Murinae	ANCESTRAL SPECIES	31	ENSGT00940000160059.a.a #7	ENSGT00940000153458.A ##8	ENSGT00390000007809.b #9	ENSGT00390000003759 #10	ENSGT00940000159119.b #11	ENSGT00530000063891 #12	ENSGT00940000161119 #13	ENSGT00940000159935 #14	ENSGT00580000081600.c.a #15	ENSGT01010000222287.B.a.b.a #16	ENSGT00940000155757 #17	ENSGT00940000156280 #18	ENSGT00940000158304 #19	ENSGT00390000020445	ENSGT00940000163221 #21	ENSGT00940000155281 #22	ENSGT00940000158227 #24	ENSGT00940000162156 #25	ENSGT00950000183019.f.a #26	ENSGT00940000159945 #27	ENSGT00940000159301 #28	ENSGT00940000161049 #29	ENSGT00390000010557 #30	ENSGT00940000158945 #31	ENSGT01050000244857.B.a #32	ENSGT00630000089910 #33	ENSGT00940000154067.d #34	ENSGT00940000158974 #35	ENSGT00940000154365.a.a #36	ENSGT00940000159586 #37	ENSGT00390000014069.a
Mus	ANCESTRAL SPECIES	24	ENSGT00940000160059.a.a #7	ENSGT00940000153458.A ##8	ENSGT00390000007809.b #9	ENSGT00390000003759 #10	ENSGT00940000159119.b #11	ENSGT00530000063891 #12	ENSGT00940000161119 #13	ENSGT00940000159935 #14	ENSGT00580000081600.c.a #15	ENSGT01010000222287.B.a.b.a #16	ENSGT00940000155757 #17	ENSGT00940000156280 #18	ENSGT00940000158304 #19	ENSGT00390000020445	ENSGT00940000163221 #21	ENSGT00940000155281 #22	ENSGT00940000158227 #24	ENSGT00800000125329 #23	ENSGT00940000162156 #25	ENSGT00950000183019.f.a #26	ENSGT00940000159945 #27	ENSGT00940000159301 #28	ENSGT00940000161049 #29	ENSGT00390000010557 #30	ENSGT00940000158945 #31	ENSGT01050000244857.B.a #32	ENSGT00630000089910 #33	ENSGT00940000154067.d #34	ENSGT00940000158974 #35	ENSGT00940000154365.a.a #36	ENSGT00940000159586 #37
Shrew mouse	MODERN SPECIES	11	Mnx1 (MGP_PahariEiJ_G0021817) #7	MGP_PahariEiJ_G0021816 #8	Lmbr1 (MGP_PahariEiJ_G0021815) #9	Rnf32 (MGP_PahariEiJ_G0021814) #10	Shh (MGP_PahariEiJ_G0021813) #11	Rbm33 (MGP_PahariEiJ_G0021812) #12	MGP_PahariEiJ_G0021811 #13	En2 (MGP_PahariEiJ_G0021810) #14	Insig1 (MGP_PahariEiJ_G0021809) #15	Htr5a (MGP_PahariEiJ_G0021808) #16	Paxip1 (MGP_PahariEiJ_G0021807) #17	Dpp6 (MGP_PahariEiJ_G0021806) #18	MGP_PahariEiJ_G0021805 #19	MGP_PahariEiJ_G0021804 #20	Cct8l1 (MGP_PahariEiJ_G0021803) #21	Kmt2c (MGP_PahariEiJ_G0021802) #22	MGP_PahariEiJ_G0021801 #23	Galnt11 (MGP_PahariEiJ_G0021800) #24	Galntl5 (MGP_PahariEiJ_G0021799) #25	Prkag2 (MGP_PahariEiJ_G0021798) #26	Rheb (MGP_PahariEiJ_G0021797) #27	Crygn (MGP_PahariEiJ_G0021796) #28	Wdr86 (MGP_PahariEiJ_G0021795) #29	Nub1 (MGP_PahariEiJ_G0021794) #30	Smarcd3 (MGP_PahariEiJ_G0021793) #31	Chpf2 (MGP_PahariEiJ_G0021792) #32	Abcf2 (MGP_PahariEiJ_G0021791) #33	Iqca1l (MGP_PahariEiJ_G0021790) #34	Asb10 (MGP_PahariEiJ_G0021789) #35	Gbx1 (MGP_PahariEiJ_G0021788) #36	MGP_PahariEiJ_G0021787 #37
Mus_A	ANCESTRAL SPECIES	6	ENSGT00940000160059.a.a #7	ENSGT00940000153458.A ##8	ENSGT00390000007809.b #9	ENSGT00390000003759 #10	ENSGT00940000159119.b #11	ENSGT00530000063891 #12	ENSGT00940000161119 #13	ENSGT00940000159935 #14	ENSGT00580000081600.c.a #15	ENSGT01010000222287.B.a.b.a #16	ENSGT00940000155757 #17	ENSGT00940000156280 #18	ENSGT00940000158304 #19	ENSGT00390000020445	ENSGT00940000163221 #21	ENSGT00940000155281 #22	ENSGT00940000158227 #24	ENSGT00800000125329 #23	ENSGT00940000162156 #25	ENSGT00950000183019.f.a #26	ENSGT00940000159945 #27	ENSGT00940000159301 #28	ENSGT00940000161049 #29	ENSGT00390000010557 #30	ENSGT00940000158945 #31	ENSGT01050000244857.B.a #32	ENSGT00630000089910 #33	ENSGT00940000154067.d #34	ENSGT00940000158974 #35	ENSGT00940000154365.a.a #36	ENSGT00940000159586 #37
Mus_B	ANCESTRAL SPECIES	4	ENSGT00940000160059.a.a #7	ENSGT00940000153458.A ##8	ENSGT00390000007809.b #9	ENSGT00390000003759 #10	ENSGT00940000159119.b #11	ENSGT00530000063891 #12	ENSGT00940000161119 #13	ENSGT00940000159935 #14	ENSGT00580000081600.c.a #15	ENSGT01010000222287.B.a.b.a #16	ENSGT00940000155757 #17	ENSGT00940000156280 #18	ENSGT00940000158304 #19	ENSGT00390000020445	ENSGT00940000163221 #21	ENSGT00940000155281 #22	ENSGT00940000158227 #24	ENSGT00800000125329 #23	ENSGT00940000162156 #25	ENSGT00950000183019.f.a #26	ENSGT00940000159945 #27	ENSGT00940000159301 #28	ENSGT00940000161049 #29	ENSGT00390000010557 #30	ENSGT00940000158945 #31	ENSGT01050000244857.B.a #32	ENSGT00630000089910 #33	ENSGT00940000154067.d #34	ENSGT00940000158974 #35	ENSGT00940000154365.a.a #36	ENSGT00940000159586 #37
Mouse	MODERN SPECIES	14	Gm7361 (ENSMUSG00000059645)	Gm10220 (ENSMUSG00000067698)	5031410I06Rik (ENSMUSG00000051940)	Gm10471 (ENSMUSG00000073116)	Gm7347 (ENSMUSG00000073117)	Speer4a (ENSMUSG00000073119)	Gm5862 (ENSMUSG00000067700)	Gm1979 (ENSMUSG00000091049)	Gm21698 (ENSMUSG00000096045)	Gm21680 (ENSMUSG00000106627)	Gm21671 (ENSMUSG00000095550)	Gm21663 (ENSMUSG00000104824)	Actr3b (ENSMUSG00000056367) #19	Xrcc2 (ENSMUSG00000028933)	Cct8l1 (ENSMUSG00000038044) #21	Kmt2c (ENSMUSG00000038056) #22	E130116L18Rik (ENSMUSG00000054116) #23	Galnt11 (ENSMUSG00000038072) #24	Galntl5 (ENSMUSG00000028938) #25	Prkag2 (ENSMUSG00000028944) #26	Rheb (ENSMUSG00000028945) #27	Crygn (ENSMUSG00000038135) #28	Wdr86 (ENSMUSG00000055235) #29	Nub1 (ENSMUSG00000028954) #30	Smarcd3 (ENSMUSG00000028949) #31	Chpf2 (ENSMUSG00000038181) #32	Abcf2 (ENSMUSG00000028953) #33	Iqca1l (ENSMUSG00000038199) #34	Asb10 (ENSMUSG00000038204) #35	Gbx1 (ENSMUSG00000067724) #36	Agap3 (ENSMUSG00000023353) #37
Mus_C	ANCESTRAL SPECIES	4	ENSGT00940000160059.a.a #7	ENSGT00940000153458.A ##8	ENSGT00390000007809.b #9	ENSGT00390000003759 #10	ENSGT00940000159119.b #11	ENSGT00530000063891 #12	ENSGT00940000161119 #13	ENSGT00940000159935 #14	ENSGT00580000081600.c.a #15	ENSGT01010000222287.B.a.b.a #16	ENSGT00940000155757 #17	ENSGT00940000156280 #18	ENSGT00940000158304 #19	ENSGT00390000020445	ENSGT00940000163221 #21	ENSGT00940000155281 #22	ENSGT00940000158227 #24	ENSGT00800000125329 #23	ENSGT00940000162156 #25	ENSGT00950000183019.f.a #26	ENSGT00940000159945 #27	ENSGT00940000159301 #28	ENSGT00940000161049 #29	ENSGT00390000010557 #30	ENSGT00940000158945 #31	ENSGT01050000244857.B.a #32	ENSGT00630000089910 #33	ENSGT00940000154067.d #34	ENSGT00940000158974 #35	ENSGT00940000154365.a.a #36	ENSGT00940000159586 #37
Steppe mouse	MODERN SPECIES	34											Actr3b (ENSMSIG00000015155) #19	Xrcc2 (ENSMSIG00000015358)	ENSMSIG00000015382	Cct8l1 (ENSMSIG00000015391) #21	ENSMSIG00000015400	Kmt2c (ENSMSIG00000015422) #22	Galnt11 (ENSMSIG00000016201) #24	E130116L18Rik (ENSMSIG00000016270) #23	Prkag2 (ENSMSIG00000016296) #26	ENSMSIG00000016358	Rheb (ENSMSIG00000016368) #27	Crygn (ENSMSIG00000016389) #28	ENSMSIG00000016410 #29	ENSMSIG00000016414	Nub1 (ENSMSIG00000016418) #30	Smarcd3 (ENSMSIG00000016483) #31	Chpf2 (ENSMSIG00000016589) #32	Abcf2 (ENSMSIG00000016614) #33	Iqca1l (ENSMSIG00000016636) #34	ENSMSIG00000016686 #35	ENSMSIG00000016756 #37
spretus	MODERN SPECIES	14	Mnx1 (MGP_SPRETEiJ_G0028040) #7	MGP_SPRETEiJ_G0028039 ##8	Lmbr1 (MGP_SPRETEiJ_G0028038) #9	MGP_SPRETEiJ_G0028037 #10	Shh (MGP_SPRETEiJ_G0028036) #11	Rbm33 (MGP_SPRETEiJ_G0028035) #12	MGP_SPRETEiJ_G0028034 #13	En2 (MGP_SPRETEiJ_G0028033) #14	Insig1 (MGP_SPRETEiJ_G0028032) #15	Htr5a (MGP_SPRETEiJ_G0028031) #16	Paxip1 (MGP_SPRETEiJ_G0028030) #17	Dpp6 (MGP_SPRETEiJ_G0028029) #18	Actr3b (MGP_SPRETEiJ_G0028028) #19	Xrcc2 (MGP_SPRETEiJ_G0028027)	Cct8l1 (MGP_SPRETEiJ_G0028026) #21	Kmt2c (MGP_SPRETEiJ_G0028025) #22	E130116L18Rik (MGP_SPRETEiJ_G0028024) #23	Galnt11 (MGP_SPRETEiJ_G0028023) #24	Galntl5 (MGP_SPRETEiJ_G0028022) #25	Prkag2 (MGP_SPRETEiJ_G0028021) #26	Rheb (MGP_SPRETEiJ_G0028020) #27	Crygn (MGP_SPRETEiJ_G0028019) #28	Wdr86 (MGP_SPRETEiJ_G0028018) #29	Nub1 (MGP_SPRETEiJ_G0028017) #30	Smarcd3 (MGP_SPRETEiJ_G0028016) #31	Chpf2 (MGP_SPRETEiJ_G0028015) #32	Abcf2 (MGP_SPRETEiJ_G0028014) #33	Iqca1l (MGP_SPRETEiJ_G0028013) #34	Asb10 (MGP_SPRETEiJ_G0028012) #35	Gbx1 (MGP_SPRETEiJ_G0028011) #36	Agap3 (MGP_SPRETEiJ_G0028010) #37
Ryukyu mouse	MODERN SPECIES	14	Ube3c (MGP_CAROLIEiJ_G0027045)	Mnx1 (MGP_CAROLIEiJ_G0027044) #7	MGP_CAROLIEiJ_G0027043 ##8	Lmbr1 (MGP_CAROLIEiJ_G0027042) #9	Rnf32 (MGP_CAROLIEiJ_G0027041) #10	Shh (MGP_CAROLIEiJ_G0027040) #11	Rbm33 (MGP_CAROLIEiJ_G0027039) #12	Cnpy1 (MGP_CAROLIEiJ_G0027038) #13	En2 (MGP_CAROLIEiJ_G0027037) #14	Insig1 (MGP_CAROLIEiJ_G0027036) #15	Htr5a (MGP_CAROLIEiJ_G0027035) #16	Paxip1 (MGP_CAROLIEiJ_G0027034) #17	Dpp6 (MGP_CAROLIEiJ_G0027033) #18	Xrcc2 (MGP_CAROLIEiJ_G0027031)	Cct8l1 (MGP_CAROLIEiJ_G0027030) #21	Kmt2c (MGP_CAROLIEiJ_G0027029) #22	E130116L18Rik (MGP_CAROLIEiJ_G0027028) #23	Galnt11 (MGP_CAROLIEiJ_G0027027) #24	Galntl5 (MGP_CAROLIEiJ_G0027026) #25	Prkag2 (MGP_CAROLIEiJ_G0027025) #26	Rheb (MGP_CAROLIEiJ_G0027024) #27	Crygn (MGP_CAROLIEiJ_G0027023) #28	MGP_CAROLIEiJ_G0027022 #29	Nub1 (MGP_CAROLIEiJ_G0027021) #30	Smarcd3 (MGP_CAROLIEiJ_G0027020) #31	Chpf2 (MGP_CAROLIEiJ_G0027019) #32	Abcf2 (MGP_CAROLIEiJ_G0027018) #33	Iqca1l (MGP_CAROLIEiJ_G0027017) #34	Asb10 (MGP_CAROLIEiJ_G0027016) #35	Gbx1 (MGP_CAROLIEiJ_G0027015) #36	Agap3 (MGP_CAROLIEiJ_G0027014) #37
Rat	MODERN SPECIES	14	Lmbr1 (ENSRNOG00000059589) #9	Rnf32 (ENSRNOG00000005691) #10	Shh (ENSRNOG00000006120) #11	Rbm33 (ENSRNOG00000006718) #12	Cnpy1 (ENSRNOG00000028311) #13	En2 (ENSRNOG00000006846) #14	Insig1 (ENSRNOG00000006859) #15	Htr5a (ENSRNOG00000007066) #16	Paxip1 (ENSRNOG00000007131) #17	Dpp6 (ENSRNOG00000030547) #18	Actr3b (ENSRNOG00000031855) #19	Xrcc2 (ENSRNOG00000007493)	AABR07059161.1 (ENSRNOG00000051942)	Rpl10a-ps9 (ENSRNOG00000047067)	Cct8l2 (ENSRNOG00000047114) #21	Kmt2c (ENSRNOG00000061080) #22	Galnt11 (ENSRNOG00000008117) #24	Galntl5 (ENSRNOG00000040301) #25	LOC120102456 (ENSRNOG00000062492)	Prkag2 (ENSRNOG00000009085) #26	Rheb (ENSRNOG00000050578) #27	Crygn (ENSRNOG00000009226) #28	Wdr86 (ENSRNOG00000025735) #29	Nub1 (ENSRNOG00000009282) #30	AC099360.1 (ENSRNOG00000025214)	Smarcd3 (ENSRNOG00000010077) #31	Chpf2 (ENSRNOG00000010466) #32	Abcf2 (ENSRNOG00000010609) #33	Iqca1l (ENSRNOG00000011092) #34	Asb10 (ENSRNOG00000024885) #35	Gbx1 (ENSRNOG00000013369) #36