Murinae	ANCESTRAL SPECIES	6	ENSGT00940000156995	ENSGT00390000011000	ENSGT00940000155768.B	ENSGT00860000136362	ENSGT00940000159685	ENSGT00440000038328	ENSGT00940000155796 #11	ENSGT00520000059663 #12	ENSGT00950000182902.b.b.a #13	ENSGT00390000008202 #14	ENSGT00940000159604 #15	ENSGT00950000182928.A.a.a #16	ENSGT00940000159328 #17	ENSGT00940000157430 #19	ENSGT00940000154049.b #21	ENSGT00940000154049.a #22	ENSGT00940000157855 #23	ENSGT00390000001735 #24	ENSGT00510000048311 #25	ENSGT00940000156919 #26	ENSGT00390000008688 #27	ENSGT00940000160337 #28	ENSGT00390000002453 #29	ENSGT00940000153491.b.b.a #31	ENSGT00390000016067 #32	ENSGT00940000161894 #33	ENSGT00390000017317 #34	ENSGT00390000012340	ENSGT00940000163490 #35	ENSGT00390000012296 #37	ENSGT01010000222313.A.b.b.b
Mus	ANCESTRAL SPECIES	2	ENSGT00940000156995	ENSGT00390000011000	ENSGT00940000155768.B	ENSGT00860000136362	ENSGT00940000159685	ENSGT00440000038328	ENSGT00940000155796 #11	ENSGT00520000059663 #12	ENSGT00950000182902.b.b.a #13	ENSGT00390000008202 #14	ENSGT00940000159604 #15	ENSGT00950000182928.A.a.a #16	ENSGT00940000159328 #17	ENSGT00940000157430 #19	ENSGT00940000154049.b #21	ENSGT00940000154049.a #22	ENSGT00940000157855 #23	ENSGT00390000001735 #24	ENSGT00510000048311 #25	ENSGT00940000156919 #26	ENSGT00390000008688 #27	ENSGT00940000160337 #28	ENSGT00390000002453 #29	ENSGT00940000153491.b.b.a #31	ENSGT00390000016067 #32	ENSGT00940000161894 #33	ENSGT00390000017317 #34	ENSGT00390000012340	ENSGT00940000163490 #35	ENSGT00390000012296 #37	ENSGT01010000222313.A.b.b.b
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000156995	ENSGT00390000011000	ENSGT00940000155768.B	ENSGT00860000136362	ENSGT00940000159685	ENSGT00440000038328	ENSGT00940000155796 #11	ENSGT00520000059663 #12	ENSGT00950000182902.b.b.a #13	ENSGT00390000008202 #14	ENSGT00940000159604 #15	ENSGT00950000182928.A.a.a #16	ENSGT00940000159328 #17	ENSGT00940000157430 #19	ENSGT00940000154049.b #21	ENSGT00940000154049.a #22	ENSGT00940000157855 #23	ENSGT00390000001735 #24	ENSGT00510000048311 #25	ENSGT00940000156919 #26	ENSGT00390000008688 #27	ENSGT00940000160337 #28	ENSGT00390000002453 #29	ENSGT00940000153491.b.b.a #31	ENSGT00390000016067 #32	ENSGT00940000161894 #33	ENSGT00390000017317 #34	ENSGT00390000012340	ENSGT00940000163490 #35	ENSGT00390000012296 #37	ENSGT01010000222313.A.b.b.b
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000156995	ENSGT00390000011000	ENSGT00940000155768.B	ENSGT00860000136362	ENSGT00940000159685	ENSGT00440000038328	ENSGT00940000155796 #11	ENSGT00520000059663 #12	ENSGT00950000182902.b.b.a #13	ENSGT00390000008202 #14	ENSGT00940000159604 #15	ENSGT00950000182928.A.a.a #16	ENSGT00940000159328 #17	ENSGT00940000157430 #19	ENSGT00940000154049.b #21	ENSGT00940000154049.a #22	ENSGT00940000157855 #23	ENSGT00390000001735 #24	ENSGT00510000048311 #25	ENSGT00940000156919 #26	ENSGT00390000008688 #27	ENSGT00940000160337 #28	ENSGT00390000002453 #29	ENSGT00940000153491.b.b.a #31	ENSGT00390000016067 #32	ENSGT00940000161894 #33	ENSGT00390000017317 #34	ENSGT00390000012340	ENSGT00940000163490 #35	ENSGT00390000012296 #37	ENSGT01010000222313.A.b.b.b
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000156995	ENSGT00390000011000	ENSGT00940000155768.B	ENSGT00860000136362	ENSGT00940000159685	ENSGT00440000038328	ENSGT00940000155796 #11	ENSGT00520000059663 #12	ENSGT00950000182902.b.b.a #13	ENSGT00390000008202 #14	ENSGT00940000159604 #15	ENSGT00950000182928.A.a.a #16	ENSGT00940000159328 #17	ENSGT00940000157430 #19	ENSGT00940000154049.b #21	ENSGT00940000154049.a #22	ENSGT00940000157855 #23	ENSGT00390000001735 #24	ENSGT00510000048311 #25	ENSGT00940000156919 #26	ENSGT00390000008688 #27	ENSGT00940000160337 #28	ENSGT00390000002453 #29	ENSGT00940000153491.b.b.a #31	ENSGT00390000016067 #32	ENSGT00940000161894 #33	ENSGT00390000017317 #34	ENSGT00390000012340	ENSGT00940000163490 #35	ENSGT00900000143173 #36	ENSGT00390000012296 #37
Steppe mouse	MODERN SPECIES	3302					Taok1 (ENSMSIG00000025939) #11	ENSMSIG00000025930 #12	Abhd15 (ENSMSIG00000025926) #13	Trp53i13 (ENSMSIG00000025913) #14	Git1 (ENSMSIG00000025882) #15	ENSMSIG00000025858 #16	Coro6 (ENSMSIG00000025660) #17	ENSMSIG00000025656 #18	Ssh2 (ENSMSIG00000025588) #19	ENSMSIG00000025570 #20	Efcab5 (ENSMSIG00000025530) #21	Nsrp1 (ENSMSIG00000025473) #22	Slc6a4 (ENSMSIG00000025438) #23	Blmh (ENSMSIG00000025419) #24	Tmigd1 (ENSMSIG00000025382) #25	Cpd (ENSMSIG00000025347) #26	Gosr1 (ENSMSIG00000025334) #27	Trarg1 (ENSMSIG00000025329) #28	Bhlha9 (ENSMSIG00000025324) #29	ENSMSIG00000025320 #30	Abr (ENSMSIG00000024887) #31	Timm22 (ENSMSIG00000024863) #32	Nxn (ENSMSIG00000024846) #33	Mrm3 (ENSMSIG00000024835) #34	Dbil5 (ENSMSIG00000024828) #35	ENSMSIG00000024822 #36	Gemin4 (ENSMSIG00000024775) #37
spretus	MODERN SPECIES	2	Sez6 (MGP_SPRETEiJ_G0017627)	Pipox (MGP_SPRETEiJ_G0017626)	Gm10277 (MGP_SPRETEiJ_G0017625)	Myo18a (MGP_SPRETEiJ_G0017624)	Cryba1 (MGP_SPRETEiJ_G0017623)	Nufip2 (MGP_SPRETEiJ_G0017622)	Taok1 (MGP_SPRETEiJ_G0017621) #11	MGP_SPRETEiJ_G0017620 #12	Abhd15 (MGP_SPRETEiJ_G0017619) #13	Trp53i13 (MGP_SPRETEiJ_G0017618) #14	Git1 (MGP_SPRETEiJ_G0017617) #15	Ankrd13b (MGP_SPRETEiJ_G0017616) #16	Coro6 (MGP_SPRETEiJ_G0017615) #17	Ssh2 (MGP_SPRETEiJ_G0017614) #19	Efcab5 (MGP_SPRETEiJ_G0017613) #21	MGP_SPRETEiJ_G0017612 #22	Slc6a4 (MGP_SPRETEiJ_G0017611) #23	Blmh (MGP_SPRETEiJ_G0017610) #24	Tmigd1 (MGP_SPRETEiJ_G0017609) #25	Cpd (MGP_SPRETEiJ_G0017608) #26	Gosr1 (MGP_SPRETEiJ_G0017607) #27	Trarg1 (MGP_SPRETEiJ_G0017606) #28	Bhlha9 (MGP_SPRETEiJ_G0017605) #29	MGP_SPRETEiJ_G0017604 #31	Timm22 (MGP_SPRETEiJ_G0017603) #32	Nxn (MGP_SPRETEiJ_G0017602) #33	Mrm3 (MGP_SPRETEiJ_G0017601) #34	Dbil5 (MGP_SPRETEiJ_G0017600) #35	Tlcd3a (MGP_SPRETEiJ_G0017598)	Glod4 (MGP_SPRETEiJ_G0017597)	Vps53 (MGP_SPRETEiJ_G0017596)
Mouse	MODERN SPECIES	2	Phf12 (ENSMUSG00000037791)	Sez6 (ENSMUSG00000000632)	Pipox (ENSMUSG00000017453)	Gm10277 (ENSMUSG00000069804)	Myo18a (ENSMUSG00000000631)	Cryba1 (ENSMUSG00000000724)	Nufip2 (ENSMUSG00000037857)	Taok1 (ENSMUSG00000017291) #11	Abhd15 (ENSMUSG00000000686) #13	Trp53i13 (ENSMUSG00000044328) #14	Git1 (ENSMUSG00000011877) #15	Ankrd13b (ENSMUSG00000037907) #16	Coro6 (ENSMUSG00000020836) #17	Ssh2 (ENSMUSG00000037926) #19	Efcab5 (ENSMUSG00000050944) #21	Nsrp1 (ENSMUSG00000037958) #22	Slc6a4 (ENSMUSG00000020838) #23	Blmh (ENSMUSG00000020840) #24	Tmigd1 (ENSMUSG00000020839) #25	Cpd (ENSMUSG00000020841) #26	Gosr1 (ENSMUSG00000010392) #27	Trarg1 (ENSMUSG00000046275) #28	Bhlha9 (ENSMUSG00000044243) #29	Abr (ENSMUSG00000017631) #31	Timm22 (ENSMUSG00000020843) #32	Nxn (ENSMUSG00000020844) #33	Mrm3 (ENSMUSG00000038046) #34	Dbil5 (ENSMUSG00000038057) #35	Gemin4 (ENSMUSG00000049396) #37	Tlcd3a (ENSMUSG00000069808)	Glod4 (ENSMUSG00000017286)
Ryukyu mouse	MODERN SPECIES	2	Sez6 (MGP_CAROLIEiJ_G0016784)	Pipox (MGP_CAROLIEiJ_G0016783)	Gm10277 (MGP_CAROLIEiJ_G0016782)	Myo18a (MGP_CAROLIEiJ_G0016781)	Cryba1 (MGP_CAROLIEiJ_G0016780)	Nufip2 (MGP_CAROLIEiJ_G0016779)	Taok1 (MGP_CAROLIEiJ_G0016778) #11	MGP_CAROLIEiJ_G0016777 #12	Abhd15 (MGP_CAROLIEiJ_G0016776) #13	Trp53i13 (MGP_CAROLIEiJ_G0016775) #14	Git1 (MGP_CAROLIEiJ_G0016774) #15	Ankrd13b (MGP_CAROLIEiJ_G0016773) #16	Coro6 (MGP_CAROLIEiJ_G0016772) #17	Ssh2 (MGP_CAROLIEiJ_G0016771) #19	Efcab5 (MGP_CAROLIEiJ_G0016770) #21	Nsrp1 (MGP_CAROLIEiJ_G0016769) #22	Slc6a4 (MGP_CAROLIEiJ_G0016768) #23	Blmh (MGP_CAROLIEiJ_G0016767) #24	Tmigd1 (MGP_CAROLIEiJ_G0016766) #25	Cpd (MGP_CAROLIEiJ_G0016765) #26	Gosr1 (MGP_CAROLIEiJ_G0016764) #27	Trarg1 (MGP_CAROLIEiJ_G0016763) #28	Bhlha9 (MGP_CAROLIEiJ_G0016762) #29	MGP_CAROLIEiJ_G0016761 #31	Timm22 (MGP_CAROLIEiJ_G0016760) #32	Nxn (MGP_CAROLIEiJ_G0016759) #33	Mrm3 (MGP_CAROLIEiJ_G0016758) #34	Dbil5 (MGP_CAROLIEiJ_G0016757) #35	Gemin4 (MGP_CAROLIEiJ_G0016756) #37	Tlcd3a (MGP_CAROLIEiJ_G0016755)	Glod4 (MGP_CAROLIEiJ_G0016754)
Shrew mouse	MODERN SPECIES	5	Sez6 (MGP_PahariEiJ_G0017921)	Pipox (MGP_PahariEiJ_G0017920)	MGP_PahariEiJ_G0017919	Myo18a (MGP_PahariEiJ_G0017918)	Cryba1 (MGP_PahariEiJ_G0017917)	Nufip2 (MGP_PahariEiJ_G0017916)	Taok1 (MGP_PahariEiJ_G0017915) #11	MGP_PahariEiJ_G0017914 #12	Abhd15 (MGP_PahariEiJ_G0017913) #13	Trp53i13 (MGP_PahariEiJ_G0017912) #14	Git1 (MGP_PahariEiJ_G0017911) #15	MGP_PahariEiJ_G0017910 #16	Coro6 (MGP_PahariEiJ_G0017909) #17	Ssh2 (MGP_PahariEiJ_G0017908) #19	Efcab5 (MGP_PahariEiJ_G0017907) #21	Nsrp1 (MGP_PahariEiJ_G0017906) #22	MGP_PahariEiJ_G0017905 #23	Blmh (MGP_PahariEiJ_G0017904) #24	Tmigd1 (MGP_PahariEiJ_G0017903) #25	Cpd (MGP_PahariEiJ_G0017902) #26	Gosr1 (MGP_PahariEiJ_G0017901) #27	Trarg1 (MGP_PahariEiJ_G0017900) #28	Bhlha9 (MGP_PahariEiJ_G0017899) #29	MGP_PahariEiJ_G0017898 #31	Timm22 (MGP_PahariEiJ_G0017897) #32	Nxn (MGP_PahariEiJ_G0017896) #33	Mrm3 (MGP_PahariEiJ_G0017895) #34	Dbil5 (MGP_PahariEiJ_G0017894) #35	Gemin4 (MGP_PahariEiJ_G0017893) #37	Tlcd3a (MGP_PahariEiJ_G0017892)	Glod4 (MGP_PahariEiJ_G0017891)
Rat	MODERN SPECIES	1	Pipox (ENSRNOG00000008798)	Myo18a (ENSRNOG00000033101)	Cryba1 (ENSRNOG00000008700)	Nufip2 (ENSRNOG00000024964)	ENSRNOG00000069823	ENSRNOG00000063840	Taok1 (ENSRNOG00000015692) #11	Abhd15 (ENSRNOG00000015002) #13	Tp53i13 (ENSRNOG00000022615) #14	Git1 (ENSRNOG00000061270) #15	Ankrd13b (ENSRNOG00000014742) #16	Coro6 (ENSRNOG00000014496) #17	AABR07030019.1 (ENSRNOG00000050113)	Ssh2 (ENSRNOG00000014285) #19	Efcab5 (ENSRNOG00000022536) #21	Nsrp1 (ENSRNOG00000062400) #22	Slc6a4 (ENSRNOG00000003476) #23	Blmh (ENSRNOG00000003563) #24	Tmigd1 (ENSRNOG00000003865) #25	Cpd (ENSRNOG00000003873) #26	Trarg1 (ENSRNOG00000022239) #28	Bhlha9 (ENSRNOG00000022232) #29	Gosr1 (ENSRNOG00000070896) #27	Gosr1 (ENSRNOG00000070572) #27	Gosr1 (ENSRNOG00000003971) #27	Abr (ENSRNOG00000056837) #31	Timm22 (ENSRNOG00000007988) #32	Nxn (ENSRNOG00000008178) #33	Mrm3 (ENSRNOG00000037238) #34	Gemin4 (ENSRNOG00000055236) #36	Gemin4 (ENSRNOG00000007788) #37