Euarchontoglires_A	ANCESTRAL SPECIES	17	ENSGT00940000153458.A #8	ENSGT00390000007809.b #9	ENSGT00390000003759 #10	ENSGT00940000159119.b #11	ENSGT00530000063891 #12	ENSGT00940000161119 #13	ENSGT00940000159935 #14	ENSGT00580000081600.c.a #15	ENSGT01010000222287.B.a.b.a #16	ENSGT00940000155757 #17	ENSGT00940000156280 #18	ENSGT00940000158304 #19	ENSGT00390000020445 #20	ENSGT00940000163221 #21	ENSGT00940000166821.a	ENSGT00940000155281 #22	ENSGT00940000158227 #23	ENSGT00940000162156 #24	ENSGT00950000183019.e ##26	ENSGT00950000183019.f.a #26	ENSGT00940000159945 #27	ENSGT00940000159301 #28	ENSGT00940000161049 #29	ENSGT00390000010557 #30	ENSGT00940000158945 #31	ENSGT01050000244857.B.a #32	ENSGT00630000089910 #33	ENSGT01100000263569.a.a	ENSGT00940000154067.d #34	ENSGT00940000158974 #35	ENSGT00940000154365.a.a #36
Glires	ANCESTRAL SPECIES	18	ENSGT00940000153458.A #8	ENSGT00390000007809.b #9	ENSGT00390000003759 #10	ENSGT00940000159119.b #11	ENSGT00530000063891 #12	ENSGT00940000161119 #13	ENSGT00940000159935 #14	ENSGT00580000081600.c.a #15	ENSGT01010000222287.B.a.b.a #16	ENSGT00940000155757 #17	ENSGT00940000156280 #18	ENSGT00940000158304 #19	ENSGT00390000020445 #20	ENSGT00940000163221 #21	ENSGT00940000166821.a	ENSGT00940000155281 #22	ENSGT00940000158227 #23	ENSGT00940000162156 #24	ENSGT00950000183019.e ##26	ENSGT00950000183019.f.a #26	ENSGT00940000159945 #27	ENSGT00940000159301 #28	ENSGT00940000161049 #29	ENSGT00390000010557 #30	ENSGT00940000158945 #31	ENSGT01050000244857.B.a #32	ENSGT00630000089910 #33	ENSGT01100000263569.a.a	ENSGT00940000154067.d #34	ENSGT00940000158974 #35	ENSGT00940000154365.a.a #36
Rodentia	ANCESTRAL SPECIES	12	ENSGT00940000153458.A #8	ENSGT00390000007809.b #9	ENSGT00390000003759 #10	ENSGT00940000159119.b #11	ENSGT00530000063891 #12	ENSGT00940000161119 #13	ENSGT00940000159935 #14	ENSGT00580000081600.c.a #15	ENSGT01010000222287.B.a.b.a #16	ENSGT00940000155757 #17	ENSGT00940000156280 #18	ENSGT00940000158304 #19	ENSGT00390000020445 #20	ENSGT00940000163221 #21	ENSGT00940000166821.a	ENSGT00940000155281 #22	ENSGT00940000158227 #23	ENSGT00940000162156 #24	ENSGT00950000183019.e ##26	ENSGT00950000183019.f.a #26	ENSGT00940000159945 #27	ENSGT00940000159301 #28	ENSGT00940000161049 #29	ENSGT00390000010557 #30	ENSGT00940000158945 #31	ENSGT01050000244857.B.a #32	ENSGT00630000089910 #33	ENSGT01100000263569.a.a	ENSGT00940000154067.d #34	ENSGT00940000158974 #35	ENSGT00940000154365.a.a #36
Rodentia_A	ANCESTRAL SPECIES	12	ENSGT00940000160059.a.a #7	ENSGT00940000153458.A #8	ENSGT00390000007809.b #9	ENSGT00390000003759 #10	ENSGT00940000159119.b #11	ENSGT00530000063891 #12	ENSGT00940000161119 #13	ENSGT00940000159935 #14	ENSGT00580000081600.c.a #15	ENSGT01010000222287.B.a.b.a #16	ENSGT00940000155757 #17	ENSGT00940000156280 #18	ENSGT00940000158304 #19	ENSGT00390000020445 #20	ENSGT00940000163221 #21	ENSGT00940000155281 #22	ENSGT00940000158227 #23	ENSGT00940000162156 #24	ENSGT00950000183019.e ##26	ENSGT00950000183019.f.a #26	ENSGT00940000159945 #27	ENSGT00940000159301 #28	ENSGT00940000161049 #29	ENSGT00390000010557 #30	ENSGT00940000158945 #31	ENSGT01050000244857.B.a #32	ENSGT00630000089910 #33	ENSGT01100000263569.a.a	ENSGT00940000154067.d #34	ENSGT00940000158974 #35	ENSGT00940000154365.a.a #36
Hystricomorpha	ANCESTRAL SPECIES	35	ENSGT00940000160059.a.a #7	ENSGT00940000153458.A #8	ENSGT00390000007809.b #9	ENSGT00390000003759 #10	ENSGT00940000159119.b #11	ENSGT00530000063891 #12	ENSGT00940000161119 #13	ENSGT00940000159935 #14	ENSGT00580000081600.c.a #15	ENSGT01010000222287.B.a.b.a #16	ENSGT00940000155757 #17	ENSGT00940000156280 #18	ENSGT00940000158304 #19	ENSGT00390000020445 #20	ENSGT00940000163221 #21	ENSGT00940000155281 #22	ENSGT00940000158227 #23	ENSGT00940000162156 #24	ENSGT00950000183019.e ##26	ENSGT00950000183019.f.a #26	ENSGT00940000159945 #27	ENSGT00940000159301 #28	ENSGT00940000161049 #29	ENSGT00390000010557 #30	ENSGT00940000158945 #31	ENSGT01050000244857.B.a #32	ENSGT00630000089910 #33	ENSGT00940000154067.d #34	ENSGT00940000158974 #35	ENSGT00940000154365.a.a #36	ENSGT00940000159586 #37
Hystricomorpha_a	ANCESTRAL SPECIES	40	ENSGT00940000160059.a.a #7	ENSGT00940000153458.A #8	ENSGT00390000007809.b #9	ENSGT00390000003759 #10	ENSGT00940000159119.b #11	ENSGT00530000063891 #12	ENSGT00940000161119 #13	ENSGT00940000159935 #14	ENSGT00580000081600.c.a #15	ENSGT01010000222287.B.a.b.a #16	ENSGT00940000155757 #17	ENSGT00940000156280 #18	ENSGT00940000158304 #19	ENSGT00390000020445 #20	ENSGT00940000163221 #21	ENSGT00940000155281 #22	ENSGT00940000158227 #23	ENSGT00940000162156 #24	ENSGT00950000183019.e ##26	ENSGT00950000183019.f.a #26	ENSGT00940000159945 #27	ENSGT00940000159301 #28	ENSGT00940000161049 #29	ENSGT00390000010557 #30	ENSGT00940000158945 #31	ENSGT01050000244857.B.a #32	ENSGT00630000089910 #33	ENSGT00940000154067.d #34	ENSGT00940000158974 #35	ENSGT00940000154365.a.a #36	ENSGT00940000159586 #37
Guinea pig	MODERN SPECIES	32	ENSCPOG00000022207 #7	NOM1 (ENSCPOG00000025538) #8	LMBR1 (ENSCPOG00000003305) #9	RNF32 (ENSCPOG00000012026) #10	SHH (ENSCPOG00000023638) #11	RBM33 (ENSCPOG00000011852) #12	ENSCPOG00000009846 #13	EN2 (ENSCPOG00000024572) #14	INSIG1 (ENSCPOG00000014739) #15	HTR5A (ENSCPOG00000007970) #16	PAXIP1 (ENSCPOG00000001303) #17	DPP6 (ENSCPOG00000003511) #18	ENSCPOG00000003695 #19	XRCC2 (ENSCPOG00000012263) #20	CCT8L2 (ENSCPOG00000020546) #21	KMT2C (ENSCPOG00000001857) #22	GALNT11 (ENSCPOG00000005174) #23	GALNTL5 (ENSCPOG00000005168) #24	ENSCPOG00000022472 #25	PRKAG2 (ENSCPOG00000015691) #26	RHEB (ENSCPOG00000031743) #27	Crygn (ENSCPOG00000005218) #28	WDR86 (ENSCPOG00000026626) #29	NUB1 (ENSCPOG00000012070) #30	SMARCD3 (ENSCPOG00000020971) #31	CHPF2 (ENSCPOG00000033035) #32	ABCF2 (ENSCPOG00000008379) #33	IQCA1L (ENSCPOG00000006528) #34	ASB10 (ENSCPOG00000007315) #35	GBX1 (ENSCPOG00000011349) #36	AGAP3 (ENSCPOG00000004084) #37
Hystricomorpha_b	ANCESTRAL SPECIES	40	ENSGT00940000160059.a.a #7	ENSGT00940000153458.A #8	ENSGT00390000007809.b #9	ENSGT00390000003759 #10	ENSGT00940000159119.b #11	ENSGT00530000063891 #12	ENSGT00940000161119 #13	ENSGT00940000159935 #14	ENSGT00580000081600.c.a #15	ENSGT01010000222287.B.a.b.a #16	ENSGT00940000155757 #17	ENSGT00940000156280 #18	ENSGT00940000158304 #19	ENSGT00390000020445 #20	ENSGT00940000163221 #21	ENSGT00940000155281 #22	ENSGT00940000158227 #23	ENSGT00940000162156 #24	ENSGT00950000183019.e ##26	ENSGT00950000183019.f.a #26	ENSGT00940000159945 #27	ENSGT00940000159301 #28	ENSGT00940000161049 #29	ENSGT00390000010557 #30	ENSGT00940000158945 #31	ENSGT01050000244857.B.a #32	ENSGT00630000089910 #33	ENSGT00940000154067.d #34	ENSGT00940000158974 #35	ENSGT00940000154365.a.a #36	ENSGT00940000159586 #37
Long-tailed chinchilla	MODERN SPECIES	198		ENSCLAG00000001407 #9	RNF32 (ENSCLAG00000001359) #10	ENSCLAG00000001349 #11	RBM33 (ENSCLAG00000001190) #12	ENSCLAG00000001129 #13	ENSCLAG00000001118 #14	INSIG1 (ENSCLAG00000001112) #15	HTR5A (ENSCLAG00000001100) #16	PAXIP1 (ENSCLAG00000000995) #17	ENSCLAG00000002985	DPP6 (ENSCLAG00000002591) #18	ENSCLAG00000002298 #19	XRCC2 (ENSCLAG00000002275) #20	CCT8L2 (ENSCLAG00000002244) #21	KMT2C (ENSCLAG00000001864) #22	GALNT11 (ENSCLAG00000001492) #23	GALNTL5 (ENSCLAG00000001429) #24	PRKAG2 (ENSCLAG00000001384) #26	RHEB (ENSCLAG00000001338) #27	CRYGN (ENSCLAG00000001204) #28	WDR86 (ENSCLAG00000001192) #29	NUB1 (ENSCLAG00000001153) #30	SMARCD3 (ENSCLAG00000001124) #31	CHPF2 (ENSCLAG00000001087) #32	ABCF2 (ENSCLAG00000001001) #33	IQCA1L (ENSCLAG00000009596) #34	ASB10 (ENSCLAG00000009063) #35	AGAP3 (ENSCLAG00000008354) #37	TMUB1 (ENSCLAG00000008132)	FASTK (ENSCLAG00000004011)
Degu	MODERN SPECIES	68	ENSODEG00000010749 #9	RNF32 (ENSODEG00000010017) #10	ENSODEG00000019851	SHH (ENSODEG00000010106) #11	ENSODEG00000009918 #12	ENSODEG00000010830 #12	ENSODEG00000010168 #13	EN2 (ENSODEG00000010942) #14	INSIG1 (ENSODEG00000010315) #15	HTR5A (ENSODEG00000014269) #16	PAXIP1 (ENSODEG00000011288) #17	DPP6 (ENSODEG00000011104) #18	ENSODEG00000009981 #19	ENSODEG00000009802	ENSODEG00000010322	ENSODEG00000010160 #22	GALNT11 (ENSODEG00000010700) #23	GALNTL5 (ENSODEG00000010884) #24	ENSODEG00000010230 ##26	ENSODEG00000010576 #26	RHEB (ENSODEG00000009963) #27	CRYGN (ENSODEG00000010431) #28	WDR86 (ENSODEG00000011320) #29	NUB1 (ENSODEG00000013029) #30	ENSODEG00000019677	GBX1 (ENSODEG00000010838) #36	SMARCD3 (ENSODEG00000009877) #31	CHPF2 (ENSODEG00000013871) #32	ENSODEG00000011747 #33	IQCA1L (ENSODEG00000011267) #34	ASB10 (ENSODEG00000010658) #35
Naked mole-rat female	MODERN SPECIES	14	UBE3C (ENSHGLG00000008254)	DNAJB6 (ENSHGLG00000018860)	ENSHGLG00000050124	ENSHGLG00000050437	ENSHGLG00000036053	NCAPG2 (ENSHGLG00000005951)	ESYT2 (ENSHGLG00000004302)	DYNC2I1 (ENSHGLG00000006228)	ENSHGLG00000019103	ENSHGLG00000042205 #18	ENSHGLG00000018716	ENSHGLG00000003449 #19	XRCC2 (ENSHGLG00000035399) #20	ENSHGLG00000044948	ENSHGLG00000036262	ENSHGLG00000018334 #22	GALNT11 (ENSHGLG00000010004) #23	GALNTL5 (ENSHGLG00000003942) #24	ENSHGLG00000038611 ##26	RHEB (ENSHGLG00000042643) #27	ENSHGLG00000034995 #30	SMARCD3 (ENSHGLG00000003237) #31	ENSHGLG00000041150	ENSHGLG00000038267 #32	ABCF2 (ENSHGLG00000005286) #33	ASB10 (ENSHGLG00000005594) #35	GBX1 (ENSHGLG00000042035) #36	ENSHGLG00000007176 #37	ENSHGLG00000036286 #37	CDK5 (ENSHGLG00000006490)	ASIC3 (ENSHGLG00000009218)
Sciuridae	ANCESTRAL SPECIES	7	ENSGT00940000160059.a.a #7	ENSGT00940000153458.A #8	ENSGT00390000007809.b #9	ENSGT00390000003759 #10	ENSGT00940000159119.b #11	ENSGT00530000063891 #12	ENSGT00940000161119 #13	ENSGT00940000159935 #14	ENSGT00580000081600.c.a #15	ENSGT01010000222287.B.a.b.a #16	ENSGT00940000155757 #17	ENSGT00940000156280 #18	ENSGT00940000158304 #19	ENSGT00390000020445 #20	ENSGT00940000163221 #21	ENSGT00940000155281 #22	ENSGT00940000158227.e #23	ENSGT00940000162156 #24	ENSGT00950000183019.f.a #26	ENSGT00940000159945 #27	ENSGT00940000159301 #28	ENSGT00940000161049 #29	ENSGT00390000010557 #30	ENSGT00940000158945 #31	ENSGT01050000244857.B.a #32	ENSGT00630000089910 #33	ENSGT01100000263569.a.a	ENSGT00940000154067.d #34	ENSGT00940000158974 #35	ENSGT00940000154365.a.a #36	ENSGT00940000159586 #37
Marmotini	ANCESTRAL SPECIES	32	ENSGT00940000160059.a.a #7	ENSGT00940000153458.A #8	ENSGT00390000007809.b #9	ENSGT00390000003759 #10	ENSGT00940000159119.b #11	ENSGT00530000063891 #12	ENSGT00940000161119 #13	ENSGT00940000159935 #14	ENSGT00580000081600.c.a #15	ENSGT01010000222287.B.a.b.a #16	ENSGT00940000155757 #17	ENSGT00940000156280 #18	ENSGT00940000158304 #19	ENSGT00390000020445 #20	ENSGT00940000163221 #21	ENSGT00940000155281 #22	ENSGT00940000158227.e #23	ENSGT00940000162156 #24	ENSGT00950000183019.f.a #26	ENSGT00940000159945 #27	ENSGT00940000159301 #28	ENSGT00940000161049 #29	ENSGT00390000010557 #30	ENSGT00940000158945 #31	ENSGT01050000244857.B.a #32	ENSGT00630000089910 #33	ENSGT01100000263569.a.a	ENSGT00940000154067.d #34	ENSGT00940000158974 #35	ENSGT00940000154365.a.a #36	ENSGT00940000159586 #37
Marmotini_b	ANCESTRAL SPECIES	45					ENSGT00940000159119.b #11	ENSGT00530000063891 #12	ENSGT00940000161119 #13	ENSGT00940000159935 #14	ENSGT00580000081600.c.a #15	ENSGT01010000222287.B.a.b.a #16	ENSGT00940000155757 #17	ENSGT00940000156280 #18	ENSGT00940000158304 #19	ENSGT00390000020445 #20	ENSGT00940000163221 #21	ENSGT00940000155281 #22	ENSGT00940000158227.e #23	ENSGT00940000162156 #24	ENSGT00950000183019.f.a #26	ENSGT00940000159945 #27	ENSGT00940000159301 #28	ENSGT00940000161049 #29	ENSGT00390000010557 #30	ENSGT00940000158945 #31	ENSGT01050000244857.B.a #32	ENSGT00630000089910 #33	ENSGT00940000154067.d #34	ENSGT00940000158974 #35	ENSGT00940000154365.a.a #36	ENSGT00940000159586 #37	ENSGT00390000014069.a
Arctic ground squirrel	MODERN SPECIES	599															CCT8L2 (ENSUPAG00010011886) #21	KMT2C (ENSUPAG00010011890) #22	ENSUPAG00010012026 #23	GALNTL5 (ENSUPAG00010012045) #24	PRKAG2 (ENSUPAG00010012086) #26	RHEB (ENSUPAG00010012118) #27
Squirrel	MODERN SPECIES	127					SHH (ENSSTOG00000021031) #11	RBM33 (ENSSTOG00000023973) #12	ENSSTOG00000033276	EN2 (ENSSTOG00000025941) #14	INSIG1 (ENSSTOG00000024857) #15	HTR5A (ENSSTOG00000014566) #16	PAXIP1 (ENSSTOG00000021376) #17	DPP6 (ENSSTOG00000003823) #18	ENSSTOG00000000969 #19	XRCC2 (ENSSTOG00000002470) #20	CCT8L2 (ENSSTOG00000025875) #21	KMT2C (ENSSTOG00000013723) #22	GALNT11 (ENSSTOG00000005132) #23	GALNTL5 (ENSSTOG00000012361) #24	PRKAG2 (ENSSTOG00000021632) #26	RHEB (ENSSTOG00000004544) #27	CRYGN (ENSSTOG00000004537) #28	WDR86 (ENSSTOG00000028782) #29	NUB1 (ENSSTOG00000008307) #30	SMARCD3 (ENSSTOG00000009660) #31	CHPF2 (ENSSTOG00000009651) #32	ABCF2 (ENSSTOG00000009626) #33	IQCA1L (ENSSTOG00000009621) #34	ASB10 (ENSSTOG00000020651) #35	GBX1 (ENSSTOG00000027989) #36	AGAP3 (ENSSTOG00000026450) #37	TMUB1 (ENSSTOG00000016078)
Alpin marmot	MODERN SPECIES	35												DPP6 (ENSMMMG00000004485) #18	ENSMMMG00000004817 #19	XRCC2 (ENSMMMG00000004843) #20	CCT8L2 (ENSMMMG00000004866) #21	KMT2C (ENSMMMG00000004874) #22	GALNT11 (ENSMMMG00000005267) #23	GALNTL5 (ENSMMMG00000005286) #24	PRKAG2 (ENSMMMG00000005353) #26	RHEB (ENSMMMG00000005420) #27	CRYGN (ENSMMMG00000005436) #28	WDR86 (ENSMMMG00000005473) #29	NUB1 (ENSMMMG00000005485) #30	SMARCD3 (ENSMMMG00000005566) #31	CHPF2 (ENSMMMG00000005585) #32	ABCF2 (ENSMMMG00000005590) #33	H2BK1 (ENSMMMG00000005826)	IQCA1L (ENSMMMG00000005830) #34	ASB10 (ENSMMMG00000005864) #35	GBX1 (ENSMMMG00000005894) #36	AGAP3 (ENSMMMG00000005900) #37
Eurasian red squirrel	MODERN SPECIES	17	LMBR1 (ENSSVLG00005005244) #9	RNF32 (ENSSVLG00005005337) #10	ENSSVLG00005005359	SHH (ENSSVLG00005005393) #11	ENSSVLG00005005430 #12	ENSSVLG00005005471 #12	ENSSVLG00005005541 #13	EN2 (ENSSVLG00005005587) #14	INSIG1 (ENSSVLG00005005612) #15	HTR5A (ENSSVLG00005005652) #16	PAXIP1 (ENSSVLG00005005680) #17	DPP6 (ENSSVLG00005005798) #18	ENSSVLG00005006154 #19	XRCC2 (ENSSVLG00005006214) #20	CCT8L2 (ENSSVLG00005006281) #21	KMT2C (ENSSVLG00005006324) #22	ENSSVLG00005006622 #23	GALNTL5 (ENSSVLG00005006658) #24	PRKAG2 (ENSSVLG00005006761) #26	RHEB (ENSSVLG00005006988) #27	CRYGN (ENSSVLG00005007028) #28	WDR86 (ENSSVLG00005007063) #29	NUB1 (ENSSVLG00005007078) #30	SMARCD3 (ENSSVLG00005007107) #31	CHPF2 (ENSSVLG00005007152) #32	ENSSVLG00005007181 #33	H2BK1 (ENSSVLG00005007235)	IQCA1L (ENSSVLG00005007273) #34	ASB10 (ENSSVLG00005007373) #35	GBX1 (ENSSVLG00005007435) #36	AGAP3 (ENSSVLG00005007560) #37
Rodentia_B	ANCESTRAL SPECIES	9	ENSGT00940000153458.A #8	ENSGT00390000007809.b #9	ENSGT00390000003759 #10	ENSGT00940000159119.b #11	ENSGT00530000063891 #12	ENSGT00940000161119 #13	ENSGT00940000159935 #14	ENSGT00580000081600.c.a #15	ENSGT01010000222287.B.a.b.a #16	ENSGT00940000155757 #17	ENSGT00940000156280 #18	ENSGT00940000158304 #19	ENSGT00390000020445 #20	ENSGT00940000163221 #21	ENSGT00940000166821.a	ENSGT00940000155281 #22	ENSGT00940000158227 #23	ENSGT00940000162156 #24	ENSGT00950000183019.e ##26	ENSGT00950000183019.f.a #26	ENSGT00940000159945 #27	ENSGT00940000159301 #28	ENSGT00940000161049 #29	ENSGT00390000010557 #30	ENSGT00940000158945 #31	ENSGT01050000244857.B.a #32	ENSGT00630000089910 #33	ENSGT00940000154067.d #34	ENSGT00940000158974 #35	ENSGT00940000154365.a.a #36	ENSGT00940000159586 #37
Myomorpha	ANCESTRAL SPECIES	8	ENSGT00940000153458.A #8	ENSGT00390000007809.b #9	ENSGT00390000003759 #10	ENSGT00940000159119.b #11	ENSGT00530000063891 #12	ENSGT00940000161119 #13	ENSGT00940000159935 #14	ENSGT00580000081600.c.a #15	ENSGT01010000222287.B.a.b.a #16	ENSGT00940000155757 #17	ENSGT00940000156280 #18	ENSGT00940000158304 #19	ENSGT00390000020445 #20	ENSGT00940000163221 #21	ENSGT00940000166821.a	ENSGT00940000155281 #22	ENSGT00940000158227 #23	ENSGT00940000162156 #24	ENSGT00950000183019.e ##26	ENSGT00950000183019.f.a #26	ENSGT00940000159945 #27	ENSGT00940000159301 #28	ENSGT00940000161049 #29	ENSGT00390000010557 #30	ENSGT00940000158945 #31	ENSGT01050000244857.B.a #32	ENSGT00630000089910 #33	ENSGT00940000154067.d #34	ENSGT00940000158974 #35	ENSGT00940000154365.a.a #36	ENSGT00940000159586 #37
Muroidea	ANCESTRAL SPECIES	8	ENSGT00940000153458.A #8	ENSGT00390000007809.b #9	ENSGT00390000003759 #10	ENSGT00940000159119.b #11	ENSGT00530000063891 #12	ENSGT00940000161119 #13	ENSGT00940000159935 #14	ENSGT00580000081600.c.a #15	ENSGT01010000222287.B.a.b.a #16	ENSGT00940000155757 #17	ENSGT00940000156280 #18	ENSGT00940000158304 #19	ENSGT00390000020445 #20	ENSGT00940000163221 #21	ENSGT00940000166821.a	ENSGT00940000155281 #22	ENSGT00940000158227 #23	ENSGT00940000162156 #24	ENSGT00950000183019.f.a #26	ENSGT00940000159945 #27	ENSGT00940000159301 #28	ENSGT00940000161049 #29	ENSGT00390000010557 #30	ENSGT00940000158945 #31	ENSGT01050000244857.B.a #32	ENSGT00630000089910 #33	ENSGT00940000154067.d #34	ENSGT00940000158974 #35	ENSGT00940000154365.a.a #36	ENSGT00940000159586 #37	ENSGT00390000014069.a
Muroidea_A	ANCESTRAL SPECIES	4	ENSGT00940000160059.a.a #7	ENSGT00940000153458.A #8	ENSGT00390000007809.b #9	ENSGT00390000003759 #10	ENSGT00940000159119.b #11	ENSGT00530000063891 #12	ENSGT00940000161119 #13	ENSGT00940000159935 #14	ENSGT00580000081600.c.a #15	ENSGT01010000222287.B.a.b.a #16	ENSGT00940000155757 #17	ENSGT00940000156280 #18	ENSGT00940000158304 #19	ENSGT00390000020445 #20	ENSGT00940000163221 #21	ENSGT00940000155281 #22	ENSGT00940000158227 #23	ENSGT00940000162156 #24	ENSGT00950000183019.f.a #26	ENSGT00940000159945 #27	ENSGT00940000159301 #28	ENSGT00940000161049 #29	ENSGT00390000010557 #30	ENSGT00940000158945 #31	ENSGT01050000244857.B.a #32	ENSGT00630000089910 #33	ENSGT00940000154067.d #34	ENSGT00940000158974 #35	ENSGT00940000154365.a.a #36	ENSGT00940000159586 #37	ENSGT00390000014069.a
Cricetidae	ANCESTRAL SPECIES	3	ENSGT00390000007809.b #9	ENSGT00390000003759 #10	ENSGT00940000159119.b #11	ENSGT00530000063891 #12	ENSGT00940000161119 #13	ENSGT00940000159935 #14	ENSGT00580000081600.c.a #15	ENSGT01010000222287.B.a.b.a #16	ENSGT00940000155757 #17	ENSGT00940000156280 #18	ENSGT00940000158304 #19	ENSGT00390000020445 #20	ENSGT00940000163221 #21	ENSGT00940000166831	ENSGT00940000166821.a	ENSGT00940000155281 #22	ENSGT00940000158227 #23	ENSGT00940000162156 #24	ENSGT00950000183019.f.a #26	ENSGT00940000159945 #27	ENSGT00940000159301 #28	ENSGT00940000161049 #29	ENSGT00390000010557 #30	ENSGT00940000158945 #31	ENSGT01050000244857.B.a #32	ENSGT00630000089910 #33	ENSGT00940000154067.d #34	ENSGT00940000158974 #35	ENSGT00940000154365.a.a #36	ENSGT00940000159586 #37	ENSGT00390000014069.a
Cricetinae	ANCESTRAL SPECIES	8	ENSGT00390000007809.b #9	ENSGT00390000003759 #10	ENSGT00940000159119.b #11	ENSGT00530000063891 #12	ENSGT00940000161119 #13	ENSGT00940000159935 #14	ENSGT00580000081600.c.a.i #15	ENSGT01010000222287.B.a.b.a #16	ENSGT00940000155757 #17	ENSGT00940000156280 #18	ENSGT00940000158304 #19	ENSGT00390000020445 #20	ENSGT00940000163221 #21	ENSGT00940000166831	ENSGT00940000166821.a	ENSGT00940000155281 #22	ENSGT00940000158227 #23	ENSGT00940000162156 #24	ENSGT00950000183019.f.a #26	ENSGT00940000159945 #27	ENSGT00940000159301 #28	ENSGT00940000161049 #29	ENSGT00390000010557 #30	ENSGT00940000158945 #31	ENSGT01050000244857.B.a #32	ENSGT00630000089910 #33	ENSGT00940000154067.d #34	ENSGT00940000158974 #35	ENSGT00940000154365.a.a #36	ENSGT00940000159586 #37	ENSGT00390000014069.a
Golden Hamster	MODERN SPECIES	781	Nom1 (ENSMAUG00000017988) #8	ENSMAUG00000014867	Lmbr1 (ENSMAUG00000015566) #9	Rnf32 (ENSMAUG00000000042) #10	Shh (ENSMAUG00000016493) #11	Rbm33 (ENSMAUG00000017332) #12	ENSMAUG00000000075 #13	En2 (ENSMAUG00000018311) #14	Insig1 (ENSMAUG00000000814) #15	Htr5a (ENSMAUG00000001772) #16	Paxip1 (ENSMAUG00000003325) #17	Dpp6 (ENSMAUG00000007340) #18	Actr3b (ENSMAUG00000009519) #19	ENSMAUG00000012568	ENSMAUG00000009446	ENSMAUG00000012286 #22	Galnt11 (ENSMAUG00000014251) #23
Chinese hamster chok1gshd	MODERN SPECIES	212	Lmbr1 (ENSCGRG00001017749) #9	ENSCGRG00001013740	Rnf32 (ENSCGRG00001006621) #10	Shh (ENSCGRG00001016950) #11	Rbm33 (ENSCGRG00001021677) #12	Cnpy1 (ENSCGRG00001022362) #13	En2 (ENSCGRG00001019240) #14	Insig1 (ENSCGRG00001012058) #15	Htr5a (ENSCGRG00001010326) #16	Paxip1 (ENSCGRG00001019392) #17	Dpp6 (ENSCGRG00001021197) #18	ENSCGRG00001005137	Actr3b (ENSCGRG00001019328) #19	Xrcc2 (ENSCGRG00001014306) #20	Cct8l1 (ENSCGRG00001016412) #21	Kmt2c (ENSCGRG00001003349) #22	E130116L18Rik (ENSCGRG00001017528)	Galnt11 (ENSCGRG00001013302) #23	Galntl5 (ENSCGRG00001010298) #24	Prkag2 (ENSCGRG00001022044) #26	Rheb (ENSCGRG00001021366) #27	Crygn (ENSCGRG00001018926) #28	Wdr86 (ENSCGRG00001018301) #29	Nub1 (ENSCGRG00001017536) #30	Smarcd3 (ENSCGRG00001012201) #31	Chpf2 (ENSCGRG00001011550) #32	Abcf2 (ENSCGRG00001008869) #33	Iqca1l (ENSCGRG00001021354) #34	Asb10 (ENSCGRG00001020425) #35	Gbx1 (ENSCGRG00001018832) #36	Agap3 (ENSCGRG00001011337) #37
Cricetidae_B	ANCESTRAL SPECIES	10	ENSGT00390000007809.b #9	ENSGT00390000003759 #10	ENSGT00940000159119.b #11	ENSGT00530000063891 #12	ENSGT00940000161119 #13	ENSGT00940000159935 #14	ENSGT00580000081600.c.a #15	ENSGT01010000222287.B.a.b.a #16	ENSGT00940000155757 #17	ENSGT00940000156280 #18	ENSGT00940000158304 #19	ENSGT00390000020445 #20	ENSGT00940000163221 #21	ENSGT00940000166831	ENSGT00940000166821.a	ENSGT00940000155281 #22	ENSGT00940000158227 #23	ENSGT00940000162156 #24	ENSGT00950000183019.f.a #26	ENSGT00940000159945 #27	ENSGT00940000159301 #28	ENSGT00940000161049 #29	ENSGT00390000010557 #30	ENSGT00940000158945 #31	ENSGT01050000244857.B.a #32	ENSGT00630000089910 #33	ENSGT00940000154067.d #34	ENSGT00940000158974 #35	ENSGT00940000154365.a.a #36	ENSGT00940000159586 #37	ENSGT00390000014069.a
Prairie vole	MODERN SPECIES	101	Rnf32 (ENSMOCG00000014460) #10	ENSMOCG00000018001	ENSMOCG00000013020	Shh (ENSMOCG00000008843) #11	Rbm33 (ENSMOCG00000021895) #12	ENSMOCG00000010240 #13	ENSMOCG00000019441	En2 (ENSMOCG00000015841) #14	Insig1 (ENSMOCG00000020032) #15	Htr5a (ENSMOCG00000019605) #16	Paxip1 (ENSMOCG00000013649) #17	Dpp6 (ENSMOCG00000000556) #18	Actr3b (ENSMOCG00000004828) #19	ENSMOCG00000016671	ENSMOCG00000020782	ENSMOCG00000001053 #22	Galnt11 (ENSMOCG00000005276) #23	Galntl5 (ENSMOCG00000013714) #24	Prkag2 (ENSMOCG00000001286) #26	Rheb (ENSMOCG00000022240) #27	Crygn (ENSMOCG00000015061) #28	Wdr86 (ENSMOCG00000000597) #29	Nub1 (ENSMOCG00000019268) #30	ENSMOCG00000015181	Smarcd3 (ENSMOCG00000010890) #31	Chpf2 (ENSMOCG00000007789) #32	Abcf2 (ENSMOCG00000015316) #33	Iqca1l (ENSMOCG00000015251) #34	Asb10 (ENSMOCG00000015543) #35	Gbx1 (ENSMOCG00000010139) #36	Agap3 (ENSMOCG00000006732) #37
Northern American deer mouse	MODERN SPECIES	16	Nom1 (ENSPEMG00000024180) #8	Lmbr1 (ENSPEMG00000000837) #9	Rnf32 (ENSPEMG00000023063) #10	ENSPEMG00000028888	Shh (ENSPEMG00000027532) #11	Rbm33 (ENSPEMG00000017918) #12	ENSPEMG00000016430 #13	En2 (ENSPEMG00000027515) #14	Insig1 (ENSPEMG00000022295) #15	Htr5a (ENSPEMG00000030608) #16	Paxip1 (ENSPEMG00000024228) #17	Dpp6 (ENSPEMG00000025609) #18	Actr3b (ENSPEMG00000018361) #19	Xrcc2 (ENSPEMG00000019759) #20	Cct8l1 (ENSPEMG00000026242) #21	Kmt2c (ENSPEMG00000030774) #22	Galnt11 (ENSPEMG00000019403) #23	Galntl5 (ENSPEMG00000013005) #24	Prkag2 (ENSPEMG00000023670) #26	Rheb (ENSPEMG00000023193) #27	Crygn (ENSPEMG00000000688) #28	Wdr86 (ENSPEMG00000010088) #29	Nub1 (ENSPEMG00000001953) #30	Smarcd3 (ENSPEMG00000017902) #31	Chpf2 (ENSPEMG00000023137) #32	Abcf2 (ENSPEMG00000011302) #33	Iqca1l (ENSPEMG00000008977) #34	Asb10 (ENSPEMG00000008631) #35	Agap3 (ENSPEMG00000017584) #37	ENSPEMG00000025700	Fastk (ENSPEMG00000012621)
Murinae	ANCESTRAL SPECIES	31	ENSGT00940000160059.a.a #7	ENSGT00940000153458.A #8	ENSGT00390000007809.b #9	ENSGT00390000003759 #10	ENSGT00940000159119.b #11	ENSGT00530000063891 #12	ENSGT00940000161119 #13	ENSGT00940000159935 #14	ENSGT00580000081600.c.a #15	ENSGT01010000222287.B.a.b.a #16	ENSGT00940000155757 #17	ENSGT00940000156280 #18	ENSGT00940000158304 #19	ENSGT00390000020445 #20	ENSGT00940000163221 #21	ENSGT00940000155281 #22	ENSGT00940000158227 #23	ENSGT00940000162156 #24	ENSGT00950000183019.f.a #26	ENSGT00940000159945 #27	ENSGT00940000159301 #28	ENSGT00940000161049 #29	ENSGT00390000010557 #30	ENSGT00940000158945 #31	ENSGT01050000244857.B.a #32	ENSGT00630000089910 #33	ENSGT00940000154067.d #34	ENSGT00940000158974 #35	ENSGT00940000154365.a.a #36	ENSGT00940000159586 #37	ENSGT00390000014069.a
Mus	ANCESTRAL SPECIES	24	ENSGT00940000160059.a.a #7	ENSGT00940000153458.A #8	ENSGT00390000007809.b #9	ENSGT00390000003759 #10	ENSGT00940000159119.b #11	ENSGT00530000063891 #12	ENSGT00940000161119 #13	ENSGT00940000159935 #14	ENSGT00580000081600.c.a #15	ENSGT01010000222287.B.a.b.a #16	ENSGT00940000155757 #17	ENSGT00940000156280 #18	ENSGT00940000158304 #19	ENSGT00390000020445 #20	ENSGT00940000163221 #21	ENSGT00940000155281 #22	ENSGT00940000158227 #23	ENSGT00800000125329	ENSGT00940000162156 #24	ENSGT00950000183019.f.a #26	ENSGT00940000159945 #27	ENSGT00940000159301 #28	ENSGT00940000161049 #29	ENSGT00390000010557 #30	ENSGT00940000158945 #31	ENSGT01050000244857.B.a #32	ENSGT00630000089910 #33	ENSGT00940000154067.d #34	ENSGT00940000158974 #35	ENSGT00940000154365.a.a #36	ENSGT00940000159586 #37
Mus_A	ANCESTRAL SPECIES	6	ENSGT00940000160059.a.a #7	ENSGT00940000153458.A #8	ENSGT00390000007809.b #9	ENSGT00390000003759 #10	ENSGT00940000159119.b #11	ENSGT00530000063891 #12	ENSGT00940000161119 #13	ENSGT00940000159935 #14	ENSGT00580000081600.c.a #15	ENSGT01010000222287.B.a.b.a #16	ENSGT00940000155757 #17	ENSGT00940000156280 #18	ENSGT00940000158304 #19	ENSGT00390000020445 #20	ENSGT00940000163221 #21	ENSGT00940000155281 #22	ENSGT00940000158227 #23	ENSGT00800000125329	ENSGT00940000162156 #24	ENSGT00950000183019.f.a #26	ENSGT00940000159945 #27	ENSGT00940000159301 #28	ENSGT00940000161049 #29	ENSGT00390000010557 #30	ENSGT00940000158945 #31	ENSGT01050000244857.B.a #32	ENSGT00630000089910 #33	ENSGT00940000154067.d #34	ENSGT00940000158974 #35	ENSGT00940000154365.a.a #36	ENSGT00940000159586 #37
Mus_B	ANCESTRAL SPECIES	4	ENSGT00940000160059.a.a #7	ENSGT00940000153458.A #8	ENSGT00390000007809.b #9	ENSGT00390000003759 #10	ENSGT00940000159119.b #11	ENSGT00530000063891 #12	ENSGT00940000161119 #13	ENSGT00940000159935 #14	ENSGT00580000081600.c.a #15	ENSGT01010000222287.B.a.b.a #16	ENSGT00940000155757 #17	ENSGT00940000156280 #18	ENSGT00940000158304 #19	ENSGT00390000020445 #20	ENSGT00940000163221 #21	ENSGT00940000155281 #22	ENSGT00940000158227 #23	ENSGT00800000125329	ENSGT00940000162156 #24	ENSGT00950000183019.f.a #26	ENSGT00940000159945 #27	ENSGT00940000159301 #28	ENSGT00940000161049 #29	ENSGT00390000010557 #30	ENSGT00940000158945 #31	ENSGT01050000244857.B.a #32	ENSGT00630000089910 #33	ENSGT00940000154067.d #34	ENSGT00940000158974 #35	ENSGT00940000154365.a.a #36	ENSGT00940000159586 #37
Mouse	MODERN SPECIES	14	Gm7361 (ENSMUSG00000059645)	Gm10220 (ENSMUSG00000067698)	5031410I06Rik (ENSMUSG00000051940)	Gm10471 (ENSMUSG00000073116)	Gm7347 (ENSMUSG00000073117)	Speer4a (ENSMUSG00000073119)	Gm5862 (ENSMUSG00000067700)	Gm1979 (ENSMUSG00000091049)	Gm21698 (ENSMUSG00000096045)	Gm21680 (ENSMUSG00000106627)	Gm21671 (ENSMUSG00000095550)	Gm21663 (ENSMUSG00000104824)	Actr3b (ENSMUSG00000056367) #19	Xrcc2 (ENSMUSG00000028933) #20	Cct8l1 (ENSMUSG00000038044) #21	Kmt2c (ENSMUSG00000038056) #22	E130116L18Rik (ENSMUSG00000054116)	Galnt11 (ENSMUSG00000038072) #23	Galntl5 (ENSMUSG00000028938) #24	Prkag2 (ENSMUSG00000028944) #26	Rheb (ENSMUSG00000028945) #27	Crygn (ENSMUSG00000038135) #28	Wdr86 (ENSMUSG00000055235) #29	Nub1 (ENSMUSG00000028954) #30	Smarcd3 (ENSMUSG00000028949) #31	Chpf2 (ENSMUSG00000038181) #32	Abcf2 (ENSMUSG00000028953) #33	Iqca1l (ENSMUSG00000038199) #34	Asb10 (ENSMUSG00000038204) #35	Gbx1 (ENSMUSG00000067724) #36	Agap3 (ENSMUSG00000023353) #37
Mus_C	ANCESTRAL SPECIES	4	ENSGT00940000160059.a.a #7	ENSGT00940000153458.A #8	ENSGT00390000007809.b #9	ENSGT00390000003759 #10	ENSGT00940000159119.b #11	ENSGT00530000063891 #12	ENSGT00940000161119 #13	ENSGT00940000159935 #14	ENSGT00580000081600.c.a #15	ENSGT01010000222287.B.a.b.a #16	ENSGT00940000155757 #17	ENSGT00940000156280 #18	ENSGT00940000158304 #19	ENSGT00390000020445 #20	ENSGT00940000163221 #21	ENSGT00940000155281 #22	ENSGT00940000158227 #23	ENSGT00800000125329	ENSGT00940000162156 #24	ENSGT00950000183019.f.a #26	ENSGT00940000159945 #27	ENSGT00940000159301 #28	ENSGT00940000161049 #29	ENSGT00390000010557 #30	ENSGT00940000158945 #31	ENSGT01050000244857.B.a #32	ENSGT00630000089910 #33	ENSGT00940000154067.d #34	ENSGT00940000158974 #35	ENSGT00940000154365.a.a #36	ENSGT00940000159586 #37
Steppe mouse	MODERN SPECIES	34											Actr3b (ENSMSIG00000015155) #19	Xrcc2 (ENSMSIG00000015358) #20	ENSMSIG00000015382	Cct8l1 (ENSMSIG00000015391) #21	ENSMSIG00000015400	Kmt2c (ENSMSIG00000015422) #22	Galnt11 (ENSMSIG00000016201) #23	E130116L18Rik (ENSMSIG00000016270)	Prkag2 (ENSMSIG00000016296) #26	ENSMSIG00000016358	Rheb (ENSMSIG00000016368) #27	Crygn (ENSMSIG00000016389) #28	ENSMSIG00000016410 #29	ENSMSIG00000016414	Nub1 (ENSMSIG00000016418) #30	Smarcd3 (ENSMSIG00000016483) #31	Chpf2 (ENSMSIG00000016589) #32	Abcf2 (ENSMSIG00000016614) #33	Iqca1l (ENSMSIG00000016636) #34	ENSMSIG00000016686 #35	ENSMSIG00000016756 #37
spretus	MODERN SPECIES	14	Mnx1 (MGP_SPRETEiJ_G0028040) #7	MGP_SPRETEiJ_G0028039 #8	Lmbr1 (MGP_SPRETEiJ_G0028038) #9	MGP_SPRETEiJ_G0028037 #10	Shh (MGP_SPRETEiJ_G0028036) #11	Rbm33 (MGP_SPRETEiJ_G0028035) #12	MGP_SPRETEiJ_G0028034 #13	En2 (MGP_SPRETEiJ_G0028033) #14	Insig1 (MGP_SPRETEiJ_G0028032) #15	Htr5a (MGP_SPRETEiJ_G0028031) #16	Paxip1 (MGP_SPRETEiJ_G0028030) #17	Dpp6 (MGP_SPRETEiJ_G0028029) #18	Actr3b (MGP_SPRETEiJ_G0028028) #19	Xrcc2 (MGP_SPRETEiJ_G0028027) #20	Cct8l1 (MGP_SPRETEiJ_G0028026) #21	Kmt2c (MGP_SPRETEiJ_G0028025) #22	E130116L18Rik (MGP_SPRETEiJ_G0028024)	Galnt11 (MGP_SPRETEiJ_G0028023) #23	Galntl5 (MGP_SPRETEiJ_G0028022) #24	Prkag2 (MGP_SPRETEiJ_G0028021) #26	Rheb (MGP_SPRETEiJ_G0028020) #27	Crygn (MGP_SPRETEiJ_G0028019) #28	Wdr86 (MGP_SPRETEiJ_G0028018) #29	Nub1 (MGP_SPRETEiJ_G0028017) #30	Smarcd3 (MGP_SPRETEiJ_G0028016) #31	Chpf2 (MGP_SPRETEiJ_G0028015) #32	Abcf2 (MGP_SPRETEiJ_G0028014) #33	Iqca1l (MGP_SPRETEiJ_G0028013) #34	Asb10 (MGP_SPRETEiJ_G0028012) #35	Gbx1 (MGP_SPRETEiJ_G0028011) #36	Agap3 (MGP_SPRETEiJ_G0028010) #37
Ryukyu mouse	MODERN SPECIES	14	Ube3c (MGP_CAROLIEiJ_G0027045)	Mnx1 (MGP_CAROLIEiJ_G0027044) #7	MGP_CAROLIEiJ_G0027043 #8	Lmbr1 (MGP_CAROLIEiJ_G0027042) #9	Rnf32 (MGP_CAROLIEiJ_G0027041) #10	Shh (MGP_CAROLIEiJ_G0027040) #11	Rbm33 (MGP_CAROLIEiJ_G0027039) #12	Cnpy1 (MGP_CAROLIEiJ_G0027038) #13	En2 (MGP_CAROLIEiJ_G0027037) #14	Insig1 (MGP_CAROLIEiJ_G0027036) #15	Htr5a (MGP_CAROLIEiJ_G0027035) #16	Paxip1 (MGP_CAROLIEiJ_G0027034) #17	Dpp6 (MGP_CAROLIEiJ_G0027033) #18	Xrcc2 (MGP_CAROLIEiJ_G0027031) #20	Cct8l1 (MGP_CAROLIEiJ_G0027030) #21	Kmt2c (MGP_CAROLIEiJ_G0027029) #22	E130116L18Rik (MGP_CAROLIEiJ_G0027028)	Galnt11 (MGP_CAROLIEiJ_G0027027) #23	Galntl5 (MGP_CAROLIEiJ_G0027026) #24	Prkag2 (MGP_CAROLIEiJ_G0027025) #26	Rheb (MGP_CAROLIEiJ_G0027024) #27	Crygn (MGP_CAROLIEiJ_G0027023) #28	MGP_CAROLIEiJ_G0027022 #29	Nub1 (MGP_CAROLIEiJ_G0027021) #30	Smarcd3 (MGP_CAROLIEiJ_G0027020) #31	Chpf2 (MGP_CAROLIEiJ_G0027019) #32	Abcf2 (MGP_CAROLIEiJ_G0027018) #33	Iqca1l (MGP_CAROLIEiJ_G0027017) #34	Asb10 (MGP_CAROLIEiJ_G0027016) #35	Gbx1 (MGP_CAROLIEiJ_G0027015) #36	Agap3 (MGP_CAROLIEiJ_G0027014) #37
Shrew mouse	MODERN SPECIES	11	Mnx1 (MGP_PahariEiJ_G0021817) #7	MGP_PahariEiJ_G0021816 ##8	Lmbr1 (MGP_PahariEiJ_G0021815) #9	Rnf32 (MGP_PahariEiJ_G0021814) #10	Shh (MGP_PahariEiJ_G0021813) #11	Rbm33 (MGP_PahariEiJ_G0021812) #12	MGP_PahariEiJ_G0021811 #13	En2 (MGP_PahariEiJ_G0021810) #14	Insig1 (MGP_PahariEiJ_G0021809) #15	Htr5a (MGP_PahariEiJ_G0021808) #16	Paxip1 (MGP_PahariEiJ_G0021807) #17	Dpp6 (MGP_PahariEiJ_G0021806) #18	MGP_PahariEiJ_G0021805 #19	MGP_PahariEiJ_G0021804	Cct8l1 (MGP_PahariEiJ_G0021803) #21	Kmt2c (MGP_PahariEiJ_G0021802) #22	MGP_PahariEiJ_G0021801	Galnt11 (MGP_PahariEiJ_G0021800) #23	Galntl5 (MGP_PahariEiJ_G0021799) #24	Prkag2 (MGP_PahariEiJ_G0021798) #26	Rheb (MGP_PahariEiJ_G0021797) #27	Crygn (MGP_PahariEiJ_G0021796) #28	Wdr86 (MGP_PahariEiJ_G0021795) #29	Nub1 (MGP_PahariEiJ_G0021794) #30	Smarcd3 (MGP_PahariEiJ_G0021793) #31	Chpf2 (MGP_PahariEiJ_G0021792) #32	Abcf2 (MGP_PahariEiJ_G0021791) #33	Iqca1l (MGP_PahariEiJ_G0021790) #34	Asb10 (MGP_PahariEiJ_G0021789) #35	Gbx1 (MGP_PahariEiJ_G0021788) #36	MGP_PahariEiJ_G0021787 #37
Rat	MODERN SPECIES	14	Lmbr1 (ENSRNOG00000059589) #9	Rnf32 (ENSRNOG00000005691) #10	Shh (ENSRNOG00000006120) #11	Rbm33 (ENSRNOG00000006718) #12	Cnpy1 (ENSRNOG00000028311) #13	En2 (ENSRNOG00000006846) #14	Insig1 (ENSRNOG00000006859) #15	Htr5a (ENSRNOG00000007066) #16	Paxip1 (ENSRNOG00000007131) #17	Dpp6 (ENSRNOG00000030547) #18	Actr3b (ENSRNOG00000031855) #19	Xrcc2 (ENSRNOG00000007493) #20	AABR07059161.1 (ENSRNOG00000051942)	Rpl10a-ps9 (ENSRNOG00000047067)	Cct8l2 (ENSRNOG00000047114) #21	Kmt2c (ENSRNOG00000061080) #22	Galnt11 (ENSRNOG00000008117) #23	Galntl5 (ENSRNOG00000040301) #24	LOC120102456 (ENSRNOG00000062492)	Prkag2 (ENSRNOG00000009085) #26	Rheb (ENSRNOG00000050578) #27	Crygn (ENSRNOG00000009226) #28	Wdr86 (ENSRNOG00000025735) #29	Nub1 (ENSRNOG00000009282) #30	AC099360.1 (ENSRNOG00000025214)	Smarcd3 (ENSRNOG00000010077) #31	Chpf2 (ENSRNOG00000010466) #32	Abcf2 (ENSRNOG00000010609) #33	Iqca1l (ENSRNOG00000011092) #34	Asb10 (ENSRNOG00000024885) #35	Gbx1 (ENSRNOG00000013369) #36
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	1374	ENSNGAG00000013870	Shh (ENSNGAG00000024336) #11	ENSNGAG00000015914 #12	ENSNGAG00000012731 #12	ENSNGAG00000014003 #13	En2 (ENSNGAG00000019365) #14	Insig1 (ENSNGAG00000018486) #15	ENSNGAG00000001402	Htr5a (ENSNGAG00000023507) #16	Paxip1 (ENSNGAG00000022525) #17	Dpp6 (ENSNGAG00000001967) #18	Actr3b (ENSNGAG00000022250) #19	Xrcc2 (ENSNGAG00000015889) #20	Cct8l1 (ENSNGAG00000024263) #21	ENSNGAG00000008770	ENSNGAG00000024244 #22	Galnt11 (ENSNGAG00000016540) #23	Galntl5 (ENSNGAG00000002774) #24	Prkag2 (ENSNGAG00000021870) #26	Rheb (ENSNGAG00000023353) #27	Crygn (ENSNGAG00000024102) #28	Wdr86 (ENSNGAG00000022320) #29	Nub1 (ENSNGAG00000021107) #30	Smarcd3 (ENSNGAG00000020148) #31	Chpf2 (ENSNGAG00000018522) #32	Abcf2 (ENSNGAG00000023843) #33	Iqca1l (ENSNGAG00000014895) #34	Asb10 (ENSNGAG00000023049) #35	Gbx1 (ENSNGAG00000013671) #36	Agap3 (ENSNGAG00000023687) #37	ENSNGAG00000021132
Upper Galilee mountains blind mole rat	MODERN SPECIES	1386															ENSNGAG00000019967	ENSNGAG00000019545 #22	ENSNGAG00000011339	Myl2 (ENSNGAG00000000246)	ENSNGAG00000015635	ENSNGAG00000014227	Pheta1 (ENSNGAG00000013725)	Sh2b3 (ENSNGAG00000020046)	ENSNGAG00000018744	Brap (ENSNGAG00000018065)	ENSNGAG00000017577	Aldh2 (ENSNGAG00000012418)	Mapkapk5 (ENSNGAG00000019670)	ENSNGAG00000019879	Erp29 (ENSNGAG00000019192)	ENSNGAG00000017782	Trafd1 (ENSNGAG00000013405)
Lesser Egyptian jerboa	MODERN SPECIES	172	ENSJJAG00000011947	Lmbr1 (ENSJJAG00000012968) #9	Rnf32 (ENSJJAG00000017940) #10	Shh (ENSJJAG00000019136) #11	ENSJJAG00000020415 #12	ENSJJAG00000015197	ENSJJAG00000015641 #12	ENSJJAG00000016791 #13	En2 (ENSJJAG00000016874) #14	Insig1 (ENSJJAG00000018289) #15	Htr5a (ENSJJAG00000019192) #16	Paxip1 (ENSJJAG00000023948) #17	Dpp6 (ENSJJAG00000013246) #18	Actr3b (ENSJJAG00000018668) #19	ENSJJAG00000019172	ENSJJAG00000019327 #22	Galnt11 (ENSJJAG00000024147) #23	Galntl5 (ENSJJAG00000004070) #24	ENSJJAG00000006959 ##26	Prkag2 (ENSJJAG00000009778) #26	ENSJJAG00000007504 #27	Crygn (ENSJJAG00000010524) #28	Wdr86 (ENSJJAG00000022192) #29	Nub1 (ENSJJAG00000022628) #30	Smarcd3 (ENSJJAG00000007835) #31	Chpf2 (ENSJJAG00000009557) #32	ENSJJAG00000010250 #33	Iqca1l (ENSJJAG00000011826) #34	Asb10 (ENSJJAG00000013788) #35	Gbx1 (ENSJJAG00000014103) #36	Agap3 (ENSJJAG00000012866) #37
Kangaroo rat	MODERN SPECIES	420		Ube3c (ENSDORG00000015913)	Nom1 (ENSDORG00000015682) #8	Lmbr1 (ENSDORG00000012962) #9	Rnf32 (ENSDORG00000002319) #10	ENSDORG00000027267 #12	ENSDORG00000028249 #12	ENSDORG00000026869 #13	En2 (ENSDORG00000028135) #14	Insig1 (ENSDORG00000026050) #15	Htr5a (ENSDORG00000014112) #16	Paxip1 (ENSDORG00000006482) #17	Dpp6 (ENSDORG00000012792) #18	Actr3b (ENSDORG00000001848) #19	ENSDORG00000030238	ENSDORG00000026332 #22	Galnt11 (ENSDORG00000002329) #23	Galntl5 (ENSDORG00000003460) #24	ENSDORG00000026219 ##26	ENSDORG00000008404 #26	Rheb (ENSDORG00000010304) #27	Crygn (ENSDORG00000028405) #28	Wdr86 (ENSDORG00000012494) #29	Nub1 (ENSDORG00000012490) #30	Smarcd3 (ENSDORG00000012674) #31	Chpf2 (ENSDORG00000012673) #32	Abcf2 (ENSDORG00000012672) #33	Iqca1l (ENSDORG00000002574) #34	Asb10 (ENSDORG00000003974) #35	ENSDORG00000029937 #37	ENSDORG00000023970 #37
Lagomorpha	ANCESTRAL SPECIES	295												ENSGT00940000155757 #17	ENSGT00940000156280 #18	ENSGT00940000158304 #19	ENSGT00940000163221 #21	ENSGT00940000155281 #22	ENSGT00940000158227 #23	ENSGT00940000162156 #24
Rabbit	MODERN SPECIES	4	DNM3 (ENSOCUG00000005995)	ENSOCUG00000006005	C1orf105 (ENSOCUG00000029014)	ENSOCUG00000038737	SUCO (ENSOCUG00000007590)	ENSOCUG00000023248	ENSOCUG00000036066	ENSOCUG00000025648	ENSOCUG00000017862	ENSOCUG00000036173	PAXIP1 (ENSOCUG00000023370) #17	ENSOCUG00000029811	DPP6 (ENSOCUG00000012252) #18	ENSOCUG00000000459 #19	CCT8L2 (ENSOCUG00000000742) #21	KMT2C (ENSOCUG00000011322) #22	GALNT11 (ENSOCUG00000011317) #23	GALNTL5 (ENSOCUG00000011307) #24	ENSOCUG00000021944	PRKAG2 (ENSOCUG00000006463) #26	ENSOCUG00000034117	ENSOCUG00000029750	RHEB (ENSOCUG00000013173) #27	CRYGN (ENSOCUG00000013525) #28	WDR86 (ENSOCUG00000004055) #29	NUB1 (ENSOCUG00000004031) #30	SMARCD3 (ENSOCUG00000000249) #31	CHPF2 (ENSOCUG00000000247) #32	ABCF2 (ENSOCUG00000000245) #33	H2BK1 (ENSOCUG00000032108)	IQCA1L (ENSOCUG00000015245) #34
Pika	MODERN SPECIES	1357																KMT2C (ENSOPRG00000013818) #22
Tree shrew	MODERN SPECIES	181																KMT2C (ENSTBEG00000010272) #22