Fungi/Metazoa group	ANCESTRAL SPECIES																	ENSGT00440000039203 #22
Bilateria	ANCESTRAL SPECIES																	ENSGT00440000039203 #22
Chordata	ANCESTRAL SPECIES																	ENSGT00440000039203 #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00440000039203 #22
Gnathostomata	ANCESTRAL SPECIES	152							ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000161826.C	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347 #29
Euteleostomi	ANCESTRAL SPECIES	192						ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00390000001347 #29	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00940000165010	ENSGT00920000149129 #30
Sarcopterygii	ANCESTRAL SPECIES	213						ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000161826.C	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00940000165010	ENSGT00920000149129 #30
Tetrapoda	ANCESTRAL SPECIES	76		ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840 #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00940000165010	ENSGT00920000149129 #30	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37	ENSGT00940000158594	ENSGT00390000016774	ENSGT00530000063801.a
Amniota	ANCESTRAL SPECIES	5	ENSGT00940000154485.A	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840 #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347 #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00950000182979.a.b.a ##32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Mammalia	ANCESTRAL SPECIES	8	ENSGT00940000163233 #7	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840 #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347 #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00950000182979.a.b.a ##32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Theria	ANCESTRAL SPECIES	2	ENSGT00940000163233 #7	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840 #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347 #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37	ENSGT00940000161730
Eutheria	ANCESTRAL SPECIES	1	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.z ##11	ENSGT00550000074840.y.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00940000163470 #28	ENSGT00390000001347 #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Boreoeutheria	ANCESTRAL SPECIES	6	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00940000163470 #28	ENSGT00390000001347 #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Euarchontoglires	ANCESTRAL SPECIES	6	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000163470 #28	ENSGT00940000153657.A #27	ENSGT00390000001347 #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Primates	ANCESTRAL SPECIES	6	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00940000163470 #28	ENSGT00390000001347 #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Strepsirrhini	ANCESTRAL SPECIES	3	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00940000163470 #28	ENSGT00390000001347 #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Lemuriformes	ANCESTRAL SPECIES	1	ENSGT00940000163233 #7	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00940000163470 #28	ENSGT00390000001347 #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Lemuriformes_a	ANCESTRAL SPECIES	38	ENSGT00940000163233 #7	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00940000163470 #28	ENSGT00390000001347 #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Greater bamboo lemur	MODERN SPECIES	231	SHISA8 (ENSPSMG00000000361) #7	SREBF2 (ENSPSMG00000000460) #8	CCDC134 (ENSPSMG00000000532) #9	MEI1 (ENSPSMG00000000596) #10	SNU13 (ENSPSMG00000000630) #11	XRCC6 (ENSPSMG00000000818) #12	DESI1 (ENSPSMG00000001171) #13	PMM1 (ENSPSMG00000001200) #14	CSDC2 (ENSPSMG00000001223) #15	POLR3H (ENSPSMG00000001287) #16	ACO2 (ENSPSMG00000001419) #17	PHF5A (ENSPSMG00000001452) #18	TOB2 (ENSPSMG00000001464) #19	TEF (ENSPSMG00000001506) #20	ZC3H7B (ENSPSMG00000001526) #21	RANGAP1 (ENSPSMG00000001639) #22	CHADL (ENSPSMG00000001766) #23	L3MBTL2 (ENSPSMG00000001837) #24	EP300 (ENSPSMG00000001992) #25	RBX1 (ENSPSMG00000002112) #26	XPNPEP3 (ENSPSMG00000002127) #27	DNAJB7 (ENSPSMG00000002153) #28	ST13 (ENSPSMG00000002173) #29	SLC25A17 (ENSPSMG00000002228) #30	MCHR1 (ENSPSMG00000002312) #31	MRTFA (ENSPSMG00000002488) #32	SGSM3 (ENSPSMG00000002912) #33	ADSL (ENSPSMG00000003312) #34	TNRC6B (ENSPSMG00000003634) #35	FAM83F (ENSPSMG00000003697) #36	GRAP2 (ENSPSMG00000003705) #37
Coquerels sifaka	MODERN SPECIES	131	TNFRSF13C (ENSPCOG00000025422)	SHISA8 (ENSPCOG00000026922) #7	SREBF2 (ENSPCOG00000023461) #8	CCDC134 (ENSPCOG00000025774) #9	MEI1 (ENSPCOG00000015175) #10	ENSPCOG00000025033 #11	XRCC6 (ENSPCOG00000027338) #12	DESI1 (ENSPCOG00000026824) #13	ENSPCOG00000020073 #14	CSDC2 (ENSPCOG00000024484) #15	POLR3H (ENSPCOG00000013751) #16	ACO2 (ENSPCOG00000017488) #17	PHF5A (ENSPCOG00000014332) #18	TEF (ENSPCOG00000013129) #20	ZC3H7B (ENSPCOG00000024031) #21	RANGAP1 (ENSPCOG00000028740) #22	CHADL (ENSPCOG00000028654) #23	L3MBTL2 (ENSPCOG00000024552) #24	EP300 (ENSPCOG00000021644) #25	RBX1 (ENSPCOG00000016863) #26	ENSPCOG00000024901 #27	ENSPCOG00000024193	SLC25A17 (ENSPCOG00000024201) #30	MCHR1 (ENSPCOG00000008960) #31	MRTFA (ENSPCOG00000018452) #32	SGSM3 (ENSPCOG00000014433) #33	ADSL (ENSPCOG00000014684) #34	TNRC6B (ENSPCOG00000020790) #35	FAM83F (ENSPCOG00000016351) #36	GRAP2 (ENSPCOG00000027684) #37	ENTHD1 (ENSPCOG00000024799)
Mouse lemur	MODERN SPECIES	29	ENSMICG00000030643	MEI1 (ENSMICG00000000892) #10	ENSMICG00000045689	SNU13 (ENSMICG00000013557) #11	ENSMICG00000007014	XRCC6 (ENSMICG00000005993) #12	DESI1 (ENSMICG00000045578) #13	PMM1 (ENSMICG00000005983) #14	CSDC2 (ENSMICG00000041795) #15	POLR3H (ENSMICG00000013546) #16	ACO2 (ENSMICG00000013529) #17	PHF5A (ENSMICG00000013520) #18	TOB2 (ENSMICG00000044468) #19	ENSMICG00000045077 #20	ZC3H7B (ENSMICG00000013471) #21	RANGAP1 (ENSMICG00000013450) #22	CHADL (ENSMICG00000037353) #23	L3MBTL2 (ENSMICG00000002619) #24	EP300 (ENSMICG00000013864) #25	RBX1 (ENSMICG00000034593) #26	ENSMICG00000041690	XPNPEP3 (ENSMICG00000008881) #27	ENSMICG00000042936 #29	SLC25A17 (ENSMICG00000008868) #30	MCHR1 (ENSMICG00000008864) #31	MRTFA (ENSMICG00000005671) #32	SGSM3 (ENSMICG00000005645) #33	ADSL (ENSMICG00000014085) #34	TNRC6B (ENSMICG00000014056) #35	FAM83F (ENSMICG00000016129) #36	GRAP2 (ENSMICG00000016121) #37
Bushbaby	MODERN SPECIES	122	SREBF2 (ENSOGAG00000014736) #8	CCDC134 (ENSOGAG00000011990) #9	MEI1 (ENSOGAG00000011980) #10	ENSOGAG00000026014	SNU13 (ENSOGAG00000004007) #11	XRCC6 (ENSOGAG00000008821) #12	DESI1 (ENSOGAG00000002854) #13	PMM1 (ENSOGAG00000027466) #14	CSDC2 (ENSOGAG00000002852) #15	ENSOGAG00000002850 #16	ACO2 (ENSOGAG00000002845) #17	ENSOGAG00000002839 #18	TOB2 (ENSOGAG00000008831) #19	TEF (ENSOGAG00000025997) #20	ZC3H7B (ENSOGAG00000008827) #21	RANGAP1 (ENSOGAG00000008823) #22	CHADL (ENSOGAG00000028902) #23	L3MBTL2 (ENSOGAG00000000428) #24	EP300 (ENSOGAG00000000423) #25	RBX1 (ENSOGAG00000016937) #26	XPNPEP3 (ENSOGAG00000030566) #27	DNAJB7 (ENSOGAG00000016936) #28	ENSOGAG00000016932 #29	SLC25A17 (ENSOGAG00000016929) #30	MCHR1 (ENSOGAG00000016927) #31	MRTFA (ENSOGAG00000003217) #32	SGSM3 (ENSOGAG00000000967) #33	ADSL (ENSOGAG00000015435) #34	TNRC6B (ENSOGAG00000011096) #35	FAM83F (ENSOGAG00000030522) #36	GRAP2 (ENSOGAG00000002666) #37
Haplorrhini	ANCESTRAL SPECIES	3	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000163470 #28	ENSGT00940000153657.A #27	ENSGT00390000001347 #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Simiiformes	ANCESTRAL SPECIES	27	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B.j.b #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000163470 #28	ENSGT00940000153657.A #27	ENSGT00390000001347.vb.a.a #29	ENSGT00390000001347.vb.a.b.a #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36
Catarrhini	ANCESTRAL SPECIES	22	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B.j.b #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892.f #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000163470 #28	ENSGT00940000153657.A #27	ENSGT00390000001347.vb.a.a #29	ENSGT00390000001347.vb.a.b.a #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36
Hominoidea	ANCESTRAL SPECIES	22	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B.j.b #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892.f #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000163470 #28	ENSGT00940000153657.A #27	ENSGT00390000001347.vb.a.b.a.d #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Hominidae	ANCESTRAL SPECIES	21	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B.j.b #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892.f #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000163470 #28	ENSGT00940000153657.A #27	ENSGT00390000001347.vb.a.b.a.d #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	21	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B.j.b #12	ENSGT00730000111100.g #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892.f #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000163470 #28	ENSGT00940000153657.A #27	ENSGT00390000001347.vb.a.b.a.d #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00950000182878.b.a.d.b.f.a	ENSGT00940000160998 #36
Homo/Pan group	ANCESTRAL SPECIES	20	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B.j.b #12	ENSGT00730000111100.g #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892.f #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000163470 #28	ENSGT00940000153657.A #27	ENSGT00390000001347.vb.a.b.a.d #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00950000182878.b.a.d.b.f.a	ENSGT00940000160998 #36
Pan	ANCESTRAL SPECIES	23	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B.j.b #12	ENSGT00730000111100.g #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892.f #17	ENSGT00390000018518 #18	ENSGT00910000148068	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000163470 #28	ENSGT00940000153657.A #27	ENSGT00910000146844.a.a	ENSGT00390000001347.vb.a.b.a.d #29	ENSGT00390000015537.ab	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35
Chimpanzee	MODERN SPECIES	13	SREBF2 (ENSPTRG00000014439) #8	CCDC134 (ENSPTRG00000014438) #9	MEI1 (ENSPTRG00000014436) #10	ENSPTRG00000041505	SNU13 (ENSPTRG00000014435) #11	XRCC6 (ENSPTRG00000022548) #12	DESI1 (ENSPTRG00000014433) #13	PMM1 (ENSPTRG00000014432) #14	CSDC2 (ENSPTRG00000044110) #15	POLR3H (ENSPTRG00000051865) #16	ACO2 (ENSPTRG00000014428) #17	PHF5A (ENSPTRG00000014427) #18	ENSPTRG00000043552	TEF (ENSPTRG00000014425) #20	ZC3H7B (ENSPTRG00000014424) #21	RANGAP1 (ENSPTRG00000023600) #22	CHADL (ENSPTRG00000014420) #23	L3MBTL2 (ENSPTRG00000014419) #24	EP300 (ENSPTRG00000014418) #25	ENSPTRG00000041697	RBX1 (ENSPTRG00000014417) #26	DNAJB7 (ENSPTRG00000014416) #28	XPNPEP3 (ENSPTRG00000014415) #27	ENSPTRG00000047105	ST13 (ENSPTRG00000044653) #29	ENSPTRG00000049457	SLC25A17 (ENSPTRG00000014412) #30	MCHR1 (ENSPTRG00000014411) #31	MRTFA (ENSPTRG00000014409) #32	SGSM3 (ENSPTRG00000014408) #33	ADSL (ENSPTRG00000014407) #34
Bonobo	MODERN SPECIES	13	SREBF2 (ENSPPAG00000032656) #8	CCDC134 (ENSPPAG00000031113) #9	MEI1 (ENSPPAG00000029081) #10	ENSPPAG00000028172	SNU13 (ENSPPAG00000026299) #11	XRCC6 (ENSPPAG00000037167) #12	DESI1 (ENSPPAG00000035138) #13	PMM1 (ENSPPAG00000034355) #14	CSDC2 (ENSPPAG00000032112) #15	POLR3H (ENSPPAG00000031000) #16	ACO2 (ENSPPAG00000019653) #17	PHF5A (ENSPPAG00000008422) #18	ENSPPAG00000032847	TEF (ENSPPAG00000035585) #20	ZC3H7B (ENSPPAG00000034228) #21	RANGAP1 (ENSPPAG00000037749) #22	ENSPPAG00000040223 #23	L3MBTL2 (ENSPPAG00000040643) #24	EP300 (ENSPPAG00000032679) #25	ENSPPAG00000035289	RBX1 (ENSPPAG00000031663) #26	DNAJB7 (ENSPPAG00000025760) #28	XPNPEP3 (ENSPPAG00000037292) #27	ENSPPAG00000034722	ST13 (ENSPPAG00000003665) #29	ENSPPAG00000036400	SLC25A17 (ENSPPAG00000038151) #30	MCHR1 (ENSPPAG00000030244) #31	MRTFA (ENSPPAG00000020762) #32	SGSM3 (ENSPPAG00000031514) #33	ADSL (ENSPPAG00000029448) #34
Human	MODERN SPECIES	14	SHISA8 (ENSG00000234965) #7	SREBF2 (ENSG00000198911) #8	CCDC134 (ENSG00000100147) #9	MEI1 (ENSG00000167077) #10	SNU13 (ENSG00000100138) #11	XRCC6 (ENSG00000196419) #12	DESI1 (ENSG00000100418) #13	PMM1 (ENSG00000100417) #14	CSDC2 (ENSG00000172346) #15	POLR3H (ENSG00000100413) #16	PHF5A (ENSG00000100410) #18	ACO2 (ENSG00000100412) #17	TOB2 (ENSG00000183864) #19	TEF (ENSG00000167074) #20	ZC3H7B (ENSG00000100403) #21	RANGAP1 (ENSG00000100401) #22	CHADL (ENSG00000100399) #23	L3MBTL2 (ENSG00000100395) #24	EP300 (ENSG00000100393) #25	RBX1 (ENSG00000100387) #26	DNAJB7 (ENSG00000172404) #28	XPNPEP3 (ENSG00000196236) #27	ST13 (ENSG00000100380) #29	SLC25A17 (ENSG00000100372) #30	MCHR1 (ENSG00000128285) #31	MRTFA (ENSG00000196588) #32	SGSM3 (ENSG00000100359) #33	ADSL (ENSG00000239900) #34	TNRC6B (ENSG00000100354) #35	FAM83F (ENSG00000133477) #36	TMA7B (ENSG00000225528)
Gorilla	MODERN SPECIES	13	TNFRSF13C (ENSGGOG00000012089)	ENSGGOG00000036616 #7	SREBF2 (ENSGGOG00000012065) #8	CCDC134 (ENSGGOG00000012055) #9	MEI1 (ENSGGOG00000004400) #10	SNU13 (ENSGGOG00000015898) #11	XRCC6 (ENSGGOG00000015885) #12	DESI1 (ENSGGOG00000015877) #13	PMM1 (ENSGGOG00000025969) #14	CSDC2 (ENSGGOG00000037916) #15	POLR3H (ENSGGOG00000038191) #16	ACO2 (ENSGGOG00000001107) #17	PHF5A (ENSGGOG00000001104) #18	TEF (ENSGGOG00000043695) #20	ZC3H7B (ENSGGOG00000014138) #21	RANGAP1 (ENSGGOG00000013473) #22	CHADL (ENSGGOG00000013462) #23	L3MBTL2 (ENSGGOG00000013451) #24	EP300 (ENSGGOG00000008201) #25	ENSGGOG00000025031	ENSGGOG00000003524 #26	DNAJB7 (ENSGGOG00000003936) #28	ENSGGOG00000042004	ST13 (ENSGGOG00000026747) #29	ENSGGOG00000043660	ENSGGOG00000023835	SLC25A17 (ENSGGOG00000022781) #30	MRTFA (ENSGGOG00000015180) #32	SGSM3 (ENSGGOG00000015169) #33	ENSGGOG00000015110 #34	TNRC6B (ENSGGOG00000008444) #35
Orangutan	MODERN SPECIES	13	SREBF2 (ENSPPYG00000011880) #8	CCDC134 (ENSPPYG00000011879) #9	MEI1 (ENSPPYG00000011878) #10	ENSPPYG00000031869	ENSPPYG00000033524	ENSPPYG00000033456 #11	XRCC6 (ENSPPYG00000011876) #12	ENSPPYG00000011875 #14	CSDC2 (ENSPPYG00000036694) #15	ENSPPYG00000011872 #16	ACO2 (ENSPPYG00000011871) #17	ENSPPYG00000011870 #18	TOB2 (ENSPPYG00000011869) #19	TEF (ENSPPYG00000011867) #20	ZC3H7B (ENSPPYG00000011866) #21	RANGAP1 (ENSPPYG00000011865) #22	ENSPPYG00000040861	CHADL (ENSPPYG00000011864) #23	L3MBTL2 (ENSPPYG00000011863) #24	EP300 (ENSPPYG00000011862) #25	RBX1 (ENSPPYG00000011861) #26	XPNPEP3 (ENSPPYG00000011859) #27	ST13 (ENSPPYG00000011858) #29	SLC25A17 (ENSPPYG00000011856) #30	MCHR1 (ENSPPYG00000031606) #31	ENSPPYG00000035357	MRTFA (ENSPPYG00000011852) #32	SGSM3 (ENSPPYG00000011851) #33	TNRC6B (ENSPPYG00000011849) #35	FAM83F (ENSPPYG00000011847) #36	GRAP2 (ENSPPYG00000011846) #37
Gibbon	MODERN SPECIES	22	ENSNLEG00000027977 #7	SREBF2 (ENSNLEG00000015650) #8	CCDC134 (ENSNLEG00000015642) #9	MEI1 (ENSNLEG00000015634) #10	ENSNLEG00000030585	SNU13 (ENSNLEG00000027284) #11	XRCC6 (ENSNLEG00000015610) #12	DESI1 (ENSNLEG00000015592) #13	PMM1 (ENSNLEG00000015555) #14	ENSNLEG00000015551 #15	POLR3H (ENSNLEG00000015536) #16	ACO2 (ENSNLEG00000015482) #17	ENSNLEG00000015481 #18	TEF (ENSNLEG00000015473) #20	ZC3H7B (ENSNLEG00000015470) #21	RANGAP1 (ENSNLEG00000015464) #22	CHADL (ENSNLEG00000015463) #23	L3MBTL2 (ENSNLEG00000015454) #24	EP300 (ENSNLEG00000015440) #25	RBX1 (ENSNLEG00000028919) #26	XPNPEP3 (ENSNLEG00000029969) #27	DNAJB7 (ENSNLEG00000015434) #28	ST13 (ENSNLEG00000015378) #29	SLC25A17 (ENSNLEG00000034097) #30	ENSNLEG00000015367 #31	MRTFA (ENSNLEG00000015359) #32	SGSM3 (ENSNLEG00000034921) #33	ADSL (ENSNLEG00000015322) #34	TNRC6B (ENSNLEG00000015311) #35	FAM83F (ENSNLEG00000015307) #36	GRAP2 (ENSNLEG00000015291) #37
Cercopithecidae	ANCESTRAL SPECIES	24	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B.j.b #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892.f #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.vb.a.a.a #29	ENSGT00910000146844	ENSGT00390000015537.ab	ENSGT00940000163470 #28	ENSGT00390000001347.vb.a.a.b #29	ENSGT00920000149129.e #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34
Cercopithecinae	ANCESTRAL SPECIES	21	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B.j.b #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892.f #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000154846.b.k.a.a	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.vb.a.a.a #29	ENSGT00910000146844	ENSGT00390000015537.ab	ENSGT00940000163470 #28	ENSGT00390000001347.vb.a.a.b #29	ENSGT00920000149129.e #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33
Vervet Monkey	MODERN SPECIES	10	SREBF2 (ENSCSAG00000005734) #8	CCDC134 (ENSCSAG00000005737) #9	MEI1 (ENSCSAG00000005763) #10	ENSCSAG00000005774	SNU13 (ENSCSAG00000005776) #11	XRCC6 (ENSCSAG00000005784) #12	DESI1 (ENSCSAG00000005787) #13	PMM1 (ENSCSAG00000005792) #14	CSDC2 (ENSCSAG00000005794) #15	POLR3H (ENSCSAG00000005798) #16	ACO2 (ENSCSAG00000005807) #17	PHF5A (ENSCSAG00000005811) #18	TOB2 (ENSCSAG00000019283) #19	TEF (ENSCSAG00000005816) #20	ZC3H7B (ENSCSAG00000005824) #21	RANGAP1 (ENSCSAG00000005830) #22	CHADL (ENSCSAG00000005836) #23	L3MBTL2 (ENSCSAG00000005839) #24	ENSCSAG00000019282	EP300 (ENSCSAG00000005846) #25	RBX1 (ENSCSAG00000005849) #26	XPNPEP3 (ENSCSAG00000005861) #27	ENSCSAG00000019281	ENSCSAG00000005882 #29	SLC25A17 (ENSCSAG00000005926) #30	MCHR1 (ENSCSAG00000005961) #31	MRTFA (ENSCSAG00000005969) #32	SGSM3 (ENSCSAG00000005995) #33	ADSL (ENSCSAG00000006001) #34	TNRC6B (ENSCSAG00000006021) #35	FAM83F (ENSCSAG00000006058) #36
Cercopithecinae_a	ANCESTRAL SPECIES	20	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B.j.b #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892.f #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618.cb.b #26	ENSGT00940000155618.cb.a.a #26	ENSGT00940000153657.A #27	ENSGT00390000001347.vb.a.a.a #29	ENSGT00910000146844	ENSGT00390000015537.ab	ENSGT00940000163470 #28	ENSGT00390000001347.vb.a.a.b #29	ENSGT00920000149129.e #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33
Macaca	ANCESTRAL SPECIES	20	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B.j.b #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892.f #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618.cb.a.a #26	ENSGT00940000153657.A #27	ENSGT00390000001347.vb.a.a.b #29	ENSGT00940000163470 #28	ENSGT00390000001347.vb.a.b.a.a #29	ENSGT00920000149129.e #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36
Pig-tailed macaque	MODERN SPECIES	329	MEI1 (ENSMNEG00000032013) #10	ENSMNEG00000045462	ENSMNEG00000033195 ##11	XRCC6 (ENSMNEG00000035076) #12	DESI1 (ENSMNEG00000030194) #13	PMM1 (ENSMNEG00000021815) #14	CSDC2 (ENSMNEG00000027703) #15	POLR3H (ENSMNEG00000022264) #16	ACO2 (ENSMNEG00000044522) #17	PHF5A (ENSMNEG00000045104) #18	TOB2 (ENSMNEG00000020529) #19	ENSMNEG00000010834	ENSMNEG00000006468	TEF (ENSMNEG00000020616) #20	ZC3H7B (ENSMNEG00000036730) #21	RANGAP1 (ENSMNEG00000036291) #22	CHADL (ENSMNEG00000036193) #23	L3MBTL2 (ENSMNEG00000044141) #24	EP300 (ENSMNEG00000043056) #25	ENSMNEG00000038287 #26	XPNPEP3 (ENSMNEG00000028410) #27	ENSMNEG00000031373 #29	ENSMNEG00000013783	ENSMNEG00000033494	SLC25A17 (ENSMNEG00000038810) #30	MCHR1 (ENSMNEG00000030314) #31	MRTFA (ENSMNEG00000031219) #32	SGSM3 (ENSMNEG00000031385) #33	ADSL (ENSMNEG00000036502) #34	TNRC6B (ENSMNEG00000042745) #35	FAM83F (ENSMNEG00000033076) #36
Macaca_a	ANCESTRAL SPECIES	20	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B.j.b #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892.f #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000154846.b.k.a.a	ENSGT00940000155618.cb.a.a #26	ENSGT00940000153657.A #27	ENSGT00940000163470 #28	ENSGT00390000001347.vb.a.b.a.a #29	ENSGT00920000149129.e #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36
Rhesus	MODERN SPECIES	1	SREBF2 (ENSMMUG00000003357) #8	CCDC134 (ENSMMUG00000011531) #9	MEI1 (ENSMMUG00000031012) #10	ENSMMUG00000007290	SNU13 (ENSMMUG00000042546) #11	XRCC6 (ENSMMUG00000001856) #12	DESI1 (ENSMMUG00000050219) #13	PMM1 (ENSMMUG00000001853) #14	CSDC2 (ENSMMUG00000062477) #15	ACO2 (ENSMMUG00000001454) #17	POLR3H (ENSMMUG00000001459) #16	PHF5A (ENSMMUG00000065330) #18	TOB2 (ENSMMUG00000002554) #19	TEF (ENSMMUG00000005221) #20	ZC3H7B (ENSMMUG00000005219) #21	RANGAP1 (ENSMMUG00000014166) #22	CHADL (ENSMMUG00000014165) #23	L3MBTL2 (ENSMMUG00000014164) #24	EP300 (ENSMMUG00000000893) #25	ENSMMUG00000040029	ENSMMUG00000058288	RBX1 (ENSMMUG00000047625) #26	XPNPEP3 (ENSMMUG00000004067) #27	DNAJB7 (ENSMMUG00000065211) #28	ST13 (ENSMMUG00000019118) #29	SLC25A17 (ENSMMUG00000008106) #30	MCHR1 (ENSMMUG00000017371) #31	MRTFA (ENSMMUG00000020411) #32	ENSMMUG00000050905	SGSM3 (ENSMMUG00000008135) #33	ADSL (ENSMMUG00000005341) #34
Crab-eating macaque	MODERN SPECIES	1	MEI1 (ENSMFAG00000035767) #10	SNU13 (ENSMFAG00000031096) #11	XRCC6 (ENSMFAG00000003352) #12	ENSMFAG00000056431	ENSMFAG00000034617	ENSMFAG00000007408	PMM1 (ENSMFAG00000034090) #14	CSDC2 (ENSMFAG00000060068) #15	ACO2 (ENSMFAG00000043571) #17	POLR3H (ENSMFAG00000001153) #16	ENSMFAG00000047419	PHF5A (ENSMFAG00000003129) #18	TOB2 (ENSMFAG00000019801) #19	TEF (ENSMFAG00000033476) #20	ZC3H7B (ENSMFAG00000037965) #21	RANGAP1 (ENSMFAG00000040386) #22	L3MBTL2 (ENSMFAG00000037650) #24	EP300 (ENSMFAG00000039593) #25	ENSMFAG00000059794	ENSMFAG00000040152 #26	XPNPEP3 (ENSMFAG00000040751) #27	DNAJB7 (ENSMFAG00000051541) #28	ST13 (ENSMFAG00000035459) #29	SLC25A17 (ENSMFAG00000042964) #30	MCHR1 (ENSMFAG00000045345) #31	MRTFA (ENSMFAG00000046410) #32	SGSM3 (ENSMFAG00000032498) #33	ADSL (ENSMFAG00000039307) #34	TNRC6B (ENSMFAG00000003862) #35	ENSMFAG00000049257	ENSMFAG00000048080
Cercopithecinae_b	ANCESTRAL SPECIES	22	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B.j.b #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892.f #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00510000046986.n.b	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618.cb.b #26	ENSGT00940000153657.A #27	ENSGT00390000001347.vb.a.a.a #29	ENSGT00910000146844	ENSGT00390000015537.ab	ENSGT00940000163470 #28	ENSGT00390000001347.vb.a.a.b #29	ENSGT00920000149129.e #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34
Olive baboon	MODERN SPECIES	7	SREBF2 (ENSPANG00000008691) #8	CCDC134 (ENSPANG00000013694) #9	MEI1 (ENSPANG00000005138) #10	ENSPANG00000045378	SNU13 (ENSPANG00000038561) #11	XRCC6 (ENSPANG00000001252) #12	DESI1 (ENSPANG00000045717) #13	PMM1 (ENSPANG00000048796) #14	ACO2 (ENSPANG00000024107) #17	ENSPANG00000015758 #16	PHF5A (ENSPANG00000011337) #18	TOB2 (ENSPANG00000009655) #19	ENSPANG00000047887	TEF (ENSPANG00000037689) #20	ZC3H7B (ENSPANG00000019690) #21	RANGAP1 (ENSPANG00000019687) #22	CHADL (ENSPANG00000001306) #23	L3MBTL2 (ENSPANG00000001305) #24	EP300 (ENSPANG00000015108) #25	ENSPANG00000038187	RBX1 (ENSPANG00000046052) #26	XPNPEP3 (ENSPANG00000007027) #27	DNAJB7 (ENSPANG00000050760) #28	ENSPANG00000015759 #29	ENSPANG00000008275 #30	MCHR1 (ENSPANG00000051238) #31	MRTFA (ENSPANG00000024733) #32	SGSM3 (ENSPANG00000009270) #33	TNRC6B (ENSPANG00000009271) #35	FAM83F (ENSPANG00000016392) #36	GRAP2 (ENSPANG00000020770) #37
Cercopithecinae_d	ANCESTRAL SPECIES	17	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B.j.b #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892.f #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00510000046986.n.b	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618.cb.b #26	ENSGT00940000153657.A #27	ENSGT00390000001347.vb.a.a.a #29	ENSGT00910000146844	ENSGT00390000015537.ab	ENSGT00920000149129.e #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36
Drill	MODERN SPECIES	751	SREBF2 (ENSMLEG00000044114) #8	CCDC134 (ENSMLEG00000029232) #9	MEI1 (ENSMLEG00000033254) #10	SNU13 (ENSMLEG00000042136) #11	XRCC6 (ENSMLEG00000019869) #12	DESI1 (ENSMLEG00000043217) #13	PMM1 (ENSMLEG00000030064) #14	CSDC2 (ENSMLEG00000034612) #15	POLR3H (ENSMLEG00000024568) #16	ACO2 (ENSMLEG00000031603) #17	PHF5A (ENSMLEG00000037662) #18	TOB2 (ENSMLEG00000011426) #19	ENSMLEG00000004379	TEF (ENSMLEG00000033784) #20	ZC3H7B (ENSMLEG00000037209) #21	RANGAP1 (ENSMLEG00000030778) #22	CHADL (ENSMLEG00000037296) #23	L3MBTL2 (ENSMLEG00000021840) #24	EP300 (ENSMLEG00000039670) #25	ENSMLEG00000044153 #26	XPNPEP3 (ENSMLEG00000014699) #27	ENSMLEG00000030298 #29	ENSMLEG00000022771	ENSMLEG00000023192 #30	ENSMLEG00000036117	MCHR1 (ENSMLEG00000028467) #31	MRTFA (ENSMLEG00000036191) #32	SGSM3 (ENSMLEG00000039368) #33	ADSL (ENSMLEG00000039322) #34	TNRC6B (ENSMLEG00000041780) #35	FAM83F (ENSMLEG00000034781) #36
Sooty mangabey	MODERN SPECIES	103	SREBF2 (ENSCATG00000036837) #8	CCDC134 (ENSCATG00000040974) #9	MEI1 (ENSCATG00000039577) #10	SNU13 (ENSCATG00000038628) #11	XRCC6 (ENSCATG00000042366) #12	DESI1 (ENSCATG00000000926) #13	PMM1 (ENSCATG00000041928) #14	CSDC2 (ENSCATG00000035356) #15	POLR3H (ENSCATG00000018316) #16	ACO2 (ENSCATG00000030437) #17	PHF5A (ENSCATG00000012251) #18	TOB2 (ENSCATG00000021391) #19	ENSCATG00000022368	TEF (ENSCATG00000034168) #20	ZC3H7B (ENSCATG00000037774) #21	RANGAP1 (ENSCATG00000001985) #22	CHADL (ENSCATG00000040617) #23	L3MBTL2 (ENSCATG00000037314) #24	EP300 (ENSCATG00000043641) #25	ENSCATG00000044606	ENSCATG00000033630	RBX1 (ENSCATG00000036288) #26	XPNPEP3 (ENSCATG00000035961) #27	ENSCATG00000041540 #29	ENSCATG00000013183	ENSCATG00000043953 #30	MCHR1 (ENSCATG00000025929) #31	MRTFA (ENSCATG00000044298) #32	SGSM3 (ENSCATG00000037436) #33	ADSL (ENSCATG00000039632) #34	TNRC6B (ENSCATG00000029291) #35
Rhinopithecus	ANCESTRAL SPECIES	3	ENSGT00940000154485.A	ENSGT00940000163233 #7	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B.j.b.f #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892.f #17	ENSGT00390000018518 #18	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000154846.b.k.a.c	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.vb.a.a.a #29	ENSGT00910000146844	ENSGT00920000149129.e #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36
Black snub-nosed monkey	MODERN SPECIES	311							ENSRBIG00000039794 #12	DESI1 (ENSRBIG00000035678) #13	PMM1 (ENSRBIG00000033292) #14	CSDC2 (ENSRBIG00000039404) #15	POLR3H (ENSRBIG00000040089) #16	ACO2 (ENSRBIG00000035174) #17	ENSRBIG00000030586 #18	TEF (ENSRBIG00000037619) #20	ZC3H7B (ENSRBIG00000013333) #21	RANGAP1 (ENSRBIG00000040255) #22	CHADL (ENSRBIG00000044046) #23	L3MBTL2 (ENSRBIG00000029454) #24	ENSRBIG00000032400	EP300 (ENSRBIG00000040546) #25	RBX1 (ENSRBIG00000043855) #26	XPNPEP3 (ENSRBIG00000043347) #27	ENSRBIG00000042698	ENSRBIG00000037095 #29	ENSRBIG00000040439 #30	MCHR1 (ENSRBIG00000038995) #31	MRTFA (ENSRBIG00000036684) #32	SGSM3 (ENSRBIG00000010806) #33	ADSL (ENSRBIG00000033554) #34
Golden snub-nosed monkey	MODERN SPECIES	575	TNFRSF13C (ENSRROG00000042222)	ENSRROG00000043046 #7	SREBF2 (ENSRROG00000032435) #8	CCDC134 (ENSRROG00000030513) #9	MEI1 (ENSRROG00000043986) #10	SNU13 (ENSRROG00000042542) #11	ENSRROG00000030297 #12	DESI1 (ENSRROG00000039283) #13	PMM1 (ENSRROG00000027395) #14	CSDC2 (ENSRROG00000042848) #15	POLR3H (ENSRROG00000033728) #16	ACO2 (ENSRROG00000005066) #17	PHF5A (ENSRROG00000038952) #18	TEF (ENSRROG00000045709) #20	ZC3H7B (ENSRROG00000033899) #21	RANGAP1 (ENSRROG00000045722) #22	CHADL (ENSRROG00000039682) #23	L3MBTL2 (ENSRROG00000036118) #24	EP300 (ENSRROG00000037756) #25	RBX1 (ENSRROG00000029154) #26	XPNPEP3 (ENSRROG00000044414) #27	ENSRROG00000033331 #29	ENSRROG00000030895	ENSRROG00000030379 #30	MCHR1 (ENSRROG00000031131) #31	MRTFA (ENSRROG00000042362) #32	SGSM3 (ENSRROG00000036226) #33	ADSL (ENSRROG00000029868) #34	TNRC6B (ENSRROG00000031135) #35	FAM83F (ENSRROG00000031286) #36	GRAP2 (ENSRROG00000044364) #37
Platyrrhini	DUPLICATION
Platyrrhini	ANCESTRAL SPECIES	30	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B.j.b #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518.x #18	ENSGT00940000154208.d #19	ENSGT00390000018518.w.a #18	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203.a #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618.ab #26	ENSGT00940000163470 #28	ENSGT00940000155618.`b #26	ENSGT00940000153657.A #27	ENSGT00390000001347.vb.b.b #29	ENSGT00920000149129.c #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36
Cebidae	ANCESTRAL SPECIES	31	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B.j.b #12	ENSGT00940000153239.B.j.a.a.b #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518.w.a #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203.a #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618.ab #26	ENSGT00940000163470 #28	ENSGT00940000155618.`b #26	ENSGT00940000153657.A #27	ENSGT00390000001347.vb.b.b #29	ENSGT00920000149129.c #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36
Cebidae_a	ANCESTRAL SPECIES	40	ENSGT00940000154485.A	ENSGT00940000163233 #7	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B.j.a.a.b #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518.w.a #18	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203.a #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618.ab #26	ENSGT00940000153657.A #27	ENSGT00390000001347.vb.b.b #29	ENSGT00920000149129.c #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37	ENSGT00940000161730
Capuchin	MODERN SPECIES	435	TNFRSF13C (ENSCCAG00000036813)	SHISA8 (ENSCCAG00000029382) #7	SREBF2 (ENSCCAG00000025566) #8	CCDC134 (ENSCCAG00000019608) #9	MEI1 (ENSCCAG00000033076) #10	ENSCCAG00000031213 #11	ENSCCAG00000030468 #12	DESI1 (ENSCCAG00000037020) #13	PMM1 (ENSCCAG00000034441) #14	CSDC2 (ENSCCAG00000029849) #15	POLR3H (ENSCCAG00000025802) #16	ACO2 (ENSCCAG00000028378) #17	ENSCCAG00000037141 #18	TEF (ENSCCAG00000033688) #20	ZC3H7B (ENSCCAG00000027974) #21	ENSCCAG00000024962 #22	CHADL (ENSCCAG00000031153) #23	L3MBTL2 (ENSCCAG00000001271) #24	ENSCCAG00000035552	EP300 (ENSCCAG00000036735) #25	RBX1 (ENSCCAG00000037465) #26	XPNPEP3 (ENSCCAG00000024069) #27	ENSCCAG00000027368
Bolivian squirrel monkey	MODERN SPECIES	94	SHISA8 (ENSSBOG00000031370) #7	SREBF2 (ENSSBOG00000032953) #8	CCDC134 (ENSSBOG00000030156) #9	MEI1 (ENSSBOG00000026823) #10	ENSSBOG00000024134 ##11	ENSSBOG00000024724 #12	DESI1 (ENSSBOG00000023969) #13	PMM1 (ENSSBOG00000035346) #14	CSDC2 (ENSSBOG00000035590) #15	POLR3H (ENSSBOG00000020652) #16	ENSSBOG00000029050 #17	ENSSBOG00000025096 #18	ENSSBOG00000015322	TEF (ENSSBOG00000024378) #20	ZC3H7B (ENSSBOG00000034962) #21	ENSSBOG00000022447 #22	CHADL (ENSSBOG00000032007) #23	L3MBTL2 (ENSSBOG00000028967) #24	EP300 (ENSSBOG00000027132) #25	RBX1 (ENSSBOG00000023412) #26	XPNPEP3 (ENSSBOG00000034216) #27	ENSSBOG00000029053 #29	SLC25A17 (ENSSBOG00000022585) #30	MCHR1 (ENSSBOG00000036058) #31	MRTFA (ENSSBOG00000019487) #32	SGSM3 (ENSSBOG00000027400) #33	ADSL (ENSSBOG00000030059) #34	TNRC6B (ENSSBOG00000029743) #35	FAM83F (ENSSBOG00000024462) #36	GRAP2 (ENSSBOG00000028271) #37	ENTHD1 (ENSSBOG00000028101)
Marmoset	MODERN SPECIES		IGLL1 (ENSCJAG00000081711)	ENSCJAG00000054495	ZNF70 (ENSCJAG00000038628)	VPREB3 (ENSCJAG00000010848)	C22orf15 (ENSCJAG00000010833)	CHCHD10 (ENSCJAG00000010824)	MMP11 (ENSCJAG00000010798)	SMARCB1 (ENSCJAG00000046335)	ENSCJAG00000010682	ENSCJAG00000075226	POLR3H (ENSCJAG00000005072) #16	PHF5A (ENSCJAG00000004999) #18	TOB2 (ENSCJAG00000038649) #19	TEF (ENSCJAG00000004977) #20	ZC3H7B (ENSCJAG00000004889) #21	RANGAP1 (ENSCJAG00000004844) #22	CHADL (ENSCJAG00000043984) #23	L3MBTL2 (ENSCJAG00000004817) #24	EP300 (ENSCJAG00000004770) #25	RBX1 (ENSCJAG00000004763) #26	DNAJB7 (ENSCJAG00000004759) #28	XPNPEP3 (ENSCJAG00000004718) #27	ENSCJAG00000004644 #29	SLC25A17 (ENSCJAG00000004636) #30	MCHR1 (ENSCJAG00000002884) #31	MRTFA (ENSCJAG00000002850) #32	SGSM3 (ENSCJAG00000002827) #33	ADSL (ENSCJAG00000002764) #34	TNRC6B (ENSCJAG00000002732) #35	FAM83F (ENSCJAG00000002721) #36	GRAP2 (ENSCJAG00000056000) #37
Mas night monkey	MODERN SPECIES	1154	SHISA8 (ENSANAG00000030774) #7	SREBF2 (ENSANAG00000027763) #8	ENSANAG00000031745	CCDC134 (ENSANAG00000030858) #9	MEI1 (ENSANAG00000030252) #10	SNU13 (ENSANAG00000023772) #11	XRCC6 (ENSANAG00000018684) #12	DESI1 (ENSANAG00000033964) #13	PMM1 (ENSANAG00000027683) #14	CSDC2 (ENSANAG00000020803) #15	POLR3H (ENSANAG00000025122) #16	ACO2 (ENSANAG00000029281) #17	ENSANAG00000028988 #18	TEF (ENSANAG00000034941) #20	ZC3H7B (ENSANAG00000026268) #21	ENSANAG00000032854 #22	ENSANAG00000025645 #23	ENSANAG00000022120 #23	L3MBTL2 (ENSANAG00000029131) #24
Platyrrhini	ANCESTRAL SPECIES	158																ENSGT00440000039203.b #22	ENSGT00940000166597.a.a
Cebidae	ANCESTRAL SPECIES	152																ENSGT00440000039203.b #22	ENSGT00940000166597.a.a
Cebidae_a	ANCESTRAL SPECIES	227																ENSGT00440000039203.b #22	ENSGT00940000166597.a.a
Bolivian squirrel monkey	MODERN SPECIES	170	E2F5 (ENSSBOG00000015142)	ENSSBOG00000024568	CA13 (ENSSBOG00000028214)	CA1 (ENSSBOG00000017230)	CA3 (ENSSBOG00000032489)	CA2 (ENSSBOG00000012389)	PSKH2 (ENSSBOG00000023087)	ENSSBOG00000028330	WWP1 (ENSSBOG00000025212)	RMDN1 (ENSSBOG00000024093)	CPNE3 (ENSSBOG00000022300)	CNGB3 (ENSSBOG00000022200)	CNBD1 (ENSSBOG00000028244)	MMP16 (ENSSBOG00000030687)	ENSSBOG00000036402	ENSSBOG00000026435 #22	ENSSBOG00000033987	ENSSBOG00000020723	RIPK2 (ENSSBOG00000021999)	OSGIN2 (ENSSBOG00000019459)	NBN (ENSSBOG00000027709)	DECR1 (ENSSBOG00000027207)	CALB1 (ENSSBOG00000024298)	ENSSBOG00000003143	NECAB1 (ENSSBOG00000034437)	C8orf88 (ENSSBOG00000024334)	ENSSBOG00000022060	PIP4P2 (ENSSBOG00000025553)	OTUD6B (ENSSBOG00000025756)	ENSSBOG00000021380	SLC26A7 (ENSSBOG00000021533)
Capuchin	MODERN SPECIES	109																ENSCCAG00000021285 #22	RIPK2 (ENSCCAG00000030865)	ENSCCAG00000019049	OSGIN2 (ENSCCAG00000023678)	NBN (ENSCCAG00000033734)	ENSCCAG00000035563	DECR1 (ENSCCAG00000035367)	CALB1 (ENSCCAG00000021895)	TMEM64 (ENSCCAG00000038025)	ENSCCAG00000032801	NECAB1 (ENSCCAG00000037535)	C8orf88 (ENSCCAG00000033667)	PIP4P2 (ENSCCAG00000026867)	OTUD6B (ENSCCAG00000027195)	LRRC69 (ENSCCAG00000032597)	SLC26A7 (ENSCCAG00000017342)
Mas night monkey	MODERN SPECIES	859														CNBD1 (ENSANAG00000029938)	MMP16 (ENSANAG00000020334)	ENSANAG00000021486 #22	ENSANAG00000028276	RIPK2 (ENSANAG00000030548)	ENSANAG00000035907	NBN (ENSANAG00000036410)	DECR1 (ENSANAG00000028828)	CALB1 (ENSANAG00000035700)	TMEM64 (ENSANAG00000035025)	NECAB1 (ENSANAG00000033460)	C8orf88 (ENSANAG00000022380)	PIP4P2 (ENSANAG00000028364)	OTUD6B (ENSANAG00000025910)	SLC26A7 (ENSANAG00000032016)
Tarsier	MODERN SPECIES	5777																RANGAP1 (ENSTSYG00000035729) #22
Euarchontoglires_A	ANCESTRAL SPECIES	5	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840.y.b.a.a ##11	ENSGT00900000141218	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000163470 #28	ENSGT00940000153657.A #27	ENSGT00390000001347 #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Glires	ANCESTRAL SPECIES	4	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000163470 #28	ENSGT00940000153657.A #27	ENSGT00390000001347 #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Rodentia	ANCESTRAL SPECIES	5	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000163470 #28	ENSGT00940000153657.A #27	ENSGT00390000001347 #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Rodentia_B	ANCESTRAL SPECIES	3	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000163470 #28	ENSGT00940000153657.A #27	ENSGT00390000001347 #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Myomorpha	ANCESTRAL SPECIES	2	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000163470 #28	ENSGT00940000153657.A #27	ENSGT00390000001347 #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Muroidea	ANCESTRAL SPECIES	5	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000163470 #28	ENSGT00940000153657.A #27	ENSGT00390000001347 #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Muroidea_A	ANCESTRAL SPECIES	9	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000163470 #28	ENSGT00940000153657.A #27	ENSGT00390000001347 #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Cricetidae	ANCESTRAL SPECIES	10	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000163470 #28	ENSGT00940000153657.A #27	ENSGT00390000001347 #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Cricetinae	ANCESTRAL SPECIES	3	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000003022.t	ENSGT00940000153331.y.b.a.b	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000163470 #28	ENSGT00940000153657.A #27	ENSGT00390000001347 #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Chinese hamster chok1gshd	MODERN SPECIES	1	Mei1 (ENSCGRG00001018719) #10	4930407I10Rik (ENSCGRG00001020277)	ENSCGRG00001019169 #11	Xrcc6 (ENSCGRG00001019029) #12	Desi1 (ENSCGRG00001018751) #13	Ndufb11b (ENSCGRG00001009944)	ENSCGRG00001018874	Pmm1 (ENSCGRG00001021685) #14	Csdc2 (ENSCGRG00001021123) #15	Polr3h (ENSCGRG00001023556) #16	ENSCGRG00001023335 #17	Phf5a (ENSCGRG00001017936) #18	Tob2 (ENSCGRG00001010039) #19	Tef (ENSCGRG00001005588) #20	Zc3h7b (ENSCGRG00001022924) #21	Rangap1 (ENSCGRG00001017379) #22	Chadl (ENSCGRG00001017198) #23	L3mbtl2 (ENSCGRG00001021097) #24	Ep300 (ENSCGRG00001020720) #25	Rbx1 (ENSCGRG00001022113) #26	Dnajb7 (ENSCGRG00001010409) #28	Xpnpep3 (ENSCGRG00001020209) #27	ENSCGRG00001019004 #29	Slc25a17 (ENSCGRG00001017555) #30	Mchr1 (ENSCGRG00001017287) #31	Mrtfa (ENSCGRG00001018160) #32	Sgsm3 (ENSCGRG00001018846) #33	Adsl (ENSCGRG00001017906) #34	Tnrc6b (ENSCGRG00001020166) #35	Fam83f (ENSCGRG00001018899) #36	Grap2 (ENSCGRG00001021712) #37
Golden Hamster	MODERN SPECIES	626	Srebf2 (ENSMAUG00000014667) #8	Ccdc134 (ENSMAUG00000015349) #9	ENSMAUG00000018190 #10	4930407I10Rik (ENSMAUG00000020761)	Snu13 (ENSMAUG00000010871) #11	Xrcc6 (ENSMAUG00000017340) #12	Desi1 (ENSMAUG00000020204) #13	ENSMAUG00000012267	Csdc2 (ENSMAUG00000020821) #15	Polr3h (ENSMAUG00000022215) #16	Aco2 (ENSMAUG00000007598) #17	Phf5a (ENSMAUG00000017124) #18	Tob2 (ENSMAUG00000007650) #19	Tef (ENSMAUG00000011211) #20	Zc3h7b (ENSMAUG00000007915) #21	Rangap1 (ENSMAUG00000013685) #22	L3mbtl2 (ENSMAUG00000008519) #24	Ep300 (ENSMAUG00000004380) #25	ENSMAUG00000010852 #26	Dnajb7 (ENSMAUG00000010726) #28	ENSMAUG00000004356	Slc25a17 (ENSMAUG00000017231) #30	Mchr1 (ENSMAUG00000021927) #31	ENSMAUG00000012578 #32	ENSMAUG00000022256 #32	Sgsm3 (ENSMAUG00000008597) #33	Adsl (ENSMAUG00000001074) #34	Tnrc6b (ENSMAUG00000016123) #35	ENSMAUG00000014912	Fam83f (ENSMAUG00000015744) #36	Grap2 (ENSMAUG00000008300) #37
Cricetidae_B	ANCESTRAL SPECIES	6	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.a.h ##11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00940000163470 #28	ENSGT00390000001347 #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Northern American deer mouse	MODERN SPECIES	12	ENSPEMG00000018900 ##11	Xrcc6 (ENSPEMG00000023446) #12	Desi1 (ENSPEMG00000024515) #13	Ndufb11b (ENSPEMG00000027521)	ENSPEMG00000028310	ENSPEMG00000027260	ENSPEMG00000024816	Pmm1 (ENSPEMG00000015085) #14	Csdc2 (ENSPEMG00000026460) #15	ENSPEMG00000000726 #16	Aco2 (ENSPEMG00000021158) #17	ENSPEMG00000027549 #18	Tob2 (ENSPEMG00000028595) #19	Tef (ENSPEMG00000029238) #20	Zc3h7b (ENSPEMG00000023990) #21	Rangap1 (ENSPEMG00000013930) #22	Chadl (ENSPEMG00000015210) #23	L3mbtl2 (ENSPEMG00000011652) #24	Ep300 (ENSPEMG00000011981) #25	ENSPEMG00000029631	Rbx1 (ENSPEMG00000015808) #26	Dnajb7 (ENSPEMG00000027247) #28	Xpnpep3 (ENSPEMG00000008673) #27	St13 (ENSPEMG00000010026) #29	Slc25a17 (ENSPEMG00000015903) #30	Mchr1 (ENSPEMG00000027041) #31	Mrtfa (ENSPEMG00000003602) #32	Sgsm3 (ENSPEMG00000011819) #33	Adsl (ENSPEMG00000017163) #34	Tnrc6b (ENSPEMG00000011403) #35	Fam83f (ENSPEMG00000010602) #36
Prairie vole	MODERN SPECIES	2	Shisa8 (ENSMOCG00000005566) #7	Srebf2 (ENSMOCG00000019045) #8	Ccdc134 (ENSMOCG00000005926) #9	Mei1 (ENSMOCG00000009514) #10	4930407I10Rik (ENSMOCG00000013993)	Xrcc6 (ENSMOCG00000015717) #12	Desi1 (ENSMOCG00000010048) #13	Pmm1 (ENSMOCG00000012876) #14	Csdc2 (ENSMOCG00000017299) #15	Polr3h (ENSMOCG00000018747) #16	Aco2 (ENSMOCG00000008387) #17	Phf5a (ENSMOCG00000015149) #18	Tob2 (ENSMOCG00000021112) #19	Tef (ENSMOCG00000001800) #20	Zc3h7b (ENSMOCG00000014855) #21	Rangap1 (ENSMOCG00000015758) #22	Chadl (ENSMOCG00000011810) #23	L3mbtl2 (ENSMOCG00000019285) #24	Ly6g6g (ENSMOCG00000013524)	Ly6d (ENSMOCG00000015686)	Slurp2 (ENSMOCG00000005277)	Lypd2 (ENSMOCG00000018807)	Slurp1 (ENSMOCG00000019456)	Them6 (ENSMOCG00000022648)	Psca (ENSMOCG00000022772)	Jrk (ENSMOCG00000011136)	Arc (ENSMOCG00000014212)	Mroh4 (ENSMOCG00000000343)	Adgrb1 (ENSMOCG00000016067)	Gm6569 (ENSMOCG00000012239)	ENSMOCG00000008614
Murinae	ANCESTRAL SPECIES	10	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000003022.t	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000163470 #28	ENSGT00940000153657.A #27	ENSGT00390000001347 #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Mus	ANCESTRAL SPECIES	11	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000003022.t	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000163470 #28	ENSGT00940000153657.A #27	ENSGT00390000001347 #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Mus_A	ANCESTRAL SPECIES	13	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000003022.t	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000163470 #28	ENSGT00940000153657.A #27	ENSGT00390000001347 #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Mus_B	ANCESTRAL SPECIES	12	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000003022.t	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000163470 #28	ENSGT00940000153657.A #27	ENSGT00390000001347 #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Mouse	MODERN SPECIES	6	Ccdc134 (ENSMUSG00000068114) #9	Mei1 (ENSMUSG00000068117) #10	4930407I10Rik (ENSMUSG00000075524)	Snu13 (ENSMUSG00000063480) #11	Desi1 (ENSMUSG00000022472) #13	Xrcc6 (ENSMUSG00000022471) #12	Ndufb11b (ENSMUSG00000061633)	Pmm1 (ENSMUSG00000022474) #14	Csdc2 (ENSMUSG00000042109) #15	Polr3h (ENSMUSG00000022476) #16	Aco2 (ENSMUSG00000022477) #17	Phf5a (ENSMUSG00000061360) #18	Tob2 (ENSMUSG00000048546) #19	Tef (ENSMUSG00000022389) #20	Zc3h7b (ENSMUSG00000022390) #21	Rangap1 (ENSMUSG00000022391) #22	Chadl (ENSMUSG00000063765) #23	L3mbtl2 (ENSMUSG00000022394) #24	Ep300 (ENSMUSG00000055024) #25	Rbx1 (ENSMUSG00000022400) #26	Dnajb7 (ENSMUSG00000047108) #28	Xpnpep3 (ENSMUSG00000022401) #27	St13 (ENSMUSG00000022403) #29	Slc25a17 (ENSMUSG00000022404) #30	Mchr1 (ENSMUSG00000050164) #31	Mrtfa (ENSMUSG00000042292) #32	Sgsm3 (ENSMUSG00000042303) #33	Adsl (ENSMUSG00000022407) #34	Tnrc6b (ENSMUSG00000047888) #35	Fam83f (ENSMUSG00000022408) #36	Grap2 (ENSMUSG00000042351) #37
Mus_C	ANCESTRAL SPECIES	17	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00940000163470 #28	ENSGT00390000001347 #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Steppe mouse	MODERN SPECIES	3124																Rangap1 (ENSMSIG00000027600) #22	Chadl (ENSMSIG00000027651) #23	L3mbtl2 (ENSMSIG00000027660) #24	ENSMSIG00000027732 #25	Rbx1 (ENSMSIG00000028515) #26	Xpnpep3 (ENSMSIG00000028518) #27	Dnajb7 (ENSMSIG00000028531) #28	St13 (ENSMSIG00000028532) #29	Slc25a17 (ENSMSIG00000028556) #30	Mchr1 (ENSMSIG00000028591) #31	Mrtfa (ENSMSIG00000028601) #32	Sgsm3 (ENSMSIG00000028619) #33	Adsl (ENSMSIG00000028638) #34	Tnrc6b (ENSMSIG00000028673) #35	Fam83f (ENSMSIG00000028799) #36	Grap2 (ENSMSIG00000028802) #37
spretus	MODERN SPECIES	6	4930407I10Rik (MGP_SPRETEiJ_G0020970)	MGP_SPRETEiJ_G0020969	Desi1 (MGP_SPRETEiJ_G0020968) #13	Xrcc6 (MGP_SPRETEiJ_G0020967) #12	Pmm1 (MGP_SPRETEiJ_G0020966) #14	Csdc2 (MGP_SPRETEiJ_G0020965) #15	Polr3h (MGP_SPRETEiJ_G0020964) #16	Aco2 (MGP_SPRETEiJ_G0020963) #17	Phf5a (MGP_SPRETEiJ_G0020962) #18	Tob2 (MGP_SPRETEiJ_G0020961) #19	MGP_SPRETEiJ_G0020960	MGP_SPRETEiJ_G0020959	MGP_SPRETEiJ_G0020958	Tef (MGP_SPRETEiJ_G0020957) #20	Zc3h7b (MGP_SPRETEiJ_G0020956) #21	Rangap1 (MGP_SPRETEiJ_G0020955) #22	Chadl (MGP_SPRETEiJ_G0020954) #23	L3mbtl2 (MGP_SPRETEiJ_G0020953) #24	Ep300 (MGP_SPRETEiJ_G0020952) #25	Rbx1 (MGP_SPRETEiJ_G0020951) #26	Dnajb7 (MGP_SPRETEiJ_G0020950) #28	Xpnpep3 (MGP_SPRETEiJ_G0020949) #27	St13 (MGP_SPRETEiJ_G0020948) #29	Slc25a17 (MGP_SPRETEiJ_G0020947) #30	Mchr1 (MGP_SPRETEiJ_G0020946) #31	Mrtfa (MGP_SPRETEiJ_G0020945) #32	MGP_SPRETEiJ_G0020944 #33	MGP_SPRETEiJ_G0020943 #33	Adsl (MGP_SPRETEiJ_G0020942) #34	Tnrc6b (MGP_SPRETEiJ_G0020941) #35	Fam83f (MGP_SPRETEiJ_G0020940) #36
Ryukyu mouse	MODERN SPECIES	6	Ccdc134 (MGP_CAROLIEiJ_G0020072) #9	Mei1 (MGP_CAROLIEiJ_G0020071) #10	4930407I10Rik (MGP_CAROLIEiJ_G0020070)	Snu13 (MGP_CAROLIEiJ_G0020069) #11	Desi1 (MGP_CAROLIEiJ_G0020068) #13	Xrcc6 (MGP_CAROLIEiJ_G0020067) #12	Ndufb11b (MGP_CAROLIEiJ_G0020066)	Pmm1 (MGP_CAROLIEiJ_G0020065) #14	Csdc2 (MGP_CAROLIEiJ_G0020064) #15	Polr3h (MGP_CAROLIEiJ_G0020063) #16	Aco2 (MGP_CAROLIEiJ_G0020062) #17	Phf5a (MGP_CAROLIEiJ_G0020061) #18	Tob2 (MGP_CAROLIEiJ_G0020060) #19	Tef (MGP_CAROLIEiJ_G0020059) #20	Zc3h7b (MGP_CAROLIEiJ_G0020058) #21	Rangap1 (MGP_CAROLIEiJ_G0020057) #22	Chadl (MGP_CAROLIEiJ_G0020056) #23	L3mbtl2 (MGP_CAROLIEiJ_G0020055) #24	Ep300 (MGP_CAROLIEiJ_G0020054) #25	Rbx1 (MGP_CAROLIEiJ_G0020053) #26	Dnajb7 (MGP_CAROLIEiJ_G0020052) #28	MGP_CAROLIEiJ_G0020051 #27	St13 (MGP_CAROLIEiJ_G0020050) #29	Slc25a17 (MGP_CAROLIEiJ_G0020049) #30	Mchr1 (MGP_CAROLIEiJ_G0020048) #31	Mrtfa (MGP_CAROLIEiJ_G0020047) #32	MGP_CAROLIEiJ_G0020046 #33	MGP_CAROLIEiJ_G0020045 #33	Adsl (MGP_CAROLIEiJ_G0020044) #34	Tnrc6b (MGP_CAROLIEiJ_G0020043) #35	Fam83f (MGP_CAROLIEiJ_G0020042) #36
Shrew mouse	MODERN SPECIES	8	Ccdc134 (MGP_PahariEiJ_G0020074) #9	Mei1 (MGP_PahariEiJ_G0020073) #10	4930407I10Rik (MGP_PahariEiJ_G0020072)	MGP_PahariEiJ_G0020071	Desi1 (MGP_PahariEiJ_G0020070) #13	Xrcc6 (MGP_PahariEiJ_G0020069) #12	Ndufb11b (MGP_PahariEiJ_G0020068)	Pmm1 (MGP_PahariEiJ_G0020067) #14	Csdc2 (MGP_PahariEiJ_G0020066) #15	Polr3h (MGP_PahariEiJ_G0020065) #16	Aco2 (MGP_PahariEiJ_G0020064) #17	Phf5a (MGP_PahariEiJ_G0020063) #18	Tob2 (MGP_PahariEiJ_G0020062) #19	Tef (MGP_PahariEiJ_G0020061) #20	Zc3h7b (MGP_PahariEiJ_G0020060) #21	Rangap1 (MGP_PahariEiJ_G0020059) #22	Chadl (MGP_PahariEiJ_G0020058) #23	L3mbtl2 (MGP_PahariEiJ_G0020057) #24	Ep300 (MGP_PahariEiJ_G0020056) #25	Rbx1 (MGP_PahariEiJ_G0020055) #26	Dnajb7 (MGP_PahariEiJ_G0020054) #28	MGP_PahariEiJ_G0020053 #27	St13 (MGP_PahariEiJ_G0020052) #29	Slc25a17 (MGP_PahariEiJ_G0020051) #30	Mchr1 (MGP_PahariEiJ_G0020050) #31	Mrtfa (MGP_PahariEiJ_G0020049) #32	MGP_PahariEiJ_G0020048 #33	MGP_PahariEiJ_G0020047 #33	Adsl (MGP_PahariEiJ_G0020046) #34	Tnrc6b (MGP_PahariEiJ_G0020045) #35	Fam83f (MGP_PahariEiJ_G0020044) #36
Rat	MODERN SPECIES	17	Ccdc134 (ENSRNOG00000007262) #9	Mei1 (ENSRNOG00000007003) #10	LOC100362109 (ENSRNOG00000030150)	Snu13 (ENSRNOG00000006762) #11	Xrcc6 (ENSRNOG00000006392) #12	Desi1 (ENSRNOG00000005577) #13	RGD1306782 (ENSRNOG00000005572)	Pmm1 (ENSRNOG00000005358) #14	Csdc2 (ENSRNOG00000005332) #15	Polr3h (ENSRNOG00000004471) #16	Aco2 (ENSRNOG00000024128) #17	Phf5a (ENSRNOG00000024170) #18	Tob2 (ENSRNOG00000050500) #19	Tef (ENSRNOG00000019383) #20	Zc3h7b (ENSRNOG00000055925) #21	Rangap1 (ENSRNOG00000031789) #22	Chadl (ENSRNOG00000024631) #23	L3mbtl2 (ENSRNOG00000024743) #24	Ep300 (ENSRNOG00000065659) #25	Ep300 (ENSRNOG00000000190) #25	ENSRNOG00000070978	Rbx1 (ENSRNOG00000058914)	Dnajb7 (ENSRNOG00000019187) #28	Xpnpep3 (ENSRNOG00000019196) #27	Slc25a17 (ENSRNOG00000018920) #30	Mchr1 (ENSRNOG00000018895) #31	Mrtfa (ENSRNOG00000018803) #32	Sgsm3 (ENSRNOG00000018745) #33	Srek1ip1-ps1 (ENSRNOG00000066565)	Adsl (ENSRNOG00000018655) #34	Rpl26-ps1 (ENSRNOG00000032777)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1277	Srebf2 (ENSNGAG00000002154) #8	Ccdc134 (ENSNGAG00000016417) #9	Mei1 (ENSNGAG00000020170) #10	ENSNGAG00000020669	Snu13 (ENSNGAG00000012960) #11	Xrcc6 (ENSNGAG00000013750) #12	Desi1 (ENSNGAG00000015435) #13	Pmm1 (ENSNGAG00000019009) #14	Csdc2 (ENSNGAG00000011207) #15	Polr3h (ENSNGAG00000015009) #16	ENSNGAG00000015866 #17	Phf5a (ENSNGAG00000001430) #18	Tob2 (ENSNGAG00000008266) #19	Tef (ENSNGAG00000011439) #20	Zc3h7b (ENSNGAG00000013813) #21	Rangap1 (ENSNGAG00000014916) #22	Chadl (ENSNGAG00000009432) #23	L3mbtl2 (ENSNGAG00000019279) #24	Ep300 (ENSNGAG00000000598) #25	Rbx1 (ENSNGAG00000016899) #26	ENSNGAG00000017697	Xpnpep3 (ENSNGAG00000005811) #27	ENSNGAG00000016572 #29	Slc25a17 (ENSNGAG00000013608) #30	Mchr1 (ENSNGAG00000019906) #31
Lesser Egyptian jerboa	MODERN SPECIES	42	Srebf2 (ENSJJAG00000018773) #8	Ccdc134 (ENSJJAG00000016451) #9	ENSJJAG00000014856	Mei1 (ENSJJAG00000016715) #10	Snu13 (ENSJJAG00000014378) #11	Xrcc6 (ENSJJAG00000017136) #12	Desi1 (ENSJJAG00000019532) #13	ENSJJAG00000018569 #14	Csdc2 (ENSJJAG00000019289) #15	Polr3h (ENSJJAG00000017986) #16	Aco2 (ENSJJAG00000014029) #17	Phf5a (ENSJJAG00000011261) #18	Tob2 (ENSJJAG00000005169) #19	Tef (ENSJJAG00000010078) #20	Zc3h7b (ENSJJAG00000013804) #21	Rangap1 (ENSJJAG00000014253) #22	Chadl (ENSJJAG00000016665) #23	L3mbtl2 (ENSJJAG00000016073) #24	Ep300 (ENSJJAG00000020124) #25	Rbx1 (ENSJJAG00000021228) #26	Xpnpep3 (ENSJJAG00000016807) #27	ENSJJAG00000011081	ENSJJAG00000019427	Slc25a17 (ENSJJAG00000011965) #30	Mchr1 (ENSJJAG00000011702) #31	ENSJJAG00000019590 #32	ENSJJAG00000015055 #32	Sgsm3 (ENSJJAG00000014792) #33	Adsl (ENSJJAG00000016383) #34	Tnrc6b (ENSJJAG00000015779) #35	Fam83f (ENSJJAG00000011999) #36
Kangaroo rat	MODERN SPECIES	398	ENSDORG00000028498 #7	Srebf2 (ENSDORG00000000691) #8	Ccdc134 (ENSDORG00000000689) #9	ENSDORG00000029855 #10	Snu13 (ENSDORG00000027409) #11	Xrcc6 (ENSDORG00000009101) #12	Desi1 (ENSDORG00000011407) #13	Pmm1 (ENSDORG00000011755) #14	Csdc2 (ENSDORG00000024736) #15	Polr3h (ENSDORG00000002215) #16	Aco2 (ENSDORG00000002209) #17	Phf5a (ENSDORG00000002205) #18	Tob2 (ENSDORG00000002204) #19	Tef (ENSDORG00000014982) #20	Zc3h7b (ENSDORG00000013794) #21	Rangap1 (ENSDORG00000004657) #22	Chadl (ENSDORG00000027890) #23	L3mbtl2 (ENSDORG00000008914) #24	Ep300 (ENSDORG00000010258) #25	Rbx1 (ENSDORG00000014908) #26	Xpnpep3 (ENSDORG00000012776) #27	ENSDORG00000012775 #29	Slc25a17 (ENSDORG00000024929) #30	Mchr1 (ENSDORG00000023475) #31	Mrtfa (ENSDORG00000000727) #32	Sgsm3 (ENSDORG00000000722) #33	Adsl (ENSDORG00000003388) #34	Tnrc6b (ENSDORG00000003386) #35	Fam83f (ENSDORG00000013192) #36	Grap2 (ENSDORG00000015414) #37	Enthd1 (ENSDORG00000025046)
Rodentia_A	ANCESTRAL SPECIES	4	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000163470 #28	ENSGT00940000153657.A #27	ENSGT00390000001347 #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Hystricomorpha	ANCESTRAL SPECIES	13	ENSGT00940000163233 #7	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000163470 #28	ENSGT00940000153657.A #27	ENSGT00390000001347.z.a #29	ENSGT00920000149129.g #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Hystricomorpha_a	ANCESTRAL SPECIES	6	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840.y.b.b #11	ENSGT00550000074840.y.b.a.a ##11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000163470 #28	ENSGT00940000153657.A #27	ENSGT00390000001347.z.a #29	ENSGT00920000149129.g #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Guinea pig	MODERN SPECIES	28	SHISA8 (ENSCPOG00000040084) #7	SREBF2 (ENSCPOG00000013199) #8	CCDC134 (ENSCPOG00000000617) #9	ENSCPOG00000010113 #10	SNU13 (ENSCPOG00000040165) #11	XRCC6 (ENSCPOG00000003542) #12	DESI1 (ENSCPOG00000038083) #13	PMM1 (ENSCPOG00000014618) #14	CSDC2 (ENSCPOG00000037976) #15	POLR3H (ENSCPOG00000012650) #16	ACO2 (ENSCPOG00000012642) #17	PHF5A (ENSCPOG00000033309) #18	TOB2 (ENSCPOG00000031873) #19	TEF (ENSCPOG00000020591) #20	ZC3H7B (ENSCPOG00000004413) #21	RANGAP1 (ENSCPOG00000004404) #22	CHADL (ENSCPOG00000026967) #23	L3MBTL2 (ENSCPOG00000021063) #24	EP300 (ENSCPOG00000005438) #25	RBX1 (ENSCPOG00000035978) #26	XPNPEP3 (ENSCPOG00000002291) #27	ENSCPOG00000002290 #29	SLC25A17 (ENSCPOG00000002289) #30	MCHR1 (ENSCPOG00000012166) #31	MRTFA (ENSCPOG00000009883) #32	SGSM3 (ENSCPOG00000009876) #33	ADSL (ENSCPOG00000005715) #34	TNRC6B (ENSCPOG00000005705) #35	FAM83F (ENSCPOG00000014133) #36	GRAP2 (ENSCPOG00000040713) #37	ENTHD1 (ENSCPOG00000014129)
Hystricomorpha_b	ANCESTRAL SPECIES	2	ENSGT00940000163233 #7	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840.y.b.a.a ##11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000163470 #28	ENSGT00940000153657.A #27	ENSGT00390000001347.z.a #29	ENSGT00920000149129.g #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Long-tailed chinchilla	MODERN SPECIES	120	SREBF2 (ENSCLAG00000017059) #8	CCDC134 (ENSCLAG00000017160) #9	ENSCLAG00000017166 #10	ENSCLAG00000016769	SNU13 (ENSCLAG00000017182) ##11	XRCC6 (ENSCLAG00000016669) #12	DESI1 (ENSCLAG00000016871) #13	PMM1 (ENSCLAG00000016748) #14	CSDC2 (ENSCLAG00000016705) #15	POLR3H (ENSCLAG00000016948) #16	ACO2 (ENSCLAG00000016998) #17	ENSCLAG00000016714 #18	TOB2 (ENSCLAG00000016670) #19	TEF (ENSCLAG00000016418) #20	ZC3H7B (ENSCLAG00000015052) #21	RANGAP1 (ENSCLAG00000017330) #22	CHADL (ENSCLAG00000016821) #23	L3MBTL2 (ENSCLAG00000017319) #24	EP300 (ENSCLAG00000016995) #25	ENSCLAG00000016739 #26	DNAJB7 (ENSCLAG00000016674) #28	XPNPEP3 (ENSCLAG00000016993) #27	ST13 (ENSCLAG00000016711) #29	SLC25A17 (ENSCLAG00000016789) #30	MCHR1 (ENSCLAG00000016672) #31	MRTFA (ENSCLAG00000016828) #32	SGSM3 (ENSCLAG00000016510) #33	ADSL (ENSCLAG00000016908) #34	TNRC6B (ENSCLAG00000016942) #35	FAM83F (ENSCLAG00000016721) #36	GRAP2 (ENSCLAG00000016753) #37
Degu	MODERN SPECIES	197	ENSODEG00000013575 #8	ENSODEG00000013510 #8	CCDC134 (ENSODEG00000013183) #9	ENSODEG00000012993 #10	SNU13 (ENSODEG00000015632) ##11	XRCC6 (ENSODEG00000015847) #12	DESI1 (ENSODEG00000012652) #13	PMM1 (ENSODEG00000012155) #14	CSDC2 (ENSODEG00000015733) #15	ENSODEG00000013641 #16	ACO2 (ENSODEG00000012550) #17	ENSODEG00000013125 #18	TOB2 (ENSODEG00000020030) #19	TEF (ENSODEG00000014126) #20	ZC3H7B (ENSODEG00000012411) #21	RANGAP1 (ENSODEG00000014583) #22	CHADL (ENSODEG00000012116) #23	L3MBTL2 (ENSODEG00000013665) #24	ENSODEG00000019895	DIO1 (ENSODEG00000012387)	IFT25 (ENSODEG00000013069)	LRRC42 (ENSODEG00000012283)	LDLRAD1 (ENSODEG00000011774)	ENSODEG00000013663	TCEANC2 (ENSODEG00000013526)	CDCP2 (ENSODEG00000012753)	CYB5RL (ENSODEG00000013330)	MRPL37 (ENSODEG00000013096)	SSBP3 (ENSODEG00000011890)	ENSODEG00000020148	ACOT11 (ENSODEG00000011967)
Naked mole-rat female	MODERN SPECIES	24	SREBF2 (ENSHGLG00000010258) #8	CCDC134 (ENSHGLG00000015870) #9	MEI1 (ENSHGLG00000017177) #10	SNU13 (ENSHGLG00000018808) #11	ENSHGLG00000018078 #12	DESI1 (ENSHGLG00000039030) #13	PMM1 (ENSHGLG00000016980) #14	CSDC2 (ENSHGLG00000016778) #15	POLR3H (ENSHGLG00000014795) #16	Aco2 (ENSHGLG00000015463) #17	ENSHGLG00000041589	PHF5A (ENSHGLG00000042397) #18	TOB2 (ENSHGLG00000009302) #19	TEF (ENSHGLG00000050605) #20	ZC3H7B (ENSHGLG00000012263) #21	RANGAP1 (ENSHGLG00000015526) #22	CHADL (ENSHGLG00000018119) #23	L3MBTL2 (ENSHGLG00000018290) #24	EP300 (ENSHGLG00000015586) #25	RBX1 (ENSHGLG00000014822) #26	XPNPEP3 (ENSHGLG00000013429) #27	ENSHGLG00000013411 #29	SLC25A17 (ENSHGLG00000013720) #30	MCHR1 (ENSHGLG00000005319) #31	MRTFA (ENSHGLG00000009723) #32	SGSM3 (ENSHGLG00000018585) #33	ADSL (ENSHGLG00000016466) #34	ENSHGLG00000009306 #35	ENSHGLG00000038998	ENSHGLG00000042810	ENSHGLG00000018482
Sciuridae	ANCESTRAL SPECIES	14	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00940000163470 #28	ENSGT00390000001347 #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Marmotini	ANCESTRAL SPECIES	4	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00940000163470 #28	ENSGT00390000001347 #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C.c.a #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Marmotini_b	ANCESTRAL SPECIES	3	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00940000163470 #28	ENSGT00390000001347 #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C.c.a #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Squirrel	MODERN SPECIES	92	SHISA8 (ENSSTOG00000019466) #7	ENSSTOG00000012916 #8	CCDC134 (ENSSTOG00000012907) #9	MEI1 (ENSSTOG00000012870) #10	SNU13 (ENSSTOG00000009514) #11	XRCC6 (ENSSTOG00000009490) #12	DESI1 (ENSSTOG00000009480) #13	PMM1 (ENSSTOG00000026025) #14	CSDC2 (ENSSTOG00000020429) #15	POLR3H (ENSSTOG00000016215) #16	ACO2 (ENSSTOG00000016210) #17	PHF5A (ENSSTOG00000016207) #18	ENSSTOG00000016206 #19	TEF (ENSSTOG00000019642) #20	ZC3H7B (ENSSTOG00000016196) #21	RANGAP1 (ENSSTOG00000016191) #22	CHADL (ENSSTOG00000026534) #23	L3MBTL2 (ENSSTOG00000000242) #24	EP300 (ENSSTOG00000000722) #25	ENSSTOG00000015580 #26	XPNPEP3 (ENSSTOG00000003200) #27	ENSSTOG00000003165 #29	SLC25A17 (ENSSTOG00000004370) #30	MCHR1 (ENSSTOG00000010032) #31	MRTFA (ENSSTOG00000002947) #32	SGSM3 (ENSSTOG00000002927) #33	ENSSTOG00000000979 #34	TNRC6B (ENSSTOG00000008927) #35	FAM83F (ENSSTOG00000023057) #36	GRAP2 (ENSSTOG00000002229) #37	ENTHD1 (ENSSTOG00000002219)
Arctic ground squirrel	MODERN SPECIES	328	SREBF2 (ENSUPAG00010005777) #8	CCDC134 (ENSUPAG00010005788) #9	MEI1 (ENSUPAG00010005795) #10	ENSUPAG00010005838	SNU13 (ENSUPAG00010005841) #11	XRCC6 (ENSUPAG00010005843) #12	DESI1 (ENSUPAG00010005863) #13	PMM1 (ENSUPAG00010005870) #14	CSDC2 (ENSUPAG00010005885) #15	POLR3H (ENSUPAG00010005893) #16	ACO2 (ENSUPAG00010005914) #17	PHF5A (ENSUPAG00010005980) #18	TOB2 (ENSUPAG00010005994) #19	TEF (ENSUPAG00010005998) #20	ZC3H7B (ENSUPAG00010006013) #21	RANGAP1 (ENSUPAG00010006037) #22	CHADL (ENSUPAG00010006094) #23	L3MBTL2 (ENSUPAG00010006102) #24	EP300 (ENSUPAG00010006142) #25	RBX1 (ENSUPAG00010006183) #26	XPNPEP3 (ENSUPAG00010006211) #27	DNAJB7 (ENSUPAG00010006227) #28	ST13 (ENSUPAG00010006238) #29	SLC25A17 (ENSUPAG00010006258) #30	MCHR1 (ENSUPAG00010006286) #31	MRTFA (ENSUPAG00010006297) #32	SGSM3 (ENSUPAG00010006439) #33	ENSUPAG00010006489 #34	TNRC6B (ENSUPAG00010006574) #35	FAM83F (ENSUPAG00010006625) #36	GRAP2 (ENSUPAG00010006631) #37
Alpin marmot	MODERN SPECIES	76	SREBF2 (ENSMMMG00000003454) #8	CCDC134 (ENSMMMG00000003517) #9	MEI1 (ENSMMMG00000003545) #10	ENSMMMG00000003627	SNU13 (ENSMMMG00000003647) #11	ENSMMMG00000003671 #12	DESI1 (ENSMMMG00000003682) #13	PMM1 (ENSMMMG00000003696) #14	CSDC2 (ENSMMMG00000003735) #15	POLR3H (ENSMMMG00000003743) #16	ACO2 (ENSMMMG00000003764) #17	PHF5A (ENSMMMG00000003799) #18	TOB2 (ENSMMMG00000003805) #19	TEF (ENSMMMG00000003810) #20	ZC3H7B (ENSMMMG00000003824) #21	RANGAP1 (ENSMMMG00000003853) #22	L3MBTL2 (ENSMMMG00000003930) #24	EP300 (ENSMMMG00000004029) #25	RBX1 (ENSMMMG00000004102) #26	XPNPEP3 (ENSMMMG00000004122) #27	DNAJB7 (ENSMMMG00000004165) #28	ST13 (ENSMMMG00000004184) #29	ENSMMMG00000004215	SLC25A17 (ENSMMMG00000004230) #30	ENSMMMG00000004251	ENSMMMG00000004266	ENSMMMG00000004275	MCHR1 (ENSMMMG00000004286) #31	MRTFA (ENSMMMG00000004294) #32	SGSM3 (ENSMMMG00000004431) #33	ENSMMMG00000004472 #34
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	14	ENSSVLG00005021918	SREBF2 (ENSSVLG00005021885) #8	CCDC134 (ENSSVLG00005021846) #9	MEI1 (ENSSVLG00005021530) #10	ENSSVLG00005021427 ##11	XRCC6 (ENSSVLG00005021287) #12	DESI1 (ENSSVLG00005021220) #13	PMM1 (ENSSVLG00005021168) #14	CSDC2 (ENSSVLG00005021115) #15	POLR3H (ENSSVLG00005021062) #16	ACO2 (ENSSVLG00005021008) #17	PHF5A (ENSSVLG00005020965) #18	TOB2 (ENSSVLG00005020946) #19	TEF (ENSSVLG00005020887) #20	ZC3H7B (ENSSVLG00005020817) #21	ENSSVLG00005020791 #22	ENSSVLG00005020695 #22	CHADL (ENSSVLG00005020628) #23	L3MBTL2 (ENSSVLG00005020580) #24	EP300 (ENSSVLG00005020397) #25	ENSSVLG00005020321	RBX1 (ENSSVLG00005020266) #26	DNAJB7 (ENSSVLG00005020233) #28	XPNPEP3 (ENSSVLG00005020124) #27	SLC25A17 (ENSSVLG00005019724) #30	MCHR1 (ENSSVLG00005019589) #31	ENSSVLG00005019466	MRTFA (ENSSVLG00005018986) #32	SGSM3 (ENSSVLG00005018784) #33	ENSSVLG00005018698 #34	TNRC6B (ENSSVLG00005017928) #35
Eurasian red squirrel	MODERN SPECIES	14	SREBF2 (ENSSVLG00005021885) #8	CCDC134 (ENSSVLG00005021846) #9	MEI1 (ENSSVLG00005021530) #10	ENSSVLG00005021427 ##11	XRCC6 (ENSSVLG00005021287) #12	DESI1 (ENSSVLG00005021220) #13	PMM1 (ENSSVLG00005021168) #14	CSDC2 (ENSSVLG00005021115) #15	POLR3H (ENSSVLG00005021062) #16	ACO2 (ENSSVLG00005021008) #17	PHF5A (ENSSVLG00005020965) #18	TOB2 (ENSSVLG00005020946) #19	TEF (ENSSVLG00005020887) #20	ZC3H7B (ENSSVLG00005020817) #21	ENSSVLG00005020791 #22	ENSSVLG00005020695 #22	CHADL (ENSSVLG00005020628) #23	L3MBTL2 (ENSSVLG00005020580) #24	EP300 (ENSSVLG00005020397) #25	ENSSVLG00005020321	RBX1 (ENSSVLG00005020266) #26	DNAJB7 (ENSSVLG00005020233) #28	XPNPEP3 (ENSSVLG00005020124) #27	SLC25A17 (ENSSVLG00005019724) #30	MCHR1 (ENSSVLG00005019589) #31	ENSSVLG00005019466	MRTFA (ENSSVLG00005018986) #32	SGSM3 (ENSSVLG00005018784) #33	ENSSVLG00005018698 #34	TNRC6B (ENSSVLG00005017928) #35	FAM83F (ENSSVLG00005017783) #36
Lagomorpha	ANCESTRAL SPECIES	76	ENSGT00940000154485.A	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840.y.b.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00940000163470 #28	ENSGT00390000001347 #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Rabbit	MODERN SPECIES	467	ENSOCUG00000013186	SREBF2 (ENSOCUG00000003178) #8	CCDC134 (ENSOCUG00000013355) #9	MEI1 (ENSOCUG00000013337) #10	SNU13 (ENSOCUG00000023785) #11	XRCC6 (ENSOCUG00000006948) #12	ENSOCUG00000011875 #13	PMM1 (ENSOCUG00000006941) #14	CSDC2 (ENSOCUG00000006938) #15	POLR3H (ENSOCUG00000007275) #16	ACO2 (ENSOCUG00000021368) #17	PHF5A (ENSOCUG00000012705) #18	TOB2 (ENSOCUG00000027909) #19	TEF (ENSOCUG00000012866) #20	ZC3H7B (ENSOCUG00000002712) #21	RANGAP1 (ENSOCUG00000002704) #22	CHADL (ENSOCUG00000002701) #23	L3MBTL2 (ENSOCUG00000002689) #24	EP300 (ENSOCUG00000011434) #25	ENSOCUG00000035746 #26	XPNPEP3 (ENSOCUG00000009642) #27	DNAJB7 (ENSOCUG00000009651) #28	ENSOCUG00000009636 #29	SLC25A17 (ENSOCUG00000009630) #30	MCHR1 (ENSOCUG00000017616) #31	ENSOCUG00000023730 #32	ENSOCUG00000036824 #32	SGSM3 (ENSOCUG00000012665) #33	ADSL (ENSOCUG00000016161) #34	TNRC6B (ENSOCUG00000016128) #35	FAM83F (ENSOCUG00000014060) #36
Pika	MODERN SPECIES	5257																ENSOPRG00000012340 #22	CHADL (ENSOPRG00000012324) #23	L3MBTL2 (ENSOPRG00000012304) #24	EP300 (ENSOPRG00000012268) #25
Tree shrew	MODERN SPECIES	5962																RANGAP1 (ENSTBEG00000016700) #22	L3MBTL2 (ENSTBEG00000015918) #24
Laurasiatheria	ANCESTRAL SPECIES	6	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00940000163470 #28	ENSGT00390000001347 #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00440000039203 #22
Hedgehog	MODERN SPECIES	413																RANGAP1 (ENSEEUG00000003514) #22
Laurasiatheria_a	ANCESTRAL SPECIES	6	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00940000163470 #28	ENSGT00390000001347.v #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Artiodactyla	ANCESTRAL SPECIES	6	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000163470 #28	ENSGT00940000153657.A #27	ENSGT00390000001347.v.n.b #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Suina	ANCESTRAL SPECIES	21	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00940000163470 #28	ENSGT00990000212282	ENSGT00390000001347.v.n.a #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36
Pig	MODERN SPECIES	13	SREBF2 (ENSSSCG00000026092) #8	CCDC134 (ENSSSCG00000035565) #9	MEI1 (ENSSSCG00000034405) #10	ENSSSCG00000057322	SNU13 (ENSSSCG00000000058) #11	XRCC6 (ENSSSCG00000000059) #12	DESI1 (ENSSSCG00000034265) #13	PMM1 (ENSSSCG00000000061) #14	CSDC2 (ENSSSCG00000000062) #15	POLR3H (ENSSSCG00000000063) #16	ACO2 (ENSSSCG00000000064) #17	PHF5A (ENSSSCG00000035082) #18	TOB2 (ENSSSCG00000037958) #19	TEF (ENSSSCG00000035152) #20	ZC3H7B (ENSSSCG00000033036) #21	RANGAP1 (ENSSSCG00000028202) #22	CHADL (ENSSSCG00000000067) #23	L3MBTL2 (ENSSSCG00000000066) #24	EP300 (ENSSSCG00000000068) #25	ENSSSCG00000034230 #26	XPNPEP3 (ENSSSCG00000033823) #27	ENSSSCG00000034801	ST13 (ENSSSCG00000000071) #29	SLC25A17 (ENSSSCG00000000072) #30	ENSSSCG00000061921	MCHR1 (ENSSSCG00000000074) #31	ENSSSCG00000000075 #32	SGSM3 (ENSSSCG00000000076) #33	ENSSSCG00000055170 #32	ADSL (ENSSSCG00000000077) #34	TNRC6B (ENSSSCG00000000078) #35
Chacoan peccary	MODERN SPECIES	871	SHISA8 (ENSCWAG00000019272) #7	SREBF2 (ENSCWAG00000011027) #8	CCDC134 (ENSCWAG00000011088) #9	MEI1 (ENSCWAG00000011137) #10	SNU13 (ENSCWAG00000011528) #11	XRCC6 (ENSCWAG00000011601) #12	DESI1 (ENSCWAG00000011787) #13	PMM1 (ENSCWAG00000011902) #14	CSDC2 (ENSCWAG00000011932) #15	POLR3H (ENSCWAG00000011965) #16	ACO2 (ENSCWAG00000012041) #17	PHF5A (ENSCWAG00000012101) #18	TOB2 (ENSCWAG00000012139) #19	TEF (ENSCWAG00000012151) #20	ZC3H7B (ENSCWAG00000012215) #21	RANGAP1 (ENSCWAG00000012282) #22	CHADL (ENSCWAG00000012334) #23	L3MBTL2 (ENSCWAG00000012412) #24	EP300 (ENSCWAG00000012442) #25	ENSCWAG00000012771	RBX1 (ENSCWAG00000012787) #26	XPNPEP3 (ENSCWAG00000012851) #27	ENSCWAG00000012977 #28	ENSCWAG00000012999	ST13 (ENSCWAG00000013022) #29	SLC25A17 (ENSCWAG00000013072) #30	MCHR1 (ENSCWAG00000013134) #31	MRTFA (ENSCWAG00000013293) #32	SGSM3 (ENSCWAG00000013567) #33	ADSL (ENSCWAG00000013708) #34	TNRC6B (ENSCWAG00000013879) #35
Artiodactyla_a	ANCESTRAL SPECIES	5	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000163470 #28	ENSGT00940000153657.A #27	ENSGT00390000001347.v.n.b #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Artiodactyla_b	ANCESTRAL SPECIES	5	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000163470 #28	ENSGT00940000153657.A #27	ENSGT00390000001347.v.n.b #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Cetacea	ANCESTRAL SPECIES	8	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b.k #11	ENSGT00940000153239.B.m #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618.fb.a #26	ENSGT00940000163470 #28	ENSGT00940000153657.A.k.a #27	ENSGT00390000001347.v.n.b #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Odontoceti	ANCESTRAL SPECIES	7	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b.k #11	ENSGT00940000153239.B.m #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000153657.A.k.a #27	ENSGT00390000001347.v.n.b #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37	ENSGT00940000161730	ENSGT00940000158594
Odontoceti_a	ANCESTRAL SPECIES	6	ENSGT00940000163233 #7	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840.y.b.k #11	ENSGT00940000153239.B.m #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518.g #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618.fb.a #26	ENSGT00940000153657.A.k.a #27	ENSGT00390000001347.v.n.b #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37	ENSGT00940000161730
Odontoceti_b	ANCESTRAL SPECIES	7	ENSGT00940000163233 #7	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840.y.b.k #11	ENSGT00940000153239.B.m #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518.g #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00420000029792.i	ENSGT00940000155618.fb.a #26	ENSGT00940000153657.A.k.a #27	ENSGT00390000001347.v.n.b #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Monodontidae	ANCESTRAL SPECIES	6	ENSGT00940000163233 #7	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840.y.b.k #11	ENSGT00940000153239.B.m #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518.g #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00420000029792.i	ENSGT00940000155618.fb.a #26	ENSGT00940000153657.A.k.a #27	ENSGT00390000001347.v.n.b #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Beluga whale	DUPLICATION
Beluga whale	MODERN SPECIES	111	SNU13 (ENSDLEG00000016619) #11	ENSDLEG00000016391 #12	ENSDLEG00000016354	DESI1 (ENSDLEG00000016339) #13	PMM1 (ENSDLEG00000016320) #14	CSDC2 (ENSDLEG00000016311) #15	POLR3H (ENSDLEG00000016302) #16	ACO2 (ENSDLEG00000016194) #17	PHF5A (ENSDLEG00000016171) #18	TOB2 (ENSDLEG00000016165) #19	TEF (ENSDLEG00000016157) #20	ZC3H7B (ENSDLEG00000016127) #21	ENSDLEG00000015992 #22	ENSDLEG00000015952 #23	ENSDLEG00000015788 #24	ENSDLEG00000015729 #22	ENSDLEG00000015706 #23	ENSDLEG00000011889 #24	EP300 (ENSDLEG00000011805) #25	ENSDLEG00000011787	RBX1 (ENSDLEG00000011777) #26	XPNPEP3 (ENSDLEG00000011748) #27	ENSDLEG00000011732 #29	SLC25A17 (ENSDLEG00000011720) #30	MCHR1 (ENSDLEG00000011702) #31	MRTFA (ENSDLEG00000011650) #32	SGSM3 (ENSDLEG00000011556) #33	ADSL (ENSDLEG00000011502) #34	TNRC6B (ENSDLEG00000011432) #35	FAM83F (ENSDLEG00000011396) #36	GRAP2 (ENSDLEG00000011374) #37
Beluga whale	MODERN SPECIES	111	SREBF2 (ENSDLEG00000016960) #8	ENSDLEG00000016945	MEI1 (ENSDLEG00000016651) #10	SNU13 (ENSDLEG00000016619) #11	ENSDLEG00000016391 #12	ENSDLEG00000016354	DESI1 (ENSDLEG00000016339) #13	PMM1 (ENSDLEG00000016320) #14	CSDC2 (ENSDLEG00000016311) #15	POLR3H (ENSDLEG00000016302) #16	ACO2 (ENSDLEG00000016194) #17	PHF5A (ENSDLEG00000016171) #18	TOB2 (ENSDLEG00000016165) #19	TEF (ENSDLEG00000016157) #20	ZC3H7B (ENSDLEG00000016127) #21	ENSDLEG00000015992 #22	ENSDLEG00000015952 #23	ENSDLEG00000015788 #24	ENSDLEG00000015729 #22	ENSDLEG00000015706 #23	ENSDLEG00000011889 #24	EP300 (ENSDLEG00000011805) #25	ENSDLEG00000011787	RBX1 (ENSDLEG00000011777) #26	XPNPEP3 (ENSDLEG00000011748) #27	ENSDLEG00000011732 #29	SLC25A17 (ENSDLEG00000011720) #30	MCHR1 (ENSDLEG00000011702) #31	MRTFA (ENSDLEG00000011650) #32	SGSM3 (ENSDLEG00000011556) #33	ADSL (ENSDLEG00000011502) #34
Narwhal	MODERN SPECIES	313	SREBF2 (ENSMMNG00015018518) #8	CCDC134 (ENSMMNG00015018478) #9	MEI1 (ENSMMNG00015018390) #10	SNU13 (ENSMMNG00015018317) #11	ENSMMNG00015018285	ENSMMNG00015018237 #12	DESI1 (ENSMMNG00015018207) #13	PMM1 (ENSMMNG00015018177) #14	CSDC2 (ENSMMNG00015018146) #15	POLR3H (ENSMMNG00015018103) #16	ACO2 (ENSMMNG00015017952) #17	PHF5A (ENSMMNG00015017910) #18	TOB2 (ENSMMNG00015017903) #19	TEF (ENSMMNG00015017847) #20	ZC3H7B (ENSMMNG00015017794) #21	RANGAP1 (ENSMMNG00015017739) #22	CHADL (ENSMMNG00015017707) #23	L3MBTL2 (ENSMMNG00015017671) #24	EP300 (ENSMMNG00015017471) #25	ENSMMNG00015017443	ENSMMNG00015017418 #26	ENSMMNG00015017374 #27	ENSMMNG00015017322 #29	SLC25A17 (ENSMMNG00015017233) #30	MCHR1 (ENSMMNG00015017183) #31	MRTFA (ENSMMNG00015017058) #32	SGSM3 (ENSMMNG00015016971) #33	ADSL (ENSMMNG00015016797) #34	TNRC6B (ENSMMNG00015016449) #35	FAM83F (ENSMMNG00015016316) #36	GRAP2 (ENSMMNG00015016272) #37
Vaquita	MODERN SPECIES	1	SHISA8 (ENSPSNG00000006462) #7	SREBF2 (ENSPSNG00000006495) #8	CCDC134 (ENSPSNG00000006568) #9	MEI1 (ENSPSNG00000006612) #10	SNU13 (ENSPSNG00000006667) #11	ENSPSNG00000006727 #12	DESI1 (ENSPSNG00000006766) #13	PMM1 (ENSPSNG00000006869) #14	CSDC2 (ENSPSNG00000006894) #15	POLR3H (ENSPSNG00000006925) #16	ACO2 (ENSPSNG00000006999) #17	PHF5A (ENSPSNG00000007072) #18	TOB2 (ENSPSNG00000007102) #19	TEF (ENSPSNG00000007130) #20	ZC3H7B (ENSPSNG00000007187) #21	RANGAP1 (ENSPSNG00000007244) #22	CHADL (ENSPSNG00000007294) #23	L3MBTL2 (ENSPSNG00000007368) #24	ENSPSNG00000007413	EP300 (ENSPSNG00000007446) #25	ENSPSNG00000007559	RBX1 (ENSPSNG00000007572) #26	XPNPEP3 (ENSPSNG00000007604) #27	ENSPSNG00000007658 #29	SLC25A17 (ENSPSNG00000007697) #30	MCHR1 (ENSPSNG00000007750) #31	MRTFA (ENSPSNG00000007857) #32	SGSM3 (ENSPSNG00000008035) #33	ADSL (ENSPSNG00000008171) #34	TNRC6B (ENSPSNG00000008458) #35	FAM83F (ENSPSNG00000008652) #36
Dolphin	MODERN SPECIES	3094										POLR3H (ENSTTRG00000003373) #16	ACO2 (ENSTTRG00000003371) #17	PHF5A (ENSTTRG00000003369) #18	TOB2 (ENSTTRG00000003366) #19	TEF (ENSTTRG00000003365) #20	ZC3H7B (ENSTTRG00000003362) #21	RANGAP1 (ENSTTRG00000003359) #22	CHADL (ENSTTRG00000003358) #23	L3MBTL2 (ENSTTRG00000003350) #24	EP300 (ENSTTRG00000003342) #25
Sperm whale	MODERN SPECIES	38													TOB2 (ENSPCTG00005022106) #19	TEF (ENSPCTG00005022099) #20	ZC3H7B (ENSPCTG00005022087) #21	RANGAP1 (ENSPCTG00005022082) #22	CHADL (ENSPCTG00005022074) #23	L3MBTL2 (ENSPCTG00005022052) #24
Blue whale	MODERN SPECIES	1	SREBF2 (ENSBMSG00010014793) #8	CCDC134 (ENSBMSG00010014735) #9	MEI1 (ENSBMSG00010014550) #10	ENSBMSG00010014449 #11	ENSBMSG00010014265 #12	DESI1 (ENSBMSG00010014206) #13	PMM1 (ENSBMSG00010014166) #14	CSDC2 (ENSBMSG00010014140) #15	ENSBMSG00010014114	POLR3H (ENSBMSG00010014040) #16	ACO2 (ENSBMSG00010013926) #17	ENSBMSG00010013857 #18	TOB2 (ENSBMSG00010013844) #19	ENSBMSG00010011228 #20	ZC3H7B (ENSBMSG00010011209) #21	RANGAP1 (ENSBMSG00010011194) #22	CHADL (ENSBMSG00010011175) #23	L3MBTL2 (ENSBMSG00010011148) #24	EP300 (ENSBMSG00010010998) #25	ENSBMSG00010010940 #26	ENSBMSG00010010899 #27	ST13 (ENSBMSG00010010885) #29	SLC25A17 (ENSBMSG00010010859) #30	MCHR1 (ENSBMSG00010010832) #31	MRTFA (ENSBMSG00010010792) #32	SGSM3 (ENSBMSG00010010739) #33	ADSL (ENSBMSG00010010596) #34	ENSBMSG00010010564	TNRC6B (ENSBMSG00010010473) #35	FAM83F (ENSBMSG00010010409) #36	GRAP2 (ENSBMSG00010010395) #37
Pecora	ANCESTRAL SPECIES	3	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.u.b #29	ENSGT00940000163470 #28	ENSGT00390000001347.v.n.a #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36
Yarkand deer	MODERN SPECIES	14	SREBF2 (ENSCHYG00000023277) #8	CCDC134 (ENSCHYG00000023225) #9	MEI1 (ENSCHYG00000023169) #10	ENSCHYG00000023150	SNU13 (ENSCHYG00000023097) #11	XRCC6 (ENSCHYG00000022928) #12	DESI1 (ENSCHYG00000022886) #13	PMM1 (ENSCHYG00000022842) #14	CSDC2 (ENSCHYG00000022821) #15	POLR3H (ENSCHYG00000022721) #16	ACO2 (ENSCHYG00000022583) #17	PHF5A (ENSCHYG00000022548) #18	TOB2 (ENSCHYG00000022537) #19	TEF (ENSCHYG00000022489) #20	ZC3H7B (ENSCHYG00000022171) #21	RANGAP1 (ENSCHYG00000022092) #22	CHADL (ENSCHYG00000022049) #23	L3MBTL2 (ENSCHYG00000021964) #24	EP300 (ENSCHYG00000021494) #25	ENSCHYG00000021391	ENSCHYG00000021280	DNAJB7 (ENSCHYG00000021227) #28	XPNPEP3 (ENSCHYG00000020994) #27	ENSCHYG00000020840 #29	SLC25A17 (ENSCHYG00000020675) #30	MCHR1 (ENSCHYG00000020632) #31	MRTFA (ENSCHYG00000018451) #32	SGSM3 (ENSCHYG00000020154) #33	ENSCHYG00000017987 #34	TNRC6B (ENSCHYG00000016871) #35	FAM83F (ENSCHYG00000016679) #36
Percora_a	ANCESTRAL SPECIES	3	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.u.b #29	ENSGT00940000163470 #28	ENSGT00390000001347.v.n.a #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36
Siberian musk deer	MODERN SPECIES	1247	SREBF2 (ENSMMSG00000023975) #8	CCDC134 (ENSMMSG00000023987) #9	MEI1 (ENSMMSG00000023993) #10	ENSMMSG00000024007	SNU13 (ENSMMSG00000024016) #11	XRCC6 (ENSMMSG00000013395) #12	DESI1 (ENSMMSG00000013489) #13	PMM1 (ENSMMSG00000013501) #14	CSDC2 (ENSMMSG00000013524) #15	POLR3H (ENSMMSG00000013540) #16	ACO2 (ENSMMSG00000013563) #17	ENSMMSG00000013644 #18	TOB2 (ENSMMSG00000013665) #19	TEF (ENSMMSG00000013679) #20	ZC3H7B (ENSMMSG00000013723) #21	RANGAP1 (ENSMMSG00000013802) #22	CHADL (ENSMMSG00000013880) #23	L3MBTL2 (ENSMMSG00000013921) #24	EP300 (ENSMMSG00000013986) #25	RBX1 (ENSMMSG00000014067) #26	XPNPEP3 (ENSMMSG00000014083) #27	DNAJB7 (ENSMMSG00000014099) #28	ST13 (ENSMMSG00000014107) #29	SLC25A17 (ENSMMSG00000014156) #30	ENSMMSG00000014246	MCHR1 (ENSMMSG00000014255) #31	MRTFA (ENSMMSG00000014290) #32	SGSM3 (ENSMMSG00000014416) #33	ADSL (ENSMMSG00000014463) #34	TNRC6B (ENSMMSG00000014702) #35	FAM83F (ENSMMSG00000015097) #36
Bovidae	ANCESTRAL SPECIES	3	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.u.b #29	ENSGT00940000163470 #28	ENSGT00390000001347.v.n.a #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36
Bovinae	ANCESTRAL SPECIES	10	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100.d #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.u.b #29	ENSGT00940000163470 #28	ENSGT00390000001347.v.n.a #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36
Bos	ANCESTRAL SPECIES	2	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100.d #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.u.b #29	ENSGT00940000163470 #28	ENSGT00390000001347.v.n.a #29	ENSGT00950000182891.a.a.b.b	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35
Bos_b	ANCESTRAL SPECIES	30	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100.d #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00940000163470 #28	ENSGT00390000001347.v.n.a #29	ENSGT00950000182891.a.a.b.b	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36
Cow	MODERN SPECIES	24	SREBF2 (ENSBTAG00000014265) #8	CCDC134 (ENSBTAG00000021173) #9	MEI1 (ENSBTAG00000004488) #10	ENSBTAG00000047629	SNU13 (ENSBTAG00000006104) #11	XRCC6 (ENSBTAG00000006103) #12	DESI1 (ENSBTAG00000047942) #13	PMM1 (ENSBTAG00000004009) #14	CSDC2 (ENSBTAG00000004004) #15	POLR3H (ENSBTAG00000005311) #16	ACO2 (ENSBTAG00000006429) #17	PHF5A (ENSBTAG00000006423) #18	TOB2 (ENSBTAG00000015109) #19	TEF (ENSBTAG00000016580) #20	ZC3H7B (ENSBTAG00000002782) #21	RANGAP1 (ENSBTAG00000012481) #22	CHADL (ENSBTAG00000040106) #23	L3MBTL2 (ENSBTAG00000030222) #24	EP300 (ENSBTAG00000016198) #25	RBX1 (ENSBTAG00000053583) #26	DNAJB7 (ENSBTAG00000006205) #28	XPNPEP3 (ENSBTAG00000006204) #27	ST13 (ENSBTAG00000006202) #29	ENSBTAG00000054845	SLC25A17 (ENSBTAG00000006200) #30	MCHR1 (ENSBTAG00000004048) #31	MRTFA (ENSBTAG00000002630) #32	SGSM3 (ENSBTAG00000009624) #33	ADSL (ENSBTAG00000000077) #34	TNRC6B (ENSBTAG00000021076) #35	FAM83F (ENSBTAG00000014247) #36
Hybrid Bos Indicus	MODERN SPECIES	24	CCDC134 (ENSBIXG00005030005) #9	MEI1 (ENSBIXG00005030034) #10	ENSBIXG00005030078	SNU13 (ENSBIXG00005030086) #11	XRCC6 (ENSBIXG00005030124) #12	DESI1 (ENSBIXG00005030174) #13	ENSBIXG00005030184	PMM1 (ENSBIXG00005030190) #14	CSDC2 (ENSBIXG00005030210) #15	POLR3H (ENSBIXG00005030223) #16	ACO2 (ENSBIXG00005030244) #17	PHF5A (ENSBIXG00005030276) #18	TOB2 (ENSBIXG00005030282) #19	TEF (ENSBIXG00005030291) #20	ZC3H7B (ENSBIXG00005005261) #21	RANGAP1 (ENSBIXG00005029195) #22	CHADL (ENSBIXG00005001706) #23	L3MBTL2 (ENSBIXG00005001768) #24	EP300 (ENSBIXG00005029142) #25	ENSBIXG00005028979 #26	XPNPEP3 (ENSBIXG00005028956) #27	DNAJB7 (ENSBIXG00005002171) #28	ST13 (ENSBIXG00005005077) #29	SLC25A17 (ENSBIXG00005005058) #30	MCHR1 (ENSBIXG00005028885) #31	MRTFA (ENSBIXG00005002283) #32	ENSBIXG00005028750	SGSM3 (ENSBIXG00005028733) #33	ADSL (ENSBIXG00005028664) #34	TNRC6B (ENSBIXG00005028516) #35	FAM83F (ENSBIXG00005004869) #36
Bos_a	ANCESTRAL SPECIES	24	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100.d #13	ENSGT01100000263480.a.a.b.b.b.a.a.b.a.a.b.a.b.a.a.a.b	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000168153	ENSGT00940000163470 #28	ENSGT00940000153657.A #27	ENSGT00390000001347.v.n.a #29	ENSGT00950000182891.a.a.b.b	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36
Wild yak	MODERN SPECIES	2416		CCDC134 (ENSBMUG00000016817) #9	MEI1 (ENSBMUG00000016769) #10	ENSBMUG00000016715	SNU13 (ENSBMUG00000016711) #11	XRCC6 (ENSBMUG00000016669) #12	ENSBMUG00000016533	PMM1 (ENSBMUG00000016511) #14	CSDC2 (ENSBMUG00000016496) #15	POLR3H (ENSBMUG00000016468) #16	ACO2 (ENSBMUG00000016428) #17	PHF5A (ENSBMUG00000016413) #18	ENSBMUG00000016406 #19	TEF (ENSBMUG00000016387) #20	ZC3H7B (ENSBMUG00000016375) #21	RANGAP1 (ENSBMUG00000016341) #22	ENSBMUG00000016306 #23	L3MBTL2 (ENSBMUG00000016250) #24	EP300 (ENSBMUG00000016206) #25	ENSBMUG00000016140	DNAJB7 (ENSBMUG00000016085) #28	XPNPEP3 (ENSBMUG00000016068) #27	ENSBMUG00000016028 #29
Domestic yak	MODERN SPECIES	24	ENSBGRG00000009110	SNU13 (ENSBGRG00000009006) #11	XRCC6 (ENSBGRG00000008781) #12	DESI1 (ENSBGRG00000008734) #13	ENSBGRG00000008726 #13	ENSBGRG00000008717	PMM1 (ENSBGRG00000008653) #14	CSDC2 (ENSBGRG00000008598) #15	POLR3H (ENSBGRG00000008506) #16	PHF5A (ENSBGRG00000008433) #18	ACO2 (ENSBGRG00000007814) #17	TOB2 (ENSBGRG00000007744) #19	TEF (ENSBGRG00000007661) #20	ZC3H7B (ENSBGRG00000007031) #21	ENSBGRG00000006985	RANGAP1 (ENSBGRG00000006909) #22	CHADL (ENSBGRG00000006835) #23	L3MBTL2 (ENSBGRG00000006582) #24	EP300 (ENSBGRG00000006401) #25	ENSBGRG00000006304	DNAJB7 (ENSBGRG00000006284) #28	XPNPEP3 (ENSBGRG00000006217) #27	ST13 (ENSBGRG00000006165) #29	ENSBGRG00000006125	SLC25A17 (ENSBGRG00000006056) #30	MCHR1 (ENSBGRG00000009343) #31	MRTFA (ENSBGRG00000008675) #32	SGSM3 (ENSBGRG00000008503) #33	ADSL (ENSBGRG00000008001) #34	TNRC6B (ENSBGRG00000007053) #35	FAM83F (ENSBGRG00000006932) #36
American bison	MODERN SPECIES	2520		CCDC134 (ENSBBBG00000004265) #9	MEI1 (ENSBBBG00000017211) #10	ENSBBBG00000017162	SNU13 (ENSBBBG00000017154) #11	XRCC6 (ENSBBBG00000017117) #12	DESI1 (ENSBBBG00000016954) #13	PMM1 (ENSBBBG00000016943) #14	CSDC2 (ENSBBBG00000004183) #15	POLR3H (ENSBBBG00000016919) #16	ACO2 (ENSBBBG00000016876) #17	PHF5A (ENSBBBG00000004165) #18	ENSBBBG00000016832 #19	TEF (ENSBBBG00000016815) #20	ZC3H7B (ENSBBBG00000007907) #21	RANGAP1 (ENSBBBG00000004143) #22	L3MBTL2 (ENSBBBG00000008378) #24	EP300 (ENSBBBG00000004102) #25	ENSBBBG00000000757 #26	XPNPEP3 (ENSBBBG00000016577) #27	ENSBBBG00000016560 #28	ST13 (ENSBBBG00000016558) #29
Caprinae	ANCESTRAL SPECIES		ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00940000163470 #28	ENSGT00390000001347.v.n.a #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Rambouillet Sheep	MODERN SPECIES	19	SREBF2 (ENSOARG00020024824) #8	CCDC134 (ENSOARG00020024805) #9	MEI1 (ENSOARG00020024711) #10	ENSOARG00020024666	ENSOARG00020024631 #11	ENSOARG00020024613 #12	DESI1 (ENSOARG00020024591) #13	PMM1 (ENSOARG00020024579) #14	CSDC2 (ENSOARG00020024566) #15	POLR3H (ENSOARG00020024546) #16	ACO2 (ENSOARG00020024476) #17	PHF5A (ENSOARG00020024461) #18	TOB2 (ENSOARG00020024450) #19	TEF (ENSOARG00020024430) #20	ZC3H7B (ENSOARG00020024392) #21	RANGAP1 (ENSOARG00020024343) #22	CHADL (ENSOARG00020024330) #23	L3MBTL2 (ENSOARG00020024288) #24	EP300 (ENSOARG00020024211) #25	RBX1 (ENSOARG00020024169) #26	DNAJB7 (ENSOARG00020024159) #28	XPNPEP3 (ENSOARG00020024132) #27	ST13 (ENSOARG00020024111) #29	SLC25A17 (ENSOARG00020024071) #30	MCHR1 (ENSOARG00020024030) #31	MRTFA (ENSOARG00020023983) #32	ENSOARG00020023916 #33	ENSOARG00020023873 #33	ADSL (ENSOARG00020023696) #34	TNRC6B (ENSOARG00020023375) #35	FAM83F (ENSOARG00020023308) #36
Goat	MODERN SPECIES	24	ENSCHIG00000023993	CCDC134 (ENSCHIG00000008926) #9	MEI1 (ENSCHIG00000014057) #10	ENSCHIG00000017103	ENSCHIG00000015834 #11	XRCC6 (ENSCHIG00000012853) #12	DESI1 (ENSCHIG00000017498) #13	PMM1 (ENSCHIG00000006787) #14	CSDC2 (ENSCHIG00000021658) #15	POLR3H (ENSCHIG00000013984) #16	ACO2 (ENSCHIG00000007877) #17	PHF5A (ENSCHIG00000015826) #18	TOB2 (ENSCHIG00000003528) #19	TEF (ENSCHIG00000016008) #20	ZC3H7B (ENSCHIG00000020469) #21	RANGAP1 (ENSCHIG00000026389) #22	CHADL (ENSCHIG00000025971) #23	L3MBTL2 (ENSCHIG00000021479) #24	EP300 (ENSCHIG00000017767) #25	ENSCHIG00000025708 #26	DNAJB7 (ENSCHIG00000012831) #28	XPNPEP3 (ENSCHIG00000016070) #27	ENSCHIG00000017681 #29	SLC25A17 (ENSCHIG00000026918) #30	MCHR1 (ENSCHIG00000022709) #31	MRTFA (ENSCHIG00000016119) #32	SGSM3 (ENSCHIG00000018086) #33	ENSCHIG00000016369 #34	TNRC6B (ENSCHIG00000003491) #35	FAM83F (ENSCHIG00000026060) #36	GRAP2 (ENSCHIG00000015296) #37
Camelidae	ANCESTRAL SPECIES	28	ENSGT00940000154485.A	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840.y.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00940000163470 #28	ENSGT00390000001347.v.n.b #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Arabian camel	MODERN SPECIES	3	TNFRSF13C (ENSCDRG00005003774)	SREBF2 (ENSCDRG00005003590) #8	CCDC134 (ENSCDRG00005003531) #9	MEI1 (ENSCDRG00005003416) #10	SNU13 (ENSCDRG00005003357) #11	XRCC6 (ENSCDRG00005003310) #12	DESI1 (ENSCDRG00005017505) #13	PMM1 (ENSCDRG00005017476) #14	CSDC2 (ENSCDRG00005017436) #15	POLR3H (ENSCDRG00005017372) #16	ACO2 (ENSCDRG00005017299) #17	PHF5A (ENSCDRG00005017267) #18	TOB2 (ENSCDRG00005017252) #19	TEF (ENSCDRG00005017170) #20	ZC3H7B (ENSCDRG00005017099) #21	RANGAP1 (ENSCDRG00005017066) #22	CHADL (ENSCDRG00005017024) #23	L3MBTL2 (ENSCDRG00005016922) #24	EP300 (ENSCDRG00005016690) #25	RBX1 (ENSCDRG00005016650) #26	DNAJB7 (ENSCDRG00005016641) #28	XPNPEP3 (ENSCDRG00005016561) #27	ST13 (ENSCDRG00005016448) #29	SLC25A17 (ENSCDRG00005016332) #30	MCHR1 (ENSCDRG00005016289) #31	ENSCDRG00005016267	MRTFA (ENSCDRG00005016155) #32	SGSM3 (ENSCDRG00005016107) #33	ADSL (ENSCDRG00005015465) #34	TNRC6B (ENSCDRG00005014891) #35	FAM83F (ENSCDRG00005014830) #36
Laurasiatheria_b	ANCESTRAL SPECIES	6	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00940000163470 #28	ENSGT00390000001347.v #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Laurasiatheria_c	ANCESTRAL SPECIES	5	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00940000163470 #28	ENSGT00390000001347.v #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Chiroptera	ANCESTRAL SPECIES	23	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00940000163470 #28	ENSGT00390000001347.v #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Megabat	MODERN SPECIES	3648																RANGAP1 (ENSPVAG00000012781) #22	CHADL (ENSPVAG00000012779) #23	L3MBTL2 (ENSPVAG00000012775) #24	EP300 (ENSPVAG00000012771) #25
Microchiroptera	ANCESTRAL SPECIES	8	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00940000163470 #28	ENSGT00390000001347.v #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Microbat	MODERN SPECIES	1176	MEI1 (ENSMLUG00000002527) #10	ENSMLUG00000027511	ENSMLUG00000026652	ENSMLUG00000023695	SNU13 (ENSMLUG00000002526) #11	XRCC6 (ENSMLUG00000002516) #12	DESI1 (ENSMLUG00000002511) #13	PMM1 (ENSMLUG00000002503) #14	CSDC2 (ENSMLUG00000002495) #15	POLR3H (ENSMLUG00000002487) #16	ACO2 (ENSMLUG00000002472) #17	PHF5A (ENSMLUG00000002465) #18	TOB2 (ENSMLUG00000002462) #19	TEF (ENSMLUG00000002459) #20	ZC3H7B (ENSMLUG00000003292) #21	RANGAP1 (ENSMLUG00000008908) #22	CHADL (ENSMLUG00000008892) #23	L3MBTL2 (ENSMLUG00000008858) #24	EP300 (ENSMLUG00000014810) #25	ENSMLUG00000027424	ENSMLUG00000007815 #26	XPNPEP3 (ENSMLUG00000007787) #27	DNAJB7 (ENSMLUG00000007809) #28	ST13 (ENSMLUG00000007764) #29	SLC25A17 (ENSMLUG00000007749) #30	MCHR1 (ENSMLUG00000003571) #31	MRTFA (ENSMLUG00000005421) #32	SGSM3 (ENSMLUG00000005428) #33	ADSL (ENSMLUG00000005441) #34	ENSMLUG00000023638	TNRC6B (ENSMLUG00000008765) #35
Greater horseshoe bat	MODERN SPECIES	1	SHISA8 (ENSRFEG00010016301) #7	SREBF2 (ENSRFEG00010016385) #8	CCDC134 (ENSRFEG00010016458) #9	MEI1 (ENSRFEG00010016537) #10	SNU13 (ENSRFEG00010017169) #11	XRCC6 (ENSRFEG00010017302) #12	DESI1 (ENSRFEG00010017478) #13	PMM1 (ENSRFEG00010017564) #14	CSDC2 (ENSRFEG00010017619) #15	POLR3H (ENSRFEG00010017658) #16	ACO2 (ENSRFEG00010017740) #17	PHF5A (ENSRFEG00010018076) #18	TOB2 (ENSRFEG00010018126) #19	TEF (ENSRFEG00010018137) #20	ZC3H7B (ENSRFEG00010018168) #21	RANGAP1 (ENSRFEG00010018251) #22	CHADL (ENSRFEG00010018530) #23	L3MBTL2 (ENSRFEG00010018570) #24	EP300 (ENSRFEG00010018626) #25	ENSRFEG00010018938 #26	XPNPEP3 (ENSRFEG00010018976) #27	ENSRFEG00010000294 #29	SLC25A17 (ENSRFEG00010000386) #30	MCHR1 (ENSRFEG00010000490) #31	MRTFA (ENSRFEG00010000566) #32	SGSM3 (ENSRFEG00010000625) #33	ADSL (ENSRFEG00010000674) #34	TNRC6B (ENSRFEG00010000889) #35	FAM83F (ENSRFEG00010001186) #36	GRAP2 (ENSRFEG00010001214) #37	ENTHD1 (ENSRFEG00010001236)
Equus	ANCESTRAL SPECIES	21	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.z ##11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000168153	ENSGT00940000163470 #28	ENSGT00940000153657.A #27	ENSGT00390000001347.v #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Donkey	MODERN SPECIES	11	SHISA8 (ENSEASG00005001339) #7	SREBF2 (ENSEASG00005001390) #8	CCDC134 (ENSEASG00005001482) #9	MEI1 (ENSEASG00005001488) #10	ENSEASG00005035516	ENSEASG00005036377 ##11	XRCC6 (ENSEASG00005001514) #12	DESI1 (ENSEASG00005034212) #13	PMM1 (ENSEASG00005001528) #14	CSDC2 (ENSEASG00005031038) #15	POLR3H (ENSEASG00005001539) #16	ACO2 (ENSEASG00005001546) #17	TOB2 (ENSEASG00005031738) #19	TEF (ENSEASG00005001571) #20	ZC3H7B (ENSEASG00005001577) #21	RANGAP1 (ENSEASG00005001602) #22	CHADL (ENSEASG00005001659) #23	L3MBTL2 (ENSEASG00005001665) #24	EP300 (ENSEASG00005001674) #25	ENSEASG00005024494	XPNPEP3 (ENSEASG00005001716) #27	DNAJB7 (ENSEASG00005027112) #28	ST13 (ENSEASG00005001769) #29	SLC25A17 (ENSEASG00005001938) #30	ENSEASG00005001954	MCHR1 (ENSEASG00005001962) #31	MRTFA (ENSEASG00005002011) #32	SGSM3 (ENSEASG00005002165) #33	ADSL (ENSEASG00005002850) #34	TNRC6B (ENSEASG00005005306) #35	FAM83F (ENSEASG00005005338) #36
Horse	MODERN SPECIES	20	SREBF2 (ENSECAG00000024608) #8	CCDC134 (ENSECAG00000020771) #9	MEI1 (ENSECAG00000000597) #10	ENSECAG00000055209	SNU13 (ENSECAG00000000375) ##11	XRCC6 (ENSECAG00000017563) #12	DESI1 (ENSECAG00000011960) #13	PMM1 (ENSECAG00000000302) #14	CSDC2 (ENSECAG00000022234) #15	POLR3H (ENSECAG00000019715) #16	PHF5A (ENSECAG00000023225) #18	ACO2 (ENSECAG00000023762) #17	TOB2 (ENSECAG00000001192) #19	TEF (ENSECAG00000018137) #20	ZC3H7B (ENSECAG00000010103) #21	RANGAP1 (ENSECAG00000024092) #22	CHADL (ENSECAG00000023119) #23	L3MBTL2 (ENSECAG00000010476) #24	EP300 (ENSECAG00000009327) #25	RBX1 (ENSECAG00000021493)	DNAJB7 (ENSECAG00000050931) #28	XPNPEP3 (ENSECAG00000018457) #27	ST13 (ENSECAG00000015838) #29	SLC25A17 (ENSECAG00000008907) #30	ENSECAG00000000999	MCHR1 (ENSECAG00000006511) #31	MRTFA (ENSECAG00000013950) #32	SGSM3 (ENSECAG00000022296) #33	TNRC6B (ENSECAG00000009759) #35	FAM83F (ENSECAG00000009129) #36	GRAP2 (ENSECAG00000019768) #37
Carnivora	ANCESTRAL SPECIES	3	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00940000163470 #28	ENSGT00390000001347.v #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Caniformia	ANCESTRAL SPECIES	20	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00940000163470 #28	ENSGT00390000001347.v #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Caniformia_b	ANCESTRAL SPECIES	18	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00940000163470 #28	ENSGT00390000001347.v #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Ursidae	ANCESTRAL SPECIES	13	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00940000163470 #28	ENSGT00390000001347.v #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Ursus	ANCESTRAL SPECIES	64	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00940000163470 #28	ENSGT00390000001347.v #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31
Polar bear	MODERN SPECIES	248	CENPM (ENSUMAG00000020662)	SREBF2 (ENSUMAG00000020699) #8	CCDC134 (ENSUMAG00000020966) #9	MEI1 (ENSUMAG00000020981) #10	ENSUMAG00000020998	SNU13 (ENSUMAG00000021000) #11	XRCC6 (ENSUMAG00000021004) #12	DESI1 (ENSUMAG00000021006) #13	PMM1 (ENSUMAG00000021010) #14	CSDC2 (ENSUMAG00000021015) #15	POLR3H (ENSUMAG00000021018) #16	ACO2 (ENSUMAG00000021024) #17	PHF5A (ENSUMAG00000021030) #18	TEF (ENSUMAG00000021034) #20	ZC3H7B (ENSUMAG00000021049) #21	RANGAP1 (ENSUMAG00000021110) #22	L3MBTL2 (ENSUMAG00000021117) #24	EP300 (ENSUMAG00000021277) #25	RBX1 (ENSUMAG00000021734) #26	XPNPEP3 (ENSUMAG00000021746) #27	DNAJB7 (ENSUMAG00000021748) #28	ST13 (ENSUMAG00000021749) #29	SLC25A17 (ENSUMAG00000021756) #30	MCHR1 (ENSUMAG00000021761) #31
American black bear	MODERN SPECIES	742																RANGAP1 (ENSUAMG00000024459) #22	CHADL (ENSUAMG00000024456) #23	L3MBTL2 (ENSUAMG00000024453) #24	EP300 (ENSUAMG00000023761) #25	RBX1 (ENSUAMG00000023721) #26
Giant Panda	MODERN SPECIES	6	CCDC134 (ENSAMEG00000015542) #9	ENSAMEG00000027124	MEI1 (ENSAMEG00000015554) #10	ENSAMEG00000030983	SNU13 (ENSAMEG00000015574) #11	XRCC6 (ENSAMEG00000015579) #12	DESI1 (ENSAMEG00000015602) #13	PMM1 (ENSAMEG00000015609) #14	CSDC2 (ENSAMEG00000015626) #15	POLR3H (ENSAMEG00000015630) #16	ACO2 (ENSAMEG00000015641) #17	PHF5A (ENSAMEG00000015687) #18	TOB2 (ENSAMEG00000018561) #19	TEF (ENSAMEG00000027518) #20	ZC3H7B (ENSAMEG00000002171) #21	RANGAP1 (ENSAMEG00000014068) #22	CHADL (ENSAMEG00000014053) #23	L3MBTL2 (ENSAMEG00000014010) #24	ENSAMEG00000031394	EP300 (ENSAMEG00000013940) #25	ENSAMEG00000024588	DNAJB7 (ENSAMEG00000019443) #28	ST13 (ENSAMEG00000013880) #29	SLC25A17 (ENSAMEG00000013867) #30	MCHR1 (ENSAMEG00000013865) #31	MRTFA (ENSAMEG00000011151) #32	SGSM3 (ENSAMEG00000011110) #33	ADSL (ENSAMEG00000011062) #34	TNRC6B (ENSAMEG00000011025) #35	ENSAMEG00000026240 #36	ENSAMEG00000011020 #36
Mustelinae	ANCESTRAL SPECIES	4	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00940000163470 #28	ENSGT00390000001347.v #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
American mink	MODERN SPECIES	105	SREBF2 (ENSNVIG00000022327) #8	CC134 (ENSNVIG00000022338) #9	MEI1 (ENSNVIG00000022357) #10	ENSNVIG00000000049	SNU13 (ENSNVIG00000000081) #11	XRCC6 (ENSNVIG00000000144) #12	DESI1 (ENSNVIG00000000338) #13	PMM1 (ENSNVIG00000000343) #14	CSDC2 (ENSNVIG00000000351) #15	RPC8 (ENSNVIG00000000359) #16	ACO2 (ENSNVIG00000000421) #17	PHF5A (ENSNVIG00000000451) #18	TOB2 (ENSNVIG00000000471) #19	TEF (ENSNVIG00000000478) #20	ZC3H7B (ENSNVIG00000000487) #21	RANGAP1 (ENSNVIG00000000510) #22	CHADL (ENSNVIG00000000532) #23	L3MBTL2 (ENSNVIG00000000543) #24	EP300 (ENSNVIG00000000593) #25	RBX1 (ENSNVIG00000000637) #26	XPNPEP3 (ENSNVIG00000000649) #27	DNAJB7 (ENSNVIG00000000663) #28	SLC25A17 (ENSNVIG00000000669) #30	MCHR1 (ENSNVIG00000000746) #31	ENSNVIG00000000774 #32	ENSNVIG00000000800 #32	SGSM3 (ENSNVIG00000000810) #33	ADSL (ENSNVIG00000000889) #34	TNRC6B (ENSNVIG00000000926) #35	FAM83F (ENSNVIG00000001092) #36	ENSNVIG00000001106
Ferret	MODERN SPECIES	324	ENSMPUG00000016377 #7	CCDC134 (ENSMPUG00000016378) #9	MEI1 (ENSMPUG00000016379) #10	ENSMPUG00000016380	XRCC6 (ENSMPUG00000016382) #12	SNU13 (ENSMPUG00000016384) #11	DESI1 (ENSMPUG00000016385) #13	PMM1 (ENSMPUG00000016390) #14	CSDC2 (ENSMPUG00000016392) #15	POLR3H (ENSMPUG00000016395) #16	ACO2 (ENSMPUG00000016396) #17	PHF5A (ENSMPUG00000016398) #18	TOB2 (ENSMPUG00000019594) #19	TEF (ENSMPUG00000016407) #20	ZC3H7B (ENSMPUG00000016409) #21	RANGAP1 (ENSMPUG00000016411) #22	ENSMPUG00000016414	CHADL (ENSMPUG00000016416) #23	L3MBTL2 (ENSMPUG00000016425) #24	EP300 (ENSMPUG00000016427) #25	RBX1 (ENSMPUG00000016430) #26	XPNPEP3 (ENSMPUG00000016431) #27	DNAJB7 (ENSMPUG00000019596) #28	ST13 (ENSMPUG00000016432) #29	SLC25A17 (ENSMPUG00000016436) #30	MCHR1 (ENSMPUG00000016437) #31	MRTFA (ENSMPUG00000016438) #32	SGSM3 (ENSMPUG00000016439) #33	ADSL (ENSMPUG00000016441) #34	TNRC6B (ENSMPUG00000016442) #35
Canidae	ANCESTRAL SPECIES	10	ENSGT00940000157339.j #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.v #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37	ENSGT00990000207858
Canis_lupus	ANCESTRAL SPECIES	9	ENSGT00940000157339.j #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.v.c.a #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00950000182802.B.a.a.a.a.i.d.d.a	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Dingo	MODERN SPECIES	307	CCDC134 (ENSCAFG00020001443) #9	MEI1 (ENSCAFG00020001461) #10	ENSCAFG00020001537	ENSCAFG00020001539 #11	XRCC6 (ENSCAFG00020001627) #12	DESI1 (ENSCAFG00020001937) #13	ENSCAFG00020001943	PMM1 (ENSCAFG00020001948) #14	CSDC2 (ENSCAFG00020001951) #15	POLR3H (ENSCAFG00020001964) #16	ACO2 (ENSCAFG00020001976) #17	PHF5A (ENSCAFG00020001984) #18	TOB2 (ENSCAFG00020001990) #19	TEF (ENSCAFG00020001995) #20	ZC3H7B (ENSCAFG00020002005) #21	RANGAP1 (ENSCAFG00020002019) #22	CHADL (ENSCAFG00020002027) #23	L3MBTL2 (ENSCAFG00020002034) #24	ENSCAFG00020002042 #25	ENSCAFG00020002075 #25	RBX1 (ENSCAFG00020002079) #26	XPNPEP3 (ENSCAFG00020002086) #27	ENSCAFG00020002103 #28	SLC25A17 (ENSCAFG00020002111) #30	MCHR1 (ENSCAFG00020002114) #31	MRTFA (ENSCAFG00020002129) #32	SGSM3 (ENSCAFG00020002141) #33	ADSL (ENSCAFG00020002150) #34	TNRC6B (ENSCAFG00020002189) #35	ENSCAFG00020002329	FAM83F (ENSCAFG00020002339) #36
Dog	MODERN SPECIES	1	SREBF2 (ENSCAFG00845015666) #8	CCDC134 (ENSCAFG00845015779) #9	MEI1 (ENSCAFG00845015865) #10	ENSCAFG00845016016	SNU13 (ENSCAFG00845016061) #11	XRCC6 (ENSCAFG00845016282) #12	ENSCAFG00845016514 #13	PMM1 (ENSCAFG00845016625) #14	CSDC2 (ENSCAFG00845016721) #15	POLR3H (ENSCAFG00845016808) #16	ACO2 (ENSCAFG00845016969) #17	PHF5A (ENSCAFG00845017076) #18	TOB2 (ENSCAFG00845017159) #19	TEF (ENSCAFG00845017239) #20	ZC3H7B (ENSCAFG00845017344) #21	RANGAP1 (ENSCAFG00845017556) #22	L3MBTL2 (ENSCAFG00845017974) #24	EP300 (ENSCAFG00845018383) #25	RBX1 (ENSCAFG00845019033) #26	XPNPEP3 (ENSCAFG00845019212) #27	ST13 (ENSCAFG00845019349) #29	SLC25A17 (ENSCAFG00845019500) #30	MDH2 (ENSCAFG00845019601)	MCHR1 (ENSCAFG00845019660) #31	MRTFA (ENSCAFG00845019751) #32	SGSM3 (ENSCAFG00845020097) #33	ADSL (ENSCAFG00845020328) #34	TNRC6B (ENSCAFG00845020617) #35	ENSCAFG00845020976	FAM83F (ENSCAFG00845021004) #36	GRAP2 (ENSCAFG00845021051) #37
Red fox	MODERN SPECIES	134	SREBF2 (ENSVVUG00000003079) #8	CCDC134 (ENSVVUG00000003274) #9	MEI1 (ENSVVUG00000003315) #10	ENSVVUG00000003422	ENSVVUG00000003430 #11	ENSVVUG00000003442 #12	DESI1 (ENSVVUG00000003501) #13	PMM1 (ENSVVUG00000003525) #14	CSDC2 (ENSVVUG00000003532) #15	POLR3H (ENSVVUG00000003543) #16	ACO2 (ENSVVUG00000003619) #17	PHF5A (ENSVVUG00000003634) #18	TOB2 (ENSVVUG00000003649) #19	TEF (ENSVVUG00000003655) #20	ZC3H7B (ENSVVUG00000003660) #21	RANGAP1 (ENSVVUG00000003690) #22	CHADL (ENSVVUG00000003700) #23	L3MBTL2 (ENSVVUG00000003709) #24	EP300 (ENSVVUG00000003883) #25	RBX1 (ENSVVUG00000006879) #26	XPNPEP3 (ENSVVUG00000006901) #27	ENSVVUG00000006910 #28	ENSVVUG00000006921 #30	MCHR1 (ENSVVUG00000006978) #31	MRTFA (ENSVVUG00000006989) #32	SGSM3 (ENSVVUG00000007031) #33	ADSL (ENSVVUG00000007041) #34	TNRC6B (ENSVVUG00000007064) #35	GRAP2 (ENSVVUG00000007218) #37	ENSVVUG00000007232	ENTHD1 (ENSVVUG00000007235)
Felidae	ANCESTRAL SPECIES	2	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00390000016988.a.a.a.b.a.b.a.b	ENSGT00940000153657.A #27	ENSGT00940000163470 #28	ENSGT00390000001347.v.b.a #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36
Panthera	ANCESTRAL SPECIES		ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00390000016988.a.a.a.b.a.b.a.b	ENSGT00940000153657.A #27	ENSGT00940000163470 #28	ENSGT00390000001347.v.b.a #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36
Tiger	MODERN SPECIES	130	SREBF2 (ENSPTIG00000006504) #8	CCDC134 (ENSPTIG00000003009) #9	MEI1 (ENSPTIG00000021687) #10	ENSPTIG00000021403	SNU13 (ENSPTIG00000021078) #11	DESI1 (ENSPTIG00000020182) #13	XRCC6 (ENSPTIG00000019026) #12	PMM1 (ENSPTIG00000018216) #14	CSDC2 (ENSPTIG00000017894) #15	POLR3H (ENSPTIG00000016286) #16	ACO2 (ENSPTIG00000014744) #17	PHF5A (ENSPTIG00000014228) #18	TOB2 (ENSPTIG00000004228) #19	TEF (ENSPTIG00000013705) #20	ZC3H7B (ENSPTIG00000013113) #21	RANGAP1 (ENSPTIG00000012387) #22	L3MBTL2 (ENSPTIG00000010861) #24	EP300 (ENSPTIG00000021151) #25	RBX1 (ENSPTIG00000020939) #26	ENSPTIG00000003092	XPNPEP3 (ENSPTIG00000018765) #27	ST13 (ENSPTIG00000015971) #29	SLC25A17 (ENSPTIG00000013463) #30	MCHR1 (ENSPTIG00000012057) #31	ENSPTIG00000010561 #32	SGSM3 (ENSPTIG00000009612) #33	ADSL (ENSPTIG00000007894) #34	TNRC6B (ENSPTIG00000022064) #35	FAM83F (ENSPTIG00000021999) #36	GRAP2 (ENSPTIG00000021945) #37	ENTHD1 (ENSPTIG00000021807)
Panthera_a	ANCESTRAL SPECIES	12	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00390000016988.a.a.a.b.a.b.a.b	ENSGT00940000153657.A #27	ENSGT00940000163470 #28	ENSGT00390000001347.v.b.a #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36
leopard	MODERN SPECIES	13	ENSPPRG00000003373	MEI1 (ENSPPRG00000003624) #10	ENSPPRG00000003751	SNU13 (ENSPPRG00000004114) #11	XRCC6 (ENSPPRG00000004390) #12	DESI1 (ENSPPRG00000004562) #13	PMM1 (ENSPPRG00000004746) #14	CSDC2 (ENSPPRG00000005049) #15	POLR3H (ENSPPRG00000005361) #16	ACO2 (ENSPPRG00000005996) #17	PHF5A (ENSPPRG00000006194) #18	TOB2 (ENSPPRG00000021427) #19	ENSPPRG00000006258	TEF (ENSPPRG00000006357) #20	ZC3H7B (ENSPPRG00000006647) #21	RANGAP1 (ENSPPRG00000007346) #22	CHADL (ENSPPRG00000007361) #23	L3MBTL2 (ENSPPRG00000007633) #24	EP300 (ENSPPRG00000009984) #25	RBX1 (ENSPPRG00000010370) #26	ENSPPRG00000021477	XPNPEP3 (ENSPPRG00000010490) #27	ST13 (ENSPPRG00000010932) #29	SLC25A17 (ENSPPRG00000011948) #30	MCHR1 (ENSPPRG00000012224) #31	ENSPPRG00000013444 #32	SGSM3 (ENSPPRG00000013743) #33	ADSL (ENSPPRG00000014761) #34	TNRC6B (ENSPPRG00000017741) #35	FAM83F (ENSPPRG00000021618) #36	GRAP2 (ENSPPRG00000021941) #37
lion	MODERN SPECIES	7	SREBF2 (ENSPLOG00000013979) #8	CCDC134 (ENSPLOG00000013853) #9	MEI1 (ENSPLOG00000013509) #10	ENSPLOG00000013474	ENSPLOG00000013318 #11	XRCC6 (ENSPLOG00000013139) #12	DESI1 (ENSPLOG00000013041) #13	PMM1 (ENSPLOG00000012988) #14	CSDC2 (ENSPLOG00000012880) #15	POLR3H (ENSPLOG00000012763) #16	ACO2 (ENSPLOG00000012601) #17	PHF5A (ENSPLOG00000012553) #18	TOB2 (ENSPLOG00000012540) #19	TEF (ENSPLOG00000012484) #20	ZC3H7B (ENSPLOG00000012165) #21	RANGAP1 (ENSPLOG00000012100) #22	CHADL (ENSPLOG00000012009) #23	L3MBTL2 (ENSPLOG00000011847) #24	EP300 (ENSPLOG00000011519) #25	RBX1 (ENSPLOG00000011457) #26	ENSPLOG00000011428	ENSPLOG00000011391	ENSPLOG00000011365 #28	XPNPEP3 (ENSPLOG00000011320) #27	ENSPLOG00000011208 #29	SLC25A17 (ENSPLOG00000010995) #30	MCHR1 (ENSPLOG00000010815) #31	ENSPLOG00000005209 #32	SGSM3 (ENSPLOG00000005149) #33	ADSL (ENSPLOG00000005019) #34	TNRC6B (ENSPLOG00000004859) #35
Cat	MODERN SPECIES	238	SREBF2 (ENSFCAG00000014289) #8	CCDC134 (ENSFCAG00000037479) #9	MEI1 (ENSFCAG00000014285) #10	ENSFCAG00000025013	SNU13 (ENSFCAG00000027664) #11	XRCC6 (ENSFCAG00000018784) #12	DESI1 (ENSFCAG00000033281) #13	PMM1 (ENSFCAG00000006685) #14	CSDC2 (ENSFCAG00000038283) #15	POLR3H (ENSFCAG00000006684) #16	ACO2 (ENSFCAG00000018526) #17	PHF5A (ENSFCAG00000003676) #18	TOB2 (ENSFCAG00000003675) #19	TEF (ENSFCAG00000032491) #20	ZC3H7B (ENSFCAG00000003670) #21	RANGAP1 (ENSFCAG00000003669) #22	CHADL (ENSFCAG00000042374) #23	L3MBTL2 (ENSFCAG00000003668) #24	ENSFCAG00000026993	EP300 (ENSFCAG00000005002) #25	RBX1 (ENSFCAG00000032024) #26	ENSFCAG00000035664	DNAJB7 (ENSFCAG00000015442) #28	XPNPEP3 (ENSFCAG00000040722) #27	ST13 (ENSFCAG00000027002) #29	SLC25A17 (ENSFCAG00000015440) #30	MCHR1 (ENSFCAG00000015439) #31	MRTFA (ENSFCAG00000004802) #32	SGSM3 (ENSFCAG00000004800) #33	ADSL (ENSFCAG00000004798) #34	TNRC6B (ENSFCAG00000004791) #35
Atlantogenata	ANCESTRAL SPECIES	36	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.z ##11	ENSGT00550000074840.y.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000168153	ENSGT00940000153657.A #27	ENSGT00940000163470 #28	ENSGT00390000001347 #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36
Xenarthra	ANCESTRAL SPECIES	81	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.y.a ##11	ENSGT00550000074840.y.b #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000153840.a.b #24	ENSGT00940000168153	ENSGT00940000153657.A #27	ENSGT00940000163470 #28	ENSGT00390000001347 #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31
Sloth	MODERN SPECIES	276																ENSCHOG00000008226 #22
Armadillo	MODERN SPECIES	4707	SREBF2 (ENSDNOG00000048031) #8	CCDC134 (ENSDNOG00000001589) #9	MEI1 (ENSDNOG00000001581) #10	ENSDNOG00000032337	ENSDNOG00000044768 ##11	XRCC6 (ENSDNOG00000018356) #12	DESI1 (ENSDNOG00000040575) #13	PMM1 (ENSDNOG00000036218) #14	CSDC2 (ENSDNOG00000013639) #15	POLR3H (ENSDNOG00000025527) #16	ACO2 (ENSDNOG00000018156) #17	PHF5A (ENSDNOG00000034362) #18	TOB2 (ENSDNOG00000016431) #19	TEF (ENSDNOG00000035257) #20	ZC3H7B (ENSDNOG00000007676) #21	ENSDNOG00000006672 #22	L3MBTL2 (ENSDNOG00000032804) #24	ENSDNOG00000007595	XPNPEP3 (ENSDNOG00000046084) #27	DNAJB7 (ENSDNOG00000040305) #28	ENSDNOG00000046244 #29	SLC25A17 (ENSDNOG00000013240) #30	MCHR1 (ENSDNOG00000031210) #31	DSC1 (ENSDNOG00000010752)	DSG1 (ENSDNOG00000019391)	DSG4 (ENSDNOG00000009671)
Afrotheria	ANCESTRAL SPECIES	33	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.z ##11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00940000163470 #28	ENSGT00390000001347 #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Tenrec	MODERN SPECIES	315																ENSETEG00000003441 #22
Afrotheria_a	ANCESTRAL SPECIES	33	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00900000141218	ENSGT00550000074840.z ##11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00940000163470 #28	ENSGT00390000001347 #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Elephant	MODERN SPECIES	544	CCDC134 (ENSLAFG00000021498) #9	ENSLAFG00000011030 #10	ENSLAFG00000027253	ENSLAFG00000020576	SNU13 (ENSLAFG00000011026) ##11	ENSLAFG00000011017 #12	DESI1 (ENSLAFG00000029375) #13	PMM1 (ENSLAFG00000002396) #14	CSDC2 (ENSLAFG00000027155) #15	POLR3H (ENSLAFG00000006033) #16	ACO2 (ENSLAFG00000006030) #17	PHF5A (ENSLAFG00000028840) #18	TOB2 (ENSLAFG00000027484) #19	TEF (ENSLAFG00000013151) #20	ZC3H7B (ENSLAFG00000013268) #21	RANGAP1 (ENSLAFG00000000314) #22	CHADL (ENSLAFG00000030376) #23	L3MBTL2 (ENSLAFG00000012307) #24	EP300 (ENSLAFG00000012289) #25	RBX1 (ENSLAFG00000008795) #26	XPNPEP3 (ENSLAFG00000007310) #27	DNAJB7 (ENSLAFG00000007309) #28	ST13 (ENSLAFG00000007303) #29	SLC25A17 (ENSLAFG00000011500) #30	MCHR1 (ENSLAFG00000003353) #31	MRTFA (ENSLAFG00000030989) #32	SGSM3 (ENSLAFG00000001295) #33	ADSL (ENSLAFG00000014483) #34	TNRC6B (ENSLAFG00000014473) #35	FAM83F (ENSLAFG00000016675) #36	GRAP2 (ENSLAFG00000006957) #37
Hyrax	MODERN SPECIES	234																RANGAP1 (ENSPCAG00000015970) #22
Marsupialia	ANCESTRAL SPECIES	11	ENSGT00940000163233 #7	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840 #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.s #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37	ENSGT00940000161730
Marsupialia_b	ANCESTRAL SPECIES	13	ENSGT00940000163233 #7	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840 #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b.a #23	ENSGT00940000154464.b.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.s #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Diprotodontia	ANCESTRAL SPECIES	8	ENSGT00940000163233 #7	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840 #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b.m #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b.a #23	ENSGT00940000154464.b.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.s #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Diprotodontia_a	ANCESTRAL SPECIES	8	ENSGT00940000163233 #7	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840 #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b.m #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b.a #23	ENSGT00940000154464.b.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.s #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Common wonbat	MODERN SPECIES	135	CENPM (ENSVURG00010001417)	SREBF2 (ENSVURG00010001443) #8	CCDC134 (ENSVURG00010001519) #9	MEI1 (ENSVURG00010001558) #10	ENSVURG00010001607 #11	XRCC6 (ENSVURG00010001619) #12	DESI1 (ENSVURG00010001632) #13	ENSVURG00010001642 #14	CSDC2 (ENSVURG00010001672) #15	POLR3H (ENSVURG00010001680) #16	ACO2 (ENSVURG00010001726) #17	PHF5A (ENSVURG00010001740) #18	TOB2 (ENSVURG00010001752) #19	TEF (ENSVURG00010001759) #20	ZC3H7B (ENSVURG00010001772) #21	RANGAP1 (ENSVURG00010001814) #22	ENSVURG00010001895 #23	ENSVURG00010001987 #23	L3MBTL2 (ENSVURG00010001993) #24	EP300 (ENSVURG00010002025) #25	RBX1 (ENSVURG00010002126) #26	XPNPEP3 (ENSVURG00010002164) #27	ENSVURG00010002387 #29	SLC25A17 (ENSVURG00010002406) #30	MCHR1 (ENSVURG00010002417) #31	MRTFA (ENSVURG00010002430) #32	SGSM3 (ENSVURG00010002459) #33	ADSL (ENSVURG00010002523) #34	TNRC6B (ENSVURG00010002621) #35	FAM83F (ENSVURG00010002796) #36	GRAP2 (ENSVURG00010002813) #37
koala	MODERN SPECIES	13	SREBF2 (ENSPCIG00000026401) #8	CCDC134 (ENSPCIG00000026402) #9	MEI1 (ENSPCIG00000026405) #10	ENSPCIG00000026407	SNU13 (ENSPCIG00000026408) #11	XRCC6 (ENSPCIG00000026409) #12	DESI1 (ENSPCIG00000026410) #13	PMM1 (ENSPCIG00000026411) #14	CSDC2 (ENSPCIG00000033418) #15	POLR3H (ENSPCIG00000026413) #16	ACO2 (ENSPCIG00000026414) #17	PHF5A (ENSPCIG00000031450) #18	TOB2 (ENSPCIG00000026533) #19	TEF (ENSPCIG00000026531) #20	ZC3H7B (ENSPCIG00000026417) #21	RANGAP1 (ENSPCIG00000026423) #22	ENSPCIG00000036708 #23	ENSPCIG00000026427 #23	L3MBTL2 (ENSPCIG00000026428) #24	ENSPCIG00000036488	EP300 (ENSPCIG00000026468) #25	RBX1 (ENSPCIG00000030999) #26	XPNPEP3 (ENSPCIG00000027562) #27	ENSPCIG00000027564 #29	SLC25A17 (ENSPCIG00000027567) #30	MCHR1 (ENSPCIG00000033822) #31	ENSPCIG00000035658	MRTFA (ENSPCIG00000020323) #32	SGSM3 (ENSPCIG00000020329) #33	ADSL (ENSPCIG00000020341) #34	ENSPCIG00000020347 #35
Wallaby	MODERN SPECIES	931																RANGAP1 (ENSMEUG00000001941) #22	ENSMEUG00000001928 #23	ENSMEUG00000001923 #23
Tasmanian devil	MODERN SPECIES	4	SHISA8 (ENSSHAG00000032342) #7	SREBF2 (ENSSHAG00000011682) #8	ENSSHAG00000024514 #9	MEI1 (ENSSHAG00000011079) #10	ENSSHAG00000024404	XRCC6 (ENSSHAG00000010790) #12	DESI1 (ENSSHAG00000029515) #13	PMM1 (ENSSHAG00000025713) #14	CSDC2 (ENSSHAG00000029872) #15	POLR3H (ENSSHAG00000010196) #16	ACO2 (ENSSHAG00000010092) #17	PHF5A (ENSSHAG00000025116) #18	TOB2 (ENSSHAG00000030650) #19	TEF (ENSSHAG00000020958) #20	ZC3H7B (ENSSHAG00000008653) #21	RANGAP1 (ENSSHAG00000008179) #22	ENSSHAG00000008085 #23	ENSSHAG00000007840 #23	L3MBTL2 (ENSSHAG00000025122) #24	EP300 (ENSSHAG00000006684) #25	ENSSHAG00000024914 #26	XPNPEP3 (ENSSHAG00000003507) #27	ENSSHAG00000000319 #29	SLC25A17 (ENSSHAG00000030380) #30	MCHR1 (ENSSHAG00000002986) #31	MRTFA (ENSSHAG00000024452) #32	SGSM3 (ENSSHAG00000025628) #33	ADSL (ENSSHAG00000009366) #34	TNRC6B (ENSSHAG00000009692) #35	FAM83F (ENSSHAG00000011148) #36	GRAP2 (ENSSHAG00000028881) #37
Opossum	MODERN SPECIES	7	ENSMODG00000007410	TTC38 (ENSMODG00000007396)	CDPF1 (ENSMODG00000024113)	PPARA (ENSMODG00000007365)	ENSMODG00000024114	ENSMODG00000007333	WNT7B (ENSMODG00000007327)	ENSMODG00000007304	FBLN1 (ENSMODG00000007284)	RIBC2 (ENSMODG00000007265)	SMC1B (ENSMODG00000007253)	ENSMODG00000007167	UPK3A (ENSMODG00000007145)	ENSMODG00000048389	NUP50 (ENSMODG00000007116)	RANGAP1 (ENSMODG00000013097) #22	ENSMODG00000028924	L3MBTL2 (ENSMODG00000013083) #24	EP300 (ENSMODG00000013073) #25	ENSMODG00000013054	XPNPEP3 (ENSMODG00000013052) #27	ENSMODG00000013042 #29	SLC25A17 (ENSMODG00000013036) #30	MCHR1 (ENSMODG00000045226) #31	ENSMODG00000012937 #32	ADSL (ENSMODG00000012930) #34	ENSMODG00000048400	ENSMODG00000012885	ENSMODG00000038819	CNTN1 (ENSMODG00000012850)	PKP2 (ENSMODG00000012782)
Platypus	MODERN SPECIES	5	ENSOANG00000004529 #7	SREBF2 (ENSOANG00000002461) #8	ENSOANG00000042179 #9	MEI1 (ENSOANG00000004117) #10	SNU13 (ENSOANG00000011327) #11	XRCC6 (ENSOANG00000011328) #12	DESI1 (ENSOANG00000044638) #13	PMM1 (ENSOANG00000050238) #14	CSDC2 (ENSOANG00000004309) #15	POLR3H (ENSOANG00000004374) #16	ACO2 (ENSOANG00000003550) #17	PHF5A (ENSOANG00000044295) #18	ENSOANG00000009031 #19	TEF (ENSOANG00000011535) #20	ZC3H7B (ENSOANG00000008962) #21	RANGAP1 (ENSOANG00000013941) #22	CHADL (ENSOANG00000036728) #23	L3MBTL2 (ENSOANG00000013943) #24	EP300 (ENSOANG00000014679) #25	RBX1 (ENSOANG00000014675) #26	XPNPEP3 (ENSOANG00000014678) #27	ST13 (ENSOANG00000014676) #29	SLC25A17 (ENSOANG00000049591) #30	MCHR1 (ENSOANG00000014672) #31	MRTFA (ENSOANG00000044653) #32	ENSOANG00000013468 ##32	SGSM3 (ENSOANG00000008380) #33	ADSL (ENSOANG00000014669) #34	TNRC6B (ENSOANG00000014668) #35	ENSOANG00000050214 #36	GRAP2 (ENSOANG00000014667) #37
Sauria	ANCESTRAL SPECIES	4	ENSGT00940000154485.A	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840 #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.r #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00950000182979.a.b.a ##32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000179237	ENSGT00940000155813 #35	ENSGT00940000160998 #36
Archelosauria	ANCESTRAL SPECIES	3	ENSGT00940000163663.A	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840 #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.r #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000179237	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Cryptodira	ANCESTRAL SPECIES	10	ENSGT00940000163663.A	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840 #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000161826.C	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.r #29	ENSGT00920000149129 #30	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37	ENSGT00940000161730
Testudinoidea	ANCESTRAL SPECIES	4	ENSGT00940000163663.A	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840 #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000161826.C	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.r #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37
Testudinidae	ANCESTRAL SPECIES	14	ENSGT00940000163663.A	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840 #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000161826.C	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.r #29	ENSGT00920000149129 #30	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37	ENSGT00940000161730
Abingdon island giant tortoise	MODERN SPECIES	88	ENSCABG00000022866	SREBF2 (ENSCABG00000022872) #8	CCDC134 (ENSCABG00000022880) #9	ENSCABG00000022882 #10	SNU13 (ENSCABG00000022883) #11	XRCC6 (ENSCABG00000022888) #12	DESI1 (ENSCABG00000022890) #13	PMM1 (ENSCABG00000022891) #14	CSDC2 (ENSCABG00000022893) #15	POLR3H (ENSCABG00000022894) #16	ACO2 (ENSCABG00000022897) #17	PHF5A (ENSCABG00000022898) #18	TOB2 (ENSCABG00000022899) #19	TEF (ENSCABG00000022900) #20	ZC3H7B (ENSCABG00000022901) #21	RANGAP1 (ENSCABG00000022902) #22	ENSCABG00000022903	CHADL (ENSCABG00000022905) #23	L3MBTL2 (ENSCABG00000022907) #24	EP300 (ENSCABG00000022920) #25	RBX1 (ENSCABG00000022939) #26	XPNPEP3 (ENSCABG00000022941) #27	ENSCABG00000022946 #29	SLC25A17 (ENSCABG00000022953) #30	ENSCABG00000022954 #32	ENSCABG00000022955 #32	SGSM3 (ENSCABG00000022956) #33	ENSCABG00000022958	ADSL (ENSCABG00000022959) #34	TNRC6B (ENSCABG00000022960) #35	FAM83F (ENSCABG00000022961) #36
Goode s thornscrub tortoise	MODERN SPECIES		SREBF2 (ENSGEVG00005000095) #8	CCDC134 (ENSGEVG00005000051) #9	ENSGEVG00005000036 #10	SNU13 (ENSGEVG00005000024) #11	DESI1 (ENSGEVG00005002450) #13	XRCC6 (ENSGEVG00005002426) #12	PMM1 (ENSGEVG00005002400) #14	CSDC2 (ENSGEVG00005002384) #15	POLR3H (ENSGEVG00005002371) #16	ACO2 (ENSGEVG00005002343) #17	PHF5A (ENSGEVG00005002334) #18	TOB2 (ENSGEVG00005002327) #19	ENSGEVG00005002321	TEF (ENSGEVG00005002306) #20	ZC3H7B (ENSGEVG00005002265) #21	RANGAP1 (ENSGEVG00005002246) #22	ENSGEVG00005002229	CHADL (ENSGEVG00005002219) #23	L3MBTL2 (ENSGEVG00005002180) #24	EP300 (ENSGEVG00005002140) #25	RBX1 (ENSGEVG00005002125) #26	XPNPEP3 (ENSGEVG00005002096) #27	ENSGEVG00005002059 #29	SLC25A17 (ENSGEVG00005002031) #30	MRTFA (ENSGEVG00005002013) #32	SGSM3 (ENSGEVG00005001983) #33	ADSL (ENSGEVG00005001950) #34	TNRC6B (ENSGEVG00005001864) #35	FAM83F (ENSGEVG00005001832) #36	GRAP2 (ENSGEVG00005001821) #37	ENSGEVG00005001812
Emydidae	ANCESTRAL SPECIES	5	ENSGT00940000163663.A	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840 #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.r #29	ENSGT00920000149129 #30	ENSGT00940000154272.B #31	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37	ENSGT00940000161730
painted turtle	MODERN SPECIES	2381	CENPM (ENSCPBG00000020523)	ENSCPBG00000020525	ENSCPBG00000020528	SREBF2 (ENSCPBG00000020529) #8	CCDC134 (ENSCPBG00000020531) #9	SNU13 (ENSCPBG00000020533) #11	XRCC6 (ENSCPBG00000020535) #12	DESI1 (ENSCPBG00000020538) #13	CSDC2 (ENSCPBG00000020542) #15	PMM1 (ENSCPBG00000020543) #14	POLR3H (ENSCPBG00000020544) #16	ACO2 (ENSCPBG00000020545) #17	PHF5A (ENSCPBG00000020547) #18	TEF (ENSCPBG00000020555) #20	ZC3H7B (ENSCPBG00000020560) #21	RANGAP1 (ENSCPBG00000020589) #22	ENSCPBG00000021162	L3MBTL2 (ENSCPBG00000021168) #24	CHADL (ENSCPBG00000021171) #23	EP300 (ENSCPBG00000021241) #25	RBX1 (ENSCPBG00000022886) #26	XPNPEP3 (ENSCPBG00000022890) #27	ENSCPBG00000022896 #29	MRTFA (ENSCPBG00000022902) #32	MCHR1 (ENSCPBG00000022916) #31	SGSM3 (ENSCPBG00000022918) #33	ADSL (ENSCPBG00000022923) #34	TNRC6B (ENSCPBG00000022932) #35	ENSCPBG00000022940	FAM83F (ENSCPBG00000022941) #36	GRAP2 (ENSCPBG00000022944) #37
Three-toed box turtle	MODERN SPECIES	118	SREBF2 (ENSTMTG00000008314) #8	CCDC134 (ENSTMTG00000008350) #9	MEI1 (ENSTMTG00000008364) #10	SNU13 (ENSTMTG00000008448) #11	XRCC6 (ENSTMTG00000008458) #12	DESI1 (ENSTMTG00000008481) #13	PMM1 (ENSTMTG00000008492) #14	CSDC2 (ENSTMTG00000008503) #15	POLR3H (ENSTMTG00000003249) #16	ACO2 (ENSTMTG00000003259) #17	PHF5A (ENSTMTG00000003280) #18	TOB2 (ENSTMTG00000003292) #19	TEF (ENSTMTG00000003303) #20	ENSTMTG00000003315	ZC3H7B (ENSTMTG00000003337) #21	RANGAP1 (ENSTMTG00000003408) #22	ENSTMTG00000003576	CHADL (ENSTMTG00000003593) #23	L3MBTL2 (ENSTMTG00000003620) #24	EP300 (ENSTMTG00000003703) #25	RBX1 (ENSTMTG00000003773) #26	XPNPEP3 (ENSTMTG00000003795) #27	ENSTMTG00000003825 #29	SLC25A17 (ENSTMTG00000003852) #30	MCHR1 (ENSTMTG00000003871) #31	MRTFA (ENSTMTG00000003895) #32	SGSM3 (ENSTMTG00000003933) #33	ADSL (ENSTMTG00000003987) #34	TNRC6B (ENSTMTG00000004079) #35	FAM83F (ENSTMTG00000004780) #36	GRAP2 (ENSTMTG00000004819) #37
Chinese turtle	MODERN SPECIES	1164						ENSPSIG00000008759 #12	DESI1 (ENSPSIG00000008686) #13	PMM1 (ENSPSIG00000008638) #14	CSDC2 (ENSPSIG00000008362) #15	POLR3H (ENSPSIG00000008284) #16	ACO2 (ENSPSIG00000007077) #17	PHF5A (ENSPSIG00000007014) #18	TOB2 (ENSPSIG00000007002) #19	TEF (ENSPSIG00000006835) #20	ZC3H7B (ENSPSIG00000005743) #21	RANGAP1 (ENSPSIG00000005458) #22	ENSPSIG00000005447	CHADL (ENSPSIG00000005321) #23	L3MBTL2 (ENSPSIG00000005049) #24	EP300 (ENSPSIG00000004772) #25	RBX1 (ENSPSIG00000004730) #26	XPNPEP3 (ENSPSIG00000004711) #27	ENSPSIG00000004553 #29	SLC25A17 (ENSPSIG00000004546) #30	MRTFA (ENSPSIG00000007042) #32	SGSM3 (ENSPSIG00000006114) #33	ADSL (ENSPSIG00000005445) #34	TNRC6B (ENSPSIG00000005318) #35	ENSPSIG00000001693	THBS1 (ENSPSIG00000004513)	ENSPSIG00000004436
Archosauria	ANCESTRAL SPECIES	4	ENSGT00940000163663.A	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840 #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.r #29	ENSGT00920000149129 #30	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000179237	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37	ENSGT00940000161730
Aves	ANCESTRAL SPECIES	1	ENSGT00940000163663.A	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840 #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.r #29	ENSGT00920000149129 #30	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000179237	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37	ENSGT00940000158594
Neognathae	ANCESTRAL SPECIES	3	ENSGT00940000163663.A	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840 #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.r #29	ENSGT00920000149129 #30	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000179237	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37	ENSGT00940000158594
Neognathae_b	ANCESTRAL SPECIES	2	ENSGT00940000163663.A	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840 #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.r #29	ENSGT00920000149129 #30	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000179237	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37	ENSGT00940000158594
Neognathae_c	ANCESTRAL SPECIES		ENSGT00940000163663.A	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840 #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.r #29	ENSGT00920000149129 #30	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37	ENSGT00940000158594	ENSGT00390000016774
Golden eagle	MODERN SPECIES	8	ENSACCG00020010760	SREBF2 (ENSACCG00020010779) #8	CCDC134 (ENSACCG00020010797) #9	MEI1 (ENSACCG00020010827) #10	SNU13 (ENSACCG00020010839) #11	XRCC6 (ENSACCG00020010932) #12	DESI1 (ENSACCG00020010985) #13	PMM1 (ENSACCG00020010995) #14	CSDC2 (ENSACCG00020011025) #15	POLR3H (ENSACCG00020011032) #16	ACO2 (ENSACCG00020011045) #17	PHF5A (ENSACCG00020011070) #18	TOB2 (ENSACCG00020011079) #19	TEF (ENSACCG00020011092) #20	ZC3H7B (ENSACCG00020011103) #21	RANGAP1 (ENSACCG00020011151) #22	CHADL (ENSACCG00020011167) #23	L3MBTL2 (ENSACCG00020011187) #24	EP300 (ENSACCG00020011223) #25	RBX1 (ENSACCG00020011253) #26	XPNPEP3 (ENSACCG00020011272) #27	ST13 (ENSACCG00020011290) #29	SLC25A17 (ENSACCG00020011303) #30	MRTFA (ENSACCG00020011330) #32	SGSM3 (ENSACCG00020011355) #33	ADSL (ENSACCG00020011368) #34	TNRC6B (ENSACCG00020011399) #35	FAM83F (ENSACCG00020011437) #36	ENSACCG00020011449 #37	ENSACCG00020011462 #37	CACNA1I (ENSACCG00020011911)
Kakapo	MODERN SPECIES	20	SREBF2 (ENSSHBG00005004151) #8	CCDC134 (ENSSHBG00005004136) #9	ENSSHBG00005004126 #10	ENSSHBG00005004117 #10	SNU13 (ENSSHBG00005004108) #11	XRCC6 (ENSSHBG00005004097) #12	DESI1 (ENSSHBG00005004088) #13	PMM1 (ENSSHBG00005004080) #14	CSDC2 (ENSSHBG00005004072) #15	POLR3H (ENSSHBG00005004066) #16	ACO2 (ENSSHBG00005004055) #17	PHF5A (ENSSHBG00005004044) #18	TOB2 (ENSSHBG00005004039) #19	TEF (ENSSHBG00005004030) #20	ZC3H7B (ENSSHBG00005004011) #21	RANGAP1 (ENSSHBG00005003995) #22	CHADL (ENSSHBG00005003983) #23	L3MBTL2 (ENSSHBG00005003962) #24	EP300 (ENSSHBG00005003877) #25	RBX1 (ENSSHBG00005003797) #26	XPNPEP3 (ENSSHBG00005003788) #27	ST13 (ENSSHBG00005003778) #29	SLC25A17 (ENSSHBG00005003758) #30	MRTFA (ENSSHBG00005003736) #32	SGSM3 (ENSSHBG00005003400) #33	ADSL (ENSSHBG00005003214) #34	ENSSHBG00005003174 #35	ENSSHBG00005003140 #35	FAM83F (ENSSHBG00005003111) #36	GRAP2 (ENSSHBG00005003082) #37	ENSSHBG00005003070
Passeriformes	ANCESTRAL SPECIES	3	ENSGT00940000163663.A	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840 #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.r #29	ENSGT00920000149129 #30	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000179237	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37	ENSGT00940000158594
Great tit	MODERN SPECIES	10	ENSPMJG00000003157	SREBF2 (ENSPMJG00000003158) #8	CCDC134 (ENSPMJG00000003161) #9	MEI1 (ENSPMJG00000003253) #10	SNU13 (ENSPMJG00000003278) #11	XRCC6 (ENSPMJG00000003281) #12	DESI1 (ENSPMJG00000003706) #13	PMM1 (ENSPMJG00000003708) #14	CSDC2 (ENSPMJG00000004340) #15	POLR3H (ENSPMJG00000004341) #16	ACO2 (ENSPMJG00000004344) #17	PHF5A (ENSPMJG00000004457) #18	TOB2 (ENSPMJG00000004458) #19	TEF (ENSPMJG00000004460) #20	ZC3H7B (ENSPMJG00000004469) #21	RANGAP1 (ENSPMJG00000004991) #22	CHADL (ENSPMJG00000005316) #23	L3MBTL2 (ENSPMJG00000005319) #24	EP300 (ENSPMJG00000005447) #25	RBX1 (ENSPMJG00000007453) #26	XPNPEP3 (ENSPMJG00000007454) #27	ST13 (ENSPMJG00000007467) #29	SLC25A17 (ENSPMJG00000007471) #30	MRTFA (ENSPMJG00000007562) #32	SGSM3 (ENSPMJG00000007584) #33	ADSL (ENSPMJG00000007593) #34	TNRC6B (ENSPMJG00000007596) #35	FAM83F (ENSPMJG00000007663) #36	GRAP2 (ENSPMJG00000007667) #37	CACNA1I (ENSPMJG00000007671)	ATF4 (ENSPMJG00000007715)
Passeriformes_d	ANCESTRAL SPECIES	3	ENSGT00940000163663.A	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840 #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.r #29	ENSGT00920000149129 #30	ENSGT00950000182979.a.b.b.a.b #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000179237	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37	ENSGT00940000158594
Flycatcher	MODERN SPECIES	10	ENSFALG00000011819 #9	ENSFALG00000026059 #9	MEI1 (ENSFALG00000011849) #10	SNU13 (ENSFALG00000028405) #11	XRCC6 (ENSFALG00000011908) #12	ENSFALG00000028431 #13	ENSFALG00000027725 #13	ENSFALG00000024026 ##14	PMM1 (ENSFALG00000029020) #14	CSDC2 (ENSFALG00000011950) #15	POLR3H (ENSFALG00000011952) #16	PHF5A (ENSFALG00000025716) #18	TOB2 (ENSFALG00000011965) #19	TEF (ENSFALG00000011967) #20	ZC3H7B (ENSFALG00000011968) #21	RANGAP1 (ENSFALG00000011980) #22	CHADL (ENSFALG00000011997) #23	L3MBTL2 (ENSFALG00000012014) #24	EP300 (ENSFALG00000012042) #25	RBX1 (ENSFALG00000012051) #26	XPNPEP3 (ENSFALG00000025613) #27	SLC25A17 (ENSFALG00000027046) #30	ENSFALG00000025665	MRTFA (ENSFALG00000026521) #32	SGSM3 (ENSFALG00000012148) #33	ADSL (ENSFALG00000012164) #34	TNRC6B (ENSFALG00000012195) #35	FAM83F (ENSFALG00000012211) #36	GRAP2 (ENSFALG00000027504) #37	CACNA1I (ENSFALG00000012255)	ENSFALG00000025172
Passeriformes_g	ANCESTRAL SPECIES	4	ENSGT00940000163663.A	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840 #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.r #29	ENSGT00920000149129 #30	ENSGT00950000182979.a.b.b.a.b #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000179237	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37	ENSGT00940000158594
Passeroidea	ANCESTRAL SPECIES	3	ENSGT00940000163663.A	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840 #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.r #29	ENSGT00920000149129 #30	ENSGT00950000182979.a.b.b.a.b #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000179237	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37	ENSGT00940000158594
Zebra finch	MODERN SPECIES	11	ENSTGUG00000029583	SREBF2 (ENSTGUG00000009772) #8	CCDC134 (ENSTGUG00000009807) #9	MEI1 (ENSTGUG00000009814) #10	SNU13 (ENSTGUG00000021658) #11	XRCC6 (ENSTGUG00000009852) #12	DESI1 (ENSTGUG00000023310) #13	PMM1 (ENSTGUG00000009884) #14	CSDC2 (ENSTGUG00000019504) #15	POLR3H (ENSTGUG00000009901) #16	ACO2 (ENSTGUG00000009907) #17	PHF5A (ENSTGUG00000025618) #18	TOB2 (ENSTGUG00000009941) #19	TEF (ENSTGUG00000009944) #20	ZC3H7B (ENSTGUG00000009946) #21	RANGAP1 (ENSTGUG00000009969) #22	L3MBTL2 (ENSTGUG00000010000) #24	EP300 (ENSTGUG00000010016) #25	RBX1 (ENSTGUG00000010035) #26	XPNPEP3 (ENSTGUG00000010038) #27	ST13 (ENSTGUG00000010046) #29	SLC25A17 (ENSTGUG00000010069) #30	MRTFA (ENSTGUG00000010083) #32	SGSM3 (ENSTGUG00000010093) #33	ADSL (ENSTGUG00000010111) #34	TNRC6B (ENSTGUG00000010138) #35	FAM83F (ENSTGUG00000010169) #36	GRAP2 (ENSTGUG00000024825) #37	CACNA1I (ENSTGUG00000010198)	RPS19BP1 (ENSTGUG00000010217)	ATF4 (ENSTGUG00000010225)
Common canary	MODERN SPECIES	6	ENSSCAG00000005851	ENSSCAG00000005849	SREBF2 (ENSSCAG00000005828) #8	MEI1 (ENSSCAG00000005808) #10	SNU13 (ENSSCAG00000005802) #11	XRCC6 (ENSSCAG00000005654) #12	DESI1 (ENSSCAG00000005622) #13	PMM1 (ENSSCAG00000005616) #14	CSDC2 (ENSSCAG00000005611) #15	POLR3H (ENSSCAG00000005603) #16	ACO2 (ENSSCAG00000005597) #17	PHF5A (ENSSCAG00000005591) #18	TOB2 (ENSSCAG00000005587) #19	TEF (ENSSCAG00000005576) #20	ZC3H7B (ENSSCAG00000005561) #21	RANGAP1 (ENSSCAG00000005490) #22	CHADL (ENSSCAG00000005472) #23	L3MBTL2 (ENSSCAG00000005464) #24	EP300 (ENSSCAG00000005456) #25	RBX1 (ENSSCAG00000005448) #26	XPNPEP3 (ENSSCAG00000005442) #27	ST13 (ENSSCAG00000005434) #29	SLC25A17 (ENSSCAG00000005430) #30	MRTFA (ENSSCAG00000005424) #32	SGSM3 (ENSSCAG00000005414) #33	ADSL (ENSSCAG00000005406) #34	ENSSCAG00000005401	TNRC6B (ENSSCAG00000005385) #35	FAM83F (ENSSCAG00000005376) #36	GRAP2 (ENSSCAG00000005373) #37	CACNA1I (ENSSCAG00000005203)
Medium ground finch	MODERN SPECIES	37	ENSGFOG00000008111	SREBF2 (ENSGFOG00000008078) #8	ENSGFOG00000008064 #10	ENSGFOG00000008048 #10	SNU13 (ENSGFOG00000008044) #11	XRCC6 (ENSGFOG00000008034) #12	DESI1 (ENSGFOG00000008027) #13	PMM1 (ENSGFOG00000008019) #14	CSDC2 (ENSGFOG00000008013) #15	POLR3H (ENSGFOG00000008010) #16	ACO2 (ENSGFOG00000007995) #17	PHF5A (ENSGFOG00000007986) #18	TOB2 (ENSGFOG00000007976) #19	TEF (ENSGFOG00000007970) #20	ZC3H7B (ENSGFOG00000007942) #21	RANGAP1 (ENSGFOG00000007926) #22	CHADL (ENSGFOG00000007916) #23	L3MBTL2 (ENSGFOG00000007896) #24	EP300 (ENSGFOG00000005659) #25	RBX1 (ENSGFOG00000005560) #26	XPNPEP3 (ENSGFOG00000005541) #27	ST13 (ENSGFOG00000005528) #29	SLC25A17 (ENSGFOG00000005521) #30	MRTFA (ENSGFOG00000005485) #32	SGSM3 (ENSGFOG00000005382) #33	ADSL (ENSGFOG00000005355) #34	ENSGFOG00000005347	TNRC6B (ENSGFOG00000005299) #35	FAM83F (ENSGFOG00000005221) #36	GRAP2 (ENSGFOG00000005145) #37	ENSGFOG00000005120
Galloanserae	ANCESTRAL SPECIES	3	ENSGT00940000163663.A	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840 #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.r #29	ENSGT00920000149129 #30	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37	ENSGT00940000158594	ENSGT01000000215591
Anatidae	ANCESTRAL SPECIES	14	ENSGT00940000154485.A	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840 #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23
Pink-footed goose	MODERN SPECIES	36	ENSABRG00000004906	SREBF2 (ENSABRG00000004888) #8	CCDC134 (ENSABRG00000004875) #9	MEI1 (ENSABRG00000004785) #10	SNU13 (ENSABRG00000004772) #11	XRCC6 (ENSABRG00000004750) #12	DESI1 (ENSABRG00000004740) #13	PMM1 (ENSABRG00000004715) #14	CSDC2 (ENSABRG00000004705) #15	POLR3H (ENSABRG00000004688) #16	ACO2 (ENSABRG00000004640) #17	PHF5A (ENSABRG00000004614) #18	TOB2 (ENSABRG00000004605) #19	TEF (ENSABRG00000004576) #20	ZC3H7B (ENSABRG00000004538) #21	RANGAP1 (ENSABRG00000004047) #22	CHADL (ENSABRG00000003979) #23	ENSABRG00000003973	ENSABRG00000003943	LIN7A (ENSABRG00000003928)	MYF5 (ENSABRG00000003896)	MYF6 (ENSABRG00000003882)	PTPRQ (ENSABRG00000003711)	OTOGL (ENSABRG00000003060)	RPS16 (ENSABRG00000002997)	PPP1R12A (ENSABRG00000002856)	PAWR (ENSABRG00000002832)	SYT1 (ENSABRG00000002806)	ENSABRG00000002691	NAV3 (ENSABRG00000002539)	E2F7 (ENSABRG00000002456)
Duck	MODERN SPECIES		SREBF2 (ENSAPLG00000003145) #8	CCDC134 (ENSAPLG00000003824) #9	ENSAPLG00000020731 #10	ENSAPLG00000003972 #10	ENSAPLG00000030477 #10	SNU13 (ENSAPLG00000001022) #11	XRCC6 (ENSAPLG00000004469) #12	DESI1 (ENSAPLG00000016507) #13	CSDC2 (ENSAPLG00000005057) #15	POLR3H (ENSAPLG00000005063) #16	ACO2 (ENSAPLG00000005198) #17	PHF5A (ENSAPLG00000021195) #18	TOB2 (ENSAPLG00000023708) #19	TEF (ENSAPLG00000005838) #20	ZC3H7B (ENSAPLG00000005880) #21	RANGAP1 (ENSAPLG00000006767) #22	ENSAPLG00000029393	LIN7A (ENSAPLG00000017756)	ENSAPLG00000001136	MYF5 (ENSAPLG00000001124)	MYF6 (ENSAPLG00000002254)	PTPRQ (ENSAPLG00000016187)	ENSAPLG00000019979	OTOGL (ENSAPLG00000015946)	RPS16 (ENSAPLG00000015907)	PPP1R12A (ENSAPLG00000015197)	PAWR (ENSAPLG00000027740)	SYT1 (ENSAPLG00000014912)	ENSAPLG00000029309	NAV3 (ENSAPLG00000014672)	E2F7 (ENSAPLG00000014506)
Phasianidae	ANCESTRAL SPECIES		ENSGT00940000163663.A	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840 #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.r #29	ENSGT00920000149129 #30	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37	ENSGT00940000158594	ENSGT00390000016774
Japanese quail	MODERN SPECIES		ENSCJPG00005009093	SREBF2 (ENSCJPG00005009094) #8	CCDC134 (ENSCJPG00005009096) #9	MEI1 (ENSCJPG00005009097) #10	SNU13 (ENSCJPG00005009098) #11	XRCC6 (ENSCJPG00005009099) #12	DESI1 (ENSCJPG00005009100) #13	ENSCJPG00005009101 ##14	CSDC2 (ENSCJPG00005009102) #15	POLR3H (ENSCJPG00005009103) #16	ACO2 (ENSCJPG00005009104) #17	PHF5A (ENSCJPG00005009105) #18	TOB2 (ENSCJPG00005009106) #19	TEF (ENSCJPG00005009107) #20	ZC3H7B (ENSCJPG00005009108) #21	RANGAP1 (ENSCJPG00005009109) #22	ENSCJPG00005009247	L3MBTL2 (ENSCJPG00005009248) #24	EP300 (ENSCJPG00005009352) #25	RBX1 (ENSCJPG00005009355) #26	XPNPEP3 (ENSCJPG00005009357) #27	ST13 (ENSCJPG00005009358) #29	ENSCJPG00005009360 #30	ENSCJPG00005009364 #30	MRTFA (ENSCJPG00005009371) #32	SGSM3 (ENSCJPG00005009373) #33	ADSL (ENSCJPG00005009384) #34	TNRC6B (ENSCJPG00005010212) #35	FAM83F (ENSCJPG00005010213) #36	GRAP2 (ENSCJPG00005010214) #37	CACNA1I (ENSCJPG00005010236)
Phasianidae_b	ANCESTRAL SPECIES		ENSGT00940000163663.A	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840 #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.r #29	ENSGT00920000149129 #30	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37	ENSGT00940000158594	ENSGT00390000016774
Chicken	MODERN SPECIES		SHISA8 (ENSGALG00010010680)	SREBF2 (ENSGALG00010010706) #8	CCDC134 (ENSGALG00010010740) #9	MEI1 (ENSGALG00010010761) #10	ENSGALG00010010771	XRCC6 (ENSGALG00010010792) #12	DESI1 (ENSGALG00010010831) #13	PMM1 (ENSGALG00010010841) #14	CSDC2 (ENSGALG00010010856) #15	POLR3H (ENSGALG00010010891) #16	ACO2 (ENSGALG00010012720) #17	PHF5A (ENSGALG00010012765) #18	TOB2 (ENSGALG00010012747) #19	TEF (ENSGALG00010012786) #20	ZC3H7B (ENSGALG00010012797) #21	RANGAP1 (ENSGALG00010012819) #22	CHADL (ENSGALG00010012832) #23	L3MBTL2 (ENSGALG00010012841) #24	EP300 (ENSGALG00010012865) #25	RBX1 (ENSGALG00010012900) #26	XPNPEP3 (ENSGALG00010012910) #27	ST13P5 (ENSGALG00010012948) #29	SLC25A17 (ENSGALG00010012962) #30	MRTFA (ENSGALG00010013053) #32	SGSM3 (ENSGALG00010013084) #33	ADSL (ENSGALG00010013095) #34	TNRC6B (ENSGALG00010013146) #35	FAM83F (ENSGALG00010013164) #36	GRAP2 (ENSGALG00010013194) #37	CACNA1I (ENSGALG00010012410)	RPS19BP1 (ENSGALG00010012378)
Turkey	MODERN SPECIES		ENSMGAG00000020447	SREBF2 (ENSMGAG00000012074) #8	CCDC134 (ENSMGAG00000012164) #9	MEI1 (ENSMGAG00000012159) #10	SNU13 (ENSMGAG00000012155) #11	XRCC6 (ENSMGAG00000012146) #12	DESI1 (ENSMGAG00000012139) #13	PMM1 (ENSMGAG00000012134) #14	ENSMGAG00000012110 #17	CSDC2 (ENSMGAG00000012131) #15	POLR3H (ENSMGAG00000012126) #16	PHF5A (ENSMGAG00000012169) #18	TOB2 (ENSMGAG00000015716) #19	TEF (ENSMGAG00000012262) #20	ZC3H7B (ENSMGAG00000012234) #21	RANGAP1 (ENSMGAG00000012215) #22	CHADL (ENSMGAG00000012213) #23	L3MBTL2 (ENSMGAG00000012189) #24	EP300 (ENSMGAG00000012170) #25	RBX1 (ENSMGAG00000012285) #26	XPNPEP3 (ENSMGAG00000012279) #27	ST13 (ENSMGAG00000012265) #29	SLC25A17 (ENSMGAG00000012312) #30	ENSMGAG00000016396	MRTFA (ENSMGAG00000012307) #32	SGSM3 (ENSMGAG00000012289) #33	ADSL (ENSMGAG00000012313) #34	ENSMGAG00000021539 #35	ENSMGAG00000012333 #35	FAM83F (ENSMGAG00000012348) #36	GRAP2 (ENSMGAG00000012343) #37
African ostrich	MODERN SPECIES	282	SMIM45 (ENSSCUG00000000933)	CENPM (ENSSCUG00000000931)	TNFRSF13C (ENSSCUG00000000930)	SREBF2 (ENSSCUG00000000927) #8	CCDC134 (ENSSCUG00000000917) #9	SNU13 (ENSSCUG00000000916) #11	MEI1 (ENSSCUG00000000908) #10	DESI1 (ENSSCUG00000000906) #13	PMM1 (ENSSCUG00000000905) #14	POLR3H (ENSSCUG00000000902) #16	ACO2 (ENSSCUG00000000901) #17	PHF5A (ENSSCUG00000000899) #18	TOB2 (ENSSCUG00000000898) #19	TEF (ENSSCUG00000000897) #20	ZC3H7B (ENSSCUG00000000894) #21	RANGAP1 (ENSSCUG00000000888) #22	CHADL (ENSSCUG00000000887) #23	L3MBTL2 (ENSSCUG00000000883) #24	EP300 (ENSSCUG00000000881) #25	RBX1 (ENSSCUG00000000878) #26	XPNPEP3 (ENSSCUG00000000876) #27	ENSSCUG00000000875 #29	SLC25A17 (ENSSCUG00000000874) #30	MRTFA (ENSSCUG00000000871) #32	SGSM3 (ENSSCUG00000000867) #33	ADSL (ENSSCUG00000000862) #34	TNRC6B (ENSSCUG00000000852) #35	FAM83F (ENSSCUG00000000847) #36	GRAP2 (ENSSCUG00000000841) #37	CACNA1I (ENSSCUG00000000784)	RPS19BP1 (ENSSCUG00000000714)
Australian saltwater crocodile	MODERN SPECIES	49	ENSCPRG00005019077 #10	ENSCPRG00005019076 #10	ENSCPRG00005019075 #11	ENSCPRG00005019074 #11	XRCC6 (ENSCPRG00005019073) #12	ENSCPRG00005019072	DESI1 (ENSCPRG00005019071) #13	PMM1 (ENSCPRG00005019070) #14	CSDC2 (ENSCPRG00005019069) #15	POLR3H (ENSCPRG00005019068) #16	ACO2 (ENSCPRG00005019067) #17	PHF5A (ENSCPRG00005019066) #18	TOB2 (ENSCPRG00005019065) #19	TEF (ENSCPRG00005019063) #20	ZC3H7B (ENSCPRG00005019062) #21	RANGAP1 (ENSCPRG00005019061) #22	ENSCPRG00005019060	CHADL (ENSCPRG00005019059) #23	L3MBTL2 (ENSCPRG00005019058) #24	EP300 (ENSCPRG00005019057) #25	RBX1 (ENSCPRG00005019056) #26	XPNPEP3 (ENSCPRG00005019054) #27	ENSCPRG00005019053 #29	SLC25A17 (ENSCPRG00005019052) #30	MCHR1 (ENSCPRG00005019051) #31	MRTFA (ENSCPRG00005019050) #32	SGSM3 (ENSCPRG00005019049) #33	ADSL (ENSCPRG00005019048) #34	TNRC6B (ENSCPRG00005019047) #35	FAM83F (ENSCPRG00005019045) #36	GRAP2 (ENSCPRG00005019044) #37
Lepidosauria	ANCESTRAL SPECIES	3	ENSGT00940000163663.A	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840 #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.r #29	ENSGT00920000149129 #30	ENSGT00950000182979.a.b.b.a #32	ENSGT00950000182979.a.b.a ##32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37	ENSGT00940000161730
Episquamata	ANCESTRAL SPECIES	3	ENSGT00390000017504	ENSGT00940000163663.A	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840 #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.r #29	ENSGT00920000149129 #30	ENSGT00950000182979.a.b.b.a #32	ENSGT00950000182979.a.b.a ##32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37	ENSGT00940000161730
Laterata	ANCESTRAL SPECIES	6	ENSGT00390000017504	ENSGT00940000163663.A	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840 #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000161826.C	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.r #29	ENSGT00920000149129 #30	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307.e #37	ENSGT00940000157307.f #37
Argentine black and white tegu	MODERN SPECIES	6	ENSSMRG00000014769	ENSSMRG00000014770	SREBF2 (ENSSMRG00000014771) #8	CCDC134 (ENSSMRG00000014772) #9	ENSSMRG00000014775 #10	ENSSMRG00000014776	XRCC6 (ENSSMRG00000014777) #12	DESI1 (ENSSMRG00000015347) #13	PMM1 (ENSSMRG00000015348) #14	CSDC2 (ENSSMRG00000015349) #15	ACO2 (ENSSMRG00000015350) #17	PHF5A (ENSSMRG00000015351) #18	TOB2 (ENSSMRG00000015352) #19	TEF (ENSSMRG00000015355) #20	ZC3H7B (ENSSMRG00000015357) #21	RANGAP1 (ENSSMRG00000015363) #22	ENSSMRG00000015566	CHADL (ENSSMRG00000015568) #23	L3MBTL2 (ENSSMRG00000015569) #24	EP300 (ENSSMRG00000015570) #25	RBX1 (ENSSMRG00000015572) #26	XPNPEP3 (ENSSMRG00000015573) #27	ENSSMRG00000015574 #29	SLC25A17 (ENSSMRG00000015575) #30	MRTFA (ENSSMRG00000015576) #32	SGSM3 (ENSSMRG00000015577) #33	ADSL (ENSSMRG00000015579) #34	TNRC6B (ENSSMRG00000015580) #35	FAM83F (ENSSMRG00000015582) #36	ENSSMRG00000015583 #37	ENSSMRG00000015584 #37
Common wall lizard	MODERN SPECIES	1	ENSPMRG00000020277	ENSPMRG00000020282	SREBF2 (ENSPMRG00000020292) #8	CCDC134 (ENSPMRG00000020301) #9	MEI1 (ENSPMRG00000020311) #10	SNU13 (ENSPMRG00000020324) #11	XRCC6 (ENSPMRG00000020330) #12	DESI1 (ENSPMRG00000020343) #13	PMM1 (ENSPMRG00000020353) #14	CSDC2 (ENSPMRG00000020362) #15	ACO2 (ENSPMRG00000020422) #17	PHF5A (ENSPMRG00000020857) #18	TOB2 (ENSPMRG00000020859) #19	TEF (ENSPMRG00000020863) #20	ZC3H7B (ENSPMRG00000020871) #21	RANGAP1 (ENSPMRG00000020887) #22	ENSPMRG00000020893	CHADL (ENSPMRG00000020900) #23	ENSPMRG00000020965 #24	EP300 (ENSPMRG00000021378) #25	RBX1 (ENSPMRG00000021419) #26	XPNPEP3 (ENSPMRG00000021424) #27	ENSPMRG00000021430 #29	SLC25A17 (ENSPMRG00000021442) #30	ENSPMRG00000021454	MRTFA (ENSPMRG00000021490) #32	SGSM3 (ENSPMRG00000021604) #33	ADSL (ENSPMRG00000021633) #34	TNRC6B (ENSPMRG00000021642) #35	FAM83F (ENSPMRG00000021645) #36	ENSPMRG00000021649
Toxicofera	ANCESTRAL SPECIES	7	ENSGT00390000017504	ENSGT00940000163663.A	ENSGT00940000157339 #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840 #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.r #29	ENSGT00920000149129 #30	ENSGT00950000182979.a.b.b.a #32	ENSGT00950000182979.a.b.a ##32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37	ENSGT00940000161730
Elapidae	ANCESTRAL SPECIES	6	ENSGT00390000017504	ENSGT00940000163663.A	ENSGT00940000157339.a #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840 #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.r #29	ENSGT00920000149129 #30	ENSGT00950000182979.a.b.b.a #32	ENSGT00950000182979.a.b.a ##32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998.a #36	ENSGT00940000157307 #37	ENSGT00940000161730
Indian cobra	DUPLICATION
Indian cobra	MODERN SPECIES	6	CENPM (ENSNNAG00000003277)	ENSNNAG00000003289	SREBF2 (ENSNNAG00000003397) #8	CCDC134 (ENSNNAG00000004264) #9	ENSNNAG00000004288 #10	SNU13 (ENSNNAG00000004338) #11	XRCC6 (ENSNNAG00000004359) #12	DESI1 (ENSNNAG00000004395) #13	PMM1 (ENSNNAG00000004428) #14	CSDC2 (ENSNNAG00000004467) #15	ACO2 (ENSNNAG00000004487) #17	PHF5A (ENSNNAG00000004530) #18	TOB2 (ENSNNAG00000004539) #19	TEF (ENSNNAG00000004545) #20	ZC3H7B (ENSNNAG00000004566) #21	ENSNNAG00000004583 #22	ENSNNAG00000004605 #22	L3MBTL2 (ENSNNAG00000004623) #24	EP300 (ENSNNAG00000004664) #25	RBX1 (ENSNNAG00000004745) #26	XPNPEP3 (ENSNNAG00000004765) #27	ENSNNAG00000004788 #29	SLC25A17 (ENSNNAG00000004807) #30	MRTFA (ENSNNAG00000004822) #32	ENSNNAG00000004858 ##32	SGSM3 (ENSNNAG00000004902) #33	TNRC6B (ENSNNAG00000005431) #35	FAM83F (ENSNNAG00000005582) #36	GRAP2 (ENSNNAG00000005604) #37	ENSNNAG00000005619	CACNA1I (ENSNNAG00000005643)
Indian cobra	MODERN SPECIES	6	ENSNNAG00000003289	SREBF2 (ENSNNAG00000003397) #8	CCDC134 (ENSNNAG00000004264) #9	ENSNNAG00000004288 #10	SNU13 (ENSNNAG00000004338) #11	XRCC6 (ENSNNAG00000004359) #12	DESI1 (ENSNNAG00000004395) #13	PMM1 (ENSNNAG00000004428) #14	CSDC2 (ENSNNAG00000004467) #15	ACO2 (ENSNNAG00000004487) #17	PHF5A (ENSNNAG00000004530) #18	TOB2 (ENSNNAG00000004539) #19	TEF (ENSNNAG00000004545) #20	ZC3H7B (ENSNNAG00000004566) #21	ENSNNAG00000004583 #22	ENSNNAG00000004605 #22	L3MBTL2 (ENSNNAG00000004623) #24	EP300 (ENSNNAG00000004664) #25	RBX1 (ENSNNAG00000004745) #26	XPNPEP3 (ENSNNAG00000004765) #27	ENSNNAG00000004788 #29	SLC25A17 (ENSNNAG00000004807) #30	MRTFA (ENSNNAG00000004822) #32	ENSNNAG00000004858 ##32	SGSM3 (ENSNNAG00000004902) #33	TNRC6B (ENSNNAG00000005431) #35	FAM83F (ENSNNAG00000005582) #36	GRAP2 (ENSNNAG00000005604) #37	ENSNNAG00000005619	CACNA1I (ENSNNAG00000005643)	RPS19BP1 (ENSNNAG00000005761)
Elapidae_a	ANCESTRAL SPECIES	1	ENSGT00390000017504	ENSGT00940000163663.A	ENSGT00940000157339.a #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840 #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.r #29	ENSGT00920000149129 #30	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998.a #36	ENSGT00940000157307 #37	ENSGT00940000161730	ENSGT00940000158594
Acanthophiinae	ANCESTRAL SPECIES		ENSGT00390000017504	ENSGT00940000163663.A	ENSGT00940000157339.a #8	ENSGT00390000020164 #9	ENSGT00390000002077 #10	ENSGT00550000074840 #11	ENSGT00940000153239.B #12	ENSGT00730000111100 #13	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00940000153657.A #27	ENSGT00390000001347.r #29	ENSGT00920000149129 #30	ENSGT00950000182979.a.b.b.a #32	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998.a #36	ENSGT00940000157307 #37	ENSGT00940000161730	ENSGT00940000158594
Mainland tiger snake	MODERN SPECIES	6	ENSNSUG00000003613	ENSNSUG00000003617	SREBF2 (ENSNSUG00000003621) #8	CCDC134 (ENSNSUG00000003692) #9	ENSNSUG00000003697 #10	SNU13 (ENSNSUG00000003702) #11	XRCC6 (ENSNSUG00000003704) #12	DESI1 (ENSNSUG00000003709) #13	PMM1 (ENSNSUG00000003714) #14	CSDC2 (ENSNSUG00000003745) #15	ACO2 (ENSNSUG00000003747) #17	PHF5A (ENSNSUG00000003750) #18	TOB2 (ENSNSUG00000003753) #19	TEF (ENSNSUG00000003754) #20	ZC3H7B (ENSNSUG00000003755) #21	RANGAP1 (ENSNSUG00000003774) #22	L3MBTL2 (ENSNSUG00000004288) #24	EP300 (ENSNSUG00000004324) #25	RBX1 (ENSNSUG00000004338) #26	XPNPEP3 (ENSNSUG00000004342) #27	ENSNSUG00000004350	SLC25A17 (ENSNSUG00000004369) #30	ENSNSUG00000004377 #32	ENSNSUG00000004379 #32	SGSM3 (ENSNSUG00000004382) #33	ADSL (ENSNSUG00000004394) #34	TNRC6B (ENSNSUG00000004407) #35	FAM83F (ENSNSUG00000004863) #36	GRAP2 (ENSNSUG00000004866) #37	ENSNSUG00000004869	CACNA1I (ENSNSUG00000004870)
Eastern brown snake	MODERN SPECIES		ENSPTXG00000000155	SREBF2 (ENSPTXG00000000089) #8	CCDC134 (ENSPTXG00000000073) #9	ENSPTXG00000000049 #10	SNU13 (ENSPTXG00000000028) #11	XRCC6 (ENSPTXG00000000018) #12	DESI1 (ENSPTXG00000000015) #13	PMM1 (ENSPTXG00000000011) #14	CSDC2 (ENSPTXG00000001696) #15	ACO2 (ENSPTXG00000001693) #17	PHF5A (ENSPTXG00000001692) #18	TOB2 (ENSPTXG00000001691) #19	TEF (ENSPTXG00000001690) #20	ENSPTXG00000001688	ZC3H7B (ENSPTXG00000001686) #21	RANGAP1 (ENSPTXG00000001684) #22	CHADL (ENSPTXG00000001681) #23	L3MBTL2 (ENSPTXG00000001671) #24	EP300 (ENSPTXG00000001636) #25	RBX1 (ENSPTXG00000001586) #26	XPNPEP3 (ENSPTXG00000001583) #27	ENSPTXG00000001579 #29	SLC25A17 (ENSPTXG00000001574) #30	MRTFA (ENSPTXG00000001572) #32	SGSM3 (ENSPTXG00000001446) #33	ADSL (ENSPTXG00000001437) #34	TNRC6B (ENSPTXG00000001407) #35	FAM83F (ENSPTXG00000001386) #36	GRAP2 (ENSPTXG00000001380) #37	ENSPTXG00000001373	CACNA1I (ENSPTXG00000001364)
Blue-lipped sea krait	MODERN SPECIES	8766																RANGAP1 (ENSLLTG00000010607) #22
Lizard	MODERN SPECIES	4	CENPM (ENSACAG00000039773)	shisa8 (ENSACAG00000040885)	SREBF2 (ENSACAG00000004146) #8	CCDC134 (ENSACAG00000004397) #9	ENSACAG00000004476 #10	SNU13 (ENSACAG00000037043) #11	XRCC6 (ENSACAG00000004508) #12	DESI1 (ENSACAG00000004597) #13	PMM1 (ENSACAG00000004619) #14	CSDC2 (ENSACAG00000042839) #15	ACO2 (ENSACAG00000004677) #17	PHF5A (ENSACAG00000004775) #18	TOB2 (ENSACAG00000004782) #19	TEF (ENSACAG00000004810) #20	ZC3H7B (ENSACAG00000004820) #21	RANGAP1 (ENSACAG00000004943) #22	ENSACAG00000027273	L3MBTL2 (ENSACAG00000005056) #24	EP300 (ENSACAG00000005148) #25	RBX1 (ENSACAG00000005208) #26	XPNPEP3 (ENSACAG00000005215) #27	ENSACAG00000005227 #29	SLC25A17 (ENSACAG00000005318) #30	MRTFA (ENSACAG00000005348) #32	SGSM3 (ENSACAG00000005430) #33	ADSL (ENSACAG00000007206) #34	TNRC6B (ENSACAG00000007281) #35	FAM83F (ENSACAG00000007387) #36	GRAP2 (ENSACAG00000007407) #37	ENSACAG00000007459	ENSACAG00000041503
tuatara	MODERN SPECIES	1295				ENSSPUG00000012111 #10	SNU13 (ENSSPUG00000012098) #11	XRCC6 (ENSSPUG00000012086) #12	DESI1 (ENSSPUG00000012040) #13	ENSSPUG00000012027	PMM1 (ENSSPUG00000011697) #14	CSDC2 (ENSSPUG00000011628) #15	POLR3H (ENSSPUG00000011619) #16	ACO2 (ENSSPUG00000011600) #17	PHF5A (ENSSPUG00000011593) #18	TEF (ENSSPUG00000011581) #20	ZC3H7B (ENSSPUG00000011490) #21	RANGAP1 (ENSSPUG00000011454) #22	CHADL (ENSSPUG00000011437) #23	L3MBTL2 (ENSSPUG00000011413) #24	EP300 (ENSSPUG00000011389) #25	RBX1 (ENSSPUG00000011379) #26	XPNPEP3 (ENSSPUG00000011362) #27	ENSSPUG00000011346 #29	SLC25A17 (ENSSPUG00000011136) #30	MCHR1 (ENSSPUG00000011088) #31	ENSSPUG00000011074 #32	ENSSPUG00000011001 #32	SGSM3 (ENSSPUG00000010979) #33	ADSL (ENSSPUG00000010886) #34	TNRC6B (ENSSPUG00000010801) #35	FAM83F (ENSSPUG00000010758) #36	GRAP2 (ENSSPUG00000010737) #37
Anura	ANCESTRAL SPECIES	20	ENSGT00940000153536.a.a	ENSGT00940000153861.b	ENSGT00940000161112	ENSGT00940000158756	ENSGT00940000153560.b.b.b	ENSGT00940000158046	ENSGT00390000010415	ENSGT00390000010231	ENSGT00940000156057	ENSGT00390000000411	ENSGT00940000157805	ENSGT00390000012436	ENSGT00940000156865	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000157282 #33	ENSGT00950000183122.C #34	ENSGT00940000155813 #35	ENSGT00940000160998 #36	ENSGT00940000157307 #37	ENSGT00940000158594	ENSGT00390000016774	ENSGT00530000063801.a	ENSGT00390000013127.a	ENSGT01030000234887	ENSGT00390000008221	ENSGT00510000048276	ENSGT00950000182935.B.b.c	ENSGT01100000264550	ENSGT00390000017606.a.a
Frog	MODERN SPECIES	4	maff (ENSXETG00000038584)	pla2g6 (ENSXETG00000006353)	baiap2l2 (ENSXETG00000006351)	ENSXETG00000045607	sox10 (ENSXETG00000006348)	polr2f (ENSXETG00000006346)	c22orf23 (ENSXETG00000006345)	micall1 (ENSXETG00000006343)	eif3l (ENSXETG00000027274)	ankrd54 (ENSXETG00000030613)	hmgxb4 (ENSXETG00000006340)	tom1 (ENSXETG00000006339)	galr3 (ENSXETG00000034720)	tef (ENSXETG00000006333) #20	zc3h7b (ENSXETG00000006332) #21	rangap1 (ENSXETG00000006331) #22	XB5838993 [provisional:chad] (ENSXETG00000006330)	sgsm3 (ENSXETG00000006329) #33	adsl (ENSXETG00000006328) #34	tnrc6b (ENSXETG00000006327) #35	fam83f (ENSXETG00000034556) #36	grap2 (ENSXETG00000016137) #37	cacna1i (ENSXETG00000016133)	ENSXETG00000047066	atf4 (ENSXETG00000024806)	rps19bp1 (ENSXETG00000037536)	mief1 (ENSXETG00000036965)	ENSXETG00000043521	mgat3 (ENSXETG00000016128)	tab1 (ENSXETG00000006916)	ENSXETG00000035744
Leishan spiny toad	MODERN SPECIES	3	SLC35C2 (ENSLLEG00000008604)	ENSLLEG00000008553	ENSLLEG00000008505	ENSLLEG00000030937	ENSLLEG00000030927	ENSLLEG00000030917	UNC13D (ENSLLEG00000030901)	WBP2 (ENSLLEG00000030887)	ENSLLEG00000030880	MRPL38 (ENSLLEG00000030870)	FBF1 (ENSLLEG00000030830)	ACOX1 (ENSLLEG00000030774)	TEN1 (ENSLLEG00000030757)	ENSLLEG00000030707	SRP68 (ENSLLEG00000030673)	RANGAP1 (ENSLLEG00000030669) #22	GALR2 (ENSLLEG00000030667)	EXOC7 (ENSLLEG00000030493)	FOXJ1 (ENSLLEG00000030436)	ENSLLEG00000030426	UBALD2 (ENSLLEG00000030416)	ENSLLEG00000030411	ENSLLEG00000030397	SPHK1 (ENSLLEG00000030392)	UBE2O (ENSLLEG00000030369)	ENSLLEG00000030360	ENSLLEG00000030356	ENSLLEG00000030349	ENSLLEG00000030343	ENSLLEG00000030336	ENSLLEG00000030334
Coelacanth	MODERN SPECIES	967	HEBP1 (ENSLACG00000008973)	FMC1 (ENSLACG00000009208)	UBN2 (ENSLACG00000009631)	TTC26 (ENSLACG00000010210)	XRCC6 (ENSLACG00000010590) #12	DESI1 (ENSLACG00000022464) #13	PMM1 (ENSLACG00000011148) #14	ENSLACG00000022147	CSDC2 (ENSLACG00000011551) #15	POLR3H (ENSLACG00000011734) #16	ACO2 (ENSLACG00000011854) #17	PHF5A (ENSLACG00000012094) #18	TOB2 (ENSLACG00000012403) #19	TEF (ENSLACG00000012701) #20	ZC3H7B (ENSLACG00000013040) #21	RANGAP1 (ENSLACG00000013448) #22	ENSLACG00000013661	CHADL (ENSLACG00000013881) #23
Actinopterygii	ANCESTRAL SPECIES	269								ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00390000004383 #16	ENSGT00940000154892 #17	ENSGT00390000018518 #18	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000154464.b #23	ENSGT00940000153840.a.b #24	ENSGT00940000155497 #25	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27
Neopterygii	ANCESTRAL SPECIES	121	ENSGT00940000158046	ENSGT00940000163472	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A	ENSGT00940000155955.C	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578 #20	ENSGT00390000018542.a #21	ENSGT00440000039203 #22	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365	ENSGT00390000009228.b	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	47	ENSGT01030000235186	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00730000111100.a.a #13	ENSGT00940000163663.A.a	ENSGT00950000182979.a.a.a.a ##32	ENSGT00920000149129 #30
Clupeocephala	ANCESTRAL SPECIES	83	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000161934	ENSGT00940000153137.b	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00650000094704	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13
Euteleosteomorpha	ANCESTRAL SPECIES	45	ENSGT00940000153536.a.a.a.a	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000153137.b	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00650000094704	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32
Protacanthopterygii	ANCESTRAL SPECIES	4	ENSGT00940000153861.b.a	ENSGT00940000153536.a.a.a.a	ENSGT00940000155813.i.b #35	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000153137.b	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000000022.b.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00650000094704	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT00390000014681.r	ENSGT00940000157839	ENSGT00390000016123	ENSGT00390000018570.a.a.a	ENSGT01100000263520.a.a.a.b.a.b
Salmoninae	ANCESTRAL SPECIES	147	ENSGT00940000153536.a.a.a.a.e	ENSGT00940000153536.a.a.b	ENSGT00940000155813.i.b.f #35	ENSGT00940000160068.a.b.d	ENSGT00940000158369.f	ENSGT00390000018509.b.d	ENSGT00940000153137.b.b	ENSGT00530000063509.A.h	ENSGT00940000167326.a	ENSGT00940000155955.C.i.b.d	ENSGT00390000000022.b.b.b #15	ENSGT00940000154892.m.b.d #17	ENSGT00390000018518.hb.b #18	ENSGT00940000156578.a.b.e #20	ENSGT00390000018542.a.a.f.b #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b.d.a.a #24	ENSGT00940000153840.a.b.c #24	ENSGT00940000155497.a.b.f #25	ENSGT00940000158365.f.a.e	ENSGT00390000009228.b.d	ENSGT00650000094704	ENSGT00940000153239.B.f #12	ENSGT00730000111100.a.b.b #13	ENSGT00940000163663.A.b.e
Salmoninae_a	ANCESTRAL SPECIES	16	ENSGT00940000153536.a.a.a.a.e	ENSGT00940000155813.i.b.f #35	ENSGT01010000226722	ENSGT00940000160068.a.b.d	ENSGT00940000158369.f	ENSGT00390000018509.b.d	ENSGT00940000153137.b.b	ENSGT00530000063509.A.h	ENSGT00940000167326.a	ENSGT00940000155955.C.i.b.d	ENSGT00390000000022.b.b.b #15	ENSGT00940000154892.m.b.d #17	ENSGT00390000018518.hb.b #18	ENSGT00940000156578.a.b.e #20	ENSGT00390000018542.a.a.f.b #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b.d.a.a #24	ENSGT00940000155497.a.b.f #25	ENSGT00940000158365.f.a.e	ENSGT00390000009228.b.d	ENSGT00650000094704	ENSGT00940000153239.B.f #12	ENSGT00730000111100.a.b.b #13	ENSGT00940000163663.A.b.e	ENSGT00950000182979.a.a.a.b.d ##32	ENSGT00390000014681.r	ENSGT00940000157839.h	ENSGT00390000016123.d	ENSGT00390000018570.a.a.a.f	ENSGT01100000263556.b.a.b
Salmo	ANCESTRAL SPECIES	23	ENSGT00940000153536.a.a.a.a.e	ENSGT00940000155813.i.b.f #35	ENSGT01010000226722	ENSGT00940000160068.a.b.d	ENSGT00940000158369.f	ENSGT00390000018509.b.d	ENSGT00940000153137.b.b	ENSGT00530000063509.A.h	ENSGT00940000167326.a	ENSGT00940000155955.C.i.b.d	ENSGT00390000000022.b.b.b #15	ENSGT00940000154892.m.b.d #17	ENSGT00390000018518.hb.b #18	ENSGT00940000156578.a.b.e #20	ENSGT00390000018542.a.a.f.b #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b.c #24	ENSGT00940000155497.a.b.f #25	ENSGT00940000158365.f.a.e	ENSGT00390000009228.b.d	ENSGT00650000094704	ENSGT00940000153239.B.f #12	ENSGT00730000111100.a.b.b #13	ENSGT00940000163663.A.b.e	ENSGT00950000182979.a.a.a.b.d ##32	ENSGT00390000014681.r	ENSGT00940000157839.h	ENSGT00390000016123.d	ENSGT00390000018570.a.a.a.f	ENSGT00400000022326.b.a.b.a.b.a.a.a
Atlantic salmon	MODERN SPECIES		csnk1e (ENSSSAG00000105357)	ENSSSAG00000003419 #35	ENSSSAG00000099860	ENSSSAG00000121794	ENSSSAG00000003294	HAP28 (ENSSSAG00000003264)	cby1 (ENSSSAG00000116184)	ENSSSAG00000002830	ENSSSAG00000002780	ENSSSAG00000002491	csdc2a (ENSSSAG00000002399) #15	aco2 (ENSSSAG00000002315) #17	PHF5A (ENSSSAG00000002272) #18	tef (ENSSSAG00000002242) #20	ZC3H7B (ENSSSAG00000002171) #21	rangap1b (ENSSSAG00000002137) #22	chadlb (ENSSSAG00000002125)	l3mbtl2 (ENSSSAG00000001922) #24	ENSSSAG00000001794 #25	ENSSSAG00000118777	josd1 (ENSSSAG00000115290)	ENSSSAG00000105775	xrcc6 (ENSSSAG00000001692) #12	desi1b (ENSSSAG00000090604) #13	ENSSSAG00000091473	ENSSSAG00000001654 ##32	eef2k (ENSSSAG00000001615)	ENSSSAG00000088707	ENSSSAG00000001561	CDR2 (ENSSSAG00000088344)	ENSSSAG00000092741
River trout	MODERN SPECIES	9	csnk1e (ENSSTUG00000037043)	ENSSTUG00000037024 #35	ENSSTUG00000037001	ENSSTUG00000036995	SH3BP1 (ENSSTUG00000036926)	pdap1a (ENSSTUG00000036911)	cby1 (ENSSTUG00000036903)	PLBD1 (ENSSTUG00000036378)	ENSSTUG00000036305	GUCY2C (ENSSTUG00000035978)	CSDC2 (ENSSTUG00000035962) #15	aco2 (ENSSTUG00000034674) #17	phf5a (ENSSTUG00000034623) #18	tefa (ENSSTUG00000034592) #20	ZC3H7B (ENSSTUG00000034512) #21	rangap1b (ENSSTUG00000034462) #22	chadlb (ENSSTUG00000034453)	l3mbtl2 (ENSSTUG00000034401) #24	EP300 (ENSSTUG00000033907) #25	ENSSTUG00000033872	josd1 (ENSSTUG00000033853)	ENSSTUG00000033810	ENSSTUG00000033802	xrcc6 (ENSSTUG00000033443) #12	desi1b (ENSSTUG00000033425) #13	mrtfab (ENSSTUG00000033398) ##32	ENSSTUG00000033391	tha1 (ENSSTUG00000033376)	eef2k (ENSSTUG00000033337)	polr3e (ENSSTUG00000032076)	CDR2 (ENSSTUG00000032030)
Oncorhynchus	ANCESTRAL SPECIES	17	ENSGT00940000153861.b.a.h	ENSGT00940000153536.a.a.a.a.e	ENSGT00940000155813.i.b.f.a #35	ENSGT01010000226722	ENSGT00940000160068.a.b.d	ENSGT00940000158369.f	ENSGT00390000018509.b.d	ENSGT00530000063509.A.h	ENSGT00940000167326.a	ENSGT00940000155955.C.i.b.d	ENSGT00390000000022.b.b.b #15	ENSGT00940000154892.m.b.d #17	ENSGT00390000018518.hb.b #18	ENSGT00940000156578.a.b.e #20	ENSGT00390000018542.a.a.f.b #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b.d.a.a #24	ENSGT00940000155497.a.b.f #25	ENSGT00940000158365.f.a.e	ENSGT00390000009228.b.d	ENSGT00650000094704	ENSGT00940000153239.B.f #12	ENSGT00730000111100.a.b.b #13	ENSGT00940000163663.A.b.e	ENSGT00950000182979.a.a.a.b.d ##32	ENSGT00390000014681.r	ENSGT00940000157839.h	ENSGT00390000016123.d	ENSGT00390000018570.a.a.a.f	ENSGT01100000263556.b.a.b
Oncorhynchus_a	ANCESTRAL SPECIES	13	ENSGT00940000153536.a.a.a.a.e	ENSGT00940000155813.i.b.f.a #35	ENSGT01010000226722	ENSGT00940000160068.a.b.d	ENSGT00940000158369.f	ENSGT00390000018509.b.d	ENSGT01010000229564	ENSGT00530000063509.A.h	ENSGT00940000167326.a	ENSGT00940000155955.C.i.b.d	ENSGT00390000000022.b.b.b #15	ENSGT00940000154892.m.b.d #17	ENSGT00390000018518.hb.b #18	ENSGT00940000156578.a.b.e #20	ENSGT00390000018542.a.a.f.b #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b.d.a.a #24	ENSGT00940000155497.a.b.f #25	ENSGT00940000158365.f.a.e	ENSGT00390000009228.b.d	ENSGT00650000094704	ENSGT00940000153239.B.f #12	ENSGT00730000111100.a.b.b #13	ENSGT00940000163663.A.b.e	ENSGT00950000182979.a.a.a.b.d ##32	ENSGT00390000014681.r	ENSGT00940000157839.h	ENSGT00390000016123.d	ENSGT00390000018570.a.a.a.f	ENSGT01100000263556.b.a.b
Coho salmon	MODERN SPECIES	2	csnk1e (ENSOKIG00005011762)	ENSOKIG00005011799 #35	ENSOKIG00005011850	ENSOKIG00005011872	ENSOKIG00005011924	pdap1a (ENSOKIG00005012108)	ENSOKIG00005001953	PLBD1 (ENSOKIG00005002045)	ENSOKIG00005002241	ENSOKIG00005002499	CSDC2 (ENSOKIG00005003568) #15	aco2 (ENSOKIG00005003655) #17	phf5a (ENSOKIG00005004637) #18	tefa (ENSOKIG00005004663) #20	ZC3H7B (ENSOKIG00005004689) #21	rangap1b (ENSOKIG00005004716) #22	chadlb (ENSOKIG00005004813)	l3mbtl2 (ENSOKIG00005004839) #24	EP300 (ENSOKIG00005005140) #25	ENSOKIG00005006878	josd1 (ENSOKIG00005006888)	ENSOKIG00005006896	xrcc6 (ENSOKIG00005006924) #12	desi1b (ENSOKIG00005007029) #13	ENSOKIG00005007041	ENSOKIG00005007067 ##32	tha1 (ENSOKIG00005007124)	eef2k (ENSOKIG00005007171)	POLR3E (ENSOKIG00005007240)	ENSOKIG00005007282	CDR2 (ENSOKIG00005007306)
Chinook salmon	MODERN SPECIES		csnk1e (ENSOTSG00005024010)	ENSOTSG00005023040 #35	ENSOTSG00005023039	ENSOTSG00005023038	ENSOTSG00005023033	pdap1a (ENSOTSG00005023031)	ENSOTSG00005023029	PLBD1 (ENSOTSG00005021728)	ENSOTSG00005021719	ENSOTSG00005017639	CSDC2 (ENSOTSG00005017611) #15	aco2 (ENSOTSG00005014323) #17	phf5a (ENSOTSG00005014318) #18	tefa (ENSOTSG00005014317) #20	ZC3H7B (ENSOTSG00005014316) #21	RANGAP1 (ENSOTSG00005014308) #22	ENSOTSG00005014305	ENSOTSG00005014303	chadlb (ENSOTSG00005014302)	l3mbtl2 (ENSOTSG00005014144) #24	EP300 (ENSOTSG00005014113) #25	ENSOTSG00005014103	josd1 (ENSOTSG00005014101)	xrcc6 (ENSOTSG00005014078) #12	desi1b (ENSOTSG00005014077) #13	ENSOTSG00005014074	mrtfab (ENSOTSG00005014071) ##32	ENSOTSG00005014069 ##32	tha1 (ENSOTSG00005014068)	eef2k (ENSOTSG00005014062)	polr3e (ENSOTSG00005014038)
Rainbow trout	MODERN SPECIES	15	ENSOMYG00000045838 #35	ENSOMYG00000064418	ENSOMYG00000045804	pdap1a (ENSOMYG00000045795)	ENSOMYG00000045667	ENSOMYG00000045631	ENSOMYG00000045626	ENSOMYG00000045501	ENSOMYG00000069439	ENSOMYG00000065029	ENSOMYG00000045437 #15	aco2 (ENSOMYG00000044954) #17	phf5a (ENSOMYG00000044879) #18	tefa (ENSOMYG00000044872) #20	ZC3H7B (ENSOMYG00000044864) #21	rangap1b (ENSOMYG00000044802) #22	chadlb (ENSOMYG00000044762)	l3mbtl2 (ENSOMYG00000044742) #24	ENSOMYG00000044715 #25	ENSOMYG00000044706	josd1 (ENSOMYG00000044704)	xrcc6 (ENSOMYG00000044661) #12	desi1b (ENSOMYG00000044645) #13	ENSOMYG00000073573	mrtfab (ENSOMYG00000044624) ##32	ENSOMYG00000044616	EEF2K (ENSOMYG00000044604)	ENSOMYG00000044584	ENSOMYG00000044581	CDR2 (ENSOMYG00000044576)	ENSOMYG00000048942
Huchen	MODERN SPECIES	506	tmem184ba (ENSHHUG00000012414)	CSNK1E (ENSHHUG00000012417)	ENSHHUG00000012461 #35	ENSHHUG00000012489	ENSHHUG00000012495	pdap1a (ENSHHUG00000012521)	PLBD1 (ENSHHUG00000012535)	ENSHHUG00000012581	GUCY2C (ENSHHUG00000012612)	ENSHHUG00000012624	CSDC2 (ENSHHUG00000012640) #15	aco2 (ENSHHUG00000012645) #17	phf5a (ENSHHUG00000012665) #18	tefa (ENSHHUG00000012668) #20	ZC3H7B (ENSHHUG00000012672) #21	rangap1b (ENSHHUG00000012688) #22	chadlb (ENSHHUG00000012910)	l3mbtl2 (ENSHHUG00000012935) #24
Northern pike	MODERN SPECIES	4	tmem184ba (ENSELUG00000019376)	CSNK1E (ENSELUG00000019385)	ENSELUG00000019468 #35	ENSELUG00000000853	ENSELUG00000019508	pdap1a (ENSELUG00000019533)	cby1 (ENSELUG00000019580)	PLBD1 (ENSELUG00000019605)	ENSELUG00000019633	ENSELUG00000019680	CSDC2 (ENSELUG00000019696) #15	aco2 (ENSELUG00000019769) #17	phf5a (ENSELUG00000019796) #18	tefa (ENSELUG00000019815) #20	ZC3H7B (ENSELUG00000019891) #21	rangap1b (ENSELUG00000019942) #22	chadlb (ENSELUG00000019959)	l3mbtl2 (ENSELUG00000019986) #24	EP300 (ENSELUG00000020189) #25	ENSELUG00000020028	josd1 (ENSELUG00000020267)	xrcc6 (ENSELUG00000020301) #12	desi1b (ENSELUG00000020313) #13	ENSELUG00000020324	mrtfab (ENSELUG00000020339) ##32	tha1 (ENSELUG00000020367)	eef2k (ENSELUG00000000906)	polr3e (ENSELUG00000020683)	CDR2 (ENSELUG00000033724)	ENSELUG00000028258	ENSELUG00000020703
Acanthomorphata	ANCESTRAL SPECIES	23	ENSGT00940000153536.a.a.a.a	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000153137.b	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00650000094704	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32
Euacanthomorphacea	ANCESTRAL SPECIES	6	ENSGT00940000153536.a.a.a.a	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000153137.b	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00650000094704	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32
Percomorphaceae	ANCESTRAL SPECIES	5	ENSGT00940000153536.a.a.a.a	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000153137.b	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT01070000254302	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00650000094704	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT00390000015750	ENSGT00390000011343	ENSGT00940000155032.l	ENSGT00390000015583
Tiger tail seahorse	MODERN SPECIES	24	ENSHCOG00000009532	gdf10b (ENSHCOG00000009578)	gdf2 (ENSHCOG00000009592)	rbp3 (ENSHCOG00000009596)	ENSHCOG00000009630	ubtd1b (ENSHCOG00000009648)	mms19 (ENSHCOG00000009664)	zdhhc16b (ENSHCOG00000009671)	vps35l (ENSHCOG00000009736)	get4 (ENSHCOG00000009762)	mrtfab (ENSHCOG00000009798) ##32	xrcc6 (ENSHCOG00000009821) #12	ENSHCOG00000009830	josd1 (ENSHCOG00000009852)	ZC3H7B (ENSHCOG00000009865) #21	rangap1b (ENSHCOG00000009890) #22	chadlb (ENSHCOG00000009959)	ENSHCOG00000009974	l3mbtl2 (ENSHCOG00000010008) #24	EP300 (ENSHCOG00000010078) #25	CBX7 (ENSHCOG00000010097)	tefa (ENSHCOG00000010116) #20	phf5a (ENSHCOG00000010129) #18	aco2 (ENSHCOG00000010190) #17	csdc2a (ENSHCOG00000010202) #15	ENSHCOG00000010290	ENSHCOG00000010314	PLBD1 (ENSHCOG00000010381)	cby1 (ENSHCOG00000010390)	pdap1a (ENSHCOG00000000695)	ENSHCOG00000010426
Percomorphaceae_B	ANCESTRAL SPECIES	4	ENSGT00940000153536.a.a.a.a	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000153137.b	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT01070000254302	ENSGT00990000204107	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00650000094704	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT00390000015750	ENSGT00390000011343	ENSGT00940000155032.l
Percomorphaceae_C	ANCESTRAL SPECIES	14	ENSGT00940000153536.a.a.a.a	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000153137.b	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT01070000254302	ENSGT00990000204107	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00650000094704	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT00390000015750	ENSGT00390000011343	ENSGT00940000155032.l
Percomorphaceae_D	ANCESTRAL SPECIES	13	ENSGT00940000153536.a.a.a.a	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000153137.b	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT01070000254302	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00650000094704	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT00390000015750	ENSGT00390000011343	ENSGT00940000155032.l	ENSGT00390000015583
Anabantaria	ANCESTRAL SPECIES	18	ENSGT00940000153536.a.a.a.a	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000153137.b	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00650000094704	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT00390000015750	ENSGT00390000011343	ENSGT00940000155032.l	ENSGT00390000015583	ENSGT00940000158630.g.a
Anabantoidei	ANCESTRAL SPECIES	10	ENSGT00940000153536.a.a.a.a	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000153137.b	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00650000094704	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT00390000015750	ENSGT00390000011343	ENSGT00940000155032.l	ENSGT00390000015583	ENSGT00940000158630.g.a
Climbing perch	DUPLICATION
Climbing perch	MODERN SPECIES	10	mapk8b (ENSATEG00000005885)	ENSATEG00000005950	gdf10b (ENSATEG00000005975)	gdf2 (ENSATEG00000005979)	RBP3 (ENSATEG00000005990)	ENSATEG00000006091	ubtd1b (ENSATEG00000027660)	zdhhc16b (ENSATEG00000006217)	ENSATEG00000006234	ENSATEG00000006353	aco2 (ENSATEG00000030073) #17	phf5a (ENSATEG00000006506) #18	tefa (ENSATEG00000006521) #20	ZC3H7B (ENSATEG00000006539) #21	rangap1b (ENSATEG00000006586) #22	rangap1b (ENSATEG00000006838) #22	chadlb (ENSATEG00000006910)	l3mbtl2 (ENSATEG00000006919) #24	ENSATEG00000006944 #25	ENSATEG00000027992	josd1 (ENSATEG00000007105)	ENSATEG00000007109	xrcc6 (ENSATEG00000007119) #12	desi1b (ENSATEG00000026392) #13	mrtfab (ENSATEG00000007179) ##32	ENSATEG00000026132	ENSATEG00000029855 ##32	ENSATEG00000025673	csdc2a (ENSATEG00000026239) #15	ENSATEG00000007345	ENSATEG00000007442
Climbing perch	MODERN SPECIES	10	ARHGAP22 (ENSATEG00000005797)	mapk8b (ENSATEG00000005885)	ENSATEG00000005950	gdf10b (ENSATEG00000005975)	gdf2 (ENSATEG00000005979)	RBP3 (ENSATEG00000005990)	ENSATEG00000006091	ubtd1b (ENSATEG00000027660)	zdhhc16b (ENSATEG00000006217)	ENSATEG00000006234	ENSATEG00000006353	aco2 (ENSATEG00000030073) #17	phf5a (ENSATEG00000006506) #18	tefa (ENSATEG00000006521) #20	ZC3H7B (ENSATEG00000006539) #21	rangap1b (ENSATEG00000006586) #22	rangap1b (ENSATEG00000006838) #22	chadlb (ENSATEG00000006910)	l3mbtl2 (ENSATEG00000006919) #24	ENSATEG00000006944 #25	ENSATEG00000027992	josd1 (ENSATEG00000007105)	ENSATEG00000007109	xrcc6 (ENSATEG00000007119) #12	desi1b (ENSATEG00000026392) #13	mrtfab (ENSATEG00000007179) ##32	ENSATEG00000026132	ENSATEG00000029855 ##32	ENSATEG00000025673	csdc2a (ENSATEG00000026239) #15	ENSATEG00000007345
Siamese fighting fish	MODERN SPECIES	9	ENSBSLG00000020071	ENSBSLG00000020095	ENSBSLG00000021049	ENSBSLG00000021084	pdap1a (ENSBSLG00000021168)	cby1 (ENSBSLG00000021302)	PLBD1 (ENSBSLG00000021324)	cby1 (ENSBSLG00000021404)	PLBD1 (ENSBSLG00000021424)	ENSBSLG00000021437	csdc2a (ENSBSLG00000021611) #15	aco2 (ENSBSLG00000021620) #17	phf5a (ENSBSLG00000021671) #18	tefa (ENSBSLG00000021678) #20	ENSBSLG00000021685 #21	rangap1b (ENSBSLG00000021844) #22	ENSBSLG00000021915	ENSBSLG00000021931	chadlb (ENSBSLG00000021966)	l3mbtl2 (ENSBSLG00000021995) #24	EP300 (ENSBSLG00000022112) #25	ENSBSLG00000022769	josd1 (ENSBSLG00000022770)	ENSBSLG00000022771	xrcc6 (ENSBSLG00000022780) #12	desi1b (ENSBSLG00000023110) #13	ENSBSLG00000023118	mrtfab (ENSBSLG00000023133) ##32	get4 (ENSBSLG00000023194)	vps35l (ENSBSLG00000023260)	zdhhc16b (ENSBSLG00000023411)
Zig-zag eel	MODERN SPECIES	10	ENSMAMG00000026408 #35	ENSMAMG00000004162 #35	ENSMAMG00000004134	ENSMAMG00000004122	ENSMAMG00000004098	pdap1a (ENSMAMG00000024443)	cby1 (ENSMAMG00000004028)	ENSMAMG00000003943	ENSMAMG00000024757	ENSMAMG00000003866	csdc2a (ENSMAMG00000003854) #15	aco2 (ENSMAMG00000003762) #17	phf5a (ENSMAMG00000003744) #18	tefa (ENSMAMG00000003725) #20	ZC3H7B (ENSMAMG00000003650) #21	rangap1b (ENSMAMG00000003552) #22	chadlb (ENSMAMG00000003543)	ENSMAMG00000024639	l3mbtl2 (ENSMAMG00000003515) #24	ENSMAMG00000003489 #25	ENSMAMG00000003463	josd1 (ENSMAMG00000003443)	ENSMAMG00000003420	xrcc6 (ENSMAMG00000003368) #12	desi1b (ENSMAMG00000027199) #13	ENSMAMG00000003315	ENSMAMG00000003242 ##32	ENSMAMG00000003207	ENSMAMG00000003184	zdhhc16b (ENSMAMG00000003147)	mms19 (ENSMAMG00000003115)
Carangaria	ANCESTRAL SPECIES	13	ENSGT00940000153536.a.a.a.a	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000153137.b	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT01070000254302	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00650000094704	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT00390000015750	ENSGT00390000011343	ENSGT00940000155032.l	ENSGT00390000015583
Pleuronectoidei	ANCESTRAL SPECIES	6	ENSGT00940000153536.a.a.a.a	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000153137.b	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00650000094704	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT00390000015750	ENSGT00390000011343	ENSGT00940000155032.l	ENSGT00390000015583	ENSGT00940000158630.g.a
Tongue sole	MODERN SPECIES	18	LRRC18 (ENSCSEG00000000361)	ENSCSEG00000000358	ogfod3 (ENSCSEG00000000351)	hexdc (ENSCSEG00000000330)	cybc1 (ENSCSEG00000000320)	narf (ENSCSEG00000000317)	FDXR (ENSCSEG00000020526)	ENSCSEG00000020524	mrpl38 (ENSCSEG00000020520)	ENSCSEG00000020518	wbp2 (ENSCSEG00000020507)	aco2 (ENSCSEG00000020501) #17	phf5a (ENSCSEG00000020499) #18	tefa (ENSCSEG00000020497) #20	ZC3H7B (ENSCSEG00000020490) #21	rangap1b (ENSCSEG00000020486) #22	chadlb (ENSCSEG00000020482)	l3mbtl2 (ENSCSEG00000020478) #24	ENSCSEG00000020474	EP300 (ENSCSEG00000020452) #25	ENSCSEG00000020449	josd1 (ENSCSEG00000020444)	ENSCSEG00000020440	xrcc6 (ENSCSEG00000020434) #12	desi1b (ENSCSEG00000020425) #13	ENSCSEG00000020421	ENSCSEG00000020419 ##32	mrtfab (ENSCSEG00000020403) ##32	get4 (ENSCSEG00000020396)	vps35l (ENSCSEG00000020390)	zdhhc16b (ENSCSEG00000020386)
Turbot	MODERN SPECIES	9	csnk1e (ENSSMAG00000007523)	ENSSMAG00000007462 #35	ENSSMAG00000007450	ENSSMAG00000007439	ENSSMAG00000007424	pdap1a (ENSSMAG00000007399)	cby1 (ENSSMAG00000007381)	ENSSMAG00000007355	ENSSMAG00000007319	ENSSMAG00000007175	csdc2a (ENSSMAG00000007134) #15	aco2 (ENSSMAG00000007063) #17	phf5a (ENSSMAG00000007054) #18	tefa (ENSSMAG00000007034) #20	ZC3H7B (ENSSMAG00000006961) #21	rangap1b (ENSSMAG00000006741) #22	chadlb (ENSSMAG00000006710)	l3mbtl2 (ENSSMAG00000006666) #24	ENSSMAG00000006608 #25	ENSSMAG00000006575	josd1 (ENSSMAG00000023674)	ENSSMAG00000033260	xrcc6 (ENSSMAG00000006496) #12	desi1b (ENSSMAG00000006467) #13	ENSSMAG00000006443	ENSSMAG00000031000 ##32	ENSSMAG00000006357	ENSSMAG00000006283	zdhhc16b (ENSSMAG00000006209)	mms19 (ENSSMAG00000005975)	ubtd1b (ENSSMAG00000005951)
Carangaria_A	ANCESTRAL SPECIES	5	ENSGT00940000153536.a.a.a.a	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000153137.b	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT01070000254302	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00650000094704	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT00390000015750	ENSGT00390000011343	ENSGT00940000155032.l	ENSGT00390000015583
Barramundi perch	MODERN SPECIES	285	tmem184ba (ENSLCAG00010000451)	csnk1e (ENSLCAG00010000432)	ENSLCAG00010000422 #35	ENSLCAG00010000408 #35	ENSLCAG00010000403	ENSLCAG00010000397	cby1 (ENSLCAG00010000387)	ENSLCAG00010000272	ENSLCAG00010000218	ENSLCAG00010000198	csdc2a (ENSLCAG00010000182) #15	aco2 (ENSLCAG00010000167) #17	phf5a (ENSLCAG00010026552) #18	tefa (ENSLCAG00010026549) #20	ZC3H7B (ENSLCAG00010026542) #21	rangap1b (ENSLCAG00010026538) #22	chadlb (ENSLCAG00010026533)	l3mbtl2 (ENSLCAG00010026525) #24	ENSLCAG00010026520	CBX7 (ENSLCAG00010026504)	josd1 (ENSLCAG00010026501)	xrcc6 (ENSLCAG00010026491) #12	ENSLCAG00010026484	desi1b (ENSLCAG00010026482) #13
Seriola	ANCESTRAL SPECIES	1	ENSGT00940000153536.a.a.a.a	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000153137.b	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT01070000254302	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00650000094704	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT00390000015750	ENSGT00390000011343	ENSGT00940000155032.l	ENSGT00390000015583
Greater amberjack	MODERN SPECIES	27	csnk1e (ENSSDUG00000008258)	ENSSDUG00000008226 #35	ENSSDUG00000008207	ENSSDUG00000008199	ENSSDUG00000008185	pdap1a (ENSSDUG00000008170)	cby1 (ENSSDUG00000008154)	PLBD1 (ENSSDUG00000008141)	ENSSDUG00000008135	ENSSDUG00000008101	csdc2a (ENSSDUG00000008082) #15	aco2 (ENSSDUG00000008036) #17	phf5a (ENSSDUG00000008019) #18	tefa (ENSSDUG00000007978) #20	ZC3H7B (ENSSDUG00000007927) #21	rangap1b (ENSSDUG00000007886) #22	chadlb (ENSSDUG00000007853)	ENSSDUG00000007839	l3mbtl2 (ENSSDUG00000007790) #24	EP300 (ENSSDUG00000007604) #25	ENSSDUG00000007573	josd1 (ENSSDUG00000007560)	xrcc6 (ENSSDUG00000007542) #12	desi1b (ENSSDUG00000007525) #13	ENSSDUG00000007510	mrtfab (ENSSDUG00000007393) ##32	get4 (ENSSDUG00000007358)	vps35l (ENSSDUG00000007265)	zdhhc16b (ENSSDUG00000007237)	mms19 (ENSSDUG00000007129)	ubtd1b (ENSSDUG00000007100)
Yellowtail amberjack	MODERN SPECIES	3252	csnk1e (ENSSLDG00000008913)	ENSSLDG00000008945 #35	ENSSLDG00000008967	ENSSLDG00000008976	ENSSLDG00000008996	pdap1a (ENSSLDG00000009017)	cby1 (ENSSLDG00000009036)	PLBD1 (ENSSLDG00000009056)	ENSSLDG00000009137	ENSSLDG00000009203	csdc2a (ENSSLDG00000009512) #15	aco2 (ENSSLDG00000009538) #17	phf5a (ENSSLDG00000009619) #18	tefa (ENSSLDG00000009635) #20	ZC3H7B (ENSSLDG00000009664) #21	rangap1b (ENSSLDG00000009736) #22	chadlb (ENSSLDG00000009774)	l3mbtl2 (ENSSLDG00000009810) #24	EP300 (ENSSLDG00000009870) #25	ENSSLDG00000009911	josd1 (ENSSLDG00000009941)	ENSSLDG00000009956	xrcc6 (ENSSLDG00000009974) #12	desi1b (ENSSLDG00000009991) #13	ENSSLDG00000010010	ENSSLDG00000010024 ##32	ENSSLDG00000010037 ##32	ENSSLDG00000010052	get4 (ENSSLDG00000010076)	vps35l (ENSSLDG00000010117)	zdhhc16b (ENSSLDG00000010182)
Eupercaria	ANCESTRAL SPECIES	10	ENSGT00940000153536.a.a.a.a	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000153137.b	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00650000094704	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT00390000015750	ENSGT00390000011343	ENSGT00940000155032.l	ENSGT00390000015583	ENSGT00940000158630.g.a
Tetraodontidae	ANCESTRAL SPECIES		ENSGT00940000153861.b.a	ENSGT00940000153536.a.a.a.a	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000153137.b	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00940000153239.B #12	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT00390000015750	ENSGT00390000011343	ENSGT00940000155032.l	ENSGT00390000015583	ENSGT00940000158630.g.a	ENSGT00940000157727.x.a	ENSGT00390000014726.c.b
Fugu	MODERN SPECIES		csnk1e (ENSTRUG00000016982)	ENSTRUG00000021399 #35	ENSTRUG00000016989	ENSTRUG00000021426	ENSTRUG00000016993	pdap1a (ENSTRUG00000025459)	ENSTRUG00000017000	cby1 (ENSTRUG00000017001)	ENSTRUG00000022094	ENSTRUG00000017007	csdc2a (ENSTRUG00000028048) #15	aco2 (ENSTRUG00000017021) #17	phf5a (ENSTRUG00000030258) #18	tefa (ENSTRUG00000022293) #20	ZC3H7B (ENSTRUG00000017030) #21	rangap1b (ENSTRUG00000017035) #22	chadlb (ENSTRUG00000017043)	l3mbtl2 (ENSTRUG00000017044) #24	EP300 (ENSTRUG00000017051) #25	ENSTRUG00000033494	josd1 (ENSTRUG00000017067)	xrcc6 (ENSTRUG00000017070) #12	ENSTRUG00000023990	mrtfab (ENSTRUG00000031201) ##32	get4 (ENSTRUG00000017084)	vps35l (ENSTRUG00000017090)	zdhhc16b (ENSTRUG00000017097)	mms19 (ENSTRUG00000017103)	ubtd1b (ENSTRUG00000022232)	ENSTRUG00000017110	rbp3 (ENSTRUG00000020642)
Tetraodon	MODERN SPECIES	13	dmc1 (ENSTNIG00000012927)	tomm22 (ENSTNIG00000012928)	maff (ENSTNIG00000001100)	tmem184ba (ENSTNIG00000012929)	ENSTNIG00000012930 #35	ENSTNIG00000012932	SH3BP1 (ENSTNIG00000012933)	cby1 (ENSTNIG00000012934)	ENSTNIG00000012935	ENSTNIG00000012936	csdc2a (ENSTNIG00000012937) #15	aco2 (ENSTNIG00000012938) #17	phf5a (ENSTNIG00000012939) #18	tefa (ENSTNIG00000012940) #20	ZC3H7B (ENSTNIG00000012941) #21	rangap1b (ENSTNIG00000002397) #22	chadlb (ENSTNIG00000012942)	l3mbtl2 (ENSTNIG00000012943) #24	EP300 (ENSTNIG00000012944) #25	ENSTNIG00000012945	josd1 (ENSTNIG00000012946)	xrcc6 (ENSTNIG00000012947) #12	ENSTNIG00000001284	mrtfab (ENSTNIG00000012948) ##32	get4 (ENSTNIG00000004697)	vps35l (ENSTNIG00000004698)	zdhhc16b (ENSTNIG00000004699)	mms19 (ENSTNIG00000004700)	ubtd1b (ENSTNIG00000004701)	ENSTNIG00000004702	rbp3 (ENSTNIG00000004703)
Eupecaria_A	ANCESTRAL SPECIES	1	ENSGT00940000153536.a.a.a.a	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000153137.b	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00650000094704	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT00390000015750	ENSGT00390000011343	ENSGT00940000155032.l	ENSGT00390000015583	ENSGT00940000158630.g.a
Ballan wrasse	MODERN SPECIES	225	ENSLBEG00000001416 #35	ENSLBEG00000001471	ENSLBEG00000001487	ENSLBEG00000001514	pdap1a (ENSLBEG00000001543)	cby1 (ENSLBEG00000001581)	PLBD1 (ENSLBEG00000001605)	ENSLBEG00000001676	ENSLBEG00000001763	csdc2a (ENSLBEG00000002005) #15	aco2 (ENSLBEG00000002060) #17	phf5a (ENSLBEG00000002141) #18	tefa (ENSLBEG00000002171) #20	ZC3H7B (ENSLBEG00000002212) #21	ENSLBEG00000002272	rangap1b (ENSLBEG00000002303) #22	chadlb (ENSLBEG00000002434)	l3mbtl2 (ENSLBEG00000002456) #24	EP300 (ENSLBEG00000002487) #25	ENSLBEG00000002577	josd1 (ENSLBEG00000002624)	ENSLBEG00000002655	xrcc6 (ENSLBEG00000002691) #12	desi1b (ENSLBEG00000002733) #13	ENSLBEG00000002764	mrtfab (ENSLBEG00000002808) ##32
Eupecaria_B	ANCESTRAL SPECIES	3	ENSGT00940000153536.a.a.a.a	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000153137.b	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00650000094704	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT00390000015750	ENSGT00390000011343	ENSGT00940000155032.l	ENSGT00390000015583	ENSGT00940000158630.g.a
Eupecaria_C	ANCESTRAL SPECIES	1	ENSGT00940000153536.a.a.a.a	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000153137.b	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00650000094704	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT00390000015750	ENSGT00390000011343	ENSGT00940000155032.l	ENSGT00390000015583	ENSGT00940000158630.g.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	1	ENSGT00940000153861.b.a	ENSGT00940000153536.a.a.a.a	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000153137.b	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00650000094704	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT00390000015750	ENSGT00390000011343	ENSGT00940000155032.l	ENSGT00390000015583	ENSGT00940000158630.g.a
Large yellow croaker	MODERN SPECIES	488	maff (ENSLCRG00005006760)	tmem184ba (ENSLCRG00005006762)	ENSLCRG00005006851 #35	csnk1e (ENSLCRG00005006857)	ENSLCRG00005006885	ENSLCRG00005006889	ENSLCRG00005006892	pdap1a (ENSLCRG00005006893)	cby1 (ENSLCRG00005006895)	ENSLCRG00005006897	ENSLCRG00005006906	aco2 (ENSLCRG00005007240) #17	phf5a (ENSLCRG00005007856) #18	tefa (ENSLCRG00005007867) #20	ZC3H7B (ENSLCRG00005007872) #21	rangap1b (ENSLCRG00005007889) #22	chadlb (ENSLCRG00005007914)	l3mbtl2 (ENSLCRG00005007917) #24	ENSLCRG00005007921	EP300 (ENSLCRG00005007933) #25	ENSLCRG00005008682	josd1 (ENSLCRG00005008683)	ENSLCRG00005008685	xrcc6 (ENSLCRG00005008686) #12	desi1b (ENSLCRG00005008706) #13	ENSLCRG00005008707	mrtfab (ENSLCRG00005008710) ##32	get4 (ENSLCRG00005008718)	vps35l (ENSLCRG00005008733)	zdhhc16b (ENSLCRG00005008858)	mms19 (ENSLCRG00005008863)
European seabass	MODERN SPECIES	11	ENSDLAG00005020499	nptx2b (ENSDLAG00005020490)	tmem130 (ENSDLAG00005020473)	baiap2l1a (ENSDLAG00005020402)	ENSDLAG00005020318	bhlha15 (ENSDLAG00005033943)	ENSDLAG00005020303	pvalb3 (ENSDLAG00005020292)	ENSDLAG00005020252	ENSDLAG00005019682	CSDC2 (ENSDLAG00005033654) #15	aco2 (ENSDLAG00005019603) #17	phf5a (ENSDLAG00005019582) #18	tefa (ENSDLAG00005019578) #20	ZC3H7B (ENSDLAG00005019560) #21	rangap1b (ENSDLAG00005027546) #22	chadlb (ENSDLAG00005019521)	ENSDLAG00005019512	l3mbtl2 (ENSDLAG00005019488) #24	ENSDLAG00005019268 #25	ENSDLAG00005033106	josd1 (ENSDLAG00005033772)	xrcc6 (ENSDLAG00005019010) #12	desi1b (ENSDLAG00005026916) #13	ENSDLAG00005018987	ENSDLAG00005018943 ##32	ENSDLAG00005018874	ENSDLAG00005017644	zdhhc16b (ENSDLAG00005017597)	mms19 (ENSDLAG00005017304)	ubtd1b (ENSDLAG00005017291)
Gilthead seabream	MODERN SPECIES	12	csnk1e (ENSSAUG00010006920)	ENSSAUG00010006908 #35	ENSSAUG00010006898	ENSSAUG00010006894	ENSSAUG00010006889	pdap1a (ENSSAUG00010006886)	cby1 (ENSSAUG00010006885)	PLBD1 (ENSSAUG00010006533)	ENSSAUG00010006505	ENSSAUG00010003819	csdc2a (ENSSAUG00010003786) #15	aco2 (ENSSAUG00010003770) #17	phf5a (ENSSAUG00010003737) #18	tefa (ENSSAUG00010003722) #20	ZC3H7B (ENSSAUG00010003702) #21	rangap1b (ENSSAUG00010003677) #22	chadlb (ENSSAUG00010003657)	l3mbtl2 (ENSSAUG00010003551) #24	EP300 (ENSSAUG00010003472) #25	ENSSAUG00010003460	josd1 (ENSSAUG00010003448)	ENSSAUG00010003444	xrcc6 (ENSSAUG00010003319) #12	desi1b (ENSSAUG00010003304) #13	ENSSAUG00010003294	mrtfab (ENSSAUG00010003284) ##32	zdhhc16b (ENSSAUG00010003273)	ENSSAUG00010003265	vps35l (ENSSAUG00010002925)	get4 (ENSSAUG00010002741)	ENSSAUG00010002728
Perciformes	ANCESTRAL SPECIES	9	ENSGT00940000153536.a.a.a.a	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000153137.b	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00650000094704	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT00390000015750	ENSGT00390000011343	ENSGT00940000155032.l	ENSGT00390000015583	ENSGT00940000158630.g.a
Cottioidei	ANCESTRAL SPECIES	12	ENSGT00940000153536.a.a.a.a	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000153137.b	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00650000094704	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32
Lumpfish	MODERN SPECIES	10	zdhhc16b (ENSCLMG00005022311)	vps35l (ENSCLMG00005022320)	get4 (ENSCLMG00005022457)	ENSCLMG00005022465	ENSCLMG00005022470	pdap1a (ENSCLMG00005022477)	cby1 (ENSCLMG00005022478)	PLBD1 (ENSCLMG00005022480)	ENSCLMG00005022481	ENSCLMG00005022482	csdc2a (ENSCLMG00005022484) #15	aco2 (ENSCLMG00005022485) #17	phf5a (ENSCLMG00005022544) #18	tefa (ENSCLMG00005022548) #20	ZC3H7B (ENSCLMG00005022550) #21	rangap1b (ENSCLMG00005022554) #22	chadlb (ENSCLMG00005022570)	l3mbtl2 (ENSCLMG00005022573) #24	EP300 (ENSCLMG00005022587) #25	ENSCLMG00005022647	josd1 (ENSCLMG00005022649)	ENSCLMG00005022650	xrcc6 (ENSCLMG00005022659) #12	desi1b (ENSCLMG00005022664) #13	ENSCLMG00005022665	mrtfab (ENSCLMG00005022667) ##32	ENSCLMG00005001388	ENSCLMG00005001407 #35	csnk1e (ENSCLMG00005001455)	tmem184ba (ENSCLMG00005001803)	maff (ENSCLMG00005001805)
Stickleback	MODERN SPECIES	5	csnk1e (ENSGACG00000004568)	ENSGACG00000004573 #35	ENSGACG00000004592	ENSGACG00000004597	ENSGACG00000004601	pdap1a (ENSGACG00000004617)	cby1 (ENSGACG00000004626)	PLBD1 (ENSGACG00000004637)	ENSGACG00000004643	ENSGACG00000004649	csdc2a (ENSGACG00000004665) #15	aco2 (ENSGACG00000004686) #17	phf5a (ENSGACG00000004777) #18	tefa (ENSGACG00000004793) #20	ZC3H7B (ENSGACG00000004799) #21	rangap1b (ENSGACG00000004810) #22	chadlb (ENSGACG00000004821)	l3mbtl2 (ENSGACG00000004829) #24	ENSGACG00000004832 #24	EP300 (ENSGACG00000004836) #25	ENSGACG00000004855	josd1 (ENSGACG00000004862)	ENSGACG00000004865	xrcc6 (ENSGACG00000004868) #12	desi1b (ENSGACG00000004894) #13	rbp3 (ENSGACG00000004900)	ENSGACG00000004906	ubtd1b (ENSGACG00000004908)	mms19 (ENSGACG00000004915)	zdhhc16b (ENSGACG00000004937)	vps35l (ENSGACG00000004948)
Perciformes_a	ANCESTRAL SPECIES	8	ENSGT00940000153536.a.a.a.a	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000153137.b	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b #24	ENSGT00990000204107	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00650000094704	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00940000163663.A.b	ENSGT00940000178257	ENSGT00950000182979.a.a.a.b ##32	ENSGT00390000015750	ENSGT00390000011343	ENSGT00940000155032.l	ENSGT00390000015583
Channel bull blenny	MODERN SPECIES	10	ENSCGOG00000012386 #35	ENSCGOG00000012384	ENSCGOG00000012383	ENSCGOG00000012267	pdap1a (ENSCGOG00000012257)	cby1 (ENSCGOG00000012251)	PLBD1 (ENSCGOG00000012213)	ENSCGOG00000012201	ENSCGOG00000012160	csdc2a (ENSCGOG00000012156) #15	aco2 (ENSCGOG00000011100) #17	phf5a (ENSCGOG00000011063) #18	tefa (ENSCGOG00000011060) #20	ENSCGOG00000011053 #21	ENSCGOG00000011046	rangap1b (ENSCGOG00000010980) #22	chadlb (ENSCGOG00000010977)	ENSCGOG00000010976	ENSCGOG00000010974	ENSCGOG00000010972	ENSCGOG00000010969	nptx2b (ENSCGOG00000010960)	ENSCGOG00000010954	trrap (ENSCGOG00000007596)	FAM20C (ENSCGOG00000007375)	foxl3 (ENSCGOG00000007363)	ENSCGOG00000007360	tom1l2 (ENSCGOG00000007350)	atpaf2 (ENSCGOG00000007339)	GID4 (ENSCGOG00000007338)	noxo1b (ENSCGOG00000007331)
Pike perch	MODERN SPECIES	143	ENSSLUG00000003205 #35	ENSSLUG00000003187 #35	ENSSLUG00000003165	ENSSLUG00000003143	SH3BP1 (ENSSLUG00000003026)	pdap1a (ENSSLUG00000002997)	cby1 (ENSSLUG00000002974)	PLBD1 (ENSSLUG00000025951)	ENSSLUG00000025950	ENSSLUG00000025948	csdc2a (ENSSLUG00000025945) #15	aco2 (ENSSLUG00000025939) #17	phf5a (ENSSLUG00000025933) #18	tefa (ENSSLUG00000025932) #20	ZC3H7B (ENSSLUG00000025929) #21	rangap1b (ENSSLUG00000025925) #22	chadlb (ENSSLUG00000025922)	l3mbtl2 (ENSSLUG00000025920) #24	CBX7 (ENSSLUG00000025915)	josd1 (ENSSLUG00000025914)	ENSSLUG00000025913	xrcc6 (ENSSLUG00000025907) #12	ENSSLUG00000025897	desi1b (ENSSLUG00000025896) #13	mrtfab (ENSSLUG00000025895) ##32	get4 (ENSSLUG00000025894)	vps35l (ENSSLUG00000025843)	zdhhc16b (ENSSLUG00000025799)	mms19 (ENSSLUG00000025769)	ubtd1b (ENSSLUG00000025761)	ENSSLUG00000025755
Ovalentaria	ANCESTRAL SPECIES	13	ENSGT00940000153536.a.a.a.a	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000153137.b	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b #24	ENSGT01070000254302	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00650000094704	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT00390000015750	ENSGT00390000011343	ENSGT00940000155032.l	ENSGT00390000015583
Ovalentaria_B	ANCESTRAL SPECIES	7	ENSGT00940000153536.a.a.a.a	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000153137.b	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00990000204107	ENSGT00940000153840.a.b #24	ENSGT01070000254302	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32
Pomacentridae	ANCESTRAL SPECIES	182											ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00990000204107	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13
Pomacentridae_A	ANCESTRAL SPECIES	214											ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13
Amphiprion	ANCESTRAL SPECIES	254											ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13
Orange clownfish	MODERN SPECIES	25											csdc2a (ENSAPEG00000020151) #15	aco2 (ENSAPEG00000020171) #17	phf5a (ENSAPEG00000020260) #18	tefa (ENSAPEG00000020278) #20	ZC3H7B (ENSAPEG00000020311) #21	rangap1b (ENSAPEG00000020382) #22	chadlb (ENSAPEG00000020436)	l3mbtl2 (ENSAPEG00000020506) #24	EP300 (ENSAPEG00000020628) #25	ENSAPEG00000020659	josd1 (ENSAPEG00000020682)	xrcc6 (ENSAPEG00000020712) #12	desi1b (ENSAPEG00000020729) #13	ENSAPEG00000020779
Clown anemonefish	MODERN SPECIES	1418	plxdc2b (ENSAOCG00000020364)	ENSAOCG00000020372	chmp4c (ENSAOCG00000020395)	zfand1 (ENSAOCG00000020403)	maf1b (ENSAOCG00000020422)	arl8 (ENSAOCG00000020462)	ENSAOCG00000020504	ENSAOCG00000020520	ENSAOCG00000020662	ENSAOCG00000020758	csdc2a (ENSAOCG00000020795) #15	aco2 (ENSAOCG00000020887) #17	phf5a (ENSAOCG00000020917) #18	tefa (ENSAOCG00000020967) #20	ZC3H7B (ENSAOCG00000021081) #21	rangap1b (ENSAOCG00000021138) #22	chadlb (ENSAOCG00000021226)	l3mbtl2 (ENSAOCG00000021254) #24	EP300 (ENSAOCG00000021276) #25	ENSAOCG00000021307	josd1 (ENSAOCG00000021330)	xrcc6 (ENSAOCG00000021344) #12	desi1b (ENSAOCG00000002807) #13	ENSAOCG00000002784
Spiny chromis	MODERN SPECIES	348														brinp3a.1 (ENSAPOG00000012311)	ENSAPOG00000012333	rangap1b (ENSAPOG00000012345) #22	chadlb (ENSAPOG00000012489)	l3mbtl2 (ENSAPOG00000012528) #24	EP300 (ENSAPOG00000012548) #25	ENSAPOG00000012563	josd1 (ENSAPOG00000012599)	xrcc6 (ENSAPOG00000012704) #12	ENSAPOG00000012724
Bicolor damselfish	MODERN SPECIES	1812											csdc2a (ENSSPAG00000022972) #15	aco2 (ENSSPAG00000022958) #17	phf5a (ENSSPAG00000022955) #18	tefa (ENSSPAG00000022946) #20	ZC3H7B (ENSSPAG00000022933) #21	rangap1b (ENSSPAG00000022924) #22	chadlb (ENSSPAG00000022921)	ENSSPAG00000022913	l3mbtl2 (ENSSPAG00000022900) #24	EP300 (ENSSPAG00000022894) #25
Cichlidae	ANCESTRAL SPECIES	28	ENSGT00940000153536.a.a.a.a	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000153137.b	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00990000204107	ENSGT00940000153840.a.b #24	ENSGT01070000254302	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT00940000163663.A.b	ENSGT00730000111100.a.b #13	ENSGT00940000153239.B #12	ENSGT00650000094704	ENSGT00390000015750	ENSGT00390000011343	ENSGT00940000155032.l
Pseudocrenilabrinae	ANCESTRAL SPECIES	9	ENSGT00940000153536.a.a.a.a	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000153137.b	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00990000204107	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT00940000163663.A.b	ENSGT00730000111100.a.b #13	ENSGT00940000153239.B #12	ENSGT00650000094704	ENSGT00390000015750	ENSGT00390000011343	ENSGT00940000155032.l	ENSGT00390000015583
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	7	ENSGT00940000153536.a.a.a.a	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000153137.b	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00990000204107	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT00940000163663.A.b	ENSGT00730000111100.a.b #13	ENSGT00940000153239.B #12	ENSGT00650000094704	ENSGT00390000015750	ENSGT00390000011343	ENSGT00940000155032.l	ENSGT00390000015583
Haplochromini	ANCESTRAL SPECIES	22	ENSGT00940000153536.a.a.a.a	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000153137.b	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00990000204107	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT00940000163663.A.b	ENSGT00730000111100.a.b #13	ENSGT00940000153239.B #12	ENSGT00650000094704	ENSGT00390000015750	ENSGT00390000011343	ENSGT00940000155032.l	ENSGT00390000015583
Haplochromini_A	ANCESTRAL SPECIES	24	ENSGT00940000153536.a.a.a.a	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000153137.b	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00990000204107	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT00940000163663.A.b	ENSGT00730000111100.a.b #13	ENSGT00940000153239.B #12	ENSGT00650000094704	ENSGT00390000015750	ENSGT00390000011343	ENSGT00940000155032.l	ENSGT00390000015583
Haplochromini_B	ANCESTRAL SPECIES	24	ENSGT00940000153536.a.a.a.a	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000153137.b	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00990000204107	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT00940000163663.A.b	ENSGT00730000111100.a.b #13	ENSGT00940000153239.B #12	ENSGT00650000094704	ENSGT00390000015750	ENSGT00390000011343	ENSGT00940000155032.l	ENSGT00390000015583
Zebra mbuna	MODERN SPECIES	70	ENSMZEG00005019295 #35	ENSMZEG00005019285 #35	ENSMZEG00005019278	ENSMZEG00005019274	ENSMZEG00005019269	pdap1a (ENSMZEG00005019266)	cby1 (ENSMZEG00005019260)	PLBD1 (ENSMZEG00005019252)	ENSMZEG00005019247	ENSMZEG00005019231	csdc2a (ENSMZEG00005019207) #15	aco2 (ENSMZEG00005019194) #17	phf5a (ENSMZEG00005019188) #18	tefa (ENSMZEG00005019182) #20	ZC3H7B (ENSMZEG00005019172) #21	RANGAP1 (ENSMZEG00005019157) #22	chadlb (ENSMZEG00005019149)
Eastern happy	MODERN SPECIES	20	ENSACLG00000019768 #35	ENSACLG00000019707 #35	ENSACLG00000019687	ENSACLG00000019678	ENSACLG00000019625	pdap1a (ENSACLG00000019580)	cby1 (ENSACLG00000019550)	PLBD1 (ENSACLG00000019493)	ENSACLG00000019454	ENSACLG00000019316	csdc2a (ENSACLG00000019286) #15	aco2 (ENSACLG00000019179) #17	phf5a (ENSACLG00000019161) #18	tefa (ENSACLG00000019138) #20	ZC3H7B (ENSACLG00000019120) #21	rangap1b (ENSACLG00000019057) #22	chadlb (ENSACLG00000019020)	ENSACLG00000019013	l3mbtl2 (ENSACLG00000018958) #24	EP300 (ENSACLG00000018899) #25	ENSACLG00000018872	josd1 (ENSACLG00000018856)	mrtfab (ENSACLG00000018713) ##32	ENSACLG00000018698	desi1b (ENSACLG00000018683) #13	xrcc6 (ENSACLG00000018608) #12	ENSACLG00000018598	get4 (ENSACLG00000018508)	vps35l (ENSACLG00000018376)	zdhhc16b (ENSACLG00000018343)	mms19 (ENSACLG00000018291)
P. nyererei	MODERN SPECIES	300	csnk1e (ENSPNYG00000004790)	ENSPNYG00000004634 #35	ENSPNYG00000004613	ENSPNYG00000004596	ENSPNYG00000004581	pdap1a (ENSPNYG00000004577)	cby1 (ENSPNYG00000004563)	PLBD1 (ENSPNYG00000004547)	ENSPNYG00000004528	ENSPNYG00000004477	csdc2a (ENSPNYG00000004457) #15	aco2 (ENSPNYG00000004399) #17	phf5a (ENSPNYG00000004375) #18	tefa (ENSPNYG00000004348) #20	ZC3H7B (ENSPNYG00000004322) #21	rangap1b (ENSPNYG00000004258) #22	chadlb (ENSPNYG00000004177)	ENSPNYG00000004155	l3mbtl2 (ENSPNYG00000004122) #24	EP300 (ENSPNYG00000004005) #25	CBX7 (ENSPNYG00000003947)	josd1 (ENSPNYG00000003924)	mrtfab (ENSPNYG00000003895) ##32	ENSPNYG00000003881	desi1b (ENSPNYG00000003863) #13	xrcc6 (ENSPNYG00000003815) #12	get4 (ENSPNYG00000003783)	vps35l (ENSPNYG00000003668)	zdhhc16b (ENSPNYG00000003524)	mms19 (ENSPNYG00000003347)	ubtd1b (ENSPNYG00000003316)
Lyretail cichlid	MODERN SPECIES	475	csnk1e (ENSNBRG00000005199)	ENSNBRG00000005150 #35	ENSNBRG00000005090	ENSNBRG00000005076	ENSNBRG00000005057	pdap1a (ENSNBRG00000005023)	cby1 (ENSNBRG00000005004)	PLBD1 (ENSNBRG00000004963)	ENSNBRG00000004953	ENSNBRG00000004863	csdc2a (ENSNBRG00000004848) #15	aco2 (ENSNBRG00000004766) #17	phf5a (ENSNBRG00000004747) #18	tefa (ENSNBRG00000004722) #20	ZC3H7B (ENSNBRG00000004708) #21	rangap1b (ENSNBRG00000004652) #22	chadlb (ENSNBRG00000004619)	ENSNBRG00000004606	l3mbtl2 (ENSNBRG00000004591) #24	EP300 (ENSNBRG00000004472) #25	ENSNBRG00000004419	josd1 (ENSNBRG00000004396)	mrtfab (ENSNBRG00000004360) ##32	ENSNBRG00000004339	desi1b (ENSNBRG00000004326) #13	xrcc6 (ENSNBRG00000004125) #12	get4 (ENSNBRG00000004065)	vps35l (ENSNBRG00000003968)	zdhhc16b (ENSNBRG00000003955)	mms19 (ENSNBRG00000003847)	ubtd1b (ENSNBRG00000003815)
Nile tilapia	MODERN SPECIES	20	ENSONIG00000036122	ENSONIG00000019681	ENSONIG00000029402	pdap1a (ENSONIG00000036234)	cby1 (ENSONIG00000019684)	PLBD1 (ENSONIG00000019685)	ENSONIG00000019686	ENSONIG00000019687	ENSONIG00000030486	csdc2a (ENSONIG00000028637) #15	aco2 (ENSONIG00000019690) #17	phf5a (ENSONIG00000040142) #18	tefa (ENSONIG00000019694) #20	ENSONIG00000036143	ZC3H7B (ENSONIG00000019695) #21	rangap1b (ENSONIG00000019697) #22	chadlb (ENSONIG00000031087)	chadlb (ENSONIG00000019699)	ENSONIG00000030167	l3mbtl2 (ENSONIG00000019700) #24	EP300 (ENSONIG00000019702) #25	cbx7 (ENSONIG00000040830)	josd1 (ENSONIG00000019707)	mrtfab (ENSONIG00000019711) ##32	ENSONIG00000038912	desi1b (ENSONIG00000019714) #13	xrcc6 (ENSONIG00000019715) #12	ENSONIG00000030173	get4 (ENSONIG00000019718)	vps35l (ENSONIG00000019720)	zdhhc16b (ENSONIG00000029550)
Midas cichlid	MODERN SPECIES	194	csnk1e (ENSACIG00000022041)	ENSACIG00000021990 #35	ENSACIG00000021975	ENSACIG00000021970	SH3BP1 (ENSACIG00000021950)	pdap1a (ENSACIG00000021921)	cby1 (ENSACIG00000021908)	PLBD1 (ENSACIG00000021850)	ENSACIG00000021715	ENSACIG00000021664	csdc2a (ENSACIG00000021654) #15	aco2 (ENSACIG00000021636) #17	phf5a (ENSACIG00000021628) #18	tefa (ENSACIG00000021613) #20	ZC3H7B (ENSACIG00000021548) #21	rangap1b (ENSACIG00000021521) #22	chadlb (ENSACIG00000021497)	ENSACIG00000021488 #24	ENSACIG00000021474	ENSACIG00000021411 #25	ENSACIG00000021398	josd1 (ENSACIG00000021386)	mrtfab (ENSACIG00000021331) ##32	ENSACIG00000021313	desi1b (ENSACIG00000021296) #13	xrcc6 (ENSACIG00000021277) #12	get4 (ENSACIG00000021253)	vps35l (ENSACIG00000021198)	zdhhc16b (ENSACIG00000021174)	mms19 (ENSACIG00000021123)	ubtd1b (ENSACIG00000021104)
Atherinomorphae	ANCESTRAL SPECIES	10	ENSGT00940000153536.a.a.a.a	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000153137.b	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b #24	ENSGT00990000204107	ENSGT01070000254302	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00650000094704	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT00390000015750	ENSGT00390000011343	ENSGT00940000155032.l
Oryzias	ANCESTRAL SPECIES	11	ENSGT00940000153861.b.a	ENSGT00940000153536.a.a.a.a	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369.h	ENSGT00940000153137.b	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00650000094704	ENSGT00940000153239.B #12	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT01000000214725.A	ENSGT00390000008566.b.f	ENSGT00940000156026.f	ENSGT00950000183015.B.a.a	ENSGT00940000153692.B.a	ENSGT00940000161964.g.b
Oryzias_b	ANCESTRAL SPECIES	9	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369.h	ENSGT00940000153137.b	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000008061.ab.a.a.a.b	ENSGT00390000008061.ab.a.a.a.a	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00650000094704	ENSGT00940000153239.B #12	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT01000000214725.A	ENSGT00390000008566.b.f	ENSGT00940000156026.f	ENSGT00950000183015.B.a.a	ENSGT00940000153692.B.a	ENSGT00940000161964.g.b
Indian medaka	MODERN SPECIES	17	ENSOMEG00000008407	ENSOMEG00000008415	ENSOMEG00000008443	ENSOMEG00000008455	ENSOMEG00000008464	ENSOMEG00000000207	ENSOMEG00000008473	ENSOMEG00000008483	ENSOMEG00000000840	ENSOMEG00000008492	csdc2a (ENSOMEG00000008503) #15	aco2 (ENSOMEG00000000704) #17	phf5a (ENSOMEG00000008564) #18	tefa (ENSOMEG00000008586) #20	ZC3H7B (ENSOMEG00000008642) #21	rangap1b (ENSOMEG00000008703) #22	chadlb (ENSOMEG00000008740)	l3mbtl2 (ENSOMEG00000008798) #24	ENSOMEG00000008818	EP300 (ENSOMEG00000008863) #25	ENSOMEG00000008892	josd1 (ENSOMEG00000008932)	ENSOMEG00000008945	xrcc6 (ENSOMEG00000008998) #12	ENSOMEG00000009039	ENSOMEG00000009072	rbp3 (ENSOMEG00000009087)	gdf2 (ENSOMEG00000009094)	gdf10b (ENSOMEG00000009101)	FRMPD2 (ENSOMEG00000009174)	mapk8b (ENSOMEG00000009255)
Javanese ricefish	MODERN SPECIES	10	ENSOJAG00000006693	ENSOJAG00000006442	cby1 (ENSOJAG00000006380)	PLBD1 (ENSOJAG00000005665)	ENSOJAG00000005616	ENSOJAG00000005520	ENSOJAG00000005507	ENSOJAG00000005500	ENSOJAG00000005487	ENSOJAG00000005484	csdc2a (ENSOJAG00000005463) #15	aco2 (ENSOJAG00000005119) #17	phf5a (ENSOJAG00000005081) #18	tefa (ENSOJAG00000005056) #20	ZC3H7B (ENSOJAG00000005022) #21	rangap1b (ENSOJAG00000004890) #22	chadlb (ENSOJAG00000004868)	l3mbtl2 (ENSOJAG00000004841) #24	CBX7 (ENSOJAG00000004405)	josd1 (ENSOJAG00000004391)	ENSOJAG00000004376	xrcc6 (ENSOJAG00000004317) #12	ENSOJAG00000004271 ##32	ENSOJAG00000004257 ##32	ENSOJAG00000004244	VSTM4 (ENSOJAG00000004182)	ARHGAP22 (ENSOJAG00000003508)	mapk8b (ENSOJAG00000003171)	FRMPD2 (ENSOJAG00000003085)	gdf10b (ENSOJAG00000003077)	gdf2 (ENSOJAG00000003053)
Oryzias_a	ANCESTRAL SPECIES	32	ENSGT00940000153861.b.a	ENSGT00940000153536.a.a.a.a	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369.h	ENSGT00940000153137.b	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00940000153239.B #12	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT01000000214725.A	ENSGT00390000008566.b.f	ENSGT00940000156026.f	ENSGT00950000183015.B.a.a	ENSGT00940000153692.B.a	ENSGT00940000161964.g.b	ENSGT00940000157214.f.a
Chinese medaka	DUPLICATION
Chinese medaka	MODERN SPECIES	5216																ENSOSIG00000003564 #22
Chinese medaka	MODERN SPECIES	2556																ENSOSIG00000001785 #22
Japanese Medaka HdrR	MODERN SPECIES	10	cby1 (ENSORLG00000025018)	ENSORLG00000002745	ENSORLG00000025913	gucy2cb (ENSORLG00000002713)	ENSORLG00000025322	ENSORLG00000028126	ENSORLG00000029436	ENSORLG00000028670	ENSORLG00000002652	ENSORLG00000028944	csdc2a (ENSORLG00000024428) #15	aco2 (ENSORLG00000002618) #17	phf5a (ENSORLG00000002591) #18	tefa (ENSORLG00000002582) #20	ZC3H7B (ENSORLG00000002568) #21	rangap1b (ENSORLG00000002547) #22	chadlb (ENSORLG00000002517)	l3mbtl2 (ENSORLG00000002510) #24	ENSORLG00000002496 #25	ENSORLG00000026332	josd1 (ENSORLG00000029725)	xrcc6 (ENSORLG00000002436) #12	ENSORLG00000025662	mrtfab (ENSORLG00000002421) ##32	VSTM4 (ENSORLG00000002399)	LRRC18 (ENSORLG00000002394)	ARHGAP22 (ENSORLG00000002387)	mapk8b (ENSORLG00000002370)	FRMPD2 (ENSORLG00000002323)	ENSORLG00000028063	gdf10b (ENSORLG00000020281)
Cyprinodontiformes	ANCESTRAL SPECIES	13	ENSGT00940000153536.a.a.a.a	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000153137.b	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b #24	ENSGT01070000254302	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00650000094704	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT00390000015750	ENSGT00390000011343	ENSGT00940000155032.l	ENSGT00390000015583
Cyprinodontoidei	ANCESTRAL SPECIES	28	ENSGT00940000160643.j	ENSGT00940000159914	ENSGT00940000154352.A	ENSGT00940000165576.a.a	ENSGT01090000260005.a.b.a.a	ENSGT00940000157539	ENSGT00940000164208	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b #24	ENSGT00990000204107	ENSGT01070000254302	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00650000094704	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT00390000015750	ENSGT00390000011343	ENSGT00940000155032.l
NAME_4	ANCESTRAL SPECIES	27	ENSGT00940000160643.j	ENSGT00940000159914	ENSGT00940000154352.A	ENSGT00940000165576.a.a	ENSGT01090000260005.a.b.a.a	ENSGT00940000157539	ENSGT00940000164208	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b #24	ENSGT01070000254302	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00650000094704	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00950000182979.a.a.a.b ##32	ENSGT00390000015750	ENSGT00390000011343	ENSGT00940000155032.l	ENSGT00390000015583	ENSGT00940000158630.g.a
Mummichog	MODERN SPECIES	702							ENSFHEG00000012467	ENSFHEG00000012479	med24 (ENSFHEG00000012582)	ENSFHEG00000012629	csdc2a (ENSFHEG00000012650) #15	aco2 (ENSFHEG00000012709) #17	phf5a (ENSFHEG00000012724) #18	tefa (ENSFHEG00000012738) #20	ZC3H7B (ENSFHEG00000000281) #21	rangap1b (ENSFHEG00000012821) #22
Sheepshead minnow	MODERN SPECIES	509																rangap1b (ENSCVAG00000002275) #22	chadlb (ENSCVAG00000002262)	ENSCVAG00000002259 #24	ENSCVAG00000002255	EP300 (ENSCVAG00000002250) #25	CBX7 (ENSCVAG00000002206)	josd1 (ENSCVAG00000002195)	xrcc6 (ENSCVAG00000002189) #12	desi1b (ENSCVAG00000002180) #13	mrtfab (ENSCVAG00000002168) ##32	get4 (ENSCVAG00000002141)	vps35l (ENSCVAG00000002135)	zdhhc16b (ENSCVAG00000002126)	mms19 (ENSCVAG00000002113)	ubtd1b (ENSCVAG00000002093)	ENSCVAG00000002086
Poeciliinae	ANCESTRAL SPECIES	10	ENSGT00940000160643.j	ENSGT00940000159914	ENSGT00940000154352.A	ENSGT00940000165576.a.a	ENSGT01090000260005.a.b.a.a	ENSGT00940000157539	ENSGT00940000164208	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00650000094704	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT00390000015750	ENSGT00390000011343	ENSGT00940000155032.l	ENSGT00390000015583	ENSGT00940000158630.g.a
Poecilia	ANCESTRAL SPECIES	15	ENSGT00940000160643.j	ENSGT00940000159914	ENSGT00940000154352.A	ENSGT00940000165576.b	ENSGT01090000260005.a.b.a.a	ENSGT00940000157539	ENSGT00940000164208	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00650000094704	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT00390000015750	ENSGT00390000011343	ENSGT00940000155032.l	ENSGT00390000015583	ENSGT00940000158630.g.a
NAME_6	ANCESTRAL SPECIES		ENSGT00940000160643.j	ENSGT00940000159914	ENSGT00940000154352.A	ENSGT00940000165576.b	ENSGT01090000260005.a.b.a.a	ENSGT00940000157539	ENSGT00940000164208	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00650000094704	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT00390000015750	ENSGT00390000011343	ENSGT00940000155032.l	ENSGT00390000015583	ENSGT00940000158630.g.a
Amazon molly	MODERN SPECIES	256	pyyb (ENSPFOG00000016152)	tut1 (ENSPFOG00000016195)	mki67 (ENSPFOG00000016223)	rarab (ENSPFOG00000016312)	ENSPFOG00000016322	top2a (ENSPFOG00000016534)	ENSPFOG00000020238	ENSPFOG00000016574	med24 (ENSPFOG00000016585)	ENSPFOG00000020239	csdc2a (ENSPFOG00000016755) #15	aco2 (ENSPFOG00000016765) #17	phf5a (ENSPFOG00000016814) #18	tefa (ENSPFOG00000016821) #20	ZC3H7B (ENSPFOG00000016834) #21	rangap1b (ENSPFOG00000016919) #22	chadlb (ENSPFOG00000016956)	l3mbtl2 (ENSPFOG00000017006) #24	ENSPFOG00000017073 #25	ENSPFOG00000017155	josd1 (ENSPFOG00000017162)	ENSPFOG00000023433	xrcc6 (ENSPFOG00000017173) #12	desi1b (ENSPFOG00000017196) #13	ENSPFOG00000017214	ENSPFOG00000023236	mrtfab (ENSPFOG00000017227) ##32	get4 (ENSPFOG00000017263)	vps35l (ENSPFOG00000017291)	zdhhc16b (ENSPFOG00000017419)	zdhhc16b (ENSPFOG00000024323)
Sailfin molly	MODERN SPECIES	1970											csdc2a (ENSPLAG00000001305) #15	aco2 (ENSPLAG00000001300) #17	phf5a (ENSPLAG00000001292) #18	tefa (ENSPLAG00000001290) #20	ZC3H7B (ENSPLAG00000001288) #21	rangap1b (ENSPLAG00000001283) #22	chadlb (ENSPLAG00000001281)	l3mbtl2 (ENSPLAG00000001276) #24
Guppy	MODERN SPECIES	449	tut1 (ENSPREG00000020464)	mki67 (ENSPREG00000020481)	rarab (ENSPREG00000020502)	ENSPREG00000020520	top2a (ENSPREG00000020534)	ENSPREG00000020563	ENSPREG00000020569	med24 (ENSPREG00000020582)	ENSPREG00000020640	ENSPREG00000020645	csdc2a (ENSPREG00000020652) #15	aco2 (ENSPREG00000020672) #17	phf5a (ENSPREG00000020700) #18	tefa (ENSPREG00000020710) #20	ZC3H7B (ENSPREG00000020727) #21	rangap1b (ENSPREG00000020745) #22	chadlb (ENSPREG00000020780)	l3mbtl2 (ENSPREG00000020853) #24	ENSPREG00000020869	ENSPREG00000020876	EP300 (ENSPREG00000020888) #25	ENSPREG00000020913	josd1 (ENSPREG00000020940)	xrcc6 (ENSPREG00000020957) #12	desi1b (ENSPREG00000020982) #13	ENSPREG00000020998	mrtfab (ENSPREG00000021039) ##32	get4 (ENSPREG00000021122)	vps35l (ENSPREG00000021171)	zdhhc16b (ENSPREG00000021251)	mms19 (ENSPREG00000021276)
Platyfish	MODERN SPECIES	1	mki67 (ENSXMAG00000014627)	ENSXMAG00000028093	ENSXMAG00000011301	top2a (ENSXMAG00000011303)	ENSXMAG00000019659	ENSXMAG00000021866	ENSXMAG00000028761	med24 (ENSXMAG00000011374)	ENSXMAG00000019660	ENSXMAG00000027223	csdc2a (ENSXMAG00000000696) #15	aco2 (ENSXMAG00000000683) #17	phf5a (ENSXMAG00000000679) #18	tefa (ENSXMAG00000000678) #20	ZC3H7B (ENSXMAG00000026502) #21	rangap1b (ENSXMAG00000000663) #22	chadlb (ENSXMAG00000000655)	l3mbtl2 (ENSXMAG00000009758) #24	EP300 (ENSXMAG00000009730) #25	ENSXMAG00000009724	josd1 (ENSXMAG00000021882)	xrcc6 (ENSXMAG00000009691) #12	desi1b (ENSXMAG00000009685) #13	ENSXMAG00000009684	mrtfab (ENSXMAG00000009671) ##32	get4 (ENSXMAG00000009654)	vps35l (ENSXMAG00000009612)	zdhhc16b (ENSXMAG00000025584)	mms19 (ENSXMAG00000009570)	ubtd1b (ENSXMAG00000022287)	ENSXMAG00000029632
Aplocheiloidei	ANCESTRAL SPECIES	181				ENSGT00940000163663.A.b	ENSGT00730000111100.a.b #13	ENSGT00940000153239.B #12	ENSGT00650000094704	ENSGT00390000009228.b	ENSGT00940000158365.f.a	ENSGT00940000155497.a.b #25	ENSGT01070000254302	ENSGT00940000153840.a.b #24	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a
Turquoise killifish	MODERN SPECIES	1621	CSDC2A (ENSNFUG00015019188) #15	ENSNFUG00015019187	ACO2 (ENSNFUG00015019055) #17	mrtfab (ENSNFUG00015019027) ##32	ENSNFUG00015019018	desi1b (ENSNFUG00015019008) #13	xrcc6 (ENSNFUG00015018912) #12	ENSNFUG00015018905	josd1 (ENSNFUG00015018897)	CBX7 (ENSNFUG00015018890)	EP300 (ENSNFUG00015018836) #25	L3MBTL2 (ENSNFUG00015018832) #24	phf5a (ENSNFUG00015018826) #18	TEFA (ENSNFUG00015018821) #20	ZC3H7B (ENSNFUG00015018799) #21	RANGAP1 (ENSNFUG00015018710) #22	chadlb (ENSNFUG00015018697)	GET4 (ENSNFUG00015018662)	C12H16ORF62 (ENSNFUG00015018337)	zdhhc16b (ENSNFUG00015018329)	MMS19 (ENSNFUG00015017663)	UBTD1B (ENSNFUG00015017624)	ENSNFUG00015017614	rbp3 (ENSNFUG00015017608)	ENSNFUG00015017601	gdf2 (ENSNFUG00015017597)	GDF10B (ENSNFUG00015017594)	ENSNFUG00015017589	mapk8b (ENSNFUG00015017218)	ENSNFUG00015017200	ARHGAP22 (ENSNFUG00015017194)
Pinecone sodierfish	MODERN SPECIES	10	ENSMMDG00005007505 #35	ENSMMDG00005007510	ENSMMDG00005007513	SH3BP1 (ENSMMDG00005007516)	pdap1a (ENSMMDG00005007521)	cby1 (ENSMMDG00005007526)	PLBD1 (ENSMMDG00005007527)	ENSMMDG00005007532	ENSMMDG00005007543	csdc2a (ENSMMDG00005007576) #15	ENSMMDG00005007581	aco2 (ENSMMDG00005007589) #17	phf5a (ENSMMDG00005007725) #18	tefa (ENSMMDG00005007728) #20	ZC3H7B (ENSMMDG00005007730) #21	rangap1b (ENSMMDG00005007732) #22	chadlb (ENSMMDG00005007750)	l3mbtl2 (ENSMMDG00005007754) #24	EP300 (ENSMMDG00005007777) #25	CBX7 (ENSMMDG00005009442)	josd1 (ENSMMDG00005009447)	xrcc6 (ENSMMDG00005009465) #12	desi1b (ENSMMDG00005009775) #13	ENSMMDG00005009776	mrtfab (ENSMMDG00005009780) ##32	ENSMMDG00005009784	ENSMMDG00005009785	RNPS1 (ENSMMDG00005009788)	ENSMMDG00005009789	COX19 (ENSMMDG00005009791)	ENSMMDG00005009799
Cod	MODERN SPECIES	9	tmem184ba (ENSGMOG00000013102)	ENSGMOG00000036805 #35	ENSGMOG00000013125 #35	ENSGMOG00000013166	ENSGMOG00000030881	ENSGMOG00000013196	pdap1a (ENSGMOG00000013218)	cby1 (ENSGMOG00000013225)	ENSGMOG00000013233	ENSGMOG00000013246	ENSGMOG00000013257	csdc2a (ENSGMOG00000023085) #15	aco2 (ENSGMOG00000001946) #17	tefa (ENSGMOG00000028335) #20	ZC3H7B (ENSGMOG00000013351) #21	rangap1b (ENSGMOG00000013380) #22	chadlb (ENSGMOG00000013414)	l3mbtl2 (ENSGMOG00000013428) #24	ENSGMOG00000013440 #25	ENSGMOG00000013491	josd1 (ENSGMOG00000024543)	ENSGMOG00000024672	xrcc6 (ENSGMOG00000013524) #12	ENSGMOG00000013551	ENSGMOG00000013318 #18	ENSGMOG00000033808	ENSGMOG00000023741	ENSGMOG00000007474	noc3l (ENSGMOG00000007458)	dkk1b (ENSGMOG00000037157)	ENSGMOG00000029012
Otomorpha	ANCESTRAL SPECIES	1	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000161934	ENSGT00940000153137.b	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.n #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00650000094704	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT00940000156505.s	ENSGT00940000157054	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093
Otophysi	ANCESTRAL SPECIES		ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000161934	ENSGT00940000153137.b	ENSGT00390000018542.a.a #21	ENSGT00940000156578.a.b #20	ENSGT00390000018518 #18	ENSGT00940000154892.n #17	ENSGT00390000000022.b.a.b #15	ENSGT00940000155955.C.i.b	ENSGT00940000167326	ENSGT00530000063509.A.h	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT00940000156505.s	ENSGT00940000157054	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093	ENSGT00940000160113
Characiphysae	ANCESTRAL SPECIES	1	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000161934	ENSGT00940000153137.b	ENSGT00390000018542.a.a #21	ENSGT00940000156578.a.b #20	ENSGT00390000018518 #18	ENSGT00940000154892.n #17	ENSGT00390000000022.b.a.b #15	ENSGT00940000155955.C.i.b	ENSGT00940000167326	ENSGT00530000063509.A.h	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT00940000156505.s	ENSGT00940000157054	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093	ENSGT00940000160113
Characiphysae_b	ANCESTRAL SPECIES	3	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000161934	ENSGT00940000153137.b	ENSGT00390000018542.a.a #21	ENSGT00940000156578.a.b #20	ENSGT00390000018518 #18	ENSGT00940000154892.n #17	ENSGT00390000000022.b.a.b #15	ENSGT00940000155955.C.i.b	ENSGT00940000167326	ENSGT00530000063509.A.h	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT00940000156505.s	ENSGT00940000157054	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093	ENSGT00940000160113
Characoidei	ANCESTRAL SPECIES	6																ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT00940000156505.s	ENSGT00940000157054	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093	ENSGT00940000160113
Red-bellied piranha	MODERN SPECIES	1177																rangap1b (ENSPNAG00000019718) #22	chadlb (ENSPNAG00000019709)	l3mbtl2 (ENSPNAG00000019694) #24	EP300 (ENSPNAG00000019634) #25	ENSPNAG00000019469	josd1 (ENSPNAG00000019371)
Mexicana tetra	MODERN SPECIES	19	ENSAMXG00000025724	ENSAMXG00000025725	RNF213 (ENSAMXG00000018097)	si:ch1073-357b18.4 (ENSAMXG00000037173)	mrpl58 (ENSAMXG00000034224)	wdr45b (ENSAMXG00000039426)	foxk2a (ENSAMXG00000034378)	ENSAMXG00000029479	SHISA6 (ENSAMXG00000015689)	DNAH17 (ENSAMXG00000015711)	MYOCD (ENSAMXG00000036216) ##32	map2k4b (ENSAMXG00000015804)	adprm (ENSAMXG00000031575)	adprm (ENSAMXG00000041518)	ENSAMXG00000015921	rangap1b (ENSAMXG00000007477) #22	chadlb (ENSAMXG00000007483)	l3mbtl2 (ENSAMXG00000018021) #24	EP300 (ENSAMXG00000007487) #25	ENSAMXG00000007494	josd1 (ENSAMXG00000034284)	xrcc6 (ENSAMXG00000007545) #12	desi1b (ENSAMXG00000030899) #13	ENSAMXG00000037949	mrtfab (ENSAMXG00000007612) ##32	rgs9b (ENSAMXG00000007688)	gna13a (ENSAMXG00000033589)	AMZ2 (ENSAMXG00000039045)	slc16a6a (ENSAMXG00000007885)	arsg (ENSAMXG00000007957)	snx11 (ENSAMXG00000034430)
Electric eel	MODERN SPECIES	94	tmem184ba (ENSEEEG00000010702)	csnk1e (ENSEEEG00000011021)	ENSEEEG00000011034 #35	ENSEEEG00000011036	ENSEEEG00000011041	ENSEEEG00000011049	pdap1a (ENSEEEG00000011110)	cby1 (ENSEEEG00000011111)	ZC3H7B (ENSEEEG00000011114) #21	tefa (ENSEEEG00000011115) #20	phf5a (ENSEEEG00000011117) #18	aco2 (ENSEEEG00000011123) #17	csdc2a (ENSEEEG00000011143) #15	GUCY2C (ENSEEEG00000011149)	ENSEEEG00000011272	rangap1b (ENSEEEG00000011276) #22	chadlb (ENSEEEG00000011292)	l3mbtl2 (ENSEEEG00000011299) #24	ENSEEEG00000011486	josd1 (ENSEEEG00000011487)	xrcc6 (ENSEEEG00000011488) #12	desi1b (ENSEEEG00000011501) #13	ENSEEEG00000011503	mrtfab (ENSEEEG00000011506) ##32	rgs9b (ENSEEEG00000011512)	rgs9b (ENSEEEG00000011513)	gna13a (ENSEEEG00000011519)	AMZ2 (ENSEEEG00000011533)	slc16a6a (ENSEEEG00000011538)	arsg (ENSEEEG00000011549)	snx11 (ENSEEEG00000011554)
Channel catfish	MODERN SPECIES	4	csnk1e (ENSIPUG00000001538)	tnrc6b (ENSIPUG00000001515) #35	ENSIPUG00000001483	ENSIPUG00000001458	SH3BP1 (ENSIPUG00000001411)	pdap1a (ENSIPUG00000001396)	slc16a8 (ENSIPUG00000001384)	cby1 (ENSIPUG00000001373)	ENSIPUG00000001283 #21	TEF (ENSIPUG00000001239) #20	phf5a (ENSIPUG00000001222) #18	aco2 (ENSIPUG00000001101) #17	CSDC2 (ENSIPUG00000001089) #15	GUCY2C (ENSIPUG00000001043)	kctd17 (ENSIPUG00000001013)	rangap1b (ENSIPUG00000000910) #22	chadl (ENSIPUG00000000903)	l3mbtl2 (ENSIPUG00000000886) #24	EP300 (ENSIPUG00000000806) #25	ENSIPUG00000000795	ENSIPUG00000000790	josd1 (ENSIPUG00000000780)	xrcc6 (ENSIPUG00000000767) #12	desi1b (ENSIPUG00000000760) #13	ENSIPUG00000000754	mrtfab (ENSIPUG00000000739) ##32	rgs9b (ENSIPUG00000000729)	GNA13 (ENSIPUG00000000718)	AMZ2 (ENSIPUG00000000701)	slc16a6 (ENSIPUG00000000700)	arsg (ENSIPUG00000000690)
Cyprinoidei	ANCESTRAL SPECIES	26	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000161934	ENSGT00940000153137.b	ENSGT00390000018542.a.a #21	ENSGT00940000156578.a.b #20	ENSGT00390000018518 #18	ENSGT00940000154892.n #17	ENSGT00390000000022.b.a.b #15	ENSGT00940000155955.C.i.b	ENSGT00940000167326	ENSGT00530000063509.A.h	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT00940000156505.s	ENSGT00940000155575.i.a	ENSGT00940000159093	ENSGT00940000160113	ENSGT00940000166841	ENSGT01030000234627.a.b.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	231										ENSGT00390000018542.a.a.b #21	ENSGT00940000156578.a.b.b #20	ENSGT00390000018518.nb.a #18	ENSGT00940000154892.n.d #17	ENSGT00390000000022.b.a.b.a #15	ENSGT00940000167326.d	ENSGT00440000039203.i.e #22	ENSGT00940000153840.a.b.i #24	ENSGT00940000155497.a.b.b #25	ENSGT00940000158365.f.a.a	ENSGT00390000009228.b.b	ENSGT00940000153239.B.g #12	ENSGT00730000111100.a.b.c #13	ENSGT00940000163663.A.b.a	ENSGT00950000182979.a.a.a.b.a ##32	ENSGT00940000156505.s.d	ENSGT00940000157054.u.a.a	ENSGT00530000063996.a.a.b	ENSGT00940000155575.i.a.e	ENSGT00940000159093.f	ENSGT00940000160113.h	ENSGT00940000166841.a
Goldfish	MODERN SPECIES	30	maff (ENSCARG00000025153)	tmem184ba (ENSCARG00000025210)	csnk1e (ENSCARG00000025460)	ENSCARG00000025482 #35	ENSCARG00000025592	ENSCARG00000025598	ENSCARG00000025617	pdap1a (ENSCARG00000026058)	slc16a8 (ENSCARG00000026092)	ENSCARG00000026110 #21	tefa (ENSCARG00000026188) #20	PHF5A (ENSCARG00000026208) #18	aco2 (ENSCARG00000026261) #17	csdc2a (ENSCARG00000027475) #15	ENSCARG00000027493	rangap1b (ENSCARG00000027571) #22	EP300 (ENSCARG00000027740) #25	ENSCARG00000028605	josd1 (ENSCARG00000028614)	ENSCARG00000028631	desi1b (ENSCARG00000028670) #13	ENSCARG00000028685	mrtfab (ENSCARG00000028698) ##32	rgs9b (ENSCARG00000028749)	gna13a (ENSCARG00000028940)	ENSCARG00000028972	SLC16A6 (ENSCARG00000028977)	snx11 (ENSCARG00000028994)	ENSCARG00000029003	stx4 (ENSCARG00000029013)	calcoco2 (ENSCARG00000029038)
Cyprininae_a	ANCESTRAL SPECIES	37	ENSGT00940000153536.a.a.a.a.b.a	ENSGT00940000155813.i.b.c #35	ENSGT00390000013698.b	ENSGT00940000160068.a.b.b.b	ENSGT00940000158369.c	ENSGT00390000018509.b.a	ENSGT00940000161934.b	ENSGT00940000153137.b.f	ENSGT00390000018542.a.a.b #21	ENSGT00940000156578.a.b.b #20	ENSGT00390000018518.nb.a #18	ENSGT00940000154892.n.d #17	ENSGT00390000000022.b.a.b.a #15	ENSGT00940000167326.d.a	ENSGT00940000167326.d.b	ENSGT00440000039203.i.e #22	ENSGT00940000165277.a.b	ENSGT00940000153840.a.b.i #24	ENSGT00940000155497.a.b.b #25	ENSGT00940000158365.f.a.a	ENSGT00390000009228.b.b	ENSGT00940000153239.B.g #12	ENSGT00730000111100.a.b.c #13	ENSGT00940000163663.A.b.a	ENSGT00950000182979.a.a.a.b.a ##32	ENSGT00940000156505.s.d	ENSGT00940000157054.u.a.a	ENSGT00530000063996.a.a.b	ENSGT00940000155575.i.a.e	ENSGT00940000159093.f	ENSGT00940000160113.h
Common carp reference	MODERN SPECIES	44	ENSCCRG00000017029 #35	ENSCCRG00000070556 #35	ENSCCRG00000017024	ENSCCRG00000017023	ENSCCRG00000046385	pdap1a (ENSCCRG00000041388)	slc16a8 (ENSCCRG00000047728)	cby1 (ENSCCRG00000047735)	ENSCCRG00000047746 #21	tefa (ENSCCRG00000047755) #20	phf5a (ENSCCRG00000028979) #18	aco2 (ENSCCRG00000026241) #17	csdc2a (ENSCCRG00000069621) #15	ENSCCRG00000053343	ENSCCRG00000075478	rangap1b (ENSCCRG00000062787) #22	chadlb (ENSCCRG00000069500)	l3mbtl2 (ENSCCRG00000003980) #24	ENSCCRG00000003483 #25	ENSCCRG00000066110	xrcc6 (ENSCCRG00000004076) #12	desi1b (ENSCCRG00000069148) #13	ENSCCRG00000005336	mrtfab (ENSCCRG00000053748) ##32	rgs9b (ENSCCRG00000005354)	gna13a (ENSCCRG00000080916)	ENSCCRG00000060983	ENSCCRG00000080966	ENSCCRG00000005511	snx11 (ENSCCRG00000061393)	ENSCCRG00000062006
Golden-line barbel	MODERN SPECIES	489	tomm22 (ENSSGRG00000036131)	maff (ENSSGRG00000036133)	tmem184ba (ENSSGRG00000036144)	ENSSGRG00000036900 #35	ENSSGRG00000036901	ENSSGRG00000036904	ENSSGRG00000036905	pdap1a (ENSSGRG00000036923)	cby1 (ENSSGRG00000036925)	ENSSGRG00000036955 #21	tefa (ENSSGRG00000036959) #20	phf5a (ENSSGRG00000036961) #18	aco2 (ENSSGRG00000036978) #17	csdc2a (ENSSGRG00000036991) #15	ENSSGRG00000036992	rangap1b (ENSSGRG00000037033) #22	l3mbtl2 (ENSSGRG00000037078) #24	EP300 (ENSSGRG00000037160) #25	ENSSGRG00000037161	josd1 (ENSSGRG00000037162)	xrcc6 (ENSSGRG00000037163) #12	desi1b (ENSSGRG00000037256) #13	ENSSGRG00000037257	mrtfab (ENSSGRG00000037258) ##32	rgs9b (ENSSGRG00000037260)	gna13a (ENSSGRG00000037261)	SLC16A6 (ENSSGRG00000037262)	ENSSGRG00000037263	snx11 (ENSSGRG00000037264)	ENSSGRG00000037265	stx4 (ENSSGRG00000037266)
Cyprininae	ANCESTRAL SPECIES	36	ENSGT00940000153536.a.a.a.a.b.a	ENSGT00940000155813.i.b.c #35	ENSGT00940000160068.a.b.b.b	ENSGT00940000158369.c	ENSGT00390000018509.b.a	ENSGT00940000161934.b	ENSGT00940000153137.b	ENSGT00390000018542.a.a.a #21	ENSGT00940000156578.a.b.a #20	ENSGT00390000018518.nb.b #18	ENSGT00940000154892.n.c #17	ENSGT00390000000022.b.a.b.b #15	ENSGT00940000155955.C.i.b	ENSGT00940000167326.c	ENSGT00530000063509.A.h	ENSGT00440000039203.i.f #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b.j #24	ENSGT00940000155497.a.b.a #25	ENSGT00940000158365.f.a.b	ENSGT00390000009228.b.a	ENSGT00940000153239.B.h #12	ENSGT00730000111100.a.b.d #13
Goldfish	MODERN SPECIES	3	csnk1e (ENSCARG00000007613)	ENSCARG00000007601	ENSCARG00000007592	ENSCARG00000007538	ENSCARG00000007477 #35	slc16a8 (ENSCARG00000007446)	cby1 (ENSCARG00000007430)	ENSCARG00000007330 #21	tefa (ENSCARG00000007309) #20	phf5a (ENSCARG00000007284) #18	aco2 (ENSCARG00000006902) #17	csdc2a (ENSCARG00000006872) #15	GUCY2C (ENSCARG00000004615)	ENSCARG00000004424	ENSCARG00000004343	rangap1b (ENSCARG00000004218) #22	chadlb (ENSCARG00000004193)	l3mbtl2 (ENSCARG00000003695) #24	EP300 (ENSCARG00000003476) #25	ENSCARG00000003445	josd1 (ENSCARG00000003441)	xrcc6 (ENSCARG00000003391) #12	desi1b (ENSCARG00000003378) #13	ENSCARG00000003376	ppp1r3cb (ENSCARG00000003367)	HECTD2 (ENSCARG00000003356)	pcgf5b (ENSCARG00000003346)	ankrd1b (ENSCARG00000003339)	rpp30 (ENSCARG00000003300)	ENSCARG00000003277	HTR7 (ENSCARG00000003268)
Cyprininae_a	ANCESTRAL SPECIES	8	ENSGT00940000155813.i.b.d #35	ENSGT00390000013698.a	ENSGT00940000160068.a.b.b.a.a	ENSGT00940000158369.d	ENSGT00390000018509.b.b	ENSGT00940000161934.a	ENSGT00940000153137.b.e	ENSGT00390000018542.a.a.a #21	ENSGT00940000156578.a.b.a #20	ENSGT00390000018518.nb.b #18	ENSGT00940000154892.n.c #17	ENSGT00390000000022.b.a.b.b #15	ENSGT00940000155955.C.i.b	ENSGT00940000167326.c	ENSGT00530000063509.A.h	ENSGT00440000039203.i.f #22	ENSGT00940000165277.a.a	ENSGT00940000153840.a.b.j #24	ENSGT00940000155497.a.b.a #25	ENSGT00940000158365.f.a.b	ENSGT00390000009228.b.a	ENSGT00940000153239.B.h #12	ENSGT00730000111100.a.b.d #13	ENSGT00940000163663.A.b.b	ENSGT00950000182979.a.a.a.b.b ##32	ENSGT00940000156505.s.c	ENSGT00940000157054.u.a.b	ENSGT00530000063996.a.a.a	ENSGT00530000063996.a.b	ENSGT00940000155575.i.a.f	ENSGT00940000159093.e
Common carp reference	MODERN SPECIES	25	ENSCCRG00000069174 #35	ENSCCRG00000029262	ENSCCRG00000069767	ENSCCRG00000029256	pdap1a (ENSCCRG00000029254)	slc16a8 (ENSCCRG00000029249)	cby1 (ENSCCRG00000029247)	ENSCCRG00000029231 #21	tefa (ENSCCRG00000029207) #20	phf5a (ENSCCRG00000054725) #18	aco2 (ENSCCRG00000029008) #17	csdc2a (ENSCCRG00000026211) #15	ENSCCRG00000035904	ENSCCRG00000059199	ENSCCRG00000035794	rangap1b (ENSCCRG00000035782) #22	chadlb (ENSCCRG00000035780)	l3mbtl2 (ENSCCRG00000035778) #24	ENSCCRG00000057202 #25	ENSCCRG00000068559	xrcc6 (ENSCCRG00000074154) #12	desi1b (ENSCCRG00000071135) #13	ENSCCRG00000059677	ENSCCRG00000005356	mrtfab (ENSCCRG00000054456) ##32	rgs9b (ENSCCRG00000035685)	gna13a (ENSCCRG00000055461)	ENSCCRG00000035666	arsg (ENSCCRG00000035639)	snx11 (ENSCCRG00000058183)	ENSCCRG00000028063
Golden-line barbel	MODERN SPECIES	56	ENSSGRG00000000282 #35	ENSSGRG00000000251	ENSSGRG00000000224	ENSSGRG00000000218	pdap1a (ENSSGRG00000000186)	slc16a8 (ENSSGRG00000000162)	cby1 (ENSSGRG00000000120)	ENSSGRG00000052734 #21	tefa (ENSSGRG00000052733) #20	phf5a (ENSSGRG00000052728) #18	phf5a (ENSSGRG00000052726) #18	aco2 (ENSSGRG00000052322) #17	csdc2a (ENSSGRG00000052301) #15	GUCY2C (ENSSGRG00000052280)	ENSSGRG00000052272	rangap1b (ENSSGRG00000052271) #22	ENSSGRG00000052270	chadlb (ENSSGRG00000052269)	l3mbtl2 (ENSSGRG00000052168) #24	EP300 (ENSSGRG00000052125) #25	ENSSGRG00000052118	josd1 (ENSSGRG00000052117)	xrcc6 (ENSSGRG00000052075) #12	desi1b (ENSSGRG00000052074) #13	ENSSGRG00000052073	mrtfab (ENSSGRG00000052071) ##32	rgs9b (ENSSGRG00000051837)	gna13a (ENSSGRG00000051830)	AMZ2 (ENSSGRG00000051829)	SLC16A6 (ENSSGRG00000051828)	ENSSGRG00000051827
Zebrafish	MODERN SPECIES	3	ENSDARG00000074161 #35	ENSDARG00000077900	ENSDARG00000079549	ENSDARG00000078119	pdap1a (ENSDARG00000092546)	slc16a8 (ENSDARG00000045153)	cby1 (ENSDARG00000077409)	ZC3H7B (ENSDARG00000055930) #21	tefa (ENSDARG00000039117) #20	phf5a (ENSDARG00000045155) #18	aco2 (ENSDARG00000007294) #17	csdc2a (ENSDARG00000041323) #15	ENSDARG00000056045	ENSDARG00000056050	PLBD1 (ENSDARG00000076015)	rangap1b (ENSDARG00000056059) #22	chadlb (ENSDARG00000075903)	l3mbtl2 (ENSDARG00000056079) #24	EP300 (ENSDARG00000100666) #25	CBX7 (ENSDARG00000087181)	josd1 (ENSDARG00000071548)	xrcc6 (ENSDARG00000071551) #12	desi1b (ENSDARG00000089529) #13	ENSDARG00000088204	mrtfab (ENSDARG00000076229) ##32	rgs9b (ENSDARG00000045156)	ENSDARG00000045157	grid2ipb (ENSDARG00000095603)	zdhhc4 (ENSDARG00000045159)	pgp (ENSDARG00000029695)	ENSDARG00000114422
Clupeiformes	ANCESTRAL SPECIES	5	ENSGT00940000153861.b.a	ENSGT00940000155813.i.b #35	ENSGT00390000013698	ENSGT00940000160068.a.b	ENSGT00940000158369	ENSGT00390000018509.b	ENSGT00940000153137.b	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.a	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b	ENSGT00650000094704	ENSGT00940000153239.B #12	ENSGT00730000111100.a.b #13	ENSGT00940000163663.A.b	ENSGT00950000182979.a.a.a.b ##32	ENSGT00940000156505.s	ENSGT00940000157054	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093
Atlantic herring	MODERN SPECIES	15	ENSCHAG00000027067	pdap1a (ENSCHAG00000027070)	ENSCHAG00000027071	slc16a8 (ENSCHAG00000002475)	cby1 (ENSCHAG00000002661)	PLBD1 (ENSCHAG00000002885)	ENSCHAG00000003583	ENSCHAG00000003753	ENSCHAG00000007018	csdc2a (ENSCHAG00000007095) #15	aco2 (ENSCHAG00000007164) #17	ENSCHAG00000009075	phf5a (ENSCHAG00000009088) #18	tefa (ENSCHAG00000009131) #20	ZC3H7B (ENSCHAG00000009150) #21	rangap1b (ENSCHAG00000009208) #22	chadlb (ENSCHAG00000009315)	l3mbtl2 (ENSCHAG00000009331) #24	EP300 (ENSCHAG00000010123) #25	ENSCHAG00000012460	josd1 (ENSCHAG00000012467)	ENSCHAG00000012482	xrcc6 (ENSCHAG00000012490) #12	desi1b (ENSCHAG00000012716) #13	ENSCHAG00000012726	mrtfab (ENSCHAG00000012744) ##32	rgs9b (ENSCHAG00000012811)	gna13a (ENSCHAG00000013606)	AMZ2 (ENSCHAG00000013631)	slc16a6a (ENSCHAG00000013846)	arsg (ENSCHAG00000013856)
Osteoglossiformes	ANCESTRAL SPECIES	64	ENSGT00940000153536.a.a.a.b	ENSGT00940000155813.i.a #35	ENSGT00940000157763	ENSGT00940000160068.a.a	ENSGT00940000158369.a.b	ENSGT00940000163472	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT01030000235186	ENSGT00940000155955.C.i.a	ENSGT00390000000022.b.a.b #15	ENSGT00390000004383 #16	ENSGT00940000154208.d.m #19	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277.c	ENSGT00940000153840.a.b #24	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a.k #25	ENSGT00940000158365.f.b	ENSGT00390000009228.b	ENSGT00940000163663.A.a	ENSGT00950000182979.a.a.a.a ##32	ENSGT00920000149129 #30
Asian bonytongue	MODERN SPECIES	12	ENSSFOG00015013173 #35	ENSSFOG00015013221	ENSSFOG00015030985	SH3BP1 (ENSSFOG00015013246)	pdap1a (ENSSFOG00015013279)	slc16a8 (ENSSFOG00015013299)	cby1 (ENSSFOG00015030699)	PLBD1 (ENSSFOG00015013345)	ENSSFOG00015026157	GUCY2C (ENSSFOG00015013494)	PMM1 (ENSSFOG00015013657) #14	CSDC2 (ENSSFOG00015011532) #15	aco2 (ENSSFOG00015013704) #17	phf5a (ENSSFOG00015013765) #18	tefa (ENSSFOG00015023219) #20	rangap1b (ENSSFOG00015013842) #22	chadlb (ENSSFOG00015013966)	l3mbtl2 (ENSSFOG00015029446) #24	ENSSFOG00015024363 #26	st13 (ENSSFOG00015014040) #29	EP300 (ENSSFOG00015014129) #25	ENSSFOG00015030505	xrcc6 (ENSSFOG00015014409) #12	ENSSFOG00015014021 #26	l3mbtl2 (ENSSFOG00015030235) #24	desi1a (ENSSFOG00015029550) #13	ENSSFOG00015004534	mrtfab (ENSSFOG00015004553) ##32	dnal4b (ENSSFOG00015004593)	nptxrb (ENSSFOG00015025949)	cbx6a (ENSSFOG00015032962)
P. kingsleyae	MODERN SPECIES	141	ENSPKIG00000002717	ENSPKIG00000002731	ENSPKIG00000002746	pdap1a (ENSPKIG00000002773)	cby1 (ENSPKIG00000002813)	ENSPKIG00000002853	ENSPKIG00000002915	PMM1 (ENSPKIG00000003003) #14	CSDC2 (ENSPKIG00000003033) #15	aco2 (ENSPKIG00000003055) #17	phf5a (ENSPKIG00000003100) #18	TOB2 (ENSPKIG00000003127) #19	tefa (ENSPKIG00000003161) #20	ZC3H7B (ENSPKIG00000003219) #21	ENSPKIG00000003296	rangap1b (ENSPKIG00000003343) #22	chadlb (ENSPKIG00000003436)	l3mbtl2 (ENSPKIG00000003503) #24	ENSPKIG00000003639 #26	st13 (ENSPKIG00000003681) #29	xpnpep3 (ENSPKIG00000003746) #27	EP300 (ENSPKIG00000003816) #25	ENSPKIG00000003942	xrcc6 (ENSPKIG00000003974) #12	desi1a (ENSPKIG00000004018) #13	ENSPKIG00000004031	mrtfab (ENSPKIG00000004053) ##32	si:ch1073-357b18.4 (ENSPKIG00000004077)	dnal4b (ENSPKIG00000004101)	nptxrb (ENSPKIG00000004121)	CBX6 (ENSPKIG00000004143)
Osteoglossocephalai	ANCESTRAL SPECIES	47	ENSGT00940000157763	ENSGT00940000160068.a.a	ENSGT00940000163472	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT01030000235186	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00390000000022.b.a.b #15	ENSGT00940000154892.m.b #17	ENSGT00390000018518 #18	ENSGT00940000156578.a.b #20	ENSGT00390000018542.a.a #21	ENSGT00440000039203.i #22	ENSGT00940000165277	ENSGT00940000153840.a.b #24	ENSGT00940000155497.a.b #25	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.a	ENSGT00390000009228.b
Clupeocephala	ANCESTRAL SPECIES	5	ENSGT00940000160068.a.a	ENSGT00940000163472	ENSGT00940000154393	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT01030000235186	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00730000111100.a.a #13	ENSGT00940000163663.A.a	ENSGT00950000182979.a.a.a.a ##32	ENSGT00920000149129 #30	ENSGT01100000263483.F.b.a.b	ENSGT00940000166738	ENSGT00950000182951.A.a.b.b	ENSGT00940000161265.e.a	ENSGT01060000248591.a.a.a.b.a
Otomorpha	ANCESTRAL SPECIES	19	ENSGT00390000010415	ENSGT00940000156057.s.b	ENSGT00940000160068.a.a	ENSGT00940000163472	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT01030000235186	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00730000111100.a.a #13	ENSGT00940000163663.A.a	ENSGT00950000182979.a.a.a.a ##32	ENSGT00920000149129 #30	ENSGT01100000263483.F.b.a.b	ENSGT00940000169047	ENSGT00940000166738	ENSGT00940000161265.e.a	ENSGT01060000248591.a.a.a.b.a
Clupeiformes	ANCESTRAL SPECIES	98	ENSGT00940000153536.a.a.a.b	ENSGT00940000155813.i.a #35	ENSGT00940000157763	ENSGT00940000160068.a.a	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT01030000235186	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00730000111100.a.a #13	ENSGT00940000163663.A.a	ENSGT00950000182979.a.a.a.a ##32	ENSGT00920000149129 #30	ENSGT01100000263483.F.b.a.b
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	17	pkn1b (ENSDCDG00000016321)	ENSDCDG00000020239	ENSDCDG00000020243	LRRC8E (ENSDCDG00000020248)	DDX39A (ENSDCDG00000020253)	ENSDCDG00000020274	txn2 (ENSDCDG00000020323)	PMM1 (ENSDCDG00000020325) #14	CSDC2 (ENSDCDG00000020329) #15	polr3h (ENSDCDG00000020332) #16	aco2 (ENSDCDG00000020338) #17	TOB2 (ENSDCDG00000020474) #19	tefb (ENSDCDG00000020475) #20	zc3h7ba (ENSDCDG00000020479) #21	ENSDCDG00000020482	rangap1a (ENSDCDG00000020487) #22	rbx1 (ENSDCDG00000020493) #26	st13 (ENSDCDG00000020512) #29	rangap1a (ENSDCDG00000020517) #22	xpnpep3 (ENSDCDG00000020525) #27	EP300 (ENSDCDG00000020597) #25	cbx7a (ENSDCDG00000022210)	desi1a (ENSDCDG00000022216) #13	ENSDCDG00000022219	ENSDCDG00000022228 ##32	ENSDCDG00000022241 #30	ENSDCDG00000022246 ##32	ENSDCDG00000022251	MGAT5B (ENSDCDG00000022275)	ENSDCDG00000022397	PRPSAP1 (ENSDCDG00000022403)
Denticle herring	MODERN SPECIES	17	LRRC8E (ENSDCDG00000020248)	DDX39A (ENSDCDG00000020253)	ENSDCDG00000020274	txn2 (ENSDCDG00000020323)	PMM1 (ENSDCDG00000020325) #14	CSDC2 (ENSDCDG00000020329) #15	polr3h (ENSDCDG00000020332) #16	aco2 (ENSDCDG00000020338) #17	TOB2 (ENSDCDG00000020474) #19	tefb (ENSDCDG00000020475) #20	zc3h7ba (ENSDCDG00000020479) #21	ENSDCDG00000020482	rangap1a (ENSDCDG00000020487) #22	rbx1 (ENSDCDG00000020493) #26	st13 (ENSDCDG00000020512) #29	rangap1a (ENSDCDG00000020517) #22	xpnpep3 (ENSDCDG00000020525) #27	EP300 (ENSDCDG00000020597) #25	cbx7a (ENSDCDG00000022210)	desi1a (ENSDCDG00000022216) #13	ENSDCDG00000022219	ENSDCDG00000022228 ##32	ENSDCDG00000022241 #30	ENSDCDG00000022246 ##32	ENSDCDG00000022251	MGAT5B (ENSDCDG00000022275)	ENSDCDG00000022397	PRPSAP1 (ENSDCDG00000022403)	sco1 (ENSDCDG00000022610)	gas7a (ENSDCDG00000022624)	rcvrna (ENSDCDG00000022931)
Atlantic herring	MODERN SPECIES								pick1 (ENSCHAG00000016967)	ENSCHAG00000016949	PMM1 (ENSCHAG00000016917) #14	CSDC2 (ENSCHAG00000016896) #15	polr3h (ENSCHAG00000016873) #16	aco2 (ENSCHAG00000016072) #17	TOB2 (ENSCHAG00000016047) #19	tefb (ENSCHAG00000016042) #20	ZC3H7B (ENSCHAG00000015881) #21	rangap1a (ENSCHAG00000015765) #22	ENSCHAG00000015706	rbx1 (ENSCHAG00000015674) #26	st13 (ENSCHAG00000015658) #29	ENSCHAG00000015656	xpnpep3 (ENSCHAG00000015345) #27	EP300 (ENSCHAG00000014925) #25	ENSCHAG00000014912	desi1a (ENSCHAG00000014899) #13	ENSCHAG00000014884	ENSCHAG00000014868 ##32	slc25a17 (ENSCHAG00000014815) #30	ENSCHAG00000014813	ENSCHAG00000014801	ENSCHAG00000014788	ENSCHAG00000014779
Otophysi	ANCESTRAL SPECIES	120	ENSGT00390000010415	ENSGT00940000156057.s.b	ENSGT00940000160068.a.a	ENSGT00940000163472.i.a.b.b.a.a.b.b	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT01030000235186	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.v.a	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a	ENSGT00530000063861.a	ENSGT00940000154990.fb.b	ENSGT00940000168611	ENSGT00950000183036.b.f	ENSGT00940000160152
Characiphysae	ANCESTRAL SPECIES	26	ENSGT00990000204364	ENSGT00390000018397	ENSGT00950000182818.D	ENSGT00940000159417	ENSGT01030000234570.d.b.a.b.b.a.a	ENSGT00530000063688.b.nb.b	ENSGT00950000182950.C	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.v.a	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a	ENSGT00530000063861.a	ENSGT00940000154990.fb.b	ENSGT00940000168611	ENSGT00950000183036.b.f	ENSGT00940000155858.e	ENSGT00390000012267	ENSGT00940000160152	ENSGT00940000161195.a.a
Characiphysae_b	ANCESTRAL SPECIES	17	ENSGT00990000204364	ENSGT00390000018397	ENSGT00950000182818.D	ENSGT00940000159417	ENSGT01030000234570.d.b.a.b.b.a.a	ENSGT00530000063688.b.nb.b	ENSGT00950000182950.C	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.v.a	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a	ENSGT00530000063861.a	ENSGT00940000154990.fb.b	ENSGT00940000168611	ENSGT00950000183036.b.f	ENSGT00940000155858.e	ENSGT00390000012267	ENSGT00940000160152	ENSGT00940000161195.a.a
Characoidei	ANCESTRAL SPECIES	90	ENSGT00990000204364	ENSGT00390000018397	ENSGT00950000182818.D	ENSGT00940000159417	ENSGT01030000234570.d.b.a.b.b.a.a	ENSGT00530000063688.b.nb.b	ENSGT00950000182950.C	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.v.a	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a	ENSGT00530000063861.a	ENSGT00940000154990.fb.b	ENSGT00940000168611	ENSGT00950000183036.b.f	ENSGT00390000000976	ENSGT00530000063960	ENSGT00940000155858.e	ENSGT00390000012267
Red-bellied piranha	MODERN SPECIES	295	cdc27 (ENSPNAG00000013571)	ENSPNAG00000013583	PTCHD3 (ENSPNAG00000002837)	ENSPNAG00000013604	ENSPNAG00000006416	ENSPNAG00000013638	ENSPNAG00000013652	GUCY2C (ENSPNAG00000002932)	PMM1 (ENSPNAG00000002947) #14	CSDC2 (ENSPNAG00000013797) #15	polr3h (ENSPNAG00000004860) #16	aco2 (ENSPNAG00000013876) #17	TOB2 (ENSPNAG00000007174) #19	tefb (ENSPNAG00000013890) #20	zc3h7ba (ENSPNAG00000013903) #21	rangap1a (ENSPNAG00000013921) #22	slc25a38a (ENSPNAG00000002998)	MYH9 (ENSPNAG00000014179)	txn2 (ENSPNAG00000003052)	ENSPNAG00000003055	ddx39ab (ENSPNAG00000014271)	ENSPNAG00000014282	ENSPNAG00000014299	ENSPNAG00000014328	pkn1b (ENSPNAG00000014421)
Mexicana tetra	MODERN SPECIES	15							gmeb1 (ENSAMXG00000015681)	GUCY2C (ENSAMXG00000015646)	PMM1 (ENSAMXG00000029803) #14	CSDC2 (ENSAMXG00000030421) #15	polr3h (ENSAMXG00000015544) #16	ACO2 (ENSAMXG00000015485) #17	TOB2 (ENSAMXG00000031031) #19	tefb (ENSAMXG00000015442) #20	zc3h7ba (ENSAMXG00000015389) #21	rangap1a (ENSAMXG00000015355) #22	slc25a38a (ENSAMXG00000030384)	MYH9 (ENSAMXG00000015296)	txn2 (ENSAMXG00000038781)	ENSAMXG00000015267	ddx39ab (ENSAMXG00000018631)	ENSAMXG00000015240	ENSAMXG00000033415	ENSAMXG00000015228	ENSAMXG00000015212	pkn1b (ENSAMXG00000015189)	ENSAMXG00000029303	MCOLN1 (ENSAMXG00000015134)	trir (ENSAMXG00000042277)	ubn2b (ENSAMXG00000015063)	TRAPPC5 (ENSAMXG00000038506)
Electric eel	MODERN SPECIES	408					ENSEEEG00000000096	ENSEEEG00000024522	GUCY2C (ENSEEEG00000024521)	PMM1 (ENSEEEG00000024519) #14	ENSEEEG00000024518	CSDC2 (ENSEEEG00000024517) #15	polr3h (ENSEEEG00000024516) #16	ACO2 (ENSEEEG00000024514) #17	TOB2 (ENSEEEG00000024513) #19	tefb (ENSEEEG00000024512) #20	zc3h7ba (ENSEEEG00000024511) #21	rangap1a (ENSEEEG00000024510) #22	slc25a38a (ENSEEEG00000024509)	MYH9 (ENSEEEG00000024134)	txn2 (ENSEEEG00000023942)	ENSEEEG00000023941	ddx39ab (ENSEEEG00000023939)	ENSEEEG00000023934	ENSEEEG00000023931	pkn1b (ENSEEEG00000023912)	ENSEEEG00000023897	MCOLN1 (ENSEEEG00000023868)	TRAPPC5 (ENSEEEG00000023865)	ubn2b (ENSEEEG00000023864)	trir (ENSEEEG00000023863)	hook2 (ENSEEEG00000023861)	junbb (ENSEEEG00000023857)
Channel catfish	MODERN SPECIES	3	ENSIPUG00000019328	ENSIPUG00000019380	ENSIPUG00000019412	ENSIPUG00000019439	ENSIPUG00000019494	ENSIPUG00000019540	ENSIPUG00000019548	GUCY2C (ENSIPUG00000019587)	PMM1 (ENSIPUG00000019726) #14	ENSIPUG00000019740 #15	ENSIPUG00000019747	polr3h (ENSIPUG00000019750) #16	TOB2 (ENSIPUG00000019765) #19	TEF (ENSIPUG00000019782) #20	zc3h7ba (ENSIPUG00000019805) #21	RANGAP1 (ENSIPUG00000019855) #22	slc25a38a (ENSIPUG00000021230)	MYH9 (ENSIPUG00000021243)	txn2 (ENSIPUG00000021332)	ENSIPUG00000021335	DDX39A (ENSIPUG00000021341)	ENSIPUG00000021400	ENSIPUG00000021404	ENSIPUG00000021407	ENSIPUG00000021411	pkn1b (ENSIPUG00000021417)	ENSIPUG00000021440	MCOLN1 (ENSIPUG00000021446)	TRAPPC5 (ENSIPUG00000021452)	ubn2b (ENSIPUG00000021459)	c12h19orf43 (ENSIPUG00000021520)
Cyprinoidei	ANCESTRAL SPECIES	163										ENSGT00390000002918.a.b.d.a #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT01090000260029.a.b.b.b.a.a.a.a.b.a.b.a.b	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.v.a	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a	ENSGT00530000063861.a	ENSGT00940000154990.fb.b	ENSGT00940000168611	ENSGT00950000183036.b.f
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	187	ENSGT00940000155813.i.a.a #35	ENSGT00940000162996.i.a.b.a.a	ENSGT00940000157763.m	ENSGT00940000160068.a.a.b.b	ENSGT00940000163472.i.a.b.b.a.a.b.b.b.a.a.a.a.a.a.b.a.b.a	ENSGT00950000183040.B.g	ENSGT00530000063509.A.g.g	ENSGT01030000235186.a	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b.d.a.a #14	ENSGT00390000000022.b.a.a.a #15	ENSGT00390000004383.k #16	ENSGT00940000154208.d.k #19	ENSGT00940000156578.a.a.d #20	ENSGT00390000018542.a.b.c #21	ENSGT00440000039203.j.c #22	ENSGT01090000260029.a.b.b.b.a.a.a.a.b.a.b.a.b.b.b	ENSGT00550000075117.m.b.a	ENSGT00940000155632.o	ENSGT00530000064086.w	ENSGT01030000234583.a.a.c.b.a.a.a.b.b.a.a.a.a.a.a.a.a.b.a.a.a.b.a.b.b	ENSGT00940000165172.a.c	ENSGT00940000154912.v.a.b	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a	ENSGT00530000063861.a	ENSGT00940000177829	ENSGT00940000154990.fb.b.h	ENSGT00940000168611.a	ENSGT00950000183036.b.f.c.a	ENSGT00940000160987.e.b.a.b.a
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	50	ENSCARG00000069475	PMM1 (ENSCARG00000069537) #14	CSDC2 (ENSCARG00000069541) #15	polr3h (ENSCARG00000069548) #16	TOB2 (ENSCARG00000069553) #19	tefb (ENSCARG00000069555) #20	ENSCARG00000025400	ENSCARG00000025452	ENSCARG00000025459	ENSCARG00000025463	MYH9 (ENSCARG00000025616)	ENSCARG00000030225	ENSCARG00000030230	ENSCARG00000030234	ENSCARG00000030242	rangap1a (ENSCARG00000030280) #22	ENSCARG00000030360	txn2 (ENSCARG00000030363)	ENSCARG00000030367	ENSCARG00000030402	ddx39ab (ENSCARG00000030415)	ENSCARG00000030543	ENSCARG00000030550	ENSCARG00000030555	ENSCARG00000030563	pkn1b (ENSCARG00000030600)	ENSCARG00000031189	MCOLN1 (ENSCARG00000031247)	ENSCARG00000031624	ENSCARG00000031627	ENSCARG00000031631
Goldfish	MODERN SPECIES	50	EMP1 (ENSCARG00000035905)	ENSCARG00000035817	ENSCARG00000035733	ENSCARG00000035712	ENSCARG00000035704	ENSCARG00000035648	ENSCARG00000035626	ENSCARG00000035578	rrp7a (ENSCARG00000035554)	ENSCARG00000035548	ENSCARG00000035536	ENSCARG00000035532	ENSCARG00000035524	ENSCARG00000035521	ENSCARG00000035517	rangap1a (ENSCARG00000034790) #22	ENSCARG00000034759	MYH9 (ENSCARG00000031705)	txn2 (ENSCARG00000031598)	ENSCARG00000031586	ENSCARG00000031581	ddx39ab (ENSCARG00000031454)	ENSCARG00000031413	ENSCARG00000031391	ENSCARG00000031341	PMM1 (ENSCARG00000031301) #14	ENSCARG00000029101	ENSCARG00000029031	plbd1a (ENSCARG00000028639)	pick1 (ENSCARG00000028518)	ENSCARG00000028505
Cyprininae_a	ANCESTRAL SPECIES	310													ENSGT00940000154208.d.k #19	ENSGT00940000156578.a.a.d #20	ENSGT00390000018542.a.b.c #21	ENSGT00440000039203.j.c #22	ENSGT01090000260029.a.b.b.b.a.a.a.a.b.a.b.a.b.b.b	ENSGT00550000075117.m.b.a	ENSGT00940000155632.o.o	ENSGT00530000064086.w	ENSGT01030000234583.a.a.c.b.a.a.a.b.b.a.a.a.a.a.a.a.a.b.a.a.a.b.a.b.b	ENSGT00940000165172.a.c	ENSGT00940000154912.v.a.b	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a	ENSGT00530000063861.a	ENSGT00940000154990.fb.b.h	ENSGT00940000168611.a	ENSGT00950000183036.b.f.c.a	ENSGT00940000160987.e.b.a.b.a	ENSGT00940000155858.e.b
Common carp reference	MODERN SPECIES	1	ENSCCRG00000063574	pick1 (ENSCCRG00000062296)	plbd1a (ENSCCRG00000058811)	ENSCCRG00000002398	ENSCCRG00000052883	ENSCCRG00000078580 #14	ENSCCRG00000058766 #15	ENSCCRG00000068339 #16	TOB2 (ENSCCRG00000073108) #19	tefb (ENSCCRG00000025311) #20	ENSCCRG00000024015	ENSCCRG00000054860	ENSCCRG00000062392	ENSCCRG00000058706	zc3h7ba (ENSCCRG00000042432) #21	rangap1a (ENSCCRG00000042433) #22	ENSCCRG00000074857	ENSCCRG00000050806	ENSCCRG00000009432	ENSCCRG00000054875	ENSCCRG00000043882	ENSCCRG00000050601	txn2 (ENSCCRG00000078674)	ENSCCRG00000021691	ENSCCRG00000021683	ddx39ab (ENSCCRG00000057584)	ENSCCRG00000021677	ENSCCRG00000077759	ENSCCRG00000022149	ENSCCRG00000021662	pkn1b (ENSCCRG00000054870)
Golden-line barbel	MODERN SPECIES	886	ENSSGRG00000044068	ENSSGRG00000044069	ENSSGRG00000044071	ENSSGRG00000044072	ENSSGRG00000044073	ENSSGRG00000044077 #35	ENSSGRG00000044078	ENSSGRG00000044081	plbd1a (ENSSGRG00000044086)	ENSSGRG00000044472	PMM1 (ENSSGRG00000044852) #14	CSDC2 (ENSSGRG00000044853) #15	TOB2 (ENSSGRG00000044855) #19	tefb (ENSSGRG00000044856) #20	zc3h7ba (ENSSGRG00000044858) #21	rangap1a (ENSSGRG00000044922) #22	ENSSGRG00000045097	slc25a38a (ENSSGRG00000045098)	MYH9 (ENSSGRG00000045100)	txn2 (ENSSGRG00000045651)	ENSSGRG00000045652	ENSSGRG00000045662	ENSSGRG00000045690	ddx39ab (ENSSGRG00000045695)	ENSSGRG00000045809	ENSSGRG00000045810	ENSSGRG00000045812	pkn1b (ENSSGRG00000045821)	ENSSGRG00000045934	MCOLN1 (ENSSGRG00000045937)	zgc:136767 (ENSSGRG00000046005)
Cyprininae	ANCESTRAL SPECIES	647						ENSGT00940000160068.a.a.a	ENSGT00940000163472.i.a.b.b.a.a.b.b.b.a.a.a.a.a.a.b.a.a.a	ENSGT00950000183040.B.h	ENSGT00530000063509.A.g.h	ENSGT01030000235186.b	ENSGT00390000002918.a.b.d.a.b #14	ENSGT00390000004383.l #16	ENSGT00940000154208.d.l #19	ENSGT00940000156578.a.a.c #20	ENSGT00390000018542.a.b.d #21	ENSGT00440000039203.j.d #22	ENSGT01090000260029.a.b.b.b.a.a.a.a.b.a.b.a.b.a.a.a.b.a.a.b	ENSGT01090000260029.a.b.b.b.a.a.a.a.b.a.b.a.b.a.a.a.b.a.a.a.a	ENSGT00550000075117.m.b.b
Cyprininae_a	ANCESTRAL SPECIES	311	ENSGT00940000160068.a.a.b.b	ENSGT00940000163472.i.a.b.b.a.a.b.b.b.a.a.a.a.a.a.b.a.b.a	ENSGT00950000183040.B.g	ENSGT00530000063509.A.g.g	ENSGT01030000235186.a	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b.d.b #14	ENSGT00390000000022.b.a.a.b #15	ENSGT00390000004383.k #16	ENSGT00390000002918.a.b.d.a.a #14	ENSGT00390000000022.b.a.a.a #15	ENSGT00390000004383.l #16	ENSGT00940000154208.d.l #19	ENSGT00940000156578.a.a.c #20	ENSGT00390000018542.a.b.d #21	ENSGT00440000039203.j.d #22	ENSGT01090000260029.a.b.b.b.a.a.a.a.b.a.b.a.b.a.a.a.b.a.a.b	ENSGT01090000260029.a.b.b.b.a.a.a.a.b.a.b.a.b.a.a.a.b.a.a.a.a	ENSGT01090000260029.a.b.b.b.a.a.a.a.b.a.b.a.b.a.a.a.b.a.b	ENSGT00550000075117.m.b.b	ENSGT00940000155632.o.p	ENSGT00530000064086.x	ENSGT01030000234583.a.a.c.b.a.a.a.b.b.a.a.a.a.a.a.a.a.b.a.a.a.b.b.a	ENSGT00940000165172.a.d	ENSGT00940000154912.v.a.a	ENSGT00940000154990.fb.b.g.a	ENSGT00940000168611.b	ENSGT00940000155858.e.a	ENSGT00390000012267.j
Common carp reference	MODERN SPECIES	3	ENSCCRG00000036880	ENSCCRG00000001253	ENSCCRG00000068190	pick1 (ENSCCRG00000002373)	plbd1a (ENSCCRG00000057940)	ENSCCRG00000001157	ENSCCRG00000001151 #14	ENSCCRG00000079466 #15	ENSCCRG00000001130 #16	TOB2 (ENSCCRG00000073900) #19	tefb (ENSCCRG00000056476) #20	ENSCCRG00000073477	ENSCCRG00000080424	ENSCCRG00000001283	zc3h7ba (ENSCCRG00000001289) #21	rangap1a (ENSCCRG00000001317) #22	ENSCCRG00000057560	ENSCCRG00000001372	ENSCCRG00000068569	slc25a38a (ENSCCRG00000075945)	ENSCCRG00000044135	ENSCCRG00000054297	ENSCCRG00000062308	ddx39ab (ENSCCRG00000080061)	ENSCCRG00000078792	pkn1b (ENSCCRG00000021721)	ENSCCRG00000066526	ENSCCRG00000078673	ENSCCRG00000082409	ENSCCRG00000060221	ubn2b (ENSCCRG00000011530)
Golden-line barbel	MODERN SPECIES	1798													ENSSGRG00000016950	ENSSGRG00000016949	zc3h7ba (ENSSGRG00000016947) #21	rangap1a (ENSSGRG00000016869) #22	ENSSGRG00000016862	ENSSGRG00000016861	ENSSGRG00000016859	ENSSGRG00000016858	slc25a38a (ENSSGRG00000016855)	MYH9 (ENSSGRG00000005216)
Zebrafish	MODERN SPECIES	18	ENSDARG00000014320	PMM1 (ENSDARG00000038398) #14	ENSDARG00000115257	ENSDARG00000074607	ENSDARG00000060655	ENSDARG00000038392	ENSDARG00000115941	ENSDARG00000097588	ENSDARG00000093476	ENSDARG00000095739	ENSDARG00000079245	ENSDARG00000095076	ENSDARG00000078832	ENSDARG00000052255	zc3h7ba (ENSDARG00000098540) #21	rangap1a (ENSDARG00000041317) #22	ftr43 (ENSDARG00000076106)	ENSDARG00000115041	ENSDARG00000116623	ENSDARG00000054153	ENSDARG00000112545	slc25a38a (ENSDARG00000059805)	ENSDARG00000111833	ENSDARG00000073901	ENSDARG00000058700	ENSDARG00000115870 #14	CSDC2 (ENSDARG00000100167) #15	polr3h (ENSDARG00000102590) #16	tefb (ENSDARG00000098103) #20	ENSDARG00000092778	MYH9 (ENSDARG00000001014)
Euteleosteomorpha	ANCESTRAL SPECIES		ENSGT00940000160068.a.a	ENSGT00940000163472	ENSGT00940000154393	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT01030000235186	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00730000111100.a.a #13	ENSGT00940000163663.A.a	ENSGT00950000182979.a.a.a.a ##32	ENSGT00920000149129 #30	ENSGT01100000263483.F.b.a.b	ENSGT00940000166738	ENSGT00950000182951.A.a.b.b	ENSGT00940000161265.e.a	ENSGT01060000248591.a.a.a.b.a
Acanthomorphata	ANCESTRAL SPECIES	25	ENSGT00940000160068.a.a	ENSGT00940000163472	ENSGT00940000154393	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.b #20	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099
Euacanthomorphacea	ANCESTRAL SPECIES	5	ENSGT00940000160068.a.a	ENSGT00940000154393	ENSGT00940000163472	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT00940000176980	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099
Percomorphaceae	ANCESTRAL SPECIES	3	ENSGT00940000160068.a.a	ENSGT00940000163472	ENSGT00940000154393	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT00940000176980	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099
Tiger tail seahorse	MODERN SPECIES	147															ENSHCOG00000014089 #21	rangap1a (ENSHCOG00000014138) #22	ENSHCOG00000014158	rbx1 (ENSHCOG00000014182) #26	st13 (ENSHCOG00000014188) #29	xpnpep3 (ENSHCOG00000014196) #27	EP300 (ENSHCOG00000014245) #25	pold1 (ENSHCOG00000014290)	znhit1 (ENSHCOG00000014301)	gys1 (ENSHCOG00000014348)	aspdh (ENSHCOG00000014357)	tmem86b (ENSHCOG00000014359)	hspbp1 (ENSHCOG00000014379)	tufm (ENSHCOG00000014418)	ENSHCOG00000014453	ENSHCOG00000014468	natd1 (ENSHCOG00000014482)
Percomorphaceae_B	ANCESTRAL SPECIES	2	ENSGT00940000163472.e.a	ENSGT00940000154393.t	ENSGT00940000163472.f	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT00940000176980	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099
Ovalentaria	ANCESTRAL SPECIES	1	ENSGT00940000157763	ENSGT00940000160068.a.a	ENSGT00940000155025.A	ENSGT00940000163472.e.a	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT00940000176980	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099
Atherinomorphae	ANCESTRAL SPECIES	6	ENSGT00940000160068.a.a	ENSGT00940000154393.t	ENSGT00940000163472.e.a	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT00940000176980	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099
Cyprinodontiformes	ANCESTRAL SPECIES	3	ENSGT00940000160068.a.a	ENSGT00940000154393.t	ENSGT00940000163472.e.a	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT00940000176980	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099
Aplocheiloidei	ANCESTRAL SPECIES	30	ENSGT00940000157763	ENSGT00940000160068.a.a	ENSGT00940000163472.e.a	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT00940000176980	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099
Mangrove rivulus	MODERN SPECIES	37	ENSKMAG00000014531	ENSKMAG00000014548	ENSKMAG00000014570	pick1 (ENSKMAG00000014584)	plbd1a (ENSKMAG00000014628)	GUCY2C (ENSKMAG00000014658)	PMM1 (ENSKMAG00000014751) #14	CSDC2 (ENSKMAG00000014778) #15	polr3h (ENSKMAG00000014797) #16	aco2 (ENSKMAG00000014823) #17	TOB2 (ENSKMAG00000014878) #19	tefb (ENSKMAG00000014906) #20	ENSKMAG00000014923	ENSKMAG00000014939	zc3h7ba (ENSKMAG00000014972) #21	rangap1a (ENSKMAG00000015063) #22	ENSKMAG00000015130	rbx1 (ENSKMAG00000015160) #26	st13 (ENSKMAG00000015212) #29	xpnpep3 (ENSKMAG00000015289) #27	EP300 (ENSKMAG00000015334) #25	ENSKMAG00000015385	TOP3A (ENSKMAG00000015416)	smcr8a (ENSKMAG00000015470)	bud31 (ENSKMAG00000015481)	pdap1b (ENSKMAG00000015491)	shmt1 (ENSKMAG00000015534)	shmt1 (ENSKMAG00000015600)	cpsf4 (ENSKMAG00000015642)	atp5mf (ENSKMAG00000015662)	slc29a4a (ENSKMAG00000015698)
Turquoise killifish	MODERN SPECIES	1612	CDC42EP1 (ENSNFUG00015010815)	LGALS2 (ENSNFUG00015010808)	pick1 (ENSNFUG00015010789)	PLBD1 (ENSNFUG00015010459)	ENSNFUG00015010432	ENSNFUG00015009738	PMM1 (ENSNFUG00015009540) #14	CSDC2B (ENSNFUG00015009528) #15	aco2 (ENSNFUG00015009119) #17	TOB2 (ENSNFUG00015003730) #19	tefb (ENSNFUG00015003728) #20	ENSNFUG00015003725	ZC3H7B (ENSNFUG00015003711) #21	ENSNFUG00015003701	ENSNFUG00015003698	rangap1a (ENSNFUG00015003621) #22	RBX1 (ENSNFUG00015003594) #26	ST13 (ENSNFUG00015003586) #29	XPNPEP3 (ENSNFUG00015003571) #27	ENSNFUG00015003562	ENSNFUG00015003503 #25	cbx7a (ENSNFUG00015003485)	TOP3A (ENSNFUG00015003386)	SMCR8A (ENSNFUG00015003364)	BUD31 (ENSNFUG00015003359)	PDAP1B (ENSNFUG00015003354)	shmt1 (ENSNFUG00015003312)	CPSF4 (ENSNFUG00015003278)	AL928657.1 (ENSNFUG00015003273)	ENSNFUG00015003269	slc29a4a (ENSNFUG00015003258)
Cyprinodontoidei	ANCESTRAL SPECIES	22	ENSGT00940000160068.a.a	ENSGT00940000154393.t	ENSGT00940000163472.e.a	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT00940000176980	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b.k	ENSGT00390000002762.a.b.l	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b
Poeciliinae	ANCESTRAL SPECIES	1	ENSGT00940000163472.e.a.cb	ENSGT00940000154393.t	ENSGT00940000163472.e.a.bb.b	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT00940000176980	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b.k	ENSGT00390000002762.a.b.l	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b
Poecilia	ANCESTRAL SPECIES	18	ENSGT01100000263483.B.c.b.a.d	ENSGT00940000163472.e.a.cb	ENSGT00940000154393.t	ENSGT00940000163472.e.a.bb.b	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b.k	ENSGT00390000002762.a.b.l	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b
NAME_6	ANCESTRAL SPECIES	63					ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b.k	ENSGT00390000002762.a.b.l	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b
Amazon molly	MODERN SPECIES	600					ENSPFOG00000012988	pick1 (ENSPFOG00000013010)	plbd1a (ENSPFOG00000013077)	ENSPFOG00000013235	PMM1 (ENSPFOG00000013624) #14	CSDC2 (ENSPFOG00000013668) #15	polr3h (ENSPFOG00000013681) #16	aco2 (ENSPFOG00000013750) #17	TOB2 (ENSPFOG00000020913) #19	tefb (ENSPFOG00000013950) #20	ZC3H7B (ENSPFOG00000013982) #21	rangap1a (ENSPFOG00000014218) #22	ENSPFOG00000024598	rbx1 (ENSPFOG00000014301) #26	st13 (ENSPFOG00000014319) #29	xpnpep3 (ENSPFOG00000014371) #27	EP300 (ENSPFOG00000014408) #25	cbx7a (ENSPFOG00000014553)	TOP3A (ENSPFOG00000014577)	smcr8a (ENSPFOG00000014749)	bud31 (ENSPFOG00000014763)	pdap1b (ENSPFOG00000014776)	shmt1 (ENSPFOG00000014784)	shmt1 (ENSPFOG00000014911)	cpsf4 (ENSPFOG00000014912)	atp5mf (ENSPFOG00000014956)	slc29a4a (ENSPFOG00000014964)
Sailfin molly	MODERN SPECIES	1291					ENSPLAG00000017690	pick1 (ENSPLAG00000017685)	plbd1a (ENSPLAG00000017672)	ENSPLAG00000017627	PMM1 (ENSPLAG00000017536) #14	CSDC2 (ENSPLAG00000017520) #15	polr3h (ENSPLAG00000017503) #16	aco2 (ENSPLAG00000017481) #17	TOB2 (ENSPLAG00000017429) #19	tefb (ENSPLAG00000017390) #20	ZC3H7B (ENSPLAG00000017361) #21	rangap1a (ENSPLAG00000017353) #22	rbx1 (ENSPLAG00000017337) #26	st13 (ENSPLAG00000017332) #29	xpnpep3 (ENSPLAG00000017278) #27	EP300 (ENSPLAG00000017235) #25	ENSPLAG00000017183	ENSPLAG00000017180	TOP3A (ENSPLAG00000017166)	smcr8a (ENSPLAG00000017121)	bud31 (ENSPLAG00000017114)	pdap1b (ENSPLAG00000017099)	shmt1 (ENSPLAG00000017072)	shmt1 (ENSPLAG00000016671)
Guppy	MODERN SPECIES	460	ENSPREG00000017240	ENSPREG00000017251	ENSPREG00000017261	ENSPREG00000017267	ENSPREG00000017287	ENSPREG00000017300	ENSPREG00000017313	pick1 (ENSPREG00000017328)	plbd1a (ENSPREG00000017371)	ENSPREG00000017465	ENSPREG00000017556 #14	aco2 (ENSPREG00000017594) #17	TOB2 (ENSPREG00000017632) #19	tefb (ENSPREG00000017653) #20	ZC3H7B (ENSPREG00000017699) #21	rangap1a (ENSPREG00000017770) #22	rbx1 (ENSPREG00000017818) #26	st13 (ENSPREG00000017893) #29	xpnpep3 (ENSPREG00000017918) #27	EP300 (ENSPREG00000017942) #25	ENSPREG00000018018	TOP3A (ENSPREG00000018044)	smcr8a (ENSPREG00000018112)	bud31 (ENSPREG00000018122)	pdap1b (ENSPREG00000018130)	shmt1 (ENSPREG00000018149)	cpsf4 (ENSPREG00000018166)	atp5mf (ENSPREG00000018180)	slc29a4a (ENSPREG00000018228)	TNRC18 (ENSPREG00000018258)	actb (ENSPREG00000018292)
Platyfish	MODERN SPECIES	7	ENSXMAG00000000921	ENSXMAG00000023037	ENSXMAG00000028299	ENSXMAG00000000882	pick1 (ENSXMAG00000021740)	plbd1a (ENSXMAG00000002356)	ENSXMAG00000029868	ENSXMAG00000002368	PMM1 (ENSXMAG00000006944) #14	CSDC2 (ENSXMAG00000006935) #15	polr3h (ENSXMAG00000006921) #16	aco2 (ENSXMAG00000006870) #17	TOB2 (ENSXMAG00000021999) #19	tefb (ENSXMAG00000026333) #20	ZC3H7B (ENSXMAG00000022258) #21	rangap1a (ENSXMAG00000003726) #22	ENSXMAG00000025962	rbx1 (ENSXMAG00000025913) #26	st13 (ENSXMAG00000003718) #29	xpnpep3 (ENSXMAG00000003707) #27	EP300 (ENSXMAG00000003691) #25	cbx7a (ENSXMAG00000024328)	TOP3A (ENSXMAG00000003671)	smcr8a (ENSXMAG00000003670)	bud31 (ENSXMAG00000003664)	pdap1b (ENSXMAG00000003656)	shmt1 (ENSXMAG00000003644)	atp5mf (ENSXMAG00000022540)	cpsf4 (ENSXMAG00000024670)	slc29a4a (ENSXMAG00000025766)	TNRC18 (ENSXMAG00000000969)
NAME_4	ANCESTRAL SPECIES	36	ENSGT00940000157763	ENSGT00940000160068.a.a	ENSGT00940000163472.e.a	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT00940000176980	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b.k	ENSGT00390000002762.a.b.l	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b
Mummichog	MODERN SPECIES	519				ENSFHEG00000020190	pick1 (ENSFHEG00000020324)	plbd1a (ENSFHEG00000020340)	ENSFHEG00000020361	GUCY2C (ENSFHEG00000020451)	PMM1 (ENSFHEG00000000513) #14	CSDC2 (ENSFHEG00000020509) #15	polr3h (ENSFHEG00000020517) #16	aco2 (ENSFHEG00000020556) #17	TOB2 (ENSFHEG00000020565) #19	tefb (ENSFHEG00000020611) #20	ZC3H7B (ENSFHEG00000020629) #21	rangap1a (ENSFHEG00000020668) #22	ENSFHEG00000020674	rbx1 (ENSFHEG00000020681) #26	st13 (ENSFHEG00000020735) #29	xpnpep3 (ENSFHEG00000020798) #27	EP300 (ENSFHEG00000020956) #25	cbx7a (ENSFHEG00000020969)	TOP3A (ENSFHEG00000021049)	smcr8a (ENSFHEG00000021057)	bud31 (ENSFHEG00000021074)	pdap1b (ENSFHEG00000021098)	shmt1 (ENSFHEG00000021608)
Sheepshead minnow	MODERN SPECIES	518	BPTF (ENSCVAG00000011634)	grb2b (ENSCVAG00000011524)	ENSCVAG00000011478	ENSCVAG00000011422	pick1 (ENSCVAG00000011264)	plbd1a (ENSCVAG00000000994)	ENSCVAG00000011202	GUCY2C (ENSCVAG00000011169)	PMM1 (ENSCVAG00000011074) #14	CSDC2 (ENSCVAG00000011020) #15	polr3h (ENSCVAG00000010996) #16	aco2 (ENSCVAG00000010923) #17	TOB2 (ENSCVAG00000010698) #19	tefb (ENSCVAG00000010671) #20	ZC3H7B (ENSCVAG00000010642) #21	rangap1a (ENSCVAG00000010585) #22	ENSCVAG00000010467	rbx1 (ENSCVAG00000010410) #26	st13 (ENSCVAG00000010382) #29	xpnpep3 (ENSCVAG00000010347) #27	EP300 (ENSCVAG00000010266) #25	cbx7a (ENSCVAG00000010046)	TOP3A (ENSCVAG00000010000)	smcr8a (ENSCVAG00000009906)	bud31 (ENSCVAG00000009896)	pdap1b (ENSCVAG00000009872)
Oryzias	ANCESTRAL SPECIES		ENSGT00940000153536.a.a.a.b	ENSGT00940000155813.i.a #35	ENSGT00940000157763	ENSGT00940000160068.a.a	ENSGT00940000163472.e.a	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b.k #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099
Oryzias_b	ANCESTRAL SPECIES	30	ENSGT00940000153536.a.a.a.b	ENSGT00940000155813.i.a #35	ENSGT00940000157763	ENSGT00940000160068.a.a	ENSGT00940000163472.e.a	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b.k #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099
Indian medaka	DUPLICATION
Indian medaka	MODERN SPECIES	332															ENSOMEG00000016143	rangap1a (ENSOMEG00000000994) #22	ENSOMEG00000016273
Indian medaka	MODERN SPECIES	9	ENSOMEG00000006097	ENSOMEG00000006076	ENSOMEG00000006056	ENSOMEG00000006010	ENSOMEG00000005989	ENSOMEG00000005973	pick1 (ENSOMEG00000005960)	plbd1a (ENSOMEG00000000848)	ENSOMEG00000005911	PMM1 (ENSOMEG00000000966) #14	CSDC2 (ENSOMEG00000005779) #15	polr3h (ENSOMEG00000005764) #16	TOB2 (ENSOMEG00000005730) #19	tefb (ENSOMEG00000005710) #20	ZC3H7B (ENSOMEG00000005686) #21	RANGAP1 (ENSOMEG00000005637) #22	ENSOMEG00000005555	rbx1 (ENSOMEG00000005517) #26	st13 (ENSOMEG00000005496) #29	xpnpep3 (ENSOMEG00000005454) #27	EP300 (ENSOMEG00000005385) #25	cbx7a (ENSOMEG00000005289)	TOP3A (ENSOMEG00000005276)	smcr8a (ENSOMEG00000005241)	bud31 (ENSOMEG00000005234)	pdap1b (ENSOMEG00000005224)	shmt1 (ENSOMEG00000005205)	cpsf4 (ENSOMEG00000005176)	atp5mf (ENSOMEG00000005152)	slc29a4a (ENSOMEG00000005135)	TNRC18 (ENSOMEG00000005103)
Javanese ricefish	MODERN SPECIES	22	CSNK1E (ENSOJAG00000008427)	ENSOJAG00000008547 #35	ENSOJAG00000008613	ENSOJAG00000008633	ENSOJAG00000008651	ENSOJAG00000008678	pick1 (ENSOJAG00000008698)	plbd1a (ENSOJAG00000008831)	ENSOJAG00000009410	PMM1 (ENSOJAG00000009837) #14	CSDC2 (ENSOJAG00000009864) #15	polr3h (ENSOJAG00000009879) #16	TOB2 (ENSOJAG00000009927) #19	tefb (ENSOJAG00000009947) #20	zc3h7ba (ENSOJAG00000010004) #21	rangap1a (ENSOJAG00000010423) #22	ENSOJAG00000010896	rbx1 (ENSOJAG00000010942) #26	st13 (ENSOJAG00000010970) #29	xpnpep3 (ENSOJAG00000010994) #27	EP300 (ENSOJAG00000011158) #25	cbx7a (ENSOJAG00000012266)	smcr8a (ENSOJAG00000012988)	bud31 (ENSOJAG00000012994)	pdap1b (ENSOJAG00000013025)	shmt1 (ENSOJAG00000013039)	cpsf4 (ENSOJAG00000013354)	atp5mf (ENSOJAG00000013368)	slc29a4a (ENSOJAG00000013395)	ENSOJAG00000013405	ACTB (ENSOJAG00000013436)
Oryzias_a	DUPLICATION
Oryzias_a	ANCESTRAL SPECIES	20	ENSGT00940000157763	ENSGT00940000160068.a.a	ENSGT00940000163472.e.a.ib	ENSGT00940000163472.e.a.hb	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00940000156386.j	ENSGT00530000063509.A.g	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b.k #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j.g #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099
Chinese medaka	MODERN SPECIES	804					ENSOSIG00000004383	pick1 (ENSOSIG00000004387)	kif3a (ENSOSIG00000004484)	plbd1a (ENSOSIG00000005499)	ENSOSIG00000005773	PMM1 (ENSOSIG00000006008) #14	CSDC2 (ENSOSIG00000006074) #15	polr3h (ENSOSIG00000006078) #16	TOB2 (ENSOSIG00000006090) #19	tefb (ENSOSIG00000006092) #20	ZC3H7B (ENSOSIG00000006095) #21	RANGAP1 (ENSOSIG00000006257) #22	ENSOSIG00000006364	rbx1 (ENSOSIG00000006366) #26	st13 (ENSOSIG00000006370) #29	cbx7a (ENSOSIG00000006374)	EP300 (ENSOSIG00000006379) #25	xpnpep3 (ENSOSIG00000006405) #27	rangap1a (ENSOSIG00000006512) #22	ENSOSIG00000006573 #21
Japanese Medaka HdrR	MODERN SPECIES	22	ENSORLG00000027921	ENSORLG00000026701	ENSORLG00000029438	ENSORLG00000028787	pick1 (ENSORLG00000014315)	ENSORLG00000014337	ENSORLG00000014287	plbd1a (ENSORLG00000014266)	gucy2ca (ENSORLG00000014236)	ENSORLG00000014181 #14	CSDC2 (ENSORLG00000028829) #15	polr3h (ENSORLG00000014160) #16	TOB2 (ENSORLG00000014151) #19	tefb (ENSORLG00000014144) #20	ZC3H7B (ENSORLG00000014127) #21	rangap1a (ENSORLG00000028033) #22	ENSORLG00000014083	rbx1 (ENSORLG00000014060) #26	st13 (ENSORLG00000014052) #29	xpnpep3 (ENSORLG00000014010) #27	EP300 (ENSORLG00000013972) #25	cbx7a (ENSORLG00000026459)	TOP3A (ENSORLG00000013858)	smcr8a (ENSORLG00000013820)	bud31 (ENSORLG00000013809)	pdap1b (ENSORLG00000028511)	shmt1 (ENSORLG00000013776)	cpsf4 (ENSORLG00000022798)	atp5mf (ENSORLG00000023475)	ENSORLG00000027893	slc29a4a (ENSORLG00000013699)
Oryzias_a	ANCESTRAL SPECIES																	ENSGT00440000039203.j.h #22
Chinese medaka	MODERN SPECIES	804															ENSOSIG00000006573 #21	rangap1a (ENSOSIG00000006512) #22	xpnpep3 (ENSOSIG00000006405) #27	EP300 (ENSOSIG00000006379) #25	cbx7a (ENSOSIG00000006374)	st13 (ENSOSIG00000006370) #29	rbx1 (ENSOSIG00000006366) #26	ENSOSIG00000006364	RANGAP1 (ENSOSIG00000006257) #22	ZC3H7B (ENSOSIG00000006095) #21	tefb (ENSOSIG00000006092) #20	TOB2 (ENSOSIG00000006090) #19	polr3h (ENSOSIG00000006078) #16	CSDC2 (ENSOSIG00000006074) #15	PMM1 (ENSOSIG00000006008) #14	ENSOSIG00000005773	plbd1a (ENSOSIG00000005499)
Ovalentaria_B	ANCESTRAL SPECIES		ENSGT00940000160068.a.a	ENSGT00940000163472.e.a	ENSGT00940000154393.s.a	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT00940000176980	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099
Pomacentridae	ANCESTRAL SPECIES	31	ENSGT00940000157763	ENSGT00940000160068.a.a	ENSGT00940000163472.e.a	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT00940000176980	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099
Pomacentridae_A	ANCESTRAL SPECIES	21	ENSGT00940000157763	ENSGT00940000160068.a.a	ENSGT00940000163472.e.a	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT00940000176980	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099
Amphiprion	ANCESTRAL SPECIES	25	ENSGT00940000157763	ENSGT00940000160068.a.a	ENSGT00940000163472.e.a	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT00940000176980	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347.i #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099
Clown anemonefish	MODERN SPECIES	1054										CSDC2 (ENSAOCG00000018974) #15	polr3h (ENSAOCG00000019002) #16	aco2 (ENSAOCG00000019100) #17	TOB2 (ENSAOCG00000019128) #19	tefb (ENSAOCG00000019163) #20	ZC3H7B (ENSAOCG00000001982) #21	rangap1a (ENSAOCG00000019232) #22	ENSAOCG00000019273	rbx1 (ENSAOCG00000019283) #26	st13 (ENSAOCG00000019326) #29	xpnpep3 (ENSAOCG00000019344) #27	EP300 (ENSAOCG00000002684) #25	cbx7a (ENSAOCG00000019385)	TOP3A (ENSAOCG00000019482)	smcr8a (ENSAOCG00000019504)	bud31 (ENSAOCG00000019512)	pdap1b (ENSAOCG00000019535)	shmt1 (ENSAOCG00000019565)	cpsf4 (ENSAOCG00000019616)	atp5mf (ENSAOCG00000019630)	slc29a4a (ENSAOCG00000019686)
Orange clownfish	MODERN SPECIES	5	ENSAPEG00000012738	ENSAPEG00000012721	ENSAPEG00000012714	ENSAPEG00000012696	pick1 (ENSAPEG00000012674)	plbd1a (ENSAPEG00000012658)	ENSAPEG00000012644	ENSAPEG00000012588	PMM1 (ENSAPEG00000012560) #14	CSDC2 (ENSAPEG00000012534) #15	polr3h (ENSAPEG00000012507) #16	aco2 (ENSAPEG00000012427) #17	TOB2 (ENSAPEG00000012405) #19	tefb (ENSAPEG00000012377) #20	ZC3H7B (ENSAPEG00000012353) #21	rangap1a (ENSAPEG00000012296) #22	ENSAPEG00000012164	rbx1 (ENSAPEG00000012157) #26	st13 (ENSAPEG00000012108) #29	xpnpep3 (ENSAPEG00000012099) #27	EP300 (ENSAPEG00000011954) #25	cbx7a (ENSAPEG00000011936)	TOP3A (ENSAPEG00000011863)	smcr8a (ENSAPEG00000011852)	bud31 (ENSAPEG00000011830)	pdap1b (ENSAPEG00000011801)	shmt1 (ENSAPEG00000011740)	cpsf4 (ENSAPEG00000011679)	atp5mf (ENSAPEG00000011712)	ENSAPEG00000011672	SLC29A4 (ENSAPEG00000011616)
Spiny chromis	MODERN SPECIES	2004																rangap1a (ENSAPOG00000013924) #22	ENSAPOG00000013945	ENSAPOG00000013987	rbx1 (ENSAPOG00000013998) #26	st13 (ENSAPOG00000014010) #29	xpnpep3 (ENSAPOG00000014023) #27	EP300 (ENSAPOG00000014162) #25
Bicolor damselfish	MODERN SPECIES	1690										CSDC2 (ENSSPAG00000017991) #15	polr3h (ENSSPAG00000017974) #16	aco2 (ENSSPAG00000017882) #17	TOB2 (ENSSPAG00000017858) #19	tefb (ENSSPAG00000017829) #20	ZC3H7B (ENSSPAG00000017788) #21	rangap1a (ENSSPAG00000017748) #22	ENSSPAG00000017714	rbx1 (ENSSPAG00000017697) #26	st13 (ENSSPAG00000017642) #29	xpnpep3 (ENSSPAG00000017587) #27	EP300 (ENSSPAG00000017550) #25
Cichlidae	ANCESTRAL SPECIES	19	ENSGT00940000155537	ENSGT00940000158690	ENSGT00510000048032	ENSGT00950000183157.a.a.b.c	ENSGT00950000182960.a.a.b.e.a	ENSGT00940000157099	ENSGT00950000182898.a.b	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000004383 #16	ENSGT00390000000022.b.a.a #15	ENSGT00390000002918.a.b #14	ENSGT00940000155955.C.i.a	ENSGT00940000176980	ENSGT00530000063509.A.g	ENSGT00950000183040.B
Pseudocrenilabrinae	ANCESTRAL SPECIES	1	ENSGT00940000158690	ENSGT00510000048032	ENSGT00950000183157.a.a.b.c	ENSGT00950000182960.a.a.b.e.a	ENSGT00940000157099	ENSGT00950000182898.a.b	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000018426	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000004383 #16	ENSGT00390000000022.b.a.a #15	ENSGT00390000002918.a.b #14	ENSGT00940000155955.C.i.a	ENSGT00940000176980	ENSGT00530000063509.A.g	ENSGT00950000183040.B
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	27	ENSGT00940000158690	ENSGT00510000048032	ENSGT00950000183157.a.a.b.c	ENSGT00950000182960.a.a.b.e.a	ENSGT00940000157099	ENSGT00950000182898.a.b	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000018426	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000004383 #16	ENSGT00390000000022.b.a.a #15	ENSGT00390000002918.a.b #14	ENSGT00940000155955.C.i.a	ENSGT00940000176980	ENSGT00530000063509.A.g	ENSGT00950000183040.B
Haplochromini	ANCESTRAL SPECIES	32												ENSGT00390000018426	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000004383 #16	ENSGT00390000000022.b.a.a #15	ENSGT00390000002918.a.b #14	ENSGT00940000155955.C.i.a	ENSGT00940000176980	ENSGT00530000063509.A.g.b	ENSGT00530000063509.A.g.a
Burton s mouthbrooder	MODERN SPECIES	789												znhit1 (ENSHBUG00000017745)	TOB2 (ENSHBUG00000017701) #19	TEF (ENSHBUG00000017679) #20	zc3h7ba (ENSHBUG00000017656) #21	rangap1a (ENSHBUG00000017619) #22	ENSHBUG00000017537	rbx1 (ENSHBUG00000017477) #26	st13 (ENSHBUG00000017520) #29	xpnpep3 (ENSHBUG00000017468) #27	EP300 (ENSHBUG00000017431) #25	cbx7a (ENSHBUG00000017362)	TOP3A (ENSHBUG00000017352)	smcr8a (ENSHBUG00000017300)	polr3h (ENSHBUG00000017295) #16	CSDC2 (ENSHBUG00000017249) #15	PMM1 (ENSHBUG00000017236) #14	ENSHBUG00000017132	ENSHBUG00000015460	plbd1a (ENSHBUG00000015433)	pick1 (ENSHBUG00000015307)
Haplochromini_A	ANCESTRAL SPECIES	34						ENSGT00940000155366.b.b.d.b	ENSGT00940000159976	ENSGT01100000263515.a.b.b	ENSGT00940000158458	ENSGT00510000048339	ENSGT00390000006233.c.a.a	ENSGT00390000018426	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000004383 #16	ENSGT00390000000022.b.a.a #15	ENSGT00390000002918.a.b #14	ENSGT00940000155955.C.i.a	ENSGT00940000176980	ENSGT00530000063509.A.g.b	ENSGT00530000063509.A.g.a
P. nyererei	MODERN SPECIES	644						si:ch211-157c3.4 (ENSPNYG00000024086)	SLC2A6 (ENSPNYG00000024082)	ENSPNYG00000024079	clcn7 (ENSPNYG00000024077)	rpusd1 (ENSPNYG00000024076)	arhgdig (ENSPNYG00000024075)	znhit1 (ENSPNYG00000024072)	TOB2 (ENSPNYG00000024071) #19	tefb (ENSPNYG00000024069) #20	zc3h7ba (ENSPNYG00000024065) #21	rangap1a (ENSPNYG00000024061) #22	ENSPNYG00000024060	rbx1 (ENSPNYG00000024059) #26	st13 (ENSPNYG00000024058) #29	xpnpep3 (ENSPNYG00000024056) #27	EP300 (ENSPNYG00000024055) #25	ENSPNYG00000024051	TOP3A (ENSPNYG00000024044)	smcr8a (ENSPNYG00000024041)	polr3h (ENSPNYG00000024040) #16	CSDC2 (ENSPNYG00000024039) #15	PMM1 (ENSPNYG00000024037) #14	ENSPNYG00000024028	pick1 (ENSPNYG00000024022)	ENSPNYG00000024020	ENSPNYG00000024018
Haplochromini_B	ANCESTRAL SPECIES	31						ENSGT00940000155366.b.b.d.b	ENSGT00940000159976	ENSGT01100000263515.a.b.b	ENSGT00940000158458	ENSGT00510000048339	ENSGT00390000006233.c.a.a	ENSGT00390000018426	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000004383 #16	ENSGT00390000000022.b.a.a #15	ENSGT00390000002918.a.b #14	ENSGT00940000164472.a.b.a.b.a.a.a.b.b.a.b	ENSGT00940000155955.C.i.a	ENSGT00940000176980	ENSGT00530000063509.A.g.b
Zebra mbuna	MODERN SPECIES	53					ENSMZEG00005021923	si:ch211-157c3.4 (ENSMZEG00005021925)	SLC2A6 (ENSMZEG00005021928)	ENSMZEG00005021930	clcn7 (ENSMZEG00005021934)	rpusd1 (ENSMZEG00005003214)	arhgdig (ENSMZEG00005003227)	znhit1 (ENSMZEG00005003278)	TOB2 (ENSMZEG00005003307) #19	TEF (ENSMZEG00005003328) #20	ZC3H7B (ENSMZEG00005003357) #21	rangap1a (ENSMZEG00005003391) #22	ENSMZEG00005003455	rbx1 (ENSMZEG00005003464) #26	st13 (ENSMZEG00005003475) #29	xpnpep3 (ENSMZEG00005003502) #27	EP300 (ENSMZEG00005003546) #25	cbx7a (ENSMZEG00005003654)	TOP3A (ENSMZEG00005003668)	smcr8a (ENSMZEG00005003744)	polr3h (ENSMZEG00005003756) #16	CSDC2 (ENSMZEG00005003780) #15	PMM1 (ENSMZEG00005003818) #14	ENSMZEG00005003837	ENSMZEG00005003852	ENSMZEG00005003858
Eastern happy	MODERN SPECIES	16	ENSACLG00000012603	ENSACLG00000012627	ENSACLG00000013178	ENSACLG00000013181	ENSACLG00000013537	si:ch211-157c3.4 (ENSACLG00000013602)	SLC2A6 (ENSACLG00000013616)	ENSACLG00000013623	clcn7 (ENSACLG00000013637)	rpusd1 (ENSACLG00000013692)	arhgdig (ENSACLG00000013708)	znhit1 (ENSACLG00000013738)	TOB2 (ENSACLG00000013836) #19	TEF (ENSACLG00000013850) #20	ZC3H7B (ENSACLG00000013897) #21	rangap1a (ENSACLG00000013966) #22	ENSACLG00000014070	rbx1 (ENSACLG00000014188) #26	st13 (ENSACLG00000014094) #29	xpnpep3 (ENSACLG00000014201) #27	EP300 (ENSACLG00000014268) #25	cbx7a (ENSACLG00000014466)	TOP3A (ENSACLG00000014486)	smcr8a (ENSACLG00000014639)	polr3h (ENSACLG00000014650) #16	CSDC2 (ENSACLG00000014697) #15	PMM1 (ENSACLG00000014718) #14	ENSACLG00000014751	ENSACLG00000014802	ENSACLG00000014890	ENSACLG00000015406
Lyretail cichlid	MODERN SPECIES	344	efcab1 (ENSNBRG00000004841)	smurf1 (ENSNBRG00000004768)	RNF216 (ENSNBRG00000004728)	FSCN1 (ENSNBRG00000004704)	ENSNBRG00000004668	TNRC18 (ENSNBRG00000004122)	slc29a4a (ENSNBRG00000003983)	atp5mf (ENSNBRG00000003971)	cpsf4 (ENSNBRG00000003943)	shmt1 (ENSNBRG00000003899)	pdap1b (ENSNBRG00000003870)	bud31 (ENSNBRG00000003852)	TOB2 (ENSNBRG00000003831) #19	TEF (ENSNBRG00000003823) #20	ZC3H7B (ENSNBRG00000003771) #21	RANGAP1 (ENSNBRG00000003657) #22	rbx1 (ENSNBRG00000003645) #26	ENSNBRG00000003619	xpnpep3 (ENSNBRG00000003563) #27	EP300 (ENSNBRG00000003468) #25	ENSNBRG00000003439	TOP3A (ENSNBRG00000003374)	smcr8a (ENSNBRG00000003315)	polr3h (ENSNBRG00000003286) #16	CSDC2 (ENSNBRG00000003278) #15	PMM1 (ENSNBRG00000003243) #14	ENSNBRG00000003164	ENSNBRG00000003143	plbd1a (ENSNBRG00000003100)	pick1 (ENSNBRG00000002990)	ENSNBRG00000002931
Nile tilapia	MODERN SPECIES	16	PLEKHF1 (ENSONIG00000037126)	bglap (ENSONIG00000040259)	mgp (ENSONIG00000008335)	ENSONIG00000034642	GPRC5D (ENSONIG00000008340)	ENSONIG00000008341	ENSONIG00000043098	znhit1 (ENSONIG00000008345)	ENSONIG00000041464	ENSONIG00000037343	ENSONIG00000042213	znhit1 (ENSONIG00000008482)	TOB2 (ENSONIG00000042773) #19	tefb (ENSONIG00000029352) #20	ZC3H7B (ENSONIG00000008474) #21	rangap1a (ENSONIG00000008468) #22	ENSONIG00000008467	rbx1 (ENSONIG00000008464) #26	st13 (ENSONIG00000008461) #29	xpnpep3 (ENSONIG00000008459) #27	EP300 (ENSONIG00000008451) #25	ENSONIG00000040777	TOP3A (ENSONIG00000008448)	smcr8a (ENSONIG00000008447)	polr3h (ENSONIG00000008444) #16	CSDC2 (ENSONIG00000008441) #15	PMM1 (ENSONIG00000008439) #14	GUCY2C (ENSONIG00000008430)	ENSONIG00000030979	plbd1a (ENSONIG00000008429)	ENSONIG00000035120
Midas cichlid	MODERN SPECIES	413	smurf1 (ENSACIG00000008901)	RNF216 (ENSACIG00000008944)	FSCN1 (ENSACIG00000008970)	ENSACIG00000008980	TNRC18 (ENSACIG00000008998)	slc29a4a (ENSACIG00000009092)	atp5mf (ENSACIG00000009170)	cpsf4 (ENSACIG00000009248)	shmt1 (ENSACIG00000009271)	pdap1b (ENSACIG00000009293)	bud31 (ENSACIG00000009314)	ENSACIG00000009326	TOB2 (ENSACIG00000009336) #19	tefb (ENSACIG00000009347) #20	ZC3H7B (ENSACIG00000009388) #21	rangap1a (ENSACIG00000009654) #22	ENSACIG00000009692	rbx1 (ENSACIG00000009731) #26	st13 (ENSACIG00000009746) #29	xpnpep3 (ENSACIG00000009775) #27	ENSACIG00000009828 #25	ENSACIG00000010051	TOP3A (ENSACIG00000010065)	smcr8a (ENSACIG00000010097)	polr3h (ENSACIG00000010128) #16	CSDC2 (ENSACIG00000010150) #15	PMM1 (ENSACIG00000010162) #14	ENSACIG00000010263	ENSACIG00000010496	plbd1a (ENSACIG00000010511)	pick1 (ENSACIG00000010589)
Percomorphaceae_C	ANCESTRAL SPECIES		ENSGT00940000163472.e.a	ENSGT00940000154393.t	ENSGT00940000163472.f	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT00940000176980	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099
Eupercaria	ANCESTRAL SPECIES	3	ENSGT00940000163472.e.a	ENSGT00940000154393.t	ENSGT00940000163472.f	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT00940000176980	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099
Tetraodontidae	ANCESTRAL SPECIES	41	ENSGT00940000157763	ENSGT00940000160068.a.a	ENSGT00940000154393.t	ENSGT00940000163472.f	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT00940000176980	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099
Fugu	DUPLICATION
Fugu	MODERN SPECIES	74	ENSTRUG00000026886	pick1 (ENSTRUG00000031305)	PLBD1 (ENSTRUG00000026607)	ENSTRUG00000028329	ENSTRUG00000004638	PMM1 (ENSTRUG00000004293) #14	CSDC2 (ENSTRUG00000028308) #15	polr3h (ENSTRUG00000027338) #16	TOB2 (ENSTRUG00000032879) #19	tefb (ENSTRUG00000032627) #20	CSDC2 (ENSTRUG00000017020) #15	polr3h (ENSTRUG00000031152) #16	TOB2 (ENSTRUG00000027097) #19	tefb (ENSTRUG00000029349) #20	ZC3H7B (ENSTRUG00000002273) #21	RANGAP1 (ENSTRUG00000029849) #22	ENSTRUG00000026350	rbx1 (ENSTRUG00000027684) #26	st13 (ENSTRUG00000033230) #29	xpnpep3 (ENSTRUG00000031649) #27	EP300 (ENSTRUG00000032026) #25	cbx7a (ENSTRUG00000032741)	TOP3A (ENSTRUG00000029432)	bud31 (ENSTRUG00000026127)
Fugu	MODERN SPECIES	17	ENSTRUG00000020232	GGA1 (ENSTRUG00000009076)	ENSTRUG00000009294	TMEM184B (ENSTRUG00000027470)	TMEM184B (ENSTRUG00000009770)	CSNK1E (ENSTRUG00000010037)	ENSTRUG00000010177 #35	ENSTRUG00000028898	ENSTRUG00000010446	ENSTRUG00000010699	ENSTRUG00000031877	ENSTRUG00000029788	ENSTRUG00000004505	pick1 (ENSTRUG00000005715)	plbd1a (ENSTRUG00000005509)	rangap1a (ENSTRUG00000008041) #22	ENSTRUG00000007863	rbx1 (ENSTRUG00000007816) #26	st13 (ENSTRUG00000007578) #29	xpnpep3 (ENSTRUG00000007415) #27	EP300 (ENSTRUG00000006616) #25	cbx7a (ENSTRUG00000023605)	TOP3A (ENSTRUG00000006332)	smcr8a (ENSTRUG00000006263)	bud31 (ENSTRUG00000023390)	pdap1b (ENSTRUG00000024967)	shmt1 (ENSTRUG00000003948)	cpsf4 (ENSTRUG00000030405)	atp5mf (ENSTRUG00000003441)	slc29a4a (ENSTRUG00000005833)	TNRC18 (ENSTRUG00000005638)
Tetraodon	MODERN SPECIES	26	ENSTNIG00000010849	emp1 (ENSTNIG00000010850)	BCL2L1 (ENSTNIG00000010851)	ENSTNIG00000004814	ENSTNIG00000002776	aoc2 (ENSTNIG00000004813)	kcnc3a (ENSTNIG00000003610)	ENSTNIG00000004208	ENSTNIG00000004209	ENSTNIG00000004210	ENSTNIG00000004046	ENSTNIG00000004047	ENSTNIG00000019519	ENSTNIG00000004326	ENSTNIG00000004418 #21	rangap1a (ENSTNIG00000005099) #22	ENSTNIG00000005098	rbx1 (ENSTNIG00000005097) #26	st13 (ENSTNIG00000005096) #29	xpnpep3 (ENSTNIG00000005095) #27	EP300 (ENSTNIG00000005094) #25	cbx7a (ENSTNIG00000006270)	TOP3A (ENSTNIG00000006269)	smcr8a (ENSTNIG00000006268)	bud31 (ENSTNIG00000006267)	shmt1 (ENSTNIG00000006266)	cpsf4 (ENSTNIG00000006265)	atp5mf (ENSTNIG00000003693)	atp5mf (ENSTNIG00000006264)	slc29a4a (ENSTNIG00000003694)	ENSTNIG00000003695
Eupecaria_A	ANCESTRAL SPECIES	5	ENSGT00940000160068.a.a	ENSGT00940000163472.e.a	ENSGT00940000154393.t	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT00940000176980	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099
Ballan wrasse	MODERN SPECIES	2822																rangap1a (ENSLBEG00000017402) #22
Eupecaria_B	ANCESTRAL SPECIES		ENSGT00940000160068.a.a	ENSGT00940000163472.e.a	ENSGT00940000154393.t	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT00940000176980	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099
Perciformes	ANCESTRAL SPECIES	1	ENSGT00940000160068.a.a	ENSGT00940000163472.e.a	ENSGT00940000154393.t	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT00940000176980	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099.d
Perciformes_a	ANCESTRAL SPECIES	1	ENSGT00940000160068.a.a	ENSGT00940000163472.e.a	ENSGT00940000154393.t	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT00940000176980	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099.d
Pike perch	MODERN SPECIES	38	ENSSLUG00000023308	ENSSLUG00000023324	ENSSLUG00000023327	ENSSLUG00000023328	pick1 (ENSSLUG00000023337)	plbd1a (ENSSLUG00000023367)	ENSSLUG00000023423	ENSSLUG00000023439	PMM1 (ENSSLUG00000023500) #14	CSDC2 (ENSSLUG00000023511) #15	polr3h (ENSSLUG00000023519) #16	aco2 (ENSSLUG00000023545) #17	TOB2 (ENSSLUG00000023597) #19	tefb (ENSSLUG00000023601) #20	zc3h7ba (ENSSLUG00000023610) #21	rangap1a (ENSSLUG00000001614) #22	ENSSLUG00000001677	rbx1 (ENSSLUG00000001701) #26	st13 (ENSSLUG00000001707) #29	xpnpep3 (ENSSLUG00000001728) #27	EP300 (ENSSLUG00000001890) #25	cbx7a (ENSSLUG00000002361)	TOP3A (ENSSLUG00000002501)	smcr8a (ENSSLUG00000004379)	bud31 (ENSSLUG00000004387)	pdap1b (ENSSLUG00000004402)	shmt1 (ENSSLUG00000004456)	cpsf4 (ENSSLUG00000004689)	atp5mf (ENSSLUG00000004711)	slc29a4a (ENSSLUG00000004736)	ENSSLUG00000004760
Channel bull blenny	MODERN SPECIES	22	ENSCGOG00000010312	ENSCGOG00000010310	ENSCGOG00000010305	ENSCGOG00000010301	pick1 (ENSCGOG00000010274)	plbd1a (ENSCGOG00000010227)	ENSCGOG00000010226	ENSCGOG00000010220	PMM1 (ENSCGOG00000010161) #14	CSDC2 (ENSCGOG00000010156) #15	polr3h (ENSCGOG00000010152) #16	aco2 (ENSCGOG00000009031) #17	TOB2 (ENSCGOG00000009000) #19	tefb (ENSCGOG00000008996) #20	zc3h7ba (ENSCGOG00000008974) #21	rangap1a (ENSCGOG00000008714) #22	ENSCGOG00000008708	rbx1 (ENSCGOG00000008684) #26	st13 (ENSCGOG00000008674) #29	xpnpep3 (ENSCGOG00000008535) #27	EP300 (ENSCGOG00000007191) #25	ENSCGOG00000007162	TOP3A (ENSCGOG00000006110)	smcr8a (ENSCGOG00000006070)	bud31 (ENSCGOG00000006063)	pdap1b (ENSCGOG00000006059)	shmt1 (ENSCGOG00000004877)	atp5mf (ENSCGOG00000004791)	cpsf4 (ENSCGOG00000004795)	slc29a4a (ENSCGOG00000004740)	ENSCGOG00000004726
Cottioidei	ANCESTRAL SPECIES	1	ENSGT00940000157763	ENSGT00940000160068.a.a	ENSGT00940000163472.e.a	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT00940000176980	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099.d
Lumpfish	MODERN SPECIES	23	ENSCLMG00005021888 #35	ENSCLMG00005021889	ENSCLMG00005021890	ENSCLMG00005021891	pick1 (ENSCLMG00005021892)	plbd1a (ENSCLMG00005021893)	ENSCLMG00005021910	GUCY2C (ENSCLMG00005021913)	PMM1 (ENSCLMG00005021926) #14	CSDC2 (ENSCLMG00005021928) #15	polr3h (ENSCLMG00005004239) #16	ACO2 (ENSCLMG00005004361) #17	TOB2 (ENSCLMG00005005101) #19	tefb (ENSCLMG00005005102) #20	zc3h7ba (ENSCLMG00005005104) #21	rangap1a (ENSCLMG00005005106) #22	ENSCLMG00005005112	rbx1 (ENSCLMG00005005119) #26	st13 (ENSCLMG00005005126) #29	xpnpep3 (ENSCLMG00005005139) #27	ENSCLMG00005005172 #25	cbx7a (ENSCLMG00005005188)	TOP3A (ENSCLMG00005005202)	smcr8a (ENSCLMG00005006880)	bud31 (ENSCLMG00005006882)	pdap1b (ENSCLMG00005006885)	shmt1 (ENSCLMG00005006932)	cpsf4 (ENSCLMG00005010356)	atp5mf (ENSCLMG00005010357)	slc29a4a (ENSCLMG00005010359)	ENSCLMG00005010361
Stickleback	MODERN SPECIES	10	ENSGACG00000007447	ENSGACG00000007449	ENSGACG00000007451	ENSGACG00000007454	pick1 (ENSGACG00000007457)	plbd1a (ENSGACG00000007477)	ENSGACG00000007511	ENSGACG00000007516	PMM1 (ENSGACG00000007533) #14	CSDC2 (ENSGACG00000007540) #15	polr3h (ENSGACG00000007549) #16	aco2 (ENSGACG00000007567) #17	TOB2 (ENSGACG00000007621) #19	tefb (ENSGACG00000007628) #20	zc3h7ba (ENSGACG00000007633) #21	rangap1a (ENSGACG00000007645) #22	ENSGACG00000007654	rbx1 (ENSGACG00000007657) #26	st13 (ENSGACG00000007663) #29	xpnpep3 (ENSGACG00000007684) #27	EP300 (ENSGACG00000007707) #25	cbx7a (ENSGACG00000007724)	TOP3A (ENSGACG00000007735)	smcr8a (ENSGACG00000007755)	bud31 (ENSGACG00000007759)	shmt1 (ENSGACG00000007764)	cpsf4 (ENSGACG00000007792)	atp5mf (ENSGACG00000007796)	slc29a4a (ENSGACG00000007807)	ENSGACG00000007811	ENSGACG00000007822
Eupecaria_C	ANCESTRAL SPECIES	17	ENSGT00940000157763	ENSGT00940000160068.a.a	ENSGT00940000163472.e.a	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT00940000176980	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099
Gilthead seabream	MODERN SPECIES	15	ENSSAUG00010009080	ENSSAUG00010009081	ENSSAUG00010009087	ENSSAUG00010009088	ENSSAUG00010009089	pick1 (ENSSAUG00010009110)	plbd1a (ENSSAUG00010009226)	ENSSAUG00010009517	ENSSAUG00010009544	PMM1 (ENSSAUG00010011553) #14	CSDC2 (ENSSAUG00010011558) #15	polr3h (ENSSAUG00010011560) #16	aco2 (ENSSAUG00010011604) #17	TOB2 (ENSSAUG00010013477) #19	tefb (ENSSAUG00010013479) #20	rangap1a (ENSSAUG00010013484) #22	ZC3H7B (ENSSAUG00010013487) #21	ENSSAUG00010013488	rbx1 (ENSSAUG00010013490) #26	st13 (ENSSAUG00010013492) #29	xpnpep3 (ENSSAUG00010013589) #27	EP300 (ENSSAUG00010013614) #25	cbx7a (ENSSAUG00010015081)	TOP3A (ENSSAUG00010015097)	smcr8a (ENSSAUG00010015206)	bud31 (ENSSAUG00010015207)	pdap1b (ENSSAUG00010015210)	shmt1 (ENSSAUG00010015227)	cpsf4 (ENSSAUG00010015402)	atp5mf (ENSSAUG00010015404)	slc29a4a (ENSSAUG00010015410)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	35			ENSGT00940000163472.e.a	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT00940000176980	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099
European seabass	MODERN SPECIES	21	rab3db (ENSDLAG00005009641)	epor (ENSDLAG00005009604)	ENSDLAG00005009599	ENSDLAG00005009593	ENSDLAG00005009560	ENSDLAG00005009465	ENSDLAG00005009333	ENSDLAG00005009322	ENSDLAG00005009048	ENSDLAG00005009014 #14	ENSDLAG00005031848 #16	ACO2 (ENSDLAG00005008667) #17	TOB2 (ENSDLAG00005031270) #19	TEF (ENSDLAG00005034315) #20	ZC3H7B (ENSDLAG00005008571) #21	RANGAP1 (ENSDLAG00005008464) #22	ENSDLAG00005008437	st13 (ENSDLAG00005008416) #29	xpnpep3 (ENSDLAG00005031557) #27	EP300 (ENSDLAG00005008265) #25	cbx7a (ENSDLAG00005008257)	ENSDLAG00005008007	ENSDLAG00005007986	ENSDLAG00005007959	ENSDLAG00005007543	cpsf4 (ENSDLAG00005030914)	ENSDLAG00005007485	slc29a4a (ENSDLAG00005007426)	TNRC18 (ENSDLAG00005007088)	ENSDLAG00005028561	FSCN1 (ENSDLAG00005007046)
Large yellow croaker	MODERN SPECIES	483	ENSLCRG00005015436	ENSLCRG00005015433	ENSLCRG00005015430	pick1 (ENSLCRG00005015420)	plbd1a (ENSLCRG00005015401)	ENSLCRG00005015397	GUCY2C (ENSLCRG00005014044)	PMM1 (ENSLCRG00005014028) #14	ENSLCRG00005014026	CSDC2 (ENSLCRG00005014024) #15	polr3h (ENSLCRG00005014018) #16	aco2 (ENSLCRG00005012380) #17	TOB2 (ENSLCRG00005012366) #19	tefb (ENSLCRG00005012365) #20	zc3h7ba (ENSLCRG00005012324) #21	rangap1a (ENSLCRG00005012231) #22	ENSLCRG00005012225	rbx1 (ENSLCRG00005012224) #26	st13 (ENSLCRG00005012219) #29	xpnpep3 (ENSLCRG00005012027) #27	EP300 (ENSLCRG00005011793) #25	cbx7a (ENSLCRG00005011778)	TOP3A (ENSLCRG00005011370)	smcr8a (ENSLCRG00005011345)	bud31 (ENSLCRG00005011339)	pdap1b (ENSLCRG00005011336)	shmt1 (ENSLCRG00005009735)	cpsf4 (ENSLCRG00005009728)	atp5mf (ENSLCRG00005009727)	slc29a4a (ENSLCRG00005009699)	TNRC18 (ENSLCRG00005009693)
Percomorphaceae_D	ANCESTRAL SPECIES	1	ENSGT00940000160068.a.a	ENSGT00940000155025.A	ENSGT00940000154393.t	ENSGT00940000163472.e.a	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT00940000176980	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099
Anabantaria	ANCESTRAL SPECIES	6	ENSGT00940000160068.a.a	ENSGT00940000154393.s.a	ENSGT00940000163472.e.a	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT00940000176980	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099
Anabantoidei	ANCESTRAL SPECIES	7	ENSGT00940000160068.a.a	ENSGT00940000154393.s.a	ENSGT00940000163472.e.a.o	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT00940000176980	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099
Siamese fighting fish	DUPLICATION
Siamese fighting fish	MODERN SPECIES	19	ENSBSLG00000016337 #35	ENSBSLG00000016352	CDC42EP1 (ENSBSLG00000016356)	ENSBSLG00000016359	ENSBSLG00000016362	ENSBSLG00000016363	pick1 (ENSBSLG00000016370)	plbd1a (ENSBSLG00000016449)	ENSBSLG00000016478	PMM1 (ENSBSLG00000016484) #14	CSDC2 (ENSBSLG00000016498) #15	polr3h (ENSBSLG00000016505) #16	aco2 (ENSBSLG00000016536) #17	tefb (ENSBSLG00000016565) #20	zc3h7ba (ENSBSLG00000016691) #21	rangap1a (ENSBSLG00000016779) #22	ENSBSLG00000016919	ENSBSLG00000017016 #26	ENSBSLG00000017045	ENSBSLG00000017063	pick1 (ENSBSLG00000017098)	PMM1 (ENSBSLG00000017276) #14	aco2 (ENSBSLG00000017434) #17	TOB2 (ENSBSLG00000018137) #19	tefb (ENSBSLG00000018141) #20	zc3h7ba (ENSBSLG00000018253) #21	RANGAP1 (ENSBSLG00000018334) #22	ENSBSLG00000018480	rbx1 (ENSBSLG00000018549) #26	st13 (ENSBSLG00000018560) #29	xpnpep3 (ENSBSLG00000018571) #27
Siamese fighting fish	MODERN SPECIES	19	polr3h (ENSBSLG00000016505) #16	aco2 (ENSBSLG00000016536) #17	tefb (ENSBSLG00000016565) #20	zc3h7ba (ENSBSLG00000016691) #21	rangap1a (ENSBSLG00000016779) #22	ENSBSLG00000016919	ENSBSLG00000017016 #26	ENSBSLG00000017045	ENSBSLG00000017063	pick1 (ENSBSLG00000017098)	PMM1 (ENSBSLG00000017276) #14	aco2 (ENSBSLG00000017434) #17	TOB2 (ENSBSLG00000018137) #19	tefb (ENSBSLG00000018141) #20	zc3h7ba (ENSBSLG00000018253) #21	RANGAP1 (ENSBSLG00000018334) #22	ENSBSLG00000018480	rbx1 (ENSBSLG00000018549) #26	st13 (ENSBSLG00000018560) #29	xpnpep3 (ENSBSLG00000018571) #27	EP300 (ENSBSLG00000018845) #25	ENSBSLG00000019668	TOP3A (ENSBSLG00000019675)	smcr8a (ENSBSLG00000019940)	bud31 (ENSBSLG00000019947)	pdap1b (ENSBSLG00000019956)	shmt1 (ENSBSLG00000020011)	cpsf4 (ENSBSLG00000020471)	atp5mf (ENSBSLG00000020484)	slc29a4a (ENSBSLG00000020485)	TNRC18 (ENSBSLG00000021039)
Climbing perch	MODERN SPECIES	21	ENSATEG00000008547	ENSATEG00000008538	ENSATEG00000008516	LGALS2 (ENSATEG00000029897)	pick1 (ENSATEG00000008500)	plbd1a (ENSATEG00000008452)	ENSATEG00000027364	ENSATEG00000008176	ENSATEG00000008128 #14	CSDC2 (ENSATEG00000008111) #15	polr3h (ENSATEG00000028415) #16	ACO2 (ENSATEG00000008001) #17	TOB2 (ENSATEG00000028658) #19	tefb (ENSATEG00000027353) #20	ZC3H7B (ENSATEG00000007908) #21	RANGAP1 (ENSATEG00000007709) #22	ENSATEG00000007562	rbx1 (ENSATEG00000007548) #26	st13 (ENSATEG00000007540) #29	xpnpep3 (ENSATEG00000007507) #27	ENSATEG00000007245 #25	cbx7a (ENSATEG00000028506)	ENSATEG00000007160	ENSATEG00000007153	bud31 (ENSATEG00000007134)	ENSATEG00000007106	shmt1 (ENSATEG00000007061)	cpsf4 (ENSATEG00000006994)	ENSATEG00000028258	slc29a4a (ENSATEG00000006954)	ENSATEG00000006938
Zig-zag eel	MODERN SPECIES	22	ENSMAMG00000007683	ENSMAMG00000027425	ENSMAMG00000007662	ENSMAMG00000007644	pick1 (ENSMAMG00000007626)	plbd1a (ENSMAMG00000007592)	ENSMAMG00000007574	ENSMAMG00000007517	ENSMAMG00000007476 #14	CSDC2 (ENSMAMG00000007459) #15	polr3h (ENSMAMG00000007445) #16	ACO2 (ENSMAMG00000007378) #17	TOB2 (ENSMAMG00000026760) #19	tefb (ENSMAMG00000007334) #20	ZC3H7B (ENSMAMG00000007320) #21	RANGAP1 (ENSMAMG00000007279) #22	ENSMAMG00000007220	rbx1 (ENSMAMG00000006789) #26	st13 (ENSMAMG00000006767) #29	xpnpep3 (ENSMAMG00000006750) #27	ENSMAMG00000006706	ENSMAMG00000006590 #25	cbx7a (ENSMAMG00000006424)	ENSMAMG00000006374	ENSMAMG00000006366	bud31 (ENSMAMG00000006354)	ENSMAMG00000006324	shmt1 (ENSMAMG00000006285)	cpsf4 (ENSMAMG00000006244)	ENSMAMG00000006221	slc29a4a (ENSMAMG00000006177)
Carangaria	ANCESTRAL SPECIES	4	ENSGT00940000157763	ENSGT00940000160068.a.a	ENSGT00940000163472.e.a	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT00940000176980	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099
Pleuronectoidei	ANCESTRAL SPECIES	2	ENSGT00940000155813.i.a #35	ENSGT00940000157763	ENSGT00940000160068.a.a	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT00940000176980	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099
Turbot	MODERN SPECIES	10	ENSSMAG00000029917 #35	ENSSMAG00000005562 #35	ENSSMAG00000005621	ENSSMAG00000005629	pick1 (ENSSMAG00000005640)	plbd1a (ENSSMAG00000005659)	ENSSMAG00000005738	ENSSMAG00000005680	ENSSMAG00000005742 #14	ENSSMAG00000005770 #15	ENSSMAG00000005784 #16	ACO2 (ENSSMAG00000005805) #17	TOB2 (ENSSMAG00000005849) #19	tefb (ENSSMAG00000037308) #20	ZC3H7B (ENSSMAG00000005891) #21	RANGAP1 (ENSSMAG00000005903) #22	ENSSMAG00000005932	rbx1 (ENSSMAG00000005989) #26	st13 (ENSSMAG00000006090) #29	xpnpep3 (ENSSMAG00000006101) #27	ENSSMAG00000006120 #25	cbx7a (ENSSMAG00000006170)	ENSSMAG00000006179	ENSSMAG00000006220	bud31 (ENSSMAG00000034362)	ENSSMAG00000006267	shmt1 (ENSSMAG00000006361)	cpsf4 (ENSSMAG00000006374)	ENSSMAG00000006396	slc29a4a (ENSSMAG00000006475)	ACTB (ENSSMAG00000006565)
Tongue sole	MODERN SPECIES	8	sox10 (ENSCSEG00000006834)	kdelr3 (ENSCSEG00000006829)	ENSCSEG00000006826	ENSCSEG00000006803	pick1 (ENSCSEG00000006794)	plbd1a (ENSCSEG00000006785)	ENSCSEG00000006778	ENSCSEG00000006760	PMM1 (ENSCSEG00000006747) #14	CSDC2 (ENSCSEG00000006732) #15	polr3h (ENSCSEG00000006721) #16	aco2 (ENSCSEG00000006701) #17	TOB2 (ENSCSEG00000006692) #19	tefb (ENSCSEG00000006684) #20	ZC3H7B (ENSCSEG00000006655) #21	rangap1a (ENSCSEG00000006638) #22	ENSCSEG00000006625	rbx1 (ENSCSEG00000006574) #26	st13 (ENSCSEG00000006561) #29	xpnpep3 (ENSCSEG00000006554) #27	EP300 (ENSCSEG00000006412) #25	cbx7a (ENSCSEG00000006383)	TOP3A (ENSCSEG00000006356)	bud31 (ENSCSEG00000006343)	smcr8a (ENSCSEG00000006341)	pdap1b (ENSCSEG00000006316)	shmt1 (ENSCSEG00000006309)	ENSCSEG00000006306	tmem150b (ENSCSEG00000006300)	adsl (ENSCSEG00000006283) #34	ENSCSEG00000006276
Carangaria_A	ANCESTRAL SPECIES	12	ENSGT00940000157763	ENSGT00940000160068.a.a	ENSGT00940000163472.e.a	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT00940000176980	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099
Seriola	ANCESTRAL SPECIES	23	ENSGT00940000163472.e.a.n	ENSGT00940000154393.t	ENSGT00940000163472.e.a.m	ENSGT00940000155025.A	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT00940000176980	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099
Yellowtail amberjack	MODERN SPECIES	3280							CSDC2 (ENSSLDG00000018197) #15	polr3h (ENSSLDG00000018207) #16	aco2 (ENSSLDG00000018236) #17	TOB2 (ENSSLDG00000018271) #19	tefb (ENSSLDG00000018292) #20	ZC3H7B (ENSSLDG00000018333) #21	ENSSLDG00000018441	ENSSLDG00000018450	ENSSLDG00000018457	rangap1a (ENSSLDG00000018507) #22	ENSSLDG00000018769	rbx1 (ENSSLDG00000018791) #26	st13 (ENSSLDG00000018807) #29	xpnpep3 (ENSSLDG00000018834) #27	EP300 (ENSSLDG00000018909) #25	cbx7a (ENSSLDG00000018956)	TOP3A (ENSSLDG00000018973)	smcr8a (ENSSLDG00000019009)	bud31 (ENSSLDG00000019020)	pdap1b (ENSSLDG00000019036)	shmt1 (ENSSLDG00000019048)	cpsf4 (ENSSLDG00000019078)	atp5mf (ENSSLDG00000019105)	slc29a4a (ENSSLDG00000019119)	TNRC18 (ENSSLDG00000019179)
Greater amberjack	MODERN SPECIES	90													ENSSDUG00000000265	ENSSDUG00000000254	ENSSDUG00000000234	rangap1a (ENSSDUG00000000140) #22	ENSSDUG00000000118	rbx1 (ENSSDUG00000000109) #26	st13 (ENSSDUG00000000080) #29	xpnpep3 (ENSSDUG00000019212) #27	EP300 (ENSSDUG00000019084) #25	cbx7a (ENSSDUG00000019053)	TOP3A (ENSSDUG00000018992)	smcr8a (ENSSDUG00000018983)	bud31 (ENSSDUG00000018971)	pdap1b (ENSSDUG00000018958)	shmt1 (ENSSDUG00000018925)	cpsf4 (ENSSDUG00000018887)	atp5mf (ENSSDUG00000018902)	slc29a4a (ENSSDUG00000018852)	TNRC18 (ENSSDUG00000018737)
Barramundi perch	MODERN SPECIES	147	ENSLCAG00010012133	ENSLCAG00010012105	ENSLCAG00010012101	ENSLCAG00010012096	pick1 (ENSLCAG00010012071)	plbd1a (ENSLCAG00010012052)	ENSLCAG00010012047	ENSLCAG00010011935	PMM1 (ENSLCAG00010011890) #14	CSDC2 (ENSLCAG00010011882) #15	polr3h (ENSLCAG00010011871) #16	aco2 (ENSLCAG00010011221) #17	TOB2 (ENSLCAG00010011105) #19	tefb (ENSLCAG00010011099) #20	ZC3H7B (ENSLCAG00010011084) #21	rangap1a (ENSLCAG00010011078) #22	ENSLCAG00010011070	rbx1 (ENSLCAG00010011043) #26	st13 (ENSLCAG00010011035) #29	xpnpep3 (ENSLCAG00010011016) #27	EP300 (ENSLCAG00010010925) #25	cbx7a (ENSLCAG00010010903)	TOP3A (ENSLCAG00010010786)	smcr8a (ENSLCAG00010010747)	bud31 (ENSLCAG00010010738)	pdap1b (ENSLCAG00010010730)	shmt1 (ENSLCAG00010010699)	cpsf4 (ENSLCAG00010010683)	atp5mf (ENSLCAG00010010678)	slc29a4a (ENSLCAG00010010671)	TNRC18 (ENSLCAG00010010662)
Pinecone sodierfish	MODERN SPECIES	22	ENSMMDG00005000311	ENSMMDG00005000315	ENSMMDG00005000325	ENSMMDG00005000344	pick1 (ENSMMDG00005000385)	plbd1a (ENSMMDG00005000445)	ENSMMDG00005000537	GUCY2C (ENSMMDG00005000564)	PMM1 (ENSMMDG00005000608) #14	CSDC2 (ENSMMDG00005000628) #15	polr3h (ENSMMDG00005000636) #16	aco2 (ENSMMDG00005000745) #17	TOB2 (ENSMMDG00005001914) #19	tefb (ENSMMDG00005001919) #20	ZC3H7B (ENSMMDG00005001940) #21	rangap1a (ENSMMDG00005002100) #22	ENSMMDG00005002106	rbx1 (ENSMMDG00005002108) #26	st13 (ENSMMDG00005002112) #29	xpnpep3 (ENSMMDG00005002129) #27	EP300 (ENSMMDG00005002268) #25	cbx7a (ENSMMDG00005002281)	TOP3A (ENSMMDG00005002336)	smcr8a (ENSMMDG00005005274)	bud31 (ENSMMDG00005005279)	pdap1b (ENSMMDG00005005282)	shmt1 (ENSMMDG00005005341)	cpsf4 (ENSMMDG00005006647)	atp5mf (ENSMMDG00005006656)	slc29a4a (ENSMMDG00005006664)	TNRC18 (ENSMMDG00005006669)
Cod	MODERN SPECIES	11	ENSGMOG00000009830	ENSGMOG00000009835	cdr2l (ENSGMOG00000023890)	ENSGMOG00000025476	ENSGMOG00000029031	alyref (ENSGMOG00000009882)	mcrip1 (ENSGMOG00000009896)	ENSGMOG00000009906	ENSGMOG00000034550	ENSGMOG00000001934 #16	ACO2 (ENSGMOG00000013297) #17	TOB2 (ENSGMOG00000031806) #19	ENSGMOG00000028909 #20	ZC3H7B (ENSGMOG00000001969) #21	ENSGMOG00000024966	RANGAP1 (ENSGMOG00000002020) #22	ENSGMOG00000002035	rbx1 (ENSGMOG00000002046) #26	st13 (ENSGMOG00000002050) #29	xpnpep3 (ENSGMOG00000002068) #27	ENSGMOG00000002088 #25	ENSGMOG00000035303	ENSGMOG00000002208	ENSGMOG00000002274	ENSGMOG00000002290	ENSGMOG00000023359
Protacanthopterygii	ANCESTRAL SPECIES	5	ENSGT00940000160068.a.a	ENSGT00940000154393	ENSGT00940000163472	ENSGT00940000155025.A.q	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT01030000235186	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383 #16	ENSGT00940000154892.m.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j #22	ENSGT00940000165277.b	ENSGT00940000155618 #26	ENSGT00390000001347 #29	ENSGT00940000153657.A #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b	ENSGT00730000111100.a.a #13	ENSGT00940000163663.A.a	ENSGT00950000182979.a.a.a.a ##32	ENSGT00940000155311.A.a	ENSGT00390000006956.b	ENSGT00940000160534	ENSGT00950000183197.a	ENSGT00940000156447.a.b	ENSGT00940000158431.a.a.b.e.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	416																ENSGT00440000039203.j.m #22	ENSGT00940000165277.b.g.b	ENSGT00940000165277.b.h	ENSGT00940000155618.j #26	ENSGT00390000001347.h #29	ENSGT00940000153657.A.a #27	ENSGT00940000155497.a.a #25	ENSGT00940000158365.f.b.a	ENSGT00730000111100.a.a.f #13	ENSGT00730000111100.a.a.e #13	ENSGT00940000163663.A.a	ENSGT00950000182979.a.a.a.a ##32	ENSGT00940000155311.A.a	ENSGT00390000006956.b.e	ENSGT00940000160534.a	ENSGT00950000183197.a.h
Salmoninae_a	ANCESTRAL SPECIES	102	ENSGT00940000157763.t	ENSGT00940000160068.a.a	ENSGT00940000154393	ENSGT00940000155025.A.q.a	ENSGT00950000183040.B.a	ENSGT00530000063509.A.g.e	ENSGT01030000235186.d	ENSGT00940000155955.C.i.a.f	ENSGT00390000002918.a.b.e.b #14	ENSGT00390000000022.b.a.a.i #15	ENSGT00390000004383.n #16	ENSGT00940000154892.m.a.b #17	ENSGT00940000154208.d.h #19	ENSGT00940000156578.a.a.j.b #20	ENSGT00390000018542.a.b.g #21	ENSGT00440000039203.j.m #22	ENSGT00940000165277.b.g.b	ENSGT00940000165277.b.h	ENSGT00940000155618.j #26	ENSGT00390000001347.h #29	ENSGT00940000153657.A.a #27	ENSGT00940000155497.a.a.h #25	ENSGT00940000158365.f.b.a	ENSGT00730000111100.a.a.f #13	ENSGT00940000163663.A.a.b	ENSGT00950000182979.a.a.a.a.f.a ##32	ENSGT00950000183197.a.g	ENSGT00940000156447.a.b.db.a	ENSGT00940000163148.a.b.b.b.d.b.b	ENSGT00940000158431.a.a.b.e.a.a	ENSGT00940000159871.b.a.a.l.b.a
Salmo	ANCESTRAL SPECIES	28	ENSGT00940000155813.i.a.n #35	ENSGT00940000157763.s	ENSGT00940000160068.a.a.h	ENSGT00940000155025.A.q.a.a	ENSGT00950000183040.B.a	ENSGT00530000063509.A.g.e	ENSGT01030000235186.d	ENSGT00940000155955.C.i.a.e.a	ENSGT00390000002918.a.b.e.b #14	ENSGT00390000000022.b.a.a.i #15	ENSGT00390000004383.n #16	ENSGT00940000154892.m.a.b #17	ENSGT00940000154208.d.h #19	ENSGT00940000156578.a.a.i.b #20	ENSGT00390000018542.a.b.g #21	ENSGT00440000039203.j.m #22	ENSGT00390000001347.h #29	ENSGT00940000153657.A.a #27	ENSGT00940000155497.a.a.h #25	ENSGT00940000158365.f.b.a	ENSGT00730000111100.a.a.e.c #13	ENSGT00940000163663.A.a.b	ENSGT00950000182979.a.a.a.a.f.a ##32	ENSGT00940000155311.A.a	ENSGT00390000006956.b.e	ENSGT00940000160534.b	ENSGT00950000183197.a.g	ENSGT00940000156447.a.b.db.a	ENSGT00940000163148.a.b.b.b.d.b.b	ENSGT00940000158431.a.a.b.e.a.a	ENSGT00940000159871.b.a.a.l.a
River trout	MODERN SPECIES	25	ENSSTUG00000033756	ENSSTUG00000033750	ENSSTUG00000033716	ENSSTUG00000033696	pick1 (ENSSTUG00000032820)	plbd1a (ENSSTUG00000032750)	ENSSTUG00000032742	ENSSTUG00000031694	PMM1 (ENSSTUG00000031550) #14	CSDC2 (ENSSTUG00000031536) #15	polr3h (ENSSTUG00000031515) #16	aco2 (ENSSTUG00000031214) #17	TOB2 (ENSSTUG00000031202) #19	tefb (ENSSTUG00000031198) #20	zc3h7ba (ENSSTUG00000031053) #21	rangap1a (ENSSTUG00000030928) #22	ENSSTUG00000030916 #26	st13 (ENSSTUG00000030839) #29	xpnpep3 (ENSSTUG00000030779) #27	EP300 (ENSSTUG00000029483) #25	cbx7a (ENSSTUG00000029434)	desi1a (ENSSTUG00000029427) #13	ENSSTUG00000029421	ENSSTUG00000029362 ##32	ENSSTUG00000029345	ENSSTUG00000029343	lsm12a (ENSSTUG00000029326)	HDAC5 (ENSSTUG00000026678)	cyb561 (ENSSTUG00000026539)	TANC2 (ENSSTUG00000025784)	ENSSTUG00000025713
Atlantic salmon	MODERN SPECIES	22	ENSSSAG00000001546 #35	ENSSSAG00000001559	ENSSSAG00000099916	ENSSSAG00000118047	pick1 (ENSSSAG00000001594)	ENSSSAG00000089879	ENSSSAG00000001766	ENSSSAG00000109495 #14	ENSSSAG00000104740	ENSSSAG00000087155 #16	ACO2 (ENSSSAG00000001906) #17	TOB2 (ENSSSAG00000081870) #19	ENSSSAG00000085979	TEF (ENSSSAG00000067764) #20	ZC3H7B (ENSSSAG00000002075) #21	RANGAP1 (ENSSSAG00000002274) #22	f10a1 (ENSSSAG00000002552) #29	xpnpep3 (ENSSSAG00000067392) #27	ENSSSAG00000096929 #25	cbx7a (ENSSSAG00000002685)	desi1a (ENSSSAG00000096818) #13	ENSSSAG00000113130	ENSSSAG00000002727 ##32	ENSSSAG00000002750	lsm12a (ENSSSAG00000089094)	ENSSSAG00000003038	cyb561 (ENSSSAG00000083759)	ENSSSAG00000009755	ENSSSAG00000086627	ENSSSAG00000081938	ENSSSAG00000091120
Oncorhynchus	ANCESTRAL SPECIES	48	ENSGT00940000155813.i.a.n #35	ENSGT00940000157763.s	ENSGT00940000160068.a.a.f	ENSGT00940000155025.A.q.a	ENSGT00950000183040.B.a	ENSGT00530000063509.A.g.e	ENSGT01030000235186.d	ENSGT00940000155955.C.i.a.f.b	ENSGT00390000002918.a.b.e.b #14	ENSGT00390000000022.b.a.a.i #15	ENSGT00390000004383.n #16	ENSGT00940000154892.m.a.b #17	ENSGT00940000154208.d.h #19	ENSGT00940000156578.a.a.j.b #20	ENSGT00390000018542.a.b.h.a.a.a #21	ENSGT00440000039203.j.m #22	ENSGT00940000165277.b.g.b	ENSGT00940000155618.i.a.a #26	ENSGT00390000001347.h #29	ENSGT00940000153657.A.a #27	ENSGT00940000155497.a.a.h #25	ENSGT00940000158365.f.b.a	ENSGT00730000111100.a.a.f #13	ENSGT00940000163663.A.a.b	ENSGT00950000182979.a.a.a.a.f.b.b ##32	ENSGT00940000155311.A.a.b	ENSGT00390000006956.b.e	ENSGT00940000160534.a.d	ENSGT00950000183197.a.g	ENSGT00940000156447.a.b.db.a	ENSGT00940000163148.a.b.b.b.d.b.a.a
Rainbow trout	MODERN SPECIES	3	ENSOMYG00000033006 #35	ENSOMYG00000033076	ENSOMYG00000033113	ENSOMYG00000033117	pick1 (ENSOMYG00000033334)	plbd1a (ENSOMYG00000034997)	ENSOMYG00000051295	ENSOMYG00000034477	ENSOMYG00000035020 #14	CSDC2 (ENSOMYG00000035031) #15	polr3h (ENSOMYG00000035042) #16	ACO2 (ENSOMYG00000035229) #17	TOB2 (ENSOMYG00000036459) #19	tefb (ENSOMYG00000036466) #20	ZC3H7B (ENSOMYG00000036541) #21	RANGAP1 (ENSOMYG00000036705) #22	rbx1 (ENSOMYG00000036965) #26	st13 (ENSOMYG00000036985) #29	xpnpep3 (ENSOMYG00000067792) #27	ENSOMYG00000037130 #25	cbx7a (ENSOMYG00000037448)	desi1a (ENSOMYG00000062758) #13	ENSOMYG00000037461	ENSOMYG00000066041 ##32	ENSOMYG00000037494 ##32	ENSOMYG00000037508	lsm12a (ENSOMYG00000037515)	ENSOMYG00000037848	cyb561 (ENSOMYG00000037521)	ENSOMYG00000039137	ENSOMYG00000055189
Oncorhynchus_a	ANCESTRAL SPECIES	44	ENSGT00940000157763.s	ENSGT00940000160068.a.a.f	ENSGT00940000155025.A.q.a	ENSGT00950000183040.B.a	ENSGT00530000063509.A.g.e	ENSGT01030000235186.d.a	ENSGT00940000155955.C.i.a.f.b	ENSGT00390000002918.a.b.e.b #14	ENSGT00390000002918.a.b.e.a.a.b #14	ENSGT00390000000022.b.a.a.i #15	ENSGT00390000004383.n #16	ENSGT00940000154892.m.a.b #17	ENSGT00940000154208.d.h #19	ENSGT00940000156578.a.a.j.b #20	ENSGT00390000018542.a.b.h.a.a.a #21	ENSGT00440000039203.j.m #22	ENSGT00940000165277.b.g.b	ENSGT00940000155618.i.a.a #26	ENSGT00390000001347.h #29	ENSGT00940000153657.A.a #27	ENSGT00940000155497.a.a.h #25	ENSGT00940000158365.f.b.a	ENSGT00730000111100.a.a.e.b #13	ENSGT00940000163663.A.a.b	ENSGT00940000155311.A.a.b	ENSGT00390000006956.b.e	ENSGT00940000160534.a.d	ENSGT00950000183197.a.g	ENSGT00940000156447.a.b.db.a	ENSGT00940000163148.a.b.b.b.d.b.a.a.a	ENSGT00940000158431.a.a.b.e.a.a
Chinook salmon	MODERN SPECIES	33	ENSOTSG00005004397 #35	ENSOTSG00005004401	ENSOTSG00005004403	ENSOTSG00005004404	pick1 (ENSOTSG00005004418)	ENSOTSG00005006135	ENSOTSG00005006148	PMM1 (ENSOTSG00005006321) #14	ENSOTSG00005006322	CSDC2 (ENSOTSG00005006324) #15	polr3h (ENSOTSG00005006327) #16	aco2 (ENSOTSG00005006356) #17	TOB2 (ENSOTSG00005008834) #19	tefb (ENSOTSG00005008835) #20	ZC3H7B (ENSOTSG00005008836) #21	RANGAP1 (ENSOTSG00005008840) #22	ENSOTSG00005009272	ENSOTSG00005009274	st13 (ENSOTSG00005009275) #29	xpnpep3 (ENSOTSG00005009338) #27	EP300 (ENSOTSG00005009352) #25	cbx7a (ENSOTSG00005010488)	desi1a (ENSOTSG00005010489) #13	ENSOTSG00005010490	PKN1 (ENSOTSG00005010492)	ENSOTSG00005010494	MCOLN1 (ENSOTSG00005010496)	pglyrp6 (ENSOTSG00005010502)	trappc5 (ENSOTSG00005010503)	ENSOTSG00005010505	ptger1b (ENSOTSG00005010510)
Coho salmon	MODERN SPECIES	26	ENSOKIG00005010733 #35	ENSOKIG00005010707	ENSOKIG00005010699	ENSOKIG00005010676	pick1 (ENSOKIG00005010599)	plbd1a (ENSOKIG00005010559)	ENSOKIG00005010551	ENSOKIG00005009011	PMM1 (ENSOKIG00005008818) #14	CSDC2 (ENSOKIG00005008797) #15	polr3h (ENSOKIG00005008752) #16	ACO2 (ENSOKIG00005007920) #17	tefb (ENSOKIG00005007826) #20	ZC3H7B (ENSOKIG00005007813) #21	ENSOKIG00005007803	RANGAP1 (ENSOKIG00005007651) #22	rbx1 (ENSOKIG00005007592) #26	st13 (ENSOKIG00005007340) #29	xpnpep3 (ENSOKIG00005007300) #27	EP300 (ENSOKIG00005006736) #25	cbx7a (ENSOKIG00005006689)	desi1a (ENSOKIG00005006679) #13	ENSOKIG00005006670	ENSOKIG00005006629 ##32	ENSOKIG00005006619	lsm12a (ENSOKIG00005006606)	HDAC5 (ENSOKIG00005005672)	cyb561 (ENSOKIG00005005597)	TANC2 (ENSOKIG00005003589)	ENSOKIG00005003343	ENSOKIG00005003336
Huchen	MODERN SPECIES	192	ENSHHUG00000037411	ENSHHUG00000037412 #35	ENSHHUG00000037420	ENSHHUG00000037449	ENSHHUG00000037451	pick1 (ENSHHUG00000037461)	ENSHHUG00000037563	ENSHHUG00000037568	PMM1 (ENSHHUG00000037601) #14	CSDC2 (ENSHHUG00000037608) #15	polr3h (ENSHHUG00000037611) #16	aco2 (ENSHHUG00000037628) #17	TOB2 (ENSHHUG00000037672) #19	tefb (ENSHHUG00000037673) #20	ZC3H7B (ENSHHUG00000037677) #21	RANGAP1 (ENSHHUG00000037756) #22	ENSHHUG00000037987	ENSHHUG00000037992 #26	st13 (ENSHHUG00000038011) #29	xpnpep3 (ENSHHUG00000038226) #27	EP300 (ENSHHUG00000038280) #25	cbx7a (ENSHHUG00000038356)	desi1a (ENSHHUG00000038363) #13	ENSHHUG00000038366 ##32	lsm12a (ENSHHUG00000038414)	HDAC5 (ENSHHUG00000038429)
Salmoninae	ANCESTRAL SPECIES	178	ENSGT00950000183040.B.b	ENSGT00940000163472	ENSGT00940000155025.A.q.a	ENSGT00950000183040.B.a	ENSGT00530000063509.A.g	ENSGT01030000235186.d	ENSGT00940000155955.C.i.a.f	ENSGT00390000002918.a.b.e.b #14	ENSGT00390000002918.a.b.e.a.a.a #14	ENSGT00390000000022.b.a.a #15	ENSGT00390000004383.m #16	ENSGT00940000154892.m.a.a #17	ENSGT00940000154208.d #19	ENSGT00940000156578.a.a.j.b #20	ENSGT00390000018542.a.b #21	ENSGT00440000039203.j.n #22	ENSGT00940000165277.b.g.a	ENSGT00940000155618.i.a #26	ENSGT00390000001347.g #29	ENSGT00940000153657.A.b #27	ENSGT00940000158365.f.b.b
Salmoninae_a	ANCESTRAL SPECIES	134	ENSGT00940000163472	ENSGT00940000155025.A.q.b	ENSGT00950000183040.B.b	ENSGT00530000063509.A.g.f	ENSGT01030000235186.c	ENSGT00940000155955.C.i.a.e.b	ENSGT00390000002918.a.b.f #14	ENSGT00390000002918.a.b.e.a.a.a #14	ENSGT00390000000022.b.a.a.j #15	ENSGT00390000004383.m #16	ENSGT00940000154892.m.a.a #17	ENSGT00940000154208.d.g #19	ENSGT00940000156578.a.a.i #20	ENSGT00940000156578.a.a.j.a #20	ENSGT00390000018542.a.b.h #21	ENSGT00440000039203.j.n #22	ENSGT00940000165277.b.g.a	ENSGT00940000155618.i.a #26	ENSGT00390000001347.g #29	ENSGT00940000153657.A.b #27	ENSGT00940000155497.a.a.g #25	ENSGT00940000158365.f.b.b	ENSGT00730000111100.a.a.e #13	ENSGT00940000163663.A.a.a	ENSGT00950000182979.a.a.a.a.f.b ##32	ENSGT00940000155311.A.a	ENSGT00390000006956.b.e	ENSGT00940000160534.b	ENSGT00390000006956.b.f	ENSGT00940000160534.a	ENSGT00950000183197.a.h
Salmo	ANCESTRAL SPECIES	53	ENSGT00940000154393.p	ENSGT00940000163472.a	ENSGT00940000154393.o	ENSGT00940000155025.A.q.a.b	ENSGT00950000183040.B.b	ENSGT00530000063509.A.g.f	ENSGT01030000235186.c	ENSGT00940000155955.C.i.a.e.b	ENSGT00390000002918.a.b.f #14	ENSGT00390000000022.b.a.a.j #15	ENSGT00390000004383.m #16	ENSGT00940000154892.m.a.a #17	ENSGT00940000154208.d.g #19	ENSGT00940000156578.a.a.i.a #20	ENSGT00390000018542.a.b.h #21	ENSGT00440000039203.j.n #22	ENSGT00940000165277.b.h	ENSGT00940000155618.j #26	ENSGT00390000001347.g #29	ENSGT00940000153657.A.b #27	ENSGT00940000155497.a.a.g #25	ENSGT00940000158365.f.b.b	ENSGT00730000111100.a.a.e.d #13	ENSGT00940000163663.A.a.a	ENSGT00950000182979.a.a.a.a.f.b ##32	ENSGT00390000006956.b.f	ENSGT00940000160534.a	ENSGT00950000183197.a.h	ENSGT00940000156447.a.b.db.b	ENSGT00940000163148.a.b.b.b.d.b.a.b	ENSGT00940000158431.a.a.b.e.a.b
River trout	MODERN SPECIES		ENSSTUG00000028971	ENSSTUG00000028963	ENSSTUG00000028944	ENSSTUG00000028914	pick1 (ENSSTUG00000027668)	plbd1a (ENSSTUG00000027597)	ENSSTUG00000027587	ENSSTUG00000027296	PMM1 (ENSSTUG00000027243) #14	CSDC2 (ENSSTUG00000027238) #15	polr3h (ENSSTUG00000027231) #16	aco2 (ENSSTUG00000026931) #17	TOB2 (ENSSTUG00000026918) #19	tefb (ENSSTUG00000026913) #20	ZC3H7B (ENSSTUG00000026806) #21	RANGAP1 (ENSSTUG00000026304) #22	ENSSTUG00000026276	ENSSTUG00000026239 #26	st13 (ENSSTUG00000026164) #29	xpnpep3 (ENSSTUG00000025934) #27	EP300 (ENSSTUG00000025317) #25	cbx7a (ENSSTUG00000025298)	desi1a (ENSSTUG00000026529) #13	ENSSTUG00000026517	ENSSTUG00000026495 ##32	lsm12a (ENSSTUG00000026474)	HDAC5 (ENSSTUG00000024516)	cyb561 (ENSSTUG00000024462)	TANC2 (ENSSTUG00000021422)	ENSSTUG00000021295	ENSSTUG00000021284
Atlantic salmon	MODERN SPECIES	25	ENSSSAG00000121294	ENSSSAG00000060007	ENSSSAG00000117973	ENSSSAG00000001570	ENSSSAG00000068329	pick1 (ENSSSAG00000068227)	plbd1a (ENSSSAG00000068190)	ENSSSAG00000088359	ENSSSAG00000067903	ENSSSAG00000067851 #14	ENSSSAG00000067839 #16	ACO2 (ENSSSAG00000067775) #17	TOB2 (ENSSSAG00000118025) #19	TEF (ENSSSAG00000106448) #20	ZC3H7B (ENSSSAG00000067713) #21	RANGAP1 (ENSSSAG00000067438) #22	ENSSSAG00000067422	rbx1 (ENSSSAG00000067418) #26	st13 (ENSSSAG00000067413) #29	xpnpep3 (ENSSSAG00000002605) #27	ENSSSAG00000067198 #25	cbx7a (ENSSSAG00000084420)	desi1a (ENSSSAG00000092253) #13	ENSSSAG00000104438	ENSSSAG00000067018 ##32	lsm12a (ENSSSAG00000103324)	ENSSSAG00000058412	cyb561 (ENSSSAG00000006524)	ENSSSAG00000050353	ENSSSAG00000081056	ENSSSAG00000050012
Oncorhynchus	ANCESTRAL SPECIES	37	ENSGT00940000160068.a.a.e	ENSGT00940000155025.A.q.b.b	ENSGT00940000163472	ENSGT00940000155025.A.q.b.a.a	ENSGT00950000183040.B.b	ENSGT00530000063509.A.g.f	ENSGT01030000235186.c	ENSGT00940000155955.C.i.a.f.a	ENSGT00390000002918.a.b.e.a.a.a #14	ENSGT00390000000022.b.a.a.j #15	ENSGT00390000004383.m #16	ENSGT00940000154892.m.a.a #17	ENSGT00940000154208.d.g #19	ENSGT00940000156578.a.a.j.a #20	ENSGT00390000018542.a.b.h.b #21	ENSGT00440000039203.j.n #22	ENSGT00940000165277.b.g.a	ENSGT00940000155618.i.a.b #26	ENSGT00390000001347.g #29	ENSGT00940000153657.A.b #27	ENSGT00940000155497.a.a.g #25	ENSGT00940000158365.f.b.b	ENSGT00730000111100.a.a.e #13	ENSGT00940000163663.A.a.a	ENSGT00950000182979.a.a.a.a.f.b.a ##32	ENSGT00940000155311.A.a.a	ENSGT00390000006956.b.f	ENSGT00940000160534.a.c	ENSGT00950000183197.a.h	ENSGT00940000156447.a.b.db.b	ENSGT00940000163148.a.b.b.b.d.b.a.b
Rainbow trout	MODERN SPECIES	4	ENSOMYG00000009645	ENSOMYG00000010066	pick1 (ENSOMYG00000061019)	plbd1a (ENSOMYG00000009119)	ENSOMYG00000008865	ENSOMYG00000008610	ENSOMYG00000057300	ENSOMYG00000008263 #14	CSDC2 (ENSOMYG00000008209) #15	polr3h (ENSOMYG00000008202) #16	ACO2 (ENSOMYG00000007226) #17	TOB2 (ENSOMYG00000006225) #19	ENSOMYG00000070651	tefb (ENSOMYG00000006197) #20	ZC3H7B (ENSOMYG00000006040) #21	RANGAP1 (ENSOMYG00000005503) #22	ENSOMYG00000004977	rbx1 (ENSOMYG00000053458) #26	st13 (ENSOMYG00000004922) #29	xpnpep3 (ENSOMYG00000004862) #27	ENSOMYG00000004198 #25	cbx7a (ENSOMYG00000057955)	ENSOMYG00000054216	ENSOMYG00000003316	ENSOMYG00000044225 ##32	ENSOMYG00000044220 ##32	ENSOMYG00000051856	ENSOMYG00000058979	lsm12a (ENSOMYG00000044211)	ENSOMYG00000044181	cyb561 (ENSOMYG00000044166)
Oncorhynchus_a	ANCESTRAL SPECIES	79	ENSGT00940000157763.t	ENSGT00940000160068.a.a.e	ENSGT00940000155025.A.q.b.b	ENSGT00940000163472	ENSGT00940000155025.A.q.b.a.a	ENSGT00530000063509.A.g.f	ENSGT01030000235186.c	ENSGT01030000235186.d.b	ENSGT00940000155955.C.i.a.f.a	ENSGT00390000002918.a.b.e.a.a.a #14	ENSGT00390000000022.b.a.a.j #15	ENSGT00390000004383.m #16	ENSGT00940000154892.m.a.a #17	ENSGT00940000156578.a.a.j.a #20	ENSGT00390000018542.a.b.h.a.b #21	ENSGT00440000039203.j.n #22	ENSGT00940000165277.b.g.a	ENSGT00940000155618.i.a.b #26	ENSGT00390000001347.g #29	ENSGT00940000153657.A.b #27	ENSGT00940000155497.a.a.g #25	ENSGT00940000158365.f.b.b	ENSGT00730000111100.a.a.e.a #13	ENSGT00940000163663.A.a.a	ENSGT00950000182979.a.a.a.a.f.b.a ##32	ENSGT00950000182979.a.a.a.a.f.b.b ##32	ENSGT00940000155311.A.a.a	ENSGT00390000006956.b.f	ENSGT00940000160534.a.c	ENSGT00950000183197.a.h	ENSGT00940000156447.a.b.db.b
Chinook salmon	MODERN SPECIES	19	ENSOTSG00005033196 #35	ENSOTSG00005033195	ENSOTSG00005033194	ENSOTSG00005033193	ENSOTSG00005033082	plbd1a (ENSOTSG00005031701)	ENSOTSG00005031695	ENSOTSG00005031421	ENSOTSG00005031412	PMM1 (ENSOTSG00005031411) #14	CSDC2 (ENSOTSG00005031410) #15	polr3h (ENSOTSG00005031408) #16	aco2 (ENSOTSG00005030179) #17	tefb (ENSOTSG00005030172) #20	ZC3H7B (ENSOTSG00005030170) #21	rangap1a (ENSOTSG00005029942) #22	ENSOTSG00005029941	rbx1 (ENSOTSG00005029939) #26	st13 (ENSOTSG00005029938) #29	xpnpep3 (ENSOTSG00005029937) #27	EP300 (ENSOTSG00005028426) #25	cbx7a (ENSOTSG00005028409)	desi1a (ENSOTSG00005028406) #13	ENSOTSG00005028402	ENSOTSG00005028401 ##32	ENSOTSG00005028399 ##32	ENSOTSG00005028398	lsm12a (ENSOTSG00005028397)	HDAC5 (ENSOTSG00005027089)	cyb561 (ENSOTSG00005027086)	TANC2 (ENSOTSG00005027068)
Coho salmon	MODERN SPECIES	1	ENSOKIG00005015065	ENSOKIG00005015053	ENSOKIG00005015042	ENSOKIG00005015032	pick1 (ENSOKIG00005014923)	plbd1a (ENSOKIG00005014595)	ENSOKIG00005014564	ENSOKIG00005014557	ENSOKIG00005014307	PMM1 (ENSOKIG00005014275) #14	CSDC2 (ENSOKIG00005014271) #15	polr3h (ENSOKIG00005014258) #16	ACO2 (ENSOKIG00005013913) #17	tefb (ENSOKIG00005013869) #20	zc3h7ba (ENSOKIG00005013738) #21	rangap1a (ENSOKIG00005012910) #22	ENSOKIG00005012826	rbx1 (ENSOKIG00005012795) #26	st13 (ENSOKIG00005012750) #29	ENSOKIG00005012742	xpnpep3 (ENSOKIG00005012698) #27	EP300 (ENSOKIG00005011876) #25	cbx7a (ENSOKIG00005011793)	desi1a (ENSOKIG00005011749) #13	ENSOKIG00005011736	ENSOKIG00005011696 ##32	ENSOKIG00005011675	lsm12a (ENSOKIG00005011655)	HDAC5 (ENSOKIG00005007390)	cyb561 (ENSOKIG00005007163)	TANC2 (ENSOKIG00005005598)
Huchen	MODERN SPECIES	656	ENSHHUG00000000501	ENSHHUG00000000485	ENSHHUG00000000482	ENSHHUG00000000468	plbd1a (ENSHHUG00000000074)	ENSHHUG00000000061	ENSHHUG00000000024	PMM1 (ENSHHUG00000052770) #14	CSDC2 (ENSHHUG00000052769) #15	polr3h (ENSHHUG00000052768) #16	aco2 (ENSHHUG00000052758) #17	TOB2 (ENSHHUG00000052757) #19	tefb (ENSHHUG00000052756) #20	ENSHHUG00000052754	zc3h7ba (ENSHHUG00000052750) #21	rangap1a (ENSHHUG00000052710) #22	ENSHHUG00000052708	rbx1 (ENSHHUG00000052707) #26	st13 (ENSHHUG00000052703) #29	xpnpep3 (ENSHHUG00000052701) #27	EP300 (ENSHHUG00000052694) #25	cbx7a (ENSHHUG00000052693)	desi1a (ENSHHUG00000052691) #13	ENSHHUG00000052690	ENSHHUG00000052689
Northern pike	MODERN SPECIES	10	CSNK1E (ENSELUG00000008252)	ENSELUG00000008210 #35	ENSELUG00000000301	ENSELUG00000008139	LGALS2 (ENSELUG00000032684)	pick1 (ENSELUG00000008084)	plbd1a (ENSELUG00000008057)	ENSELUG00000007896	ENSELUG00000008023	PMM1 (ENSELUG00000007878) #14	CSDC2 (ENSELUG00000007859) #15	polr3h (ENSELUG00000007834) #16	aco2 (ENSELUG00000007787) #17	TOB2 (ENSELUG00000007725) #19	tefb (ENSELUG00000026878) #20	rangap1a (ENSELUG00000007572) #22	ENSELUG00000007480	rbx1 (ENSELUG00000007464) #26	st13 (ENSELUG00000007392) #29	xpnpep3 (ENSELUG00000007360) #27	EP300 (ENSELUG00000007331) #25	cbx7a (ENSELUG00000007292)	desi1a (ENSELUG00000007273) #13	ENSELUG00000007249	ENSELUG00000007233 ##32	ENSELUG00000026136	lsm12a (ENSELUG00000000256)	HDAC5 (ENSELUG00000007133)	cyb561 (ENSELUG00000001611)	TANC2 (ENSELUG00000006897)	ENSELUG00000029190
Osteoglossiformes	ANCESTRAL SPECIES	691																ENSGT00440000039203.j #22	ENSGT00940000165277.d
Asian bonytongue	MODERN SPECIES	18	dmc1 (ENSSFOG00015012276)	TMEM184B (ENSSFOG00015012217)	CSNK1E (ENSSFOG00015012152)	ENSSFOG00015012107 #35	ENSSFOG00015012068	ENSSFOG00015012038	pick1 (ENSSFOG00015011966)	ENSSFOG00015012010	plbd1a (ENSSFOG00015011922)	ENSSFOG00015011915	ENSSFOG00015011567	csdc2a (ENSSFOG00015027047) #15	polr3h (ENSSFOG00015011506) #16	TOB2 (ENSSFOG00015011501) #19	ZC3H7B (ENSSFOG00015011477) #21	rangap1a (ENSSFOG00015011432) #22	ENSSFOG00015011414	rbx1 (ENSSFOG00015011402) #26	st13 (ENSSFOG00015011345) #29	xpnpep3 (ENSSFOG00015011312) #27	EP300 (ENSSFOG00015011294) #25	josd1 (ENSSFOG00015011264)	ENSSFOG00015011250	ENSSFOG00015011195 ##32	dhps (ENSSFOG00015011150)	slc25a17 (ENSSFOG00015011106) #30	ENSSFOG00015011044	ENSSFOG00015026046	ENSSFOG00015010934	ENSSFOG00015010879	ENSSFOG00015010849
P. kingsleyae	MODERN SPECIES	250	TNRC6B (ENSPKIG00000008057) #35	ENSPKIG00000008122	ENSPKIG00000008163	ENSPKIG00000008176	SH3BP1 (ENSPKIG00000008222)	ENSPKIG00000008305	pick1 (ENSPKIG00000008339)	plbd1a (ENSPKIG00000008398)	ENSPKIG00000008496	ENSPKIG00000008453	csdc2a (ENSPKIG00000008510) #15	polr3h (ENSPKIG00000008527) #16	aco2 (ENSPKIG00000008567) #17	TOB2 (ENSPKIG00000008630) #19	ZC3H7B (ENSPKIG00000008681) #21	RANGAP1 (ENSPKIG00000008878) #22	ENSPKIG00000009068	chadlb (ENSPKIG00000009110)	rbx1 (ENSPKIG00000009163) #26	st13 (ENSPKIG00000009208) #29	EP300 (ENSPKIG00000009400) #25	TMEM235 (ENSPKIG00000009672)	tha1 (ENSPKIG00000009697)	socs3b (ENSPKIG00000009732)	cyth1a (ENSPKIG00000009776)
Spotted gar	MODERN SPECIES	650	ENSLOCG00000011691	ENSLOCG00000011684	ENSLOCG00000011678	ENSLOCG00000011670	ENSLOCG00000017848	ENSLOCG00000011665	slc16a8 (ENSLOCG00000011658)	GUCY2C (ENSLOCG00000011647)	ENSLOCG00000011637 #14	csdc2a (ENSLOCG00000011627) #15	polr3h (ENSLOCG00000011621) #16	aco2 (ENSLOCG00000011607) #17	TOB2 (ENSLOCG00000011604) #19	tefa (ENSLOCG00000011595) #20	zc3h7ba (ENSLOCG00000011588) #21	rangap1a (ENSLOCG00000011582) #22	ENSLOCG00000011574 #24	xpnpep3 (ENSLOCG00000011565) #27	ENSLOCG00000011547 #25	josd1 (ENSLOCG00000011543)	xrcc6 (ENSLOCG00000011533) #12	desi1a (ENSLOCG00000011526) #13	ENSLOCG00000011515	ENSLOCG00000011497 ##32	slc25a17 (ENSLOCG00000011492) #30	ENSLOCG00000011482	ENSLOCG00000011475	ENSLOCG00000017847	pla2g6 (ENSLOCG00000011469)	baiap2l2b (ENSLOCG00000011463)	ENSLOCG00000011456
Reedfish	MODERN SPECIES	3	ENSECRG00000015789	ENSECRG00000015808	ENSECRG00000015824	ENSECRG00000015841	ENSECRG00000015860	ENSECRG00000015897	ENSECRG00000015952	PMM1 (ENSECRG00000015991) #14	csdc2a (ENSECRG00000016018) #15	polr3h (ENSECRG00000016042) #16	aco2 (ENSECRG00000016067) #17	phf5a (ENSECRG00000016102) #18	TOB2 (ENSECRG00000016128) #19	tefa (ENSECRG00000016143) #20	zc3h7ba (ENSECRG00000016172) #21	rangap1a (ENSECRG00000016243) #22	CHADL (ENSECRG00000016311) #23	l3mbtl2 (ENSECRG00000016435) #24	ENSECRG00000016483	rbx1 (ENSECRG00000016541) #26	st13 (ENSECRG00000016594) #29	xpnpep3 (ENSECRG00000016709) #27	EP300 (ENSECRG00000016746) #25	ENSECRG00000016783	ENSECRG00000016802	ENSECRG00000016825	ENSECRG00000016848	ENSECRG00000016866	ENSECRG00000016986	ENSECRG00000017346	ENSECRG00000017383
Elephant shark	MODERN SPECIES	1746	MCHR1 (ENSCMIG00000005155) #31	ENSCMIG00000005159 ##32	ENSCMIG00000005161 ##32	ENSCMIG00000005165 ##32	desi1b (ENSCMIG00000005168) #13	ENSCMIG00000005174 #14	csdc2a (ENSCMIG00000005177) #15	polr3h (ENSCMIG00000005180) #16	ENSCMIG00000005181	ENSCMIG00000005184	aco2 (ENSCMIG00000005265) #17	phf5a (ENSCMIG00000005498) #18	TOB2 (ENSCMIG00000005503) #19	tefa (ENSCMIG00000005514) #20	ZC3H7B (ENSCMIG00000005534) #21	rangap1a (ENSCMIG00000005602) #22	ENSCMIG00000005635	ENSCMIG00000005640	L3MBTL2 (ENSCMIG00000005644) #24	EP300 (ENSCMIG00000005795) #25	rbx1 (ENSCMIG00000006002) #26	xpnpep3 (ENSCMIG00000006008) #27	st13 (ENSCMIG00000006024) #29	ENSCMIG00000006038	ENSCMIG00000006043	ENSCMIG00000006049	ENSCMIG00000006051 #10	ENSCMIG00000006056 #10	ENSCMIG00000006062 #10	ENSCMIG00000006073	ENSCMIG00000006085
Cyclostomata	ANCESTRAL SPECIES	564																ENSGT00440000039203 #22	ENSGT00940000165670
Lamprey	MODERN SPECIES	607																RANGAP1 (ENSPMAG00000000110) #22	ENSPMAG00000000113	nme3 (ENSPMAG00000000119)	MBTD1 (ENSPMAG00000000120) ##24
Hagfish	MODERN SPECIES	119															ENSEBUG00000004863	ENSEBUG00000012710 #22	ENSEBUG00000011528
Ciona	DUPLICATION
Ciona	ANCESTRAL SPECIES																	ENSGT00440000039203.k #22
Ciona intestinalis	MODERN SPECIES	8	ENSCING00000022067	ENSCING00000005480	ENSCING00000005483	ENSCING00000013656	ENSCING00000020169	ENSCING00000008992	ENSCING00000023062	ENSCING00000013647	ENSCING00000024278	ENSCING00000008994	ENSCING00000008995	ENSCING00000008996	ENSCING00000022062	ENSCING00000013649	ENSCING00000008998 #22	ENSCING00000022468 #22	prox-b (ENSCING00000008999)	ENSCING00000009000	ENSCING00000020494	ENSCING00000013650	ENSCING00000010516	ENSCING00000019878	ENSCING00000009002	ENSCING00000009003	ENSCING00000009005	ENSCING00000013651	ENSCING00000009006	ENSCING00000009007	ENSCING00000010027	ENSCING00000009008	ENSCING00000018082
Ciona	ANCESTRAL SPECIES																	ENSGT00440000039203.l #22
Ciona savignyi	MODERN SPECIES	290														ENSCSAVG00000004133	ENSCSAVG00000004137	ENSCSAVG00000004140 #22	ENSCSAVG00000004164	ENSCSAVG00000004689	ENSCSAVG00000004915	ENSCSAVG00000004918	ENSCSAVG00000005087	ENSCSAVG00000005090	ENSCSAVG00000005094	ENSCSAVG00000005133	ENSCSAVG00000005203	ENSCSAVG00000005207	ENSCSAVG00000005210	ENSCSAVG00000005410	ENSCSAVG00000005421	ENSCSAVG00000005428	ENSCSAVG00000005431
Ciona intestinalis	MODERN SPECIES	8	ENSCING00000020552	ENSCING00000022067	ENSCING00000005480	ENSCING00000005483	ENSCING00000013656	ENSCING00000020169	ENSCING00000008992	ENSCING00000023062	ENSCING00000013647	ENSCING00000024278	ENSCING00000008994	ENSCING00000008995	ENSCING00000008996	ENSCING00000022062	ENSCING00000013649	ENSCING00000008998 #22	ENSCING00000022468 #22	prox-b (ENSCING00000008999)	ENSCING00000009000	ENSCING00000020494	ENSCING00000013650	ENSCING00000010516	ENSCING00000019878	ENSCING00000009002	ENSCING00000009003	ENSCING00000009005	ENSCING00000013651	ENSCING00000009006	ENSCING00000009007	ENSCING00000010027	ENSCING00000009008
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT00440000039203 #22
Fruitfly	MODERN SPECIES	16	CG17349 (FBgn0032771)	CG17350 (FBgn0032772)	fon (FBgn0032773)	CG17549 (FBgn0032774)	CG17544 (FBgn0032775)	CG31798 (FBgn0051798)	Pax (FBgn0041789)	Lectin-galC1 (FBgn0016675)	lectin-37Da (FBgn0053532)	lectin-37Db (FBgn0053533)	Alp12 (FBgn0032779)	CG13085 (FBgn0032780)	RtcB (FBgn0032781)	Rab9 (FBgn0032782)	CG10237 (FBgn0032783)	RanGAP (FBgn0003346) #22	Hs2st (FBgn0024230)	Top2 (FBgn0284220)	CG10026 (FBgn0032785)	tj (FBgn0000964)	CG10195 (FBgn0032787)	CG13084 (FBgn0032788)	CG13083 (FBgn0032789)	CG10194 (FBgn0032790)	CG18094 (FBgn0032791)	CG10189 (FBgn0032793)	swm (FBgn0002044)	Top3alpha (FBgn0040268)	cyst (FBgn0032796)	Hasp (FBgn0032797)	CG10132 (FBgn0032798)
Caenorhabditis elegans	MODERN SPECIES	2	ZK688.5 (WBGene00022800)	fahd-1 (WBGene00022798)	ZK688.4 (WBGene00022799)	ZK688.10 (WBGene00044447)	best-24 (WBGene00022797)	pcp-5 (WBGene00022801)	ZK688.1 (WBGene00022796)	ZK688.7 (WBGene00022802)	ZK688.12 (WBGene00044763)	gly-3 (WBGene00001628)	tag-250 (WBGene00016203)	C29E4.14 (WBGene00044634)	C29E4.17 (WBGene00194730)	C29E4.13 (WBGene00043051)	npp-15 (WBGene00003801)	ran-2 (WBGene00004303) #22	C29E4.10 (WBGene00016207)	C29E4.12 (WBGene00016209)	kle-2 (WBGene00016202)	gsto-1 (WBGene00016204)	col-90 (WBGene00000665)	let-754 (WBGene00002879)	C29E4.15 (WBGene00045246)	C29E4.9 (WBGene00016206)	C29E4.11 (WBGene00016208)	F54H12.10 (WBGene00305131)	F54H12.4 (WBGene00018844)	F54H12.2 (WBGene00018842)	F54H12.8 (WBGene00045247)	F54H12.7 (WBGene00044633)	F54H12.5 (WBGene00018845)
Yeast	MODERN SPECIES	13	YMR247W-A	RKR1 (YMR247C)	FAA4 (YMR246W)	YMR245W	COA6 (YMR244C-A)	YMR244W	ZRC1 (YMR243C)	YMR242W-A	RPL20A (YMR242C)	YHM2 (YMR241W)	CUS1 (YMR240C)	RNT1 (YMR239C)	DFG5 (YMR238W)	BCH1 (YMR237W)	TAF9 (YMR236W)	RNA1 (YMR235C) #22	RNH1 (YMR234W)	TRI1 (YMR233W)	FUS2 (YMR232W)	PEP5 (YMR231W)	YMR230W-A	RPS10B (YMR230W)	RRP5 (YMR229C)	MTF1 (YMR228W)	TAF7 (YMR227C)	YMR226C	MRPL44 (YMR225C)	MRE11 (YMR224C)	UBP8 (YMR223W)	FSH2 (YMR222C)	FMP42 (YMR221C)