Glires	ANCESTRAL SPECIES	5	ENSGT00940000154543.b	ENSGT00390000008360	ENSGT00940000155105 #7	ENSGT00940000155106 #8	ENSGT00390000014167 #10	ENSGT00940000163747 #11	ENSGT00940000157289.a #12	ENSGT00940000158071 #13	ENSGT00530000063853.a.a.b #15	ENSGT01050000244939.a.a.a #16	ENSGT00390000018605 #17	ENSGT00940000157533 #18	ENSGT00400000022103.a #19	ENSGT00390000001805 #20	ENSGT00940000157075 #21	ENSGT00940000154843.F #22	ENSGT00390000004886 #23	ENSGT00940000158768 #24	ENSGT00940000156920 #25	ENSGT00390000016974 #26	ENSGT00390000003564	ENSGT00940000157040 #28	ENSGT00940000163681 #29	ENSGT00940000163455	ENSGT00950000182848.c.b.a.a #31	ENSGT00940000156849	ENSGT00940000163315	ENSGT00390000001263 #34	ENSGT00940000154772 #35	ENSGT00940000156581 #36	ENSGT00390000006777.b #37
Rodentia	ANCESTRAL SPECIES	6	ENSGT00940000154543.b	ENSGT00390000008360	ENSGT00940000155105 #7	ENSGT00940000155106 #8	ENSGT00390000014167 #10	ENSGT00940000163747 #11	ENSGT00940000157289.a #12	ENSGT00940000158071 #13	ENSGT00530000063853.a.a.b #15	ENSGT01050000244939.a.a.a #16	ENSGT00390000018605 #17	ENSGT00940000157533 #18	ENSGT00400000022103.a #19	ENSGT00390000001805 #20	ENSGT00940000157075 #21	ENSGT00940000154843.F #22	ENSGT00390000004886 #23	ENSGT00940000158768 #24	ENSGT00940000156920 #25	ENSGT00390000016974 #26	ENSGT00390000003564	ENSGT00940000157040 #28	ENSGT00940000163681 #29	ENSGT00940000163455	ENSGT00950000182848.c.b.a.a #31	ENSGT00940000156849	ENSGT00940000163315	ENSGT00390000001263 #34	ENSGT00940000154772 #35	ENSGT00940000156581 #36	ENSGT00390000006777.b #37
Rodentia_B	ANCESTRAL SPECIES	8	ENSGT00940000154543.b	ENSGT00390000008360	ENSGT00940000155105 #7	ENSGT00940000155106 #8	ENSGT00390000014167 #10	ENSGT00940000163747 #11	ENSGT00940000157289.a #12	ENSGT00940000158071 #13	ENSGT00530000063853.a.a.b #15	ENSGT01050000244939.a.a.a #16	ENSGT00390000018605 #17	ENSGT00940000157533 #18	ENSGT00400000022103.a #19	ENSGT00390000001805 #20	ENSGT00940000157075 #21	ENSGT00940000154843.F #22	ENSGT00390000004886 #23	ENSGT00940000158768 #24	ENSGT00940000156920 #25	ENSGT00390000016974 #26	ENSGT00390000003564	ENSGT00940000157040 #28	ENSGT00940000163681 #29	ENSGT00940000163455	ENSGT00950000182848.c.b.a.a #31	ENSGT00940000156849	ENSGT00940000163315	ENSGT00390000001263 #34	ENSGT00940000154772 #35	ENSGT00940000156581 #36	ENSGT00390000006777.b #37
Myomorpha	ANCESTRAL SPECIES	11	ENSGT00940000154543.b	ENSGT00390000008360	ENSGT00940000155105 #7	ENSGT00940000155106 #8	ENSGT00390000014167 #10	ENSGT00940000163747 #11	ENSGT00940000157289.a #12	ENSGT00940000158071 #13	ENSGT00530000063853.a.a.b #15	ENSGT01050000244939.a.a.a #16	ENSGT00390000018605 #17	ENSGT00940000157533 #18	ENSGT00400000022103.a #19	ENSGT00390000001805 #20	ENSGT00940000157075 #21	ENSGT00940000154843.F #22	ENSGT00390000004886 #23	ENSGT00940000158768 #24	ENSGT00940000156920 #25	ENSGT00390000016974 #26	ENSGT00390000003564	ENSGT00940000157040 #28	ENSGT00940000163681 #29	ENSGT00940000163455	ENSGT00950000182848.c.b.a.a #31	ENSGT00940000156849	ENSGT00940000163315	ENSGT00390000001263 #34	ENSGT00940000154772 #35	ENSGT00940000156581 #36	ENSGT00390000006777.b #37
Muroidea	ANCESTRAL SPECIES	15	ENSGT00940000154543.b	ENSGT00390000008360	ENSGT00940000155105 #7	ENSGT00940000155106 #8	ENSGT00390000014167 #10	ENSGT00940000163747 #11	ENSGT00940000157289.a #12	ENSGT00940000158071 #13	ENSGT00530000063853.a.a.b #15	ENSGT01050000244939.a.a.a #16	ENSGT00390000018605 #17	ENSGT00940000157533 #18	ENSGT00400000022103.a #19	ENSGT00390000001805 #20	ENSGT00940000157075 #21	ENSGT00940000154843.F #22	ENSGT00390000004886 #23	ENSGT00940000158768 #24	ENSGT00940000156920 #25	ENSGT00390000016974 #26	ENSGT00390000003564	ENSGT00940000157040 #28	ENSGT00940000163681 #29	ENSGT00940000163455	ENSGT00950000182848.c.b.a.a #31	ENSGT00940000156849	ENSGT00940000163315	ENSGT00390000001263 #34	ENSGT00940000154772 #35	ENSGT00940000156581 #36	ENSGT00390000006777.b #37
Muroidea_A	ANCESTRAL SPECIES	14	ENSGT00390000008360	ENSGT00940000155105.r ##7	ENSGT00940000155105.q #7	ENSGT00940000155106 #8	ENSGT00390000014167 #10	ENSGT00940000163747 #11	ENSGT00940000157289.a #12	ENSGT00940000158071 #13	ENSGT00530000063853.a.a.b #15	ENSGT01050000244939.a.a.a #16	ENSGT00390000018605 #17	ENSGT00940000157533 #18	ENSGT00400000022103.a #19	ENSGT00390000001805 #20	ENSGT00940000157075 #21	ENSGT00940000154843.F #22	ENSGT00390000004886 #23	ENSGT00940000158768 #24	ENSGT00940000156920 #25	ENSGT00390000016974 #26	ENSGT00390000003564	ENSGT00940000157040 #28	ENSGT00940000163681 #29	ENSGT00940000163455	ENSGT00950000182848.c.b.a.a #31	ENSGT00940000156849	ENSGT00940000163315	ENSGT00390000001263 #34	ENSGT00940000154772 #35	ENSGT00940000156581 #36	ENSGT00390000006777.b #37
Cricetidae	ANCESTRAL SPECIES	22	ENSGT00940000155562	ENSGT00940000154543.b	ENSGT00940000155105.q #7	ENSGT00940000155106 #8	ENSGT00390000014167 #10	ENSGT00940000163747 #11	ENSGT00940000157289.a #12	ENSGT00940000158071 #13	ENSGT00530000063853.a.a.b #15	ENSGT01050000244939.a.a.a #16	ENSGT00390000018605 #17	ENSGT00940000157533 #18	ENSGT00400000022103.a #19	ENSGT00390000001805 #20	ENSGT00940000157075 #21	ENSGT00940000154843.F #22	ENSGT00390000004886 #23	ENSGT00940000158768 #24	ENSGT00940000156920 #25	ENSGT00390000016974 #26	ENSGT00390000003564	ENSGT00940000157040 #28	ENSGT00940000163681 #29	ENSGT00950000182848.c.b.a.a #31	ENSGT00940000156849	ENSGT00390000001263 #34	ENSGT00940000154772.x ##35	ENSGT00940000156581 #36	ENSGT00390000006777.b #37	ENSGT00530000063859.a	ENSGT00900000143353
Cricetinae	ANCESTRAL SPECIES	20	ENSGT00940000155562	ENSGT00940000154543.b	ENSGT00940000155105.q #7	ENSGT00940000155106 #8	ENSGT00390000014167 #10	ENSGT00940000163747 #11	ENSGT00940000157289.a #12	ENSGT00940000158071 #13	ENSGT00530000063853.a.a.b #15	ENSGT01050000244939.a.a.a #16	ENSGT00390000018605 #17	ENSGT00940000157533 #18	ENSGT00400000022103.a #19	ENSGT00390000001805 #20	ENSGT00940000157075 #21	ENSGT00940000154843.F #22	ENSGT00390000004886 #23	ENSGT00940000158768 #24	ENSGT00940000156920 #25	ENSGT00390000016974 #26	ENSGT00390000003564	ENSGT00940000157040 #28	ENSGT00940000163681 #29	ENSGT00700000106228	ENSGT00950000182848.c.b.a.a #31	ENSGT00940000156849	ENSGT00940000165524 #33	ENSGT00390000001263 #34	ENSGT00940000154772.w.a.a #35	ENSGT00940000156581 #36	ENSGT00390000006777.b #37
Chinese hamster chok1gshd	MODERN SPECIES	317	ENSCGRG00001021795 #7	Cdyl (ENSCGRG00001002703) #8	ENSCGRG00001013878 #9	Rpp40 (ENSCGRG00001018328) #10	Ppp1r3g (ENSCGRG00001001814) #11	Lyrm4 (ENSCGRG00001020406) #12	Fars2 (ENSCGRG00001022626) #13	ENSCGRG00001012890 #14	Nrn1 (ENSCGRG00001017665) #15	F13a1 (ENSCGRG00001021633) #16	Ly86 (ENSCGRG00001014143) #17	Rreb1 (ENSCGRG00001019036) #18	Ssr1 (ENSCGRG00001024823) #19	Cage1 (ENSCGRG00001022830) #20	Riok1 (ENSCGRG00001018868) #21	Dsp (ENSCGRG00001022227) #22	ENSCGRG00001001076 #23	Bmp6 (ENSCGRG00001022962) #24	Txndc5 (ENSCGRG00001022611) #25	EEF1E1 (ENSCGRG00001017026) #26	ENSCGRG00001022699 #27	Slc35b3 (ENSCGRG00001016228) #28	Ofcc1 (ENSCGRG00001020125) #29	ENSCGRG00001022144 #30	Tfap2a (ENSCGRG00001009427) #31	ENSCGRG00001003056 #32	ENSCGRG00001011065 #33	Pak1ip1 (ENSCGRG00001006503) #34	ENSCGRG00001020757 #35	Mak (ENSCGRG00001023197) #36	Gcm2 (ENSCGRG00001002518) #37
Golden Hamster	MODERN SPECIES	623	Tex56 (ENSMAUG00000002707)	ENSMAUG00000001515 ##7	ENSMAUG00000020164 #7	Cdyl (ENSMAUG00000011510) #8	Rpp40 (ENSMAUG00000010268) #10	Lyrm4 (ENSMAUG00000009051) #12	Fars2 (ENSMAUG00000008493) #13	Nrn1 (ENSMAUG00000008121) #15	F13a1 (ENSMAUG00000003924) #16	Ly86 (ENSMAUG00000002933) #17	ENSMAUG00000002202	Ssr1 (ENSMAUG00000001251) #19	Cage1 (ENSMAUG00000000989) #20	Riok1 (ENSMAUG00000012751) #21	ENSMAUG00000012558	Dsp (ENSMAUG00000012469) #22	Snrnp48 (ENSMAUG00000011944) #23	Bmp6 (ENSMAUG00000011185) #24	Txndc5 (ENSMAUG00000006635) #25	Bloc1s5 (ENSMAUG00000006022) #26	Eef1e1 (ENSMAUG00000005292)	Slc35b3 (ENSMAUG00000003904) #28	Ofcc1 (ENSMAUG00000001427) #29	ENSMAUG00000011635	ENSMAUG00000011470	Tfap2a (ENSMAUG00000015869) #31	Gcnt2 (ENSMAUG00000015681)	Gcm2 (ENSMAUG00000015036) #37	ENSMAUG00000013963	Elovl2 (ENSMAUG00000013398)	ENSMAUG00000013196
Cricetidae_B	ANCESTRAL SPECIES	22	ENSGT00390000008360	ENSGT00940000155105.r ##7	ENSGT00940000155105.q #7	ENSGT00940000155106 #8	ENSGT00390000014167 #10	ENSGT00940000163747 #11	ENSGT00940000157289.a #12	ENSGT00940000158071 #13	ENSGT00530000063853.a.a.b #15	ENSGT01050000244939.a.a.a #16	ENSGT00390000018605 #17	ENSGT00940000157533 #18	ENSGT00400000022103.a #19	ENSGT00390000001805 #20	ENSGT00940000157075 #21	ENSGT00940000154843.F #22	ENSGT00390000004886 #23	ENSGT00940000158768 #24	ENSGT00940000156920 #25	ENSGT00390000016974 #26	ENSGT00390000003564	ENSGT00940000157040 #28	ENSGT00940000163681 #29	ENSGT00950000182848.c.b.a.a #31	ENSGT00940000156849	ENSGT00390000001263 #34	ENSGT00940000154772.x ##35	ENSGT00940000156581 #36	ENSGT00390000006777.b #37	ENSGT00530000063859.a	ENSGT00900000143353
Northern American deer mouse	MODERN SPECIES	18	Cdyl (ENSPEMG00000022690) #8	Rpp40 (ENSPEMG00000020809) #10	Ppp1r3g (ENSPEMG00000014441) #11	Lyrm4 (ENSPEMG00000030913) #12	Fars2 (ENSPEMG00000017477) #13	ENSPEMG00000028708	ENSPEMG00000029972	ENSPEMG00000027489	Nrn1 (ENSPEMG00000010532) #15	F13a1 (ENSPEMG00000016989) #16	Ly86 (ENSPEMG00000008759) #17	Rreb1 (ENSPEMG00000014153) #18	Ssr1 (ENSPEMG00000010303) #19	Cage1 (ENSPEMG00000008259) #20	Riok1 (ENSPEMG00000017844) #21	Dsp (ENSPEMG00000014596) #22	Snrnp48 (ENSPEMG00000008872) #23	Bmp6 (ENSPEMG00000014388) #24	Txndc5 (ENSPEMG00000009019) #25	Bloc1s5 (ENSPEMG00000030914) #26	Eef1e1 (ENSPEMG00000018182)	Slc35b3 (ENSPEMG00000001883) #28	Ofcc1 (ENSPEMG00000020547) #29	ENSPEMG00000022599	Tfap2a (ENSPEMG00000023144) #31	Gcnt2 (ENSPEMG00000029235)	Pak1ip1 (ENSPEMG00000016331) #34	ENSPEMG00000009538 ##35	Mak (ENSPEMG00000017417) #36	Gcm2 (ENSPEMG00000013000) #37	Sycp2l (ENSPEMG00000017765)
Prairie vole	MODERN SPECIES	3	ENSMOCG00000006528 ##7	ENSMOCG00000009658 #7	Cdyl (ENSMOCG00000012115) #8	Rpp40 (ENSMOCG00000000305) #10	Ppp1r3g (ENSMOCG00000005122) #11	Lyrm4 (ENSMOCG00000015484) #12	Fars2 (ENSMOCG00000021203) #13	Nrn1 (ENSMOCG00000015236) #15	F13a1 (ENSMOCG00000018301) #16	ENSMOCG00000003554	Ly86 (ENSMOCG00000015534) #17	ENSMOCG00000014284	ENSMOCG00000014703 #19	Cage1 (ENSMOCG00000018199) #20	Riok1 (ENSMOCG00000017032) #21	Dsp (ENSMOCG00000001090) #22	Snrnp48 (ENSMOCG00000015555) #23	Bmp6 (ENSMOCG00000012416) #24	ENSMOCG00000017191 #25	Bloc1s5 (ENSMOCG00000020590) #26	Eef1e1 (ENSMOCG00000022997)	ENSMOCG00000002348	Slc35b3 (ENSMOCG00000016017) #28	Ofcc1 (ENSMOCG00000022206) #29	Tfap2a (ENSMOCG00000019783) #31	Gcnt2 (ENSMOCG00000012916)	Pak1ip1 (ENSMOCG00000006443) #34	Tmem14c (ENSMOCG00000000677) ##35	Mak (ENSMOCG00000017296) #36	Gcm2 (ENSMOCG00000000782) #37	ENSMOCG00000002808
Murinae	ANCESTRAL SPECIES	21	ENSGT00390000008360	ENSGT00940000155105.r ##7	ENSGT00940000155105.q #7	ENSGT00940000155106 #8	ENSGT00390000014167 #10	ENSGT00940000163747 #11	ENSGT00940000157289.a #12	ENSGT00940000158071 #13	ENSGT00530000063853.a.a.b #15	ENSGT01050000244939.a.a.a #16	ENSGT00390000018605 #17	ENSGT00940000157533 #18	ENSGT00400000022103.a #19	ENSGT00390000001805 #20	ENSGT00940000157075 #21	ENSGT00940000154843.F #22	ENSGT00390000004886 #23	ENSGT00940000158768 #24	ENSGT00940000156920 #25	ENSGT00390000016974 #26	ENSGT00390000003564	ENSGT00940000157040 #28	ENSGT00940000163681 #29	ENSGT00940000163455	ENSGT00950000182848.c.b.a.a #31	ENSGT00940000156849	ENSGT00940000163315	ENSGT00390000001263 #34	ENSGT00940000154772 #35	ENSGT00940000156581 #36	ENSGT00390000006777.b #37
Mus	ANCESTRAL SPECIES	18	ENSGT00390000008360	ENSGT00940000155105.q.b #7	ENSGT00940000155105.q.a #7	ENSGT00940000155106 #8	ENSGT00390000014167 #10	ENSGT00940000163747 #11	ENSGT00940000157289.a #12	ENSGT00940000158071 #13	ENSGT00530000063853.a.a.b #15	ENSGT01050000244939.a.a.a #16	ENSGT00390000018605 #17	ENSGT00940000157533 #18	ENSGT00400000022103.a #19	ENSGT00390000001805 #20	ENSGT00940000157075 #21	ENSGT00940000154843.F #22	ENSGT00390000004886 #23	ENSGT00940000158768 #24	ENSGT00940000156920 #25	ENSGT00390000016974 #26	ENSGT00390000003564	ENSGT00940000157040 #28	ENSGT00940000163681 #29	ENSGT00940000163455	ENSGT00950000182848.c.b.a.a #31	ENSGT00940000156849	ENSGT00390000001263 #34	ENSGT00940000154772 #35	ENSGT00940000156581 #36	ENSGT00390000006777.b #37	ENSGT00530000063859.a
Mus_A	ANCESTRAL SPECIES	14	ENSGT00390000008360	ENSGT00940000155105.q.b #7	ENSGT00940000155105.q.a #7	ENSGT00940000155106 #8	ENSGT00390000014167 #10	ENSGT00940000163747 #11	ENSGT00940000157289.a #12	ENSGT00940000158071 #13	ENSGT00530000063853.a.a.b #15	ENSGT01050000244939.a.a.a #16	ENSGT00390000018605 #17	ENSGT00940000157533 #18	ENSGT00400000022103.a #19	ENSGT00390000001805 #20	ENSGT00940000157075 #21	ENSGT00940000154843.F #22	ENSGT00390000004886 #23	ENSGT00940000158768 #24	ENSGT00940000156920 #25	ENSGT00390000016974 #26	ENSGT00390000003564	ENSGT00940000157040 #28	ENSGT00940000163681 #29	ENSGT00940000163455	ENSGT00950000182848.c.b.a.a #31	ENSGT00940000156849	ENSGT00390000001263 #34	ENSGT00940000154772 #35	ENSGT00940000156581 #36	ENSGT00390000006777.b #37	ENSGT00530000063859.a
Mus_B	ANCESTRAL SPECIES	13	ENSGT00390000008360	ENSGT00940000155105.q.b #7	ENSGT00940000155105.q.a #7	ENSGT00940000155106 #8	ENSGT00390000014167 #10	ENSGT00940000163747 #11	ENSGT00940000157289.a #12	ENSGT00940000158071 #13	ENSGT00530000063853.a.a.b #15	ENSGT01050000244939.a.a.a #16	ENSGT00390000018605 #17	ENSGT00940000157533 #18	ENSGT00400000022103.a #19	ENSGT00390000001805 #20	ENSGT00940000157075 #21	ENSGT00940000154843.F #22	ENSGT00390000004886 #23	ENSGT00940000158768 #24	ENSGT00940000156920 #25	ENSGT00390000016974 #26	ENSGT00390000003564	ENSGT00940000157040 #28	ENSGT00940000163681 #29	ENSGT00940000163455	ENSGT00950000182848.c.b.a.a #31	ENSGT00940000156849	ENSGT00390000001263 #34	ENSGT00940000154772 #35	ENSGT00940000156581 #36	ENSGT00390000006777.b #37	ENSGT00530000063859.a
Mus_C	ANCESTRAL SPECIES	10	ENSGT00390000008360	ENSGT00940000155105.q.b #7	ENSGT00940000155105.q.a #7	ENSGT00940000155106 #8	ENSGT00390000014167 #10	ENSGT00940000163747 #11	ENSGT00940000157289.a #12	ENSGT00940000158071 #13	ENSGT00530000063853.a.a.b #15	ENSGT01050000244939.a.a.a #16	ENSGT00390000018605 #17	ENSGT00940000157533 #18	ENSGT00400000022103.a #19	ENSGT00390000001805 #20	ENSGT00940000157075 #21	ENSGT00940000154843.F #22	ENSGT00390000004886 #23	ENSGT00940000158768 #24	ENSGT00940000156920 #25	ENSGT00390000016974 #26	ENSGT00390000003564	ENSGT00940000157040 #28	ENSGT00940000163681 #29	ENSGT00940000163455	ENSGT00950000182848.c.b.a.a #31	ENSGT00940000165524 #33	ENSGT00390000001263 #34	ENSGT00940000154772 #35	ENSGT00940000156581 #36	ENSGT00390000006777.b #37	ENSGT00530000063859.a
spretus	MODERN SPECIES	4	MGP_SPRETEiJ_G0019305	MGP_SPRETEiJ_G0019306	MGP_SPRETEiJ_G0019307	Cdyl (MGP_SPRETEiJ_G0019308) #8	Rpp40 (MGP_SPRETEiJ_G0019309) #10	Ppp1r3g (MGP_SPRETEiJ_G0019310) #11	Lyrm4 (MGP_SPRETEiJ_G0019311) #12	Fars2 (MGP_SPRETEiJ_G0019312) #13	Nrn1 (MGP_SPRETEiJ_G0019313) #15	F13a1 (MGP_SPRETEiJ_G0019314) #16	Ly86 (MGP_SPRETEiJ_G0019315) #17	Rreb1 (MGP_SPRETEiJ_G0019316) #18	Ssr1 (MGP_SPRETEiJ_G0019317) #19	Cage1 (MGP_SPRETEiJ_G0019318) #20	Riok1 (MGP_SPRETEiJ_G0019319) #21	Dsp (MGP_SPRETEiJ_G0019320) #22	Snrnp48 (MGP_SPRETEiJ_G0019321) #23	Bmp6 (MGP_SPRETEiJ_G0019322) #24	Txndc5 (MGP_SPRETEiJ_G0019323) #25	Bloc1s5 (MGP_SPRETEiJ_G0019324) #26	Slc35b3 (MGP_SPRETEiJ_G0019325) #28	Ofcc1 (MGP_SPRETEiJ_G0019326) #29	MGP_SPRETEiJ_G0019327	Tfap2a (MGP_SPRETEiJ_G0019328) #31	MGP_SPRETEiJ_G0019329 #33	Pak1ip1 (MGP_SPRETEiJ_G0019330) #34	Tmem14c (MGP_SPRETEiJ_G0019331) #35	Mak (MGP_SPRETEiJ_G0019332) #36	Gcm2 (MGP_SPRETEiJ_G0019333) #37	Elovl2 (MGP_SPRETEiJ_G0019335)	Smim13 (MGP_SPRETEiJ_G0019336)
Steppe mouse	MODERN SPECIES	3420									Nrn1 (ENSMSIG00000030265) #15	F13a1 (ENSMSIG00000030273) #16	ENSMSIG00000030279 #17	Rreb1 (ENSMSIG00000030286) #18	Ssr1 (ENSMSIG00000002117) #19	Cage1 (ENSMSIG00000002367) #20	Riok1 (ENSMSIG00000002490) #21	Dsp (ENSMSIG00000002602) #22	Snrnp48 (ENSMSIG00000002687) #23	Bmp6 (ENSMSIG00000002718) #24	Txndc5 (ENSMSIG00000002766) #25	Bloc1s5 (ENSMSIG00000002907) #26	ENSMSIG00000002981	Slc35b3 (ENSMSIG00000003005) #28	ENSMSIG00000003112 #29	ENSMSIG00000003171	Tfap2a (ENSMSIG00000003209) #31	ENSMSIG00000003566	ENSMSIG00000003578 #33	Pak1ip1 (ENSMSIG00000003627) #34	Tmem14c (ENSMSIG00000003687) #35	Mak (ENSMSIG00000003703) #36	Gcm2 (ENSMSIG00000004008) #37
Mouse	MODERN SPECIES	4	Tex56 (ENSMUSG00000021415)	Eci3 (ENSMUSG00000021416) #7	Eci2 (ENSMUSG00000021417) #7	Cdyl (ENSMUSG00000059288) #8	Rpp40 (ENSMUSG00000021418) #10	Ppp1r3g (ENSMUSG00000050423) #11	Lyrm4 (ENSMUSG00000046573) #12	Fars2 (ENSMUSG00000021420) #13	Nrn1 (ENSMUSG00000039114) #15	F13a1 (ENSMUSG00000039109) #16	Ly86 (ENSMUSG00000021423) #17	Rreb1 (ENSMUSG00000039087) #18	Ssr1 (ENSMUSG00000021427) #19	Cage1 (ENSMUSG00000044566) #20	Riok1 (ENSMUSG00000021428) #21	Dsp (ENSMUSG00000054889) #22	Snrnp48 (ENSMUSG00000021431) #23	Bmp6 (ENSMUSG00000039004) #24	Txndc5 (ENSMUSG00000038991) #25	Bloc1s5 (ENSMUSG00000038982) #26	Eef1e1 (ENSMUSG00000001707)	Slc35b3 (ENSMUSG00000021432) #28	Ofcc1 (ENSMUSG00000047094) #29	Tfap2a (ENSMUSG00000021359) #31	Gcnt2 (ENSMUSG00000021360)	Pak1ip1 (ENSMUSG00000038683) #34	Tmem14c (ENSMUSG00000021361) #35	Mak (ENSMUSG00000021363) #36	Gcm2 (ENSMUSG00000021362) #37	Sycp2l (ENSMUSG00000038651)	Elovl2 (ENSMUSG00000021364)
Ryukyu mouse	MODERN SPECIES	4	Tex56 (MGP_CAROLIEiJ_G0018425)	Eci3 (MGP_CAROLIEiJ_G0018426) #7	Eci2 (MGP_CAROLIEiJ_G0018427) #7	Cdyl (MGP_CAROLIEiJ_G0018428) #8	Rpp40 (MGP_CAROLIEiJ_G0018429) #10	Ppp1r3g (MGP_CAROLIEiJ_G0018430) #11	Lyrm4 (MGP_CAROLIEiJ_G0018431) #12	Fars2 (MGP_CAROLIEiJ_G0018432) #13	Nrn1 (MGP_CAROLIEiJ_G0018433) #15	F13a1 (MGP_CAROLIEiJ_G0018434) #16	Ly86 (MGP_CAROLIEiJ_G0018435) #17	Rreb1 (MGP_CAROLIEiJ_G0018436) #18	Ssr1 (MGP_CAROLIEiJ_G0018437) #19	Cage1 (MGP_CAROLIEiJ_G0018438) #20	Riok1 (MGP_CAROLIEiJ_G0018439) #21	Dsp (MGP_CAROLIEiJ_G0018440) #22	Snrnp48 (MGP_CAROLIEiJ_G0018441) #23	Bmp6 (MGP_CAROLIEiJ_G0018442) #24	Txndc5 (MGP_CAROLIEiJ_G0018443) #25	Bloc1s5 (MGP_CAROLIEiJ_G0018444) #26	Eef1e1 (MGP_CAROLIEiJ_G0018445)	Slc35b3 (MGP_CAROLIEiJ_G0018446) #28	Ofcc1 (MGP_CAROLIEiJ_G0018447) #29	MGP_CAROLIEiJ_G0018448	Tfap2a (MGP_CAROLIEiJ_G0018449) #31	MGP_CAROLIEiJ_G0018450 #33	Pak1ip1 (MGP_CAROLIEiJ_G0018451) #34	Tmem14c (MGP_CAROLIEiJ_G0018452) #35	Mak (MGP_CAROLIEiJ_G0018453) #36	Gcm2 (MGP_CAROLIEiJ_G0018454) #37	MGP_CAROLIEiJ_G0018455
Shrew mouse	MODERN SPECIES	7	Tex56 (MGP_PahariEiJ_G0019493)	Eci3 (MGP_PahariEiJ_G0019494) #7	Eci2 (MGP_PahariEiJ_G0019495) #7	Cdyl (MGP_PahariEiJ_G0019496) #8	Rpp40 (MGP_PahariEiJ_G0019497) #10	Ppp1r3g (MGP_PahariEiJ_G0019498) #11	Lyrm4 (MGP_PahariEiJ_G0019499) #12	Fars2 (MGP_PahariEiJ_G0019500) #13	Nrn1 (MGP_PahariEiJ_G0019501) #15	F13a1 (MGP_PahariEiJ_G0019502) #16	Ly86 (MGP_PahariEiJ_G0019503) #17	Rreb1 (MGP_PahariEiJ_G0019504) #18	Ssr1 (MGP_PahariEiJ_G0019505) #19	Cage1 (MGP_PahariEiJ_G0019506) #20	Riok1 (MGP_PahariEiJ_G0019507) #21	Dsp (MGP_PahariEiJ_G0019508) #22	Snrnp48 (MGP_PahariEiJ_G0019509) #23	Bmp6 (MGP_PahariEiJ_G0019510) #24	Txndc5 (MGP_PahariEiJ_G0019511) #25	Bloc1s5 (MGP_PahariEiJ_G0019512) #26	Eef1e1 (MGP_PahariEiJ_G0019513)	Slc35b3 (MGP_PahariEiJ_G0019514) #28	Ofcc1 (MGP_PahariEiJ_G0019515) #29	MGP_PahariEiJ_G0019516	Tfap2a (MGP_PahariEiJ_G0019517) #31	MGP_PahariEiJ_G0019518 #33	Pak1ip1 (MGP_PahariEiJ_G0019519) #34	Tmem14c (MGP_PahariEiJ_G0019520) #35	Mak (MGP_PahariEiJ_G0019521) #36	Gcm2 (MGP_PahariEiJ_G0019522) #37	MGP_PahariEiJ_G0019523
Rat	MODERN SPECIES	8	Eci3 (ENSRNOG00000029549) ##7	Eci2 (ENSRNOG00000066714) #7	Cdyl (ENSRNOG00000032215) #8	Rpp40 (ENSRNOG00000016226) #10	Ppp1r3g (ENSRNOG00000016222) #11	Lyrm4 (ENSRNOG00000047970) #12	Fars2 (ENSRNOG00000016135) #13	Nrn1 (ENSRNOG00000050767) #15	F13a1 (ENSRNOG00000015957) #16	Ly86 (ENSRNOG00000000137) #17	RGD1563601 (ENSRNOG00000031706)	Rreb1 (ENSRNOG00000015701) #18	Ssr1 (ENSRNOG00000014165) #19	Cage1 (ENSRNOG00000024111) #20	Riok1 (ENSRNOG00000014049) #21	Dsp (ENSRNOG00000013928) #22	Snrnp48 (ENSRNOG00000013756) #23	Bmp6 (ENSRNOG00000013717) #24	Txndc5 (ENSRNOG00000013469) #25	Bloc1s5 (ENSRNOG00000016497) #26	Eef1e1 (ENSRNOG00000066344)	Pole3-ps2 (ENSRNOG00000047910)	Slc35b3 (ENSRNOG00000016174) #28	Ofcc1 (ENSRNOG00000024499) #29	AABR07027339.1 (ENSRNOG00000059019)	LOC100362620 (ENSRNOG00000051034)	Tfap2a (ENSRNOG00000015522) #31	Gcnt2 (ENSRNOG00000023778)	C17h6orf52 (ENSRNOG00000039379)	Pak1ip1 (ENSRNOG00000023799) #34	Tmem14c (ENSRNOG00000015437) #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	764	Fam50b (ENSNGAG00000024017)	ENSNGAG00000009942	Prpf4b (ENSNGAG00000023322)	ENSNGAG00000020575 #7	Cdyl (ENSNGAG00000023764) #8	ENSNGAG00000023955 #10	Lyrm4 (ENSNGAG00000024207) #12	Fars2 (ENSNGAG00000021589) #13	Nrn1 (ENSNGAG00000018954) #15	F13a1 (ENSNGAG00000022897) #16	Ly86 (ENSNGAG00000011116) #17	Rreb1 (ENSNGAG00000021506) #18	Ssr1 (ENSNGAG00000021960) #19	Cage1 (ENSNGAG00000021871) #20	Riok1 (ENSNGAG00000021734) #21	Dsp (ENSNGAG00000020849) #22	Snrnp48 (ENSNGAG00000004849) #23	Bmp6 (ENSNGAG00000013966) #24	Txndc5 (ENSNGAG00000019460) #25	Bloc1s5 (ENSNGAG00000012995) #26	Eef1e1 (ENSNGAG00000005143)	Slc35b3 (ENSNGAG00000022583) #28	Ofcc1 (ENSNGAG00000002244) #29	Tfap2a (ENSNGAG00000023563) #31	Gcnt2 (ENSNGAG00000016858)	Pak1ip1 (ENSNGAG00000017816) #34	ENSNGAG00000020832 #35	Mak (ENSNGAG00000023440) #36	Gcm2 (ENSNGAG00000001132) #37	ENSNGAG00000023463	Elovl2 (ENSNGAG00000005955)
Lesser Egyptian jerboa	MODERN SPECIES	129	ENSJJAG00000010338	Tex56 (ENSJJAG00000008898)	ENSJJAG00000004231 #7	ENSJJAG00000001626	Cdyl (ENSJJAG00000000586) #8	Rpp40 (ENSJJAG00000020629) #10	Lyrm4 (ENSJJAG00000004657) #12	Fars2 (ENSJJAG00000002799) #13	Nrn1 (ENSJJAG00000000725) #15	F13a1 (ENSJJAG00000000070) #16	Ly86 (ENSJJAG00000022504) #17	Rreb1 (ENSJJAG00000019738) #18	Ssr1 (ENSJJAG00000018495) #19	ENSJJAG00000017011 #20	Riok1 (ENSJJAG00000015152) #21	Dsp (ENSJJAG00000014255) #22	Snrnp48 (ENSJJAG00000011495) #23	Bmp6 (ENSJJAG00000002261) #24	Txndc5 (ENSJJAG00000022365) #25	Bloc1s5 (ENSJJAG00000020329) #26	Eef1e1 (ENSJJAG00000019293)	Slc35b3 (ENSJJAG00000018963) #28	Ofcc1 (ENSJJAG00000017086) #29	Tfap2a (ENSJJAG00000015163) #31
Kangaroo rat	MODERN SPECIES	351	Slc22a23 (ENSDORG00000010217)	ENSDORG00000010216	Tubb2b (ENSDORG00000029767)	ENSDORG00000025335	ENSDORG00000030064	Bphl (ENSDORG00000012891)	Lyrm4 (ENSDORG00000029399) #12	Fars2 (ENSDORG00000014796) #13	Nrn1 (ENSDORG00000028098) #15	F13a1 (ENSDORG00000005435) #16	Ly86 (ENSDORG00000009360) #17	Rreb1 (ENSDORG00000006979) #18	Ssr1 (ENSDORG00000009319) #19	Cage1 (ENSDORG00000004490) #20	Riok1 (ENSDORG00000008530) #21	Dsp (ENSDORG00000000359) #22	Snrnp48 (ENSDORG00000015140) #23	Bmp6 (ENSDORG00000004681) #24	Txndc5 (ENSDORG00000004682) #25	ENSDORG00000027767 #26	ENSDORG00000015077	Slc35b3 (ENSDORG00000007915) #28	ENSDORG00000024425	Tfap2a (ENSDORG00000012263) #31	Gcnt2 (ENSDORG00000023790)	ENSDORG00000015069 #34	Tmem14c (ENSDORG00000029428) #35	Mak (ENSDORG00000003520) #36	Gcm2 (ENSDORG00000002244) #37	ENSDORG00000002247	Elovl2 (ENSDORG00000013468)
Rodentia_A	ANCESTRAL SPECIES	26	ENSGT00940000154543.b	ENSGT00390000008360	ENSGT00940000155105 #7	ENSGT00940000155106 #8	ENSGT00390000014167 #10	ENSGT00940000163747 #11	ENSGT00940000157289.a #12	ENSGT00940000158071 #13	ENSGT00530000063853.a.a.b #15	ENSGT01050000244939.a.a.a #16	ENSGT00390000018605 #17	ENSGT00940000157533 #18	ENSGT00400000022103.a #19	ENSGT00390000001805 #20	ENSGT00940000157075 #21	ENSGT00940000154843.F #22	ENSGT00390000004886 #23	ENSGT00940000158768 #24	ENSGT00940000156920 #25	ENSGT00390000016974 #26	ENSGT00390000003564	ENSGT00940000157040 #28	ENSGT00940000163681 #29	ENSGT00950000182848.c.b.a.a #31	ENSGT00940000156849	ENSGT00940000163315	ENSGT00390000001263 #34	ENSGT00940000154772 #35	ENSGT00940000156581 #36	ENSGT00390000006777.b #37	ENSGT00530000063859.a
Hystricomorpha	ANCESTRAL SPECIES	42	ENSGT00940000154543.b	ENSGT00390000008360	ENSGT00940000155105 #7	ENSGT00940000155106 #8	ENSGT00390000014167 #10	ENSGT00940000163747 #11	ENSGT00940000157289.a #12	ENSGT00940000158071 #13	ENSGT00530000063853.a.a.b #15	ENSGT01050000244939.a.a.a #16	ENSGT00390000018605 #17	ENSGT00940000157533 #18	ENSGT00400000022103.a #19	ENSGT00390000001805 #20	ENSGT00940000157075 #21	ENSGT00940000154843.F #22	ENSGT00390000004886 #23	ENSGT00940000158768 #24	ENSGT00940000156920 #25	ENSGT00390000016974 #26	ENSGT00390000003564	ENSGT00940000157040 #28	ENSGT00940000163681 #29	ENSGT00950000182848.c.b.a.a #31	ENSGT00940000156849	ENSGT00940000163315	ENSGT00390000001263 #34	ENSGT00940000154772 #35	ENSGT00940000156581 #36	ENSGT00390000006777.b #37	ENSGT00530000063859.a
Hystricomorpha_a	ANCESTRAL SPECIES	48	ENSGT00940000154543.b	ENSGT00390000008360	ENSGT00940000155105 #7	ENSGT00940000155106 #8	ENSGT00390000014167 #10	ENSGT00940000163747 #11	ENSGT00940000157289.a #12	ENSGT00940000158071 #13	ENSGT00530000063853.a.a.b #15	ENSGT01050000244939.a.a.a #16	ENSGT00390000018605 #17	ENSGT00940000157533 #18	ENSGT00400000022103.a #19	ENSGT00390000001805 #20	ENSGT00940000157075 #21	ENSGT00940000154843.F #22	ENSGT00390000004886 #23	ENSGT00940000158768 #24	ENSGT00940000156920 #25	ENSGT00390000016974 #26	ENSGT00390000003564	ENSGT00940000157040 #28	ENSGT00940000163681 #29	ENSGT00950000182848.c.b.a.a #31	ENSGT00940000156849	ENSGT00390000001263 #34	ENSGT00940000154772 #35	ENSGT00940000156581 #36	ENSGT00390000006777.b #37	ENSGT00530000063859.a	ENSGT01050000244838.C.a
Hystricomorpha_b	ANCESTRAL SPECIES	58	ENSGT00940000154543.b	ENSGT00390000008360	ENSGT00940000155105 #7	ENSGT00940000155106 #8	ENSGT00390000014167 #10	ENSGT00940000157289.a #12	ENSGT00940000170978	ENSGT00940000158071 #13	ENSGT00530000063853.a.a.b #15	ENSGT01050000244939.a.a.a #16	ENSGT00390000018605 #17	ENSGT00940000157533 #18	ENSGT00400000022103.a #19	ENSGT00390000001805 #20	ENSGT00940000157075 #21	ENSGT00940000154843.F #22	ENSGT00390000004886 #23	ENSGT00940000158768 #24	ENSGT00940000156920 #25	ENSGT00390000016974 #26	ENSGT00390000003564	ENSGT00940000157040 #28	ENSGT00940000163681 #29	ENSGT00950000182848.c.b.a.a #31	ENSGT00940000156849	ENSGT00390000001263 #34	ENSGT00940000154772 #35	ENSGT00940000156581 #36	ENSGT00390000006777.b #37	ENSGT00530000063859.a	ENSGT01050000244838.C.a
Long-tailed chinchilla	MODERN SPECIES	172	FAM217A (ENSCLAG00000004051)	ENSCLAG00000003863	ECI2 (ENSCLAG00000003560) #7	CDYL (ENSCLAG00000003356) #8	RPP40 (ENSCLAG00000003235) #10	PPP1R3G (ENSCLAG00000012673) #11	ENSCLAG00000011017	FARS2 (ENSCLAG00000017316) #13	NRN1 (ENSCLAG00000011260) #15	F13A1 (ENSCLAG00000003000) #16	LY86 (ENSCLAG00000002671) #17	RREB1 (ENSCLAG00000005266) #18	SSR1 (ENSCLAG00000004188) #19	CAGE1 (ENSCLAG00000003891) #20	RIOK1 (ENSCLAG00000003522) #21	DSP (ENSCLAG00000004641) #22	SNRNP48 (ENSCLAG00000003765) #23	BMP6 (ENSCLAG00000002609) #24	TXNDC5 (ENSCLAG00000002251) #25	BLOC1S5 (ENSCLAG00000001975) #26	EEF1E1 (ENSCLAG00000001917)	SLC35B3 (ENSCLAG00000006683) #28	ENSCLAG00000005976	ENSCLAG00000005254 #29	TFAP2A (ENSCLAG00000004001) #31	GCNT2 (ENSCLAG00000003303)	ENSCLAG00000003049	PAK1IP1 (ENSCLAG00000002755) #34	TMEM14C (ENSCLAG00000002593) #35	MAK (ENSCLAG00000002930) #36	GCM2 (ENSCLAG00000002483) #37
Degu	MODERN SPECIES	64	FAM217A (ENSODEG00000006489)	ECI2 (ENSODEG00000007068) #7	ENSODEG00000019345	CDYL (ENSODEG00000006073) #8	ENSODEG00000006170 #10	LYRM4 (ENSODEG00000005678) #12	ENSODEG00000019555	FARS2 (ENSODEG00000006881) #13	NRN1 (ENSODEG00000006426) #15	F13A1 (ENSODEG00000006301) #16	LY86 (ENSODEG00000005843) #17	RREB1 (ENSODEG00000007124) #18	SSR1 (ENSODEG00000008229) #19	CAGE1 (ENSODEG00000006091) #20	RIOK1 (ENSODEG00000005663) #21	DSP (ENSODEG00000005713) #22	ENSODEG00000005816 #23	BMP6 (ENSODEG00000005281) #24	ENSODEG00000006265 #25	BLOC1S5 (ENSODEG00000006076) #26	ENSODEG00000005927	SLC35B3 (ENSODEG00000007641) #28	ENSODEG00000007038 #29	ENSODEG00000005512	TFAP2A (ENSODEG00000005218) #31	GCNT2 (ENSODEG00000007522)	PAK1IP1 (ENSODEG00000005826) #34	ENSODEG00000005403 #35	MAK (ENSODEG00000006066) #36	GCM2 (ENSODEG00000005824) #37	ENSODEG00000005423
Guinea pig	MODERN SPECIES	38	FAM50B (ENSCPOG00000000148)	PRPF4B (ENSCPOG00000004775)	ECI2 (ENSCPOG00000004788) #7	CDYL (ENSCPOG00000005847) #8	RPP40 (ENSCPOG00000005855) #10	LYRM4 (ENSCPOG00000038899) #12	FARS2 (ENSCPOG00000003994) #13	NRN1 (ENSCPOG00000021547) #15	F13A1 (ENSCPOG00000005276) #16	LY86 (ENSCPOG00000012001) #17	RREB1 (ENSCPOG00000014380) #18	SSR1 (ENSCPOG00000039953) #19	CAGE1 (ENSCPOG00000009875) #20	ENSCPOG00000036973	RIOK1 (ENSCPOG00000009882) #21	DSP (ENSCPOG00000007895) #22	SNRNP48 (ENSCPOG00000007910) #23	BMP6 (ENSCPOG00000014575) #24	TXNDC5 (ENSCPOG00000014577) #25	BLOC1S5 (ENSCPOG00000038757) #26	EEF1E1 (ENSCPOG00000032494)	SLC35B3 (ENSCPOG00000010313) #28	ENSCPOG00000031842 #29	TFAP2A (ENSCPOG00000000121) #31	GCNT2 (ENSCPOG00000033639)	PAK1IP1 (ENSCPOG00000035088) #34	TMEM14C (ENSCPOG00000007383) #35	MAK (ENSCPOG00000001694) #36	GCM2 (ENSCPOG00000011254) #37	ENSCPOG00000011255	ELOVL2 (ENSCPOG00000008140)
Naked mole-rat female	MODERN SPECIES	28	PPP1R3G (ENSHGLG00000041006) #11	ENSHGLG00000038262	ENSHGLG00000004389 #13	ENSHGLG00000020343	ENSHGLG00000036093	ENSHGLG00000049115	ENSHGLG00000035907	ENSHGLG00000035488 #15	ENSHGLG00000034596	ENSHGLG00000004262 #16	LY86 (ENSHGLG00000004184) #17	RREB1 (ENSHGLG00000015266) #18	SSR1 (ENSHGLG00000009378) #19	CAGE1 (ENSHGLG00000009035) #20	RIOK1 (ENSHGLG00000008699) #21	DSP (ENSHGLG00000008359) #22	ENSHGLG00000045182	SNRNP48 (ENSHGLG00000015241) #23	BMP6 (ENSHGLG00000015229) #24	TXNDC5 (ENSHGLG00000019336) #25	BLOC1S5 (ENSHGLG00000050190) #26	EEF1E1 (ENSHGLG00000051014)	ENSHGLG00000017811	SLC35B3 (ENSHGLG00000017775) #28	ENSHGLG00000035290	ENSHGLG00000044940	ENSHGLG00000032559	TFAP2A (ENSHGLG00000039316) #31	ENSHGLG00000041562	C6orf52 (ENSHGLG00000017556)	PAK1IP1 (ENSHGLG00000048467) #34
Sciuridae	ANCESTRAL SPECIES	1	ENSGT00940000154543.b	ENSGT00390000008360	ENSGT00940000155105 #7	ENSGT00940000155106 #8	ENSGT00390000014167 #10	ENSGT00940000163747 #11	ENSGT00940000157289.a #12	ENSGT00940000158071 #13	ENSGT00530000063853.a.a.b #15	ENSGT01050000244939.a.a.a #16	ENSGT00390000018605 #17	ENSGT00940000157533 #18	ENSGT00400000022103.a #19	ENSGT00390000001805 #20	ENSGT00940000157075 #21	ENSGT00940000154843.F #22	ENSGT00390000004886 #23	ENSGT00940000158768 #24	ENSGT00940000156920 #25	ENSGT00390000016974 #26	ENSGT00390000003564	ENSGT00940000157040 #28	ENSGT00940000163681 #29	ENSGT00950000182848.c.b.a.a #31	ENSGT00940000156849	ENSGT00990000204394	ENSGT00940000163315	ENSGT00390000001263 #34	ENSGT00940000154772.cb #35	ENSGT00940000156581 #36	ENSGT00390000006777.b #37
Marmotini	ANCESTRAL SPECIES	40	ENSGT00940000154543.b	ENSGT00390000008360	ENSGT00940000155105 #7	ENSGT00940000155106 #8	ENSGT00390000014167 #10	ENSGT00940000163747 #11	ENSGT00940000157289.a #12	ENSGT00940000158071 #13	ENSGT00530000063853.a.a.b #15	ENSGT01050000244939.a.a.a #16	ENSGT00390000018605 #17	ENSGT00940000157533 #18	ENSGT00400000022103.a #19	ENSGT00390000001805 #20	ENSGT00940000157075 #21	ENSGT00940000154843.F #22	ENSGT00390000004886 #23	ENSGT00940000158768 #24	ENSGT00940000156920 #25	ENSGT00390000016974 #26	ENSGT00390000003564	ENSGT00940000157040 #28	ENSGT00940000163681 #29	ENSGT00950000182848.c.b.a.a #31	ENSGT00940000156849	ENSGT00940000163315	ENSGT00390000001263 #34	ENSGT00940000154772.cb #35	ENSGT00940000156581 #36	ENSGT00390000006777.b #37	ENSGT00530000063859.a
Marmotini_b	ANCESTRAL SPECIES	68	ENSGT00940000154543.b	ENSGT00390000008360	ENSGT00940000155105 #7	ENSGT00940000155106 #8	ENSGT00390000014167 #10	ENSGT00940000163747 #11	ENSGT00940000157289.a #12	ENSGT00940000158071 #13	ENSGT00530000063853.a.a.b #15	ENSGT01050000244939.a.a.a #16	ENSGT00390000018605 #17	ENSGT00940000157533 #18	ENSGT00400000022103.a #19	ENSGT00390000001805 #20	ENSGT00940000157075 #21	ENSGT00940000154843.F #22	ENSGT00390000004886 #23	ENSGT00940000158768 #24	ENSGT00940000156920 #25	ENSGT00390000016974 #26	ENSGT00390000003564	ENSGT00940000157040 #28	ENSGT00940000163681 #29	ENSGT00950000182848.c.b.a.a #31	ENSGT00940000156849	ENSGT00390000001263 #34	ENSGT00940000154772.cb #35	ENSGT00940000156581 #36	ENSGT00390000006777.b #37	ENSGT00530000063859.a	ENSGT01050000244838.C.a
Squirrel	MODERN SPECIES	134	FAM217A (ENSSTOG00000030768)	ENSSTOG00000030065	ECI2 (ENSSTOG00000004305) #7	CDYL (ENSSTOG00000011187) #8	RPP40 (ENSSTOG00000011199) #10	PPP1R3G (ENSSTOG00000021636) #11	LYRM4 (ENSSTOG00000026736) #12	FARS2 (ENSSTOG00000012156) #13	ENSSTOG00000024647 #15	F13A1 (ENSSTOG00000003326) #16	LY86 (ENSSTOG00000015443) #17	RREB1 (ENSSTOG00000020497) #18	ENSSTOG00000022608 #19	CAGE1 (ENSSTOG00000009267) #20	RIOK1 (ENSSTOG00000009289) #21	DSP (ENSSTOG00000014616) #22	SNRNP48 (ENSSTOG00000014635) #23	BMP6 (ENSSTOG00000028916) #24	TXNDC5 (ENSSTOG00000019465) #25	BLOC1S5 (ENSSTOG00000027342) #26	EEF1E1 (ENSSTOG00000026617)	SLC35B3 (ENSSTOG00000001201) #28	ENSSTOG00000028175 #29	ENSSTOG00000014334	TFAP2A (ENSSTOG00000019865) #31	GCNT2 (ENSSTOG00000025970)	PAK1IP1 (ENSSTOG00000027900) #34	ENSSTOG00000022833 #35	MAK (ENSSTOG00000009548) #36	GCM2 (ENSSTOG00000009563) #37	ENSSTOG00000009224
Arctic ground squirrel	MODERN SPECIES	31												ENSUPAG00010014689 #18	SSR1 (ENSUPAG00010014698) #19	CAGE1 (ENSUPAG00010014747) #20	RIOK1 (ENSUPAG00010014798) #21	DSP (ENSUPAG00010015511) #22	SNRNP48 (ENSUPAG00010015572) #23	BMP6 (ENSUPAG00010015582) #24	TXNDC5 (ENSUPAG00010015593) #25	BLOC1S5 (ENSUPAG00010015784) #26	SLC35B3 (ENSUPAG00010015809) #28	ENSUPAG00010015840 #29	ENSUPAG00010015910	TFAP2A (ENSUPAG00010015928) #31	GCNT2 (ENSUPAG00010016009)	PAK1IP1 (ENSUPAG00010016032) #34	TMEM14C (ENSUPAG00010016057) #35	MAK (ENSUPAG00010016076) #36	GCM2 (ENSUPAG00010016186) #37	ELOVL2 (ENSUPAG00010016252)	SMIM13 (ENSUPAG00010016295)
Alpin marmot	MODERN SPECIES	36	FAM217A (ENSMMMG00000014281)	ENSMMMG00000014296	ECI2 (ENSMMMG00000014301) #7	CDYL (ENSMMMG00000014357) #8	RPP40 (ENSMMMG00000014521) #10	PPP1R3G (ENSMMMG00000014548) #11	LYRM4 (ENSMMMG00000014551) #12	FARS2 (ENSMMMG00000014567) #13	NRN1 (ENSMMMG00000014586) #15	F13A1 (ENSMMMG00000014594) #16	LY86 (ENSMMMG00000014644) #17	RREB1 (ENSMMMG00000014665) #18	SSR1 (ENSMMMG00000014761) #19	CAGE1 (ENSMMMG00000014786) #20	RIOK1 (ENSMMMG00000014815) #21	DSP (ENSMMMG00000014849) #22	SNRNP48 (ENSMMMG00000014886) #23	BMP6 (ENSMMMG00000014898) #24	TXNDC5 (ENSMMMG00000014905) #25	BLOC1S5 (ENSMMMG00000014923) #26	EEF1E1 (ENSMMMG00000014929)	SLC35B3 (ENSMMMG00000014936) #28	ENSMMMG00000014956	ENSMMMG00000014969 #29	ENSMMMG00000014989	TFAP2A (ENSMMMG00000014996) #31	ENSMMMG00000015030	GCNT2 (ENSMMMG00000015036)	ENSMMMG00000015056	C6orf52 (ENSMMMG00000015079)	PAK1IP1 (ENSMMMG00000015091) #34
Eurasian red squirrel	MODERN SPECIES	16	ENSSVLG00005007999	ECI2 (ENSSVLG00005008033) #7	CDYL (ENSSVLG00005008158) #8	RPP40 (ENSSVLG00005008216) #10	PPP1R3G (ENSSVLG00005008297) #11	LYRM4 (ENSSVLG00005008312) #12	ENSSVLG00005008346	FARS2 (ENSSVLG00005008373) #13	NRN1 (ENSSVLG00005008393) #15	F13A1 (ENSSVLG00005008423) #16	LY86 (ENSSVLG00005008500) #17	RREB1 (ENSSVLG00005008541) #18	SSR1 (ENSSVLG00005008603) #19	CAGE1 (ENSSVLG00005008923) #20	RIOK1 (ENSSVLG00005009274) #21	DSP (ENSSVLG00005009323) #22	SNRNP48 (ENSSVLG00005009588) #23	BMP6 (ENSSVLG00005009631) #24	TXNDC5 (ENSSVLG00005009663) #25	BLOC1S5 (ENSSVLG00005009718) #26	ENSSVLG00005009767	ENSSVLG00005009805 #28	ENSSVLG00005009939 #28	ENSSVLG00005010019 #29	ENSSVLG00005010165	TFAP2A (ENSSVLG00005010218) #31	GCNT2 (ENSSVLG00005010366)	ENSSVLG00005010435	PAK1IP1 (ENSSVLG00005010469) #34	ENSSVLG00005010503 #35	MAK (ENSSVLG00005010599) #36
Lagomorpha	ANCESTRAL SPECIES	58	ENSGT00940000155562	ENSGT00940000154543.b	ENSGT00390000008360	ENSGT00940000155105 #7	ENSGT00940000155106 #8	ENSGT00390000014167 #10	ENSGT00940000157289.a #12	ENSGT00940000158071 #13	ENSGT00530000063853.a.a.b #15	ENSGT01050000244939.a.a.a #16	ENSGT00390000018605 #17	ENSGT00940000157533 #18	ENSGT00400000022103.a #19	ENSGT00390000001805 #20	ENSGT00940000157075 #21	ENSGT00940000154843.F #22	ENSGT00390000004886 #23	ENSGT00940000158768 #24	ENSGT00940000156920 #25	ENSGT00390000016974 #26	ENSGT00390000003564	ENSGT00940000157040 #28	ENSGT00940000163681 #29	ENSGT00940000163455	ENSGT00950000182848.c.b.a.a #31	ENSGT00940000156849	ENSGT00990000204394	ENSGT00390000001263 #34	ENSGT00940000154772 #35	ENSGT00940000156581 #36	ENSGT00390000006777.b #37
Rabbit	MODERN SPECIES	3										ENSOCUG00000021436 #16	LY86 (ENSOCUG00000006381) #17	RREB1 (ENSOCUG00000022117) #18	SSR1 (ENSOCUG00000009083) #19	CAGE1 (ENSOCUG00000009089) #20	RIOK1 (ENSOCUG00000011824) #21	DSP (ENSOCUG00000013150) #22	SNRNP48 (ENSOCUG00000005168) #23	BMP6 (ENSOCUG00000003431) #24	TXNDC5 (ENSOCUG00000023055) #25	BLOC1S5 (ENSOCUG00000025755) #26	EEF1E1 (ENSOCUG00000012587)	ENSOCUG00000036458	SLC35B3 (ENSOCUG00000003401) #28	ENSOCUG00000025875	ENSOCUG00000022374	ENSOCUG00000030969 #29	ENSOCUG00000016635	ENSOCUG00000005315 #31	ENSOCUG00000022471	ENSOCUG00000036722	ENSOCUG00000014369
Pika	MODERN SPECIES	5178																DSP (ENSOPRG00000015413) #22	SNRNP48 (ENSOPRG00000015471) #23