Murinae	ANCESTRAL SPECIES	13	ENSGT00510000047914.b	ENSGT00940000162172 #7	ENSGT00940000156311 #9	ENSGT00900000143836 #8	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #24	ENSGT01050000244976.b.a #25	ENSGT00940000156634 #26	ENSGT00940000160327 #27	ENSGT00940000159448 #29	ENSGT00550000074851 #30	ENSGT00940000159619.a #31	ENSGT00940000163072 #32	ENSGT00940000161771 #33	ENSGT00940000162953 #34	ENSGT00940000155941.A #35	ENSGT00390000018718	ENSGT00940000156442	ENSGT00940000161593	ENSGT00940000158154
Rat	MODERN SPECIES	2	Rtp2 (ENSRNOG00000022160) #7	Gm37419 (ENSRNOG00000069169) #8	Bcl6 (ENSRNOG00000001843) #9	LOC100365839 (ENSRNOG00000048109) #10	Lpp (ENSRNOG00000031669) #11	Tprg1 (ENSRNOG00000063970) #12	Tp63 (ENSRNOG00000001924) #13	P3h2 (ENSRNOG00000055751) #14	Cldn1 (ENSRNOG00000001926) #15	Cldn16 (ENSRNOG00000055138) #16	Tmem207 (ENSRNOG00000064931) #17	Il1rap (ENSRNOG00000001928) #18	Gmnc (ENSRNOG00000038505) #19	Ostn (ENSRNOG00000030462) #20	Uts2b (ENSRNOG00000038512) #21	Ccdc50 (ENSRNOG00000001930) #22	ENSRNOG00000067098 #23	Fgf12 (ENSRNOG00000001931) #24	Mb21d2 (ENSRNOG00000024040) #25	Plaat1 (ENSRNOG00000001711) #26	Atp13a5 (ENSRNOG00000024127) #27	Il13ra1 (ENSRNOG00000001713) #28	Atp13a4 (ENSRNOG00000001714) #29	Opa1 (ENSRNOG00000001717) #30	Hes1 (ENSRNOG00000001720) #31	Cpn2 (ENSRNOG00000024384) #32	Lrrc15 (ENSRNOG00000068415) #33	Gp5 (ENSRNOG00000038540) #34	Atp13a3 (ENSRNOG00000066681) #35	RGD1562415 (ENSRNOG00000052877) #36	ENSRNOG00000064503 #37
Mus	ANCESTRAL SPECIES	13	ENSGT00510000047914.b	ENSGT00940000162172 #7	ENSGT00940000156311 #9	ENSGT00900000143836 #8	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #24	ENSGT01050000244976.b.a #25	ENSGT00940000156634 #26	ENSGT00940000160327 #27	ENSGT00940000159448 #29	ENSGT00550000074851 #30	ENSGT00940000159619.a #31	ENSGT00940000163072 #32	ENSGT00940000161771 #33	ENSGT00940000162953 #34	ENSGT00940000155941.A #35	ENSGT00390000018718	ENSGT00940000156442	ENSGT00940000161593	ENSGT00940000158154
Mus_A	ANCESTRAL SPECIES	18	ENSGT00510000047914.b	ENSGT00940000162172 #7	ENSGT00940000156311 #9	ENSGT00900000143836 #8	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #24	ENSGT01050000244976.b.a #25	ENSGT00940000156634 #26	ENSGT00940000160327 #27	ENSGT00940000159448 #29	ENSGT00550000074851 #30	ENSGT00940000159619.a #31	ENSGT00940000163072 #32	ENSGT00940000161771 #33	ENSGT00940000162953 #34	ENSGT00940000155941.A #35	ENSGT00390000018718	ENSGT00940000156442	ENSGT00940000161593	ENSGT00940000158154
Mus_B	ANCESTRAL SPECIES	18	ENSGT00510000047914.b	ENSGT00940000162172 #7	ENSGT00940000156311 #9	ENSGT00900000143836 #8	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #24	ENSGT01050000244976.b.a #25	ENSGT00940000156634 #26	ENSGT00940000160327 #27	ENSGT00940000159448 #29	ENSGT00550000074851 #30	ENSGT00940000159619.a #31	ENSGT00940000163072 #32	ENSGT00940000161771 #33	ENSGT00940000162953 #34	ENSGT00940000155941.A #35	ENSGT00390000018718	ENSGT00940000156442	ENSGT00940000161593	ENSGT00940000158154
Mouse	MODERN SPECIES	7	Sst (ENSMUSG00000004366)	Rtp2 (ENSMUSG00000047531) #7	Bcl6 (ENSMUSG00000022508) #9	Gm37419 (ENSMUSG00000110291) #8	Lpp (ENSMUSG00000033306) #11	Tprg (ENSMUSG00000048399) #12	Trp63 (ENSMUSG00000022510) #13	P3h2 (ENSMUSG00000038168) #14	Cldn1 (ENSMUSG00000022512) #15	Cldn16 (ENSMUSG00000038148) #16	Tmem207 (ENSMUSG00000091972) #17	Il1rap (ENSMUSG00000022514) #18	Gmnc (ENSMUSG00000068428) #19	Ostn (ENSMUSG00000052276) #20	Uts2b (ENSMUSG00000056423) #21	Ccdc50 (ENSMUSG00000038127) #22	Fgf12 (ENSMUSG00000022523) #24	Mb21d2 (ENSMUSG00000051065) #25	Plaat1 (ENSMUSG00000022525) #26	Atp13a5 (ENSMUSG00000048939) #27	Atp13a4 (ENSMUSG00000038094) #29	Opa1 (ENSMUSG00000038084) #30	Hes1 (ENSMUSG00000022528) #31	Cpn2 (ENSMUSG00000023176) #32	Lrrc15 (ENSMUSG00000052316) #33	Gp5 (ENSMUSG00000047953) #34	Atp13a3 (ENSMUSG00000022533) #35	Tmem44 (ENSMUSG00000022537)	Lsg1 (ENSMUSG00000022538)	Fam43a (ENSMUSG00000046546)	Xxylt1 (ENSMUSG00000047434)
Mus_C	ANCESTRAL SPECIES	12	ENSGT00940000162610	ENSGT00510000047914.b	ENSGT00940000162172 #7	ENSGT00940000156311 #9	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #24	ENSGT01050000244976.b.a #25	ENSGT00940000156634 #26	ENSGT00940000160327 #27	ENSGT00940000159448 #29	ENSGT00550000074851 #30	ENSGT00940000159619.a #31	ENSGT00940000163072 #32	ENSGT00940000161771 #33	ENSGT00940000162953 #34	ENSGT00940000155941.A #35	ENSGT00390000018718	ENSGT00940000156442	ENSGT00940000161593	ENSGT00940000158154
Steppe mouse	MODERN SPECIES	75						Tprg (ENSMSIG00000008932) #12	Trp63 (ENSMSIG00000007986) #13	P3h2 (ENSMSIG00000007958) #14	Cldn1 (ENSMSIG00000007944) #15	Cldn16 (ENSMSIG00000007933) #16	Tmem207 (ENSMSIG00000007915) #17	Il1rap (ENSMSIG00000007880) #18	Gmnc (ENSMSIG00000007759) #19	Ostn (ENSMSIG00000007748) #20	Uts2b (ENSMSIG00000007715) #21	Ccdc50 (ENSMSIG00000007628) #22	ENSMSIG00000007596	Fgf12 (ENSMSIG00000007454) #24	Mb21d2 (ENSMSIG00000007424) #25	Plaat1 (ENSMSIG00000007402) #26	Atp13a5 (ENSMSIG00000007166) #27	Atp13a4 (ENSMSIG00000006926) #29	Opa1 (ENSMSIG00000006813) #30	Hes1 (ENSMSIG00000006747) #31	Cpn2 (ENSMSIG00000006697) #32	Lrrc15 (ENSMSIG00000006684) #33	Gp5 (ENSMSIG00000006670) #34	Atp13a3 (ENSMSIG00000006391) #35	ENSMSIG00000006328	Lsg1 (ENSMSIG00000006264)	Fam43a (ENSMSIG00000006252)
spretus	MODERN SPECIES	7	Rtp4 (MGP_SPRETEiJ_G0021515)	Sst (MGP_SPRETEiJ_G0021516)	Rtp2 (MGP_SPRETEiJ_G0021517) #7	Bcl6 (MGP_SPRETEiJ_G0021518) #9	Lpp (MGP_SPRETEiJ_G0021519) #11	Tprg (MGP_SPRETEiJ_G0021520) #12	Trp63 (MGP_SPRETEiJ_G0021521) #13	P3h2 (MGP_SPRETEiJ_G0021522) #14	Cldn1 (MGP_SPRETEiJ_G0021523) #15	Cldn16 (MGP_SPRETEiJ_G0021524) #16	Tmem207 (MGP_SPRETEiJ_G0021525) #17	Il1rap (MGP_SPRETEiJ_G0021526) #18	Gmnc (MGP_SPRETEiJ_G0021527) #19	Ostn (MGP_SPRETEiJ_G0021528) #20	Uts2b (MGP_SPRETEiJ_G0021529) #21	MGP_SPRETEiJ_G0021530 #22	Fgf12 (MGP_SPRETEiJ_G0021531) #24	Mb21d2 (MGP_SPRETEiJ_G0021532) #25	Plaat1 (MGP_SPRETEiJ_G0021533) #26	Atp13a5 (MGP_SPRETEiJ_G0021534) #27	Atp13a4 (MGP_SPRETEiJ_G0021535) #29	Opa1 (MGP_SPRETEiJ_G0021536) #30	MGP_SPRETEiJ_G0021537	Hes1 (MGP_SPRETEiJ_G0021538) #31	Cpn2 (MGP_SPRETEiJ_G0021539) #32	Lrrc15 (MGP_SPRETEiJ_G0021540) #33	Gp5 (MGP_SPRETEiJ_G0021541) #34	Atp13a3 (MGP_SPRETEiJ_G0021542) #35	Tmem44 (MGP_SPRETEiJ_G0021543)	Lsg1 (MGP_SPRETEiJ_G0021544)	Fam43a (MGP_SPRETEiJ_G0021545)
Ryukyu mouse	MODERN SPECIES	7	MGP_CAROLIEiJ_G0020619	Sst (MGP_CAROLIEiJ_G0020620)	Rtp2 (MGP_CAROLIEiJ_G0020621) #7	Bcl6 (MGP_CAROLIEiJ_G0020622) #9	Lpp (MGP_CAROLIEiJ_G0020623) #11	Tprg (MGP_CAROLIEiJ_G0020624) #12	Trp63 (MGP_CAROLIEiJ_G0020625) #13	P3h2 (MGP_CAROLIEiJ_G0020626) #14	Cldn1 (MGP_CAROLIEiJ_G0020627) #15	Cldn16 (MGP_CAROLIEiJ_G0020628) #16	Tmem207 (MGP_CAROLIEiJ_G0020629) #17	Il1rap (MGP_CAROLIEiJ_G0020630) #18	Gmnc (MGP_CAROLIEiJ_G0020631) #19	Ostn (MGP_CAROLIEiJ_G0020632) #20	MGP_CAROLIEiJ_G0020633 #21	MGP_CAROLIEiJ_G0020634 #22	Fgf12 (MGP_CAROLIEiJ_G0020635) #24	Mb21d2 (MGP_CAROLIEiJ_G0020636) #25	Plaat1 (MGP_CAROLIEiJ_G0020637) #26	Atp13a5 (MGP_CAROLIEiJ_G0020638) #27	Atp13a4 (MGP_CAROLIEiJ_G0020639) #29	Opa1 (MGP_CAROLIEiJ_G0020640) #30	MGP_CAROLIEiJ_G0020641	Hes1 (MGP_CAROLIEiJ_G0020642) #31	Cpn2 (MGP_CAROLIEiJ_G0020643) #32	Lrrc15 (MGP_CAROLIEiJ_G0020644) #33	Gp5 (MGP_CAROLIEiJ_G0020645) #34	Atp13a3 (MGP_CAROLIEiJ_G0020646) #35	Tmem44 (MGP_CAROLIEiJ_G0020647)	Lsg1 (MGP_CAROLIEiJ_G0020648)	Fam43a (MGP_CAROLIEiJ_G0020649)
Shrew mouse	MODERN SPECIES	3	MGP_PahariEiJ_G0016324	Sst (MGP_PahariEiJ_G0016325)	Rtp2 (MGP_PahariEiJ_G0016326) #7	Bcl6 (MGP_PahariEiJ_G0016327) #9	Lpp (MGP_PahariEiJ_G0016328) #11	Tprg (MGP_PahariEiJ_G0016329) #12	Trp63 (MGP_PahariEiJ_G0016330) #13	P3h2 (MGP_PahariEiJ_G0016331) #14	Cldn1 (MGP_PahariEiJ_G0016332) #15	Cldn16 (MGP_PahariEiJ_G0016333) #16	Tmem207 (MGP_PahariEiJ_G0016334) #17	Il1rap (MGP_PahariEiJ_G0016335) #18	Gmnc (MGP_PahariEiJ_G0016336) #19	Ostn (MGP_PahariEiJ_G0016337) #20	Uts2b (MGP_PahariEiJ_G0016338) #21	MGP_PahariEiJ_G0016339 #22	Fgf12 (MGP_PahariEiJ_G0016340) #24	Mb21d2 (MGP_PahariEiJ_G0016341) #25	Plaat1 (MGP_PahariEiJ_G0016342) #26	Atp13a5 (MGP_PahariEiJ_G0016343) #27	Atp13a4 (MGP_PahariEiJ_G0016344) #29	Opa1 (MGP_PahariEiJ_G0016345) #30	Hes1 (MGP_PahariEiJ_G0016346) #31	Cpn2 (MGP_PahariEiJ_G0016347) #32	Lrrc15 (MGP_PahariEiJ_G0016348) #33	Gp5 (MGP_PahariEiJ_G0016349) #34	Atp13a3 (MGP_PahariEiJ_G0016350) #35	Tmem44 (MGP_PahariEiJ_G0016351)	Lsg1 (MGP_PahariEiJ_G0016352)	Fam43a (MGP_PahariEiJ_G0016353)	Xxylt1 (MGP_PahariEiJ_G0016354)