Mus_A	ANCESTRAL SPECIES	6	ENSGT00940000160059.a.a #8	ENSGT00940000153458.A #9	ENSGT00390000007809.b #10	ENSGT00390000003759 #11	ENSGT00940000159119.b #12	ENSGT00530000063891 #13	ENSGT00940000161119 #14	ENSGT00940000159935 #15	ENSGT00580000081600.c.a #16	ENSGT01010000222287.B.a.b.a #17	ENSGT00940000155757 #18	ENSGT00940000156280 #19	ENSGT00940000158304	ENSGT00390000020445 #20	ENSGT00940000163221 #21	ENSGT00940000155281 #22	ENSGT00940000158227 #24	ENSGT00800000125329 #23	ENSGT00940000162156 #25	ENSGT00950000183019.f.a #26	ENSGT00940000159945 #27	ENSGT00940000159301 #28	ENSGT00940000161049 #29	ENSGT00390000010557 #30	ENSGT00940000158945 #31	ENSGT01050000244857.B.a #32	ENSGT00630000089910 #33	ENSGT00940000154067.d #34	ENSGT00940000158974 #35	ENSGT00940000154365.a.a #36	ENSGT00940000159586 #37
Ryukyu mouse	MODERN SPECIES	14	Ube3c (MGP_CAROLIEiJ_G0027045) #7	Mnx1 (MGP_CAROLIEiJ_G0027044) #8	MGP_CAROLIEiJ_G0027043 #9	Lmbr1 (MGP_CAROLIEiJ_G0027042) #10	Rnf32 (MGP_CAROLIEiJ_G0027041) #11	Shh (MGP_CAROLIEiJ_G0027040) #12	Rbm33 (MGP_CAROLIEiJ_G0027039) #13	Cnpy1 (MGP_CAROLIEiJ_G0027038) #14	En2 (MGP_CAROLIEiJ_G0027037) #15	Insig1 (MGP_CAROLIEiJ_G0027036) #16	Htr5a (MGP_CAROLIEiJ_G0027035) #17	Paxip1 (MGP_CAROLIEiJ_G0027034) #18	Dpp6 (MGP_CAROLIEiJ_G0027033) #19	Xrcc2 (MGP_CAROLIEiJ_G0027031) #20	Cct8l1 (MGP_CAROLIEiJ_G0027030) #21	Kmt2c (MGP_CAROLIEiJ_G0027029) #22	E130116L18Rik (MGP_CAROLIEiJ_G0027028) #23	Galnt11 (MGP_CAROLIEiJ_G0027027) #24	Galntl5 (MGP_CAROLIEiJ_G0027026) #25	Prkag2 (MGP_CAROLIEiJ_G0027025) #26	Rheb (MGP_CAROLIEiJ_G0027024) #27	Crygn (MGP_CAROLIEiJ_G0027023) #28	MGP_CAROLIEiJ_G0027022 #29	Nub1 (MGP_CAROLIEiJ_G0027021) #30	Smarcd3 (MGP_CAROLIEiJ_G0027020) #31	Chpf2 (MGP_CAROLIEiJ_G0027019) #32	Abcf2 (MGP_CAROLIEiJ_G0027018) #33	Iqca1l (MGP_CAROLIEiJ_G0027017) #34	Asb10 (MGP_CAROLIEiJ_G0027016) #35	Gbx1 (MGP_CAROLIEiJ_G0027015) #36	Agap3 (MGP_CAROLIEiJ_G0027014) #37
Mus_B	ANCESTRAL SPECIES	4	ENSGT00940000160059.a.a #8	ENSGT00940000153458.A #9	ENSGT00390000007809.b #10	ENSGT00390000003759 #11	ENSGT00940000159119.b #12	ENSGT00530000063891 #13	ENSGT00940000161119 #14	ENSGT00940000159935 #15	ENSGT00580000081600.c.a #16	ENSGT01010000222287.B.a.b.a #17	ENSGT00940000155757 #18	ENSGT00940000156280 #19	ENSGT00940000158304	ENSGT00390000020445 #20	ENSGT00940000163221 #21	ENSGT00940000155281 #22	ENSGT00940000158227 #24	ENSGT00800000125329 #23	ENSGT00940000162156 #25	ENSGT00950000183019.f.a #26	ENSGT00940000159945 #27	ENSGT00940000159301 #28	ENSGT00940000161049 #29	ENSGT00390000010557 #30	ENSGT00940000158945 #31	ENSGT01050000244857.B.a #32	ENSGT00630000089910 #33	ENSGT00940000154067.d #34	ENSGT00940000158974 #35	ENSGT00940000154365.a.a #36	ENSGT00940000159586 #37
Mouse	MODERN SPECIES	14	Gm7361 (ENSMUSG00000059645)	Gm10220 (ENSMUSG00000067698)	5031410I06Rik (ENSMUSG00000051940)	Gm10471 (ENSMUSG00000073116)	Gm7347 (ENSMUSG00000073117)	Speer4a (ENSMUSG00000073119)	Gm5862 (ENSMUSG00000067700)	Gm1979 (ENSMUSG00000091049)	Gm21698 (ENSMUSG00000096045)	Gm21680 (ENSMUSG00000106627)	Gm21671 (ENSMUSG00000095550)	Gm21663 (ENSMUSG00000104824)	Actr3b (ENSMUSG00000056367)	Xrcc2 (ENSMUSG00000028933) #20	Cct8l1 (ENSMUSG00000038044) #21	Kmt2c (ENSMUSG00000038056) #22	E130116L18Rik (ENSMUSG00000054116) #23	Galnt11 (ENSMUSG00000038072) #24	Galntl5 (ENSMUSG00000028938) #25	Prkag2 (ENSMUSG00000028944) #26	Rheb (ENSMUSG00000028945) #27	Crygn (ENSMUSG00000038135) #28	Wdr86 (ENSMUSG00000055235) #29	Nub1 (ENSMUSG00000028954) #30	Smarcd3 (ENSMUSG00000028949) #31	Chpf2 (ENSMUSG00000038181) #32	Abcf2 (ENSMUSG00000028953) #33	Iqca1l (ENSMUSG00000038199) #34	Asb10 (ENSMUSG00000038204) #35	Gbx1 (ENSMUSG00000067724) #36	Agap3 (ENSMUSG00000023353) #37
Mus_C	ANCESTRAL SPECIES	4	ENSGT00940000160059.a.a #8	ENSGT00940000153458.A #9	ENSGT00390000007809.b #10	ENSGT00390000003759 #11	ENSGT00940000159119.b #12	ENSGT00530000063891 #13	ENSGT00940000161119 #14	ENSGT00940000159935 #15	ENSGT00580000081600.c.a #16	ENSGT01010000222287.B.a.b.a #17	ENSGT00940000155757 #18	ENSGT00940000156280 #19	ENSGT00940000158304	ENSGT00390000020445 #20	ENSGT00940000163221 #21	ENSGT00940000155281 #22	ENSGT00940000158227 #24	ENSGT00800000125329 #23	ENSGT00940000162156 #25	ENSGT00950000183019.f.a #26	ENSGT00940000159945 #27	ENSGT00940000159301 #28	ENSGT00940000161049 #29	ENSGT00390000010557 #30	ENSGT00940000158945 #31	ENSGT01050000244857.B.a #32	ENSGT00630000089910 #33	ENSGT00940000154067.d #34	ENSGT00940000158974 #35	ENSGT00940000154365.a.a #36	ENSGT00940000159586 #37
Steppe mouse	MODERN SPECIES	34											Actr3b (ENSMSIG00000015155)	Xrcc2 (ENSMSIG00000015358) #20	ENSMSIG00000015382	Cct8l1 (ENSMSIG00000015391) #21	ENSMSIG00000015400	Kmt2c (ENSMSIG00000015422) #22	Galnt11 (ENSMSIG00000016201) #24	E130116L18Rik (ENSMSIG00000016270) #23	Prkag2 (ENSMSIG00000016296) #26	ENSMSIG00000016358	Rheb (ENSMSIG00000016368) #27	Crygn (ENSMSIG00000016389) #28	ENSMSIG00000016410 #29	ENSMSIG00000016414	Nub1 (ENSMSIG00000016418) #30	Smarcd3 (ENSMSIG00000016483) #31	Chpf2 (ENSMSIG00000016589) #32	Abcf2 (ENSMSIG00000016614) #33	Iqca1l (ENSMSIG00000016636) #34	ENSMSIG00000016686 #35	ENSMSIG00000016756 #37
spretus	MODERN SPECIES	14	Mnx1 (MGP_SPRETEiJ_G0028040) #8	MGP_SPRETEiJ_G0028039 #9	Lmbr1 (MGP_SPRETEiJ_G0028038) #10	MGP_SPRETEiJ_G0028037 #11	Shh (MGP_SPRETEiJ_G0028036) #12	Rbm33 (MGP_SPRETEiJ_G0028035) #13	MGP_SPRETEiJ_G0028034 #14	En2 (MGP_SPRETEiJ_G0028033) #15	Insig1 (MGP_SPRETEiJ_G0028032) #16	Htr5a (MGP_SPRETEiJ_G0028031) #17	Paxip1 (MGP_SPRETEiJ_G0028030) #18	Dpp6 (MGP_SPRETEiJ_G0028029) #19	Actr3b (MGP_SPRETEiJ_G0028028)	Xrcc2 (MGP_SPRETEiJ_G0028027) #20	Cct8l1 (MGP_SPRETEiJ_G0028026) #21	Kmt2c (MGP_SPRETEiJ_G0028025) #22	E130116L18Rik (MGP_SPRETEiJ_G0028024) #23	Galnt11 (MGP_SPRETEiJ_G0028023) #24	Galntl5 (MGP_SPRETEiJ_G0028022) #25	Prkag2 (MGP_SPRETEiJ_G0028021) #26	Rheb (MGP_SPRETEiJ_G0028020) #27	Crygn (MGP_SPRETEiJ_G0028019) #28	Wdr86 (MGP_SPRETEiJ_G0028018) #29	Nub1 (MGP_SPRETEiJ_G0028017) #30	Smarcd3 (MGP_SPRETEiJ_G0028016) #31	Chpf2 (MGP_SPRETEiJ_G0028015) #32	Abcf2 (MGP_SPRETEiJ_G0028014) #33	Iqca1l (MGP_SPRETEiJ_G0028013) #34	Asb10 (MGP_SPRETEiJ_G0028012) #35	Gbx1 (MGP_SPRETEiJ_G0028011) #36	Agap3 (MGP_SPRETEiJ_G0028010) #37