Eutheria	ANCESTRAL SPECIES	5	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00560000078510	ENSGT00940000156311 #9	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT01030000234960	ENSGT00940000161593 #36
Boreoeutheria	ANCESTRAL SPECIES	2	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT01030000234960
Euarchontoglires	ANCESTRAL SPECIES	2	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36
Euarchontoglires_A	ANCESTRAL SPECIES	2	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36
Glires	ANCESTRAL SPECIES	2	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36
Rodentia	ANCESTRAL SPECIES	2	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36
Rodentia_B	ANCESTRAL SPECIES	2	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00900000143836 #10	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36	ENSGT00940000158154 #37
Myomorpha	ANCESTRAL SPECIES	14	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00900000143836 #10	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36	ENSGT00940000158154 #37
Muroidea	ANCESTRAL SPECIES	11	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00900000143836 #10	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36	ENSGT00940000158154 #37
Muroidea_A	ANCESTRAL SPECIES	17	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00900000143836 #10	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36	ENSGT00940000158154 #37
Murinae	ANCESTRAL SPECIES	13	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00900000143836 #10	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36	ENSGT00940000158154 #37
Mus	ANCESTRAL SPECIES	13	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00900000143836 #10	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36	ENSGT00940000158154 #37
Mus_A	ANCESTRAL SPECIES	18	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00900000143836 #10	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36	ENSGT00940000158154 #37
Mus_B	ANCESTRAL SPECIES	18	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00900000143836 #10	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36	ENSGT00940000158154 #37
Mouse	MODERN SPECIES	7	Sst (ENSMUSG00000004366) #7	Rtp2 (ENSMUSG00000047531) #8	Bcl6 (ENSMUSG00000022508) #9	Gm37419 (ENSMUSG00000110291) #10	Lpp (ENSMUSG00000033306) #11	Tprg (ENSMUSG00000048399) #12	Trp63 (ENSMUSG00000022510) #13	P3h2 (ENSMUSG00000038168) #14	Cldn1 (ENSMUSG00000022512) #15	Cldn16 (ENSMUSG00000038148) #16	Tmem207 (ENSMUSG00000091972) #17	Il1rap (ENSMUSG00000022514) #18	Gmnc (ENSMUSG00000068428) #19	Ostn (ENSMUSG00000052276) #20	Uts2b (ENSMUSG00000056423) #21	Ccdc50 (ENSMUSG00000038127) #22	Fgf12 (ENSMUSG00000022523) #23	Mb21d2 (ENSMUSG00000051065) #24	Plaat1 (ENSMUSG00000022525) #25	Atp13a5 (ENSMUSG00000048939) #26	Atp13a4 (ENSMUSG00000038094) #27	Opa1 (ENSMUSG00000038084) #28	Hes1 (ENSMUSG00000022528) #29	Cpn2 (ENSMUSG00000023176) #30	Lrrc15 (ENSMUSG00000052316) #31	Gp5 (ENSMUSG00000047953) #32	Atp13a3 (ENSMUSG00000022533) #33	Tmem44 (ENSMUSG00000022537) #34	Lsg1 (ENSMUSG00000022538) #35	Fam43a (ENSMUSG00000046546) #36	Xxylt1 (ENSMUSG00000047434) #37
Mus_C	ANCESTRAL SPECIES	12	ENSGT00940000162610	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36	ENSGT00940000158154 #37
Steppe mouse	MODERN SPECIES	75						Tprg (ENSMSIG00000008932) #12	Trp63 (ENSMSIG00000007986) #13	P3h2 (ENSMSIG00000007958) #14	Cldn1 (ENSMSIG00000007944) #15	Cldn16 (ENSMSIG00000007933) #16	Tmem207 (ENSMSIG00000007915) #17	Il1rap (ENSMSIG00000007880) #18	Gmnc (ENSMSIG00000007759) #19	Ostn (ENSMSIG00000007748) #20	Uts2b (ENSMSIG00000007715) #21	Ccdc50 (ENSMSIG00000007628) #22	ENSMSIG00000007596	Fgf12 (ENSMSIG00000007454) #23	Mb21d2 (ENSMSIG00000007424) #24	Plaat1 (ENSMSIG00000007402) #25	Atp13a5 (ENSMSIG00000007166) #26	Atp13a4 (ENSMSIG00000006926) #27	Opa1 (ENSMSIG00000006813) #28	Hes1 (ENSMSIG00000006747) #29	Cpn2 (ENSMSIG00000006697) #30	Lrrc15 (ENSMSIG00000006684) #31	Gp5 (ENSMSIG00000006670) #32	Atp13a3 (ENSMSIG00000006391) #33	ENSMSIG00000006328 #34	Lsg1 (ENSMSIG00000006264) #35	Fam43a (ENSMSIG00000006252) #36
spretus	MODERN SPECIES	7	Rtp4 (MGP_SPRETEiJ_G0021515)	Sst (MGP_SPRETEiJ_G0021516) #7	Rtp2 (MGP_SPRETEiJ_G0021517) #8	Bcl6 (MGP_SPRETEiJ_G0021518) #9	Lpp (MGP_SPRETEiJ_G0021519) #11	Tprg (MGP_SPRETEiJ_G0021520) #12	Trp63 (MGP_SPRETEiJ_G0021521) #13	P3h2 (MGP_SPRETEiJ_G0021522) #14	Cldn1 (MGP_SPRETEiJ_G0021523) #15	Cldn16 (MGP_SPRETEiJ_G0021524) #16	Tmem207 (MGP_SPRETEiJ_G0021525) #17	Il1rap (MGP_SPRETEiJ_G0021526) #18	Gmnc (MGP_SPRETEiJ_G0021527) #19	Ostn (MGP_SPRETEiJ_G0021528) #20	Uts2b (MGP_SPRETEiJ_G0021529) #21	MGP_SPRETEiJ_G0021530 #22	Fgf12 (MGP_SPRETEiJ_G0021531) #23	Mb21d2 (MGP_SPRETEiJ_G0021532) #24	Plaat1 (MGP_SPRETEiJ_G0021533) #25	Atp13a5 (MGP_SPRETEiJ_G0021534) #26	Atp13a4 (MGP_SPRETEiJ_G0021535) #27	Opa1 (MGP_SPRETEiJ_G0021536) #28	MGP_SPRETEiJ_G0021537	Hes1 (MGP_SPRETEiJ_G0021538) #29	Cpn2 (MGP_SPRETEiJ_G0021539) #30	Lrrc15 (MGP_SPRETEiJ_G0021540) #31	Gp5 (MGP_SPRETEiJ_G0021541) #32	Atp13a3 (MGP_SPRETEiJ_G0021542) #33	Tmem44 (MGP_SPRETEiJ_G0021543) #34	Lsg1 (MGP_SPRETEiJ_G0021544) #35	Fam43a (MGP_SPRETEiJ_G0021545) #36
Ryukyu mouse	MODERN SPECIES	7	MGP_CAROLIEiJ_G0020619	Sst (MGP_CAROLIEiJ_G0020620) #7	Rtp2 (MGP_CAROLIEiJ_G0020621) #8	Bcl6 (MGP_CAROLIEiJ_G0020622) #9	Lpp (MGP_CAROLIEiJ_G0020623) #11	Tprg (MGP_CAROLIEiJ_G0020624) #12	Trp63 (MGP_CAROLIEiJ_G0020625) #13	P3h2 (MGP_CAROLIEiJ_G0020626) #14	Cldn1 (MGP_CAROLIEiJ_G0020627) #15	Cldn16 (MGP_CAROLIEiJ_G0020628) #16	Tmem207 (MGP_CAROLIEiJ_G0020629) #17	Il1rap (MGP_CAROLIEiJ_G0020630) #18	Gmnc (MGP_CAROLIEiJ_G0020631) #19	Ostn (MGP_CAROLIEiJ_G0020632) #20	MGP_CAROLIEiJ_G0020633 #21	MGP_CAROLIEiJ_G0020634 #22	Fgf12 (MGP_CAROLIEiJ_G0020635) #23	Mb21d2 (MGP_CAROLIEiJ_G0020636) #24	Plaat1 (MGP_CAROLIEiJ_G0020637) #25	Atp13a5 (MGP_CAROLIEiJ_G0020638) #26	Atp13a4 (MGP_CAROLIEiJ_G0020639) #27	Opa1 (MGP_CAROLIEiJ_G0020640) #28	MGP_CAROLIEiJ_G0020641	Hes1 (MGP_CAROLIEiJ_G0020642) #29	Cpn2 (MGP_CAROLIEiJ_G0020643) #30	Lrrc15 (MGP_CAROLIEiJ_G0020644) #31	Gp5 (MGP_CAROLIEiJ_G0020645) #32	Atp13a3 (MGP_CAROLIEiJ_G0020646) #33	Tmem44 (MGP_CAROLIEiJ_G0020647) #34	Lsg1 (MGP_CAROLIEiJ_G0020648) #35	Fam43a (MGP_CAROLIEiJ_G0020649) #36
Shrew mouse	MODERN SPECIES	3	MGP_PahariEiJ_G0016324	Sst (MGP_PahariEiJ_G0016325) #7	Rtp2 (MGP_PahariEiJ_G0016326) #8	Bcl6 (MGP_PahariEiJ_G0016327) #9	Lpp (MGP_PahariEiJ_G0016328) #11	Tprg (MGP_PahariEiJ_G0016329) #12	Trp63 (MGP_PahariEiJ_G0016330) #13	P3h2 (MGP_PahariEiJ_G0016331) #14	Cldn1 (MGP_PahariEiJ_G0016332) #15	Cldn16 (MGP_PahariEiJ_G0016333) #16	Tmem207 (MGP_PahariEiJ_G0016334) #17	Il1rap (MGP_PahariEiJ_G0016335) #18	Gmnc (MGP_PahariEiJ_G0016336) #19	Ostn (MGP_PahariEiJ_G0016337) #20	Uts2b (MGP_PahariEiJ_G0016338) #21	MGP_PahariEiJ_G0016339 #22	Fgf12 (MGP_PahariEiJ_G0016340) #23	Mb21d2 (MGP_PahariEiJ_G0016341) #24	Plaat1 (MGP_PahariEiJ_G0016342) #25	Atp13a5 (MGP_PahariEiJ_G0016343) #26	Atp13a4 (MGP_PahariEiJ_G0016344) #27	Opa1 (MGP_PahariEiJ_G0016345) #28	Hes1 (MGP_PahariEiJ_G0016346) #29	Cpn2 (MGP_PahariEiJ_G0016347) #30	Lrrc15 (MGP_PahariEiJ_G0016348) #31	Gp5 (MGP_PahariEiJ_G0016349) #32	Atp13a3 (MGP_PahariEiJ_G0016350) #33	Tmem44 (MGP_PahariEiJ_G0016351) #34	Lsg1 (MGP_PahariEiJ_G0016352) #35	Fam43a (MGP_PahariEiJ_G0016353) #36	Xxylt1 (MGP_PahariEiJ_G0016354) #37
Rat	MODERN SPECIES	2	Rtp2 (ENSRNOG00000022160) #8	Gm37419 (ENSRNOG00000069169) #10	Bcl6 (ENSRNOG00000001843) #9	LOC100365839 (ENSRNOG00000048109)	Lpp (ENSRNOG00000031669) #11	Tprg1 (ENSRNOG00000063970) #12	Tp63 (ENSRNOG00000001924) #13	P3h2 (ENSRNOG00000055751) #14	Cldn1 (ENSRNOG00000001926) #15	Cldn16 (ENSRNOG00000055138) #16	Tmem207 (ENSRNOG00000064931) #17	Il1rap (ENSRNOG00000001928) #18	Gmnc (ENSRNOG00000038505) #19	Ostn (ENSRNOG00000030462) #20	Uts2b (ENSRNOG00000038512) #21	Ccdc50 (ENSRNOG00000001930) #22	ENSRNOG00000067098	Fgf12 (ENSRNOG00000001931) #23	Mb21d2 (ENSRNOG00000024040) #24	Plaat1 (ENSRNOG00000001711) #25	Atp13a5 (ENSRNOG00000024127) #26	Il13ra1 (ENSRNOG00000001713)	Atp13a4 (ENSRNOG00000001714) #27	Opa1 (ENSRNOG00000001717) #28	Hes1 (ENSRNOG00000001720) #29	Cpn2 (ENSRNOG00000024384) #30	Lrrc15 (ENSRNOG00000068415) #31	Gp5 (ENSRNOG00000038540) #32	Atp13a3 (ENSRNOG00000066681) #33	RGD1562415 (ENSRNOG00000052877)	ENSRNOG00000064503
Cricetidae	ANCESTRAL SPECIES	16	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00900000143836 #10	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36	ENSGT00940000158154 #37
Cricetinae	ANCESTRAL SPECIES	10	ENSGT00940000162610	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36	ENSGT00940000158154 #37
Chinese hamster chok1gshd	MODERN SPECIES	382	Rtp2 (ENSCGRG00001023610) #8	Bcl6 (ENSCGRG00001013589) #9	Gm37419 (ENSCGRG00001011798) #10	ENSCGRG00001019717	Tprg (ENSCGRG00001021582) #12	Trp63 (ENSCGRG00001009778) #13	P3h2 (ENSCGRG00001021764) #14	Cldn1 (ENSCGRG00001024994) #15	Cldn16 (ENSCGRG00001002709) #16	Tmem207 (ENSCGRG00001007696) #17	ENSCGRG00001009646	Il1rap (ENSCGRG00001017518) #18	Gmnc (ENSCGRG00001014744) #19	Ostn (ENSCGRG00001021571) #20	Uts2b (ENSCGRG00001017532) #21	Ccdc50 (ENSCGRG00001021357) #22	Fgf12 (ENSCGRG00001012908) #23	Mb21d2 (ENSCGRG00001021085) #24	Plaat1 (ENSCGRG00001000460) #25	Atp13a5 (ENSCGRG00001024264) #26	Atp13a4 (ENSCGRG00001024242) #27	Opa1 (ENSCGRG00001006865) #28	Hes1 (ENSCGRG00001002910) #29	Cpn2 (ENSCGRG00001011563) #30	Lrrc15 (ENSCGRG00001013543) #31	Gp5 (ENSCGRG00001003803) #32	Atp13a3 (ENSCGRG00001018463) #33	Tmem44 (ENSCGRG00001011891) #34	Lsg1 (ENSCGRG00001019846) #35	Fam43a (ENSCGRG00001008523) #36	Xxylt1 (ENSCGRG00001002829) #37
Golden Hamster	MODERN SPECIES	645	ENSMAUG00000008425	Sst (ENSMAUG00000016983) #7	Gm37419 (ENSMAUG00000009832) #10	Bcl6 (ENSMAUG00000010580) #9	Lpp (ENSMAUG00000015219) #11	Tprg (ENSMAUG00000014159) #12	Trp63 (ENSMAUG00000008602) #13	P3h2 (ENSMAUG00000004803) #14	ENSMAUG00000005611	Cldn16 (ENSMAUG00000010011) #16	Tmem207 (ENSMAUG00000018884) #17	Il1rap (ENSMAUG00000021310) #18	Gmnc (ENSMAUG00000010906) #19	Ostn (ENSMAUG00000015065) #20	Uts2b (ENSMAUG00000014754) #21	Ccdc50 (ENSMAUG00000009454) #22	Fgf12 (ENSMAUG00000009873) #23	Mb21d2 (ENSMAUG00000015222) #24	Plaat1 (ENSMAUG00000009846) #25	Atp13a5 (ENSMAUG00000005310) #26	ENSMAUG00000014783 #27	ENSMAUG00000013061 #28	ENSMAUG00000021402 #28	ENSMAUG00000014537	Hes1 (ENSMAUG00000013357) #29	Gp5 (ENSMAUG00000009611) #32	Atp13a3 (ENSMAUG00000007154) #33	Tmem44 (ENSMAUG00000016186) #34	Lsg1 (ENSMAUG00000016976) #35	Fam43a (ENSMAUG00000010206) #36	ENSMAUG00000021550
Cricetidae_B	ANCESTRAL SPECIES	13	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00900000143836 #10	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36	ENSGT00940000158154 #37
Prairie vole	MODERN SPECIES	7	Sst (ENSMOCG00000012687) #7	Rtp2 (ENSMOCG00000001704) #8	Bcl6 (ENSMOCG00000002694) #9	Gm37419 (ENSMOCG00000007874) #10	Lpp (ENSMOCG00000002241) #11	Tprg (ENSMOCG00000003239) #12	Trp63 (ENSMOCG00000015252) #13	P3h2 (ENSMOCG00000008061) #14	Cldn1 (ENSMOCG00000012023) #15	Cldn16 (ENSMOCG00000011704) #16	Tmem207 (ENSMOCG00000015831) #17	Il1rap (ENSMOCG00000005743) #18	Gmnc (ENSMOCG00000016556) #19	Ostn (ENSMOCG00000000665) #20	ENSMOCG00000012392 #21	Ccdc50 (ENSMOCG00000021446) #22	Fgf12 (ENSMOCG00000012507) #23	Mb21d2 (ENSMOCG00000010129) #24	Plaat1 (ENSMOCG00000002137) #25	Atp13a5 (ENSMOCG00000013629) #26	Atp13a4 (ENSMOCG00000021525) #27	Opa1 (ENSMOCG00000008528) #28	ENSMOCG00000010174	Hes1 (ENSMOCG00000017059) #29	Cpn2 (ENSMOCG00000010472) #30	Lrrc15 (ENSMOCG00000011588) #31	Gp5 (ENSMOCG00000001153) #32	Atp13a3 (ENSMOCG00000002488) #33	Tmem44 (ENSMOCG00000002203) #34	Lsg1 (ENSMOCG00000022136) #35	Fam43a (ENSMOCG00000010025) #36
Northern American deer mouse	MODERN SPECIES	3	Sst (ENSPEMG00000017596) #7	Rtp2 (ENSPEMG00000020551) #8	Bcl6 (ENSPEMG00000020985) #9	Gm37419 (ENSPEMG00000002742) #10	Lpp (ENSPEMG00000011792) #11	Tprg (ENSPEMG00000020656) #12	Trp63 (ENSPEMG00000011679) #13	P3h2 (ENSPEMG00000016547) #14	Cldn1 (ENSPEMG00000025850) #15	Cldn16 (ENSPEMG00000013939) #16	Tmem207 (ENSPEMG00000030277) #17	Il1rap (ENSPEMG00000017318) #18	Gmnc (ENSPEMG00000023220) #19	Ostn (ENSPEMG00000020363) #20	Uts2b (ENSPEMG00000023514) #21	Ccdc50 (ENSPEMG00000020293) #22	ENSPEMG00000025234	Fgf12 (ENSPEMG00000012162) #23	Mb21d2 (ENSPEMG00000013470) #24	Plaat1 (ENSPEMG00000013741) #25	Atp13a5 (ENSPEMG00000015502) #26	Atp13a4 (ENSPEMG00000005881) #27	ENSPEMG00000027252	Opa1 (ENSPEMG00000017883) #28	Hes1 (ENSPEMG00000000147) #29	Cpn2 (ENSPEMG00000000500) #30	Lrrc15 (ENSPEMG00000000954) #31	Gp5 (ENSPEMG00000014456) #32	Atp13a3 (ENSPEMG00000007408) #33	Tmem44 (ENSPEMG00000009156) #34	ENSPEMG00000012082 #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	1073					ENSNGAG00000010532 #9	Lpp (ENSNGAG00000020023) #11	Tprg (ENSNGAG00000018094) #12	Trp63 (ENSNGAG00000019130) #13	P3h2 (ENSNGAG00000000626) #14	Cldn1 (ENSNGAG00000011403) #15	Cldn16 (ENSNGAG00000022077) #16	Tmem207 (ENSNGAG00000024223) #17	Il1rap (ENSNGAG00000021840) #18	Gmnc (ENSNGAG00000019785) #19	Ostn (ENSNGAG00000013923) #20	Ccdc50 (ENSNGAG00000017549) #22
Lesser Egyptian jerboa	MODERN SPECIES	54	Bcl6 (ENSJJAG00000017558) #9	Lpp (ENSJJAG00000005575) #11	Tprg (ENSJJAG00000010735) #12	ENSJJAG00000008682	Trp63 (ENSJJAG00000024331) #13	P3h2 (ENSJJAG00000013941) #14	Cldn1 (ENSJJAG00000005290) #15	Cldn16 (ENSJJAG00000011916) #16	Tmem207 (ENSJJAG00000019213) #17	Il1rap (ENSJJAG00000023480) #18	Gmnc (ENSJJAG00000005924) #19	ENSJJAG00000014895	ENSJJAG00000016353	Ostn (ENSJJAG00000011935) #20	Uts2b (ENSJJAG00000009999) #21	Ccdc50 (ENSJJAG00000013724) #22	Fgf12 (ENSJJAG00000010829) #23	ENSJJAG00000022315 #24	Plaat1 (ENSJJAG00000020429) #25	Atp13a5 (ENSJJAG00000000516) #26	Atp13a4 (ENSJJAG00000023394) #27	Opa1 (ENSJJAG00000021271) #28
Kangaroo rat	MODERN SPECIES	364			Rtp2 (ENSDORG00000005606) #8	Bcl6 (ENSDORG00000005608) #9	Lpp (ENSDORG00000009250) #11	Tprg (ENSDORG00000007733) #12	Trp63 (ENSDORG00000002061) #13	P3h2 (ENSDORG00000001518) #14	Cldn1 (ENSDORG00000029833) #15	Cldn16 (ENSDORG00000008134) #16	Tmem207 (ENSDORG00000024124) #17	Il1rap (ENSDORG00000014736) #18	Gmnc (ENSDORG00000002326) #19	Ostn (ENSDORG00000008337) #20	ENSDORG00000006097 #21	ENSDORG00000029288 #22	Fgf12 (ENSDORG00000004553) #23	Mb21d2 (ENSDORG00000029028) #24	Plaat1 (ENSDORG00000009577) #25	Atp13a5 (ENSDORG00000009578) #26	Atp13a4 (ENSDORG00000005640) #27	Opa1 (ENSDORG00000014872) #28	Hes1 (ENSDORG00000029830) #29	Lrrc15 (ENSDORG00000015805) #31	Atp13a3 (ENSDORG00000015806) #33	ENSDORG00000027375	ENSDORG00000002947 #34	Lsg1 (ENSDORG00000012354) #35	Fam43a (ENSDORG00000002402) #36	Xxylt1 (ENSDORG00000023273) #37	Acap2 (ENSDORG00000016623)
Rodentia_A	ANCESTRAL SPECIES	5	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36
Sciuridae	ANCESTRAL SPECIES	12	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36
Marmotini	ANCESTRAL SPECIES	57	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00900000143836 #10	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36
Alpin marmot	MODERN SPECIES	65	SST (ENSMMMG00000009413) #7	RTP2 (ENSMMMG00000009435) #8	BCL6 (ENSMMMG00000009441) #9	ENSMMMG00000009454 #10	LPP (ENSMMMG00000009476) #11	TPRG1 (ENSMMMG00000009493) #12	TP63 (ENSMMMG00000009524) #13	P3H2 (ENSMMMG00000010050) #14	CLDN1 (ENSMMMG00000010077) #15	CLDN16 (ENSMMMG00000010089) #16	TMEM207 (ENSMMMG00000010116) #17	IL1RAP (ENSMMMG00000010137) #18	GMNC (ENSMMMG00000010205) #19	OSTN (ENSMMMG00000010224) #20	UTS2B (ENSMMMG00000010236) #21	CCDC50 (ENSMMMG00000010258) #22	ENSMMMG00000010324 #23	ENSMMMG00000010336 #23	MB21D2 (ENSMMMG00000010348) #24	PLAAT1 (ENSMMMG00000010364) #25	ATP13A5 (ENSMMMG00000010381) #26	ATP13A4 (ENSMMMG00000010493) #27	OPA1 (ENSMMMG00000010558) #28	HES1 (ENSMMMG00000010681) #29	ENSMMMG00000010691	CPN2 (ENSMMMG00000010696) #30	LRRC15 (ENSMMMG00000010700) #31	GP5 (ENSMMMG00000010711) #32	ENSMMMG00000010728 #33	TMEM44 (ENSMMMG00000010743) #34	LSG1 (ENSMMMG00000010772) #35
Marmotini_b	ANCESTRAL SPECIES	324														ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000011058.b #22
Squirrel	MODERN SPECIES	496														ENSSTOG00000004745 #19	OSTN (ENSSTOG00000020025) #20	CCDC50 (ENSSTOG00000000219) #22
Arctic ground squirrel	MODERN SPECIES	1066																CCDC50 (ENSUPAG00010019862) #22
Eurasian red squirrel	MODERN SPECIES	1	ENSSVLG00005008392 #9	ENSSVLG00005008361	LPP (ENSSVLG00005008318) #11	TPRG1 (ENSSVLG00005008266) #12	ENSSVLG00005008233	TP63 (ENSSVLG00005007416) #13	P3H2 (ENSSVLG00005006989) #14	CLDN1 (ENSSVLG00005006941) #15	CLDN16 (ENSSVLG00005006918) #16	TMEM207 (ENSSVLG00005006891) #17	IL1RAP (ENSSVLG00005006739) #18	GMNC (ENSSVLG00005006667) #19	OSTN (ENSSVLG00005006607) #20	UTS2B (ENSSVLG00005006554) #21	ENSSVLG00005006532	CCDC50 (ENSSVLG00005006494) #22	FGF12 (ENSSVLG00005006414) #23	MB21D2 (ENSSVLG00005006368) #24	ENSSVLG00005006347	PLAAT1 (ENSSVLG00005006328) #25	ATP13A5 (ENSSVLG00005006143) #26	ATP13A4 (ENSSVLG00005005773) #27	OPA1 (ENSSVLG00005005536) #28	HES1 (ENSSVLG00005005416) #29	CPN2 (ENSSVLG00005005406) #30	LRRC15 (ENSSVLG00005005394) #31	GP5 (ENSSVLG00005005382) #32	ENSSVLG00005005145 #33	TMEM44 (ENSSVLG00005005023) #34	LSG1 (ENSSVLG00005004993) #35	FAM43A (ENSSVLG00005004980) #36
Hystricomorpha	ANCESTRAL SPECIES	6	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00900000143836 #10	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36
Hystricomorpha_a	ANCESTRAL SPECIES	4	ENSGT00950000183084.b.b	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT01100000266402	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36	ENSGT00940000158154 #37	ENSGT00940000156389.a
Hystricomorpha_b	ANCESTRAL SPECIES	9	ENSGT00950000183084.b.b	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT01100000266402	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000155941.A #33	ENSGT00940000156442 #35	ENSGT00940000161593 #36	ENSGT00940000158154 #37	ENSGT00940000156389.a	ENSGT00390000004757
Long-tailed chinchilla	MODERN SPECIES	127	RTP1 (ENSCLAG00000013765)	MASP1 (ENSCLAG00000012518)	SST (ENSCLAG00000015832) #7	RTP2 (ENSCLAG00000014964) #8	ENSCLAG00000017951	BCL6 (ENSCLAG00000012339) #9	LPP (ENSCLAG00000015949) #11	TPRG1 (ENSCLAG00000013300) #12	TP63 (ENSCLAG00000012538) #13	P3H2 (ENSCLAG00000012801) #14	CLDN1 (ENSCLAG00000013178) #15	CLDN16 (ENSCLAG00000012605) #16	IL1RAP (ENSCLAG00000012363) #18	GMNC (ENSCLAG00000011473) #19	OSTN (ENSCLAG00000013977) #20	CCDC50 (ENSCLAG00000014114) #22	FGF12 (ENSCLAG00000011409) #23	MB21D2 (ENSCLAG00000014657) #24	PLAAT1 (ENSCLAG00000012403) #25	ATP13A5 (ENSCLAG00000012908) #26	ATP13A4 (ENSCLAG00000012524) #27	OPA1 (ENSCLAG00000012734) #28	HES1 (ENSCLAG00000015321) #29	CPN2 (ENSCLAG00000018106) #30	LRRC15 (ENSCLAG00000018110) #31	ATP13A3 (ENSCLAG00000012807) #33	ENSCLAG00000013365 #35	FAM43A (ENSCLAG00000011597) #36	XXYLT1 (ENSCLAG00000011348) #37	ACAP2 (ENSCLAG00000013413)	ENSCLAG00000012941
Degu	MODERN SPECIES	169	ENSODEG00000000479	SST (ENSODEG00000000486) #7	RTP2 (ENSODEG00000000495) #8	BCL6 (ENSODEG00000000516) #9	LPP (ENSODEG00000000601) #11	TPRG1 (ENSODEG00000000645) #12	TP63 (ENSODEG00000000698) #13	P3H2 (ENSODEG00000000751) #14	CLDN1 (ENSODEG00000000775) #15	CLDN16 (ENSODEG00000000787) #16	TMEM207 (ENSODEG00000000814) #17	IL1RAP (ENSODEG00000000880) #18	ENSODEG00000000947	GMNC (ENSODEG00000000968) #19	OSTN (ENSODEG00000000984) #20	CCDC50 (ENSODEG00000001028) #22	ENSODEG00000018632	FGF12 (ENSODEG00000000898) #23	ENSODEG00000000915 #24	PLAAT1 (ENSODEG00000000928) #25	ATP13A5 (ENSODEG00000000942) #26
Guinea pig	MODERN SPECIES	7	RTP1 (ENSCPOG00000001203)	MASP1 (ENSCPOG00000015723)	SST (ENSCPOG00000009662) #7	RTP2 (ENSCPOG00000009665) #8	BCL6 (ENSCPOG00000004090) #9	ENSCPOG00000033304	LPP (ENSCPOG00000015584) #11	TPRG1 (ENSCPOG00000007437) #12	TP63 (ENSCPOG00000014770) #13	P3H2 (ENSCPOG00000004329) #14	CLDN1 (ENSCPOG00000037018) #15	CLDN16 (ENSCPOG00000008643) #16	IL1RAP (ENSCPOG00000008554) #18	GMNC (ENSCPOG00000019517) #19	OSTN (ENSCPOG00000024963) #20	CCDC50 (ENSCPOG00000013365) #22	FGF12 (ENSCPOG00000038518) #23	MB21D2 (ENSCPOG00000011028) #24	PLAAT1 (ENSCPOG00000008871) #25	ATP13A5 (ENSCPOG00000008873) #26	ATP13A4 (ENSCPOG00000008886) #27	OPA1 (ENSCPOG00000005925) #28	HES1 (ENSCPOG00000036195) #29	CPN2 (ENSCPOG00000037149) #30	LRRC15 (ENSCPOG00000005131) #31	ATP13A3 (ENSCPOG00000005136) #33	TMEM44 (ENSCPOG00000021309) #34	ENSCPOG00000002586 #35	FAM43A (ENSCPOG00000021729) #36	XXYLT1 (ENSCPOG00000009208) #37	ACAP2 (ENSCPOG00000009213)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	27	TP63 (ENSHGLG00000016277) #13	P3H2 (ENSHGLG00000019175) #14	CLDN1 (ENSHGLG00000038289) #15	CLDN16 (ENSHGLG00000018130) #16	ENSHGLG00000035223	TMEM207 (ENSHGLG00000037564) #17	IL1RAP (ENSHGLG00000018108) #18	ENSHGLG00000036963 #18	ENSHGLG00000019218	GMNC (ENSHGLG00000017131) #19	ENSHGLG00000040250	ENSHGLG00000016933	ENSHGLG00000016923	OSTN (ENSHGLG00000039251) #20	ENSHGLG00000042558 #21	CCDC50 (ENSHGLG00000016906) #22	FGF12 (ENSHGLG00000043378) #23	MB21D2 (ENSHGLG00000017083) #24	ENSHGLG00000017096	ENSHGLG00000035086	PLAAT1 (ENSHGLG00000017074) #25	ATP13A5 (ENSHGLG00000017059) #26	ATP13A4 (ENSHGLG00000017044) #27	OPA1 (ENSHGLG00000017084) #28	HES1 (ENSHGLG00000032453) #29	ENSHGLG00000040383	CPN2 (ENSHGLG00000045241) #30	LRRC15 (ENSHGLG00000017428) #31	GP5 (ENSHGLG00000038390) #32	ATP13A3 (ENSHGLG00000017411) #33	LSG1 (ENSHGLG00000017390) #35
Naked mole-rat female	MODERN SPECIES	7	CCSER2 (ENSHGLG00000008612)	GRID1 (ENSHGLG00000009129)	ENSHGLG00000007130	ENSHGLG00000006795	ENSHGLG00000045643	ENSHGLG00000001304	ENSHGLG00000000772	UTP15 (ENSHGLG00000000745)	ARHGEF28 (ENSHGLG00000000602)	ENSHGLG00000040928	ENC1 (ENSHGLG00000000552)	Hexb (ENSHGLG00000000527)	GFM2 (ENSHGLG00000000419)	NSA2 (ENSHGLG00000000324)	ENSHGLG00000035328	ENSHGLG00000032803 #22	ENSHGLG00000000294	ENSHGLG00000000270	ANKRD31 (ENSHGLG00000000230)	ENSHGLG00000043427	ENSHGLG00000040348	ENSHGLG00000000135	ENSHGLG00000034320	ENSHGLG00000002129	ENSHGLG00000036754	ENSHGLG00000002239	ENSHGLG00000040666	ENSHGLG00000035363	ENSHGLG00000001390	ENSHGLG00000001449	ENSHGLG00000041239
Lagomorpha	ANCESTRAL SPECIES	9	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36	ENSGT00940000158154 #37
Rabbit	MODERN SPECIES	5	ENSOCUG00000030680	LPP (ENSOCUG00000011764) #11	TPRG1 (ENSOCUG00000015959) #12	ENSOCUG00000038822	TP63 (ENSOCUG00000016465) #13	P3H2 (ENSOCUG00000011014) #14	CLDN1 (ENSOCUG00000011464) #15	CLDN16 (ENSOCUG00000011471) #16	TMEM207 (ENSOCUG00000029314) #17	IL1RAP (ENSOCUG00000004870) #18	GMNC (ENSOCUG00000009539) #19	OSTN (ENSOCUG00000007035) #20	UTS2B (ENSOCUG00000007038) #21	ENSOCUG00000013247	ENSOCUG00000035755	CCDC50 (ENSOCUG00000012695) #22	ENSOCUG00000026253	FGF12 (ENSOCUG00000007581) #23	MB21D2 (ENSOCUG00000015208) #24	ENSOCUG00000039155	ENSOCUG00000011454 #25	ENSOCUG00000011456	ENSOCUG00000029859	ENSOCUG00000032891 #27	ENSOCUG00000015801 #27	OPA1 (ENSOCUG00000015832) #28	HES1 (ENSOCUG00000009363) #29	CPN2 (ENSOCUG00000029332) #30	LRRC15 (ENSOCUG00000008086) #31	GP5 (ENSOCUG00000016530) #32	ATP13A3 (ENSOCUG00000016532) #33
Pika	MODERN SPECIES	4247																CCDC50 (ENSOPRG00000017200) #22
Tree shrew	MODERN SPECIES	2580																CCDC50 (ENSTBEG00000011962) #22
Primates	ANCESTRAL SPECIES	1	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36
Haplorrhini	ANCESTRAL SPECIES	5	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36
Simiiformes	ANCESTRAL SPECIES	1	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36
Catarrhini	ANCESTRAL SPECIES	2	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00550000076399	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000161714.a	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00390000004871.b.n	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34
Hominoidea	ANCESTRAL SPECIES	2	ENSGT00970000194716	ENSGT00550000076399	ENSGT00940000156022.b #11	ENSGT00440000039914.u.b	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00950000182991.B.yb.b	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000161714.a	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000155932.d	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00390000004871.b.n	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33
Hominidae	ANCESTRAL SPECIES	2	ENSGT00970000194716	ENSGT00550000076399	ENSGT00940000156022.b #11	ENSGT00440000039914.u.b	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00950000182991.B.yb.b	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000161714.a	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000155932.d	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00390000004871.b.n	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	2	ENSGT00550000076399	ENSGT00940000156022.b #11	ENSGT00440000039914.u.b	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00950000182991.B.yb.b	ENSGT00910000148791	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000161714.a	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000155932.d	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00390000004871.b.n	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33
Homo/Pan group	ANCESTRAL SPECIES	3	ENSGT00550000076399	ENSGT00940000156022.b #11	ENSGT00440000039914.u.b	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00950000182991.B.yb.b	ENSGT00910000148791	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000161714.a	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000155932.d	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34
Pan	ANCESTRAL SPECIES	2	ENSGT00550000076399	ENSGT00940000156022.b #11	ENSGT00440000039914.u.b	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00950000182991.B.yb.b	ENSGT00910000148791	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000161714.a	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000155932.d	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34
Chimpanzee	MODERN SPECIES	16	ENSPTRG00000047202	LPP (ENSPTRG00000015730) #11	ENSPTRG00000051134	TPRG1 (ENSPTRG00000015732) #12	TP63 (ENSPTRG00000015733) #13	P3H2 (ENSPTRG00000015736) #14	ENSPTRG00000050590	ENSPTRG00000048994	CLDN1 (ENSPTRG00000015738) #15	CLDN16 (ENSPTRG00000015739) #16	TMEM207 (ENSPTRG00000022961) #17	IL1RAP (ENSPTRG00000015740) #18	GMNC (ENSPTRG00000030020) #19	OSTN (ENSPTRG00000046164) #20	UTS2B (ENSPTRG00000015744) #21	CCDC50 (ENSPTRG00000015745) #22	PYDC2 (ENSPTRG00000040350)	FGF12 (ENSPTRG00000046123) #23	MB21D2 (ENSPTRG00000043316) #24	ENSPTRG00000051704	PLAAT1 (ENSPTRG00000015748) #25	ATP13A5 (ENSPTRG00000015749) #26	ATP13A4 (ENSPTRG00000015750) #27	OPA1 (ENSPTRG00000015752) #28	HES1 (ENSPTRG00000045020) #29	ENSPTRG00000046733	CPN2 (ENSPTRG00000030017) #30	LRRC15 (ENSPTRG00000015755) #31	GP5 (ENSPTRG00000043108) #32	ATP13A3 (ENSPTRG00000015757) #33	TMEM44 (ENSPTRG00000015759) #34
Bonobo	MODERN SPECIES	16	ENSPPAG00000015792	LPP (ENSPPAG00000030332) #11	ENSPPAG00000032220	TPRG1 (ENSPPAG00000040147) #12	TP63 (ENSPPAG00000037443) #13	P3H2 (ENSPPAG00000040013) #14	ENSPPAG00000012623	ENSPPAG00000043962	CLDN1 (ENSPPAG00000034892) #15	ENSPPAG00000031653 #16	TMEM207 (ENSPPAG00000002222) #17	ENSPPAG00000008766 #18	GMNC (ENSPPAG00000017215) #19	OSTN (ENSPPAG00000031371) #20	ENSPPAG00000005215 #21	CCDC50 (ENSPPAG00000029089) #22	PYDC2 (ENSPPAG00000003263)	TPT1 (ENSPPAG00000041854)	GTF2F2 (ENSPPAG00000035711)	KCTD4 (ENSPPAG00000012273)	ENSPPAG00000043786	NUFIP1 (ENSPPAG00000027467)	ENSPPAG00000028290	TSC22D1 (ENSPPAG00000039757)	ENSPPAG00000041381	SMIM2 (ENSPPAG00000029243)	LACC1 (ENSPPAG00000034545)	ENSPPAG00000040435	ENSPPAG00000035279 #23	MB21D2 (ENSPPAG00000010683) #24	ENSPPAG00000027469
Human	MODERN SPECIES	15	SST (ENSG00000157005) #7	RTP2 (ENSG00000198471) #8	BCL6 (ENSG00000113916) #9	ENSG00000285938	LPP (ENSG00000145012) #11	TPRG1 (ENSG00000188001) #12	TP63 (ENSG00000073282) #13	P3H2 (ENSG00000090530) #14	CLDN1 (ENSG00000163347) #15	CLDN16 (ENSG00000113946) #16	TMEM207 (ENSG00000198398) #17	IL1RAP (ENSG00000196083) #18	GMNC (ENSG00000205835) #19	OSTN (ENSG00000188729) #20	UTS2B (ENSG00000188958) #21	CCDC50 (ENSG00000152492) #22	PYDC2 (ENSG00000253548)	FGF12 (ENSG00000114279) #23	MB21D2 (ENSG00000180611) #24	PLAAT1 (ENSG00000127252) #25	ATP13A5 (ENSG00000187527) #26	ATP13A4 (ENSG00000127249) #27	OPA1 (ENSG00000198836) #28	HES1 (ENSG00000114315) #29	CPN2 (ENSG00000178772) #30	LRRC15 (ENSG00000172061) #31	GP5 (ENSG00000178732) #32	ATP13A3 (ENSG00000133657) #33	TMEM44 (ENSG00000145014) #34	LSG1 (ENSG00000041802) #35	FAM43A (ENSG00000185112) #36
Gorilla	MODERN SPECIES	16	ENSGGOG00000041374	LPP (ENSGGOG00000016679) #11	ENSGGOG00000040908	TPRG1 (ENSGGOG00000044070) #12	TP63 (ENSGGOG00000005113) #13	P3H2 (ENSGGOG00000009749) #14	ENSGGOG00000039775	ENSGGOG00000037128	CLDN1 (ENSGGOG00000013999) #15	ENSGGOG00000025366 #16	TMEM207 (ENSGGOG00000015572) #17	ENSGGOG00000012048 #18	GMNC (ENSGGOG00000038407) #19	OSTN (ENSGGOG00000039295) #20	UTS2B (ENSGGOG00000034872) #21	CCDC50 (ENSGGOG00000011521) #22	PYDC2 (ENSGGOG00000043904)	ENSGGOG00000036293 #23	MB21D2 (ENSGGOG00000038723) #24	ENSGGOG00000025693	PLAAT1 (ENSGGOG00000016505) #25	ATP13A5 (ENSGGOG00000007037) #26	ATP13A4 (ENSGGOG00000007060) #27	OPA1 (ENSGGOG00000006549) #28	ENSGGOG00000042716	HES1 (ENSGGOG00000008521) #29	CPN2 (ENSGGOG00000014916) #30	LRRC15 (ENSGGOG00000007329) #31	ATP13A3 (ENSGGOG00000011475) #33	TMEM44 (ENSGGOG00000002921) #34	LSG1 (ENSGGOG00000000520) #35
Orangutan	MODERN SPECIES	16	SST (ENSPPYG00000014393) #7	RTP2 (ENSPPYG00000014394) #8	BCL6 (ENSPPYG00000014395) #9	LPP (ENSPPYG00000014398) #11	TPRG1 (ENSPPYG00000014400) #12	TP63 (ENSPPYG00000014401) #13	P3H2 (ENSPPYG00000040690) #14	CLDN1 (ENSPPYG00000014402) #15	ENSPPYG00000014403 #16	TMEM207 (ENSPPYG00000038274) #17	IL1RAP (ENSPPYG00000014405) #18	GMNC (ENSPPYG00000014407) #19	OSTN (ENSPPYG00000014408) #20	ENSPPYG00000014409 #21	ENSPPYG00000039495	CCDC50 (ENSPPYG00000014410) #22	PYDC2 (ENSPPYG00000014482)	FGF12 (ENSPPYG00000014412) #23	MB21D2 (ENSPPYG00000014413) #24	ENSPPYG00000030366	ENSPPYG00000014414 #25	ATP13A5 (ENSPPYG00000014415) #26	ATP13A4 (ENSPPYG00000014416) #27	OPA1 (ENSPPYG00000014417) #28	HES1 (ENSPPYG00000030041) #29	CPN2 (ENSPPYG00000014420) #30	LRRC15 (ENSPPYG00000014421) #31	GP5 (ENSPPYG00000014422) #32	ATP13A3 (ENSPPYG00000014423) #33	ENSPPYG00000033896	TMEM44 (ENSPPYG00000029512) #34
Gibbon	MODERN SPECIES	1	ENSNLEG00000032641	LPP (ENSNLEG00000006716) #11	ENSNLEG00000036105	TPRG1 (ENSNLEG00000034710) #12	TP63 (ENSNLEG00000006723) #13	ENSNLEG00000006734 #14	ENSNLEG00000031270	CLDN1 (ENSNLEG00000006737) #15	ENSNLEG00000006741 #16	TMEM207 (ENSNLEG00000006744) #17	ENSNLEG00000006747 #18	ENSNLEG00000030845	GMNC (ENSNLEG00000006755) #19	OSTN (ENSNLEG00000006760) #20	UTS2B (ENSNLEG00000006764) #21	CCDC50 (ENSNLEG00000006769) #22	ENSNLEG00000006781 #23	MB21D2 (ENSNLEG00000032215) #24	ENSNLEG00000032196	ENSNLEG00000006785 #25	ATP13A5 (ENSNLEG00000006787) #26	ATP13A4 (ENSNLEG00000006795) #27	OPA1 (ENSNLEG00000006807) #28	ENSNLEG00000030587	LRRC15 (ENSNLEG00000008226) #31	ATP13A3 (ENSNLEG00000008235) #33	TMEM44 (ENSNLEG00000008286) #34	LSG1 (ENSNLEG00000008293) #35	FAM43A (ENSNLEG00000018711) #36	XXYLT1 (ENSNLEG00000034040) #37	ACAP2 (ENSNLEG00000008339)
Cercopithecidae	ANCESTRAL SPECIES	1	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00550000076399	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00950000183179.b.a.e	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000161714.a	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00390000004871.b.n	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35
Rhinopithecus	DUPLICATION
Rhinopithecus	ANCESTRAL SPECIES	40	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00950000183179.b.a.e	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b.a #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00390000004871.b.n	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000161771 #31	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36	ENSGT00530000063681.b.b
Golden snub-nosed monkey	MODERN SPECIES	2540					TP63 (ENSRROG00000014405) #13	P3H2 (ENSRROG00000031164) #14	ENSRROG00000036087	CLDN1 (ENSRROG00000041334) #15	CLDN16 (ENSRROG00000038871) #16	TMEM207 (ENSRROG00000028907) #17	IL1RAP (ENSRROG00000028179) #18	ENSRROG00000033558	GMNC (ENSRROG00000016456) #19	OSTN (ENSRROG00000029029) #20	UTS2B (ENSRROG00000015194) #21	ENSRROG00000034692 #22	ENSRROG00000042407
Black snub-nosed monkey	MODERN SPECIES	445	RTP2 (ENSRBIG00000041980) #8	BCL6 (ENSRBIG00000042034) #9	ENSRBIG00000016306	LPP (ENSRBIG00000028952) #11	TPRG1 (ENSRBIG00000030698) #12	TP63 (ENSRBIG00000028344) #13	P3H2 (ENSRBIG00000018185) #14	ENSRBIG00000040888	CLDN1 (ENSRBIG00000041199) #15	CLDN16 (ENSRBIG00000001398) #16	TMEM207 (ENSRBIG00000013157) #17	IL1RAP (ENSRBIG00000041877) #18	GMNC (ENSRBIG00000034785) #19	OSTN (ENSRBIG00000029991) #20	UTS2B (ENSRBIG00000038653) #21	CCDC50 (ENSRBIG00000040213) #22	FGF12 (ENSRBIG00000042333) #23	MB21D2 (ENSRBIG00000031675) #24	PLAAT1 (ENSRBIG00000044405) #25	ATP13A5 (ENSRBIG00000034176) #26	ATP13A4 (ENSRBIG00000034199) #27	ENSRBIG00000030746	OPA1 (ENSRBIG00000042894) #28	ENSRBIG00000039684	HES1 (ENSRBIG00000028639) #29	ENSRBIG00000021834	LRRC15 (ENSRBIG00000038816) #31	ATP13A3 (ENSRBIG00000010748) #33	TMEM44 (ENSRBIG00000029003) #34	LSG1 (ENSRBIG00000029053) #35	FAM43A (ENSRBIG00000000194) #36
Rhinopithecus	ANCESTRAL SPECIES																	ENSGT00390000011058.b.b #22
Golden snub-nosed monkey	MODERN SPECIES	1529									GRM3 (ENSRROG00000045502)	ELAPOR2 (ENSRROG00000003598)	DMTF1 (ENSRROG00000042857)	TMEM243 (ENSRROG00000028387)	CROT (ENSRROG00000043845)	ABCB4 (ENSRROG00000036498)	RUNDC3B (ENSRROG00000043323)	ENSRROG00000038791 #22	SLC25A40 (ENSRROG00000041129)	DBF4 (ENSRROG00000034287)	ADAM22 (ENSRROG00000029789)	SRI (ENSRROG00000038893)
Cercopithecinae	ANCESTRAL SPECIES	5	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00550000076399	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00950000183179.b.a.e	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000161714.a	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00390000004871.b.n	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35
Cercopithecinae_a	ANCESTRAL SPECIES	5	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00550000076399	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00950000183179.b.a.e	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000161714.a	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00390000004871.b.n	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34
Cercopithecinae_b	ANCESTRAL SPECIES		ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00550000076399	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00950000183179.b.a.e	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000161714.a	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00950000183014.f.b.a.a.t.h.b	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00390000004871.b.n	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000161771 #31	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35
Olive baboon	MODERN SPECIES	11	ENSPANG00000029638	ENSPANG00000051339	LPP (ENSPANG00000006486) #11	ENSPANG00000037115	TPRG1 (ENSPANG00000004350) #12	TP63 (ENSPANG00000006656) #13	P3H2 (ENSPANG00000005379) #14	ENSPANG00000051089	CLDN1 (ENSPANG00000012594) #15	CLDN16 (ENSPANG00000013683) #16	TMEM207 (ENSPANG00000005049) #17	IL1RAP (ENSPANG00000002308) #18	GMNC (ENSPANG00000048845) #19	OSTN (ENSPANG00000011077) #20	UTS2B (ENSPANG00000029460) #21	CCDC50 (ENSPANG00000014020) #22	PYDC2 (ENSPANG00000007087)	FGF12 (ENSPANG00000004654) #23	ENSPANG00000038631	ENSPANG00000040009	MB21D2 (ENSPANG00000008890) #24	ENSPANG00000049435	PLAAT1 (ENSPANG00000001991) #25	ATP13A5 (ENSPANG00000007603) #26	ATP13A4 (ENSPANG00000024428) #27	OPA1 (ENSPANG00000016679) #28	HES1 (ENSPANG00000050878) #29	ENSPANG00000045461	GP5 (ENSPANG00000042651) #32	ATP13A3 (ENSPANG00000000969) #33	ENSPANG00000010652
Cercopithecinae_d	ANCESTRAL SPECIES	16	ENSGT00970000194716	ENSGT00550000076399	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00950000182991.B.xb	ENSGT00940000159593 #14	ENSGT00950000183179.b.a.e	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000161714.a	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00950000183014.f.b.a.a.t.h.b	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00390000004871.b.n	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000161771 #31	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35
Drill	MODERN SPECIES	819							P3H2 (ENSMLEG00000039421) #14	ENSMLEG00000041651	CLDN1 (ENSMLEG00000037684) #15	CLDN16 (ENSMLEG00000043737) #16	TMEM207 (ENSMLEG00000044176) #17	IL1RAP (ENSMLEG00000029035) #18	GMNC (ENSMLEG00000031349) #19	OSTN (ENSMLEG00000011032) #20	UTS2B (ENSMLEG00000031122) #21	CCDC50 (ENSMLEG00000033815) #22	PYDC2 (ENSMLEG00000009878)	FGF12 (ENSMLEG00000039970) #23	ENSMLEG00000015063	MB21D2 (ENSMLEG00000021763) #24	ENSMLEG00000014555	PLAAT1 (ENSMLEG00000042155) #25	ATP13A5 (ENSMLEG00000029317) #26	ATP13A4 (ENSMLEG00000043141) #27	OPA1 (ENSMLEG00000031410) #28	ENSMLEG00000036298	HES1 (ENSMLEG00000040502) #29
Sooty mangabey	MODERN SPECIES	458	ENSCATG00000031819	LPP (ENSCATG00000039755) #11	TPRG1 (ENSCATG00000034206) #12	TP63 (ENSCATG00000035905) #13	ENSCATG00000035983	ENSCATG00000035534	P3H2 (ENSCATG00000004107) #14	ENSCATG00000043737	CLDN1 (ENSCATG00000036292) #15	CLDN16 (ENSCATG00000032777) #16	TMEM207 (ENSCATG00000030596) #17	IL1RAP (ENSCATG00000039782) #18	GMNC (ENSCATG00000036034) #19	OSTN (ENSCATG00000037128) #20	UTS2B (ENSCATG00000039473) #21	CCDC50 (ENSCATG00000045300) #22	PYDC2 (ENSCATG00000009968)	FGF12 (ENSCATG00000014779) #23	MB21D2 (ENSCATG00000038408) #24	ENSCATG00000035209	PLAAT1 (ENSCATG00000042493) #25	ATP13A5 (ENSCATG00000040436) #26	ATP13A4 (ENSCATG00000006996) #27	OPA1 (ENSCATG00000036755) #28	HES1 (ENSCATG00000035003) #29	ENSCATG00000019622	LRRC15 (ENSCATG00000045297) #31	ATP13A3 (ENSCATG00000023296) #33	TMEM44 (ENSCATG00000039641) #34	LSG1 (ENSCATG00000042060) #35	FAM43A (ENSCATG00000021558) #36
Macaca	ANCESTRAL SPECIES	5	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000161714.a	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00390000004871.b.n	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35
Macaca_a	ANCESTRAL SPECIES	5	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT01100000263765.a.b	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000161714.a	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT01100000263493.a.b.a.a.a.a.a.a.b.a.a.b	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35
Rhesus	MODERN SPECIES	11	RTP2 (ENSMMUG00000050972) #8	BCL6 (ENSMMUG00000009198) #9	ENSMMUG00000049390	LPP (ENSMMUG00000016823) #11	ENSMMUG00000061703	TP63 (ENSMMUG00000016466) #13	P3H2 (ENSMMUG00000000623) #14	ENSMMUG00000055459	CLDN1 (ENSMMUG00000001915) #15	CLDN16 (ENSMMUG00000018671) #16	TMEM207 (ENSMMUG00000052741) #17	IL1RAP (ENSMMUG00000022562) #18	GMNC (ENSMMUG00000065165) #19	OSTN (ENSMMUG00000020068) #20	UTS2B (ENSMMUG00000046004) #21	CCDC50 (ENSMMUG00000015330) #22	PYDC2 (ENSMMUG00000014141)	FGF12 (ENSMMUG00000000949) #23	MB21D2 (ENSMMUG00000042245) #24	ENSMMUG00000023553	PLAAT1 (ENSMMUG00000008865) #25	ENSMMUG00000056150	ATP13A5 (ENSMMUG00000009760) #26	ATP13A4 (ENSMMUG00000009764) #27	OPA1 (ENSMMUG00000009765) #28	HES1 (ENSMMUG00000058672) #29	ENSMMUG00000063188	CPN2 (ENSMMUG00000007865) #30	LRRC15 (ENSMMUG00000007866) #31	GP5 (ENSMMUG00000050950) #32	ATP13A3 (ENSMMUG00000012032) #33
Crab-eating macaque	MODERN SPECIES	11	RTP2 (ENSMFAG00000043246) #8	BCL6 (ENSMFAG00000001360) #9	LPP (ENSMFAG00000041519) #11	TPRG1 (ENSMFAG00000056922) #12	TP63 (ENSMFAG00000035702) #13	P3H2 (ENSMFAG00000036104) #14	ENSMFAG00000060414	CLDN1 (ENSMFAG00000062691) #15	CLDN16 (ENSMFAG00000043262) #16	TMEM207 (ENSMFAG00000001349) #17	IL1RAP (ENSMFAG00000039646) #18	GMNC (ENSMFAG00000031832) #19	OSTN (ENSMFAG00000054957) #20	ENSMFAG00000048722	UTS2B (ENSMFAG00000037124) #21	CCDC50 (ENSMFAG00000034097) #22	FGF12 (ENSMFAG00000036517) #23	MB21D2 (ENSMFAG00000032253) #24	PLAAT1 (ENSMFAG00000039474) #25	ENSMFAG00000055991	ATP13A5 (ENSMFAG00000040211) #26	ATP13A4 (ENSMFAG00000033333) #27	OPA1 (ENSMFAG00000038307) #28	HES1 (ENSMFAG00000050733) #29	ENSMFAG00000065207	CPN2 (ENSMFAG00000065852) #30	LRRC15 (ENSMFAG00000026569) #31	ATP13A3 (ENSMFAG00000039232) #33	TMEM44 (ENSMFAG00000029965) #34	LSG1 (ENSMFAG00000039903) #35	ENSMFAG00000045710
Pig-tailed macaque	MODERN SPECIES	467	RTP2 (ENSMNEG00000035103) #8	BCL6 (ENSMNEG00000034068) #9	ENSMNEG00000026531	LPP (ENSMNEG00000044410) #11	TPRG1 (ENSMNEG00000031001) #12	TP63 (ENSMNEG00000031212) #13	ENSMNEG00000034052	P3H2 (ENSMNEG00000027261) #14	CLDN1 (ENSMNEG00000035518) #15	CLDN16 (ENSMNEG00000030636) #16	TMEM207 (ENSMNEG00000036710) #17	IL1RAP (ENSMNEG00000036837) #18	GMNC (ENSMNEG00000004508) #19	OSTN (ENSMNEG00000030520) #20	UTS2B (ENSMNEG00000043623) #21	CCDC50 (ENSMNEG00000040554) #22	PYDC2 (ENSMNEG00000024221)	FGF12 (ENSMNEG00000035711) #23	ENSMNEG00000027205	MB21D2 (ENSMNEG00000000014) #24	PLAAT1 (ENSMNEG00000030309) #25	ATP13A5 (ENSMNEG00000034872) #26	ATP13A4 (ENSMNEG00000031545) #27	OPA1 (ENSMNEG00000029475) #28	ENSMNEG00000036226	HES1 (ENSMNEG00000037003) #29	ENSMNEG00000035481	ENSMNEG00000019548	LRRC15 (ENSMNEG00000035380) #31	ATP13A3 (ENSMNEG00000030350) #33	TMEM44 (ENSMNEG00000039983) #34
Vervet Monkey	MODERN SPECIES	6	RTP4 (ENSCSAG00000009173)	SST (ENSCSAG00000009164) #7	RTP2 (ENSCSAG00000009160) #8	ENSCSAG00000009153	BCL6 (ENSCSAG00000009138) #9	LPP (ENSCSAG00000009098) #11	TPRG1 (ENSCSAG00000009086) #12	TP63 (ENSCSAG00000009062) #13	P3H2 (ENSCSAG00000009034) #14	CLDN1 (ENSCSAG00000009021) #15	CLDN16 (ENSCSAG00000009010) #16	TMEM207 (ENSCSAG00000008995) #17	IL1RAP (ENSCSAG00000008986) #18	GMNC (ENSCSAG00000008977) #19	OSTN (ENSCSAG00000008968) #20	CCDC50 (ENSCSAG00000008960) #22	PYDC2 (ENSCSAG00000018930)	ENSCSAG00000008940 #23	ENSCSAG00000018932	MB21D2 (ENSCSAG00000008934) #24	PLAAT1 (ENSCSAG00000008930) #25	ATP13A5 (ENSCSAG00000008918) #26	ATP13A4 (ENSCSAG00000008891) #27	OPA1 (ENSCSAG00000008881) #28	HES1 (ENSCSAG00000008869) #29	CPN2 (ENSCSAG00000018933) #30	LRRC15 (ENSCSAG00000018934) #31	GP5 (ENSCSAG00000018936) #32	ATP13A3 (ENSCSAG00000008862) #33	TMEM44 (ENSCSAG00000008841) #34	LSG1 (ENSCSAG00000008796) #35
Platyrrhini	ANCESTRAL SPECIES	43	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36
Cebidae	ANCESTRAL SPECIES	14	ENSGT00940000162610	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36
Cebidae_a	ANCESTRAL SPECIES	14	ENSGT00940000162610	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36	ENSGT00940000158154 #37
Bolivian squirrel monkey	MODERN SPECIES	62	SST (ENSSBOG00000023193) #7	RTP2 (ENSSBOG00000032336) #8	BCL6 (ENSSBOG00000026320) #9	LPP (ENSSBOG00000028068) #11	TPRG1 (ENSSBOG00000036102) #12	TP63 (ENSSBOG00000033306) #13	P3H2 (ENSSBOG00000035056) #14	CLDN1 (ENSSBOG00000020833) #15	CLDN16 (ENSSBOG00000029384) #16	TMEM207 (ENSSBOG00000036118) #17	IL1RAP (ENSSBOG00000032825) #18	GMNC (ENSSBOG00000035297) #19	ENSSBOG00000035925	OSTN (ENSSBOG00000032414) #20	ENSSBOG00000032518	CCDC50 (ENSSBOG00000033037) #22	ENSSBOG00000035617	ENSSBOG00000033371	FGF12 (ENSSBOG00000033018) #23	ENSSBOG00000022053	MB21D2 (ENSSBOG00000021427) #24	ENSSBOG00000024248	PLAAT1 (ENSSBOG00000030423) #25	ATP13A5 (ENSSBOG00000030531) #26	ATP13A4 (ENSSBOG00000032487) #27	OPA1 (ENSSBOG00000021973) #28	HES1 (ENSSBOG00000028215) #29	ENSSBOG00000033814	CPN2 (ENSSBOG00000014283) #30	LRRC15 (ENSSBOG00000031469) #31	ATP13A3 (ENSSBOG00000005544) #33
Capuchin	MODERN SPECIES	43													ENSCCAG00000029684 #18	GMNC (ENSCCAG00000025386) #19	OSTN (ENSCCAG00000026851) #20	CCDC50 (ENSCCAG00000035102) #22	FGF12 (ENSCCAG00000031350) #23	MB21D2 (ENSCCAG00000027238) #24	PLAAT1 (ENSCCAG00000024709) #25	ATP13A5 (ENSCCAG00000021922) #26	ATP13A4 (ENSCCAG00000031621) #27	OPA1 (ENSCCAG00000020422) #28	HES1 (ENSCCAG00000037367) #29	EDN1 (ENSCCAG00000020305)	HIVEP1 (ENSCCAG00000025715)	ADTRP (ENSCCAG00000030420)	TMEM170B (ENSCCAG00000027318)	NEDD9 (ENSCCAG00000000521)	SMIM13 (ENSCCAG00000001111)	ELOVL2 (ENSCCAG00000020667)	SYCP2L (ENSCCAG00000027217)
Marmoset	MODERN SPECIES	6	BCL6 (ENSCJAG00000014375) #9	ENSCJAG00000041964	ENSCJAG00000077902	ENSCJAG00000071140	LPP (ENSCJAG00000014354) #11	TPRG1 (ENSCJAG00000014348) #12	TP63 (ENSCJAG00000014256) #13	P3H2 (ENSCJAG00000014239) #14	ENSCJAG00000059304	CLDN1 (ENSCJAG00000046185) #15	CLDN16 (ENSCJAG00000014218) #16	TMEM207 (ENSCJAG00000046748) #17	IL1RAP (ENSCJAG00000014191) #18	GMNC (ENSCJAG00000074485) #19	OSTN (ENSCJAG00000064215) #20	CCDC50 (ENSCJAG00000014177) #22	ENSCJAG00000072839	FGF12 (ENSCJAG00000040892) #23	MB21D2 (ENSCJAG00000057912) #24	PLAAT1 (ENSCJAG00000014159) #25	ATP13A5 (ENSCJAG00000014131) #26	ATP13A4 (ENSCJAG00000014072) #27	OPA1 (ENSCJAG00000014052) #28	ENSCJAG00000072763	HES1 (ENSCJAG00000069910) #29	CPN2 (ENSCJAG00000022226) #30	LRRC15 (ENSCJAG00000014042) #31	GP5 (ENSCJAG00000085892) #32	ATP13A3 (ENSCJAG00000013996) #33	TMEM44 (ENSCJAG00000013987) #34	LSG1 (ENSCJAG00000013962) #35
Mas night monkey	MODERN SPECIES	536						TPRG1 (ENSANAG00000035411) #12	TP63 (ENSANAG00000035266) #13	P3H2 (ENSANAG00000021430) #14	CLDN1 (ENSANAG00000030212) #15	CLDN16 (ENSANAG00000026689) #16	TMEM207 (ENSANAG00000000019) #17	IL1RAP (ENSANAG00000035717) #18	GMNC (ENSANAG00000023406) #19	OSTN (ENSANAG00000029559) #20	UTS2B (ENSANAG00000034010) #21	CCDC50 (ENSANAG00000037574) #22	ENSANAG00000032688	FGF12 (ENSANAG00000019853) #23	MB21D2 (ENSANAG00000037636) #24	PLAAT1 (ENSANAG00000031574) #25	ATP13A5 (ENSANAG00000026333) #26	ATP13A4 (ENSANAG00000023937) #27	ENSANAG00000029173 #28	ENSANAG00000021266 #28	HES1 (ENSANAG00000019249) #29	LRRC15 (ENSANAG00000028624) #31	GP5 (ENSANAG00000021224) #32	ATP13A3 (ENSANAG00000001727) #33	ENSANAG00000025365	ENSANAG00000020868	ENSANAG00000029062
Tarsier	MODERN SPECIES	6823																CCDC50 (ENSTSYG00000003530) #22	ENSTSYG00000004011	ENSTSYG00000034946	ZNF365 (ENSTSYG00000034467)
Strepsirrhini	ANCESTRAL SPECIES	1	ENSGT00940000162610	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36
Lemuriformes	ANCESTRAL SPECIES	9	ENSGT00940000162610	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36
Mouse lemur	MODERN SPECIES		RTP4 (ENSMICG00000048967)	SST (ENSMICG00000049023) #7	RTP2 (ENSMICG00000049274) #8	BCL6 (ENSMICG00000049071) #9	LPP (ENSMICG00000049379) #11	TPRG1 (ENSMICG00000048908) #12	TP63 (ENSMICG00000049134) #13	P3H2 (ENSMICG00000049208) #14	CLDN1 (ENSMICG00000049297) #15	CLDN16 (ENSMICG00000049404) #16	TMEM207 (ENSMICG00000049457) #17	IL1RAP (ENSMICG00000049250) #18	GMNC (ENSMICG00000048624) #19	OSTN (ENSMICG00000049275) #20	UTS2B (ENSMICG00000049145) #21	CCDC50 (ENSMICG00000048952) #22	FGF12 (ENSMICG00000049216) #23	MB21D2 (ENSMICG00000048922) #24	PLAAT1 (ENSMICG00000049538) #25	ATP13A5 (ENSMICG00000049567) #26	ATP13A4 (ENSMICG00000049368) #27	OPA1 (ENSMICG00000049289) #28	HES1 (ENSMICG00000049508) #29	ENSMICG00000049247	CPN2 (ENSMICG00000049231) #30	LRRC15 (ENSMICG00000049528) #31	ATP13A3 (ENSMICG00000049461) #33	TMEM44 (ENSMICG00000048733) #34	LSG1 (ENSMICG00000049087) #35	FAM43A (ENSMICG00000049270) #36	XXYLT1 (ENSMICG00000049583) #37
Lemuriformes_a	ANCESTRAL SPECIES	9	ENSGT00940000162610	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36	ENSGT00940000158154 #37
Coquerels sifaka	MODERN SPECIES	51	SST (ENSPCOG00000015750) #7	RTP2 (ENSPCOG00000006581) #8	BCL6 (ENSPCOG00000016145) #9	ENSPCOG00000003076	LPP (ENSPCOG00000026763) #11	TPRG1 (ENSPCOG00000023780) #12	TP63 (ENSPCOG00000028226) #13	P3H2 (ENSPCOG00000003301) #14	CLDN1 (ENSPCOG00000028280) #15	ENSPCOG00000019841 #16	TMEM207 (ENSPCOG00000014987) #17	IL1RAP (ENSPCOG00000018786) #18	GMNC (ENSPCOG00000018260) #19	OSTN (ENSPCOG00000011464) #20	UTS2B (ENSPCOG00000015337) #21	CCDC50 (ENSPCOG00000024703) #22	FGF12 (ENSPCOG00000019039) #23	MB21D2 (ENSPCOG00000015745) #24	ENSPCOG00000010813	PLAAT1 (ENSPCOG00000026033) #25	ATP13A5 (ENSPCOG00000019802) #26	ATP13A4 (ENSPCOG00000026873) #27	OPA1 (ENSPCOG00000019450) #28	HES1 (ENSPCOG00000015020) #29	ENSPCOG00000022989	ATP13A3 (ENSPCOG00000023788) #33	TMEM44 (ENSPCOG00000022988) #34	LSG1 (ENSPCOG00000012360) #35	FAM43A (ENSPCOG00000006099) #36	XXYLT1 (ENSPCOG00000021428) #37	ACAP2 (ENSPCOG00000023454)
Greater bamboo lemur	MODERN SPECIES	204	RTP4 (ENSPSMG00000018513)	SST (ENSPSMG00000018528) #7	RTP2 (ENSPSMG00000018537) #8	BCL6 (ENSPSMG00000018578) #9	LPP (ENSPSMG00000018606) #11	TPRG1 (ENSPSMG00000018617) #12	TP63 (ENSPSMG00000018878) #13	P3H2 (ENSPSMG00000019303) #14	CLDN1 (ENSPSMG00000019325) #15	CLDN16 (ENSPSMG00000019333) #16	TMEM207 (ENSPSMG00000019337) #17	IL1RAP (ENSPSMG00000019383) #18	GMNC (ENSPSMG00000019439) #19	OSTN (ENSPSMG00000019456) #20	UTS2B (ENSPSMG00000019467) #21	CCDC50 (ENSPSMG00000019516) #22	FGF12 (ENSPSMG00000019586) #23	MB21D2 (ENSPSMG00000019610) #24
Bushbaby	MODERN SPECIES	175	RTP4 (ENSOGAG00000001301)	SST (ENSOGAG00000025929) #7	RTP2 (ENSOGAG00000029969) #8	BCL6 (ENSOGAG00000007638) #9	ENSOGAG00000031870	LPP (ENSOGAG00000004548) #11	TPRG1 (ENSOGAG00000003837) #12	ENSOGAG00000026020	TP63 (ENSOGAG00000003838) #13	P3H2 (ENSOGAG00000003842) #14	CLDN1 (ENSOGAG00000008451) #15	CLDN16 (ENSOGAG00000002915) #16	IL1RAP (ENSOGAG00000009256) #18	GMNC (ENSOGAG00000000798) #19	OSTN (ENSOGAG00000007086) #20	CCDC50 (ENSOGAG00000007089) #22	ENSOGAG00000032804	ENSOGAG00000033253	FGF12 (ENSOGAG00000010039) #23	MB21D2 (ENSOGAG00000007155) #24	PLAAT1 (ENSOGAG00000004769) #25	ENSOGAG00000029500	ATP13A5 (ENSOGAG00000006643) #26	ATP13A4 (ENSOGAG00000006651) #27	OPA1 (ENSOGAG00000005712) #28	HES1 (ENSOGAG00000032425) #29	CPN2 (ENSOGAG00000017220) #30	LRRC15 (ENSOGAG00000027454) #31	GP5 (ENSOGAG00000034653) #32	ATP13A3 (ENSOGAG00000002930) #33	ENSOGAG00000027864
Laurasiatheria	ANCESTRAL SPECIES	2	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT01030000234960
Eulipotyphla	ANCESTRAL SPECIES	1887															ENSGT00390000001750 #20	ENSGT00390000011058.b #22
Hedgehog	MODERN SPECIES	4757																CCDC50 (ENSEEUG00000006092) #22
Common shrew	MODERN SPECIES	6271														OSTN (ENSSARG00000007122) #20	ENSSARG00000007131	CCDC50 (ENSSARG00000007137) #22
Laurasiatheria_a	ANCESTRAL SPECIES	3	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT01030000234960
Laurasiatheria_b	ANCESTRAL SPECIES	2	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT01030000234960
Carnivora	ANCESTRAL SPECIES	10	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT01030000234960	ENSGT00940000161593 #36
Caniformia	ANCESTRAL SPECIES		ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT01030000234960	ENSGT00940000161593 #36
Caniformia_b	ANCESTRAL SPECIES		ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36	ENSGT00940000158154 #37
Ursidae	ANCESTRAL SPECIES	1	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000153558.a	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36
Ursus	ANCESTRAL SPECIES	22	ENSGT00950000183084.b.b	ENSGT00940000162610	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000153558.a	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36	ENSGT00940000158154 #37
Polar bear	MODERN SPECIES	270	MASP1 (ENSUMAG00000004082)	ENSUMAG00000004042	SST (ENSUMAG00000004039) #7	RTP2 (ENSUMAG00000004030) #8	BCL6 (ENSUMAG00000004023) #9	LPP (ENSUMAG00000004009) #11	TPRG1 (ENSUMAG00000003984) #12	TP63 (ENSUMAG00000003864) #13	P3H2 (ENSUMAG00000003698) #14	CLDN1 (ENSUMAG00000003671) #15	CLDN16 (ENSUMAG00000003649) #16	TMEM207 (ENSUMAG00000003631) #17	IL1RAP (ENSUMAG00000003608) #18	OSTN (ENSUMAG00000003599) #20	UTS2B (ENSUMAG00000003588) #21	CCDC50 (ENSUMAG00000003555) #22	ENSUMAG00000003534	FGF12 (ENSUMAG00000003529) #23	MB21D2 (ENSUMAG00000003520) #24	PLAAT1 (ENSUMAG00000003507) #25	ATP13A5 (ENSUMAG00000003463) #26	ATP13A4 (ENSUMAG00000003397) #27	OPA1 (ENSUMAG00000001214) #28	ENSUMAG00000000929 #29	LRRC15 (ENSUMAG00000000914) #31	ATP13A3 (ENSUMAG00000000893) #33	TMEM44 (ENSUMAG00000000863) #34	LSG1 (ENSUMAG00000000855) #35	FAM43A (ENSUMAG00000000850) #36
American black bear	MODERN SPECIES	4328														OSTN (ENSUAMG00000011677) #20	UTS2B (ENSUAMG00000011674) #21	CCDC50 (ENSUAMG00000011672) #22
Giant Panda	MODERN SPECIES		SST (ENSAMEG00000026741) #7	RTP2 (ENSAMEG00000000837) #8	ENSAMEG00000028266	BCL6 (ENSAMEG00000000812) #9	LPP (ENSAMEG00000000808) #11	TPRG1 (ENSAMEG00000000807) #12	TP63 (ENSAMEG00000000763) #13	P3H2 (ENSAMEG00000000726) #14	CLDN1 (ENSAMEG00000029375) #15	CLDN16 (ENSAMEG00000011529) #16	TMEM207 (ENSAMEG00000011541) #17	IL1RAP (ENSAMEG00000011547) #18	GMNC (ENSAMEG00000029444) #19	OSTN (ENSAMEG00000011573) #20	UTS2B (ENSAMEG00000011579) #21	CCDC50 (ENSAMEG00000011582) #22	ENSAMEG00000031103	FGF12 (ENSAMEG00000008849) #23	MB21D2 (ENSAMEG00000027048) #24	PLAAT1 (ENSAMEG00000015962) #25	ATP13A5 (ENSAMEG00000015940) #26	ATP13A4 (ENSAMEG00000015895) #27	OPA1 (ENSAMEG00000015870) #28	HES1 (ENSAMEG00000027483) #29	CPN2 (ENSAMEG00000018772) #30	LRRC15 (ENSAMEG00000029139) #31	GP5 (ENSAMEG00000025806) #32	ATP13A3 (ENSAMEG00000009323) #33	TMEM44 (ENSAMEG00000009330) #34	LSG1 (ENSAMEG00000009343) #35	FAM43A (ENSAMEG00000018929) #36
Mustelinae	ANCESTRAL SPECIES	20	ENSGT00940000162610	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36	ENSGT00940000158154 #37
Ferret	MODERN SPECIES	176	RTP2 (ENSMPUG00000003405) #8	BCL6 (ENSMPUG00000003415) #9	ENSMPUG00000003420	LPP (ENSMPUG00000003425) #11	TPRG1 (ENSMPUG00000003430) #12	ENSMPUG00000003435	TP63 (ENSMPUG00000003438) #13	P3H2 (ENSMPUG00000003446) #14	CLDN1 (ENSMPUG00000003456) #15	CLDN16 (ENSMPUG00000003460) #16	TMEM207 (ENSMPUG00000003478) #17	IL1RAP (ENSMPUG00000003482) #18	ENSMPUG00000003491 #19	OSTN (ENSMPUG00000003495) #20	ENSMPUG00000003503	CCDC50 (ENSMPUG00000003543) #22	ENSMPUG00000003555	FGF12 (ENSMPUG00000003559) #23	ENSMPUG00000018878	MB21D2 (ENSMPUG00000003566) #24	PLAAT1 (ENSMPUG00000003572) #25	ATP13A5 (ENSMPUG00000003578) #26	ATP13A4 (ENSMPUG00000003595) #27	OPA1 (ENSMPUG00000003627) #28	HES1 (ENSMPUG00000003643) #29	CPN2 (ENSMPUG00000018885) #30	LRRC15 (ENSMPUG00000018888) #31	GP5 (ENSMPUG00000003662) #32	ATP13A3 (ENSMPUG00000003671) #33	TMEM44 (ENSMPUG00000003726) #34	LSG1 (ENSMPUG00000003734) #35
American mink	MODERN SPECIES	115													GMNC (ENSNVIG00000010677) #19	OSTN (ENSNVIG00000010648) #20	UTS2B (ENSNVIG00000010620) #21	CCDC50 (ENSNVIG00000010600) #22	E7EQ44 (ENSNVIG00000010540) #23	M21D2 (ENSNVIG00000010522) #24	HRSL1 (ENSNVIG00000010504) #25	ATP13A5 (ENSNVIG00000010443) #26	ATP13A4 (ENSNVIG00000010358) #27	OPA1 (ENSNVIG00000009245) #28	HES1 (ENSNVIG00000009231) #29	CPN2 (ENSNVIG00000009228) #30	LRRC15 (ENSNVIG00000009225) #31	ATP13A3 (ENSNVIG00000009045) #33	TMEM44 (ENSNVIG00000009020) #34	LSG1 (ENSNVIG00000008990) #35	FAM43A (ENSNVIG00000008982) #36	XXYLT1 (ENSNVIG00000008971) #37	ACAP2 (ENSNVIG00000008841)
Canidae	ANCESTRAL SPECIES	43	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00390000011700	ENSGT01030000234621.C.b	ENSGT00390000011127	ENSGT00390000016906	ENSGT00650000094113	ENSGT00720000110080	ENSGT00390000005823	ENSGT00440000033499	ENSGT00900000141094	ENSGT00940000160146.C
Canis_lupus	ANCESTRAL SPECIES	41	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00390000011700	ENSGT01030000234621.C.b	ENSGT00390000011127	ENSGT00390000016906	ENSGT00650000094113	ENSGT00720000110080	ENSGT00390000005823	ENSGT00440000033499	ENSGT00900000141094	ENSGT00940000160146.C
Dingo	MODERN SPECIES	317		SST (ENSCAFG00020019995) #7	RTP2 (ENSCAFG00020019997) #8	BCL6 (ENSCAFG00020020000) #9	LPP (ENSCAFG00020020014) #11	TPRG1 (ENSCAFG00020020027) #12	TP63 (ENSCAFG00020020037) #13	P3H2 (ENSCAFG00020020127) #14	CLDN1 (ENSCAFG00020020148) #15	CLDN16 (ENSCAFG00020020151) #16	TMEM207 (ENSCAFG00020020153) #17	ENSCAFG00020020157 #18	GMNC (ENSCAFG00020020161) #19	OSTN (ENSCAFG00020020164) #20	UTS2B (ENSCAFG00020020166) #21	CCDC50 (ENSCAFG00020020170) #22	FGF12 (ENSCAFG00020020175) #23	MB21D2 (ENSCAFG00020020181) #24	PLAAT1 (ENSCAFG00020020183) #25	ATP13A5 (ENSCAFG00020020185) #26	ENSCAFG00020020188	ATP13A4 (ENSCAFG00020020190) #27	MFSD1 (ENSCAFG00020020193)	ENSCAFG00020020195	SCHIP1 (ENSCAFG00020020205)	ENSCAFG00020020210	IL12A (ENSCAFG00020020211)	ENSCAFG00020020215	C3orf80 (ENSCAFG00020020219)	IFT80 (ENSCAFG00020020227)	ENSCAFG00020020486
Dog	MODERN SPECIES	27	ENSCAFG00845022631	SST (ENSCAFG00845022661) #7	BCL6 (ENSCAFG00845022776) #9	ENSCAFG00845023084	LPP (ENSCAFG00845023138) #11	TPRG1 (ENSCAFG00845023344) #12	TP63 (ENSCAFG00845023542) #13	P3H2 (ENSCAFG00845023995) #14	CLDN1 (ENSCAFG00845024289) #15	CLDN16 (ENSCAFG00845024328) #16	TMEM207 (ENSCAFG00845024384) #17	IL1RAP (ENSCAFG00845024451) #18	GMNC (ENSCAFG00845024693) #19	OSTN (ENSCAFG00845024742) #20	UTS2B (ENSCAFG00845024789) #21	ENSCAFG00845024870 #22	FGF12 (ENSCAFG00845025170) #23	MB21D2 (ENSCAFG00845025337) #24	PLAAT1 (ENSCAFG00845025371) #25	ATP13A5 (ENSCAFG00845025427) #26	ENSCAFG00845025551 #27	MFSD1 (ENSCAFG00845025917)	ENSCAFG00845026201	ENSCAFG00845026384	ENSCAFG00845026774	IL12A (ENSCAFG00845026803)	ENSCAFG00845026894	ENSCAFG00845027231	C3orf80 (ENSCAFG00845027247)	IFT80 (ENSCAFG00845027305)	SMC4 (ENSCAFG00845027487)
Red fox	MODERN SPECIES	63	ENSVVUG00000013339	SST (ENSVVUG00000013351) #7	RTP2 (ENSVVUG00000013353) #8	BCL6 (ENSVVUG00000013355) #9	LPP (ENSVVUG00000013382) #11	TPRG1 (ENSVVUG00000013400) #12	TP63 (ENSVVUG00000013408) #13	P3H2 (ENSVVUG00000013454) #14	CLDN1 (ENSVVUG00000013606) #15	CLDN16 (ENSVVUG00000013608) #16	TMEM207 (ENSVVUG00000013612) #17	IL1RAP (ENSVVUG00000013626) #18	GMNC (ENSVVUG00000013674) #19	OSTN (ENSVVUG00000013688) #20	UTS2B (ENSVVUG00000013699) #21	CCDC50 (ENSVVUG00000013709) #22
Felidae	ANCESTRAL SPECIES	9	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000158744.n	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36	ENSGT00940000158154 #37
Panthera	ANCESTRAL SPECIES	12	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000158744.n	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26
Panthera_a	ANCESTRAL SPECIES	46	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000158744.n	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000153112.E.f.a.a	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24
leopard	MODERN SPECIES	41	RTP2 (ENSPPRG00000000964) #8	BCL6 (ENSPPRG00000000750) #9	ENSPPRG00000017635	LPP (ENSPPRG00000000181) #11	TPRG1 (ENSPPRG00000023849) #12	TP63 (ENSPPRG00000024443) #13	P3H2 (ENSPPRG00000014656) #14	CLDN1 (ENSPPRG00000013335) #15	CLDN16 (ENSPPRG00000012880) #16	TMEM207 (ENSPPRG00000012415) #17	IL1RAP (ENSPPRG00000011868) #18	ENSPPRG00000005651	GMNC (ENSPPRG00000005276) #19	OSTN (ENSPPRG00000005025) #20	UTS2B (ENSPPRG00000004799) #21	CCDC50 (ENSPPRG00000004419) #22	ENSPPRG00000003782	ENSPPRG00000016869	FGF12 (ENSPPRG00000003163) #23	MB21D2 (ENSPPRG00000002734) #24
lion	MODERN SPECIES	9	RTP2 (ENSPLOG00000021075) #8	BCL6 (ENSPLOG00000021028) #9	ENSPLOG00000020999	LPP (ENSPLOG00000020973) #11	TPRG1 (ENSPLOG00000020945) #12	TP63 (ENSPLOG00000020266) #13	P3H2 (ENSPLOG00000019953) #14	CLDN1 (ENSPLOG00000019915) #15	CLDN16 (ENSPLOG00000019832) #16	TMEM207 (ENSPLOG00000019781) #17	IL1RAP (ENSPLOG00000019736) #18	ENSPLOG00000019707	GMNC (ENSPLOG00000019676) #19	OSTN (ENSPLOG00000019626) #20	UTS2B (ENSPLOG00000019582) #21	CCDC50 (ENSPLOG00000019549) #22	ENSPLOG00000019518	FGF12 (ENSPLOG00000019425) #23	MB21D2 (ENSPLOG00000019380) #24	ENSPLOG00000019346	B3GNT5 (ENSPLOG00000019335)	MCF2L2 (ENSPLOG00000018925)	LAMP3 (ENSPLOG00000018830)	MCCC1 (ENSPLOG00000018464)	DCUN1D1 (ENSPLOG00000018397)	ATP11B (ENSPLOG00000018137)	ENSPLOG00000018071	SOX2 (ENSPLOG00000018057)	DNAJC19 (ENSPLOG00000017942)	ENSPLOG00000017262	CCDC39 (ENSPLOG00000016889)
Tiger	MODERN SPECIES	186	SST (ENSPTIG00000000097) #7	RTP2 (ENSPTIG00000022101) #8	ENSPTIG00000002216	BCL6 (ENSPTIG00000022010) #9	LPP (ENSPTIG00000021260) #11	TPRG1 (ENSPTIG00000020804) #12	TP63 (ENSPTIG00000019632) #13	P3H2 (ENSPTIG00000016608) #14	CLDN1 (ENSPTIG00000015844) #15	CLDN16 (ENSPTIG00000014978) #16	TMEM207 (ENSPTIG00000014639) #17	IL1RAP (ENSPTIG00000005696) #18	GMNC (ENSPTIG00000002630) #19	OSTN (ENSPTIG00000021737) #20	UTS2B (ENSPTIG00000021448) #21	CCDC50 (ENSPTIG00000018029) #22	ENSPTIG00000000734	FGF12 (ENSPTIG00000016372) #23	MB21D2 (ENSPTIG00000015590) #24	PLAAT1 (ENSPTIG00000014270) #25	ATP13A5 (ENSPTIG00000011260) #26
Cat	MODERN SPECIES	240	RTP2 (ENSFCAG00000029548) #8	BCL6 (ENSFCAG00000006810) #9	ENSFCAG00000041786	LPP (ENSFCAG00000006814) #11	TPRG1 (ENSFCAG00000002008) #12	TP63 (ENSFCAG00000000790) #13	P3H2 (ENSFCAG00000000791) #14	CLDN1 (ENSFCAG00000039047) #15	CLDN16 (ENSFCAG00000003329) #16	TMEM207 (ENSFCAG00000035479) #17	IL1RAP (ENSFCAG00000018587) #18	ENSFCAG00000006328	GMNC (ENSFCAG00000009204) #19	OSTN (ENSFCAG00000024574) #20	UTS2B (ENSFCAG00000041952) #21	CCDC50 (ENSFCAG00000026775) #22	FGF12 (ENSFCAG00000025224) #23	MB21D2 (ENSFCAG00000043235) #24	PLAAT1 (ENSFCAG00000000692) #25	ATP13A5 (ENSFCAG00000000693) #26	ATP13A4 (ENSFCAG00000042898) #27	OPA1 (ENSFCAG00000000695) #28	HES1 (ENSFCAG00000042282) #29	CPN2 (ENSFCAG00000015345) #30	LRRC15 (ENSFCAG00000031861) #31	GP5 (ENSFCAG00000035803) #32	ATP13A3 (ENSFCAG00000009317) #33	TMEM44 (ENSFCAG00000003996) #34	LSG1 (ENSFCAG00000024957) #35	XXYLT1 (ENSFCAG00000037617) #37	ACAP2 (ENSFCAG00000002057)
Laurasiatheria_c	ANCESTRAL SPECIES	2	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36
Equus	ANCESTRAL SPECIES	19	ENSGT00940000162610	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36	ENSGT00940000158154 #37
Horse	MODERN SPECIES	10	SST (ENSECAG00000023368) #7	RTP2 (ENSECAG00000000272) #8	BCL6 (ENSECAG00000004556) #9	LPP (ENSECAG00000014723) #11	TPRG1 (ENSECAG00000016072) #12	TP63 (ENSECAG00000018546) #13	ENSECAG00000044253	P3H2 (ENSECAG00000008971) #14	CLDN1 (ENSECAG00000021074) #15	CLDN16 (ENSECAG00000021850) #16	TMEM207 (ENSECAG00000033613) #17	IL1RAP (ENSECAG00000005083) #18	GMNC (ENSECAG00000027817) #19	OSTN (ENSECAG00000011502) #20	UTS2B (ENSECAG00000014512) #21	CCDC50 (ENSECAG00000014753) #22	FGF12 (ENSECAG00000024399) #23	MB21D2 (ENSECAG00000004811) #24	PLAAT1 (ENSECAG00000024565) #25	ATP13A5 (ENSECAG00000024692) #26	ATP13A4 (ENSECAG00000013520) #27	OPA1 (ENSECAG00000024248) #28	HES1 (ENSECAG00000026945) #29	CPN2 (ENSECAG00000004837) #30	LRRC15 (ENSECAG00000004894) #31	ENSECAG00000045784	GP5 (ENSECAG00000003252) #32	ATP13A3 (ENSECAG00000006749) #33	TMEM44 (ENSECAG00000014573) #34	LSG1 (ENSECAG00000017659) #35	FAM43A (ENSECAG00000014783) #36
Donkey	MODERN SPECIES	25	RTP2 (ENSEASG00005014113) #8	BCL6 (ENSEASG00005014114) #9	LPP (ENSEASG00005014117) #11	TPRG1 (ENSEASG00005000079) #12	TP63 (ENSEASG00005000161) #13	P3H2 (ENSEASG00005000187) #14	ENSEASG00005037818	CLDN1 (ENSEASG00005025461) #15	CLDN16 (ENSEASG00005038191) #16	TMEM207 (ENSEASG00005025466) #17	ENSEASG00005000289 #18	ENSEASG00005029545 #18	GMNC (ENSEASG00005038756) #19	OSTN (ENSEASG00005000308) #20	UTS2B (ENSEASG00005027479) #21	CCDC50 (ENSEASG00005000324) #22	FGF12 (ENSEASG00005025383) #23	MB21D2 (ENSEASG00005000343) #24	PLAAT1 (ENSEASG00005000347) #25	ATP13A5 (ENSEASG00005000377) #26	ATP13A4 (ENSEASG00005000615) #27	ENSEASG00005003536	OPA1 (ENSEASG00005000628) #28	HES1 (ENSEASG00005000638) #29	CPN2 (ENSEASG00005000640) #30	LRRC15 (ENSEASG00005038038) #31	GP5 (ENSEASG00005000647) #32	ATP13A3 (ENSEASG00005000655) #33	TMEM44 (ENSEASG00005000666) #34	LSG1 (ENSEASG00005000678) #35	FAM43A (ENSEASG00005037609) #36
Chiroptera	ANCESTRAL SPECIES	13	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36
Megabat	MODERN SPECIES	2966														OSTN (ENSPVAG00000006120) #20	UTS2B (ENSPVAG00000006126) #21	CCDC50 (ENSPVAG00000006129) #22
Microchiroptera	ANCESTRAL SPECIES	11	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36
Greater horseshoe bat	MODERN SPECIES	11	SST (ENSRFEG00010020558) #7	RTP2 (ENSRFEG00010020536) #8	ENSRFEG00010020523	BCL6 (ENSRFEG00010020473) #9	LPP (ENSRFEG00010020443) #11	TPRG1 (ENSRFEG00010020397) #12	TP63 (ENSRFEG00010019772) #13	P3H2 (ENSRFEG00010019654) #14	CLDN1 (ENSRFEG00010019632) #15	CLDN16 (ENSRFEG00010019557) #16	TMEM207 (ENSRFEG00010019513) #17	IL1RAP (ENSRFEG00010019458) #18	GMNC (ENSRFEG00010019408) #19	OSTN (ENSRFEG00010019354) #20	UTS2B (ENSRFEG00010019299) #21	CCDC50 (ENSRFEG00010019227) #22	FGF12 (ENSRFEG00010019116) #23	MB21D2 (ENSRFEG00010019087) #24	PLAAT1 (ENSRFEG00010019048) #25	ATP13A5 (ENSRFEG00010018763) #26	ATP13A4 (ENSRFEG00010018636) #27	OPA1 (ENSRFEG00010018391) #28	HES1 (ENSRFEG00010018315) #29	ENSRFEG00010018282	CPN2 (ENSRFEG00010018270) #30	LRRC15 (ENSRFEG00010018256) #31	GP5 (ENSRFEG00010018243) #32	ATP13A3 (ENSRFEG00010018125) #33	TMEM44 (ENSRFEG00010017809) #34	LSG1 (ENSRFEG00010017730) #35	FAM43A (ENSRFEG00010017704) #36
Microbat	MODERN SPECIES	951	MASP1 (ENSMLUG00000006168)	ENSMLUG00000006180	SST (ENSMLUG00000012903) #7	RTP2 (ENSMLUG00000015480) #8	BCL6 (ENSMLUG00000012905) #9	LPP (ENSMLUG00000009198) #11	TPRG1 (ENSMLUG00000009219) #12	TP63 (ENSMLUG00000015597) #13	P3H2 (ENSMLUG00000015613) #14	CLDN1 (ENSMLUG00000015642) #15	CLDN16 (ENSMLUG00000001753) #16	IL1RAP (ENSMLUG00000005737) #18	GMNC (ENSMLUG00000012539) #19	OSTN (ENSMLUG00000017299) #20	ENSMLUG00000024518	CCDC50 (ENSMLUG00000012788) #22	FGF12 (ENSMLUG00000010464) #23	PLAAT1 (ENSMLUG00000008414) #25	ATP13A5 (ENSMLUG00000010577) #26	ATP13A4 (ENSMLUG00000008427) #27	OPA1 (ENSMLUG00000008480) #28	ENSMLUG00000008079	HES1 (ENSMLUG00000008549) #29	CPN2 (ENSMLUG00000015542) #30	LRRC15 (ENSMLUG00000028059) #31	GP5 (ENSMLUG00000024852) #32	ATP13A3 (ENSMLUG00000014164) #33	ENSMLUG00000030450	LSG1 (ENSMLUG00000012548) #35	FAM43A (ENSMLUG00000001955) #36	ENSMLUG00000026353
Artiodactyla	ANCESTRAL SPECIES	2	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36
Suina	ANCESTRAL SPECIES	1	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36	ENSGT00940000158154 #37
Chacoan peccary	MODERN SPECIES	944	SST (ENSCWAG00000019978) #7	RTP2 (ENSCWAG00000019985) #8	BCL6 (ENSCWAG00000019996) #9	ENSCWAG00000020023	LPP (ENSCWAG00000020035) #11	TPRG1 (ENSCWAG00000020051) #12	TP63 (ENSCWAG00000020115) #13	P3H2 (ENSCWAG00000021197) #14	CLDN1 (ENSCWAG00000021217) #15	CLDN16 (ENSCWAG00000021225) #16	TMEM207 (ENSCWAG00000021235) #17	IL1RAP (ENSCWAG00000021249) #18	GMNC (ENSCWAG00000021265) #19	OSTN (ENSCWAG00000021276) #20	UTS2B (ENSCWAG00000021288) #21	CCDC50 (ENSCWAG00000021300) #22	FGF12 (ENSCWAG00000021322) #23	MB21D2 (ENSCWAG00000011739) #24	PLAAT1 (ENSCWAG00000011773) #25	ATP13A5 (ENSCWAG00000011818) #26	ATP13A4 (ENSCWAG00000012173) #27	OPA1 (ENSCWAG00000012866) #28	HES1 (ENSCWAG00000013483) #29	CPN2 (ENSCWAG00000013513) #30	LRRC15 (ENSCWAG00000013529) #31	GP5 (ENSCWAG00000013542) #32	ATP13A3 (ENSCWAG00000013581) #33	TMEM44 (ENSCWAG00000013875) #34	LSG1 (ENSCWAG00000014095) #35	FAM43A (ENSCWAG00000014119) #36	XXYLT1 (ENSCWAG00000014129) #37
Pig	MODERN SPECIES	4	RTP2 (ENSSSCG00000011809) #8	BCL6 (ENSSSCG00000011810) #9	ENSSSCG00000057877	LPP (ENSSSCG00000011811) #11	ENSSSCG00000043849	TPRG1 (ENSSSCG00000011812) #12	TP63 (ENSSSCG00000025592) #13	P3H2 (ENSSSCG00000011813) #14	CLDN1 (ENSSSCG00000040904) #15	CLDN16 (ENSSSCG00000024788) #16	TMEM207 (ENSSSCG00000022341) #17	ENSSSCG00000021206	GMNC (ENSSSCG00000024420) #19	OSTN (ENSSSCG00000031478) #20	UTS2B (ENSSSCG00000053547) #21	CCDC50 (ENSSSCG00000036423) #22	FGF12 (ENSSSCG00000038584) #23	ENSSSCG00000044432	MB21D2 (ENSSSCG00000011819) #24	ENSSSCG00000048327	PLAAT1 (ENSSSCG00000036094) #25	ATP13A5 (ENSSSCG00000026260) #26	ATP13A4 (ENSSSCG00000011821) #27	OPA1 (ENSSSCG00000011822) #28	HES1 (ENSSSCG00000031356) #29	CPN2 (ENSSSCG00000025128) #30	LRRC15 (ENSSSCG00000026868) #31	GP5 (ENSSSCG00000031035) #32	ATP13A3 (ENSSSCG00000011825) #33	TMEM44 (ENSSSCG00000011826) #34	LSG1 (ENSSSCG00000011827) #35
Artiodactyla_a	ANCESTRAL SPECIES	8	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36
Camelidae	ANCESTRAL SPECIES		ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36	ENSGT00940000158154 #37
Alpaca	MODERN SPECIES	2852				LPP (ENSVPAG00000012347) #11	TPRG1 (ENSVPAG00000012349) #12	TP63 (ENSVPAG00000012350) #13	P3H2 (ENSVPAG00000012351) #14	CLDN1 (ENSVPAG00000012354) #15	CLDN16 (ENSVPAG00000012355) #16	TMEM207 (ENSVPAG00000012357) #17	IL1RAP (ENSVPAG00000012359) #18	ENSVPAG00000012360 #18	GMNC (ENSVPAG00000012361) #19	OSTN (ENSVPAG00000012362) #20	UTS2B (ENSVPAG00000012364) #21	CCDC50 (ENSVPAG00000012365) #22
Arabian camel	MODERN SPECIES		RTP2 (ENSCDRG00005007401) #8	BCL6 (ENSCDRG00005007418) #9	ENSCDRG00005007515	LPP (ENSCDRG00005007543) #11	TPRG1 (ENSCDRG00005007649) #12	TP63 (ENSCDRG00005007787) #13	P3H2 (ENSCDRG00005010783) #14	ENSCDRG00005010844	CLDN1 (ENSCDRG00005010879) #15	CLDN16 (ENSCDRG00005010916) #16	TMEM207 (ENSCDRG00005010976) #17	IL1RAP (ENSCDRG00005011046) #18	GMNC (ENSCDRG00005011210) #19	OSTN (ENSCDRG00005011267) #20	UTS2B (ENSCDRG00005011361) #21	CCDC50 (ENSCDRG00005011408) #22	FGF12 (ENSCDRG00005011577) #23	MB21D2 (ENSCDRG00005011736) #24	ENSCDRG00005011770	PLAAT1 (ENSCDRG00005011790) #25	ATP13A5 (ENSCDRG00005011840) #26	ATP13A4 (ENSCDRG00005012102) #27	OPA1 (ENSCDRG00005012481) #28	HES1 (ENSCDRG00005013252) #29	ENSCDRG00005013322	CPN2 (ENSCDRG00005013331) #30	LRRC15 (ENSCDRG00005013342) #31	GP5 (ENSCDRG00005013363) #32	ATP13A3 (ENSCDRG00005013410) #33	TMEM44 (ENSCDRG00005014017) #34	LSG1 (ENSCDRG00005014151) #35
Artiodactyla_b	ANCESTRAL SPECIES	6	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36
Pecora	ANCESTRAL SPECIES	8	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36
Yarkand deer	MODERN SPECIES	10	SST (ENSCHYG00000017690) #7	RTP2 (ENSCHYG00000017671) #8	BCL6 (ENSCHYG00000017496) #9	LPP (ENSCHYG00000017341) #11	ENSCHYG00000017326	TPRG1 (ENSCHYG00000017253) #12	TP63 (ENSCHYG00000016948) #13	P3H2 (ENSCHYG00000016707) #14	CLDN1 (ENSCHYG00000016635) #15	CLDN16 (ENSCHYG00000016587) #16	TMEM207 (ENSCHYG00000016540) #17	IL1RAP (ENSCHYG00000016282) #18	GMNC (ENSCHYG00000016158) #19	OSTN (ENSCHYG00000015998) #20	UTS2B (ENSCHYG00000015889) #21	CCDC50 (ENSCHYG00000015774) #22	ENSCHYG00000015730	FGF12 (ENSCHYG00000015431) #23	ENSCHYG00000015377	MB21D2 (ENSCHYG00000015341) #24	PLAAT1 (ENSCHYG00000015170) #25	ATP13A5 (ENSCHYG00000014857) #26	ATP13A4 (ENSCHYG00000014600) #27	ENSCHYG00000014541	OPA1 (ENSCHYG00000013079) #28	ENSCHYG00000012812	CPN2 (ENSCHYG00000012772) #30	LRRC15 (ENSCHYG00000012762) #31	ENSCHYG00000012738	GP5 (ENSCHYG00000012706) #32	ATP13A3 (ENSCHYG00000012061) #33
Percora_a	ANCESTRAL SPECIES	7	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36
Bovidae	ANCESTRAL SPECIES	9	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36
Bovinae	ANCESTRAL SPECIES	6	ENSGT00970000194716	ENSGT00940000156311 #9	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00950000182901.a.a.b.b.a.a.d	ENSGT00940000153270.b.b #19	ENSGT01100000263474.a.b.b.f.g.a.a.b	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36	ENSGT00940000158154 #37
Bos	ANCESTRAL SPECIES	7	ENSGT00970000194716	ENSGT00940000156311 #9	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00950000182901.a.a.b.b.a.a.d	ENSGT00940000153270.b.b #19	ENSGT01100000263474.a.b.b.f.g.a.a.b	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851.n #28	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36	ENSGT00940000158154 #37
Bos_a	ANCESTRAL SPECIES	5	ENSGT00940000156311 #9	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00960000190428	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00950000182901.a.a.b.b.a.a.d.o.a	ENSGT00940000153270.b.b #19	ENSGT01100000263474.a.b.b.f.g.a.a.b	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851.n #28	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36	ENSGT00940000158154 #37
Domestic yak	MODERN SPECIES		ENSBGRG00000001094	TPRG1 (ENSBGRG00000001062) #12	ENSBGRG00000001043	TP63 (ENSBGRG00000000889) #13	P3H2 (ENSBGRG00000000817) #14	CLDN1 (ENSBGRG00000000800) #15	CLDN16 (ENSBGRG00000000794) #16	TMEM207 (ENSBGRG00000000757) #17	ENSBGRG00000000718 #18	ENSBGRG00000000707 #18	ENSBGRG00000000686	GMNC (ENSBGRG00000000645) #19	ENSBGRG00000000635	OSTN (ENSBGRG00000000606) #20	ENSBGRG00000000579 #21	CCDC50 (ENSBGRG00000000499) #22	FGF12 (ENSBGRG00000000418) #23	ENSBGRG00000000390	ENSBGRG00000000382	MB21D2 (ENSBGRG00000000376) #24	PLAAT1 (ENSBGRG00000000331) #25	ATP13A5 (ENSBGRG00000000250) #26	ATP13A4 (ENSBGRG00000000183) #27	ENSBGRG00000024652 #28	HES1 (ENSBGRG00000024386) #29	CPN2 (ENSBGRG00000024371) #30	LRRC15 (ENSBGRG00000024363) #31	GP5 (ENSBGRG00000024310) #32	ATP13A3 (ENSBGRG00000023744) #33	TMEM44 (ENSBGRG00000023581) #34	LSG1 (ENSBGRG00000023529) #35
Wild yak	MODERN SPECIES	1254														OSTN (ENSBMUG00000020212) #20	UTS2B (ENSBMUG00000020202) #21	CCDC50 (ENSBMUG00000020188) #22
Bos_b	ANCESTRAL SPECIES	5	ENSGT00940000156311 #9	ENSGT01100000263481.n.a.b.a.b.a.b.a.a.b.b.b	ENSGT00940000162286.a.a.e.b.b.a.a.a.a	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT01100000263474.a.b.b.f.g.a.a.b	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00970000196977	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851.n #28	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36
Cow	MODERN SPECIES		BCL6 (ENSBTAG00000001511) #9	ENSBTAG00000049984	LPP (ENSBTAG00000044001) #11	TPRG1 (ENSBTAG00000032538) #12	ENSBTAG00000053900	TP63 (ENSBTAG00000015460) #13	P3H2 (ENSBTAG00000021025) #14	CLDN1 (ENSBTAG00000013148) #15	CLDN16 (ENSBTAG00000006494) #16	TMEM207 (ENSBTAG00000013456) #17	IL1RAP (ENSBTAG00000013205) #18	GMNC (ENSBTAG00000051592) #19	ENSBTAG00000050537	OSTN (ENSBTAG00000018703) #20	UTS2B (ENSBTAG00000044148) #21	CCDC50 (ENSBTAG00000006945) #22	ENSBTAG00000054301	FGF12 (ENSBTAG00000012413) #23	MB21D2 (ENSBTAG00000005430) #24	PLAAT1 (ENSBTAG00000035844) #25	ATP13A5 (ENSBTAG00000018657) #26	ATP13A4 (ENSBTAG00000016305) #27	OPA1 (ENSBTAG00000019514) #28	HES1 (ENSBTAG00000000569) #29	CPN2 (ENSBTAG00000032656) #30	LRRC15 (ENSBTAG00000038600) #31	GP5 (ENSBTAG00000013203) #32	ATP13A3 (ENSBTAG00000013204) #33	TMEM44 (ENSBTAG00000002394) #34	LSG1 (ENSBTAG00000008461) #35	FAM43A (ENSBTAG00000008462) #36
Hybrid Bos Indicus	MODERN SPECIES		BCL6 (ENSBIXG00005025078) #9	ENSBIXG00005025147	ENSBIXG00005025160	LPP (ENSBIXG00005004284) #11	TPRG1 (ENSBIXG00005025267) #12	TP63 (ENSBIXG00005025509) #13	P3H2 (ENSBIXG00005025614) #14	CLDN1 (ENSBIXG00005004371) #15	CLDN16 (ENSBIXG00005025682) #16	TMEM207 (ENSBIXG00005025717) #17	ENSBIXG00005004391	IL1RAP (ENSBIXG00005025810) #18	GMNC (ENSBIXG00005025876) #19	OSTN (ENSBIXG00005025981) #20	UTS2B (ENSBIXG00005025999) #21	CCDC50 (ENSBIXG00005026051) #22	ENSBIXG00005026076	FGF12 (ENSBIXG00005026154) #23	ENSBIXG00005026210	MB21D2 (ENSBIXG00005026221) #24	PLAAT1 (ENSBIXG00005026278) #25	ATP13A5 (ENSBIXG00005026564) #26	ATP13A4 (ENSBIXG00005026726) #27	OPA1 (ENSBIXG00005026898) #28	HES1 (ENSBIXG00005026988) #29	CPN2 (ENSBIXG00005027039) #30	LRRC15 (ENSBIXG00005027046) #31	GP5 (ENSBIXG00005004647) #32	ATP13A3 (ENSBIXG00005027247) #33	ENSBIXG00005027317	TMEM44 (ENSBIXG00005004715) #34
American bison	MODERN SPECIES	3208					TP63 (ENSBBBG00000021297) #13	P3H2 (ENSBBBG00000021369) #14	CLDN1 (ENSBBBG00000021383) #15	CLDN16 (ENSBBBG00000021401) #16	TMEM207 (ENSBBBG00000021413) #17	IL1RAP (ENSBBBG00000021436) #18	ENSBBBG00000021441	GMNC (ENSBBBG00000021447) #19	ENSBBBG00000021454	OSTN (ENSBBBG00000008403) #20	UTS2B (ENSBBBG00000021479) #21	CCDC50 (ENSBBBG00000021524) #22
Caprinae	ANCESTRAL SPECIES	8	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00860000135828	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36
Goat	MODERN SPECIES		SST (ENSCHIG00000006692) #7	RTP2 (ENSCHIG00000017784) #8	BCL6 (ENSCHIG00000026477) #9	ENSCHIG00000000926	LPP (ENSCHIG00000021547) #11	TPRG1 (ENSCHIG00000004964) #12	TP63 (ENSCHIG00000023662) #13	P3H2 (ENSCHIG00000011298) #14	CLDN1 (ENSCHIG00000021260) #15	CLDN16 (ENSCHIG00000020420) #16	TMEM207 (ENSCHIG00000025327) #17	IL1RAP (ENSCHIG00000017471) #18	GMNC (ENSCHIG00000023300) #19	OSTN (ENSCHIG00000021138) #20	UTS2B (ENSCHIG00000012258) #21	CCDC50 (ENSCHIG00000019160) #22	ENSCHIG00000007644	FGF12 (ENSCHIG00000015401) #23	MB21D2 (ENSCHIG00000020817) #24	PLAAT1 (ENSCHIG00000025900) #25	ATP13A5 (ENSCHIG00000011142) #26	ATP13A4 (ENSCHIG00000012653) #27	OPA1 (ENSCHIG00000014105) #28	HES1 (ENSCHIG00000017929) #29	ENSCHIG00000027056	CPN2 (ENSCHIG00000011103) #30	LRRC15 (ENSCHIG00000016500) #31	GP5 (ENSCHIG00000004724) #32	ATP13A3 (ENSCHIG00000024773) #33	TMEM44 (ENSCHIG00000009140) #34	LSG1 (ENSCHIG00000015769) #35
Siberian musk deer	MODERN SPECIES	138														OSTN (ENSMMSG00000005335) #20	UTS2B (ENSMMSG00000005290) #21	CCDC50 (ENSMMSG00000005179) #22	FGF12 (ENSMMSG00000005073) #23	MB21D2 (ENSMMSG00000005047) #24	PLAAT1 (ENSMMSG00000005029) #25	ATP13A5 (ENSMMSG00000004877) #26	ATP13A4 (ENSMMSG00000004745) #27	OPA1 (ENSMMSG00000004391) #28	HES1 (ENSMMSG00000004314) #29	CPN2 (ENSMMSG00000004307) #30	LRRC15 (ENSMMSG00000004303) #31	ENSMMSG00000004290 #32	ATP13A3 (ENSMMSG00000004202) #33	TMEM44 (ENSMMSG00000004167) #34	LSG1 (ENSMMSG00000004148) #35	FAM43A (ENSMMSG00000004141) #36	XXYLT1 (ENSMMSG00000004134) #37
Cetacea	ANCESTRAL SPECIES	10	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327.j #26	ENSGT00940000160327.i #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36
Odontoceti	ANCESTRAL SPECIES	9	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327.j #26	ENSGT00940000160327.i #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36
Odontoceti_a	ANCESTRAL SPECIES	8	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327.j #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36	ENSGT00940000158154 #37
Dolphin	MODERN SPECIES	5021														OSTN (ENSTTRG00000008492) #20	UTS2B (ENSTTRG00000008513) #21	CCDC50 (ENSTTRG00000008527) #22
Odontoceti_b	ANCESTRAL SPECIES	9	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00970000194716	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327.j #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36	ENSGT00940000158154 #37
Monodontidae	ANCESTRAL SPECIES	11	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00970000194716	ENSGT00940000156311 #9	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327.j #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36	ENSGT00390000017580.cb
Narwhal	MODERN SPECIES	297	ENSMMNG00015001911	ENSMMNG00015001892	LPP (ENSMMNG00015001868) #11	TPRG1 (ENSMMNG00015001838) #12	ENSMMNG00015001800	TP63 (ENSMMNG00015001263) #13	P3H2 (ENSMMNG00015000991) #14	CLDN1 (ENSMMNG00015000969) #15	CLDN16 (ENSMMNG00015000943) #16	TMEM207 (ENSMMNG00015000920) #17	IL1RAP (ENSMMNG00015000904) #18	ENSMMNG00015000885	GMNC (ENSMMNG00015000864) #19	OSTN (ENSMMNG00015000827) #20	UTS2B (ENSMMNG00015000803) #21	CCDC50 (ENSMMNG00015000742) #22	FGF12 (ENSMMNG00015000675) #23	MB21D2 (ENSMMNG00015000643) #24	PLAAT1 (ENSMMNG00015000616) #25	ENSMMNG00015000590 #26	ATP13A4 (ENSMMNG00015000483) #27	OPA1 (ENSMMNG00015000267) #28	HES1 (ENSMMNG00015000127) #29	CPN2 (ENSMMNG00015000111) #30	LRRC15 (ENSMMNG00015000103) #31	GP5 (ENSMMNG00015000092) #32	ATP13A3 (ENSMMNG00015000058) #33	TMEM44 (ENSMMNG00015009109) #34	LSG1 (ENSMMNG00015009089) #35	FAM43A (ENSMMNG00015009084) #36	ENSMMNG00015009077
Beluga whale	MODERN SPECIES	111	SST (ENSDLEG00000014194) #7	RTP2 (ENSDLEG00000014176) #8	BCL6 (ENSDLEG00000014141) #9	ENSDLEG00000014118	LPP (ENSDLEG00000014060) #11	TP63 (ENSDLEG00000014028) #13	P3H2 (ENSDLEG00000014000) #14	CLDN1 (ENSDLEG00000013985) #15	CLDN16 (ENSDLEG00000013947) #16	TMEM207 (ENSDLEG00000013928) #17	IL1RAP (ENSDLEG00000013874) #18	ENSDLEG00000013856	GMNC (ENSDLEG00000013848) #19	OSTN (ENSDLEG00000013834) #20	UTS2B (ENSDLEG00000013820) #21	ENSDLEG00000013808 #22	ENSDLEG00000013767	FGF12 (ENSDLEG00000013746) #23	MB21D2 (ENSDLEG00000013738) #24	PLAAT1 (ENSDLEG00000013734) #25	ENSDLEG00000013701 #26	ENSDLEG00000013202 #27	OPA1 (ENSDLEG00000013029) #28	ENSDLEG00000013004	HES1 (ENSDLEG00000012988) #29	CPN2 (ENSDLEG00000012978) #30	LRRC15 (ENSDLEG00000012973) #31	GP5 (ENSDLEG00000012963) #32	ATP13A3 (ENSDLEG00000012849) #33	TMEM44 (ENSDLEG00000012819) #34	LSG1 (ENSDLEG00000012787) #35
Vaquita	MODERN SPECIES	15	SST (ENSPSNG00000010259) #7	RTP2 (ENSPSNG00000010300) #8	BCL6 (ENSPSNG00000010360) #9	ENSPSNG00000010530	LPP (ENSPSNG00000010571) #11	TPRG1 (ENSPSNG00000010703) #12	TP63 (ENSPSNG00000010992) #13	P3H2 (ENSPSNG00000012524) #14	CLDN1 (ENSPSNG00000012587) #15	CLDN16 (ENSPSNG00000012645) #16	TMEM207 (ENSPSNG00000012768) #17	IL1RAP (ENSPSNG00000012840) #18	GMNC (ENSPSNG00000012883) #19	OSTN (ENSPSNG00000013002) #20	UTS2B (ENSPSNG00000013104) #21	CCDC50 (ENSPSNG00000013184) #22	FGF12 (ENSPSNG00000013300) #23	MB21D2 (ENSPSNG00000013469) #24	PLAAT1 (ENSPSNG00000013517) #25	ENSPSNG00000013682 #26	ATP13A4 (ENSPSNG00000013737) #27	OPA1 (ENSPSNG00000014797) #28	HES1 (ENSPSNG00000015218) #29	CPN2 (ENSPSNG00000015275) #30	LRRC15 (ENSPSNG00000015293) #31	GP5 (ENSPSNG00000015334) #32	ATP13A3 (ENSPSNG00000015373) #33	TMEM44 (ENSPSNG00000015566) #34	LSG1 (ENSPSNG00000015674) #35	FAM43A (ENSPSNG00000015725) #36	XXYLT1 (ENSPSNG00000015760) #37
Sperm whale	MODERN SPECIES		LPP (ENSPCTG00005011538) #11	ENSPCTG00005011642	TP63 (ENSPCTG00005011746) #13	P3H2 (ENSPCTG00005012805) #14	CLDN1 (ENSPCTG00005012944) #15	ENSPCTG00005012987	CLDN16 (ENSPCTG00005013068) #16	TMEM207 (ENSPCTG00005013237) #17	IL1RAP (ENSPCTG00005013329) #18	ENSPCTG00005013425	GMNC (ENSPCTG00005013478) #19	ENSPCTG00005013567	OSTN (ENSPCTG00005013650) #20	UTS2B (ENSPCTG00005013768) #21	ENSPCTG00005013863	CCDC50 (ENSPCTG00005013919) #22	ENSPCTG00005014030	FGF12 (ENSPCTG00005014058) #23	MB21D2 (ENSPCTG00005014234) #24	PLAAT1 (ENSPCTG00005014276) #25	ENSPCTG00005014337 #26	ENSPCTG00005014486 #26	ATP13A4 (ENSPCTG00005014578) #27	OPA1 (ENSPCTG00005015582) #28	ENSPCTG00005016239	CPN2 (ENSPCTG00005000205) #30	LRRC15 (ENSPCTG00005000209) #31	GP5 (ENSPCTG00005000212) #32	ATP13A3 (ENSPCTG00005000240) #33	TMEM44 (ENSPCTG00005000320) #34	LSG1 (ENSPCTG00005000341) #35
Blue whale	MODERN SPECIES	15	RTP2 (ENSBMSG00010009198) #8	ENSBMSG00010009203	BCL6 (ENSBMSG00010009207) #9	ENSBMSG00010009218	LPP (ENSBMSG00010009229) #11	TPRG1 (ENSBMSG00010009246) #12	TP63 (ENSBMSG00010009317) #13	P3H2 (ENSBMSG00010009465) #14	CLDN1 (ENSBMSG00010009478) #15	CLDN16 (ENSBMSG00010009495) #16	TMEM207 (ENSBMSG00010009508) #17	IL1RAP (ENSBMSG00010009519) #18	GMNC (ENSBMSG00010009539) #19	ENSBMSG00010009554	OSTN (ENSBMSG00010009565) #20	ENSBMSG00010009595 #22	ENSBMSG00010009684	ENSBMSG00010009690	FGF12 (ENSBMSG00010009720) #23	MB21D2 (ENSBMSG00010009752) #24	PLAAT1 (ENSBMSG00010000066) #25	ENSBMSG00010000078 #26	ENSBMSG00010000095 #26	ATP13A4 (ENSBMSG00010000158) #27	OPA1 (ENSBMSG00010000324) #28	HES1 (ENSBMSG00010000386) #29	ENSBMSG00010000403	CPN2 (ENSBMSG00010000416) #30	LRRC15 (ENSBMSG00010000438) #31	GP5 (ENSBMSG00010000449) #32	ATP13A3 (ENSBMSG00010000498) #33
Atlantogenata	ANCESTRAL SPECIES	19	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00560000078510	ENSGT00940000156311 #9	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00940000163072 #30	ENSGT00940000161771 #31	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000161593 #36	ENSGT00940000158154 #37
Afrotheria	ANCESTRAL SPECIES	17	ENSGT00940000161858	ENSGT00950000183084.b.b	ENSGT00940000162610	ENSGT00510000047914.b #7	ENSGT00940000156311 #9	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000158154 #37	ENSGT00940000156389.a	ENSGT00390000004757	ENSGT00510000046981
Tenrec	MODERN SPECIES	4604																CCDC50 (ENSETEG00000020213) #22
Afrotheria_a	ANCESTRAL SPECIES	16	ENSGT00950000183084.b.b	ENSGT00940000162610	ENSGT00510000047914.b #7	ENSGT00940000162172 #8	ENSGT00940000156311 #9	ENSGT00940000156022.b #11	ENSGT00390000001652.f.b #12	ENSGT00950000183153.c.b.a.a #13	ENSGT00940000159593 #14	ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000003511 #21	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24	ENSGT00940000156634 #25	ENSGT00940000160327 #26	ENSGT00940000159448 #27	ENSGT00550000074851 #28	ENSGT00940000159619.a #29	ENSGT00940000162953 #32	ENSGT00940000155941.A #33	ENSGT00390000018718 #34	ENSGT00940000156442 #35	ENSGT00940000158154 #37	ENSGT00940000156389.a	ENSGT00390000004757	ENSGT00510000046981
Elephant	MODERN SPECIES	261	MASP1 (ENSLAFG00000010815)	ENSLAFG00000027127	SST (ENSLAFG00000012303) #7	RTP2 (ENSLAFG00000031797) #8	BCL6 (ENSLAFG00000012300) #9	LPP (ENSLAFG00000011164) #11	TPRG1 (ENSLAFG00000004575) #12	TP63 (ENSLAFG00000031461) #13	P3H2 (ENSLAFG00000007727) #14	CLDN1 (ENSLAFG00000008035) #15	CLDN16 (ENSLAFG00000008037) #16	IL1RAP (ENSLAFG00000018066) #18	GMNC (ENSLAFG00000022635) #19	OSTN (ENSLAFG00000000875) #20	UTS2B (ENSLAFG00000026160) #21	CCDC50 (ENSLAFG00000013101) #22	FGF12 (ENSLAFG00000013222) #23	MB21D2 (ENSLAFG00000006749) #24	PLAAT1 (ENSLAFG00000008441) #25	ATP13A5 (ENSLAFG00000016216) #26	ATP13A4 (ENSLAFG00000001360) #27	OPA1 (ENSLAFG00000001362) #28	HES1 (ENSLAFG00000008932) #29	GP5 (ENSLAFG00000002812) #32	ATP13A3 (ENSLAFG00000018243) #33	ENSLAFG00000012914 #34	LSG1 (ENSLAFG00000012919) #35	ENSLAFG00000030271	ENSLAFG00000030936 #37	ACAP2 (ENSLAFG00000017077)	ENSLAFG00000012010
Xenarthra	ANCESTRAL SPECIES	546										ENSGT00940000155387 #15	ENSGT00730000111162 #16	ENSGT00390000006126 #17	ENSGT01090000260076.a #18	ENSGT00940000153270.b.b #19	ENSGT00390000001750 #20	ENSGT00390000011058.b #22	ENSGT00940000155929 #23	ENSGT01050000244976.b.a #24
Sloth	MODERN SPECIES	4229																CCDC50 (ENSCHOG00000003664) #22
Armadillo	MODERN SPECIES	1765									CLDN1 (ENSDNOG00000042553) #15	CLDN16 (ENSDNOG00000034208) #16	ENSDNOG00000046365 #17	IL1RAP (ENSDNOG00000007550) #18	GMNC (ENSDNOG00000034555) #19	ENSDNOG00000038437	OSTN (ENSDNOG00000024527) #20	CCDC50 (ENSDNOG00000039685) #22	FGF12 (ENSDNOG00000008869) #23	ENSDNOG00000044353	MB21D2 (ENSDNOG00000039656) #24	ENSDNOG00000039205	ENSDNOG00000033180