Murinae	ANCESTRAL SPECIES	31	ENSGT00940000160059.a.a	ENSGT00940000153458.A	ENSGT00390000007809.b	ENSGT00390000003759	ENSGT00940000159119.b	ENSGT00530000063891	ENSGT00940000161119	ENSGT00940000159935	ENSGT00580000081600.c.a	ENSGT01010000222287.B.a.b.a	ENSGT00940000155757	ENSGT00940000156280	ENSGT00940000158304 #17	ENSGT00390000020445 #18	ENSGT00940000163221 #20	ENSGT00940000155281 #22	ENSGT00940000158227 #23	ENSGT00940000162156	ENSGT00950000183019.f.a #25	ENSGT00940000159945 #27	ENSGT00940000159301 #28	ENSGT00940000161049 #29	ENSGT00390000010557 #31	ENSGT00940000158945 #32	ENSGT01050000244857.B.a #33	ENSGT00630000089910 #34	ENSGT00940000154067.d #35	ENSGT00940000158974 #36	ENSGT00940000154365.a.a	ENSGT00940000159586 #37	ENSGT00390000014069.a
Mus	ANCESTRAL SPECIES	24	ENSGT00940000160059.a.a	ENSGT00940000153458.A	ENSGT00390000007809.b	ENSGT00390000003759	ENSGT00940000159119.b	ENSGT00530000063891	ENSGT00940000161119	ENSGT00940000159935	ENSGT00580000081600.c.a	ENSGT01010000222287.B.a.b.a	ENSGT00940000155757	ENSGT00940000156280	ENSGT00940000158304 #17	ENSGT00390000020445 #18	ENSGT00940000163221 #20	ENSGT00940000155281 #22	ENSGT00940000158227 #23	ENSGT00800000125329 #24	ENSGT00940000162156	ENSGT00950000183019.f.a #25	ENSGT00940000159945 #27	ENSGT00940000159301 #28	ENSGT00940000161049 #29	ENSGT00390000010557 #31	ENSGT00940000158945 #32	ENSGT01050000244857.B.a #33	ENSGT00630000089910 #34	ENSGT00940000154067.d #35	ENSGT00940000158974 #36	ENSGT00940000154365.a.a	ENSGT00940000159586 #37
Mus_A	ANCESTRAL SPECIES	6	ENSGT00940000160059.a.a	ENSGT00940000153458.A	ENSGT00390000007809.b	ENSGT00390000003759	ENSGT00940000159119.b	ENSGT00530000063891	ENSGT00940000161119	ENSGT00940000159935	ENSGT00580000081600.c.a	ENSGT01010000222287.B.a.b.a	ENSGT00940000155757	ENSGT00940000156280	ENSGT00940000158304 #17	ENSGT00390000020445 #18	ENSGT00940000163221 #20	ENSGT00940000155281 #22	ENSGT00940000158227 #23	ENSGT00800000125329 #24	ENSGT00940000162156	ENSGT00950000183019.f.a #25	ENSGT00940000159945 #27	ENSGT00940000159301 #28	ENSGT00940000161049 #29	ENSGT00390000010557 #31	ENSGT00940000158945 #32	ENSGT01050000244857.B.a #33	ENSGT00630000089910 #34	ENSGT00940000154067.d #35	ENSGT00940000158974 #36	ENSGT00940000154365.a.a	ENSGT00940000159586 #37
Mus_B	ANCESTRAL SPECIES	4	ENSGT00940000160059.a.a	ENSGT00940000153458.A	ENSGT00390000007809.b	ENSGT00390000003759	ENSGT00940000159119.b	ENSGT00530000063891	ENSGT00940000161119	ENSGT00940000159935	ENSGT00580000081600.c.a	ENSGT01010000222287.B.a.b.a	ENSGT00940000155757	ENSGT00940000156280	ENSGT00940000158304 #17	ENSGT00390000020445 #18	ENSGT00940000163221 #20	ENSGT00940000155281 #22	ENSGT00940000158227 #23	ENSGT00800000125329 #24	ENSGT00940000162156	ENSGT00950000183019.f.a #25	ENSGT00940000159945 #27	ENSGT00940000159301 #28	ENSGT00940000161049 #29	ENSGT00390000010557 #31	ENSGT00940000158945 #32	ENSGT01050000244857.B.a #33	ENSGT00630000089910 #34	ENSGT00940000154067.d #35	ENSGT00940000158974 #36	ENSGT00940000154365.a.a	ENSGT00940000159586 #37
Mus_C	ANCESTRAL SPECIES	4	ENSGT00940000160059.a.a	ENSGT00940000153458.A	ENSGT00390000007809.b	ENSGT00390000003759	ENSGT00940000159119.b	ENSGT00530000063891	ENSGT00940000161119	ENSGT00940000159935	ENSGT00580000081600.c.a	ENSGT01010000222287.B.a.b.a	ENSGT00940000155757	ENSGT00940000156280	ENSGT00940000158304 #17	ENSGT00390000020445 #18	ENSGT00940000163221 #20	ENSGT00940000155281 #22	ENSGT00940000158227 #23	ENSGT00800000125329 #24	ENSGT00940000162156	ENSGT00950000183019.f.a #25	ENSGT00940000159945 #27	ENSGT00940000159301 #28	ENSGT00940000161049 #29	ENSGT00390000010557 #31	ENSGT00940000158945 #32	ENSGT01050000244857.B.a #33	ENSGT00630000089910 #34	ENSGT00940000154067.d #35	ENSGT00940000158974 #36	ENSGT00940000154365.a.a	ENSGT00940000159586 #37
Steppe mouse	MODERN SPECIES	34											Actr3b (ENSMSIG00000015155) #17	Xrcc2 (ENSMSIG00000015358) #18	ENSMSIG00000015382 #19	Cct8l1 (ENSMSIG00000015391) #20	ENSMSIG00000015400 #21	Kmt2c (ENSMSIG00000015422) #22	Galnt11 (ENSMSIG00000016201) #23	E130116L18Rik (ENSMSIG00000016270) #24	Prkag2 (ENSMSIG00000016296) #25	ENSMSIG00000016358 #26	Rheb (ENSMSIG00000016368) #27	Crygn (ENSMSIG00000016389) #28	ENSMSIG00000016410 #29	ENSMSIG00000016414 #30	Nub1 (ENSMSIG00000016418) #31	Smarcd3 (ENSMSIG00000016483) #32	Chpf2 (ENSMSIG00000016589) #33	Abcf2 (ENSMSIG00000016614) #34	Iqca1l (ENSMSIG00000016636) #35	ENSMSIG00000016686 #36	ENSMSIG00000016756 #37
spretus	MODERN SPECIES	14	Mnx1 (MGP_SPRETEiJ_G0028040)	MGP_SPRETEiJ_G0028039	Lmbr1 (MGP_SPRETEiJ_G0028038)	MGP_SPRETEiJ_G0028037	Shh (MGP_SPRETEiJ_G0028036)	Rbm33 (MGP_SPRETEiJ_G0028035)	MGP_SPRETEiJ_G0028034	En2 (MGP_SPRETEiJ_G0028033)	Insig1 (MGP_SPRETEiJ_G0028032)	Htr5a (MGP_SPRETEiJ_G0028031)	Paxip1 (MGP_SPRETEiJ_G0028030)	Dpp6 (MGP_SPRETEiJ_G0028029)	Actr3b (MGP_SPRETEiJ_G0028028) #17	Xrcc2 (MGP_SPRETEiJ_G0028027) #18	Cct8l1 (MGP_SPRETEiJ_G0028026) #20	Kmt2c (MGP_SPRETEiJ_G0028025) #22	E130116L18Rik (MGP_SPRETEiJ_G0028024) #24	Galnt11 (MGP_SPRETEiJ_G0028023) #23	Galntl5 (MGP_SPRETEiJ_G0028022)	Prkag2 (MGP_SPRETEiJ_G0028021) #25	Rheb (MGP_SPRETEiJ_G0028020) #27	Crygn (MGP_SPRETEiJ_G0028019) #28	Wdr86 (MGP_SPRETEiJ_G0028018) #29	Nub1 (MGP_SPRETEiJ_G0028017) #31	Smarcd3 (MGP_SPRETEiJ_G0028016) #32	Chpf2 (MGP_SPRETEiJ_G0028015) #33	Abcf2 (MGP_SPRETEiJ_G0028014) #34	Iqca1l (MGP_SPRETEiJ_G0028013) #35	Asb10 (MGP_SPRETEiJ_G0028012) #36	Gbx1 (MGP_SPRETEiJ_G0028011)	Agap3 (MGP_SPRETEiJ_G0028010) #37
Mouse	MODERN SPECIES	14	Gm7361 (ENSMUSG00000059645)	Gm10220 (ENSMUSG00000067698)	5031410I06Rik (ENSMUSG00000051940)	Gm10471 (ENSMUSG00000073116)	Gm7347 (ENSMUSG00000073117)	Speer4a (ENSMUSG00000073119)	Gm5862 (ENSMUSG00000067700)	Gm1979 (ENSMUSG00000091049)	Gm21698 (ENSMUSG00000096045)	Gm21680 (ENSMUSG00000106627)	Gm21671 (ENSMUSG00000095550)	Gm21663 (ENSMUSG00000104824)	Actr3b (ENSMUSG00000056367) #17	Xrcc2 (ENSMUSG00000028933) #18	Cct8l1 (ENSMUSG00000038044) #20	Kmt2c (ENSMUSG00000038056) #22	E130116L18Rik (ENSMUSG00000054116) #24	Galnt11 (ENSMUSG00000038072) #23	Galntl5 (ENSMUSG00000028938)	Prkag2 (ENSMUSG00000028944) #25	Rheb (ENSMUSG00000028945) #27	Crygn (ENSMUSG00000038135) #28	Wdr86 (ENSMUSG00000055235) #29	Nub1 (ENSMUSG00000028954) #31	Smarcd3 (ENSMUSG00000028949) #32	Chpf2 (ENSMUSG00000038181) #33	Abcf2 (ENSMUSG00000028953) #34	Iqca1l (ENSMUSG00000038199) #35	Asb10 (ENSMUSG00000038204) #36	Gbx1 (ENSMUSG00000067724)	Agap3 (ENSMUSG00000023353) #37
Ryukyu mouse	MODERN SPECIES	14	Ube3c (MGP_CAROLIEiJ_G0027045)	Mnx1 (MGP_CAROLIEiJ_G0027044)	MGP_CAROLIEiJ_G0027043	Lmbr1 (MGP_CAROLIEiJ_G0027042)	Rnf32 (MGP_CAROLIEiJ_G0027041)	Shh (MGP_CAROLIEiJ_G0027040)	Rbm33 (MGP_CAROLIEiJ_G0027039)	Cnpy1 (MGP_CAROLIEiJ_G0027038)	En2 (MGP_CAROLIEiJ_G0027037)	Insig1 (MGP_CAROLIEiJ_G0027036)	Htr5a (MGP_CAROLIEiJ_G0027035)	Paxip1 (MGP_CAROLIEiJ_G0027034)	Dpp6 (MGP_CAROLIEiJ_G0027033)	Xrcc2 (MGP_CAROLIEiJ_G0027031) #18	Cct8l1 (MGP_CAROLIEiJ_G0027030) #20	Kmt2c (MGP_CAROLIEiJ_G0027029) #22	E130116L18Rik (MGP_CAROLIEiJ_G0027028) #24	Galnt11 (MGP_CAROLIEiJ_G0027027) #23	Galntl5 (MGP_CAROLIEiJ_G0027026)	Prkag2 (MGP_CAROLIEiJ_G0027025) #25	Rheb (MGP_CAROLIEiJ_G0027024) #27	Crygn (MGP_CAROLIEiJ_G0027023) #28	MGP_CAROLIEiJ_G0027022 #29	Nub1 (MGP_CAROLIEiJ_G0027021) #31	Smarcd3 (MGP_CAROLIEiJ_G0027020) #32	Chpf2 (MGP_CAROLIEiJ_G0027019) #33	Abcf2 (MGP_CAROLIEiJ_G0027018) #34	Iqca1l (MGP_CAROLIEiJ_G0027017) #35	Asb10 (MGP_CAROLIEiJ_G0027016) #36	Gbx1 (MGP_CAROLIEiJ_G0027015)	Agap3 (MGP_CAROLIEiJ_G0027014) #37
Shrew mouse	MODERN SPECIES	11	Mnx1 (MGP_PahariEiJ_G0021817)	MGP_PahariEiJ_G0021816	Lmbr1 (MGP_PahariEiJ_G0021815)	Rnf32 (MGP_PahariEiJ_G0021814)	Shh (MGP_PahariEiJ_G0021813)	Rbm33 (MGP_PahariEiJ_G0021812)	MGP_PahariEiJ_G0021811	En2 (MGP_PahariEiJ_G0021810)	Insig1 (MGP_PahariEiJ_G0021809)	Htr5a (MGP_PahariEiJ_G0021808)	Paxip1 (MGP_PahariEiJ_G0021807)	Dpp6 (MGP_PahariEiJ_G0021806)	MGP_PahariEiJ_G0021805 #17	MGP_PahariEiJ_G0021804	Cct8l1 (MGP_PahariEiJ_G0021803) #20	Kmt2c (MGP_PahariEiJ_G0021802) #22	MGP_PahariEiJ_G0021801 #24	Galnt11 (MGP_PahariEiJ_G0021800) #23	Galntl5 (MGP_PahariEiJ_G0021799)	Prkag2 (MGP_PahariEiJ_G0021798) #25	Rheb (MGP_PahariEiJ_G0021797) #27	Crygn (MGP_PahariEiJ_G0021796) #28	Wdr86 (MGP_PahariEiJ_G0021795) #29	Nub1 (MGP_PahariEiJ_G0021794) #31	Smarcd3 (MGP_PahariEiJ_G0021793) #32	Chpf2 (MGP_PahariEiJ_G0021792) #33	Abcf2 (MGP_PahariEiJ_G0021791) #34	Iqca1l (MGP_PahariEiJ_G0021790) #35	Asb10 (MGP_PahariEiJ_G0021789) #36	Gbx1 (MGP_PahariEiJ_G0021788)	MGP_PahariEiJ_G0021787 #37
Rat	MODERN SPECIES	14	Lmbr1 (ENSRNOG00000059589)	Rnf32 (ENSRNOG00000005691)	Shh (ENSRNOG00000006120)	Rbm33 (ENSRNOG00000006718)	Cnpy1 (ENSRNOG00000028311)	En2 (ENSRNOG00000006846)	Insig1 (ENSRNOG00000006859)	Htr5a (ENSRNOG00000007066)	Paxip1 (ENSRNOG00000007131)	Dpp6 (ENSRNOG00000030547)	Actr3b (ENSRNOG00000031855) #17	Xrcc2 (ENSRNOG00000007493) #18	AABR07059161.1 (ENSRNOG00000051942) #19	Rpl10a-ps9 (ENSRNOG00000047067)	Cct8l2 (ENSRNOG00000047114) #20	Kmt2c (ENSRNOG00000061080) #22	Galnt11 (ENSRNOG00000008117) #23	Galntl5 (ENSRNOG00000040301)	LOC120102456 (ENSRNOG00000062492)	Prkag2 (ENSRNOG00000009085) #25	Rheb (ENSRNOG00000050578) #27	Crygn (ENSRNOG00000009226) #28	Wdr86 (ENSRNOG00000025735) #29	Nub1 (ENSRNOG00000009282) #31	AC099360.1 (ENSRNOG00000025214)	Smarcd3 (ENSRNOG00000010077) #32	Chpf2 (ENSRNOG00000010466) #33	Abcf2 (ENSRNOG00000010609) #34	Iqca1l (ENSRNOG00000011092) #35	Asb10 (ENSRNOG00000024885) #36	Gbx1 (ENSRNOG00000013369)