153607.c.a.d #21	ENSGT00940000153607.c.b ##21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #24	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT01020000231229	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000158052.a #25	ENSGT00940000157047 #26	ENSGT00530000063698.a.b	ENSGT00940000158264.a #27	ENSGT00940000158929 #28	ENSGT00940000157124 #29	ENSGT00940000161019
Megabat	MODERN SPECIES	554											EMILIN2 (ENSPVAG00000007219) #18	LPIN2 (ENSPVAG00000007221) #19	MYOM1 (ENSPVAG00000007223) #20	MYL12A (ENSPVAG00000007226) #21	MYL12B (ENSPVAG00000007227) ##21	TGIF1 (ENSPVAG00000007228) #22
Microchiroptera	ANCESTRAL SPECIES	26	ENSGT00950000183074.A #9	ENSGT00940000157209.jb	ENSGT00530000063668.A #10	ENSGT00390000014786 #11	ENSGT00390000014290 #12	ENSGT00940000154920 #13	ENSGT00950000183154.b.a.b #14	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a #18	ENSGT00940000156313 #19	ENSGT00940000154982 #20	ENSGT00940000153607.d ##21	ENSGT00940000153607.c.b ##21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #24	ENSGT00940000162359	ENSGT01020000231229	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000158052.a #25	ENSGT00940000157047 #26	ENSGT00530000063698.a.b	ENSGT00940000158264.a #27	ENSGT00940000158929 #28	ENSGT00940000157124 #29	ENSGT00940000161019	ENSGT00940000155020 #31	ENSGT00940000159325 #32
Microbat	MODERN SPECIES	995								METTL4 (ENSMLUG00000003351) #15	NDC80 (ENSMLUG00000003354) #16	SMCHD1 (ENSMLUG00000003378) #17	EMILIN2 (ENSMLUG00000003397) #18	LPIN2 (ENSMLUG00000003403) #19	ENSMLUG00000029548	MYOM1 (ENSMLUG00000003417) #20	MYL12B (ENSMLUG00000005189) ##21	TGIF1 (ENSMLUG00000025199) #22	DLGAP1 (ENSMLUG00000012142) #23	ENSMLUG00000030528	ZBTB14 (ENSMLUG00000016123) #25	EPB41L3 (ENSMLUG00000016125) #26	L3MBTL4 (ENSMLUG00000002011) #27	ENSMLUG00000023508	ARHGAP28 (ENSMLUG00000005314) #28	LAMA1 (ENSMLUG00000004002) #29	LRRC30 (ENSMLUG00000004630)	PTPRM (ENSMLUG00000016507) #31	RAB12 (ENSMLUG00000002883) #32	MTCL1 (ENSMLUG00000002889) #33	ENSMLUG00000013891	NDUFV2 (ENSMLUG00000013503) #34	ANKRD12 (ENSMLUG00000008632) #35
Greater horseshoe bat	MODERN SPECIES	10	TYMS (ENSRFEG00010017484) #11	YES1 (ENSRFEG00010017283) #13	ADCYAP1 (ENSRFEG00010017231) #14	ENSRFEG00010017213	ENSRFEG00010017153	ENSRFEG00010017105	ENSRFEG00010017086	METTL4 (ENSRFEG00010017011) #15	NDC80 (ENSRFEG00010016810) #16	SMCHD1 (ENSRFEG00010016132) #17	EMILIN2 (ENSRFEG00010016098) #18	LPIN2 (ENSRFEG00010016004) #19	MYOM1 (ENSRFEG00010014872) #20	ENSRFEG00010014795 ##21	MYL12B (ENSRFEG00010014767) ##21	TGIF1 (ENSRFEG00010014659) #22	DLGAP1 (ENSRFEG00010014146) #23	AKAIN1 (ENSRFEG00010014046) #24	ENSRFEG00010014022	ZBTB14 (ENSRFEG00010013973) #25	EPB41L3 (ENSRFEG00010012327) #26	ENSRFEG00010012203	TMEM200C (ENSRFEG00010012187)	L3MBTL4 (ENSRFEG00010011944) #27	ENSRFEG00010011861	ARHGAP28 (ENSRFEG00010011354) #28	LAMA1 (ENSRFEG00010011271) #29	LRRC30 (ENSRFEG00010011243)	PTPRM (ENSRFEG00010010873) #31	RAB12 (ENSRFEG00010010724) #32	ENSRFEG00010010493
Equus	ANCESTRAL SPECIES	36	ENSGT00950000183074.A #9	ENSGT00940000157209.jb	ENSGT00530000063668.A #10	ENSGT00390000014786 #11	ENSGT00390000014290 #12	ENSGT00940000154920 #13	ENSGT00950000183154.b.a.b #14	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a #18	ENSGT00940000156313.i #19	ENSGT00940000154982 #20	ENSGT00940000153607.c.a.d #21	ENSGT00940000153607.c.b ##21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #24	ENSGT00940000158052.a #25	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT01090000263359	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00950000182922.a.a.a.b.a.b.a.b.b	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a
Horse	MODERN SPECIES	29	COLEC12 (ENSECAG00000018963) #9	CETN1 (ENSECAG00000058680)	CLUL1 (ENSECAG00000022352) #10	TYMS (ENSECAG00000023203) #11	ENOSF1 (ENSECAG00000012547) #12	YES1 (ENSECAG00000021666) #13	ADCYAP1 (ENSECAG00000033061) #14	METTL4 (ENSECAG00000006301) #15	NDC80 (ENSECAG00000008827) #16	SMCHD1 (ENSECAG00000014144) #17	EMILIN2 (ENSECAG00000057052) #18	LPIN2 (ENSECAG00000006280) #19	MYOM1 (ENSECAG00000013468) #20	MYL12A (ENSECAG00000051472) #21	MYL12B (ENSECAG00000038682) ##21	TGIF1 (ENSECAG00000011078) #22	DLGAP1 (ENSECAG00000013739) #23	AKAIN1 (ENSECAG00000033364) #24	ZBTB14 (ENSECAG00000019218) #25	LAMA3 (ENSECAG00000021277)	ENSECAG00000054828	ENSECAG00000043961	TTC39C (ENSECAG00000010545)	CABYR (ENSECAG00000014148)	OSBPL1A (ENSECAG00000015182)	ENSECAG00000056623	IMPACT (ENSECAG00000020098)	HRH4 (ENSECAG00000006494)	ZNF521 (ENSECAG00000006546)	ENSECAG00000004392	ENSECAG00000049495
Donkey	MODERN SPECIES	27	ENSEASG00005026491	ENSEASG00005029646	ENSEASG00005034896	ENSEASG00005026337	ENSEASG00005025616	ENSEASG00005026849	ENSEASG00005024394	ENSEASG00005002722 #15	ENSEASG00005002730 #16	SMCHD1 (ENSEASG00005002865) #17	EMILIN2 (ENSEASG00005003573) #18	ENSEASG00005003579 #19	MYOM1 (ENSEASG00005003603) #20	MYL12A (ENSEASG00005023571) #21	MYL12B (ENSEASG00005029990) ##21	TGIF1 (ENSEASG00005026544) #22	ENSEASG00005024534 #23	DLGAP1 (ENSEASG00005003653) #23	AKAIN1 (ENSEASG00005038786) #24	ENSEASG00005004330 #25	ENSEASG00005004417	ENSEASG00005004519	ENSEASG00005029371	ENSEASG00005004560	ENSEASG00005004612	ENSEASG00005005115	IMPACT (ENSEASG00005005120)	HRH4 (ENSEASG00005029823)	ZNF521 (ENSEASG00005005129)	ENSEASG00005005135	PSMA8 (ENSEASG00005005145)
Eulipotyphla	ANCESTRAL SPECIES	1865																ENSGT00940000155230 #22	ENSGT00940000156220 #23
Hedgehog	MODERN SPECIES	9477																TGIF1 (ENSEEUG00000004881) #22
Common shrew	MODERN SPECIES	5585																TGIF1 (ENSSARG00000002819) #22	DLGAP1 (ENSSARG00000002827) #23