Percora_a	ANCESTRAL SPECIES	28	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124	ENSGT00940000161019 #31	ENSGT00940000155020 #32	ENSGT00940000159325 #33	ENSGT00950000182982.A #34	ENSGT00390000017580 #35	ENSGT00940000154742.a #36	ENSGT00390000007058 #37
Bovidae	ANCESTRAL SPECIES	28	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124	ENSGT00940000161019 #31	ENSGT00940000155020 #32	ENSGT00940000159325 #33	ENSGT00950000182982.A #34	ENSGT00390000017580.fb.a #35	ENSGT00940000154742.a #36	ENSGT00390000007058 #37
Caprinae	ANCESTRAL SPECIES	25	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124	ENSGT00940000164030	ENSGT00940000161019 #31	ENSGT00940000155020 #32	ENSGT00940000159325 #33	ENSGT00950000182982.A #34	ENSGT00390000017580.fb.a #35	ENSGT00940000154742.a #36	ENSGT00390000007058 #37
Rambouillet Sheep	DUPLICATION
Rambouillet Sheep	MODERN SPECIES	15	COLEC12 (ENSOARG00020008142) #7	CETN1 (ENSOARG00020008212) #8	CLUL1 (ENSOARG00020008252) #9	TYMS (ENSOARG00020008409) #10	ENOSF1 (ENSOARG00020008665) #11	YES1 (ENSOARG00020009131) #12	ADCYAP1 (ENSOARG00020009231) #13	ENSOARG00020009340 #14	METTL4 (ENSOARG00020009416) #15	NDC80 (ENSOARG00020009483) #16	SMCHD1 (ENSOARG00020009606) #17	LPIN2 (ENSOARG00020010928) #18	MYOM1 (ENSOARG00020011271) #19	MRCL3 (ENSOARG00020012194) #20	MYL12B (ENSOARG00020012316) #21	tgif1 (ENSOARG00020012393) #22	DLGAP1 (ENSOARG00020012505) #23	ENSOARG00020015037 #24	AKAIN1 (ENSOARG00020015062) #25	ZBTB14 (ENSOARG00020015102) #26	EPB41L3 (ENSOARG00020015184) #27	TMEM200C (ENSOARG00020016296) #28	ENSOARG00020016325 #29	ARHGAP28 (ENSOARG00020016377) #30	LRRC30 (ENSOARG00020017349) #31	PTPRM (ENSOARG00020017409) #32	RAB12 (ENSOARG00020018846) #33	MTCL1 (ENSOARG00020018971) #34	NDUFV2 (ENSOARG00020019449) #35	ANKRD12 (ENSOARG00020019571) #36	TWSG1 (ENSOARG00020019693) #37
Rambouillet Sheep	MODERN SPECIES	9	ARHGAP5 (ENSOARG00020005438)	ENSOARG00020005406	NUBPL (ENSOARG00020005362)	GPR33 (ENSOARG00020005349)	DTD2 (ENSOARG00020005329)	HEATR5A (ENSOARG00020005213)	HECTD1 (ENSOARG00020005016)	AP4S1 (ENSOARG00020004957)	STRN3 (ENSOARG00020004854)	COCH (ENSOARG00020004770)	SCFD1 (ENSOARG00020004656)	G2E3 (ENSOARG00020004595)	PRKD1 (ENSOARG00020004370)	FOXG1 (ENSOARG00020004300)	NOVA1 (ENSOARG00020004244)	ENSOARG00020004201 ##22	ENSOARG00020004189	ENSOARG00020004153	ENSOARG00020003828	ENSOARG00020003470	ENSOARG00020003394	ENSOARG00020003344	ENSOARG00020024767	ENSOARG00020024729	ENSOARG00020024695	MCP-3 (ENSOARG00020024598)	ENSOARG00020024554	ENSOARG00020024498	LOXL1 (ENSOARG00020024474)	STOML1 (ENSOARG00020024379)	ISLR2 (ENSOARG00020024266)
Goat	MODERN SPECIES	16	CLUL1 (ENSCHIG00000012461) #9	TYMS (ENSCHIG00000000075) #10	ENOSF1 (ENSCHIG00000000109) #11	YES1 (ENSCHIG00000000143) #12	ENSCHIG00000000177	ADCYAP1 (ENSCHIG00000000212) #13	METTL4 (ENSCHIG00000000254) #15	NDC80 (ENSCHIG00000000360) #16	SMCHD1 (ENSCHIG00000000392) #17	EMILIN2 (ENSCHIG00000000425)	ENSCHIG00000000471	LPIN2 (ENSCHIG00000010140) #18	MYOM1 (ENSCHIG00000014135) #19	MYL12A (ENSCHIG00000016398) #20	MYL12B (ENSCHIG00000009461) #21	TGIF1 (ENSCHIG00000011164) #22	DLGAP1 (ENSCHIG00000017982) #23	ZBTB14 (ENSCHIG00000004440) #26	EPB41L3 (ENSCHIG00000023908) #27	TMEM200C (ENSCHIG00000004586) #28	ARHGAP28 (ENSCHIG00000022452) #30	ENSCHIG00000005295	ENSCHIG00000010759	PTPRM (ENSCHIG00000015240) #32	RAB12 (ENSCHIG00000016103) #33	MTCL1 (ENSCHIG00000023205) #34	ENSCHIG00000015681 #35	ENSCHIG00000013412 #36	ENSCHIG00000007393 #36	TWSG1 (ENSCHIG00000026440) #37	RALBP1 (ENSCHIG00000015737)
Bovinae	ANCESTRAL SPECIES	28	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220.i #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124	ENSGT00940000161019 #31	ENSGT00940000155020 #32	ENSGT00940000159325 #33	ENSGT00950000182982.A #34	ENSGT00390000017580.fb.a #35	ENSGT00940000154742.a #36	ENSGT00390000007058 #37
Bos	ANCESTRAL SPECIES	29	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786.s #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220.i #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124	ENSGT00940000161019 #31	ENSGT00940000155020 #32	ENSGT01100000263481.n.a.a.a.b.a.a.a.a.b.a.b.b.a.b.b	ENSGT00940000159325 #33	ENSGT00950000182982.A #34	ENSGT00390000017580.fb.a #35	ENSGT00940000154742.a #36	ENSGT00390000007058 #37
Bos_a	ANCESTRAL SPECIES	28	ENSGT00390000016232	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786.s #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000155230 #22	ENSGT00940000156220.i #23	ENSGT01050000245099	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00940000158929 #30	ENSGT00940000157124	ENSGT00940000161019 #31	ENSGT00940000155020.q #32	ENSGT01100000263481.n.a.a.a.b.a.a.a.a.b.a.b.b.a.b.b	ENSGT00940000159325 #33	ENSGT00950000182982.A #34	ENSGT00390000017580.fb.a #35	ENSGT00940000154742.a #36	ENSGT00390000007058 #37
Wild yak	MODERN SPECIES	583									METTL4 (ENSBMUG00000001809) #15	NDC80 (ENSBMUG00000001772) #16	SMCHD1 (ENSBMUG00000001733) #17	EMILIN2 (ENSBMUG00000001647)	LPIN2 (ENSBMUG00000001563) #18	MYOM1 (ENSBMUG00000001469) #19	MYL12A (ENSBMUG00000001371) #20	TGIF1 (ENSBMUG00000001305) #22	DLGAP1 (ENSBMUG00000001028) #23
Domestic yak	MODERN SPECIES	13	CETN1 (ENSBGRG00000019384) #8	CLUL1 (ENSBGRG00000019406) #9	ENSBGRG00000019538 #10	ENOSF1 (ENSBGRG00000019894) #11	YES1 (ENSBGRG00000020429) #12	ADCYAP1 (ENSBGRG00000020763) #13	METTL4 (ENSBGRG00000020859) #15	NDC80 (ENSBGRG00000021015) #16	SMCHD1 (ENSBGRG00000021081) #17	ENSBGRG00000021468	EMILIN2 (ENSBGRG00000021481)	LPIN2 (ENSBGRG00000021549) #18	MYOM1 (ENSBGRG00000022019) #19	MYL12A (ENSBGRG00000022681) #20	ENSBGRG00000022793	TGIF1 (ENSBGRG00000022806) #22	DLGAP1 (ENSBGRG00000022857) #23	ENSBGRG00000023385	ZBTB14 (ENSBGRG00000023412) #26	EPB41L3 (ENSBGRG00000023492) #27	ENSBGRG00000023895	ARHGAP28 (ENSBGRG00000023924) #30	LAMA1 (ENSBGRG00000024286)	LRRC30 (ENSBGRG00000024420) #31	PTPRM (ENSBGRG00000024466) #32	ENSBGRG00000024579	RAB12 (ENSBGRG00000024618) #33	MTCL1 (ENSBGRG00000024711) #34	NDUFV2 (ENSBGRG00000024870) #35	ANKRD12 (ENSBGRG00000024894) #36	TWSG1 (ENSBGRG00000024927) #37
Bos_b	ANCESTRAL SPECIES	34	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786.s #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #15	ENSGT00390000018386 #16	ENSGT00390000006950.n #17	ENSGT01030000234633.B.a	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220.i #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124	ENSGT00940000155020 #32	ENSGT01100000263481.n.a.a.a.b.a.a.a.a.b.a.b.b.a.b.b	ENSGT00940000159325 #33	ENSGT00950000182982.A #34	ENSGT00390000017580.fb.a #35	ENSGT00940000154742.a #36	ENSGT00390000007058 #37	ENSGT00940000154639
Hybrid Bos Indicus	MODERN SPECIES	16	CETN1 (ENSBIXG00005001842) #8	CLUL1 (ENSBIXG00005014105) #9	TYMS (ENSBIXG00005001829) #10	ENOSF1 (ENSBIXG00005014007) #11	YES1 (ENSBIXG00005013763) #12	ADCYAP1 (ENSBIXG00005013724) #13	ENSBIXG00005013699	METTL4 (ENSBIXG00005013634) #15	NDC80 (ENSBIXG00005007711) #16	SMCHD1 (ENSBIXG00005013581) #17	EMILIN2 (ENSBIXG00005013554)	LPIN2 (ENSBIXG00005013528) #18	MYOM1 (ENSBIXG00005013491) #19	MYL12A (ENSBIXG00005013437) #20	MYL12B (ENSBIXG00005007006) #21	TGIF1 (ENSBIXG00005006727) #22	DLGAP1 (ENSBIXG00005013290) #23	AKAIN1 (ENSBIXG00005012720) #25	ZBTB14 (ENSBIXG00005012690) #26	EPB41L3 (ENSBIXG00005012607) #27	ENSBIXG00005012473	TMEM200C (ENSBIXG00005005828) #28	ARHGAP28 (ENSBIXG00005012393) #30	LAMA1 (ENSBIXG00005011945)	PTPRM (ENSBIXG00005011755) #32	ENSBIXG00005006785	RAB12 (ENSBIXG00005011412) #33	MTCL1 (ENSBIXG00005011362) #34	ENSBIXG00005011194 #35	ANKRD12 (ENSBIXG00005007098) #36	TWSG1 (ENSBIXG00005001011) #37
Cow	MODERN SPECIES	16	COLEC12 (ENSBTAG00000007705) #7	CETN1 (ENSBTAG00000012320) #8	CLUL1 (ENSBTAG00000014012) #9	TYMS (ENSBTAG00000007003) #10	ENOSF1 (ENSBTAG00000007000) #11	YES1 (ENSBTAG00000001523) #12	ADCYAP1 (ENSBTAG00000020650) #13	METTL4 (ENSBTAG00000021668) #15	NDC80 (ENSBTAG00000021673) #16	SMCHD1 (ENSBTAG00000003354) #17	EMILIN2 (ENSBTAG00000003880)	LPIN2 (ENSBTAG00000012060) #18	MYOM1 (ENSBTAG00000019585) #19	MYL12A (ENSBTAG00000016024) #20	MYL12B (ENSBTAG00000026266) #21	TGIF1 (ENSBTAG00000007718) #22	DLGAP1 (ENSBTAG00000005372) #23	ENSBTAG00000053533	ZBTB14 (ENSBTAG00000038970) #26	EPB41L3 (ENSBTAG00000019251) #27	TMEM200C (ENSBTAG00000046396) #28	ARHGAP28 (ENSBTAG00000019036) #30	LAMA1 (ENSBTAG00000018160)	LRRC30 (ENSBTAG00000046046)	ENSBTAG00000048323	PTPRM (ENSBTAG00000024015) #32	RAB12 (ENSBTAG00000010356) #33	MTCL1 (ENSBTAG00000009459) #34	NDUFV2 (ENSBTAG00000004871) #35	ANKRD12 (ENSBTAG00000002755) #36	TWSG1 (ENSBTAG00000001805) #37
American bison	MODERN SPECIES	2731							METTL4 (ENSBBBG00000015068) #15	NDC80 (ENSBBBG00000000795) #16	SMCHD1 (ENSBBBG00000003527) #17	EMILIN2 (ENSBBBG00000015217)	LPIN2 (ENSBBBG00000015266) #18	ENSBBBG00000015278	MYOM1 (ENSBBBG00000015361) #19	MYL12A (ENSBBBG00000015416) #20	MYL12B (ENSBBBG00000015444) #21	TGIF1 (ENSBBBG00000015487) #22	ENSBBBG00000015493	ENSBBBG00000015722 #23
Siberian musk deer	MODERN SPECIES	132								METTL4 (ENSMMSG00000009203) #15	ENSMMSG00000009166	NDC80 (ENSMMSG00000009103) #16	SMCHD1 (ENSMMSG00000008985) #17	EMILIN2 (ENSMMSG00000008939)	LPIN2 (ENSMMSG00000008712) #18	MYOM1 (ENSMMSG00000016741) #19	MYL12A (ENSMMSG00000016648) #20	TGIF1 (ENSMMSG00000016578) #22	ENSMMSG00000016560	DLGAP1 (ENSMMSG00000015330) #23	ENSMMSG00000015226	AKAIN1 (ENSMMSG00000015213) #25	ZBTB14 (ENSMMSG00000015196) #26	EPB41L3 (ENSMMSG00000015156) #27	TMEM200C (ENSMMSG00000015145) #28	ARHGAP28 (ENSMMSG00000014590) #30	LAMA1 (ENSMMSG00000014407)	LRRC30 (ENSMMSG00000014378) #31	PTPRM (ENSMMSG00000014281) #32	ENSMMSG00000014263	ENSMMSG00000014253	RAB12 (ENSMMSG00000014211) #33	MTCL1 (ENSMMSG00000014119) #34