Sarcopterygii	ANCESTRAL SPECIES	3	ENSGT01030000234517.A	ENSGT00390000009615	ENSGT00390000016232	ENSGT00950000183074.A #7	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000006950 #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607 #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00940000166801	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00530000063770.d	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00940000166845	ENSGT00390000017580 #37
Tetrapoda	ANCESTRAL SPECIES	1	ENSGT01030000234517.A	ENSGT00390000009615	ENSGT00390000016232	ENSGT00950000183074.A #7	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000006950 #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607 #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00940000166801	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00530000063770.d	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00940000166845	ENSGT00390000017580 #37
Amniota	ANCESTRAL SPECIES	3	ENSGT00950000183074.A #7	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.d ##21	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00940000166801	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00530000063770.d	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37
Mammalia	ANCESTRAL SPECIES	3	ENSGT00950000183074.A #7	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.d ##21	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00940000166801	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00530000063770.d	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37
Theria	ANCESTRAL SPECIES	7	ENSGT00390000016232	ENSGT00950000183074.A #7	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00940000166801	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00530000063770.d	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37
Eutheria	ANCESTRAL SPECIES	20	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00530000063770.d	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a
Boreoeutheria	ANCESTRAL SPECIES	22	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00530000063770.d	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37
Euarchontoglires	ANCESTRAL SPECIES	22	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00530000063770.d	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37
Primates	ANCESTRAL SPECIES	24	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a
Haplorrhini	ANCESTRAL SPECIES	25	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a
Simiiformes	DUPLICATION
Simiiformes	ANCESTRAL SPECIES	24	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00940000165544	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230.fd #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580.`b #37	ENSGT00940000154742.a
Catarrhini	ANCESTRAL SPECIES	23	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00510000047760.y.b	ENSGT00950000183154.b.a.b #13	ENSGT00940000165544	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230.fd #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00910000146973	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580.`b #37
Cercopithecidae	ANCESTRAL SPECIES	25	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920.j #12	ENSGT00510000047760.y.b	ENSGT00940000154920.i.b ##12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00910000148828	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230.fd #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00940000165227	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00910000146973	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36
Cercopithecinae	ANCESTRAL SPECIES	22	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920.j #12	ENSGT00510000047760.y.b	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00910000148828	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230.fd #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00940000165227	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00910000146973	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36
Vervet Monkey	MODERN SPECIES	9	COLEC12 (ENSCSAG00000017628) #7	CETN1 (ENSCSAG00000018575) #8	CLUL1 (ENSCSAG00000017625) #9	TYMS (ENSCSAG00000017621) #10	ENOSF1 (ENSCSAG00000017620) #11	YES1 (ENSCSAG00000017618) #12	ENSCSAG00000017615 #13	METTL4 (ENSCSAG00000017613) #14	NDC80 (ENSCSAG00000017610) #15	SMCHD1 (ENSCSAG00000017608) #16	EMILIN2 (ENSCSAG00000017605) #17	LPIN2 (ENSCSAG00000017604) #18	MYOM1 (ENSCSAG00000017602) #19	MYL12A (ENSCSAG00000017601) #20	MYL12B (ENSCSAG00000017599) #21	TGIF1 (ENSCSAG00000017597) #22	DLGAP1 (ENSCSAG00000017596) #23	ENSCSAG00000017594 #24	AKAIN1 (ENSCSAG00000017591) #25	ZBTB14 (ENSCSAG00000017588) #26	EPB41L3 (ENSCSAG00000017587) #27	TMEM200C (ENSCSAG00000018576) #28	L3MBTL4 (ENSCSAG00000017582) #29	ARHGAP28 (ENSCSAG00000017578) #30	ENSCSAG00000017577 #31	ENSCSAG00000017573 #32	LRRC30 (ENSCSAG00000018577) #33	PTPRM (ENSCSAG00000017571) #34	RAB12 (ENSCSAG00000017569) #35	MTCL1 (ENSCSAG00000017568) #36	NDUFV2 (ENSCSAG00000017564) #37
Cercopithecinae_a	ANCESTRAL SPECIES	21	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920.j #12	ENSGT00510000047760.y.b	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT01030000234866	ENSGT00940000154982 #19	ENSGT00910000148828	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230.fd #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00940000165227	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00910000146973	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36
Macaca	ANCESTRAL SPECIES	22	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920.j #12	ENSGT00510000047760.y.b	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT01030000234866	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000155230.fd #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00940000165227	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00910000146973	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36
Macaca_a	ANCESTRAL SPECIES	21	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920.j #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT01030000234866	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000155230.fd #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT01030000240171	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580.ab ##37	ENSGT00940000154576.j
Crab-eating macaque	MODERN SPECIES	9	CLUL1 (ENSMFAG00000038811) #9	TYMS (ENSMFAG00000039357) #10	ENOSF1 (ENSMFAG00000031046) #11	YES1 (ENSMFAG00000003203) #12	ADCYAP1 (ENSMFAG00000050015) #13	ENSMFAG00000052217	METTL4 (ENSMFAG00000046183) #14	NDC80 (ENSMFAG00000001170) #15	SMCHD1 (ENSMFAG00000038628) #16	ENSMFAG00000056542	EMILIN2 (ENSMFAG00000037105) #17	LPIN2 (ENSMFAG00000038540) #18	ENSMFAG00000044192	MYOM1 (ENSMFAG00000041420) #19	MYL12A (ENSMFAG00000036992) #20	TGIF1 (ENSMFAG00000003221) #22	DLGAP1 (ENSMFAG00000031490) #23	ENSMFAG00000065343	AKAIN1 (ENSMFAG00000031861) #25	ENSMFAG00000057315	ZBTB14 (ENSMFAG00000031970) #26	EPB41L3 (ENSMFAG00000032905) #27	ENSMFAG00000052294	L3MBTL4 (ENSMFAG00000041924) #29	ARHGAP28 (ENSMFAG00000003744) #30	LAMA1 (ENSMFAG00000007292) #32	LRRC30 (ENSMFAG00000028007) #33	PTPRM (ENSMFAG00000002650) #34	ENSMFAG00000053616	RAB12 (ENSMFAG00000043551) #35	MTCL1 (ENSMFAG00000044143) #36
Rhesus	MODERN SPECIES	9	YES1 (ENSMMUG00000004054) #12	ENSMMUG00000057387	ADCYAP1 (ENSMMUG00000062768) #13	ENSMMUG00000063067	METTL4 (ENSMMUG00000018950) #14	NDC80 (ENSMMUG00000018952) #15	ENSMMUG00000053753	SMCHD1 (ENSMMUG00000005461) #16	EMILIN2 (ENSMMUG00000017546) #17	LPIN2 (ENSMMUG00000017548) #18	ENSMMUG00000061540	MYOM1 (ENSMMUG00000019892) #19	MYL12B (ENSMMUG00000019893) ##21	ENSMMUG00000063593	ENSMMUG00000063768	TGIF1 (ENSMMUG00000005086) #22	DLGAP1 (ENSMMUG00000001471) #23	AKAIN1 (ENSMMUG00000059913) #25	ENSMMUG00000058439	ZBTB14 (ENSMMUG00000022005) #26	EPB41L3 (ENSMMUG00000019418) #27	TMEM200C (ENSMMUG00000055350) #28	L3MBTL4 (ENSMMUG00000016302) #29	ARHGAP28 (ENSMMUG00000014506) #30	ENSMMUG00000011408 #32	ENSMMUG00000062466	LRRC30 (ENSMMUG00000049108) #33	PTPRM (ENSMMUG00000000768) #34	RAB12 (ENSMMUG00000062113) #35	MTCL1 (ENSMMUG00000015761) #36	NDUFV2 (ENSMMUG00000049556) ##37
Pig-tailed macaque	MODERN SPECIES	554								METTL4 (ENSMNEG00000027723) #14	NDC80 (ENSMNEG00000031557) #15	SMCHD1 (ENSMNEG00000030716) #16	EMILIN2 (ENSMNEG00000032507) #17	LPIN2 (ENSMNEG00000035359) #18	ENSMNEG00000027836	MYOM1 (ENSMNEG00000029047) #19	MYL12A (ENSMNEG00000041223) #20	TGIF1 (ENSMNEG00000035101) #22	DLGAP1 (ENSMNEG00000036526) #23	ENSMNEG00000033878	ENSMNEG00000045453	AKAIN1 (ENSMNEG00000031689) #25	ZBTB14 (ENSMNEG00000040776) #26	EPB41L3 (ENSMNEG00000041544) #27	TMEM200C (ENSMNEG00000009357) #28	L3MBTL4 (ENSMNEG00000036243) #29	ARHGAP28 (ENSMNEG00000043678) #30	ENSMNEG00000002106	ENSMNEG00000044993	LAMA1 (ENSMNEG00000039096) #32	LRRC30 (ENSMNEG00000013340) #33	PTPRM (ENSMNEG00000033386) #34	RAB12 (ENSMNEG00000040853) #35
Cercopithecinae_b	ANCESTRAL SPECIES	25	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920.j #12	ENSGT00510000047760.y.b	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT01030000234866	ENSGT00940000154982 #19	ENSGT00910000148828	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230.fd #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00940000165227	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00910000146973	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36
Olive baboon	MODERN SPECIES	10	CLUL1 (ENSPANG00000023232) #9	TYMS (ENSPANG00000016982) #10	ENOSF1 (ENSPANG00000019754) #11	YES1 (ENSPANG00000005606) #12	ADCYAP1 (ENSPANG00000042268) #13	ENSPANG00000051273	METTL4 (ENSPANG00000021862) #14	NDC80 (ENSPANG00000003124) #15	SMCHD1 (ENSPANG00000021485) #16	EMILIN2 (ENSPANG00000003125) #17	ENSPANG00000041277	LPIN2 (ENSPANG00000010436) #18	MYOM1 (ENSPANG00000001638) #19	MYL12A (ENSPANG00000014852) #20	ENSPANG00000045052 ##21	TGIF1 (ENSPANG00000012318) #22	DLGAP1 (ENSPANG00000019969) #23	ENSPANG00000042694	AKAIN1 (ENSPANG00000009807) #25	ZBTB14 (ENSPANG00000003128) #26	EPB41L3 (ENSPANG00000006867) #27	TMEM200C (ENSPANG00000007851) #28	L3MBTL4 (ENSPANG00000008894) #29	ENSPANG00000044570 #30	ENSPANG00000019970 #32	LRRC30 (ENSPANG00000003355) #33	PTPRM (ENSPANG00000005610) #34	RAB12 (ENSPANG00000009320) #35	MTCL1 (ENSPANG00000011897) #36	ENSPANG00000049362	ENSPANG00000009266
Cercopithecinae_d	ANCESTRAL SPECIES	40	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920.j #12	ENSGT00510000047760.y.b	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00910000148828	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230.fd #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00940000165227	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29
Drill	MODERN SPECIES	1203	TYMS (ENSMLEG00000033083) #10	ENOSF1 (ENSMLEG00000029800) #11	YES1 (ENSMLEG00000033031) #12	ENSMLEG00000038566	ADCYAP1 (ENSMLEG00000041063) #13	METTL4 (ENSMLEG00000036729) #14	NDC80 (ENSMLEG00000034205) #15	SMCHD1 (ENSMLEG00000042656) #16	EMILIN2 (ENSMLEG00000041789) #17	LPIN2 (ENSMLEG00000039895) #18	ENSMLEG00000039724	MYOM1 (ENSMLEG00000031580) #19	MYL12A (ENSMLEG00000027689) #20	MYL12B (ENSMLEG00000022144) #21	ENSMLEG00000033712	TGIF1 (ENSMLEG00000044111) #22	ENSMLEG00000021320	ENSMLEG00000034137	DLGAP1 (ENSMLEG00000033071) #23	ENSMLEG00000031857	AKAIN1 (ENSMLEG00000009942) #25	ZBTB14 (ENSMLEG00000033334) #26	EPB41L3 (ENSMLEG00000042882) #27
Sooty mangabey	MODERN SPECIES	628	CLUL1 (ENSCATG00000045077) #9	TYMS (ENSCATG00000030133) #10	ENOSF1 (ENSCATG00000034332) #11	YES1 (ENSCATG00000036813) #12	ENSCATG00000029055	ADCYAP1 (ENSCATG00000039535) #13	METTL4 (ENSCATG00000011642) #14	NDC80 (ENSCATG00000030394) #15	SMCHD1 (ENSCATG00000042044) #16	EMILIN2 (ENSCATG00000032093) #17	LPIN2 (ENSCATG00000037884) #18	MYOM1 (ENSCATG00000018194) #19	ENSCATG00000041600	MYL12A (ENSCATG00000041341) #20	MYL12B (ENSCATG00000031984) #21	TGIF1 (ENSCATG00000000628) #22	DLGAP1 (ENSCATG00000017819) #23	ENSCATG00000030025	ENSCATG00000039667	AKAIN1 (ENSCATG00000023216) #25	ZBTB14 (ENSCATG00000038080) #26	EPB41L3 (ENSCATG00000035372) #27	ENSCATG00000019635	TMEM200C (ENSCATG00000020387) #28	L3MBTL4 (ENSCATG00000035692) #29
Rhinopithecus	ANCESTRAL SPECIES	448						ENSGT01030000234606.a.a.a.a	ENSGT00530000063596.B	ENSGT00940000159481	ENSGT00940000159230	ENSGT00940000156092	ENSGT00940000157336	ENSGT00950000182843.a.a.a.a	ENSGT00940000157393	ENSGT00390000004927	ENSGT00940000153607.c.b #21	ENSGT00940000155230.fd #22
Black snub-nosed monkey	MODERN SPECIES	599												LPIN2 (ENSRBIG00000032868) #18	MYOM1 (ENSRBIG00000034307) #19	MYL12A (ENSRBIG00000003046) #20	MYL12B (ENSRBIG00000034511) #21	TGIF1 (ENSRBIG00000023893) #22
Golden snub-nosed monkey	MODERN SPECIES	2831							METTL4 (ENSRROG00000032893) #14	NDC80 (ENSRROG00000040588) #15	SMCHD1 (ENSRROG00000036215) #16	EMILIN2 (ENSRROG00000043099) #17	LPIN2 (ENSRROG00000034072) #18	MYOM1 (ENSRROG00000032442) #19	ENSRROG00000029308	MYL12A (ENSRROG00000043381) #20	MYL12B (ENSRROG00000017363) #21	TGIF1 (ENSRROG00000036088) #22	DLGAP1 (ENSRROG00000033265) #23	ENSRROG00000038371	ENSRROG00000005640	ENSRROG00000035268	ENSRROG00000030024
Hominoidea	ANCESTRAL SPECIES	24	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00510000047760.y.b	ENSGT00950000183154.b.a.b #13	ENSGT00940000165544	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230.fd #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00910000146973	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580.`b #37
Gibbon	MODERN SPECIES	19	CLUL1 (ENSNLEG00000006850) #9	ENSNLEG00000006854 #10	ENOSF1 (ENSNLEG00000030293) #11	YES1 (ENSNLEG00000006863) #12	ADCYAP1 (ENSNLEG00000006864) #13	ENSNLEG00000029289	METTL4 (ENSNLEG00000006868) #14	NDC80 (ENSNLEG00000006870) #15	SMCHD1 (ENSNLEG00000006877) #16	EMILIN2 (ENSNLEG00000006882) #17	LPIN2 (ENSNLEG00000006886) #18	ENSNLEG00000032827	MYOM1 (ENSNLEG00000006889) #19	MYL12A (ENSNLEG00000026933) #20	MYL12B (ENSNLEG00000032335) #21	ENSNLEG00000028451 #22	DLGAP1 (ENSNLEG00000006910) #23	ENSNLEG00000035249	ENSNLEG00000006916	AKAIN1 (ENSNLEG00000028125) #25	ZBTB14 (ENSNLEG00000006918) #26	EPB41L3 (ENSNLEG00000006919) #27	TMEM200C (ENSNLEG00000006924) #28	L3MBTL4 (ENSNLEG00000006925) #29	ARHGAP28 (ENSNLEG00000006927) #30	LAMA1 (ENSNLEG00000006930) #32	LRRC30 (ENSNLEG00000018547) #33	PTPRM (ENSNLEG00000006934) #34	ENSNLEG00000006939 #35	MTCL1 (ENSNLEG00000006940) #36	NDUFV2 (ENSNLEG00000006944) #37
Hominidae	ANCESTRAL SPECIES	24	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00510000047760.y.b	ENSGT00950000183154.b.a.b #13	ENSGT00940000165544	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230.fd #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00910000146973	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580.ab ##37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	26	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00510000047760.y.b	ENSGT00950000183154.b.a.b #13	ENSGT00940000165544	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230.fd #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00910000146973	ENSGT00940000157124 #32	ENSGT00940000155622.e.a.a	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36
Homo/Pan group	ANCESTRAL SPECIES	25	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00510000047760.y.b	ENSGT00950000183154.b.a.b #13	ENSGT00940000165544	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230.fd #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00910000146973	ENSGT00940000157124 #32	ENSGT00940000155622.e.a.a	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36
Pan	ANCESTRAL SPECIES	24	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00510000047760.y.b	ENSGT00950000183154.b.a.b #13	ENSGT00940000165544	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000154174.t	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230.fd #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00910000146973	ENSGT00940000157124 #32	ENSGT00940000155622.e.a.a	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36
Chimpanzee	MODERN SPECIES	9	TYMS (ENSPTRG00000009822) #10	ENOSF1 (ENSPTRG00000009823) #11	YES1 (ENSPTRG00000009824) #12	ENSPTRG00000048401	ADCYAP1 (ENSPTRG00000009825) #13	ENSPTRG00000050092	METTL4 (ENSPTRG00000009828) #14	NDC80 (ENSPTRG00000009829) #15	SMCHD1 (ENSPTRG00000009831) #16	EMILIN2 (ENSPTRG00000009832) #17	ENSPTRG00000048371	LPIN2 (ENSPTRG00000009833) #18	MYOM1 (ENSPTRG00000009834) #19	MYL12A (ENSPTRG00000009835) #20	MYL12B (ENSPTRG00000009836) #21	TGIF1 (ENSPTRG00000009838) #22	ENSPTRG00000044604	DLGAP1 (ENSPTRG00000009839) #23	AKAIN1 (ENSPTRG00000052521) #25	ZBTB14 (ENSPTRG00000029352) #26	EPB41L3 (ENSPTRG00000009844) #27	TMEM200C (ENSPTRG00000029353) #28	L3MBTL4 (ENSPTRG00000009845) #29	ARHGAP28 (ENSPTRG00000009847) #30	ENSPTRG00000050179	LAMA1 (ENSPTRG00000009849) #32	LRRC30 (ENSPTRG00000029358) #33	PTPRM (ENSPTRG00000009851) #34	RAB12 (ENSPTRG00000009853) #35	MTCL1 (ENSPTRG00000009854) #36	NDUFV2 (ENSPTRG00000009856) ##37
Bonobo	MODERN SPECIES	9	CEP192 (ENSPPAG00000023155)	ENSPPAG00000039572	YES1 (ENSPPAG00000038900) #12	ENSPPAG00000042949	ADCYAP1 (ENSPPAG00000031943) #13	ENSPPAG00000032374	METTL4 (ENSPPAG00000030467) #14	NDC80 (ENSPPAG00000041112) #15	SMCHD1 (ENSPPAG00000037346) #16	EMILIN2 (ENSPPAG00000026444) #17	ENSPPAG00000043766	LPIN2 (ENSPPAG00000036687) #18	MYOM1 (ENSPPAG00000037926) #19	MYL12A (ENSPPAG00000037395) #20	MYL12B (ENSPPAG00000016699) #21	ENSPPAG00000034209 #22	ENSPPAG00000036002	DLGAP1 (ENSPPAG00000032706) #23	ENSPPAG00000030574 #25	ZBTB14 (ENSPPAG00000023957) #26	EPB41L3 (ENSPPAG00000031576) #27	TMEM200C (ENSPPAG00000026280) #28	ENSPPAG00000017617 #29	ARHGAP28 (ENSPPAG00000027220) #30	ENSPPAG00000041462	LAMA1 (ENSPPAG00000031074) #32	ENSPPAG00000029118	LRRC30 (ENSPPAG00000032601) #33	PTPRM (ENSPPAG00000022548) #34	ENSPPAG00000009152 #35	MTCL1 (ENSPPAG00000034933) #36
Human	MODERN SPECIES	9	COLEC12 (ENSG00000158270) #7	CETN1 (ENSG00000177143) #8	CLUL1 (ENSG00000079101) #9	TYMS (ENSG00000176890) #10	ENOSF1 (ENSG00000132199) #11	YES1 (ENSG00000176105) #12	ADCYAP1 (ENSG00000141433) #13	METTL4 (ENSG00000101574) #14	NDC80 (ENSG00000080986) #15	SMCHD1 (ENSG00000101596) #16	EMILIN2 (ENSG00000132205) #17	LPIN2 (ENSG00000101577) #18	MYOM1 (ENSG00000101605) #19	MYL12A (ENSG00000101608) #20	MYL12B (ENSG00000118680) #21	TGIF1 (ENSG00000177426) #22	DLGAP1 (ENSG00000170579) #23	AKAIN1 (ENSG00000231824) #25	ZBTB14 (ENSG00000198081) #26	EPB41L3 (ENSG00000082397) #27	TMEM200C (ENSG00000206432) #28	L3MBTL4 (ENSG00000154655) #29	ARHGAP28 (ENSG00000088756) #30	LAMA1 (ENSG00000101680) #32	LRRC30 (ENSG00000206422) #33	PTPRM (ENSG00000173482) #34	RAB12 (ENSG00000206418) #35	MTCL1 (ENSG00000168502) #36	NDUFV2 (ENSG00000178127) #37	ANKRD12 (ENSG00000101745)	TWSG1 (ENSG00000128791)
Gorilla	MODERN SPECIES	9	CLUL1 (ENSGGOG00000001325) #9	TYMS (ENSGGOG00000014000) #10	ENOSF1 (ENSGGOG00000009826) #11	YES1 (ENSGGOG00000000651) #12	ENSGGOG00000027261	ADCYAP1 (ENSGGOG00000036843) #13	ENSGGOG00000009010	METTL4 (ENSGGOG00000000937) #14	NDC80 (ENSGGOG00000000939) #15	SMCHD1 (ENSGGOG00000017005) #16	EMILIN2 (ENSGGOG00000000329) #17	LPIN2 (ENSGGOG00000000330) #18	MYOM1 (ENSGGOG00000044057) #19	MYL12A (ENSGGOG00000011429) #20	MYL12B (ENSGGOG00000004051) #21	ENSGGOG00000012694 #22	DLGAP1 (ENSGGOG00000034891) #23	AKAIN1 (ENSGGOG00000040105) #25	ZBTB14 (ENSGGOG00000024397) #26	EPB41L3 (ENSGGOG00000012450) #27	ENSGGOG00000026491 #28	L3MBTL4 (ENSGGOG00000015056) #29	ARHGAP28 (ENSGGOG00000000529) #30	ENSGGOG00000042094	LAMA1 (ENSGGOG00000016323) #32	ENSGGOG00000042265	LRRC30 (ENSGGOG00000028005) #33	PTPRM (ENSGGOG00000003702) #34	ENSGGOG00000002654 #35	MTCL1 (ENSGGOG00000016277) #36	ENSGGOG00000028489 ##37
Orangutan	MODERN SPECIES	9	CLUL1 (ENSPPYG00000009046) #9	TYMS (ENSPPYG00000009045) #10	ENOSF1 (ENSPPYG00000009044) #11	YES1 (ENSPPYG00000009043) #12	ADCYAP1 (ENSPPYG00000041262) #13	ENSPPYG00000032286	ENSPPYG00000009000	METTL4 (ENSPPYG00000009040) #14	NDC80 (ENSPPYG00000009039) #15	SMCHD1 (ENSPPYG00000009037) #16	ENSPPYG00000035335	LPIN2 (ENSPPYG00000009036) #18	MYOM1 (ENSPPYG00000009034) #19	MYL12A (ENSPPYG00000009033) #20	MYL12B (ENSPPYG00000009032) #21	ENSPPYG00000009030 #22	DLGAP1 (ENSPPYG00000009027) #23	AKAIN1 (ENSPPYG00000037539) #25	ZBTB14 (ENSPPYG00000009025) #26	EPB41L3 (ENSPPYG00000009024) #27	TMEM200C (ENSPPYG00000009023) #28	L3MBTL4 (ENSPPYG00000009022) #29	ARHGAP28 (ENSPPYG00000009021) #30	LAMA1 (ENSPPYG00000009019) #32	LRRC30 (ENSPPYG00000009018) #33	PTPRM (ENSPPYG00000009016) #34	RAB12 (ENSPPYG00000009015) #35	MTCL1 (ENSPPYG00000009014) #36	NDUFV2 (ENSPPYG00000009013) #37	ENSPPYG00000033372	ANKRD12 (ENSPPYG00000009012)
Platyrrhini	DUPLICATION
Platyrrhini	ANCESTRAL SPECIES	26	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786.w #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00940000165544	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230.fd.a #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a.f #26	ENSGT00940000157047.i #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580.`b #37	ENSGT00940000154742.a	ENSGT00390000007058
Cebidae	ANCESTRAL SPECIES	28	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786.w #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00940000165544	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230.fd.a #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a.f #26	ENSGT00940000157047.i #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580.ab ##37	ENSGT00940000154742.a	ENSGT00390000007058
Marmoset	MODERN SPECIES	4	ADCYAP1 (ENSCJAG00000045833) #13	ENSCJAG00000045947	ENSCJAG00000062931	METTL4 (ENSCJAG00000000092) #14	NDC80 (ENSCJAG00000000078) #15	ENSCJAG00000000071 #16	ENSCJAG00000043001	ENSCJAG00000053051	ENSCJAG00000070355	EMILIN2 (ENSCJAG00000012955) #17	LPIN2 (ENSCJAG00000012946) #18	MYOM1 (ENSCJAG00000012917) #19	ENSCJAG00000012890 ##21	MYL12B (ENSCJAG00000080160) #21	ENSCJAG00000040414	ENSCJAG00000012865 #22	DLGAP1 (ENSCJAG00000012856) #23	ENSCJAG00000076723	ENSCJAG00000049819 #16	ENSCJAG00000080148	ENSCJAG00000080111	ENSCJAG00000064609	ENSCJAG00000085054	AKAIN1 (ENSCJAG00000042385) #25	ZBTB14 (ENSCJAG00000048541) #26	ENSCJAG00000015728 #27	ENSCJAG00000081743	ENSCJAG00000085204	TMEM200C (ENSCJAG00000038374) #28	L3MBTL4 (ENSCJAG00000015716) #29	ENSCJAG00000023104
Cebidae_a	ANCESTRAL SPECIES	23	ENSGT00390000014786.w #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00940000165544	ENSGT00390000016237 #14	ENSGT00530000063169.b.b	ENSGT00390000010218.e.b	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230.fd.a #22	ENSGT00910000148299	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a.f #26	ENSGT00940000157047.i #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580.`b #37	ENSGT00940000154742.a.o
Capuchin	MODERN SPECIES	41							METTL4 (ENSCCAG00000020235) #14	ENSCCAG00000033549	NDC80 (ENSCCAG00000032553) #15	SMCHD1 (ENSCCAG00000030527) #16	EMILIN2 (ENSCCAG00000029681) #17	LPIN2 (ENSCCAG00000035561) #18	MYOM1 (ENSCCAG00000022741) #19	MYL12A (ENSCCAG00000029033) #20	MYL12B (ENSCCAG00000013854) #21	TGIF1 (ENSCCAG00000027574) #22	HUNK (ENSCCAG00000028641)	YPEL (ENSCCAG00000001926)	MRAP (ENSCCAG00000037447)	URB1 (ENSCCAG00000021299)	EVA1C (ENSCCAG00000021119)	CFAP298 (ENSCCAG00000027358)	SYNJ1 (ENSCCAG00000020825)	ENSCCAG00000022424	PAXBP1 (ENSCCAG00000020942)	C21orf62 (ENSCCAG00000037763)	OLIG2 (ENSCCAG00000024351)	OLIG1 (ENSCCAG00000010149)	IFNAR2 (ENSCCAG00000022451)	IL10RB (ENSCCAG00000030174)	IFNAR1 (ENSCCAG00000025224)
Bolivian squirrel monkey	MODERN SPECIES	53	COLEC12 (ENSSBOG00000030126) #7	CLUL1 (ENSSBOG00000035239) #9	TYMS (ENSSBOG00000021422) #10	ENOSF1 (ENSSBOG00000035498) #11	YES1 (ENSSBOG00000034837) #12	ADCYAP1 (ENSSBOG00000028158) #13	ENSSBOG00000025141	METTL4 (ENSSBOG00000033623) #14	NDC80 (ENSSBOG00000035772) #15	SMCHD1 (ENSSBOG00000030266) #16	EMILIN2 (ENSSBOG00000029862) #17	LPIN2 (ENSSBOG00000026923) #18	MYOM1 (ENSSBOG00000036143) #19	MYL12A (ENSSBOG00000019169) #20	ENSSBOG00000022177 #21	TGIF1 (ENSSBOG00000036056) #22	DLGAP1 (ENSSBOG00000031193) #23	ENSSBOG00000031178	ENSSBOG00000035366	AKAIN1 (ENSSBOG00000031954) #25	ZBTB14 (ENSSBOG00000034371) #26	EPB41L3 (ENSSBOG00000024756) #27	ENSSBOG00000025802	TMEM200C (ENSSBOG00000034209) #28	L3MBTL4 (ENSSBOG00000023649) #29	ARHGAP28 (ENSSBOG00000031680) #30	ENSSBOG00000036132	LAMA1 (ENSSBOG00000033137) #32	ENSSBOG00000018693	LRRC30 (ENSSBOG00000009092) #33	PTPRM (ENSSBOG00000035977) #34
Mas night monkey	MODERN SPECIES	627				ENSANAG00000022662	METTL4 (ENSANAG00000028394) #14	ENSANAG00000022861	NDC80 (ENSANAG00000026423) #15	SMCHD1 (ENSANAG00000035458) #16	ENSANAG00000023466	EMILIN2 (ENSANAG00000033716) #17	LPIN2 (ENSANAG00000034006) #18	MYOM1 (ENSANAG00000023556) #19	ENSANAG00000019883 #20	MYL12B (ENSANAG00000028363) #21	ENSANAG00000029379	TGIF1 (ENSANAG00000020401) #22	ENSANAG00000037343	DLGAP1 (ENSANAG00000021635) #23	ENSANAG00000007877	AKAIN1 (ENSANAG00000025419) #25	ENSANAG00000035293 #26	EPB41L3 (ENSANAG00000020372) #27	ENSANAG00000035230	TMEM200C (ENSANAG00000023265) #28	L3MBTL4 (ENSANAG00000025058) #29	ARHGAP28 (ENSANAG00000036554) #30	LAMA1 (ENSANAG00000028013) #32	LRRC30 (ENSANAG00000020024) #33	PTPRM (ENSANAG00000034856) #34	RAB12 (ENSANAG00000021061) #35	MTCL1 (ENSANAG00000014340) #36
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00940000155230.fd.b #22
Cebidae	ANCESTRAL SPECIES																	ENSGT00940000155230.fd.b #22
Marmoset	MODERN SPECIES	1	GPR176 (ENSCJAG00000020926)	FSIP1 (ENSCJAG00000020927)	THBS1 (ENSCJAG00000020936)	ENSCJAG00000077457	ENSCJAG00000075593	ENSCJAG00000068940	RASGRP1 (ENSCJAG00000020961)	FAM98B (ENSCJAG00000069791)	SPRED1 (ENSCJAG00000038730)	TMCO5A (ENSCJAG00000020986)	MEIS2 (ENSCJAG00000020992)	CDIN1 (ENSCJAG00000021003)	ENSCJAG00000074596	DPH6 (ENSCJAG00000021006)	ENSCJAG00000023281	ENSCJAG00000061682 #22	ZNF770 (ENSCJAG00000021013)	AQR (ENSCJAG00000021021)	ACTC1 (ENSCJAG00000021047)	GJD2 (ENSCJAG00000067910)	ENSCJAG00000075351	ARHGAP11A (ENSCJAG00000021054)	SCG5 (ENSCJAG00000021060)	GREM1 (ENSCJAG00000073529)	ENSCJAG00000084905	FMN1 (ENSCJAG00000021067)	RYR3 (ENSCJAG00000035611)	AVEN (ENSCJAG00000021101)	CHRM5 (ENSCJAG00000023282)	EMC7 (ENSCJAG00000021103)	PGBD4 (ENSCJAG00000023283)
Simiiformes	ANCESTRAL SPECIES																	ENSGT00940000155230.gd ##22
Catarrhini	ANCESTRAL SPECIES		ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00390000009557.A.b	ENSGT00940000155230.gd ##22	ENSGT00390000009557.A.a	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851
Hominoidea	ANCESTRAL SPECIES		ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT00940000166143.A.a.b.b.b.b.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00390000009557.A.b	ENSGT00940000155230.gd ##22	ENSGT00390000009557.A.a	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851
Gibbon	MODERN SPECIES	7	ENSNLEG00000002792	ENSNLEG00000032967	GNG8 (ENSNLEG00000002788)	PTGIR (ENSNLEG00000002780)	CALM3 (ENSNLEG00000002752)	ENSNLEG00000002751	PNMA8B (ENSNLEG00000002750)	PNMA8A (ENSNLEG00000002749)	PNMA8C (ENSNLEG00000030454)	ENSNLEG00000030898	ENSNLEG00000002747	PPP5C (ENSNLEG00000002629)	HIF3A (ENSNLEG00000002481)	IGFL1 (ENSNLEG00000002458)	ENSNLEG00000002443	ENSNLEG00000032323 ##22	IGFL3 (ENSNLEG00000002440)	IGFL4 (ENSNLEG00000002438)	PGLYRP1 (ENSNLEG00000002422)	CCDC61 (ENSNLEG00000002402)	ENSNLEG00000002399	MYPOP (ENSNLEG00000002401)	IRF2BP1 (ENSNLEG00000018408)	FOXA3 (ENSNLEG00000002392)	SYMPK (ENSNLEG00000002369)	RSPH6A (ENSNLEG00000002328)	DMWD (ENSNLEG00000002321)	DMPK (ENSNLEG00000002298)	ENSNLEG00000002295	MEIOSIN (ENSNLEG00000002294)	ENSNLEG00000031904
Hominidae	ANCESTRAL SPECIES		ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT00940000166143.A.a.b.b.b.b.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00390000009557.A.b	ENSGT00940000155230.gd ##22	ENSGT00390000009557.A.a	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851
Homo/Pan/Gorilla group	ANCESTRAL SPECIES		ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT00940000166143.A.a.b.b.b.b.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785.j	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00390000009557.A.b	ENSGT00940000155230.gd ##22	ENSGT00390000009557.A.a	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851
Homo/Pan group	ANCESTRAL SPECIES		ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT00940000166143.A.a.b.b.b.b.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785.j	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00390000009557.A.b	ENSGT00940000155230.gd ##22	ENSGT00390000009557.A.a	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851
Pan	ANCESTRAL SPECIES	9	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT00940000166143.A.a.b.b.b.b.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785.j	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00390000009557.A.b	ENSGT00940000155230.gd ##22	ENSGT00390000009557.A.a	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237	ENSGT00570000080851
Bonobo	MODERN SPECIES	10	STRN4 (ENSPPAG00000035898)	PRKD2 (ENSPPAG00000037267)	ENSPPAG00000041113	GNG8 (ENSPPAG00000033557)	PTGIR (ENSPPAG00000041949)	CALM3 (ENSPPAG00000037613)	ENSPPAG00000035628	PNMA8B (ENSPPAG00000042091)	PNMA8A (ENSPPAG00000033527)	PNMA8C (ENSPPAG00000008304)	CCDC8 (ENSPPAG00000042195)	PPP5C (ENSPPAG00000038591)	HIF3A (ENSPPAG00000042427)	ENSPPAG00000032796	IGFL2 (ENSPPAG00000029197)	ENSPPAG00000029552 ##22	IGFL3 (ENSPPAG00000022284)	IGFL4 (ENSPPAG00000040782)	PGLYRP1 (ENSPPAG00000039034)	ENSPPAG00000030915	ENSPPAG00000035049	NANOS2 (ENSPPAG00000020568)	MYPOP (ENSPPAG00000017638)	FOXA3 (ENSPPAG00000042745)	SYMPK (ENSPPAG00000043204)	RSPH6A (ENSPPAG00000043932)	DMWD (ENSPPAG00000037733)	DMPK (ENSPPAG00000043247)	ENSPPAG00000037802	MEIOSIN (ENSPPAG00000042669)	FBXO46 (ENSPPAG00000022797)
Chimpanzee	MODERN SPECIES	10	STRN4 (ENSPTRG00000011192)	PRKD2 (ENSPTRG00000011190)	DACT3 (ENSPTRG00000028961)	GNG8 (ENSPTRG00000043557)	PTGIR (ENSPTRG00000011186)	CALM3 (ENSPTRG00000011185)	PPP5D1 (ENSPTRG00000039811)	ENSPTRG00000028962	PNMA8A (ENSPTRG00000011183)	PNMA8C (ENSPTRG00000048654)	CCDC8 (ENSPTRG00000011182)	PPP5C (ENSPTRG00000011181)	HIF3A (ENSPTRG00000011180)	IGFL1 (ENSPTRG00000011179)	IGFL2 (ENSPTRG00000041643)	ENSPTRG00000050670 ##22	IGFL3 (ENSPTRG00000011176)	IGFL4 (ENSPTRG00000051124)	PGLYRP1 (ENSPTRG00000011175)	CCDC61 (ENSPTRG00000039834)	NOVA2 (ENSPTRG00000011173)	NANOS2 (ENSPTRG00000011172)	MYPOP (ENSPTRG00000028972)	IRF2BP1 (ENSPTRG00000011171)	FOXA3 (ENSPTRG00000011170)	SYMPK (ENSPTRG00000011169)	RSPH6A (ENSPTRG00000011168)	DMWD (ENSPTRG00000011165)	DMPK (ENSPTRG00000011166)	SIX5 (ENSPTRG00000033681)	MEIOSIN (ENSPTRG00000041781)
Gorilla	MODERN SPECIES	10	FKRP (ENSGGOG00000043279)	STRN4 (ENSGGOG00000010169)	PRKD2 (ENSGGOG00000010508)	ENSGGOG00000043507	PTGIR (ENSGGOG00000013112)	CALM3 (ENSGGOG00000000212)	ENSGGOG00000024504	ENSGGOG00000015668	PNMA8A (ENSGGOG00000001214)	PNMA8C (ENSGGOG00000040172)	CCDC8 (ENSGGOG00000016630)	PPP5C (ENSGGOG00000007562)	HIF3A (ENSGGOG00000007551)	IGFL1 (ENSGGOG00000011461)	IGFL2 (ENSGGOG00000024074)	ENSGGOG00000028458 ##22	IGFL3 (ENSGGOG00000005560)	IGFL4 (ENSGGOG00000027623)	PGLYRP1 (ENSGGOG00000011126)	ENSGGOG00000011115	NOVA2 (ENSGGOG00000000325)	NANOS2 (ENSGGOG00000013447)	MYPOP (ENSGGOG00000017080)	IRF2BP1 (ENSGGOG00000023972)	FOXA3 (ENSGGOG00000003972)	SYMPK (ENSGGOG00000003410)	RSPH6A (ENSGGOG00000003405)	DMWD (ENSGGOG00000007982)	DMPK (ENSGGOG00000007967)	SIX5 (ENSGGOG00000007958)	BHMG1 (ENSGGOG00000036840)
Orangutan	MODERN SPECIES	10	SLC1A5 (ENSPPYG00000010161)	FKRP (ENSPPYG00000010160)	STRN4 (ENSPPYG00000010159)	PRKD2 (ENSPPYG00000010158)	DACT3 (ENSPPYG00000010157)	PTGIR (ENSPPYG00000010155)	CALM3 (ENSPPYG00000010154)	ENSPPYG00000031172	PNMA8B (ENSPPYG00000010152)	PNMA8A (ENSPPYG00000035419)	PNMA8C (ENSPPYG00000037781)	CCDC8 (ENSPPYG00000010150)	PPP5C (ENSPPYG00000010148)	HIF3A (ENSPPYG00000010147)	IGFL1 (ENSPPYG00000040323)	ENSPPYG00000040668 ##22	IGFL3 (ENSPPYG00000010144)	ENSPPYG00000029912	IGFL4 (ENSPPYG00000010142)	PGLYRP1 (ENSPPYG00000010141)	CCDC61 (ENSPPYG00000010140)	NOVA2 (ENSPPYG00000010139)	NANOS2 (ENSPPYG00000010138)	ENSPPYG00000031914	IRF2BP1 (ENSPPYG00000010136)	FOXA3 (ENSPPYG00000010580)	SYMPK (ENSPPYG00000010135)	RSPH6A (ENSPPYG00000010134)	DMWD (ENSPPYG00000010133)	DMPK (ENSPPYG00000010132)	SIX5 (ENSPPYG00000010131)
Cercopithecidae	ANCESTRAL SPECIES	12	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00390000009557.A.b	ENSGT00940000155230.gd ##22	ENSGT00390000009557.A.a	ENSGT00390000017625.d	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237
Rhinopithecus	ANCESTRAL SPECIES	16	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.B.f	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT00390000015797.c.b.d	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00390000009557.A.b	ENSGT00940000155230.gd ##22	ENSGT00390000009557.A.a	ENSGT00390000017625.d	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237
Golden snub-nosed monkey	MODERN SPECIES	2027	FKRP (ENSRROG00000007497)	STRN4 (ENSRROG00000042099)	PRKD2 (ENSRROG00000034944)	DACT3 (ENSRROG00000044269)	ENSRROG00000045208	PTGIR (ENSRROG00000035701)	CALM3 (ENSRROG00000033594)	ENSRROG00000035990	PNMA8A (ENSRROG00000013610)	PNMA8C (ENSRROG00000027253)	ENSRROG00000038440	PPP5C (ENSRROG00000027318)	HIF3A (ENSRROG00000032780)	IGFL1 (ENSRROG00000029689)	IGFL2 (ENSRROG00000012003)	ENSRROG00000045549 ##22	IGFL3 (ENSRROG00000039749)	ENSRROG00000043631	IGFL4 (ENSRROG00000043261)	PGLYRP1 (ENSRROG00000035762)	CCDC61 (ENSRROG00000032654)	NOVA2 (ENSRROG00000037399)	NANOS2 (ENSRROG00000014903)	MYPOP (ENSRROG00000031078)	IRF2BP1 (ENSRROG00000024812)	FOXA3 (ENSRROG00000041934)	SYMPK (ENSRROG00000024834)	RSPH6A (ENSRROG00000038540)	DMWD (ENSRROG00000036990)	DMPK (ENSRROG00000037325)	SIX5 (ENSRROG00000026145)
Black snub-nosed monkey	MODERN SPECIES	477	SLC1A5 (ENSRBIG00000032793)	STRN4 (ENSRBIG00000030977)	PRKD2 (ENSRBIG00000002509)	ENSRBIG00000037645	GNG8 (ENSRBIG00000040120)	PTGIR (ENSRBIG00000039814)	ENSRBIG00000040350	PNMA8B (ENSRBIG00000043852)	PNMA8A (ENSRBIG00000032652)	PNMA8C (ENSRBIG00000007752)	ENSRBIG00000041650	PPP5C (ENSRBIG00000043486)	HIF3A (ENSRBIG00000037340)	IGFL1 (ENSRBIG00000041594)	IGFL2 (ENSRBIG00000013672)	ENSRBIG00000037692 ##22	ENSRBIG00000041617	ENSRBIG00000026369	IGFL4 (ENSRBIG00000017354)	PGLYRP1 (ENSRBIG00000041217)	CCDC61 (ENSRBIG00000027796)	NANOS2 (ENSRBIG00000023726)	MYPOP (ENSRBIG00000035669)	IRF2BP1 (ENSRBIG00000025631)	FOXA3 (ENSRBIG00000037992)	SYMPK (ENSRBIG00000040963)	RSPH6A (ENSRBIG00000044850)	DMWD (ENSRBIG00000038254)	DMPK (ENSRBIG00000033839)	SIX5 (ENSRBIG00000013549)	MEIOSIN (ENSRBIG00000043746)
Cercopithecinae	ANCESTRAL SPECIES	1	ENSGT00940000159485	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00940000155230.gd ##22	ENSGT00390000009557.A.a	ENSGT00390000017625.d	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237
Cercopithecinae_a	ANCESTRAL SPECIES	3	ENSGT00940000159485	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00940000155230.gd ##22	ENSGT00390000009557.A.a	ENSGT00390000017625.d	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237
Cercopithecinae_b	ANCESTRAL SPECIES	23	ENSGT00940000159485	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.a	ENSGT00940000158785	ENSGT00940000161745	ENSGT00390000009557.C	ENSGT00940000155230.gd ##22	ENSGT00390000009557.A.a	ENSGT00390000017625.d	ENSGT00390000009557.B	ENSGT00940000161006	ENSGT00940000154133.B	ENSGT00940000161740	ENSGT00950000183135.A.a	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000162453	ENSGT00390000017045	ENSGT00500000044869.a.b	ENSGT00390000007686.a	ENSGT00940000162019	ENSGT00940000162237
Olive baboon	MODERN SPECIES	12	STRN4 (ENSPANG00000017664)	PRKD2 (ENSPANG00000008367)	DACT3 (ENSPANG00000021672)	GNG8 (ENSPANG00000029260)	PTGIR (ENSPANG00000019287)	ENSPANG00000015474	PNMA8B (ENSPANG00000039504)	PNMA8A (ENSPANG00000018286)	PNMA8C (ENSPANG00000033741)	CCDC8 (ENSPANG00000020252)	ENSPANG00000029483	PPP5C (ENSPANG00000002966)	HIF3A (ENSPANG00000014598)	ENSPANG00000044504	ENSPANG00000039314	ENSPANG00000038110 ##22	IGFL3 (ENSPANG00000019926)	PGLYRP1 (ENSPANG00000048485)	CCDC61 (ENSPANG00000009365)	NOVA2 (ENSPANG00000023868)	NANOS2 (ENSPANG00000009327)	MYPOP (ENSPANG00000046784)	IRF2BP1 (ENSPANG00000002641)	FOXA3 (ENSPANG00000034535)	SYMPK (ENSPANG00000019930)	RSPH6A (ENSPANG00000011597)	DMWD (ENSPANG00000001288)	DMPK (ENSPANG00000002664)	SIX5 (ENSPANG00000005316)	MEIOSIN (ENSPANG00000018287)	FBXO46 (ENSPANG00000002640)
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00940000155230.gd ##22
Cebidae	ANCESTRAL SPECIES																	ENSGT00940000155230.gd ##22
Marmoset	MODERN SPECIES	17	TNFSF12 (ENSCJAG00000039733)	TNFSF13 (ENSCJAG00000032369)	SENP3 (ENSCJAG00000015137)	EIF4A1 (ENSCJAG00000015114)	CD68 (ENSCJAG00000048079)	MPDU1 (ENSCJAG00000015095)	SOX15 (ENSCJAG00000007951)	FXR2 (ENSCJAG00000015063)	SAT2 (ENSCJAG00000015055)	SHBG (ENSCJAG00000015035)	ATP1B2 (ENSCJAG00000015019)	TP53 (ENSCJAG00000014978)	WRAP53 (ENSCJAG00000014965)	EFNB3 (ENSCJAG00000044444)	DNAH2 (ENSCJAG00000014881)	ENSCJAG00000084720 ##22	KDM6B (ENSCJAG00000014850)	TMEM88 (ENSCJAG00000083328)	NAA38 (ENSCJAG00000014843)	CYB5D1 (ENSCJAG00000014841)	CHD3 (ENSCJAG00000014766)	RNF227 (ENSCJAG00000041018)	KCNAB3 (ENSCJAG00000014760)	TRAPPC1 (ENSCJAG00000072023)	CNTROB (ENSCJAG00000014727)	GUCY2D (ENSCJAG00000014688)	ALOX12B (ENSCJAG00000014652)	ALOXE3 (ENSCJAG00000014599)	HES7 (ENSCJAG00000014589)	PER1 (ENSCJAG00000014556)	VAMP2 (ENSCJAG00000014540)
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	796																ENSTSYG00000034680 #22
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	7337						METTL4 (ENSTSYG00000005777) #14	NDC80 (ENSTSYG00000005807) #15	SMCHD1 (ENSTSYG00000005460) #16	ENSTSYG00000026320	EMILIN2 (ENSTSYG00000003553) #17	LPIN2 (ENSTSYG00000012231) #18	MYOM1 (ENSTSYG00000005623) #19	ENSTSYG00000030971 #20	MYL12B (ENSTSYG00000005569) #21	ENSTSYG00000037506	TGIF1 (ENSTSYG00000008982) #22
Tarsier	MODERN SPECIES	5801										RNF19A (ENSTSYG00000029101)	SPAG1 (ENSTSYG00000000424)	POLR2K (ENSTSYG00000003640)	FBXO43 (ENSTSYG00000008181)	RGS22 (ENSTSYG00000008139)	ENSTSYG00000000843	ENSTSYG00000029453 #22	VPS13B (ENSTSYG00000002291)
Strepsirrhini	ANCESTRAL SPECIES	22	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a	ENSGT00390000007058
Lemuriformes	ANCESTRAL SPECIES	25	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a	ENSGT00390000007058
Lemuriformes_a	ANCESTRAL SPECIES	32	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a	ENSGT00390000007058
Coquerels sifaka	MODERN SPECIES	522	THOC1 (ENSPCOG00000009234)	COLEC12 (ENSPCOG00000026722) #7	CLUL1 (ENSPCOG00000026641) #9	TYMS (ENSPCOG00000023949) #10	ENOSF1 (ENSPCOG00000016574) #11	ENSPCOG00000002353 #12	ADCYAP1 (ENSPCOG00000011810) #13	METTL4 (ENSPCOG00000020273) #14	NDC80 (ENSPCOG00000024438) #15	SMCHD1 (ENSPCOG00000028124) #16	EMILIN2 (ENSPCOG00000023410) #17	LPIN2 (ENSPCOG00000027455) #18	MYOM1 (ENSPCOG00000019999) #19	MYL12A (ENSPCOG00000018571) #20	MYL12B (ENSPCOG00000028244) #21	TGIF1 (ENSPCOG00000013428) #22	DLGAP1 (ENSPCOG00000025011) #23	AKAIN1 (ENSPCOG00000003655) #25	ZBTB14 (ENSPCOG00000027135) #26	EPB41L3 (ENSPCOG00000007637) #27	ENSPCOG00000014927	TMEM200C (ENSPCOG00000020142) #28	ENSPCOG00000026051 #29	ENSPCOG00000021962	ARHGAP28 (ENSPCOG00000018113) #30	LAMA1 (ENSPCOG00000010084) #32
Greater bamboo lemur	MODERN SPECIES	325	FGF14 (ENSPSMG00000016444)	TPP2 (ENSPSMG00000016375)	METTL21C (ENSPSMG00000016235)	TEX30 (ENSPSMG00000016225)	POGLUT2 (ENSPSMG00000016189)	ENSPSMG00000016130	METTL21EP (ENSPSMG00000016020)	SLC10A2 (ENSPSMG00000016013)	ENSPSMG00000015983	SMCHD1 (ENSPSMG00000015952) #16	EMILIN2 (ENSPSMG00000015903) #17	LPIN2 (ENSPSMG00000015874) #18	MYOM1 (ENSPSMG00000015775) #19	MYL12A (ENSPSMG00000015629) #20	ENSPSMG00000015612 #21	TGIF1 (ENSPSMG00000015580) #22	DLGAP1 (ENSPSMG00000015083) #23	ENSPSMG00000014669	ENSPSMG00000014657	AKAIN1 (ENSPSMG00000014644) #25	ZBTB14 (ENSPSMG00000014640) #26	EPB41L3 (ENSPSMG00000014474) #27	TMEM200C (ENSPSMG00000014145) #28
Mouse lemur	MODERN SPECIES	10	ENOSF1 (ENSMICG00000014847) #11	YES1 (ENSMICG00000028620) #12	ADCYAP1 (ENSMICG00000030488) #13	ENSMICG00000033941	ENSMICG00000033758	ENSMICG00000029575	METTL4 (ENSMICG00000037155) #14	NDC80 (ENSMICG00000008378) #15	SMCHD1 (ENSMICG00000012555) #16	ENSMICG00000036843	EMILIN2 (ENSMICG00000017574) #17	LPIN2 (ENSMICG00000017575) #18	MYOM1 (ENSMICG00000017883) #19	MYL12A (ENSMICG00000037011) #20	MYL12B (ENSMICG00000027780) #21	TGIF1 (ENSMICG00000029611) #22	DLGAP1 (ENSMICG00000001909) #23	AKAIN1 (ENSMICG00000034961) #25	ZBTB14 (ENSMICG00000034962) #26	EPB41L3 (ENSMICG00000015594) #27	TMEM200C (ENSMICG00000047300) #28	L3MBTL4 (ENSMICG00000015626) #29	ARHGAP28 (ENSMICG00000009879) #30	LAMA1 (ENSMICG00000007685) #32	ENSMICG00000031748	PTPRM (ENSMICG00000001715) #34	RAB12 (ENSMICG00000030661) #35	MTCL1 (ENSMICG00000002310) #36	ENSMICG00000037928	ENSMICG00000046653	NDUFV2 (ENSMICG00000038090) #37
Bushbaby	MODERN SPECIES	328											EMILIN2 (ENSOGAG00000024910) #17	LPIN2 (ENSOGAG00000001326) #18	MYOM1 (ENSOGAG00000001335) #19	MYL12A (ENSOGAG00000001340) #20	MYL12B (ENSOGAG00000029777) #21	TGIF1 (ENSOGAG00000030342) #22	DLGAP1 (ENSOGAG00000013126) #23	ENSOGAG00000027671	ENSOGAG00000013372
Euarchontoglires_A	ANCESTRAL SPECIES	22	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00530000063770.d	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37
Tree shrew	MODERN SPECIES	8574															ENSTBEG00000008750	TGIF1 (ENSTBEG00000008845) #22
Glires	ANCESTRAL SPECIES	23	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00530000063770.d	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37
Lagomorpha	ANCESTRAL SPECIES	41	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n.p #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a
Rabbit	MODERN SPECIES	20	COLEC12 (ENSOCUG00000022216) #7	CETN1 (ENSOCUG00000009188) #8	CLUL1 (ENSOCUG00000008658) #9	ENSOCUG00000008667 #10	ENOSF1 (ENSOCUG00000008678) #11	YES1 (ENSOCUG00000005874) #12	ADCYAP1 (ENSOCUG00000009463) #13	ENSOCUG00000024410	METTL4 (ENSOCUG00000022390) #14	NDC80 (ENSOCUG00000015410) #15	SMCHD1 (ENSOCUG00000000020) #16	EMILIN2 (ENSOCUG00000002553) #17	LPIN2 (ENSOCUG00000009433) #18	MYOM1 (ENSOCUG00000008571) #19	ENSOCUG00000021304 #20	TGIF1 (ENSOCUG00000013752) #22	ENSOCUG00000037037	ENSOCUG00000029174	DLGAP1 (ENSOCUG00000013763) #23	AKAIN1 (ENSOCUG00000035231) #25	ENSOCUG00000023402	ZBTB14 (ENSOCUG00000004131) #26	EPB41L3 (ENSOCUG00000021196) #27	ENSOCUG00000032244	TMEM200C (ENSOCUG00000024350) #28	ENSOCUG00000037625	L3MBTL4 (ENSOCUG00000013013) #29	ARHGAP28 (ENSOCUG00000003323) #30	LAMA1 (ENSOCUG00000009424) #32	LRRC30 (ENSOCUG00000001704) #33	ENSOCUG00000032560
Pika	MODERN SPECIES	3668																TGIF1 (ENSOPRG00000000958) #22	DLGAP1 (ENSOPRG00000000972) #23	ENSOPRG00000000982
Rodentia	ANCESTRAL SPECIES	23	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00530000063770.d	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37
Rodentia_B	ANCESTRAL SPECIES	27	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00530000063770.d	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37
Myomorpha	ANCESTRAL SPECIES	45	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00530000063770.d	ENSGT00940000159325 #35	ENSGT00950000182982.A #36
Muroidea	ANCESTRAL SPECIES	46	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00530000063770.d	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00950000182970.B
Muroidea_A	ANCESTRAL SPECIES	19			ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00530000063770.d	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00950000182970.B
Cricetidae	ANCESTRAL SPECIES	19			ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00530000063770.d	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00950000182970.B
Cricetinae	ANCESTRAL SPECIES	3			ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00530000063770.d	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00950000182970.B	ENSGT00390000016717
Golden Hamster	MODERN SPECIES	747						ENSMAUG00000008517	ENSMAUG00000017822	Mettl4 (ENSMAUG00000004504) #14	Ndc80 (ENSMAUG00000005822) #15	ENSMAUG00000009467	Smchd1 (ENSMAUG00000020732) #16	Emilin2 (ENSMAUG00000008934) #17	Lpin2 (ENSMAUG00000009579) #18	Myom1 (ENSMAUG00000012755) #19	Myl12a (ENSMAUG00000018600) #20	ENSMAUG00000018223 #22	Dlgap1 (ENSMAUG00000019471) #23	Akain1 (ENSMAUG00000020687) #25	Zbtb14 (ENSMAUG00000014139) #26	Epb41l3 (ENSMAUG00000011827) #27	ENSMAUG00000019846	Tmem200c (ENSMAUG00000014507) #28	L3mbtl4 (ENSMAUG00000001573) #29	Arhgap28 (ENSMAUG00000016331) #30	Lama1 (ENSMAUG00000000452) #32	Lrrc30 (ENSMAUG00000002146) #33	ENSMAUG00000013283 #34	ENSMAUG00000001486 #34	Themis3 (ENSMAUG00000011734)	Rab12 (ENSMAUG00000008371) #35	Mtcl1 (ENSMAUG00000014436) #36
Chinese hamster chok1gshd	MODERN SPECIES	1	ENSCGRG00001007268 #11	Yes1 (ENSCGRG00001012390) #12	Adcyap1 (ENSCGRG00001007071) #13	ENSCGRG00001010839	ENSCGRG00001012413	ENSCGRG00001010099	Mettl4 (ENSCGRG00001005723) #14	ENSCGRG00001009792	Ndc80 (ENSCGRG00001011888) #15	Smchd1 (ENSCGRG00001011971) #16	Emilin2 (ENSCGRG00001005288) #17	Lpin2 (ENSCGRG00001012322) #18	Myom1 (ENSCGRG00001012204) #19	Myl12a (ENSCGRG00001011344) #20	Myl12b (ENSCGRG00001011388) #21	Tgif1 (ENSCGRG00001007018) #22	Dlgap1 (ENSCGRG00001010521) #23	Akain1 (ENSCGRG00001011277) #25	Zbtb14 (ENSCGRG00001011456) #26	Epb41l3 (ENSCGRG00001007547) #27	Tmem200c (ENSCGRG00001010878) #28	L3mbtl4 (ENSCGRG00001011431) #29	Arhgap28 (ENSCGRG00001005575) #30	Lama1 (ENSCGRG00001011536) #32	Lrrc30 (ENSCGRG00001010374) #33	Ptprm (ENSCGRG00001011796) #34	Themis3 (ENSCGRG00001011260)	Rab12 (ENSCGRG00001006958) #35	Mtcl1 (ENSCGRG00001004149) #36	ENSCGRG00001010133	Ddx11 (ENSCGRG00001004560)
Cricetidae_B	ANCESTRAL SPECIES	62			ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00530000063770.d	ENSGT00940000159325 #35	ENSGT00950000182982.A #36
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	4	ENSPEMG00000029175 #9	Tyms (ENSPEMG00000022684) #10	ENSPEMG00000023960 #11	ENSPEMG00000030907 #12	Adcyap1 (ENSPEMG00000026939) #13	ENSPEMG00000021079	ENSPEMG00000021564	ENSPEMG00000012275 #14	Ndc80 (ENSPEMG00000011873) #15	Smchd1 (ENSPEMG00000010741) #16	Emilin2 (ENSPEMG00000000648) #17	Lpin2 (ENSPEMG00000016819) #18	Myom1 (ENSPEMG00000010271) #19	Myl12a (ENSPEMG00000021243) #20	Myl12b (ENSPEMG00000022144) #21	ENSPEMG00000026379 #22	ENSPEMG00000031236	Dlgap1 (ENSPEMG00000020719) #23	ENSPEMG00000027160	ENSPEMG00000025947	Akain1 (ENSPEMG00000024985) #25	Zbtb14 (ENSPEMG00000016649) #26	Epb41l3 (ENSPEMG00000009758) #27	Tmem200c (ENSPEMG00000026206) #28	L3mbtl4 (ENSPEMG00000001103) #29	Arhgap28 (ENSPEMG00000020350) #30	Lama1 (ENSPEMG00000021586) #32	Lrrc30 (ENSPEMG00000003079) #33	Ptprm (ENSPEMG00000024155) #34	Themis3 (ENSPEMG00000021070)	Rab12 (ENSPEMG00000021032) #35
Northern American deer mouse	MODERN SPECIES		ENSPEMG00000029012	ENSPEMG00000005907	Or9q1 (ENSPEMG00000030928)	Or9i14 (ENSPEMG00000028210)	ENSPEMG00000027169	Or9q2 (ENSPEMG00000028521)	Or1s2 (ENSPEMG00000029030)	Or10q12 (ENSPEMG00000026052)	Or10q1 (ENSPEMG00000026262)	ENSPEMG00000008726	ENSPEMG00000029884	ENSPEMG00000030179	ENSPEMG00000026589	ENSPEMG00000028276	ENSPEMG00000024565	ENSPEMG00000026287 #22	Ms4a2 (ENSPEMG00000009344)	Ms4a3 (ENSPEMG00000011172)	Oosp2 (ENSPEMG00000013991)	ENSPEMG00000016369	ENSPEMG00000014022	Cblif (ENSPEMG00000015002)	Mrpl16 (ENSPEMG00000001887)	Stx3 (ENSPEMG00000006730)	ENSPEMG00000007379	ENSPEMG00000008694	Or10v1 (ENSPEMG00000008089)	Patl1 (ENSPEMG00000014215)	Osbp (ENSPEMG00000017130)	ENSPEMG00000025531	Or4d11 (ENSPEMG00000030514)
Prairie vole	MODERN SPECIES	103							ENSMOCG00000022549	ENSMOCG00000000095 #14	Ndc80 (ENSMOCG00000012221) #15	Smchd1 (ENSMOCG00000013945) #16	Emilin2 (ENSMOCG00000000131) #17	Lpin2 (ENSMOCG00000005299) #18	Myom1 (ENSMOCG00000008094) #19	Myl12a (ENSMOCG00000005742) #20	Myl12b (ENSMOCG00000018029) #21	ENSMOCG00000017885 #22	Dlgap1 (ENSMOCG00000003521) #23	Akain1 (ENSMOCG00000012989) #25	Zbtb14 (ENSMOCG00000010611) #26	ENSMOCG00000003079	Epb41l3 (ENSMOCG00000000728) #27	Tmem200c (ENSMOCG00000011720) #28	ENSMOCG00000020294 #29	ENSMOCG00000016924	Arhgap28 (ENSMOCG00000002311) #30	Mtcl1 (ENSMOCG00000007848) #36	Rab12 (ENSMOCG00000000452) #35	Themis3 (ENSMOCG00000009480)	Ptprm (ENSMOCG00000001682) #34	Lrrc30 (ENSMOCG00000022722) #33	Lama1 (ENSMOCG00000019094) #32
Murinae	ANCESTRAL SPECIES	9				ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00530000063770.d	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00950000182970.B	ENSGT00390000016717
Mus	ANCESTRAL SPECIES	16	ENSGT00390000009189	ENSGT00940000154800.ab	ENSGT00940000159280	ENSGT00940000157706	ENSGT00390000002768	ENSGT00940000156217	ENSGT00390000004254	ENSGT00940000154524.b	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00530000063770.d	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00950000182970.B	ENSGT00390000016717
Mus_A	ANCESTRAL SPECIES	10	ENSGT00390000009189	ENSGT00940000154800.ab	ENSGT00940000159280	ENSGT00940000157706	ENSGT00390000002768	ENSGT00940000156217	ENSGT00390000004254	ENSGT00940000154524.b	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00530000063770.d	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00950000182970.B	ENSGT00390000016717
Mus_B	ANCESTRAL SPECIES	9	ENSGT00390000009189	ENSGT00940000154800.ab	ENSGT00940000159280	ENSGT00940000157706	ENSGT00390000002768	ENSGT00940000156217	ENSGT00390000004254	ENSGT00940000154524.b	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00530000063770.d	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00950000182970.B	ENSGT00390000016717
Mouse	MODERN SPECIES	8	Ypel5 (ENSMUSG00000039770)	Alk (ENSMUSG00000055471)	Clip4 (ENSMUSG00000024059)	Pcare (ENSMUSG00000044375)	Togaram2 (ENSMUSG00000045761)	Wdr43 (ENSMUSG00000041057)	Spdya (ENSMUSG00000052525)	Ndc80 (ENSMUSG00000024056) #15	Smchd1 (ENSMUSG00000024054) #16	Emilin2 (ENSMUSG00000024053) #17	Lpin2 (ENSMUSG00000024052) #18	Myom1 (ENSMUSG00000024049) #19	Myl12a (ENSMUSG00000024048) #20	Gm49909 (ENSMUSG00000117098)	Myl12b (ENSMUSG00000034868) #21	Tgif1 (ENSMUSG00000047407) #22	Dlgap1 (ENSMUSG00000003279) #23	Akain1 (ENSMUSG00000091636) #25	Zbtb14 (ENSMUSG00000049672) #26	Epb41l3 (ENSMUSG00000024044) #27	Tmem200c (ENSMUSG00000095407) #28	L3mbtl4 (ENSMUSG00000041565) #29	Arhgap28 (ENSMUSG00000024043) #30	Lama1 (ENSMUSG00000032796) #32	Lrrc30 (ENSMUSG00000073375) #33	Ptprm (ENSMUSG00000033278) #34	Themis3 (ENSMUSG00000024105)	Rab12 (ENSMUSG00000023460) #35	Mtcl1 (ENSMUSG00000052105) #36	Ddx11 (ENSMUSG00000035842)	Washc1 (ENSMUSG00000024101)
Mus_C	ANCESTRAL SPECIES	9	ENSGT00390000009189	ENSGT00940000154800.ab	ENSGT00940000159280	ENSGT00940000157706	ENSGT00390000002768	ENSGT00940000156217	ENSGT00390000004254	ENSGT00940000154524.b	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00530000063770.d	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00950000182970.B	ENSGT00390000016717
spretus	MODERN SPECIES	8	Alk (MGP_SPRETEiJ_G0022776)	Clip4 (MGP_SPRETEiJ_G0022775)	Pcare (MGP_SPRETEiJ_G0022774)	Togaram2 (MGP_SPRETEiJ_G0022773)	Wdr43 (MGP_SPRETEiJ_G0022772)	Spdya (MGP_SPRETEiJ_G0022771)	Ndc80 (MGP_SPRETEiJ_G0022770) #15	MGP_SPRETEiJ_G0022769	Smchd1 (MGP_SPRETEiJ_G0022768) #16	Emilin2 (MGP_SPRETEiJ_G0022767) #17	Lpin2 (MGP_SPRETEiJ_G0022766) #18	Myom1 (MGP_SPRETEiJ_G0022765) #19	Myl12a (MGP_SPRETEiJ_G0022764) #20	Myl12b (MGP_SPRETEiJ_G0022763) #21	MGP_SPRETEiJ_G0022762	Tgif1 (MGP_SPRETEiJ_G0022761) #22	Dlgap1 (MGP_SPRETEiJ_G0022760) #23	Akain1 (MGP_SPRETEiJ_G0022759) #25	MGP_SPRETEiJ_G0022758 #27	Tmem200c (MGP_SPRETEiJ_G0022757) #28	L3mbtl4 (MGP_SPRETEiJ_G0022756) #29	Arhgap28 (MGP_SPRETEiJ_G0022755) #30	Lama1 (MGP_SPRETEiJ_G0022754) #32	Lrrc30 (MGP_SPRETEiJ_G0022753) #33	MGP_SPRETEiJ_G0022752 #34	Themis3 (MGP_SPRETEiJ_G0022751)	Rab12 (MGP_SPRETEiJ_G0022750) #35	Mtcl1 (MGP_SPRETEiJ_G0022749) #36	Ddx11 (MGP_SPRETEiJ_G0022748)	Washc1 (MGP_SPRETEiJ_G0022747)	Ndufv2 (MGP_SPRETEiJ_G0022746) #37
Steppe mouse	MODERN SPECIES	3371							Ndc80 (ENSMSIG00000004967) #15	ENSMSIG00000004957	Smchd1 (ENSMSIG00000004840) #16	Emilin2 (ENSMSIG00000004801) #17	Lpin2 (ENSMSIG00000004627) #18	Myom1 (ENSMSIG00000004331) #19	ENSMSIG00000004252 ##21	Myl12b (ENSMSIG00000004224) #21	ENSMSIG00000004215	Tgif1 (ENSMSIG00000004165) #22	ENSMSIG00000004136	ENSMSIG00000004094	Dlgap1 (ENSMSIG00000003025) #23	Akain1 (ENSMSIG00000002956) #25	ENSMSIG00000002940	Zbtb14 (ENSMSIG00000002900) #26	ENSMSIG00000002374 #27	Tmem200c (ENSMSIG00000002319) #28	L3mbtl4 (ENSMSIG00000002227) #29	Arhgap28 (ENSMSIG00000002010) #30	Lama1 (ENSMSIG00000001864) #32	Lrrc30 (ENSMSIG00000001839) #33	Ptprm (ENSMSIG00000000887) #34	Themis3 (ENSMSIG00000000792)	Rab12 (ENSMSIG00000000750) #35
Ryukyu mouse	MODERN SPECIES	8	Lbh (MGP_CAROLIEiJ_G0021866)	Alk (MGP_CAROLIEiJ_G0021865)	Clip4 (MGP_CAROLIEiJ_G0021864)	Pcare (MGP_CAROLIEiJ_G0021863)	Togaram2 (MGP_CAROLIEiJ_G0021862)	Wdr43 (MGP_CAROLIEiJ_G0021861)	Spdya (MGP_CAROLIEiJ_G0021860)	Ndc80 (MGP_CAROLIEiJ_G0021859) #15	MGP_CAROLIEiJ_G0021858	MGP_CAROLIEiJ_G0021857 ##16	Emilin2 (MGP_CAROLIEiJ_G0021856) #17	Lpin2 (MGP_CAROLIEiJ_G0021855) #18	Myom1 (MGP_CAROLIEiJ_G0021854) #19	Myl12a (MGP_CAROLIEiJ_G0021853) #20	Myl12b (MGP_CAROLIEiJ_G0021852) #21	Tgif1 (MGP_CAROLIEiJ_G0021851) #22	Dlgap1 (MGP_CAROLIEiJ_G0021850) #23	Akain1 (MGP_CAROLIEiJ_G0021849) #25	Zbtb14 (MGP_CAROLIEiJ_G0021848) #26	MGP_CAROLIEiJ_G0021847 #27	Tmem200c (MGP_CAROLIEiJ_G0021846) #28	L3mbtl4 (MGP_CAROLIEiJ_G0021845) #29	Arhgap28 (MGP_CAROLIEiJ_G0021844) #30	Lama1 (MGP_CAROLIEiJ_G0021843) #32	Lrrc30 (MGP_CAROLIEiJ_G0021842) #33	Ptprm (MGP_CAROLIEiJ_G0021841) #34	Themis3 (MGP_CAROLIEiJ_G0021840)	Rab12 (MGP_CAROLIEiJ_G0021839) #35	Mtcl1 (MGP_CAROLIEiJ_G0021838) #36	Ddx11 (MGP_CAROLIEiJ_G0021837)	Washc1 (MGP_CAROLIEiJ_G0021836)
Shrew mouse	MODERN SPECIES	9	Lbh (MGP_PahariEiJ_G0020853)	Alk (MGP_PahariEiJ_G0020852)	Clip4 (MGP_PahariEiJ_G0020851)	Pcare (MGP_PahariEiJ_G0020850)	Togaram2 (MGP_PahariEiJ_G0020849)	Wdr43 (MGP_PahariEiJ_G0020848)	Spdya (MGP_PahariEiJ_G0020847)	Ndc80 (MGP_PahariEiJ_G0020846) #15	MGP_PahariEiJ_G0020845	Smchd1 (MGP_PahariEiJ_G0020844) #16	Emilin2 (MGP_PahariEiJ_G0020843) #17	Lpin2 (MGP_PahariEiJ_G0020842) #18	Myom1 (MGP_PahariEiJ_G0020841) #19	Myl12a (MGP_PahariEiJ_G0020840) #20	Myl12b (MGP_PahariEiJ_G0020839) #21	Tgif1 (MGP_PahariEiJ_G0020838) #22	Dlgap1 (MGP_PahariEiJ_G0020837) #23	Akain1 (MGP_PahariEiJ_G0020836) #25	Zbtb14 (MGP_PahariEiJ_G0020835) #26	MGP_PahariEiJ_G0020834 #27	Tmem200c (MGP_PahariEiJ_G0020833) #28	L3mbtl4 (MGP_PahariEiJ_G0020832) #29	Arhgap28 (MGP_PahariEiJ_G0020831) #30	Lama1 (MGP_PahariEiJ_G0020830) #32	Lrrc30 (MGP_PahariEiJ_G0020829) #33	Ptprm (MGP_PahariEiJ_G0020828) #34	Themis3 (MGP_PahariEiJ_G0020827)	Rab12 (MGP_PahariEiJ_G0020826) #35	Mtcl1 (MGP_PahariEiJ_G0020825) #36	Ddx11 (MGP_PahariEiJ_G0020824)	Washc1 (MGP_PahariEiJ_G0020823)
Rat	MODERN SPECIES	19	Tyms (ENSRNOG00000037225) #10	Yes1 (ENSRNOG00000037227) #12	Adcyap1 (ENSRNOG00000049882) #13	Ppidl1 (ENSRNOG00000037230)	ENSRNOG00000068876	Fam114a1l1 (ENSRNOG00000002110)	Mettl4 (ENSRNOG00000026280) #14	ENSRNOG00000069721	Ndc80 (ENSRNOG00000013727) #15	ENSRNOG00000066469	Smchd1 (ENSRNOG00000014319) #16	Emilin2 (ENSRNOG00000014837) #17	Lpin2 (ENSRNOG00000014876) #18	Myom1 (ENSRNOG00000057701) #19	Myl12b (ENSRNOG00000015278) #20	Tgif1 (ENSRNOG00000015906) #22	Dlgap1 (ENSRNOG00000016196) #23	ENSRNOG00000069381	Akain1 (ENSRNOG00000063808) #25	Zfp161 (ENSRNOG00000016719) #26	Epb41l3 (ENSRNOG00000016724) #27	Tmem200c (ENSRNOG00000049880) #28	L3mbtl4 (ENSRNOG00000025273) #29	Rps26-ps4 (ENSRNOG00000056280)	Arhgap28 (ENSRNOG00000017065) #30	Lama1 (ENSRNOG00000017237) #32	Lrrc30 (ENSRNOG00000030389) #33	Ptprm (ENSRNOG00000011700) #34	Themis3 (ENSRNOG00000012115)	AABR07039169.1 (ENSRNOG00000051198)	Rab12 (ENSRNOG00000019295) #35
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	894							ENSNGAG00000001249	Mettl4 (ENSNGAG00000000989) #14	Ndc80 (ENSNGAG00000015753) #15	Smchd1 (ENSNGAG00000020402) #16	ENSNGAG00000012685 #17	Lpin2 (ENSNGAG00000023719) #18	Myom1 (ENSNGAG00000024163) #19	Myl12a (ENSNGAG00000016011) #20	Myl12b (ENSNGAG00000015436) #21	ENSNGAG00000017055 #22	Dlgap1 (ENSNGAG00000003251) #23	Akain1 (ENSNGAG00000014300) #25	Zbtb14 (ENSNGAG00000017654) #26	ENSNGAG00000019412 #27	ENSNGAG00000020627 #27	Tmem200c (ENSNGAG00000010989) #28	L3mbtl4 (ENSNGAG00000014474) #29	ENSNGAG00000006931	Arhgap28 (ENSNGAG00000018728) #30	Lama1 (ENSNGAG00000010298) #32	Lrrc30 (ENSNGAG00000009990) #33	Ptprm (ENSNGAG00000007608) #34	Themis3 (ENSNGAG00000021267)	ENSNGAG00000024103 #35	Mtcl1 (ENSNGAG00000022416) #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	1601	Sparcl1 (ENSNGAG00000013980)	Gm17660 (ENSNGAG00000017913)	Nudt9 (ENSNGAG00000019950)	Hsd17b11 (ENSNGAG00000006813)	Hsd17b13 (ENSNGAG00000011798)	ENSNGAG00000018962	ENSNGAG00000014096	1700016H13Rik (ENSNGAG00000019259)	Slc10a6 (ENSNGAG00000000716)	Ptpn13 (ENSNGAG00000011185)	Mapk10 (ENSNGAG00000009045)	Arhgap24 (ENSNGAG00000000035)	ENSNGAG00000017344	Wdfy3 (ENSNGAG00000010212)	Cds1 (ENSNGAG00000006898)	ENSNGAG00000012142 #22	ENSNGAG00000012409	Nkx6-1 (ENSNGAG00000003700)	ENSNGAG00000000196	ENSNGAG00000002747	Abraxas1 (ENSNGAG00000013249)	Mrps18c (ENSNGAG00000015980)	Helq (ENSNGAG00000013230)
Lesser Egyptian jerboa	MODERN SPECIES	93	Kcng2 (ENSJJAG00000019923)	Ctdp1 (ENSJJAG00000010330)	Nfatc1 (ENSJJAG00000004285)	Atp9b (ENSJJAG00000012553)	Sall3 (ENSJJAG00000014351)	Galr1 (ENSJJAG00000014911)	ENSJJAG00000016019	Zfp236 (ENSJJAG00000017493)	Smchd1 (ENSJJAG00000003619) #16	Emilin2 (ENSJJAG00000012081) #17	Lpin2 (ENSJJAG00000013799) #18	Myom1 (ENSJJAG00000016402) #19	ENSJJAG00000018032 #20	ENSJJAG00000019155 #21	ENSJJAG00000019202	Tgif1 (ENSJJAG00000009770) #22	Dlgap1 (ENSJJAG00000012760) #23	Akain1 (ENSJJAG00000014944) #25	Zbtb14 (ENSJJAG00000015998) #26	Epb41l3 (ENSJJAG00000017223) #27	Tmem200c (ENSJJAG00000007189) #28	L3mbtl4 (ENSJJAG00000011127) #29	Arhgap28 (ENSJJAG00000017884) #30	Lama1 (ENSJJAG00000024150) #32	Lrrc30 (ENSJJAG00000014844) #33	Ptprm (ENSJJAG00000022917) #34	Rab12 (ENSJJAG00000019064) #35	Mtcl1 (ENSJJAG00000022910) #36
Kangaroo rat	MODERN SPECIES	419								Mettl4 (ENSDORG00000005216) #14	Ndc80 (ENSDORG00000000268) #15	Smchd1 (ENSDORG00000004508) #16	Emilin2 (ENSDORG00000028553) #17	Lpin2 (ENSDORG00000006891) #18	Myom1 (ENSDORG00000009806) #19	ENSDORG00000029581 #20	Myl12b (ENSDORG00000030160) #21	Tgif1 (ENSDORG00000026503) #22	Dlgap1 (ENSDORG00000012414) #23	Akain1 (ENSDORG00000024259) #25	Zbtb14 (ENSDORG00000026644) #26	Epb41l3 (ENSDORG00000014615) #27	L3mbtl4 (ENSDORG00000013048) #29	Arhgap28 (ENSDORG00000001783) #30	Lama1 (ENSDORG00000010869) #32	ENSDORG00000027440	Ptprm (ENSDORG00000015704) #34	ENSDORG00000016414	Rab12 (ENSDORG00000008920) #35	Mtcl1 (ENSDORG00000009301) #36	ENSDORG00000028288	Mc5r (ENSDORG00000006765)	Rnmt (ENSDORG00000016722)
Rodentia_A	ANCESTRAL SPECIES	23	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00530000063770.d	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a
Hystricomorpha	ANCESTRAL SPECIES	32	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920.o.a.b #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00530000063770.d	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a	ENSGT00390000007058
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	9	ADCYAP1 (ENSHGLG00000034296) #13	ENSHGLG00000046692	ENSHGLG00000041049	ENSHGLG00000035395	ENSHGLG00000038851	ENSHGLG00000004061	ENSHGLG00000004250 #14	ENSHGLG00000033709	ENSHGLG00000006458 #15	SMCHD1 (ENSHGLG00000003560) #16	ENSHGLG00000044239 #17	LPIN2 (ENSHGLG00000007840) #18	MYOM1 (ENSHGLG00000014511) #19	MYL12A (ENSHGLG00000040455) #20	MYL12B (ENSHGLG00000034781) #21	TGIF1 (ENSHGLG00000018765) #22	ENSHGLG00000036933 #23	ENSHGLG00000006158	ENSHGLG00000042452	ENSHGLG00000006262	ENSHGLG00000042885	ENSHGLG00000007011 #25	ENSHGLG00000046379 #26	EPB41L3 (ENSHGLG00000010311) #27	ENSHGLG00000034855 #28	ENSHGLG00000020714	ARHGAP28 (ENSHGLG00000006823) #30	LAMA1 (ENSHGLG00000009921) #32	ENSHGLG00000042487	LRRC30 (ENSHGLG00000020514) #33	PTPRM (ENSHGLG00000008461) #34
Naked mole-rat female	MODERN SPECIES	7	IL6ST (ENSHGLG00000002605)	ENSHGLG00000017887	ANKRD55 (ENSHGLG00000002248)	ENSHGLG00000019923	ENSHGLG00000037743	ENSHGLG00000002155	MAP3K1 (ENSHGLG00000008852)	ENSHGLG00000016353	SETD9 (ENSHGLG00000007843)	MIER3 (ENSHGLG00000007522)	ENSHGLG00000049674	ENSHGLG00000047590	GPBP1 (ENSHGLG00000006461)	ENSHGLG00000048618	ACTBL2 (ENSHGLG00000020239)	ENSHGLG00000005073 #22	PLK2 (ENSHGLG00000004619)	GAPT (ENSHGLG00000035104)	RAB3C (ENSHGLG00000004380)	ENSHGLG00000046236	ENSHGLG00000049862	ENSHGLG00000043409	ENSHGLG00000034016	PDE4D (ENSHGLG00000007099)	DEPDC1B (ENSHGLG00000019523)	ELOVL7 (ENSHGLG00000041515)	ENSHGLG00000019517	NDUFAF2 (ENSHGLG00000049827)	ENSHGLG00000019502	ZSWIM6 (ENSHGLG00000003187)	ENSHGLG00000002012
Hystricomorpha_a	ANCESTRAL SPECIES	26	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920.o.a.b #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00530000063770.d	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a	ENSGT00390000007058
Hystricomorpha_b	ANCESTRAL SPECIES	21	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920.o.a.b #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00530000063770.d	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a	ENSGT00390000007058	ENSGT00940000154639
Long-tailed chinchilla	MODERN SPECIES	109	CLUL1 (ENSCLAG00000011935) #9	TYMS (ENSCLAG00000011426) #10	ENOSF1 (ENSCLAG00000008600) #11	YES1 (ENSCLAG00000007748) #12	ADCYAP1 (ENSCLAG00000007209) #13	ENSCLAG00000007052	ENSCLAG00000011958	METTL4 (ENSCLAG00000011739) #14	NDC80 (ENSCLAG00000011120) #15	SMCHD1 (ENSCLAG00000008351) #16	EMILIN2 (ENSCLAG00000007221) #17	LPIN2 (ENSCLAG00000016431) #18	MYOM1 (ENSCLAG00000009876) #19	MYL12A (ENSCLAG00000011666) #20	MYL12B (ENSCLAG00000008854) #21	TGIF1 (ENSCLAG00000008448) #22	DLGAP1 (ENSCLAG00000007165) #23	AKAIN1 (ENSCLAG00000012253) #25	ZBTB14 (ENSCLAG00000015733) #26	EPB41L3 (ENSCLAG00000009191) #27	ARHGAP28 (ENSCLAG00000009327) #30	LAMA1 (ENSCLAG00000016313) #32	LRRC30 (ENSCLAG00000017849) #33	PTPRM (ENSCLAG00000012021) #34	ENSCLAG00000011714	RAB12 (ENSCLAG00000008683) #35	MTCL1 (ENSCLAG00000010836) #36	NDUFV2 (ENSCLAG00000008537) #37	ANKRD12 (ENSCLAG00000007955)	TWSG1 (ENSCLAG00000010627)	RALBP1 (ENSCLAG00000008823)
Degu	MODERN SPECIES	116	ENOSF1 (ENSODEG00000005113) #11	YES1 (ENSODEG00000005726) #12	ADCYAP1 (ENSODEG00000007089) #13	ENSODEG00000007303	ENSODEG00000019310	METTL4 (ENSODEG00000006068) #14	NDC80 (ENSODEG00000006479) #15	ENSODEG00000006655	SMCHD1 (ENSODEG00000006113) #16	EMILIN2 (ENSODEG00000007278) #17	LPIN2 (ENSODEG00000005432) #18	ENSODEG00000006584	MYOM1 (ENSODEG00000006774) #19	MYL12A (ENSODEG00000006110) #20	ENSODEG00000005356 #21	TGIF1 (ENSODEG00000005910) #22	DLGAP1 (ENSODEG00000006056) #23	ENSODEG00000008032	AKAIN1 (ENSODEG00000007027) #25	ZBTB14 (ENSODEG00000007228) #26	EPB41L3 (ENSODEG00000007473) #27	ARHGAP28 (ENSODEG00000005750) #30	ENSODEG00000005712	LAMA1 (ENSODEG00000006017) #32	ENSODEG00000019415	ENSODEG00000007064 #34	RAB12 (ENSODEG00000006414) #35	MTCL1 (ENSODEG00000006449) #36
Guinea pig	MODERN SPECIES	82									METTL4 (ENSCPOG00000005833) #14	NDC80 (ENSCPOG00000005838) #15	SMCHD1 (ENSCPOG00000001596) #16	EMILIN2 (ENSCPOG00000037480) #17	LPIN2 (ENSCPOG00000023844) #18	MYOM1 (ENSCPOG00000012792) #19	MYL12A (ENSCPOG00000037183) #20	ENSCPOG00000040606 #22	DLGAP1 (ENSCPOG00000006550) #23	ENSCPOG00000039039 #25	ZBTB14 (ENSCPOG00000025607) #26	EPB41L3 (ENSCPOG00000004412) #27	TMEM200C (ENSCPOG00000038683) #28	ARHGAP28 (ENSCPOG00000013280) #30	LAMA1 (ENSCPOG00000013286) #32	ENSCPOG00000006937	PTPRM (ENSCPOG00000038437) #34	ENSCPOG00000025094	RAB12 (ENSCPOG00000022689) #35	MTCL1 (ENSCPOG00000013933) #36	NDUFV2 (ENSCPOG00000037853) #37	ANKRD12 (ENSCPOG00000032722)	TWSG1 (ENSCPOG00000025437)
Sciuridae	ANCESTRAL SPECIES	31	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786.gb #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325.n #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a
Eurasian red squirrel	MODERN SPECIES	4	CLUL1 (ENSSVLG00005022648) #9	ENSSVLG00005022566 #10	ENOSF1 (ENSSVLG00005022213) #11	ENSSVLG00005022001 #12	ADCYAP1 (ENSSVLG00005021960) #13	ENSSVLG00005021938	ENSSVLG00005021834 #14	NDC80 (ENSSVLG00005021715) #15	ENSSVLG00005021684	SMCHD1 (ENSSVLG00005021629) #16	EMILIN2 (ENSSVLG00005021595) #17	LPIN2 (ENSSVLG00005021537) #18	MYOM1 (ENSSVLG00005020656) #19	MYL12A (ENSSVLG00005020518) #20	MYL12B (ENSSVLG00005020487) #21	TGIF1 (ENSSVLG00005020396) #22	DLGAP1 (ENSSVLG00005019856) #23	ENSSVLG00005019491	AKAIN1 (ENSSVLG00005019389) #25	ENSSVLG00005019313	ZBTB14 (ENSSVLG00005019264) #26	EPB41L3 (ENSSVLG00005018950) #27	TMEM200C (ENSSVLG00005018871) #28	L3MBTL4 (ENSSVLG00005018713) #29	ARHGAP28 (ENSSVLG00005018157) #30	ENSSVLG00005018044 #32	LRRC30 (ENSSVLG00005018021) #33	ENSSVLG00005017979	PTPRM (ENSSVLG00005017846) #34	ENSSVLG00005017768	ENSSVLG00005017727
Marmotini	ANCESTRAL SPECIES	31	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786.gb #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000162721	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325.n #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a
Marmotini_b	ANCESTRAL SPECIES	195							ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29
Arctic ground squirrel	MODERN SPECIES	139								METTL4 (ENSUPAG00010005108) #14	NDC80 (ENSUPAG00010005138) #15	SMCHD1 (ENSUPAG00010005174) #16	EMILIN2 (ENSUPAG00010005299) #17	LPIN2 (ENSUPAG00010005308) #18	MYOM1 (ENSUPAG00010005334) #19	ENSUPAG00010005444 #20	MYL12B (ENSUPAG00010005460) #21	TGIF1 (ENSUPAG00010005473) #22	DLGAP1 (ENSUPAG00010005500) #23	AKAIN1 (ENSUPAG00010006283) #25	ENSUPAG00010006290	ZBTB14 (ENSUPAG00010006293) #26	EPB41L3 (ENSUPAG00010006308) #27	TMEM200C (ENSUPAG00010006662) #28	L3MBTL4 (ENSUPAG00010006670) #29
Squirrel	MODERN SPECIES	272						ADCYAP1 (ENSSTOG00000011453) #13	ENSSTOG00000024466	METTL4 (ENSSTOG00000004283) #14	NDC80 (ENSSTOG00000013062) #15	SMCHD1 (ENSSTOG00000022898) #16	EMILIN2 (ENSSTOG00000026733) #17	LPIN2 (ENSSTOG00000005772) #18	MYOM1 (ENSSTOG00000005796) #19	MYL12A (ENSSTOG00000027658) #20	MYL12B (ENSSTOG00000019788) #21	TGIF1 (ENSSTOG00000027485) #22	DLGAP1 (ENSSTOG00000001728) #23
Alpin marmot	DUPLICATION
Alpin marmot	MODERN SPECIES	20	ENSMMMG00000002799	KCNQ5 (ENSMMMG00000002823)	ENSMMMG00000002902	DPPA5 (ENSMMMG00000002922)	ENSMMMG00000002931	ENSMMMG00000002946	ENSMMMG00000002966	ENSMMMG00000002973	ENSMMMG00000002997	CGAS (ENSMMMG00000003022)	MTO1 (ENSMMMG00000003047)	ENSMMMG00000003132	ENSMMMG00000003421	SLC17A5 (ENSMMMG00000003439)	CD109 (ENSMMMG00000003475)	ENSMMMG00000003553 #22
Alpin marmot	MODERN SPECIES	10	ENSMMMG00000010580	CETN1 (ENSMMMG00000010586) #8	CLUL1 (ENSMMMG00000010598) #9	TYMS (ENSMMMG00000010633) #10	ENOSF1 (ENSMMMG00000010652) #11	YES1 (ENSMMMG00000010661) #12	ADCYAP1 (ENSMMMG00000010782) #13	METTL4 (ENSMMMG00000010797) #14	NDC80 (ENSMMMG00000010813) #15	SMCHD1 (ENSMMMG00000010857) #16	EMILIN2 (ENSMMMG00000011901) #17	LPIN2 (ENSMMMG00000011908) #18	MYOM1 (ENSMMMG00000011990) #19	MYL12A (ENSMMMG00000012076) #20	MYL12B (ENSMMMG00000012089) #21	TGIF1 (ENSMMMG00000012104) #22	DLGAP1 (ENSMMMG00000012118) #23	AKAIN1 (ENSMMMG00000012852) #25	ENSMMMG00000012857	ZBTB14 (ENSMMMG00000012859) #26	EPB41L3 (ENSMMMG00000012882) #27	L3MBTL4 (ENSMMMG00000013328) #29	ARHGAP28 (ENSMMMG00000013408) #30	LAMA1 (ENSMMMG00000013463) #32	LRRC30 (ENSMMMG00000013552) #33	PTPRM (ENSMMMG00000013579) #34	ENSMMMG00000013697	ENSMMMG00000013713 #35	ENSMMMG00000013760	ENSMMMG00000013764	MTCL1 (ENSMMMG00000013768) #36
Laurasiatheria	ANCESTRAL SPECIES	23	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a
Eulipotyphla	ANCESTRAL SPECIES	1865																ENSGT00940000155230 #22	ENSGT00940000156220 #23
Hedgehog	MODERN SPECIES	9477																TGIF1 (ENSEEUG00000004881) #22
Common shrew	MODERN SPECIES	5585																TGIF1 (ENSSARG00000002819) #22	DLGAP1 (ENSSARG00000002827) #23
Laurasiatheria_a	ANCESTRAL SPECIES	13	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a
Artiodactyla	ANCESTRAL SPECIES	17	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a
Suina	ANCESTRAL SPECIES	40	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000162721	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a	ENSGT00390000007058
Pig	MODERN SPECIES	14	TYMS (ENSSSCG00000040678) #10	ENOSF1 (ENSSSCG00000027169) #11	YES1 (ENSSSCG00000031942) #12	ENSSSCG00000040699	ADCYAP1 (ENSSSCG00000035186) #13	ENSSSCG00000059038	METTL4 (ENSSSCG00000034816) #14	ENSSSCG00000020888	NDC80 (ENSSSCG00000003697) #15	SMCHD1 (ENSSSCG00000029030) #16	EMILIN2 (ENSSSCG00000003694) #17	LPIN2 (ENSSSCG00000038494) #18	MYOM1 (ENSSSCG00000003693) #19	ENSSSCG00000003691 #20	MYL12B (ENSSSCG00000058470) #21	TGIF1 (ENSSSCG00000024174) #22	DLGAP1 (ENSSSCG00000003690) #23	AKAIN1 (ENSSSCG00000056207) #25	ZBTB14 (ENSSSCG00000033032) #26	ENSSSCG00000036800	EPB41L3 (ENSSSCG00000003687) #27	ENSSSCG00000054462	TMEM200C (ENSSSCG00000039627) #28	ARHGAP28 (ENSSSCG00000021612) #30	LAMA1 (ENSSSCG00000034767) #32	ENSSSCG00000023672	PTPRM (ENSSSCG00000028805) #34	RAB12 (ENSSSCG00000038026) #35	MTCL1 (ENSSSCG00000003684) #36	NDUFV2 (ENSSSCG00000038826) #37	ANKRD12 (ENSSSCG00000003682)
Chacoan peccary	MODERN SPECIES	862	THOC1 (ENSCWAG00000006881)	COLEC12 (ENSCWAG00000006994) #7	CETN1 (ENSCWAG00000007027) #8	CLUL1 (ENSCWAG00000007055) #9	TYMS (ENSCWAG00000007139) #10	ENOSF1 (ENSCWAG00000007242) #11	YES1 (ENSCWAG00000007475) #12	ADCYAP1 (ENSCWAG00000007502) #13	METTL4 (ENSCWAG00000007542) #14	NDC80 (ENSCWAG00000007581) #15	SMCHD1 (ENSCWAG00000007610) #16	EMILIN2 (ENSCWAG00000007714) #17	LPIN2 (ENSCWAG00000007732) #18	MYOM1 (ENSCWAG00000007790) #19	MYL12A (ENSCWAG00000008049) #20	TGIF1 (ENSCWAG00000008192) #22	DLGAP1 (ENSCWAG00000008322) #23	AKAIN1 (ENSCWAG00000010892) #25	ENSCWAG00000010946	ZBTB14 (ENSCWAG00000011021) #26	EPB41L3 (ENSCWAG00000011105) #27	TMEM200C (ENSCWAG00000012298) #28	ARHGAP28 (ENSCWAG00000012324) #30	LAMA1 (ENSCWAG00000012485) #32	LRRC30 (ENSCWAG00000012566) #33	PTPRM (ENSCWAG00000012594) #34	RAB12 (ENSCWAG00000012826) #35	MTCL1 (ENSCWAG00000012924) #36	NDUFV2 (ENSCWAG00000012959) #37	ANKRD12 (ENSCWAG00000013063)	TWSG1 (ENSCWAG00000013144)
Artiodactyla_a	ANCESTRAL SPECIES	17	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a
Artiodactyla_b	ANCESTRAL SPECIES	10	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a
Cetacea	ANCESTRAL SPECIES	11	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT01010000224919	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00390000016972.a.a.b.b.a	ENSGT00950000182982.A #36	ENSGT00390000017580.bb #37	ENSGT00940000154742.a
Odontoceti	ANCESTRAL SPECIES	10	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000001347.v.o.b.b	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT01010000224919	ENSGT00550000074618.a.b.`b	ENSGT00560000078638 #25	ENSGT00940000162721	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00390000016972.a.a.b.b.a
Odontoceti_a	ANCESTRAL SPECIES	9	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000001347.v.o.b.b	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT01010000224919	ENSGT00560000078638 #25	ENSGT00940000162721	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000164030	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580.bb #37
Dolphin	MODERN SPECIES	3139							METTL4 (ENSTTRG00000008249) #14	NDC80 (ENSTTRG00000008256) #15	ENSTTRG00000008267 #16	ENSTTRG00000008276 #16	EMILIN2 (ENSTTRG00000008298) #17	LPIN2 (ENSTTRG00000008304) #18	MYOM1 (ENSTTRG00000008310) #19	MYL12A (ENSTTRG00000008319) #20	MYL12B (ENSTTRG00000008322) #21	TGIF1 (ENSTTRG00000008324) #22
Odontoceti_b	ANCESTRAL SPECIES	10	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000001347.v.o.b.b	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT01010000224919	ENSGT00560000078638 #25	ENSGT00940000162721	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT01090000260119.g	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36
Monodontidae	ANCESTRAL SPECIES	8	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000001347.v.o.b.b	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT01010000224919	ENSGT00940000162721	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT01090000260119.g	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00950000182891.a.a.b.a.b.a.i
Narwhal	MODERN SPECIES	295	CETN1 (ENSMMNG00015003008) #8	ENSMMNG00015003019	CLUL1 (ENSMMNG00015003042) #9	TYMS (ENSMMNG00015003074) #10	ENOSF1 (ENSMMNG00015003115) #11	YES1 (ENSMMNG00015003176) #12	ADCYAP1 (ENSMMNG00015003197) #13	ENSMMNG00015003209	METTL4 (ENSMMNG00015003242) #14	NDC80 (ENSMMNG00015003275) #15	SMCHD1 (ENSMMNG00015003318) #16	EMILIN2 (ENSMMNG00015003399) #17	LPIN2 (ENSMMNG00015003446) #18	MYOM1 (ENSMMNG00015003548) #19	MYL12A (ENSMMNG00015003634) #20	TGIF1 (ENSMMNG00015003660) #22	DLGAP1 (ENSMMNG00015003747) #23	ENSMMNG00015003903	ENSMMNG00015003912	ENSMMNG00015003932	ENSMMNG00015003955	ENSMMNG00015003965	ZBTB14 (ENSMMNG00015003972) #26	EPB41L3 (ENSMMNG00015004048) #27	TMEM200C (ENSMMNG00015004206) #28	L3MBTL4 (ENSMMNG00015004217) #29	ARHGAP28 (ENSMMNG00015004258) #30	LAMA1 (ENSMMNG00015004339) #32	ENSMMNG00015004377	LRRC30 (ENSMMNG00015004392) #33	PTPRM (ENSMMNG00015004419) #34
Beluga whale	MODERN SPECIES	60									METTL4 (ENSDLEG00000015259) #14	NDC80 (ENSDLEG00000015314) #15	SMCHD1 (ENSDLEG00000015395) #16	EMILIN2 (ENSDLEG00000015862) #17	LPIN2 (ENSDLEG00000015907) #18	MYOM1 (ENSDLEG00000016123) #19	MYL12B (ENSDLEG00000016178) #20	TGIF1 (ENSDLEG00000016192) #22	DLGAP1 (ENSDLEG00000016208) #23	ENSDLEG00000016252	ENSDLEG00000016260	ENSDLEG00000016274	ENSDLEG00000016292	ZBTB14 (ENSDLEG00000016304) #26	EPB41L3 (ENSDLEG00000016342) #27	L3MBTL4 (ENSDLEG00000016582) #29	ARHGAP28 (ENSDLEG00000016628) #30	LAMA1 (ENSDLEG00000016968) #32	ENSDLEG00000018830	LRRC30 (ENSDLEG00000018835)	PTPRM (ENSDLEG00000018839) #34	RAB12 (ENSDLEG00000018863) #35	MTCL1 (ENSDLEG00000018871) #36
Vaquita	MODERN SPECIES	5	CLUL1 (ENSPSNG00000012188) #9	TYMS (ENSPSNG00000012361) #10	ENOSF1 (ENSPSNG00000012510) #11	YES1 (ENSPSNG00000009957) #12	ADCYAP1 (ENSPSNG00000010057) #13	ENSPSNG00000010128	METTL4 (ENSPSNG00000010163) #14	NDC80 (ENSPSNG00000010241) #15	SMCHD1 (ENSPSNG00000010317) #16	EMILIN2 (ENSPSNG00000010385) #17	LPIN2 (ENSPSNG00000010441) #18	MYOM1 (ENSPSNG00000010586) #19	ENSPSNG00000010695	MYL12A (ENSPSNG00000010765) #20	ENSPSNG00000010881	TGIF1 (ENSPSNG00000010898) #22	DLGAP1 (ENSPSNG00000011076) #23	ENSPSNG00000012311	ENSPSNG00000012349	ENSPSNG00000012382	ENSPSNG00000012425	AKAIN1 (ENSPSNG00000012463) #25	ENSPSNG00000012501	ZBTB14 (ENSPSNG00000012511) #26	EPB41L3 (ENSPSNG00000012785) #27	TMEM200C (ENSPSNG00000014585) #28	L3MBTL4 (ENSPSNG00000014623) #29	ARHGAP28 (ENSPSNG00000015095) #30	LAMA1 (ENSPSNG00000016083) #32	ENSPSNG00000016720	LRRC30 (ENSPSNG00000016795) #33
Sperm whale	MODERN SPECIES	10	CETN1 (ENSPCTG00005018754) #8	CLUL1 (ENSPCTG00005018544) #9	TYMS (ENSPCTG00005018401) #10	ENOSF1 (ENSPCTG00005017789) #11	YES1 (ENSPCTG00005017702) #12	ADCYAP1 (ENSPCTG00005017646) #13	ENSPCTG00005017589	ENSPCTG00005017559	METTL4 (ENSPCTG00005017412) #14	NDC80 (ENSPCTG00005017125) #15	SMCHD1 (ENSPCTG00005016939) #16	EMILIN2 (ENSPCTG00005016847) #17	LPIN2 (ENSPCTG00005016430) #18	MYOM1 (ENSPCTG00005016147) #19	MYL12A (ENSPCTG00005015983) #20	TGIF1 (ENSPCTG00005015886) #22	DLGAP1 (ENSPCTG00005014046) #23	ENSPCTG00005013911	ENSPCTG00005013869	AKAIN1 (ENSPCTG00005013812) #25	ENSPCTG00005013791	ZBTB14 (ENSPCTG00005013701) #26	EPB41L3 (ENSPCTG00005013615) #27	TMEM200C (ENSPCTG00005013590) #28	L3MBTL4 (ENSPCTG00005012962) #29	ARHGAP28 (ENSPCTG00005012161) #30	LAMA1 (ENSPCTG00005010960) #32	LRRC30 (ENSPCTG00005010734) #33	ENSPCTG00005010629	PTPRM (ENSPCTG00005009359) #34	RAB12 (ENSPCTG00005009191) #35
Blue whale	MODERN SPECIES	5	CETN1 (ENSBMSG00010012744) #8	ENSBMSG00010012735	CLUL1 (ENSBMSG00010012683) #9	ENSBMSG00010012644 #10	ENOSF1 (ENSBMSG00010012605) #11	YES1 (ENSBMSG00010012578) #12	ADCYAP1 (ENSBMSG00010012565) #13	METTL4 (ENSBMSG00010012557) #14	NDC80 (ENSBMSG00010012545) #15	SMCHD1 (ENSBMSG00010012525) #16	EMILIN2 (ENSBMSG00010012492) #17	LPIN2 (ENSBMSG00010012467) #18	ENSBMSG00010012448	MYOM1 (ENSBMSG00010012336) #19	MYL12A (ENSBMSG00010012284) #20	TGIF1 (ENSBMSG00010012268) #22	ENSBMSG00010012252	DLGAP1 (ENSBMSG00010012009) #23	ENSBMSG00010011936	ENSBMSG00010011932	ENSBMSG00010011908	ENSBMSG00010011894	AKAIN1 (ENSBMSG00010011889) #25	ENSBMSG00010011884	EPB41L3 (ENSBMSG00010011724) #27	TMEM200C (ENSBMSG00010011652) #28	L3MBTL4 (ENSBMSG00010011632) #29	ARHGAP28 (ENSBMSG00010011506) #30	ENSBMSG00010011459	LAMA1 (ENSBMSG00010011398) #32	LRRC30 (ENSBMSG00010011359) #33
Pecora	ANCESTRAL SPECIES	26	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a	ENSGT00390000007058
Percora_a	ANCESTRAL SPECIES	28	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a	ENSGT00390000007058
Bovidae	ANCESTRAL SPECIES	28	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580.fb.a #37	ENSGT00940000154742.a	ENSGT00390000007058
Bovinae	ANCESTRAL SPECIES	28	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220.i #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580.fb.a #37	ENSGT00940000154742.a	ENSGT00390000007058
Bos	ANCESTRAL SPECIES	29	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786.s #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220.i #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT01100000263481.n.a.a.a.b.a.a.a.a.b.a.b.b.a.b.b	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580.fb.a #37	ENSGT00940000154742.a	ENSGT00390000007058
Bos_a	ANCESTRAL SPECIES	28	ENSGT00390000016232	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786.s #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000155230 #22	ENSGT00940000156220.i #23	ENSGT01050000245099	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020.q #34	ENSGT01100000263481.n.a.a.a.b.a.a.a.a.b.a.b.b.a.b.b	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580.fb.a #37	ENSGT00940000154742.a	ENSGT00390000007058
Wild yak	MODERN SPECIES	583									METTL4 (ENSBMUG00000001809) #14	NDC80 (ENSBMUG00000001772) #15	SMCHD1 (ENSBMUG00000001733) #16	EMILIN2 (ENSBMUG00000001647) #17	LPIN2 (ENSBMUG00000001563) #18	MYOM1 (ENSBMUG00000001469) #19	MYL12A (ENSBMUG00000001371) #20	TGIF1 (ENSBMUG00000001305) #22	DLGAP1 (ENSBMUG00000001028) #23
Domestic yak	MODERN SPECIES	13	CETN1 (ENSBGRG00000019384) #8	CLUL1 (ENSBGRG00000019406) #9	ENSBGRG00000019538 #10	ENOSF1 (ENSBGRG00000019894) #11	YES1 (ENSBGRG00000020429) #12	ADCYAP1 (ENSBGRG00000020763) #13	METTL4 (ENSBGRG00000020859) #14	NDC80 (ENSBGRG00000021015) #15	SMCHD1 (ENSBGRG00000021081) #16	ENSBGRG00000021468	EMILIN2 (ENSBGRG00000021481) #17	LPIN2 (ENSBGRG00000021549) #18	MYOM1 (ENSBGRG00000022019) #19	MYL12A (ENSBGRG00000022681) #20	ENSBGRG00000022793	TGIF1 (ENSBGRG00000022806) #22	DLGAP1 (ENSBGRG00000022857) #23	ENSBGRG00000023385	ZBTB14 (ENSBGRG00000023412) #26	EPB41L3 (ENSBGRG00000023492) #27	ENSBGRG00000023895	ARHGAP28 (ENSBGRG00000023924) #30	LAMA1 (ENSBGRG00000024286) #32	LRRC30 (ENSBGRG00000024420) #33	PTPRM (ENSBGRG00000024466) #34	ENSBGRG00000024579	RAB12 (ENSBGRG00000024618) #35	MTCL1 (ENSBGRG00000024711) #36	NDUFV2 (ENSBGRG00000024870) #37	ANKRD12 (ENSBGRG00000024894)	TWSG1 (ENSBGRG00000024927)
Bos_b	ANCESTRAL SPECIES	34	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786.s #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220.i #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000155020 #34	ENSGT01100000263481.n.a.a.a.b.a.a.a.a.b.a.b.b.a.b.b	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580.fb.a #37	ENSGT00940000154742.a	ENSGT00390000007058	ENSGT00940000154639
Hybrid Bos Indicus	MODERN SPECIES	16	CETN1 (ENSBIXG00005001842) #8	CLUL1 (ENSBIXG00005014105) #9	TYMS (ENSBIXG00005001829) #10	ENOSF1 (ENSBIXG00005014007) #11	YES1 (ENSBIXG00005013763) #12	ADCYAP1 (ENSBIXG00005013724) #13	ENSBIXG00005013699	METTL4 (ENSBIXG00005013634) #14	NDC80 (ENSBIXG00005007711) #15	SMCHD1 (ENSBIXG00005013581) #16	EMILIN2 (ENSBIXG00005013554) #17	LPIN2 (ENSBIXG00005013528) #18	MYOM1 (ENSBIXG00005013491) #19	MYL12A (ENSBIXG00005013437) #20	MYL12B (ENSBIXG00005007006) #21	TGIF1 (ENSBIXG00005006727) #22	DLGAP1 (ENSBIXG00005013290) #23	AKAIN1 (ENSBIXG00005012720) #25	ZBTB14 (ENSBIXG00005012690) #26	EPB41L3 (ENSBIXG00005012607) #27	ENSBIXG00005012473	TMEM200C (ENSBIXG00005005828) #28	ARHGAP28 (ENSBIXG00005012393) #30	LAMA1 (ENSBIXG00005011945) #32	PTPRM (ENSBIXG00005011755) #34	ENSBIXG00005006785	RAB12 (ENSBIXG00005011412) #35	MTCL1 (ENSBIXG00005011362) #36	ENSBIXG00005011194 #37	ANKRD12 (ENSBIXG00005007098)	TWSG1 (ENSBIXG00005001011)
Cow	MODERN SPECIES	16	COLEC12 (ENSBTAG00000007705) #7	CETN1 (ENSBTAG00000012320) #8	CLUL1 (ENSBTAG00000014012) #9	TYMS (ENSBTAG00000007003) #10	ENOSF1 (ENSBTAG00000007000) #11	YES1 (ENSBTAG00000001523) #12	ADCYAP1 (ENSBTAG00000020650) #13	METTL4 (ENSBTAG00000021668) #14	NDC80 (ENSBTAG00000021673) #15	SMCHD1 (ENSBTAG00000003354) #16	EMILIN2 (ENSBTAG00000003880) #17	LPIN2 (ENSBTAG00000012060) #18	MYOM1 (ENSBTAG00000019585) #19	MYL12A (ENSBTAG00000016024) #20	MYL12B (ENSBTAG00000026266) #21	TGIF1 (ENSBTAG00000007718) #22	DLGAP1 (ENSBTAG00000005372) #23	ENSBTAG00000053533	ZBTB14 (ENSBTAG00000038970) #26	EPB41L3 (ENSBTAG00000019251) #27	TMEM200C (ENSBTAG00000046396) #28	ARHGAP28 (ENSBTAG00000019036) #30	LAMA1 (ENSBTAG00000018160) #32	LRRC30 (ENSBTAG00000046046)	ENSBTAG00000048323	PTPRM (ENSBTAG00000024015) #34	RAB12 (ENSBTAG00000010356) #35	MTCL1 (ENSBTAG00000009459) #36	NDUFV2 (ENSBTAG00000004871) #37	ANKRD12 (ENSBTAG00000002755)	TWSG1 (ENSBTAG00000001805)
American bison	MODERN SPECIES	2731							METTL4 (ENSBBBG00000015068) #14	NDC80 (ENSBBBG00000000795) #15	SMCHD1 (ENSBBBG00000003527) #16	EMILIN2 (ENSBBBG00000015217) #17	LPIN2 (ENSBBBG00000015266) #18	ENSBBBG00000015278	MYOM1 (ENSBBBG00000015361) #19	MYL12A (ENSBBBG00000015416) #20	MYL12B (ENSBBBG00000015444) #21	TGIF1 (ENSBBBG00000015487) #22	ENSBBBG00000015493	ENSBBBG00000015722 #23
Caprinae	ANCESTRAL SPECIES	25	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000164030	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580.fb.a #37	ENSGT00940000154742.a	ENSGT00390000007058
Rambouillet Sheep	DUPLICATION
Rambouillet Sheep	MODERN SPECIES	15	COLEC12 (ENSOARG00020008142) #7	CETN1 (ENSOARG00020008212) #8	CLUL1 (ENSOARG00020008252) #9	TYMS (ENSOARG00020008409) #10	ENOSF1 (ENSOARG00020008665) #11	YES1 (ENSOARG00020009131) #12	ADCYAP1 (ENSOARG00020009231) #13	ENSOARG00020009340	METTL4 (ENSOARG00020009416) #14	NDC80 (ENSOARG00020009483) #15	SMCHD1 (ENSOARG00020009606) #16	LPIN2 (ENSOARG00020010928) #18	MYOM1 (ENSOARG00020011271) #19	MRCL3 (ENSOARG00020012194) #20	MYL12B (ENSOARG00020012316) #21	tgif1 (ENSOARG00020012393) #22	DLGAP1 (ENSOARG00020012505) #23	ENSOARG00020015037	AKAIN1 (ENSOARG00020015062) #25	ZBTB14 (ENSOARG00020015102) #26	EPB41L3 (ENSOARG00020015184) #27	TMEM200C (ENSOARG00020016296) #28	ENSOARG00020016325	ARHGAP28 (ENSOARG00020016377) #30	LRRC30 (ENSOARG00020017349) #33	PTPRM (ENSOARG00020017409) #34	RAB12 (ENSOARG00020018846) #35	MTCL1 (ENSOARG00020018971) #36	NDUFV2 (ENSOARG00020019449) #37	ANKRD12 (ENSOARG00020019571)	TWSG1 (ENSOARG00020019693)
Rambouillet Sheep	MODERN SPECIES	9	ARHGAP5 (ENSOARG00020005438)	ENSOARG00020005406	NUBPL (ENSOARG00020005362)	GPR33 (ENSOARG00020005349)	DTD2 (ENSOARG00020005329)	HEATR5A (ENSOARG00020005213)	HECTD1 (ENSOARG00020005016)	AP4S1 (ENSOARG00020004957)	STRN3 (ENSOARG00020004854)	COCH (ENSOARG00020004770)	SCFD1 (ENSOARG00020004656)	G2E3 (ENSOARG00020004595)	PRKD1 (ENSOARG00020004370)	FOXG1 (ENSOARG00020004300)	NOVA1 (ENSOARG00020004244)	ENSOARG00020004201 #22	ENSOARG00020004189	ENSOARG00020004153	ENSOARG00020003828	ENSOARG00020003470	ENSOARG00020003394	ENSOARG00020003344	ENSOARG00020024767	ENSOARG00020024729	ENSOARG00020024695	MCP-3 (ENSOARG00020024598)	ENSOARG00020024554	ENSOARG00020024498	LOXL1 (ENSOARG00020024474)	STOML1 (ENSOARG00020024379)	ISLR2 (ENSOARG00020024266)
Goat	MODERN SPECIES	16	CLUL1 (ENSCHIG00000012461) #9	TYMS (ENSCHIG00000000075) #10	ENOSF1 (ENSCHIG00000000109) #11	YES1 (ENSCHIG00000000143) #12	ENSCHIG00000000177	ADCYAP1 (ENSCHIG00000000212) #13	METTL4 (ENSCHIG00000000254) #14	NDC80 (ENSCHIG00000000360) #15	SMCHD1 (ENSCHIG00000000392) #16	EMILIN2 (ENSCHIG00000000425) #17	ENSCHIG00000000471	LPIN2 (ENSCHIG00000010140) #18	MYOM1 (ENSCHIG00000014135) #19	MYL12A (ENSCHIG00000016398) #20	MYL12B (ENSCHIG00000009461) #21	TGIF1 (ENSCHIG00000011164) #22	DLGAP1 (ENSCHIG00000017982) #23	ZBTB14 (ENSCHIG00000004440) #26	EPB41L3 (ENSCHIG00000023908) #27	TMEM200C (ENSCHIG00000004586) #28	ARHGAP28 (ENSCHIG00000022452) #30	ENSCHIG00000005295 #32	ENSCHIG00000010759	PTPRM (ENSCHIG00000015240) #34	RAB12 (ENSCHIG00000016103) #35	MTCL1 (ENSCHIG00000023205) #36	ENSCHIG00000015681 #37	ENSCHIG00000013412	ENSCHIG00000007393	TWSG1 (ENSCHIG00000026440)	RALBP1 (ENSCHIG00000015737)
Siberian musk deer	MODERN SPECIES	132								METTL4 (ENSMMSG00000009203) #14	ENSMMSG00000009166	NDC80 (ENSMMSG00000009103) #15	SMCHD1 (ENSMMSG00000008985) #16	EMILIN2 (ENSMMSG00000008939) #17	LPIN2 (ENSMMSG00000008712) #18	MYOM1 (ENSMMSG00000016741) #19	MYL12A (ENSMMSG00000016648) #20	TGIF1 (ENSMMSG00000016578) #22	ENSMMSG00000016560	DLGAP1 (ENSMMSG00000015330) #23	ENSMMSG00000015226	AKAIN1 (ENSMMSG00000015213) #25	ZBTB14 (ENSMMSG00000015196) #26	EPB41L3 (ENSMMSG00000015156) #27	TMEM200C (ENSMMSG00000015145) #28	ARHGAP28 (ENSMMSG00000014590) #30	LAMA1 (ENSMMSG00000014407) #32	LRRC30 (ENSMMSG00000014378) #33	PTPRM (ENSMMSG00000014281) #34	ENSMMSG00000014263	ENSMMSG00000014253	RAB12 (ENSMMSG00000014211) #35	MTCL1 (ENSMMSG00000014119) #36
Yarkand deer	MODERN SPECIES	19	CLUL1 (ENSCHYG00000017782) #9	TYMS (ENSCHYG00000017585) #10	ENOSF1 (ENSCHYG00000016711) #11	YES1 (ENSCHYG00000016589) #12	ADCYAP1 (ENSCHYG00000016541) #13	ENSCHYG00000016472	METTL4 (ENSCHYG00000016298) #14	NDC80 (ENSCHYG00000016070) #15	SMCHD1 (ENSCHYG00000015325) #16	EMILIN2 (ENSCHYG00000015216) #17	ENSCHYG00000014880 #18	ENSCHYG00000014825	MYOM1 (ENSCHYG00000014067) #19	ENSCHYG00000026009 #20	MYL12B (ENSCHYG00000025995) #21	TGIF1 (ENSCHYG00000025940) #22	DLGAP1 (ENSCHYG00000025662) #23	ENSCHYG00000025600	ENSCHYG00000025583	ENSCHYG00000025565	AKAIN1 (ENSCHYG00000025549) #25	ZBTB14 (ENSCHYG00000025527) #26	ENSCHYG00000025521	EPB41L3 (ENSCHYG00000024994) #27	ARHGAP28 (ENSCHYG00000024509) #30	LAMA1 (ENSCHYG00000024245) #32	LRRC30 (ENSCHYG00000024222) #33	PTPRM (ENSCHYG00000023397) #34	RAB12 (ENSCHYG00000023329) #35	MTCL1 (ENSCHYG00000023220) #36	ENSCHYG00000023192 #37
Camelidae	ANCESTRAL SPECIES	84			ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000164030	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a	ENSGT00390000007058
Arabian camel	MODERN SPECIES	16	USP14 (ENSCDRG00005020182)	THOC1 (ENSCDRG00005020293)	COLEC12 (ENSCDRG00005020320) #7	CLUL1 (ENSCDRG00005020348) #9	ENSCDRG00005020370 #10	ENOSF1 (ENSCDRG00005020452) #11	YES1 (ENSCDRG00005020509) #12	ADCYAP1 (ENSCDRG00005020536) #13	METTL4 (ENSCDRG00005020546) #14	NDC80 (ENSCDRG00005008870) #15	SMCHD1 (ENSCDRG00005009045) #16	EMILIN2 (ENSCDRG00005009377) #17	LPIN2 (ENSCDRG00005009560) #18	MYOM1 (ENSCDRG00005009826) #19	MYL12A (ENSCDRG00005010206) #20	TGIF1 (ENSCDRG00005010359) #22	DLGAP1 (ENSCDRG00005010492) #23	AKAIN1 (ENSCDRG00005012508) #25	ZBTB14 (ENSCDRG00005012548) #26	EPB41L3 (ENSCDRG00005012623) #27	L3MBTL4 (ENSCDRG00005013404) #29	ARHGAP28 (ENSCDRG00005013537) #30	LAMA1 (ENSCDRG00005013670) #32	ENSCDRG00005014205	PTPRM (ENSCDRG00005014275) #34	RAB12 (ENSCDRG00005015408) #35	MTCL1 (ENSCDRG00005015473) #36	NDUFV2 (ENSCDRG00005015516) #37	ANKRD12 (ENSCDRG00005015595)	TWSG1 (ENSCDRG00005015713)	RALBP1 (ENSCDRG00005015768)
Alpaca	MODERN SPECIES	3255												LPIN2 (ENSVPAG00000001900) #18	MYOM1 (ENSVPAG00000001904) #19	ENSVPAG00000001908 #20	MYL12A (ENSVPAG00000001909) #20	ENSVPAG00000001910 #22	ENSVPAG00000001911 #23
Laurasiatheria_b	ANCESTRAL SPECIES	13	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a
Carnivora	ANCESTRAL SPECIES	13	ENSGT00940000173400	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a
Felidae	ANCESTRAL SPECIES	24	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016988.a.a.a.a.a.b	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00900000143817	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a
Panthera	ANCESTRAL SPECIES	24	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016988.a.a.a.a.a.b	ENSGT00730000110997.k.a	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a	ENSGT00390000007058
Tiger	MODERN SPECIES	304							ENSPTIG00000011880	METTL4 (ENSPTIG00000010967) #14	NDC80 (ENSPTIG00000009398) #15	SMCHD1 (ENSPTIG00000008728) #16	EMILIN2 (ENSPTIG00000006880) #17	LPIN2 (ENSPTIG00000005321) #18	MYOM1 (ENSPTIG00000019775) #19	MYL12A (ENSPTIG00000019252) #20	MYL12B (ENSPTIG00000018527) #21	TGIF1 (ENSPTIG00000016983) #22	DLGAP1 (ENSPTIG00000010258) #23	AKAIN1 (ENSPTIG00000009523) #25	ZBTB14 (ENSPTIG00000009023) #26	EPB41L3 (ENSPTIG00000018818) #27	L3MBTL4 (ENSPTIG00000017321) #29	ARHGAP28 (ENSPTIG00000014723) #30
Panthera_a	ANCESTRAL SPECIES	26	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016988.a.a.a.a.a.b	ENSGT00730000110997.k.a	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a	ENSGT00390000007058
leopard	MODERN SPECIES	74	ENOSF1 (ENSPPRG00000013866) #11	YES1 (ENSPPRG00000012940) #12	ADCYAP1 (ENSPPRG00000012367) #13	ENSPPRG00000012194	ENSPPRG00000012063	ENSPPRG00000010967	METTL4 (ENSPPRG00000010770) #14	NDC80 (ENSPPRG00000010568) #15	SMCHD1 (ENSPPRG00000009812) #16	EMILIN2 (ENSPPRG00000008241) #17	LPIN2 (ENSPPRG00000008144) #18	MYOM1 (ENSPPRG00000007760) #19	MYL12A (ENSPPRG00000005441) #20	MYL12B (ENSPPRG00000005198) #21	ENSPPRG00000005105	TGIF1 (ENSPPRG00000005045) #22	DLGAP1 (ENSPPRG00000004760) #23	AKAIN1 (ENSPPRG00000004032) #25	ZBTB14 (ENSPPRG00000003993) #26	EPB41L3 (ENSPPRG00000003607) #27	L3MBTL4 (ENSPPRG00000002728) #29	ARHGAP28 (ENSPPRG00000001666) #30	LAMA1 (ENSPPRG00000023072) #32	LRRC30 (ENSPPRG00000020824) #33	PTPRM (ENSPPRG00000023610) #34	RAB12 (ENSPPRG00000024521) #35	MTCL1 (ENSPPRG00000024571) #36	NDUFV2 (ENSPPRG00000019611) #37	ANKRD12 (ENSPPRG00000018986)	TWSG1 (ENSPPRG00000018563)	RALBP1 (ENSPPRG00000018300)
lion	MODERN SPECIES	12	CETN1 (ENSPLOG00000017316) #8	CLUL1 (ENSPLOG00000017176) #9	TYMS (ENSPLOG00000017051) #10	ENOSF1 (ENSPLOG00000016798) #11	YES1 (ENSPLOG00000016606) #12	ADCYAP1 (ENSPLOG00000016557) #13	ENSPLOG00000016509	METTL4 (ENSPLOG00000016387) #14	NDC80 (ENSPLOG00000016248) #15	ENSPLOG00000016223	SMCHD1 (ENSPLOG00000015887) #16	EMILIN2 (ENSPLOG00000015733) #17	LPIN2 (ENSPLOG00000015556) #18	MYOM1 (ENSPLOG00000015128) #19	MYL12A (ENSPLOG00000014986) #20	TGIF1 (ENSPLOG00000014893) #22	DLGAP1 (ENSPLOG00000013859) #23	ENSPLOG00000013749	AKAIN1 (ENSPLOG00000013714) #25	ZBTB14 (ENSPLOG00000013682) #26	EPB41L3 (ENSPLOG00000012964) #27	TMEM200C (ENSPLOG00000012856) #28	L3MBTL4 (ENSPLOG00000012623) #29	ARHGAP28 (ENSPLOG00000012502) #30	LAMA1 (ENSPLOG00000011989) #32	LRRC30 (ENSPLOG00000011938) #33	PTPRM (ENSPLOG00000011634) #34	RAB12 (ENSPLOG00000011564) #35	MTCL1 (ENSPLOG00000011328) #36	ENSPLOG00000011275	NDUFV2 (ENSPLOG00000011256) #37
Cat	MODERN SPECIES	243	CETN1 (ENSFCAG00000009226) #8	CLUL1 (ENSFCAG00000009228) #9	TYMS (ENSFCAG00000009230) #10	ENOSF1 (ENSFCAG00000009233) #11	YES1 (ENSFCAG00000009235) #12	ADCYAP1 (ENSFCAG00000039710) #13	ENSFCAG00000032982	ENSFCAG00000039848	METTL4 (ENSFCAG00000019392) #14	NDC80 (ENSFCAG00000030389) #15	SMCHD1 (ENSFCAG00000029639) #16	EMILIN2 (ENSFCAG00000027624) #17	LPIN2 (ENSFCAG00000027974) #18	MYOM1 (ENSFCAG00000001020) #19	MYL12A (ENSFCAG00000022871) #20	TGIF1 (ENSFCAG00000029898) #22	ENSFCAG00000047431	DLGAP1 (ENSFCAG00000011418) #23	AKAIN1 (ENSFCAG00000041689) #25	ZBTB14 (ENSFCAG00000023573) #26	EPB41L3 (ENSFCAG00000011079) #27	TMEM200C (ENSFCAG00000043742) #28	L3MBTL4 (ENSFCAG00000031842) #29	ARHGAP28 (ENSFCAG00000015368) #30	LAMA1 (ENSFCAG00000008650) #32	LRRC30 (ENSFCAG00000003109) #33	PTPRM (ENSFCAG00000013023) #34	RAB12 (ENSFCAG00000027710) #35	MTCL1 (ENSFCAG00000005803) #36	NDUFV2 (ENSFCAG00000036877) #37	ANKRD12 (ENSFCAG00000043867)
Caniformia	ANCESTRAL SPECIES	9	ENSGT00940000173400	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a	ENSGT00390000007058
Caniformia_b	ANCESTRAL SPECIES	25	ENSGT00940000173400	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a	ENSGT00390000007058
Mustelinae	ANCESTRAL SPECIES	5	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a	ENSGT00390000007058
Ferret	MODERN SPECIES	170	CLUL1 (ENSMPUG00000005429) #9	TYMS (ENSMPUG00000005419) #10	ENOSF1 (ENSMPUG00000005407) #11	YES1 (ENSMPUG00000005394) #12	ADCYAP1 (ENSMPUG00000005386) #13	ENSMPUG00000019883	METTL4 (ENSMPUG00000005375) #14	NDC80 (ENSMPUG00000005356) #15	SMCHD1 (ENSMPUG00000005190) #16	EMILIN2 (ENSMPUG00000005128) #17	LPIN2 (ENSMPUG00000005110) #18	MYOM1 (ENSMPUG00000005090) #19	MYL12A (ENSMPUG00000005057) #20	ENSMPUG00000005055	MYL12B (ENSMPUG00000005011) #21	TGIF1 (ENSMPUG00000005004) #22	DLGAP1 (ENSMPUG00000004995) #23	ZBTB14 (ENSMPUG00000004990) #26	EPB41L3 (ENSMPUG00000004981) #27	ENSMPUG00000019882 #28	L3MBTL4 (ENSMPUG00000004964) #29	ENSMPUG00000004959	ENSMPUG00000004930	ARHGAP28 (ENSMPUG00000004917) #30	LAMA1 (ENSMPUG00000004879) #32	LRRC30 (ENSMPUG00000019881) #33	PTPRM (ENSMPUG00000004846) #34	RAB12 (ENSMPUG00000004836) #35	ENSMPUG00000004833	ENSMPUG00000004794	MTCL1 (ENSMPUG00000004784) #36
American mink	MODERN SPECIES	31						ENSNVIG00000011735	ENSNVIG00000011724	METTL4 (ENSNVIG00000011683) #14	NDC80 (ENSNVIG00000011663) #15	SMCHD1 (ENSNVIG00000011639) #16	EMILIN2 (ENSNVIG00000011628) #17	LPIN2 (ENSNVIG00000011608) #18	MYOM1 (ENSNVIG00000011397) #19	MYL12A (ENSNVIG00000011359) #20	MYL12B (ENSNVIG00000011345) #21	TGIF1 (ENSNVIG00000011316) #22	DLGAP1 (ENSNVIG00000011137) #23	ENSNVIG00000011129	AKAIN1 (ENSNVIG00000011118) #25	ZBTB14 (ENSNVIG00000011093) #26	EPB41L3 (ENSNVIG00000010941) #27	L3MBTL4 (ENSNVIG00000010862) #29	ARHGAP28 (ENSNVIG00000010825) #30	LAMA1 (ENSNVIG00000010722) #32	LRRC30 (ENSNVIG00000010703) #33	PTPRM (ENSNVIG00000010512) #34	RAB12 (ENSNVIG00000010489) #35	MTCL1 (ENSNVIG00000010451) #36	NDUFV2 (ENSNVIG00000010419) #37	ANKRD12 (ENSNVIG00000010366)	TWSG1 (ENSNVIG00000010343)
Ursidae	ANCESTRAL SPECIES	23	ENSGT00940000173400	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a	ENSGT00390000007058	ENSGT00940000154639
Ursus	ANCESTRAL SPECIES	25	ENSGT00940000173400	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a	ENSGT00390000007058	ENSGT00940000154639
American black bear	DUPLICATION
American black bear	MODERN SPECIES	9323																ENSUAMG00000002428 #22
American black bear	MODERN SPECIES	9361																ENSUAMG00000002687 #22
Polar bear	MODERN SPECIES	96	CETN1 (ENSUMAG00000019682) #8	CLUL1 (ENSUMAG00000019680) #9	TYMS (ENSUMAG00000019677) #10	ENOSF1 (ENSUMAG00000019674) #11	YES1 (ENSUMAG00000019673) #12	ENSUMAG00000019669	ADCYAP1 (ENSUMAG00000019664) #13	METTL4 (ENSUMAG00000019651) #14	NDC80 (ENSUMAG00000019602) #15	SMCHD1 (ENSUMAG00000019575) #16	EMILIN2 (ENSUMAG00000019556) #17	LPIN2 (ENSUMAG00000019544) #18	MYOM1 (ENSUMAG00000019140) #19	MYL12A (ENSUMAG00000019097) #20	MYL12B (ENSUMAG00000019096) #21	TGIF1 (ENSUMAG00000019091) #22	DLGAP1 (ENSUMAG00000018976) #23	AKAIN1 (ENSUMAG00000018955) #25	ZBTB14 (ENSUMAG00000018942) #26	EPB41L3 (ENSUMAG00000018925) #27	L3MBTL4 (ENSUMAG00000018879) #29	ARHGAP28 (ENSUMAG00000018815) #30	LAMA1 (ENSUMAG00000018773) #32	LRRC30 (ENSUMAG00000018751) #33	PTPRM (ENSUMAG00000018739) #34	ENSUMAG00000018727 #35	MTCL1 (ENSUMAG00000018721) #36	NDUFV2 (ENSUMAG00000018713) #37	ANKRD12 (ENSUMAG00000018698)	TWSG1 (ENSUMAG00000018695)	RALBP1 (ENSUMAG00000018688)
Giant Panda	MODERN SPECIES	5	CETN1 (ENSAMEG00000019837) #8	CLUL1 (ENSAMEG00000006626) #9	ENSAMEG00000025934	TYMS (ENSAMEG00000006607) #10	ENOSF1 (ENSAMEG00000006581) #11	YES1 (ENSAMEG00000006544) #12	ADCYAP1 (ENSAMEG00000006537) #13	METTL4 (ENSAMEG00000010116) #14	NDC80 (ENSAMEG00000010069) #15	SMCHD1 (ENSAMEG00000010022) #16	EMILIN2 (ENSAMEG00000009998) #17	LPIN2 (ENSAMEG00000009951) #18	MYOM1 (ENSAMEG00000010570) #19	MYL12A (ENSAMEG00000026960) #20	MYL12B (ENSAMEG00000028707) #21	TGIF1 (ENSAMEG00000012674) #22	DLGAP1 (ENSAMEG00000012677) #23	AKAIN1 (ENSAMEG00000020013) #25	ZBTB14 (ENSAMEG00000020014) #26	EPB41L3 (ENSAMEG00000000602) #27	L3MBTL4 (ENSAMEG00000006857) #29	ARHGAP28 (ENSAMEG00000006845) #30	LAMA1 (ENSAMEG00000007475) #32	LRRC30 (ENSAMEG00000018805) #33	PTPRM (ENSAMEG00000007456) #34	RAB12 (ENSAMEG00000007452) #35	MTCL1 (ENSAMEG00000007437) #36	NDUFV2 (ENSAMEG00000007415) #37	ANKRD12 (ENSAMEG00000007392)	TWSG1 (ENSAMEG00000028641)	ENSAMEG00000007499
Canidae	ANCESTRAL SPECIES	1	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016292.i.b	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a	ENSGT00390000007058
Red fox	MODERN SPECIES	55						ENSVVUG00000006975	METTL4 (ENSVVUG00000006988) #14	NDC80 (ENSVVUG00000007016) #15	ENSVVUG00000007254	SMCHD1 (ENSVVUG00000007320) #16	EMILIN2 (ENSVVUG00000008678) #17	LPIN2 (ENSVVUG00000008689) #18	MYOM1 (ENSVVUG00000008791) #19	ENSVVUG00000009225 #20	MYL12B (ENSVVUG00000009238) #21	TGIF1 (ENSVVUG00000009272) #22	DLGAP1 (ENSVVUG00000009317) #23	ZBTB14 (ENSVVUG00000010107) #26	EPB41L3 (ENSVVUG00000010125) #27	ENSVVUG00000010208	L3MBTL4 (ENSVVUG00000010230) #29	ARHGAP28 (ENSVVUG00000010346) #30	ENSVVUG00000010487	LAMA1 (ENSVVUG00000010548) #32	ENSVVUG00000011552	LRRC30 (ENSVVUG00000011556) #33	PTPRM (ENSVVUG00000011599) #34	RAB12 (ENSVVUG00000011748) #35	MTCL1 (ENSVVUG00000011763) #36	NDUFV2 (ENSVVUG00000011795) #37	ANKRD12 (ENSVVUG00000011805)
Canis_lupus	ANCESTRAL SPECIES	4	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016292.i.b	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000153607.c.b #21	ENSGT00940000155458.pc	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a	ENSGT00390000007058
Dog	MODERN SPECIES	35	ENOSF1 (ENSCAFG00845002065) #11	YES1 (ENSCAFG00845002202) #12	ADCYAP1 (ENSCAFG00845002272) #13	ENSCAFG00845002314	ENSCAFG00845002328	ENSCAFG00845002349	METTL4 (ENSCAFG00845002376) #14	NDC80 (ENSCAFG00845002475) #15	SMCHD1 (ENSCAFG00845002514) #16	EMILIN2 (ENSCAFG00845002641) #17	LPIN2 (ENSCAFG00845002673) #18	MYOM1 (ENSCAFG00845002811) #19	ENSCAFG00845002989 #20	MYL12B (ENSCAFG00845003004) #21	ENSCAFG00845003014	TGIF1 (ENSCAFG00845003025) #22	DLGAP1 (ENSCAFG00845003202) #23	AKAIN1 (ENSCAFG00845003415) #25	ZBTB14 (ENSCAFG00845003431) #26	EPB41L3 (ENSCAFG00845003573) #27	TMEM200C (ENSCAFG00845003836) #28	L3MBTL4 (ENSCAFG00845003867) #29	ARHGAP28 (ENSCAFG00845003916) #30	ENSCAFG00845003930	LAMA1 (ENSCAFG00845004002) #32	ENSCAFG00845004087	LRRC30 (ENSCAFG00845004098) #33	PTPRM (ENSCAFG00845004181) #34	RAB12 (ENSCAFG00845004291) #35	MTCL1 (ENSCAFG00845004330) #36	ENSCAFG00845004451
Dingo	DUPLICATION
Dingo	MODERN SPECIES	271	YES1 (ENSCAFG00020018034) #12	ADCYAP1 (ENSCAFG00020020268) #13	ENSCAFG00020020280	ENSCAFG00020020296	ENSCAFG00020020307	ENSCAFG00020020312	METTL4 (ENSCAFG00020020313) #14	NDC80 (ENSCAFG00020020317) #15	SMCHD1 (ENSCAFG00020020366) #16	EMILIN2 (ENSCAFG00020020531) #17	LPIN2 (ENSCAFG00020020533) #18	MYOM1 (ENSCAFG00020020583) #19	ENSCAFG00020020906 #20	MYL12B (ENSCAFG00020020908) #21	ENSCAFG00020020914	TGIF1 (ENSCAFG00020020919) #22	DLGAP1 (ENSCAFG00020020947) #23	ENSCAFG00020021056	ENSCAFG00020021066	ZBTB14 (ENSCAFG00020021068) #26	ENSCAFG00020021069	EPB41L3 (ENSCAFG00020021170) #27	L3MBTL4 (ENSCAFG00020022524) #29	ENSCAFG00020022527	ENSCAFG00020022528	ENSCAFG00020022530 #30	ENSCAFG00020022531 #32	ENSCAFG00020022535 #32	ENSCAFG00020022536	LRRC30 (ENSCAFG00020022537) #33	PTPRM (ENSCAFG00020022563) #34
Dingo	DUPLICATION
Dingo	MODERN SPECIES	343	ENSCAFG00020005571	RBM12 (ENSCAFG00020005650)	NFS1 (ENSCAFG00020005653)	ROMO1 (ENSCAFG00020005664)	ENSCAFG00020005671	RBM39 (ENSCAFG00020005676)	PHF20 (ENSCAFG00020005691)	SCAND1 (ENSCAFG00020005777)	ENSCAFG00020005787	EPB41L1 (ENSCAFG00020005807)	AAR2 (ENSCAFG00020005856)	ENSCAFG00020005862	ENSCAFG00020005865	ENSCAFG00020005870	ENSCAFG00020005874	ENSCAFG00020005881 #22	RAB5IF (ENSCAFG00020005885)	SLA2 (ENSCAFG00020005890)	ENSCAFG00020005893	DSN1 (ENSCAFG00020005917)	SOGA1 (ENSCAFG00020005922) ##36	ENSCAFG00020005973	TLDC2 (ENSCAFG00020005977)	SAMHD1 (ENSCAFG00020006094)	RBL1 (ENSCAFG00020012391)	ENSCAFG00020012444	ENSCAFG00020012473	RPN2 (ENSCAFG00020012479)	GHRH (ENSCAFG00020012483) ##13	MANBAL (ENSCAFG00020012487)	SRC (ENSCAFG00020012489)
Dingo	MODERN SPECIES	401	ENSCAFG00020005120	LRTM1 (ENSCAFG00020005138)	ENSCAFG00020005144	ENSCAFG00020005180	WNT5A (ENSCAFG00020005184)	ERC2 (ENSCAFG00020005226)	CCDC66 (ENSCAFG00020005515)	TASOR (ENSCAFG00020005538)	ARHGEF3 (ENSCAFG00020005760)	IL17RD (ENSCAFG00020005794)	HESX1 (ENSCAFG00020005831)	ENSCAFG00020005837	APPL1 (ENSCAFG00020005864)	ASB14 (ENSCAFG00020006536)	DNAH12 (ENSCAFG00020006557)	ENSCAFG00020006685 #22	PDE12 (ENSCAFG00020006692)	ARF4 (ENSCAFG00020006698)	DENND6A (ENSCAFG00020006723)	SLMAP (ENSCAFG00020007038)	FLNB (ENSCAFG00020008260)	ENSCAFG00020010019	DNASE1L3 (ENSCAFG00020010119)	ABHD6 (ENSCAFG00020010122)	RPP14 (ENSCAFG00020010128)	HTD2 (ENSCAFG00020010130)	PXK (ENSCAFG00020010131)	PDHB (ENSCAFG00020010134)	KCTD6 (ENSCAFG00020010154)	ACOX2 (ENSCAFG00020010158)	FAM107A (ENSCAFG00020010161)
Laurasiatheria_c	ANCESTRAL SPECIES	24	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT01020000231229	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33
Chiroptera	ANCESTRAL SPECIES	26	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT01020000231229	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33
Megabat	MODERN SPECIES	554											EMILIN2 (ENSPVAG00000007219) #17	LPIN2 (ENSPVAG00000007221) #18	MYOM1 (ENSPVAG00000007223) #19	MYL12A (ENSPVAG00000007226) #20	MYL12B (ENSPVAG00000007227) #21	TGIF1 (ENSPVAG00000007228) #22
Microchiroptera	ANCESTRAL SPECIES	26	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.d ##21	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000162359	ENSGT01020000231229	ENSGT00940000164798	ENSGT00940000162721	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35
Microbat	MODERN SPECIES	995								METTL4 (ENSMLUG00000003351) #14	NDC80 (ENSMLUG00000003354) #15	SMCHD1 (ENSMLUG00000003378) #16	EMILIN2 (ENSMLUG00000003397) #17	LPIN2 (ENSMLUG00000003403) #18	ENSMLUG00000029548	MYOM1 (ENSMLUG00000003417) #19	MYL12B (ENSMLUG00000005189) #21	TGIF1 (ENSMLUG00000025199) #22	DLGAP1 (ENSMLUG00000012142) #23	ENSMLUG00000030528	ZBTB14 (ENSMLUG00000016123) #26	EPB41L3 (ENSMLUG00000016125) #27	L3MBTL4 (ENSMLUG00000002011) #29	ENSMLUG00000023508	ARHGAP28 (ENSMLUG00000005314) #30	LAMA1 (ENSMLUG00000004002) #32	LRRC30 (ENSMLUG00000004630) #33	PTPRM (ENSMLUG00000016507) #34	RAB12 (ENSMLUG00000002883) #35	MTCL1 (ENSMLUG00000002889) #36	ENSMLUG00000013891	NDUFV2 (ENSMLUG00000013503) #37	ANKRD12 (ENSMLUG00000008632)
Greater horseshoe bat	MODERN SPECIES	10	TYMS (ENSRFEG00010017484) #10	YES1 (ENSRFEG00010017283) #12	ADCYAP1 (ENSRFEG00010017231) #13	ENSRFEG00010017213	ENSRFEG00010017153	ENSRFEG00010017105	ENSRFEG00010017086	METTL4 (ENSRFEG00010017011) #14	NDC80 (ENSRFEG00010016810) #15	SMCHD1 (ENSRFEG00010016132) #16	EMILIN2 (ENSRFEG00010016098) #17	LPIN2 (ENSRFEG00010016004) #18	MYOM1 (ENSRFEG00010014872) #19	ENSRFEG00010014795 ##21	MYL12B (ENSRFEG00010014767) #21	TGIF1 (ENSRFEG00010014659) #22	DLGAP1 (ENSRFEG00010014146) #23	AKAIN1 (ENSRFEG00010014046) #25	ENSRFEG00010014022	ZBTB14 (ENSRFEG00010013973) #26	EPB41L3 (ENSRFEG00010012327) #27	ENSRFEG00010012203	TMEM200C (ENSRFEG00010012187) #28	L3MBTL4 (ENSRFEG00010011944) #29	ENSRFEG00010011861	ARHGAP28 (ENSRFEG00010011354) #30	LAMA1 (ENSRFEG00010011271) #32	LRRC30 (ENSRFEG00010011243) #33	PTPRM (ENSRFEG00010010873) #34	RAB12 (ENSRFEG00010010724) #35	ENSRFEG00010010493
Equus	ANCESTRAL SPECIES	36	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313.i #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a.d #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000155638	ENSGT00950000182917.b	ENSGT00390000000444	ENSGT00940000155295	ENSGT01090000263359	ENSGT00390000017571	ENSGT00940000162118	ENSGT00940000159287	ENSGT00950000182922.a.a.a.b.a.b.a.b.b	ENSGT00940000156352	ENSGT00940000160354	ENSGT00390000011620.a.a.a
Horse	MODERN SPECIES	29	COLEC12 (ENSECAG00000018963) #7	CETN1 (ENSECAG00000058680) #8	CLUL1 (ENSECAG00000022352) #9	TYMS (ENSECAG00000023203) #10	ENOSF1 (ENSECAG00000012547) #11	YES1 (ENSECAG00000021666) #12	ADCYAP1 (ENSECAG00000033061) #13	METTL4 (ENSECAG00000006301) #14	NDC80 (ENSECAG00000008827) #15	SMCHD1 (ENSECAG00000014144) #16	EMILIN2 (ENSECAG00000057052) #17	LPIN2 (ENSECAG00000006280) #18	MYOM1 (ENSECAG00000013468) #19	MYL12A (ENSECAG00000051472) #20	MYL12B (ENSECAG00000038682) #21	TGIF1 (ENSECAG00000011078) #22	DLGAP1 (ENSECAG00000013739) #23	AKAIN1 (ENSECAG00000033364) #25	ZBTB14 (ENSECAG00000019218) #26	LAMA3 (ENSECAG00000021277)	ENSECAG00000054828	ENSECAG00000043961	TTC39C (ENSECAG00000010545)	CABYR (ENSECAG00000014148)	OSBPL1A (ENSECAG00000015182)	ENSECAG00000056623	IMPACT (ENSECAG00000020098)	HRH4 (ENSECAG00000006494)	ZNF521 (ENSECAG00000006546)	ENSECAG00000004392	ENSECAG00000049495
Donkey	MODERN SPECIES	27	ENSEASG00005026491	ENSEASG00005029646	ENSEASG00005034896	ENSEASG00005026337	ENSEASG00005025616	ENSEASG00005026849	ENSEASG00005024394	ENSEASG00005002722 #14	ENSEASG00005002730 #15	SMCHD1 (ENSEASG00005002865) #16	EMILIN2 (ENSEASG00005003573) #17	ENSEASG00005003579 #18	MYOM1 (ENSEASG00005003603) #19	MYL12A (ENSEASG00005023571) #20	MYL12B (ENSEASG00005029990) #21	TGIF1 (ENSEASG00005026544) #22	ENSEASG00005024534 #23	DLGAP1 (ENSEASG00005003653) #23	AKAIN1 (ENSEASG00005038786) #25	ENSEASG00005004330 #26	ENSEASG00005004417	ENSEASG00005004519	ENSEASG00005029371	ENSEASG00005004560	ENSEASG00005004612	ENSEASG00005005115	IMPACT (ENSEASG00005005120)	HRH4 (ENSEASG00005029823)	ZNF521 (ENSEASG00005005129)	ENSEASG00005005135	PSMA8 (ENSEASG00005005145)
Atlantogenata	ANCESTRAL SPECIES	22	ENSGT00950000183074.A #7	ENSGT00940000157209.jb #8	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a	ENSGT00390000007058	ENSGT00940000154639
Xenarthra	ANCESTRAL SPECIES	681											ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23
Sloth	MODERN SPECIES	9416																TGIF1 (ENSCHOG00000000162) #22
Armadillo	MODERN SPECIES	3246										EMILIN2 (ENSDNOG00000019093) #17	LPIN2 (ENSDNOG00000016612) #18	MYOM1 (ENSDNOG00000016617) #19	MYL12A (ENSDNOG00000047523) #20	MYL12B (ENSDNOG00000039005) #21	ENSDNOG00000038003	TGIF1 (ENSDNOG00000046211) #22	ENSDNOG00000038018 #23
Afrotheria	ANCESTRAL SPECIES	169				ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30
Tenrec	MODERN SPECIES	6974																TGIF1 (ENSETEG00000011891) #22
Afrotheria_a	ANCESTRAL SPECIES	171				ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30
Elephant	MODERN SPECIES	375	ENSLAFG00000029660	TYMS (ENSLAFG00000014910) #10	ENOSF1 (ENSLAFG00000014922) #11	YES1 (ENSLAFG00000002384) #12	ADCYAP1 (ENSLAFG00000014384) #13	METTL4 (ENSLAFG00000004505) #14	NDC80 (ENSLAFG00000004506) #15	ENSLAFG00000009375 #16	ENSLAFG00000009381 #16	EMILIN2 (ENSLAFG00000023146) #17	LPIN2 (ENSLAFG00000009393) #18	MYOM1 (ENSLAFG00000014655) #19	MYL12A (ENSLAFG00000011627) #20	MYL12B (ENSLAFG00000004353) #21	ENSLAFG00000030231	TGIF1 (ENSLAFG00000002354) #22	DLGAP1 (ENSLAFG00000002355) #23	ENSLAFG00000028371	ZBTB14 (ENSLAFG00000004952) #26	ENSLAFG00000026951	EPB41L3 (ENSLAFG00000006036) #27	ENSLAFG00000013989 #28	ARHGAP28 (ENSLAFG00000008729) #30	MC2R (ENSLAFG00000011821)	ENSLAFG00000014904 #9	CETN1 (ENSLAFG00000026433) #8	COLEC12 (ENSLAFG00000009593) #7	THOC1 (ENSLAFG00000009585)	USP14 (ENSLAFG00000009582)	ROCK1 (ENSLAFG00000015369)	GREB1L (ENSLAFG00000028717)
Hyrax	MODERN SPECIES	9941																TGIF1 (ENSPCAG00000003371) #22
Marsupialia	ANCESTRAL SPECIES	1	ENSGT00390000016232	ENSGT00950000183074.A #7	ENSGT00530000063668.A #9	ENSGT00390000014786.m.a #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00940000166801	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019.b #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a
Opossum	DUPLICATION
Opossum	MODERN SPECIES	5	ENSMODG00000005925	C16orf89 (ENSMODG00000005894)	NAGPA (ENSMODG00000005871)	ENSMODG00000005862	ENSMODG00000005853	ENSMODG00000005839	RBFOX1 (ENSMODG00000005826)	ENSMODG00000024767	ENSMODG00000027367	TMEM114 (ENSMODG00000005797)	METTL22 (ENSMODG00000005792)	ABAT (ENSMODG00000005781)	TMEM186 (ENSMODG00000005744)	ENSMODG00000005737	ENSMODG00000049451	ENSMODG00000042650 #22	USP7 (ENSMODG00000005702)	HAPSTR1 (ENSMODG00000005378)	ENSMODG00000039411	GRIN2A (ENSMODG00000005363)	ENSMODG00000005286	ENSMODG00000044837	EMP2 (ENSMODG00000038065)	TEKT5 (ENSMODG00000005259)	NUBP1 (ENSMODG00000005249)	TVP23A (ENSMODG00000005174)	CIITA (ENSMODG00000005234)	DEXI (ENSMODG00000024780)	CLEC16A (ENSMODG00000005166)	PRM1 (ENSMODG00000005135)	RMI2 (ENSMODG00000005130)
Opossum	MODERN SPECIES	2	ENSMODG00000021479 #10	ENOSF1 (ENSMODG00000025620) #11	ENSMODG00000021477 #12	ENSMODG00000041633	ADCYAP1 (ENSMODG00000046330) #13	METTL4 (ENSMODG00000021472) #14	NDC80 (ENSMODG00000021471) #15	ENSMODG00000021469 #16	EMILIN2 (ENSMODG00000021467) #17	LPIN2 (ENSMODG00000021466) #18	ENSMODG00000036642	MYOM1 (ENSMODG00000021465) #19	MYL12A (ENSMODG00000049524) #20	MYL12B (ENSMODG00000043700) #20	ENSMODG00000049373	ENSMODG00000021462 #22	DLGAP1 (ENSMODG00000021461) #23	ENSMODG00000029291	ENSMODG00000043430	ENSMODG00000046796	ENSMODG00000048916	ZBTB14 (ENSMODG00000021460) #26	EPB41L3 (ENSMODG00000021459) #27	ENSMODG00000027341	TMEM200C (ENSMODG00000024724) #28	L3MBTL4 (ENSMODG00000021457) #29	ARHGAP28 (ENSMODG00000021455) #30	LAMA1 (ENSMODG00000021454) #32	ENSMODG00000024716	PTPRM (ENSMODG00000021453) #34	ENSMODG00000049583
Marsupialia_b	ANCESTRAL SPECIES	2	ENSGT00390000016232	ENSGT00950000183074.A #7	ENSGT00530000063668.A #9	ENSGT00390000014786.m.a #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00940000166801	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019.b #33	ENSGT00940000155020 #34	ENSGT00940000159325.j #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a.j
Diprotodontia	ANCESTRAL SPECIES	1	ENSGT00390000009615	ENSGT00390000016232	ENSGT00950000183074.A #7	ENSGT00530000063668.A #9	ENSGT00390000014786.m.a #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019.b #33	ENSGT00940000155020 #34	ENSGT00940000159325.j #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a.j	ENSGT00390000007058
Diprotodontia_a	ANCESTRAL SPECIES		ENSGT00390000009615	ENSGT00390000016232	ENSGT00950000183074.A #7	ENSGT00530000063668.A #9	ENSGT00390000014786.m.a.a #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158264.a #29	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019.b #33	ENSGT00940000155020 #34	ENSGT00940000159325.j #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a.j	ENSGT00390000007058
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1199	ENSVURG00010010437 #10	ENSVURG00010010669 #11	ENSVURG00010010688 #12	ENSVURG00010010705	ENSVURG00010010724 #13	ENSVURG00010010765	ENSVURG00010010802	ENSVURG00010010870	ENSVURG00010010889 #14	ENSVURG00010010920 #15	ENSVURG00010010980 #16	ENSVURG00010011114 #17	ENSVURG00010011130 #18	MYOM1 (ENSVURG00010011183) #19	ENSVURG00010011282 #20	ENSVURG00010011329 #22	ENSVURG00010011423 #23	ENSVURG00010012456 #25	ENSVURG00010012467 #26	ENSVURG00010012515 #27	ENSVURG00010012610 #29	ENSVURG00010012663 #30	ENSVURG00010012770 #32	ENSVURG00010013130 #33	ENSVURG00010013160 #34	ENSVURG00010013209 #35	ENSVURG00010013218 #36	ENSVURG00010013231 #37	ENSVURG00010013243	ENSVURG00010013255	ENSVURG00010013266
Common wonbat	MODERN SPECIES	1048	ENSVURG00010023183 #9	ENSVURG00010023168 #10	ENSVURG00010023157 #11	ENSVURG00010023153	ENSVURG00010023149 #12	ENSVURG00010023146 #13	ENSVURG00010023144	ENSVURG00010023135	ENSVURG00010023131	ENSVURG00010023124 #14	ENSVURG00010023117 #15	ENSVURG00010023083 #16	ENSVURG00010023064 #17	ENSVURG00010023043 #18	ENSVURG00010023030 #20	ENSVURG00010023018 #22	ENSVURG00010022798 #23	ENSVURG00010022752 #25	ENSVURG00010022745 #26	ENSVURG00010022705 #27	ENSVURG00010022676 #29	ENSVURG00010022667 #30	ENSVURG00010022545 #32	ENSVURG00010022493 #33	ENSVURG00010022483 #34	ENSVURG00010022474 #35	ENSVURG00010022463 #36	ENSVURG00010022449 #37	ENSVURG00010022438	ENSVURG00010022431	ENSVURG00010022425
koala	MODERN SPECIES	207	THOC1 (ENSPCIG00000026942)	COLEC12 (ENSPCIG00000016565) #7	CLUL1 (ENSPCIG00000015630) #9	ENSPCIG00000031228 #10	ENSPCIG00000015639 #10	ENOSF1 (ENSPCIG00000015652) #11	YES1 (ENSPCIG00000015661) #12	ENSPCIG00000015925 #13	METTL4 (ENSPCIG00000016096) #14	NDC80 (ENSPCIG00000016100) #15	SMCHD1 (ENSPCIG00000016236) #16	EMILIN2 (ENSPCIG00000016780) #17	LPIN2 (ENSPCIG00000016789) #18	MYOM1 (ENSPCIG00000016799) #19	MYL12A (ENSPCIG00000016806) #20	TGIF1 (ENSPCIG00000016809) #22	ENSPCIG00000032039 #23
Wallaby	MODERN SPECIES	10278																TGIF1 (ENSMEUG00000008263) #22
Tasmanian devil	MODERN SPECIES		ENSSHAG00000014829	COLEC12 (ENSSHAG00000015149) #7	CLUL1 (ENSSHAG00000001520) #9	ENSSHAG00000003102 #10	ENOSF1 (ENSSHAG00000028284) #11	YES1 (ENSSHAG00000024195) #12	ADCYAP1 (ENSSHAG00000007533) #13	METTL4 (ENSSHAG00000025630) #14	NDC80 (ENSSHAG00000000858) #15	SMCHD1 (ENSSHAG00000002525) #16	EMILIN2 (ENSSHAG00000006785) #17	LPIN2 (ENSSHAG00000007520) #18	MYOM1 (ENSSHAG00000008942) #19	MYL12A (ENSSHAG00000025915) #20	MYL12B (ENSSHAG00000023112) #21	TGIF1 (ENSSHAG00000030511) #22	DLGAP1 (ENSSHAG00000012019) #23	ENSSHAG00000024123	AKAIN1 (ENSSHAG00000021908) #25	EPB41L3 (ENSSHAG00000007294) #27	ENSSHAG00000028600	TMEM200C (ENSSHAG00000021490) #28	L3MBTL4 (ENSSHAG00000012679) #29	ENSSHAG00000024209 #30	ENSSHAG00000009354 #30	LAMA1 (ENSSHAG00000009924) #32	LRRC30 (ENSSHAG00000011744) #33	PTPRM (ENSSHAG00000007526) #34	RAB12 (ENSSHAG00000030836) #35	MTCL1 (ENSSHAG00000005041) #36	NDUFV2 (ENSSHAG00000021984) #37
Platypus	DUPLICATION
Platypus	MODERN SPECIES	19	ABHD16B (ENSOANG00000004927)	ZBTB46 (ENSOANG00000004930)	ENSOANG00000004931	ENSOANG00000049134	ZGPAT (ENSOANG00000004932)	ARFRP1 (ENSOANG00000043071)	ENSOANG00000004934	RTEL1 (ENSOANG00000004935)	STMN3 (ENSOANG00000004938)	GMEB2 (ENSOANG00000004939)	HELZ2 (ENSOANG00000043462)	ENSOANG00000004942	FNDC11 (ENSOANG00000041710)	RAB5IF (ENSOANG00000041680)	MYL9 (ENSOANG00000004944)	ENSOANG00000051253 #22	DLGAP4 (ENSOANG00000004946)	ENSOANG00000038341	ENSOANG00000002758	SRSF6 (ENSOANG00000008955)	L3MBTL1 (ENSOANG00000014344)	TOX2 (ENSOANG00000014345)	RALGAPB (ENSOANG00000014346)	CHD6 (ENSOANG00000014347)	ENSOANG00000014348 ##17	LPIN3 (ENSOANG00000014349)	PLCG1 (ENSOANG00000047399)	TOP1 (ENSOANG00000014354)	MAFB (ENSOANG00000044175)	DHX35 (ENSOANG00000015094)	FAM83D (ENSOANG00000044824)
Platypus	MODERN SPECIES	16	ENSOANG00000042482	TET3 (ENSOANG00000039284)	ENSOANG00000007694	ENSOANG00000000460	ENSOANG00000050199	ENSOANG00000040047	ENSOANG00000021882	ENSOANG00000048785 #13	METTL4 (ENSOANG00000010844) #14	NDC80 (ENSOANG00000010845) #15	SMCHD1 (ENSOANG00000002708) #16	EMILIN2 (ENSOANG00000008916) #17	LPIN2 (ENSOANG00000008912) #18	MYOM1 (ENSOANG00000039529) #19	ENSOANG00000048757 ##21	TGIF1 (ENSOANG00000014153) #22	DLGAP1 (ENSOANG00000036705) #23	ENSOANG00000002065	AKAIN1 (ENSOANG00000046211) #25	ZBTB14 (ENSOANG00000037703) #26	EPB41L3 (ENSOANG00000003826) #27	ENSOANG00000041734	ENSOANG00000051289 #28	L3MBTL4 (ENSOANG00000043216) #29	ENSOANG00000044493 #30	ENSOANG00000000436 #30	LAMA1 (ENSOANG00000000432) #32	LRRC30 (ENSOANG00000014739) #33	PTPRM (ENSOANG00000002405) #34	RAB12 (ENSOANG00000038672) #35	MTCL1 (ENSOANG00000015008) #36
Sauria	ANCESTRAL SPECIES		ENSGT00390000016232	ENSGT00950000183074.A #7	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.d ##21	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00940000166801	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a	ENSGT00390000007058
Archelosauria	ANCESTRAL SPECIES	5	ENSGT00390000016232	ENSGT00950000183074.A #7	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.d ##21	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00940000166801	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a	ENSGT00390000007058
Cryptodira	ANCESTRAL SPECIES	7	ENSGT00390000009615	ENSGT00390000016232	ENSGT00950000183074.A #7	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386.k #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.d ##21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00940000166801	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a	ENSGT00390000007058
Chinese turtle	MODERN SPECIES	2237	THOC1 (ENSPSIG00000007691)	COLEC12 (ENSPSIG00000007643) #7	CLUL1 (ENSPSIG00000007587) #9	TYMS (ENSPSIG00000007582) #10	ENOSF1 (ENSPSIG00000007577) #11	YES1 (ENSPSIG00000007281) #12	ADCYAP1 (ENSPSIG00000007275) #13	METTL4 (ENSPSIG00000007210) #14	NDC80 (ENSPSIG00000006812) #15	SMCHD1 (ENSPSIG00000006146) #16	EMILIN2 (ENSPSIG00000006081) #17	LPIN2 (ENSPSIG00000005769) #18	MYOM1 (ENSPSIG00000005684) #19	ENSPSIG00000005666 ##21	ENSPSIG00000005662 ##21	TGIF1 (ENSPSIG00000005650) #22	DLGAP1 (ENSPSIG00000005548) #23	ENSPSIG00000001687	ZBTB14 (ENSPSIG00000005537) #26	EPB41L3 (ENSPSIG00000005287) #27	ENSPSIG00000005265	TMEM200C (ENSPSIG00000001683) #28	ARHGAP28 (ENSPSIG00000005238) #30	LAMA1 (ENSPSIG00000017271) #32	ENSPSIG00000001677
Testudinoidea	ANCESTRAL SPECIES		ENSGT00390000009615	ENSGT00390000016232.o	ENSGT00950000183074.A #7	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386.k #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.d ##21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a	ENSGT00390000007058	ENSGT00940000154639
Emydidae	ANCESTRAL SPECIES		ENSGT00390000009615	ENSGT00390000016232.o	ENSGT00950000183074.A #7	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386.k #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.d ##21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a	ENSGT00390000007058	ENSGT00940000154639
painted turtle	MODERN SPECIES	7	ASZ1 (ENSCPBG00000007263)	WNT2 (ENSCPBG00000007227)	ST7 (ENSCPBG00000007194)	CAPZA2 (ENSCPBG00000007179)	MET (ENSCPBG00000007168)	CAV1 (ENSCPBG00000007159)	CAV2 (ENSCPBG00000007156)	TES (ENSCPBG00000007139)	TFEC (ENSCPBG00000007125)	MDFIC (ENSCPBG00000007111)	FOXP2 (ENSCPBG00000007098)	PPP1R3A (ENSCPBG00000007087)	MYOM1 (ENSCPBG00000007000) #19	ENSCPBG00000006970 ##21	ENSCPBG00000006966 ##21	TGIF1 (ENSCPBG00000006961) #22	DLGAP1 (ENSCPBG00000006952) #23	AKAIN1 (ENSCPBG00000006937) #25	ZBTB14 (ENSCPBG00000006929) #26	EPB41L3 (ENSCPBG00000006846) #27	TMEM200C (ENSCPBG00000006823) #28	ARHGAP28 (ENSCPBG00000006810) #30	LAMA1 (ENSCPBG00000006787) #32	ENSCPBG00000006778	ATPSCKMT (ENSCPBG00000006764)	CCT5 (ENSCPBG00000006758)	SBK2 (ENSCPBG00000006752)	ENSCPBG00000006745	ENSCPBG00000006739	ENSCPBG00000006735	MARCHF6 (ENSCPBG00000006716)
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	108	ENSTMTG00000018045	RALY (ENSTMTG00000018027)	EIF2S2 (ENSTMTG00000018010)	ASIP (ENSTMTG00000017959)	AHCY (ENSTMTG00000017923)	ITCH (ENSTMTG00000017861)	DYNLRB1 (ENSTMTG00000017842)	MAP1LC3A (ENSTMTG00000017835)	PIGU (ENSTMTG00000017811)	ENSTMTG00000017804	TP53INP2 (ENSTMTG00000017776)	NCOA6 (ENSTMTG00000017760)	GGT7 (ENSTMTG00000017714)	RAB5IF (ENSTMTG00000017705)	MYL9 (ENSTMTG00000017696)	ENSTMTG00000017689 #22	ENSTMTG00000017678	ENSTMTG00000017656	AAR2 (ENSTMTG00000017641)	ENSTMTG00000017632	EPB41L1 (ENSTMTG00000017604)	SRSF6 (ENSTMTG00000017588)	L3MBTL1 (ENSTMTG00000016877)	SGK2 (ENSTMTG00000016783)	IFT52 (ENSTMTG00000016766)	MYBL2 (ENSTMTG00000016729)	PTPRT (ENSTMTG00000014895)	SLC32A1 (ENSTMTG00000014747)	ARHGAP40 (ENSTMTG00000014730)	ENSTMTG00000014722	ACTR5 (ENSTMTG00000014705)
Three-toed box turtle	MODERN SPECIES	24	USP14 (ENSTMTG00000020563)	THOC1 (ENSTMTG00000020553)	COLEC12 (ENSTMTG00000020542) #7	CLUL1 (ENSTMTG00000020534) #9	TYMS (ENSTMTG00000020516) #10	ENOSF1 (ENSTMTG00000020509) #11	YES1 (ENSTMTG00000020501) #12	ADCYAP1 (ENSTMTG00000020494) #13	METTL4 (ENSTMTG00000020489) #14	NDC80 (ENSTMTG00000020470) #15	SMCHD1 (ENSTMTG00000020008) #16	EMILIN2 (ENSTMTG00000019915) #17	LPIN2 (ENSTMTG00000019888) #18	MYOM1 (ENSTMTG00000019821) #19	ENSTMTG00000019802 ##21	TGIF1 (ENSTMTG00000019792) #22	DLGAP1 (ENSTMTG00000019718) #23	ENSTMTG00000019702	ZBTB14 (ENSTMTG00000019697) #26	EPB41L3 (ENSTMTG00000014178) #27	TMEM200C (ENSTMTG00000013816) #28	ENSTMTG00000013814	ENSTMTG00000013806 #30	LAMA1 (ENSTMTG00000011348) #32	LRRC30 (ENSTMTG00000011191) #33	PTPRM (ENSTMTG00000011085) #34	RAB12 (ENSTMTG00000011054) #35	MTCL1 (ENSTMTG00000011018) #36	NDUFV2 (ENSTMTG00000010988) #37	ANKRD12 (ENSTMTG00000010924)	TWSG1 (ENSTMTG00000010901)
Testudinidae	ANCESTRAL SPECIES	4	ENSGT00390000009615	ENSGT00390000016232.p	ENSGT00950000183074.A #7	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386.k #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.d ##21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT01050000245099	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020.c #34	ENSGT00940000155020.d #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a
Goode s thornscrub tortoise	MODERN SPECIES	11	ENSGEVG00005003959	COLEC12 (ENSGEVG00005003905) #7	CLUL1 (ENSGEVG00005003891) #9	TYMS (ENSGEVG00005003881) #10	ENOSF1 (ENSGEVG00005020337) #11	YES1 (ENSGEVG00005020327) #12	ADCYAP1 (ENSGEVG00005020320) #13	METTL4 (ENSGEVG00005020306) #14	NDC80 (ENSGEVG00005020277) #15	SMCHD1 (ENSGEVG00005020243) #16	EMILIN2 (ENSGEVG00005020109) #17	LPIN2 (ENSGEVG00005020051) #18	MYOM1 (ENSGEVG00005019599) #19	ENSGEVG00005019502 ##21	ENSGEVG00005019498 ##21	TGIF1 (ENSGEVG00005019490) #22	DLGAP1 (ENSGEVG00005019404) #23	ENSGEVG00005019379	ZBTB14 (ENSGEVG00005019369) #26	EPB41L3 (ENSGEVG00005019335) #27	TMEM200C (ENSGEVG00005019313) #28	ARHGAP28 (ENSGEVG00005019229) #30	LAMA1 (ENSGEVG00005019087) #32	LRRC30 (ENSGEVG00005019064) #33	ENSGEVG00005018990 #34	ENSGEVG00005018962 #34	RAB12 (ENSGEVG00005018901) #35	ENSGEVG00005018881 #36	NDUFV2 (ENSGEVG00005018841) #37	ANKRD12 (ENSGEVG00005018799)	TWSG1 (ENSGEVG00005018772)
Abingdon island giant tortoise	DUPLICATION
Abingdon island giant tortoise	MODERN SPECIES	1493													MYOM1 (ENSCABG00000011311) #19	ENSCABG00000011304 ##21	ENSCABG00000011303 ##21	TGIF1 (ENSCABG00000011302) #22	DLGAP1 (ENSCABG00000011294) #23
Abingdon island giant tortoise	MODERN SPECIES	2721								MAP1LC3A (ENSCABG00000001089)	PIGU (ENSCABG00000001045)	ENSCABG00000001032	TP53INP2 (ENSCABG00000001015)	NCOA6 (ENSCABG00000001002)	GGT7 (ENSCABG00000000994)	RAB5IF (ENSCABG00000000991)	MYL9 (ENSCABG00000000968)	ENSCABG00000000962 #22	ENSCABG00000000957	ENSCABG00000000950	AAR2 (ENSCABG00000000946)	EPB41L1 (ENSCABG00000000936)	SRSF6 (ENSCABG00000000928)	L3MBTL1 (ENSCABG00000000902)	SGK2 (ENSCABG00000000887)	IFT52 (ENSCABG00000000846)	MYBL2 (ENSCABG00000000835)	PTPRT (ENSCABG00000000308)
Archosauria	ANCESTRAL SPECIES		ENSGT00390000016232	ENSGT00950000183074.A #7	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.d ##21	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00940000166801	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a	ENSGT00390000007058
Australian saltwater crocodile	MODERN SPECIES		THOC1 (ENSCPRG00005012815)	COLEC12 (ENSCPRG00005012805) #7	CLUL1 (ENSCPRG00005012760) #9	TYMS (ENSCPRG00005012757) #10	ENOSF1 (ENSCPRG00005012735) #11	YES1 (ENSCPRG00005012732) #12	ADCYAP1 (ENSCPRG00005012688) #13	METTL4 (ENSCPRG00005012598) #14	NDC80 (ENSCPRG00005012579) #15	SMCHD1 (ENSCPRG00005011951) #16	EMILIN2 (ENSCPRG00005011842) #17	LPIN2 (ENSCPRG00005011838) #18	MYOM1 (ENSCPRG00005011737) #19	ENSCPRG00005011730 ##21	ENSCPRG00005011726 ##21	TGIF1 (ENSCPRG00005011653) #22	DLGAP1 (ENSCPRG00005011650) #23	ENSCPRG00005011531	ZBTB14 (ENSCPRG00005011530) #26	EPB41L3 (ENSCPRG00005010517) #27	TMEM200C (ENSCPRG00005010341) #28	ARHGAP28 (ENSCPRG00005010248) #30	LAMA1 (ENSCPRG00005009801) #32	ENSCPRG00005009745	PTPRM (ENSCPRG00005009709) #34	RAB12 (ENSCPRG00005009666) #35	MTCL1 (ENSCPRG00005009652) #36	NDUFV2 (ENSCPRG00005009576) #37	ANKRD12 (ENSCPRG00005009565)	TWSG1 (ENSCPRG00005009562)	RALBP1 (ENSCPRG00005009551)
Aves	ANCESTRAL SPECIES	9	ENSGT00390000016232	ENSGT00950000183074.A #7	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.d ##21	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00990000213402	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00940000166801	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a
African ostrich	MODERN SPECIES	328	COLEC12 (ENSSCUG00000005359) #7	CLUL1 (ENSSCUG00000005362) #9	TYMS (ENSSCUG00000005364) #10	ENOSF1 (ENSSCUG00000005365) #11	YES1 (ENSSCUG00000005366) #12	ADCYAP1 (ENSSCUG00000005367) #13	METTL4 (ENSSCUG00000005369) #14	NDC80 (ENSSCUG00000005371) #15	ENSSCUG00000005374	SMCHD1 (ENSSCUG00000005384) #16	EMILIN2 (ENSSCUG00000005455) #17	LPIN2 (ENSSCUG00000005459) #18	MYOM1 (ENSSCUG00000005467) #19	ENSSCUG00000005474 ##21	MYL12B (ENSSCUG00000005477) #21	TGIF1 (ENSSCUG00000005480) #22	ENSSCUG00000005485	DLGAP1 (ENSSCUG00000005488) #23	ENSSCUG00000005492	ENSSCUG00000005495	ZBTB14 (ENSSCUG00000005497) #26	EPB41L3 (ENSSCUG00000005503) #27	TMEM200C (ENSSCUG00000005530) #28	ENSSCUG00000005532	ARHGAP28 (ENSSCUG00000005535) #30	LAMA1 (ENSSCUG00000005573) #32	LRRC30 (ENSSCUG00000005611) #33	PTPRM (ENSSCUG00000005616) #34	ENSSCUG00000005620 #35	MTCL1 (ENSSCUG00000005621) #36	NDUFV2 (ENSSCUG00000005623) #37
Neognathae	ANCESTRAL SPECIES		ENSGT00390000009615	ENSGT00390000016232	ENSGT00950000183074.A #7	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.d ##21	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00990000213402	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00940000166801	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020.f #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a
Galloanserae	ANCESTRAL SPECIES		ENSGT00390000009615	ENSGT00390000016232	ENSGT00950000183074.A #7	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.d ##21	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00990000213402	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00940000166801	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000163916	ENSGT00940000164558.b	ENSGT00940000155020.f #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37
Anatidae	ANCESTRAL SPECIES	3	ENSGT00390000016232	ENSGT00950000183074.A #7	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.c.a #20	ENSGT00940000153607.d ##21	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT01050000245099	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00940000166801	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000164558.b	ENSGT00940000155020.f #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a
Pink-footed goose	MODERN SPECIES	13	ROCK1 (ENSABRG00000017265)	USP14 (ENSABRG00000018751)	THOC1 (ENSABRG00000019176)	COLEC12 (ENSABRG00000019303) #7	CLUL1 (ENSABRG00000019308) #9	TYMS (ENSABRG00000019312) #10	YES1 (ENSABRG00000019314) #12	ADCYAP1 (ENSABRG00000019320) #13	METTL4 (ENSABRG00000019330) #14	NDC80 (ENSABRG00000019332) #15	SMCHD1 (ENSABRG00000019351) #16	EMILIN2 (ENSABRG00000019602) #17	LPIN2 (ENSABRG00000019611) #18	MYOM1 (ENSABRG00000019644) #19	ENSABRG00000019670 #20	TGIF1 (ENSABRG00000019672) #22	DLGAP1 (ENSABRG00000019680) #23	AKAIN1 (ENSABRG00000019692) #25
Duck	MODERN SPECIES	10	USP14 (ENSAPLG00000000901)	THOC1 (ENSAPLG00000016149)	COLEC12 (ENSAPLG00000015987) #7	CLUL1 (ENSAPLG00000015948) #9	TYMS (ENSAPLG00000015661) #10	YES1 (ENSAPLG00000015182) #12	ADCYAP1 (ENSAPLG00000028139) #13	METTL4 (ENSAPLG00000015046) #14	NDC80 (ENSAPLG00000014505) #15	SMCHD1 (ENSAPLG00000013237) #16	EMILIN2 (ENSAPLG00000013210) #17	LPIN2 (ENSAPLG00000012547) #18	MYOM1 (ENSAPLG00000010648) #19	ENSAPLG00000010564 ##21	MYL12B (ENSAPLG00000022070) #21	TGIF1 (ENSAPLG00000010541) #22	DLGAP1 (ENSAPLG00000010212) #23	ENSAPLG00000022695	ZBTB14 (ENSAPLG00000011548) #26	EPB41L3 (ENSAPLG00000012505) #27	ENSAPLG00000025812	TMEM200C (ENSAPLG00000027090) #28	ARHGAP28 (ENSAPLG00000011853) #30	LAMA1 (ENSAPLG00000010343) #32	ENSAPLG00000011628	PTPRM (ENSAPLG00000008518) #34	RAB12 (ENSAPLG00000008252) #35	MTCL1 (ENSAPLG00000008150) #36	NDUFV2 (ENSAPLG00000008082) #37	ANKRD12 (ENSAPLG00000024129)	TWSG1 (ENSAPLG00000007766)
Phasianidae	ANCESTRAL SPECIES	1	ENSGT00390000009615	ENSGT00390000016232	ENSGT00950000183074.A #7	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.d ##21	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00990000213402	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00940000166801	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000163916	ENSGT00940000155020.f #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a
Phasianidae_b	ANCESTRAL SPECIES	1	ENSGT00390000009615	ENSGT00390000016232	ENSGT00950000183074.A #7	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.d ##21	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00940000166801	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000163916	ENSGT00940000155020.f #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a	ENSGT00390000007058
Turkey	MODERN SPECIES	22	ENSMGAG00000009171 #36	ENSMGAG00000009197 #35	ENSMGAG00000009204	ENSMGAG00000017771 #34	ENSMGAG00000009315 #34	ENSMGAG00000015823	ENSMGAG00000009369 #30	ENSMGAG00000021670 #32	ENSMGAG00000017963 #28	ENSMGAG00000017603	ENSMGAG00000021318 #27	ENSMGAG00000009404 #27	ENSMGAG00000015827 #26	ENSMGAG00000016772	ENSMGAG00000009471 #23	ENSMGAG00000017748 #22	ENSMGAG00000009505 ##21	MYOM1 (ENSMGAG00000009512) #19	ENSMGAG00000009626 #17	ENSMGAG00000009591 #18	SMCHD1 (ENSMGAG00000009642) #16	ENSMGAG00000009739 #14	ENSMGAG00000009700 #15	ENSMGAG00000008509	SOCS6 (ENSMGAG00000015440)	ENSMGAG00000008306	ENSMGAG00000021272	ENSMGAG00000008393	CBLN2 (ENSMGAG00000008302)	ENSMGAG00000008273	ENSMGAG00000015437
Chicken	MODERN SPECIES	11	USP14 (ENSGALG00010005033)	THOC1 (ENSGALG00010005025)	COLEC12 (ENSGALG00010003921) #7	CLUL1 (ENSGALG00010003873) #9	TYMS (ENSGALG00010003884) #10	YES1 (ENSGALG00010003874) #12	ADCYAP1 (ENSGALG00010004036) #13	METTL4 (ENSGALG00010001507) #14	NDC80 (ENSGALG00010001457) #15	SMCHD1 (ENSGALG00010001364) #16	EMILIN2 (ENSGALG00010001313) #17	LPIN2 (ENSGALG00010001279) #18	MYOM1 (ENSGALG00010001347) #19	MYL12A (ENSGALG00010001297) ##21	MYL12B (ENSGALG00010002352) #21	TGIF1 (ENSGALG00010001288) #22	DLGAP1 (ENSGALG00010001274) #23	AKAIN1 (ENSGALG00010001595) #25	ZBTB14 (ENSGALG00010001586) #26	EPB41L3 (ENSGALG00010001556) #27	ENSGALG00010001175	TMEM200C (ENSGALG00010001172) #28	ENSGALG00010001211	ARHGAP28 (ENSGALG00010002017) #30	LAMA1 (ENSGALG00010001967) #32	LRRC30 (ENSGALG00010002027)	PTPRM (ENSGALG00010001940) #34	RAB12 (ENSGALG00010001892) #35	MTCL1 (ENSGALG00010001880) #36	NDUFV2 (ENSGALG00010001849) #37	ANKRD12 (ENSGALG00010001845)
Japanese quail	MODERN SPECIES	11	THOC1 (ENSCJPG00005009262)	ENSCJPG00005009261	COLEC12 (ENSCJPG00005009259) #7	CLUL1 (ENSCJPG00005009258) #9	TYMS (ENSCJPG00005009257) #10	YES1 (ENSCJPG00005009256) #12	ADCYAP1 (ENSCJPG00005009254) #13	METTL4 (ENSCJPG00005009246) #14	NDC80 (ENSCJPG00005009037) #15	ENSCJPG00005009036 #16	EMILIN2 (ENSCJPG00005008950) #17	ENSCJPG00005008949 #18	ENSCJPG00005008948 #18	MYOM1 (ENSCJPG00005008718) #19	ENSCJPG00005008717 ##21	TGIF1 (ENSCJPG00005008716) #22	ENSCJPG00005008706	DLGAP1 (ENSCJPG00005008680) #23	ENSCJPG00005008659	ZBTB14 (ENSCJPG00005008602) #26	EPB41L3 (ENSCJPG00005008600) #27	ENSCJPG00005008599	TMEM200C (ENSCJPG00005008574) #28	ARHGAP28 (ENSCJPG00005008455) #30	LAMA1 (ENSCJPG00005008450) #32	ENSCJPG00005008449	PTPRM (ENSCJPG00005008402) #34	RAB12 (ENSCJPG00005008327) #35	MTCL1 (ENSCJPG00005008322) #36	NDUFV2 (ENSCJPG00005008319) #37	ANKRD12 (ENSCJPG00005008318)
Neognathae_b	ANCESTRAL SPECIES	3	ENSGT01030000234517.A	ENSGT00390000009615	ENSGT00390000016232	ENSGT00950000183074.A #7	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.d ##21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00940000166801	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020.f #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a	ENSGT00390000007058
Neognathae_c	ANCESTRAL SPECIES	1	ENSGT00960000189334	ENSGT00390000009615	ENSGT00390000016232	ENSGT00950000183074.A #7	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.d ##21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020.e.a #34	ENSGT00940000155020.f #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a	ENSGT00390000007058
Golden eagle	MODERN SPECIES	20	CLUL1 (ENSACCG00020007379) #9	TYMS (ENSACCG00020007407) #10	ENSACCG00020007423	YES1 (ENSACCG00020007451) #12	ADCYAP1 (ENSACCG00020007471) #13	ENSACCG00020007486	ENSACCG00020007495	METTL4 (ENSACCG00020007504) #14	NDC80 (ENSACCG00020007587) #15	SMCHD1 (ENSACCG00020007610) #16	EMILIN2 (ENSACCG00020007675) #17	LPIN2 (ENSACCG00020007735) #18	ENSACCG00020007754 ##21	MYOM1 (ENSACCG00020007787) #19	ENSACCG00020007822 ##21	TGIF1 (ENSACCG00020007830) #22	DLGAP1 (ENSACCG00020007855) #23	AKAIN1 (ENSACCG00020007871) #25	ZBTB14 (ENSACCG00020007885) #26	EPB41L3 (ENSACCG00020008915) #27	TMEM200C (ENSACCG00020009922) #28	ARHGAP28 (ENSACCG00020009953) #30	LAMA1 (ENSACCG00020010001) #32	LRRC30 (ENSACCG00020010026) #33	PTPRM (ENSACCG00020010146) #34	RAB12 (ENSACCG00020010245) #35	MTCL1 (ENSACCG00020010301) #36	TWSG1 (ENSACCG00020010347)	ANKRD12 (ENSACCG00020010370)	NDUFV2 (ENSACCG00020010393) #37	RALBP1 (ENSACCG00020010402)
Kakapo	MODERN SPECIES		ENSSHBG00005009390	USP14 (ENSSHBG00005009402)	THOC1 (ENSSHBG00005009432)	COLEC12 (ENSSHBG00005009472) #7	CLUL1 (ENSSHBG00005009500) #9	TYMS (ENSSHBG00005009541) #10	YES1 (ENSSHBG00005009549) #12	ADCYAP1 (ENSSHBG00005009604) #13	METTL4 (ENSSHBG00005009622) #14	NDC80 (ENSSHBG00005009637) #15	SMCHD1 (ENSSHBG00005009701) #16	EMILIN2 (ENSSHBG00005009847) #17	LPIN2 (ENSSHBG00005009886) #18	MYOM1 (ENSSHBG00005009940) #19	ENSSHBG00005010016 ##21	TGIF1 (ENSSHBG00005010058) #22	DLGAP1 (ENSSHBG00005010073) #23	ENSSHBG00005010098	ENSSHBG00005010107	ZBTB14 (ENSSHBG00005010118) #26	EPB41L3 (ENSSHBG00005010140) #27	TMEM200C (ENSSHBG00005010241) #28	ARHGAP28 (ENSSHBG00005010310) #30	LAMA1 (ENSSHBG00005000448) #32	LRRC30 (ENSSHBG00005000506) #33	ENSSHBG00005000569 #34	FBXO15 (ENSSHBG00005000593)	TIMM21 (ENSSHBG00005000597)	CYB5A (ENSSHBG00005002134)	C18orf63 (ENSSHBG00005002153)	DIPK1C (ENSSHBG00005002169)
Passeriformes	ANCESTRAL SPECIES		ENSGT01030000234517.A	ENSGT00390000009615	ENSGT00390000016232	ENSGT00950000183074.A #7	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.d ##21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00940000166801	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020.f #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a	ENSGT00390000007058
Great tit	MODERN SPECIES	11	ROCK1 (ENSPMJG00000014679)	USP14 (ENSPMJG00000014678)	THOC1 (ENSPMJG00000014677)	COLEC12 (ENSPMJG00000014676) #7	CLUL1 (ENSPMJG00000014675) #9	TYMS (ENSPMJG00000014674) #10	YES1 (ENSPMJG00000014673) #12	ADCYAP1 (ENSPMJG00000014671) #13	METTL4 (ENSPMJG00000014667) #14	ENSPMJG00000014666 #15	ENSPMJG00000014665 #16	EMILIN2 (ENSPMJG00000014664) #17	LPIN2 (ENSPMJG00000014663) #18	MYOM1 (ENSPMJG00000014662) #19	ENSPMJG00000014661 ##21	TGIF1 (ENSPMJG00000014660) #22	DLGAP1 (ENSPMJG00000014657) #23	AKAIN1 (ENSPMJG00000014655) #25	ZBTB14 (ENSPMJG00000014654) #26	EPB41L3 (ENSPMJG00000014653) #27	ENSPMJG00000014651	TMEM200C (ENSPMJG00000014650) #28	ARHGAP28 (ENSPMJG00000014648) #30	LAMA1 (ENSPMJG00000014647) #32	LRRC30 (ENSPMJG00000014646) #33	PTPRM (ENSPMJG00000014635) #34	RAB12 (ENSPMJG00000014630) #35	MTCL1 (ENSPMJG00000014629) #36	NDUFV2 (ENSPMJG00000014627) #37	ANKRD12 (ENSPMJG00000014626)	TWSG1 (ENSPMJG00000014623)
Passeriformes_d	ANCESTRAL SPECIES		ENSGT01030000234517.A	ENSGT00390000009615	ENSGT00390000016232	ENSGT00950000183074.A #7	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.d ##21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00940000166801	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020.f #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a	ENSGT00390000007058
Flycatcher	DUPLICATION
Flycatcher	MODERN SPECIES	12	ENSFALG00000006583	ENSFALG00000012549	ENSFALG00000012554	ENSFALG00000025915	ENSFALG00000012559	ENSFALG00000012563	ENSFALG00000012569	ENSFALG00000012591	ENSFALG00000012620	PIGU (ENSFALG00000012629)	ENSFALG00000025882	ENSFALG00000012647	GGT7 (ENSFALG00000012666)	ENSFALG00000012694	ENSFALG00000025016	ENSFALG00000028854 #22	ENSFALG00000024721	ENSFALG00000012718	ENSFALG00000012739	EPB41L1 (ENSFALG00000012755)	ENSFALG00000025812	ENSFALG00000012779	ENSFALG00000027527	AHCY (ENSFALG00000010589)	ASIP (ENSFALG00000025930)	EIF2S2 (ENSFALG00000010608)	ENSFALG00000026368	CHMP4B (ENSFALG00000005962)	ZNF341 (ENSFALG00000005944)	PXMP4 (ENSFALG00000005928)	ENSFALG00000005914
Flycatcher	MODERN SPECIES	11	ROCK1 (ENSFALG00000006185)	USP14 (ENSFALG00000028057)	THOC1 (ENSFALG00000006194)	COLEC12 (ENSFALG00000006224) #7	CLUL1 (ENSFALG00000006234) #9	TYMS (ENSFALG00000006240) #10	YES1 (ENSFALG00000023811) #12	ADCYAP1 (ENSFALG00000028660) #13	METTL4 (ENSFALG00000006257) #14	ENSFALG00000006264 #15	SMCHD1 (ENSFALG00000006275) #16	EMILIN2 (ENSFALG00000006279) #17	LPIN2 (ENSFALG00000006288) #18	MYOM1 (ENSFALG00000006302) #19	ENSFALG00000028607 ##21	TGIF1 (ENSFALG00000025737) #22	DLGAP1 (ENSFALG00000006315) #23	ENSFALG00000006321	ZBTB14 (ENSFALG00000029022) #26	EPB41L3 (ENSFALG00000006324) #27	TMEM200C (ENSFALG00000014191) #28	ARHGAP28 (ENSFALG00000006329) #30	LAMA1 (ENSFALG00000006330) #32	LRRC30 (ENSFALG00000014193) #33	PTPRM (ENSFALG00000006343) #34	RAB12 (ENSFALG00000023640) #35	MTCL1 (ENSFALG00000006370) #36	NDUFV2 (ENSFALG00000006374) #37	ANKRD12 (ENSFALG00000006379)	TWSG1 (ENSFALG00000027520)	ENSFALG00000028225
Passeriformes_g	ANCESTRAL SPECIES	3	ENSGT00390000009615	ENSGT00390000016232	ENSGT00950000183074.A #7	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.d ##21	ENSGT00940000153607.c.b #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00940000166801	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020.f #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a	ENSGT00390000007058
Passeroidea	ANCESTRAL SPECIES	2	ENSGT01030000234517.A	ENSGT00390000009615	ENSGT00390000016232	ENSGT00950000183074.A #7	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.d ##21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00560000078638 #25	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00940000166801	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020.f #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a	ENSGT00390000007058
Common canary	MODERN SPECIES		USP14 (ENSSCAG00000010244)	THOC1 (ENSSCAG00000010017)	COLEC12 (ENSSCAG00000009939) #7	CLUL1 (ENSSCAG00000009935) #9	TYMS (ENSSCAG00000009929) #10	YES1 (ENSSCAG00000009919) #12	ADCYAP1 (ENSSCAG00000009910) #13	METTL4 (ENSSCAG00000009903) #14	NDC80 (ENSSCAG00000009901) #15	SMCHD1 (ENSSCAG00000009893) #16	EMILIN2 (ENSSCAG00000009886) #17	LPIN2 (ENSSCAG00000009880) #18	MYOM1 (ENSSCAG00000009651) #19	ENSSCAG00000009601 ##21	ENSSCAG00000009591 ##21	TGIF1 (ENSSCAG00000009584) #22	DLGAP1 (ENSSCAG00000009525) #23	ENSSCAG00000009479	ZBTB14 (ENSSCAG00000009472) #26	EPB41L3 (ENSSCAG00000009458) #27	TMEM200C (ENSSCAG00000009443) #28	ARHGAP28 (ENSSCAG00000009422) #30	ENSSCAG00000009417 #32	ENSSCAG00000009395 #32	LRRC30 (ENSSCAG00000009384) #33	PTPRM (ENSSCAG00000009314) #34	RAB12 (ENSSCAG00000009254) #35	MTCL1 (ENSSCAG00000009233) #36	NDUFV2 (ENSSCAG00000009198) #37	ANKRD12 (ENSSCAG00000009189)	TWSG1 (ENSSCAG00000009178)
Zebra finch	DUPLICATION
Zebra finch	MODERN SPECIES	13	RBM39 (ENSTGUG00000003048)	ENSTGUG00000003078	PHF20 (ENSTGUG00000003083)	NDRG3 (ENSTGUG00000003092)	RALGAPB (ENSTGUG00000003151)	CHD6 (ENSTGUG00000003179)	RBL1 (ENSTGUG00000003231)	SAMHD1 (ENSTGUG00000003280)	ENSTGUG00000003300	PIGU (ENSTGUG00000003310)	TP53INP2 (ENSTGUG00000003333)	NCOA6 (ENSTGUG00000003336)	GGT7 (ENSTGUG00000003352)	RAB5IF (ENSTGUG00000003394)	MYL9 (ENSTGUG00000019646)	ENSTGUG00000027480 #22	DLGAP4 (ENSTGUG00000003402)	AAR2 (ENSTGUG00000025845)	EPB41L1 (ENSTGUG00000003444)	SRSF6 (ENSTGUG00000003455)	L3MBTL1 (ENSTGUG00000003474)	ENSTGUG00000003507	ITCH (ENSTGUG00000003516)	DYNLRB1 (ENSTGUG00000026456)	MAP1LC3A (ENSTGUG00000027468)	CEP250 (ENSTGUG00000003580)	ENSTGUG00000026912	GDF5 (ENSTGUG00000003594)	ENSTGUG00000022461	UQCC1 (ENSTGUG00000003601)	EIF6 (ENSTGUG00000024120)
Zebra finch	MODERN SPECIES	12	ROCK1 (ENSTGUG00000010253)	USP14 (ENSTGUG00000010223)	THOC1 (ENSTGUG00000010204)	COLEC12 (ENSTGUG00000010195) #7	CLUL1 (ENSTGUG00000010187) #9	TYMS (ENSTGUG00000010173) #10	YES1 (ENSTGUG00000010159) #12	ADCYAP1 (ENSTGUG00000021936) #13	METTL4 (ENSTGUG00000010144) #14	NDC80 (ENSTGUG00000010126) #15	SMCHD1 (ENSTGUG00000010092) #16	EMILIN2 (ENSTGUG00000019550) #17	LPIN2 (ENSTGUG00000010074) #18	MYOM1 (ENSTGUG00000010031) #19	ENSTGUG00000010026 ##21	TGIF1 (ENSTGUG00000021525) #22	DLGAP1 (ENSTGUG00000010015) #23	AKAIN1 (ENSTGUG00000026309) #25	ZBTB14 (ENSTGUG00000026034) #26	EPB41L3 (ENSTGUG00000009980) #27	ENSTGUG00000025068	TMEM200C (ENSTGUG00000025257) #28	ARHGAP28 (ENSTGUG00000009964) #30	ENSTGUG00000024157 #32	PTPRM (ENSTGUG00000009897) #34	RAB12 (ENSTGUG00000009889) #35	MTCL1 (ENSTGUG00000009883) #36	NDUFV2 (ENSTGUG00000009858) #37	ANKRD12 (ENSTGUG00000009842)	TWSG1 (ENSTGUG00000009833)	RALBP1 (ENSTGUG00000009818)
Medium ground finch	DUPLICATION
Medium ground finch	MODERN SPECIES	184	RBM39 (ENSGFOG00000008480)	ENSGFOG00000008453	PHF20 (ENSGFOG00000008410)	NDRG3 (ENSGFOG00000008383)	ENSGFOG00000008372	RALGAPB (ENSGFOG00000008317)	CHD6 (ENSGFOG00000008008)	RBL1 (ENSGFOG00000007635)	SAMHD1 (ENSGFOG00000006379)	PIGU (ENSGFOG00000006317)	ENSGFOG00000006311	NCOA6 (ENSGFOG00000006304)	GGT7 (ENSGFOG00000006289)	RAB5IF (ENSGFOG00000006281)	MYL9 (ENSGFOG00000006277)	ENSGFOG00000006275 #22	ENSGFOG00000006268	ENSGFOG00000006261	ENSGFOG00000006253	EPB41L1 (ENSGFOG00000006224)	SRSF6 (ENSGFOG00000006215)	L3MBTL1 (ENSGFOG00000006197)	ENSGFOG00000006187
Medium ground finch	MODERN SPECIES	8	ROCK1 (ENSGFOG00000004833)	USP14 (ENSGFOG00000004818)	THOC1 (ENSGFOG00000004582)	COLEC12 (ENSGFOG00000004526) #7	CLUL1 (ENSGFOG00000004502) #9	TYMS (ENSGFOG00000004489) #10	YES1 (ENSGFOG00000004474) #12	ADCYAP1 (ENSGFOG00000004443) #13	METTL4 (ENSGFOG00000004006) #14	NDC80 (ENSGFOG00000003969) #15	SMCHD1 (ENSGFOG00000003902) #16	EMILIN2 (ENSGFOG00000003888) #17	LPIN2 (ENSGFOG00000003847) #18	MYOM1 (ENSGFOG00000003776) #19	MYL12B (ENSGFOG00000003744) #21	TGIF1 (ENSGFOG00000003724) #22	DLGAP1 (ENSGFOG00000003709) #23
Lepidosauria	ANCESTRAL SPECIES	2	ENSGT00390000009615	ENSGT00390000016232	ENSGT00950000183074.A #7	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.d ##21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT01050000245099	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a	ENSGT00390000007058	ENSGT00940000154639
Episquamata	ANCESTRAL SPECIES	1	ENSGT00390000009615	ENSGT00390000016232	ENSGT00950000183074.A #7	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.d ##21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT01050000245099	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a	ENSGT00390000007058	ENSGT00940000154639
Toxicofera	ANCESTRAL SPECIES	8	ENSGT00390000009615	ENSGT00390000016232	ENSGT00950000183074.A #7	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.d ##21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT01050000245099	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a	ENSGT00390000007058	ENSGT00940000154639
Lizard	MODERN SPECIES	3	FAM210A (ENSACAG00000013169)	ENSACAG00000034999	LDLRAD4 (ENSACAG00000013183)	CEP192 (ENSACAG00000013197)	SEH1L (ENSACAG00000013294)	PTPN2 (ENSACAG00000013333)	PSMG2 (ENSACAG00000013408)	ENSACAG00000037756	ENSACAG00000013429	ENSACAG00000043353	ENSACAG00000038763	ENSACAG00000008882 #16	EMILIN2 (ENSACAG00000009078) #17	LPIN2 (ENSACAG00000009151) #18	MYOM1 (ENSACAG00000009246) #19	TGIF1 (ENSACAG00000044052) #22	ENSACAG00000009571 ##21	DLGAP1 (ENSACAG00000009590) #23	ENSACAG00000037635	ENSACAG00000041171	ENSACAG00000042774	ZBTB14 (ENSACAG00000009653) #26	EPB41L3 (ENSACAG00000009659) #27	ENSACAG00000039557	ENSACAG00000036653	TMEM200C (ENSACAG00000009890) #28	ENSACAG00000010061	ENSACAG00000027747	ENSACAG00000041056	ENSACAG00000010062	ENSACAG00000010074
Elapidae	ANCESTRAL SPECIES	8	ENSGT01030000234517.A.i	ENSGT00390000009615	ENSGT00390000016232	ENSGT00950000183074.A #7	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.m.a ##16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.d ##21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT01050000245099	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a.e	ENSGT00390000007058	ENSGT00940000154639
Indian cobra	DUPLICATION
Indian cobra	MODERN SPECIES	2	ENSNNAG00000001010	ENSNNAG00000000994	EIF2S2 (ENSNNAG00000000981)	ASIP (ENSNNAG00000000968)	AHCY (ENSNNAG00000000953)	ITCH (ENSNNAG00000000909)	DYNLRB1 (ENSNNAG00000000888)	MAP1LC3A (ENSNNAG00000000871)	PIGU (ENSNNAG00000000795)	ENSNNAG00000000782	TP53INP2 (ENSNNAG00000000774)	NCOA6 (ENSNNAG00000000742)	GGT7 (ENSNNAG00000002814)	RAB5IF (ENSNNAG00000002806)	ENSNNAG00000002801	ENSNNAG00000002796 #22	ENSNNAG00000002784	ENSNNAG00000002776	ENSNNAG00000002771	AAR2 (ENSNNAG00000002767)	EPB41L1 (ENSNNAG00000002751)	SRSF6 (ENSNNAG00000002740)	L3MBTL1 (ENSNNAG00000002690)	SGK2 (ENSNNAG00000002672)	IFT52 (ENSNNAG00000002651)	MYBL2 (ENSNNAG00000002639)	ENSNNAG00000002594	ENSNNAG00000002582	SLC32A1 (ENSNNAG00000002576)	ARHGAP40 (ENSNNAG00000002554)	ENSNNAG00000002539
Indian cobra	MODERN SPECIES	2	ENSNNAG00000017389	ROCK1 (ENSNNAG00000017342)	USP14 (ENSNNAG00000017327)	THOC1 (ENSNNAG00000017309)	COLEC12 (ENSNNAG00000017287) #7	TYMS (ENSNNAG00000017269) #10	ENOSF1 (ENSNNAG00000017263) #11	YES1 (ENSNNAG00000017256) #12	ADCYAP1 (ENSNNAG00000017250) #13	METTL4 (ENSNNAG00000017245) #14	NDC80 (ENSNNAG00000017213) #15	ENSNNAG00000016346 ##16	LPIN2 (ENSNNAG00000016225) #18	MYOM1 (ENSNNAG00000016151) #19	EMILIN2 (ENSNNAG00000016113) #17	TGIF1 (ENSNNAG00000016102) #22	DLGAP1 (ENSNNAG00000016020) #23	ENSNNAG00000016002	ZBTB14 (ENSNNAG00000015997) #26	EPB41L3 (ENSNNAG00000015972) #27	TMEM200C (ENSNNAG00000015955) #28	ARHGAP28 (ENSNNAG00000015909) #30	LAMA1 (ENSNNAG00000015780) #32	LRRC30 (ENSNNAG00000015764) #33	PTPRM (ENSNNAG00000015463) #34	RAB12 (ENSNNAG00000015414) #35	MTCL1 (ENSNNAG00000015366) #36	NDUFV2 (ENSNNAG00000015337) #37	ANKRD12 (ENSNNAG00000015307)	TWSG1 (ENSNNAG00000015277)	RALBP1 (ENSNNAG00000015264)
Elapidae_a	ANCESTRAL SPECIES	14	ENSGT01030000234517.A.i	ENSGT00390000009615	ENSGT00390000016232	ENSGT00950000183074.A #7	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.m.a ##16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.d ##21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT01050000245099	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a.e	ENSGT00390000007058	ENSGT00940000154639
Blue-lipped sea krait	MODERN SPECIES	320													ENSLLTG00000014554 #18	MYOM1 (ENSLLTG00000014562) #19	ENSLLTG00000014576 ##21	TGIF1 (ENSLLTG00000014579) #22	DLGAP1 (ENSLLTG00000014580) #23
Acanthophiinae	ANCESTRAL SPECIES	16	ENSGT01030000234517.A.i	ENSGT00390000009615	ENSGT00390000016232	ENSGT00950000183074.A #7	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.m.a ##16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.d ##21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT01050000245099	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a.e	ENSGT00390000007058	ENSGT00940000154639
Eastern brown snake	DUPLICATION
Eastern brown snake	MODERN SPECIES	8	ENSPTXG00000007812	ENSPTXG00000007811	EIF2S2 (ENSPTXG00000007809)	ASIP (ENSPTXG00000007806)	AHCY (ENSPTXG00000007803)	ITCH (ENSPTXG00000007800)	DYNLRB1 (ENSPTXG00000007798)	MAP1LC3A (ENSPTXG00000007795)	PIGU (ENSPTXG00000007794)	ENSPTXG00000007791	TP53INP2 (ENSPTXG00000007790)	NCOA6 (ENSPTXG00000007788)	GGT7 (ENSPTXG00000007783)	RAB5IF (ENSPTXG00000007780)	ENSPTXG00000007779	ENSPTXG00000007777 #22	ENSPTXG00000007775	ENSPTXG00000007773	AAR2 (ENSPTXG00000007770)	EPB41L1 (ENSPTXG00000007765)	SRSF6 (ENSPTXG00000007762)	L3MBTL1 (ENSPTXG00000007761)	SGK2 (ENSPTXG00000007760)	IFT52 (ENSPTXG00000007726)	MYBL2 (ENSPTXG00000007725)	PTPRT (ENSPTXG00000007607)	SLC32A1 (ENSPTXG00000007605)	ARHGAP40 (ENSPTXG00000007603)	ENSPTXG00000007602	ACTR5 (ENSPTXG00000007600)	PPP1R16B (ENSPTXG00000007598)
Eastern brown snake	MODERN SPECIES	11	THOC1 (ENSPTXG00000007030)	COLEC12 (ENSPTXG00000007031) #7	TYMS (ENSPTXG00000007032) #10	ENOSF1 (ENSPTXG00000007033) #11	YES1 (ENSPTXG00000007034) #12	ADCYAP1 (ENSPTXG00000007035) #13	ENSPTXG00000007036	METTL4 (ENSPTXG00000007037) #14	NDC80 (ENSPTXG00000007038) #15	SMCHD1 (ENSPTXG00000007039) ##16	ENSPTXG00000007040	EMILIN2 (ENSPTXG00000007041) #17	LPIN2 (ENSPTXG00000007245) #18	MYOM1 (ENSPTXG00000007247) #19	ENSPTXG00000007831 ##21	TGIF1 (ENSPTXG00000007832) #22	DLGAP1 (ENSPTXG00000007834) #23	ENSPTXG00000007858	ZBTB14 (ENSPTXG00000007859) #26	EPB41L3 (ENSPTXG00000007862) #27	TMEM200C (ENSPTXG00000007865) #28	ARHGAP28 (ENSPTXG00000007868) #30	LAMA1 (ENSPTXG00000008476) #32	LRRC30 (ENSPTXG00000008477) #33	PTPRM (ENSPTXG00000008487) #34	RAB12 (ENSPTXG00000016984) #35	MTCL1 (ENSPTXG00000016987) #36	NDUFV2 (ENSPTXG00000016989) #37	ANKRD12 (ENSPTXG00000016991)	TWSG1 (ENSPTXG00000016993)	RALBP1 (ENSPTXG00000016997)
Mainland tiger snake	DUPLICATION
Mainland tiger snake	MODERN SPECIES	159	ENSNSUG00000006800	ENSNSUG00000006799	EIF2S2 (ENSNSUG00000006794)	ASIP (ENSNSUG00000006791)	AHCY (ENSNSUG00000006790)	ITCH (ENSNSUG00000004770)	DYNLRB1 (ENSNSUG00000004757)	MAP1LC3A (ENSNSUG00000004753)	PIGU (ENSNSUG00000004739)	ENSNSUG00000004738	TP53INP2 (ENSNSUG00000004733)	NCOA6 (ENSNSUG00000004718)	GGT7 (ENSNSUG00000004708)	RAB5IF (ENSNSUG00000004702)	ENSNSUG00000004699	ENSNSUG00000004694 #22	ENSNSUG00000004693	ENSNSUG00000004692
Mainland tiger snake	MODERN SPECIES	40												EMILIN2 (ENSNSUG00000008072) #17	LPIN2 (ENSNSUG00000008141) #18	MYOM1 (ENSNSUG00000008142) #19	ENSNSUG00000008143 ##21	TGIF1 (ENSNSUG00000008144) #22	DLGAP1 (ENSNSUG00000008145) #23	ENSNSUG00000008151	ZBTB14 (ENSNSUG00000008152) #26	EPB41L3 (ENSNSUG00000008154) #27	TMEM200C (ENSNSUG00000008159) #28	ENSNSUG00000008162	ENSNSUG00000008163 #30	LAMA1 (ENSNSUG00000008176) #32	ENSNSUG00000008177	PTPRM (ENSNSUG00000008179) #34	RAB12 (ENSNSUG00000008180) #35	MTCL1 (ENSNSUG00000008181) #36	NDUFV2 (ENSNSUG00000008182) #37	ENSNSUG00000008183	ENSNSUG00000008184
Laterata	ANCESTRAL SPECIES	5	ENSGT00390000009615	ENSGT00390000016232	ENSGT00950000183074.A #7	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000018386 #15	ENSGT00390000006950.n #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607.d ##21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT01050000245099	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000161019 #33	ENSGT00940000163916	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00390000017580 #37	ENSGT00940000154742.a.g	ENSGT00940000154742.a.h
Argentine black and white tegu	MODERN SPECIES	4	USP14 (ENSSMRG00000016589)	THOC1 (ENSSMRG00000016593)	COLEC12 (ENSSMRG00000016596) #7	CLUL1 (ENSSMRG00000016597) #9	TYMS (ENSSMRG00000016598) #10	ENOSF1 (ENSSMRG00000016599) #11	YES1 (ENSSMRG00000016600) #12	ADCYAP1 (ENSSMRG00000016604) #13	METTL4 (ENSSMRG00000016614) #14	ENSSMRG00000016615 #15	SMCHD1 (ENSSMRG00000016617) #16	EMILIN2 (ENSSMRG00000016621) #17	LPIN2 (ENSSMRG00000016622) #18	MYOM1 (ENSSMRG00000016623) #19	ENSSMRG00000016626 ##21	TGIF1 (ENSSMRG00000016627) #22	ENSSMRG00000016628	DLGAP1 (ENSSMRG00000016629) #23	ENSSMRG00000016631	ZBTB14 (ENSSMRG00000016632) #26	EPB41L3 (ENSSMRG00000016633) #27	TMEM200C (ENSSMRG00000016635) #28	ARHGAP28 (ENSSMRG00000016636) #30	LAMA1 (ENSSMRG00000016637) #32	ENSSMRG00000017057	PTPRM (ENSSMRG00000017110) #34	ENSSMRG00000017150	RAB12 (ENSSMRG00000000028) #35	MTCL1 (ENSSMRG00000000059) #36	NDUFV2 (ENSSMRG00000000263) #37	ENSSMRG00000000290
Common wall lizard	DUPLICATION
Common wall lizard	MODERN SPECIES	14	EIF2S2 (ENSPMRG00000020795)	ASIP (ENSPMRG00000020805)	ENSPMRG00000020811	AHCY (ENSPMRG00000020815)	ITCH (ENSPMRG00000020827)	DYNLRB1 (ENSPMRG00000020841)	PIGU (ENSPMRG00000020849)	MAP1LC3A (ENSPMRG00000020853)	ENSPMRG00000020858	TP53INP2 (ENSPMRG00000020864)	NCOA6 (ENSPMRG00000020876)	GGT7 (ENSPMRG00000020902)	ENSPMRG00000020913	RAB5IF (ENSPMRG00000020921)	MYL9 (ENSPMRG00000020929)	ENSPMRG00000020934 #22	DLGAP4 (ENSPMRG00000020941)	ENSPMRG00000020955	AAR2 (ENSPMRG00000020958)	ENSPMRG00000020966	EPB41L1 (ENSPMRG00000020983)	ENSPMRG00000021067	L3MBTL1 (ENSPMRG00000021072)	SGK2 (ENSPMRG00000021090)	IFT52 (ENSPMRG00000021100)	MYBL2 (ENSPMRG00000021111)	ENSPMRG00000021127	ENSPMRG00000021133	ENSPMRG00000021138	PTPRT (ENSPMRG00000021164)	ENSPMRG00000021294
Common wall lizard	MODERN SPECIES	15	THOC1 (ENSPMRG00000005726)	CLUL1 (ENSPMRG00000005750) #9	TYMS (ENSPMRG00000005762) #10	ENOSF1 (ENSPMRG00000005780) #11	YES1 (ENSPMRG00000005808) #12	ADCYAP1 (ENSPMRG00000005832) #13	METTL4 (ENSPMRG00000005852) #14	NDC80 (ENSPMRG00000005868) #15	SMCHD1 (ENSPMRG00000005912) #16	EMILIN2 (ENSPMRG00000006032) #17	LPIN2 (ENSPMRG00000006055) #18	ENSPMRG00000006094	MYOM1 (ENSPMRG00000006111) #19	ENSPMRG00000006137 ##21	ENSPMRG00000006141	TGIF1 (ENSPMRG00000006145) #22	DLGAP1 (ENSPMRG00000006151) #23	ENSPMRG00000006183	ZBTB14 (ENSPMRG00000006191) #26	EPB41L3 (ENSPMRG00000006201) #27	TMEM200C (ENSPMRG00000006235) #28	ENSPMRG00000006240	ENSPMRG00000006246 #30	ENSPMRG00000006249	ENSPMRG00000006253 #30	LAMA1 (ENSPMRG00000006273) #32	LRRC30 (ENSPMRG00000006332) #33	ENSPMRG00000006335	PTPRM (ENSPMRG00000006368) #34	ENSPMRG00000006553	RAB12 (ENSPMRG00000006557) #35
tuatara	DUPLICATION
tuatara	MODERN SPECIES	618						AHCY (ENSSPUG00000008392)	ITCH (ENSSPUG00000008370)	DYNLRB1 (ENSSPUG00000008358)	MAP1LC3A (ENSSPUG00000008352)	PIGU (ENSSPUG00000008335)	TP53INP2 (ENSSPUG00000008328)	NCOA6 (ENSSPUG00000008311)	GGT7 (ENSSPUG00000008256)	RAB5IF (ENSSPUG00000008245)	MYL9 (ENSSPUG00000008238)	ENSSPUG00000008221 #22	DLGAP4 (ENSSPUG00000008215)	AAR2 (ENSSPUG00000008171)
tuatara	DUPLICATION
tuatara	MODERN SPECIES	1783							METTL4 (ENSSPUG00000009271) #14	NDC80 (ENSSPUG00000009282) #15	ENSSPUG00000009317	SMCHD1 (ENSSPUG00000009345) #16	EMILIN2 (ENSSPUG00000009472) #17	LPIN2 (ENSSPUG00000009736) #18	MYOM1 (ENSSPUG00000009777) #19	ENSSPUG00000009881 ##21	ENSSPUG00000009914 ##21	ENSSPUG00000009921 #22	DLGAP1 (ENSSPUG00000009962) #23	AKAIN1 (ENSSPUG00000010070) #25	ENSSPUG00000010077	ZBTB14 (ENSSPUG00000010087) #26	EPB41L3 (ENSSPUG00000010118) #27
tuatara	MODERN SPECIES	1953									DCLK2 (ENSSPUG00000014082)	LRBA (ENSSPUG00000014182)	MAB21L2 (ENSSPUG00000014351)	RPS3A (ENSSPUG00000014357)	SH3D19 (ENSSPUG00000014397)	FHIP1A (ENSSPUG00000014419)	GATB (ENSSPUG00000014453)	ENSSPUG00000014506 #22	FBXW7 (ENSSPUG00000014517)	ENSSPUG00000014535	TMEM154 (ENSSPUG00000014538)	ARFIP1 (ENSSPUG00000014560)	FHDC1 (ENSSPUG00000014609)	TRIM2 (ENSSPUG00000014628)	MND1 (ENSSPUG00000014651)	TMEM131L (ENSSPUG00000014782)	ENSSPUG00000014856	ENSSPUG00000014870	RNF175 (ENSSPUG00000014894)	SFRP2 (ENSSPUG00000014918)	ENSSPUG00000014941
Anura	ANCESTRAL SPECIES	1	ENSGT01030000234517.A	ENSGT00390000009615	ENSGT00390000016232	ENSGT00950000183074.A #7	ENSGT00530000063668.A #9	ENSGT00390000014786 #10	ENSGT00390000014290 #11	ENSGT00940000154920 #12	ENSGT00950000183154.b.a.b #13	ENSGT00390000016237 #14	ENSGT00390000006950 #16	ENSGT01030000234633.B.a #17	ENSGT00940000156313 #18	ENSGT00940000154982 #19	ENSGT00940000153607 #21	ENSGT00940000155230 #22	ENSGT00940000156220 #23	ENSGT00940000158052.a #26	ENSGT00940000157047 #27	ENSGT00530000063698.a.b #28	ENSGT00940000158929 #30	ENSGT00940000157124 #32	ENSGT00940000163916	ENSGT00940000155020 #34	ENSGT00940000159325 #35	ENSGT00950000182982.A #36	ENSGT00940000166845	ENSGT00390000017580 #37	ENSGT00940000154742.a	ENSGT00390000007058	ENSGT00940000154639
Frog	MODERN SPECIES	6	usp14 (ENSXETG00000003152)	ENSXETG00000041690	thoc1 (ENSXETG00000003155)	colec12 (ENSXETG00000003154) #7	clul1 (ENSXETG00000036167) #9	tyms (ENSXETG00000003156) #10	enosf1 (ENSXETG00000003158) #11	yes1 (ENSXETG00000019176) #12	adcyap1 (ENSXETG00000039137) #13	mettl4 (ENSXETG00000037053) #14	smchd1 (ENSXETG00000001609) #16	emilin2 (ENSXETG00000001613) #17	lpin2 (ENSXETG00000001617) #18	myom1 (ENSXETG00000001619) #19	myl12b (ENSXETG00000025009) #21	tgif1 (ENSXETG00000046401) #22	dlgap1 (ENSXETG00000033741) #23	ENSXETG00000043658	zbtb14 (ENSXETG00000002279) #26	epb41l3 (ENSXETG00000004959) #27	ENSXETG00000049119	tmem200c (ENSXETG00000037936) #28	ENSXETG00000043421	ENSXETG00000004957 #30	lama1 (ENSXETG00000004956) #32	lrrc30 (ENSXETG00000025023)	ptprm (ENSXETG00000004287) #34	rab12 (ENSXETG00000004289) #35	MTCL1 (ENSXETG00000004290) #36	acss2.2 (ENSXETG00000004291)	ENSXETG00000047385
Leishan spiny toad	MODERN SPECIES	8	CLUL1 (ENSLLEG00000019704) #9	ENSLLEG00000019880	ENSLLEG00000019921 #10	ENOSF1 (ENSLLEG00000020156) #11	YES1 (ENSLLEG00000020600) #12	ADCYAP1 (ENSLLEG00000020917) #13	ENSLLEG00000021008	ENSLLEG00000021053	METTL4 (ENSLLEG00000021094) #14	SMCHD1 (ENSLLEG00000021224) #16	EMILIN2 (ENSLLEG00000022020) #17	LPIN2 (ENSLLEG00000022166) #18	MYOM1 (ENSLLEG00000022820) #19	ENSLLEG00000023832 #21	ENSLLEG00000023887	TGIF1 (ENSLLEG00000023912) #22	DLGAP1 (ENSLLEG00000023955) #23	ENSLLEG00000024169	ENSLLEG00000024211	ENSLLEG00000024225	ZBTB14 (ENSLLEG00000024248) #26	EPB41L3 (ENSLLEG00000024445) #27	ENSLLEG00000025963	ENSLLEG00000025986	ENSLLEG00000014630	ENSLLEG00000014682	ENSLLEG00000014770	TMEM200C (ENSLLEG00000014826) #28	ARHGAP28 (ENSLLEG00000014865) #30	LAMA1 (ENSLLEG00000015205) #32	ENSLLEG00000015799
Coelacanth	DUPLICATION
Coelacanth	MODERN SPECIES	429											ENSLACG00000017030	ENSLACG00000016335	EMILIN3 (ENSLACG00000016208) ##17	ENSLACG00000015983	MYL9 (ENSLACG00000015822)	ENSLACG00000015647 #22	DLGAP4 (ENSLACG00000014794)	ENSLACG00000014011	ENSLACG00000012439	ENSLACG00000011646	AAR2 (ENSLACG00000011312)	EPB41L1 (ENSLACG00000022299)	SRSF6 (ENSLACG00000005466)	L3MBTL1 (ENSLACG00000003590)	SGK2 (ENSLACG00000001395)
Coelacanth	MODERN SPECIES	640									METTL4 (ENSLACG00000015273) #14	SMCHD1 (ENSLACG00000014176) #16	ENSLACG00000014064	EMILIN2 (ENSLACG00000013248) #17	LPIN2 (ENSLACG00000012922) #18	MYOM1 (ENSLACG00000011081) #19	myl12.2 (ENSLACG00000010656) #21	TGIF1 (ENSLACG00000009903) #22	DLGAP1 (ENSLACG00000006045) #23