Murinae	ANCESTRAL SPECIES	2	ENSGT00940000155184	ENSGT00950000182919.A	ENSGT00390000007284	ENSGT00730000111138	ENSGT00940000157719	ENSGT00940000164601	ENSGT00940000155625	ENSGT00940000160200	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00390000002200.a.b	ENSGT00940000162798	ENSGT00940000154635.a	ENSGT00950000182992.a.b.b	ENSGT00940000154968 #22	ENSGT00940000154824.a	ENSGT00390000001688	ENSGT00940000157532	ENSGT00940000156113	ENSGT00390000006658.a.b	ENSGT00390000000521	ENSGT00940000153801.b	ENSGT00950000183108.b.a.b	ENSGT00390000007813	ENSGT00950000183131.b.a	ENSGT00530000068397	ENSGT00390000003680.b	ENSGT00390000012840	ENSGT00940000164066	ENSGT01100000263544.c.b
Mus	ANCESTRAL SPECIES	3	ENSGT00950000182919.A	ENSGT00390000007284	ENSGT00730000111138	ENSGT00940000157719	ENSGT00940000164601	ENSGT00940000155625	ENSGT00940000160200	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00390000002200.a.b	ENSGT00940000162798	ENSGT00940000154635.a	ENSGT00860000135874	ENSGT00950000182992.a.b.b	ENSGT00940000154968 #22	ENSGT00940000154824.a	ENSGT00390000001688	ENSGT00940000157532	ENSGT00940000156113	ENSGT00390000006658.a.b	ENSGT00390000000521	ENSGT00940000153801.b	ENSGT00950000183108.b.a.b	ENSGT00390000007813	ENSGT00950000183131.b.a	ENSGT00530000068397	ENSGT00390000003680.b	ENSGT00390000012840	ENSGT00940000164066	ENSGT01100000263544.c.b
Mus_A	ANCESTRAL SPECIES	3	ENSGT00950000182919.A	ENSGT00390000007284	ENSGT00730000111138	ENSGT00940000157719	ENSGT00940000164601	ENSGT00940000155625	ENSGT00940000160200	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00390000002200.a.b	ENSGT00940000162798	ENSGT00940000154635.a.g	ENSGT00860000135874	ENSGT00950000182992.a.b.b	ENSGT00940000154968 #22	ENSGT00940000154824.a	ENSGT00390000001688	ENSGT00940000157532	ENSGT00940000156113	ENSGT00390000006658.a.b	ENSGT00390000000521	ENSGT00940000153801.b	ENSGT00950000183108.b.a.b	ENSGT00390000007813	ENSGT00950000183131.b.a	ENSGT00530000068397	ENSGT00390000003680.b	ENSGT00390000012840	ENSGT00940000164066	ENSGT01100000263544.c.b
Mus_B	DUPLICATION
Mus_B	ANCESTRAL SPECIES																	ENSGT00940000154968.p #22
Mus_C	ANCESTRAL SPECIES																	ENSGT00940000154968.p #22
Steppe mouse	MODERN SPECIES	3173	Myct1 (ENSMSIG00000029269)	Syne1 (ENSMSIG00000029148)	Esr1 (ENSMSIG00000029132)	Ccdc170 (ENSMSIG00000029125)	Armt1 (ENSMSIG00000029112)	Rmnd1 (ENSMSIG00000029100)	Zbtb2 (ENSMSIG00000029096)	ENSMSIG00000029085	Akap12 (ENSMSIG00000029068)	ENSMSIG00000029049	Mthfd1l (ENSMSIG00000029009)	Plekhg1 (ENSMSIG00000028989)	ENSMSIG00000028971	ENSMSIG00000028966	H60c (ENSMSIG00000028958)	ENSMSIG00000028953 #22	ENSMSIG00000028950
Mus_B	ANCESTRAL SPECIES	22	ENSGT00950000182919.A	ENSGT00390000007284	ENSGT00730000111138	ENSGT00940000157719	ENSGT00940000164601	ENSGT00940000155625	ENSGT00940000160200	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00390000002200.a.b	ENSGT00940000162798	ENSGT00940000154635.a.g	ENSGT00860000135874	ENSGT00950000182992.a.b.b	ENSGT00940000154968.o ##22	ENSGT00940000154824.a	ENSGT00390000001688	ENSGT00940000157532	ENSGT00940000156113	ENSGT00390000006658.a.b	ENSGT00390000000521	ENSGT00940000153801.b	ENSGT00950000183108.b.a.b	ENSGT00390000007813	ENSGT00950000183131.b.a	ENSGT00530000068397	ENSGT00390000003680.b	ENSGT00390000012840	ENSGT00940000164066	ENSGT01100000263544.c.b
Mouse	MODERN SPECIES	13	Fbxl4 (ENSMUSG00000040410)	Faxc (ENSMUSG00000028246)	Coq3 (ENSMUSG00000028247)	Pnisr (ENSMUSG00000028248)	Usp45 (ENSMUSG00000040455)	Tstd3 (ENSMUSG00000028251)	Ccnc (ENSMUSG00000028252)	Prdm13 (ENSMUSG00000040478)	Nkain3 (ENSMUSG00000055761)	Ggh (ENSMUSG00000073987)	Ttpa (ENSMUSG00000073988)	Atp6v0d2 (ENSMUSG00000028238)	Slc7a13 (ENSMUSG00000041052)	Wwp1 (ENSMUSG00000041058)	Rmdn1 (ENSMUSG00000028229)	Cpne3 (ENSMUSG00000028228) ##22	Cngb3 (ENSMUSG00000056494)	Cnbd1 (ENSMUSG00000073991)	Mmp16 (ENSMUSG00000028226)	Ripk2 (ENSMUSG00000041135)	Osgin2 (ENSMUSG00000041153)	Nbn (ENSMUSG00000028224)	Decr1 (ENSMUSG00000028223)	Calb1 (ENSMUSG00000028222)	Tmem64 (ENSMUSG00000043252)	Necab1 (ENSMUSG00000040536)	Gm11837 (ENSMUSG00000086587)	Pip4p2 (ENSMUSG00000028221)	Otud6b (ENSMUSG00000040550)	Lrrc69 (ENSMUSG00000023151)	Slc26a7 (ENSMUSG00000040569)
Mus_C	ANCESTRAL SPECIES	2	ENSGT00950000182919.A	ENSGT00390000007284	ENSGT00730000111138	ENSGT00940000157719	ENSGT00940000164601	ENSGT00940000155625	ENSGT00940000160200	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00390000002200.a.b	ENSGT00940000162798	ENSGT00940000154635.a.g	ENSGT00860000135874	ENSGT00950000182992.a.b.b	ENSGT00940000154968.o ##22	ENSGT00940000154824.a	ENSGT00390000001688	ENSGT00940000157532	ENSGT00940000156113	ENSGT00390000006658.a.b	ENSGT00390000000521	ENSGT00940000153801.b	ENSGT00950000183108.b.a.b	ENSGT00390000007813	ENSGT00950000183131.b.a	ENSGT00530000068397	ENSGT00390000003680.b	ENSGT00390000012840	ENSGT00940000164066	ENSGT01100000263544.c.b
spretus	MODERN SPECIES	13	Faxc (MGP_SPRETEiJ_G0026798)	Coq3 (MGP_SPRETEiJ_G0026797)	Pnisr (MGP_SPRETEiJ_G0026796)	Usp45 (MGP_SPRETEiJ_G0026795)	Tstd3 (MGP_SPRETEiJ_G0026794)	Ccnc (MGP_SPRETEiJ_G0026793)	Prdm13 (MGP_SPRETEiJ_G0026792)	Nkain3 (MGP_SPRETEiJ_G0026791)	Ggh (MGP_SPRETEiJ_G0026790)	Ttpa (MGP_SPRETEiJ_G0026789)	Atp6v0d2 (MGP_SPRETEiJ_G0026788)	Slc7a13 (MGP_SPRETEiJ_G0026787)	Wwp1 (MGP_SPRETEiJ_G0026786)	MGP_SPRETEiJ_G0026785	Rmdn1 (MGP_SPRETEiJ_G0026784)	Cpne3 (MGP_SPRETEiJ_G0026783) ##22	Cngb3 (MGP_SPRETEiJ_G0026782)	MGP_SPRETEiJ_G0026781	Mmp16 (MGP_SPRETEiJ_G0026780)	Ripk2 (MGP_SPRETEiJ_G0026779)	Osgin2 (MGP_SPRETEiJ_G0026778)	Nbn (MGP_SPRETEiJ_G0026777)	Decr1 (MGP_SPRETEiJ_G0026776)	Calb1 (MGP_SPRETEiJ_G0026775)	Tmem64 (MGP_SPRETEiJ_G0026774)	Necab1 (MGP_SPRETEiJ_G0026773)	Pip4p2 (MGP_SPRETEiJ_G0026772)	MGP_SPRETEiJ_G0026771	Lrrc69 (MGP_SPRETEiJ_G0026770)	Slc26a7 (MGP_SPRETEiJ_G0026769)	Runx1t1 (MGP_SPRETEiJ_G0026768)
Steppe mouse	MODERN SPECIES	2828												Atp6v0d2 (ENSMSIG00000026754)	Slc7a13 (ENSMSIG00000026752)	Wwp1 (ENSMSIG00000026696)	Rmdn1 (ENSMSIG00000026671)	Cpne3 (ENSMSIG00000026648) ##22	Cngb3 (ENSMSIG00000026600)	ENSMSIG00000026593	ENSMSIG00000026587
Ryukyu mouse	MODERN SPECIES	13	Faxc (MGP_CAROLIEiJ_G0025849)	Coq3 (MGP_CAROLIEiJ_G0025848)	Pnisr (MGP_CAROLIEiJ_G0025847)	Usp45 (MGP_CAROLIEiJ_G0025846)	Tstd3 (MGP_CAROLIEiJ_G0025845)	Ccnc (MGP_CAROLIEiJ_G0025844)	Prdm13 (MGP_CAROLIEiJ_G0025843)	Nkain3 (MGP_CAROLIEiJ_G0025842)	Ggh (MGP_CAROLIEiJ_G0025841)	Ttpa (MGP_CAROLIEiJ_G0025840)	Atp6v0d2 (MGP_CAROLIEiJ_G0025839)	Slc7a13 (MGP_CAROLIEiJ_G0025838)	Wwp1 (MGP_CAROLIEiJ_G0025837)	MGP_CAROLIEiJ_G0025836	Rmdn1 (MGP_CAROLIEiJ_G0025835)	Cpne3 (MGP_CAROLIEiJ_G0025834) #22	Cngb3 (MGP_CAROLIEiJ_G0025833)	MGP_CAROLIEiJ_G0025832	Mmp16 (MGP_CAROLIEiJ_G0025831)	Ripk2 (MGP_CAROLIEiJ_G0025830)	Osgin2 (MGP_CAROLIEiJ_G0025829)	Nbn (MGP_CAROLIEiJ_G0025828)	Decr1 (MGP_CAROLIEiJ_G0025827)	Calb1 (MGP_CAROLIEiJ_G0025826)	Tmem64 (MGP_CAROLIEiJ_G0025825)	Necab1 (MGP_CAROLIEiJ_G0025824)	Pip4p2 (MGP_CAROLIEiJ_G0025823)	Otud6b (MGP_CAROLIEiJ_G0025822)	Lrrc69 (MGP_CAROLIEiJ_G0025821)	Slc26a7 (MGP_CAROLIEiJ_G0025820)	Runx1t1 (MGP_CAROLIEiJ_G0025819)
Shrew mouse	MODERN SPECIES	14	Faxc (MGP_PahariEiJ_G0023972)	Coq3 (MGP_PahariEiJ_G0023971)	Pnisr (MGP_PahariEiJ_G0023970)	Usp45 (MGP_PahariEiJ_G0023969)	Tstd3 (MGP_PahariEiJ_G0023968)	Ccnc (MGP_PahariEiJ_G0023967)	Prdm13 (MGP_PahariEiJ_G0023966)	Nkain3 (MGP_PahariEiJ_G0023965)	Ggh (MGP_PahariEiJ_G0023964)	Ttpa (MGP_PahariEiJ_G0023963)	Atp6v0d2 (MGP_PahariEiJ_G0023962)	Slc7a13 (MGP_PahariEiJ_G0023961)	Wwp1 (MGP_PahariEiJ_G0023960)	MGP_PahariEiJ_G0023959	Rmdn1 (MGP_PahariEiJ_G0023958)	Cpne3 (MGP_PahariEiJ_G0023957) #22	Cngb3 (MGP_PahariEiJ_G0023956)	MGP_PahariEiJ_G0023955	Mmp16 (MGP_PahariEiJ_G0023954)	Ripk2 (MGP_PahariEiJ_G0023953)	Osgin2 (MGP_PahariEiJ_G0023952)	Nbn (MGP_PahariEiJ_G0023951)	Decr1 (MGP_PahariEiJ_G0023950)	Calb1 (MGP_PahariEiJ_G0023949)	Tmem64 (MGP_PahariEiJ_G0023948)	Necab1 (MGP_PahariEiJ_G0023947)	Pip4p2 (MGP_PahariEiJ_G0023946)	Otud6b (MGP_PahariEiJ_G0023945)	Lrrc69 (MGP_PahariEiJ_G0023944)	Slc26a7 (MGP_PahariEiJ_G0023943)	Runx1t1 (MGP_PahariEiJ_G0023942)
Rat	MODERN SPECIES	15	Coq3 (ENSRNOG00000009974)	Pnisr (ENSRNOG00000008782)	Usp45 (ENSRNOG00000008688)	Tstd3 (ENSRNOG00000028185)	Ccnc (ENSRNOG00000007719)	Prdm13 (ENSRNOG00000007683)	Nkain3 (ENSRNOG00000013085)	Ggh (ENSRNOG00000007351)	Ttpa (ENSRNOG00000007139)	ENSRNOG00000068070	Atp6v0d2 (ENSRNOG00000006926)	ENSRNOG00000063190	Slc7a13 (ENSRNOG00000024903)	Wwp1 (ENSRNOG00000006328)	Rmdn1 (ENSRNOG00000025145)	Cpne3 (ENSRNOG00000006298) #22	Cngb3 (ENSRNOG00000006084)	Cnbd1 (ENSRNOG00000056330)	Mmp16 (ENSRNOG00000005708)	Ripk2 (ENSRNOG00000009389)	ENSRNOG00000067103	Osgin2 (ENSRNOG00000009358)	Nbn (ENSRNOG00000008580)	Decr1 (ENSRNOG00000008236)	Calb1 (ENSRNOG00000007456)	Tmem64 (ENSRNOG00000007426)	Necab1 (ENSRNOG00000066027)	Necab1 (ENSRNOG00000007256)	Pip4p2 (ENSRNOG00000006697)	Otud6b (ENSRNOG00000006636)	Lrrc69 (ENSRNOG00000006498)