Hystricomorpha	ANCESTRAL SPECIES	34	ENSGT00390000013995.b.a #7	ENSGT00390000007605 #8	ENSGT00940000158065 #9	ENSGT00940000160975 #10	ENSGT00950000183062.a.a.a #11	ENSGT00940000160282 #12	ENSGT00940000160080 #13	ENSGT00940000160606 #14	ENSGT00940000155198.C #15	ENSGT00940000160890 #16	ENSGT00390000009678 #17	ENSGT00390000016404 #18	ENSGT00940000157154.d #19	ENSGT00940000162663 #20	ENSGT00390000008983.a #21	ENSGT00940000155071.E #22	ENSGT00940000158384 #23	ENSGT00940000154861 #24	ENSGT00940000157717 #25	ENSGT01030000234648.a.a.d #26	ENSGT00940000154607.b.a.n #27	ENSGT00940000162395 #28	ENSGT01030000234626.C.i.b #29	ENSGT00390000006098 #30	ENSGT00940000158392 #31	ENSGT00940000160253 #32	ENSGT01040000240451.a.b.b.d #33	ENSGT00940000156503 #34	ENSGT00730000111139 #35	ENSGT00530000063564.a #36	ENSGT00800000124177 #37
Hystricomorpha_a	ANCESTRAL SPECIES	45	ENSGT00390000013995.b.a #7	ENSGT00390000007605 #8	ENSGT00940000158065 #9	ENSGT00940000160975 #10	ENSGT00950000183062.a.a.a #11	ENSGT00940000160282 #12	ENSGT00940000160080 #13	ENSGT00940000160606 #14	ENSGT00940000155198.C #15	ENSGT00940000160890 #16	ENSGT00390000009678 #17	ENSGT00390000016404 #18	ENSGT00940000157154.d #19	ENSGT00940000162663 #20	ENSGT00390000008983.a #21	ENSGT00940000155071.E #22	ENSGT00940000158384 #23	ENSGT00940000154861 #24	ENSGT00940000157717 #25	ENSGT01030000234648.a.a.d #26	ENSGT00940000154607.b.a.n #27	ENSGT00940000162395 #28	ENSGT01030000234626.C.i.b #29	ENSGT00390000006098 #30	ENSGT00940000158392 #31	ENSGT00940000160253 #32	ENSGT01040000240451.a.b.b.d #33	ENSGT00940000156503 #34	ENSGT00730000111139 #35	ENSGT00530000063564.a #36	ENSGT00800000124177 #37
Hystricomorpha_b	ANCESTRAL SPECIES	42	ENSGT00390000013995.b.a #7	ENSGT00390000007605 #8	ENSGT00940000158065 #9	ENSGT00940000160975 #10	ENSGT00950000183062.a.a.a #11	ENSGT00940000160282 #12	ENSGT00940000160080 #13	ENSGT00940000160606 #14	ENSGT00940000155198.C #15	ENSGT00940000160890 #16	ENSGT00390000009678 #17	ENSGT00390000016404 #18	ENSGT00940000157154.d #19	ENSGT00940000162663 #20	ENSGT00390000008983.a #21	ENSGT00940000155071.E #22	ENSGT00940000158384 #23	ENSGT00940000154861 #24	ENSGT00940000157717 #25	ENSGT01030000234648.a.a.d #26	ENSGT00940000154607.b.a.n #27	ENSGT00940000162395 #28	ENSGT01030000234626.C.i.b #29	ENSGT00390000006098 #30	ENSGT00940000158392 #31	ENSGT00940000160253 #32	ENSGT01040000240451.a.b.b.d #33	ENSGT00940000156503 #34	ENSGT00730000111139 #35	ENSGT00530000063564.a #36	ENSGT00800000124177 #37
Long-tailed chinchilla	MODERN SPECIES	128	RYBP (ENSCLAG00000006008) #7	SHQ1 (ENSCLAG00000004206) #8	GXYLT2 (ENSCLAG00000003908) #9	PPP4R2 (ENSCLAG00000003231) #10	PDZRN3 (ENSCLAG00000010964) #11	CNTN3 (ENSCLAG00000009614) #12	CHL1 (ENSCLAG00000006459) #13	CNTN6 (ENSCLAG00000008602) #14	CNTN4 (ENSCLAG00000006463) #15	IL5RA (ENSCLAG00000005656) #16	TRNT1 (ENSCLAG00000005186) #17	CRBN (ENSCLAG00000004930) #18	LRRN1 (ENSCLAG00000004896) #19	ENSCLAG00000005640 #20	SUMF1 (ENSCLAG00000004509) #21	ITPR1 (ENSCLAG00000009445) #22	BHLHE40 (ENSCLAG00000003841) #23	ARL8B (ENSCLAG00000003184) #24	EDEM1 (ENSCLAG00000004922) #25	GRM7 (ENSCLAG00000004216) #26	ENSCLAG00000003666 #27	SLC22A14 (ENSCLAG00000003320) #28	ENSCLAG00000003124 #29	DLEC1 (ENSCLAG00000006229) #30	PLCD1 (ENSCLAG00000005079) #31	VILL (ENSCLAG00000005376) #32	CTDSPL (ENSCLAG00000004547) #33	ITGA9 (ENSCLAG00000004058) #34	GOLGA4 (ENSCLAG00000005913) #35	LRRFIP2 (ENSCLAG00000003180) #36	MLH1 (ENSCLAG00000004334) #37
Degu	MODERN SPECIES	71	CNTN3 (ENSODEG00000006512) #12	ENSODEG00000019392	CHL1 (ENSODEG00000010169) #13	ENSODEG00000019383	ENSODEG00000007284	CNTN6 (ENSODEG00000006499) #14	CNTN4 (ENSODEG00000007155) #15	IL5RA (ENSODEG00000006715) #16	TRNT1 (ENSODEG00000007597) #17	ENSODEG00000008720 #18	ENSODEG00000006737	LRRN1 (ENSODEG00000007430) #19	ENSODEG00000007585	ENSODEG00000006593 #20	SUMF1 (ENSODEG00000007677) #21	ITPR1 (ENSODEG00000007250) #22	ENSODEG00000008843 #23	ARL8B (ENSODEG00000009293) #24	EDEM1 (ENSODEG00000009933) #25	ENSODEG00000019586
Guinea pig	MODERN SPECIES	16	SHQ1 (ENSCPOG00000011443) #8	GXYLT2 (ENSCPOG00000000442) #9	ENSCPOG00000030150	PPP4R2 (ENSCPOG00000036245) #10	PDZRN3 (ENSCPOG00000030488) #11	CNTN3 (ENSCPOG00000003218) #12	CHL1 (ENSCPOG00000014986) #13	CNTN6 (ENSCPOG00000001124) #14	CNTN4 (ENSCPOG00000026863) #15	Il5ra (ENSCPOG00000007845) #16	TRNT1 (ENSCPOG00000007849) #17	CRBN (ENSCPOG00000007851) #18	LRRN1 (ENSCPOG00000006583) #19	ENSCPOG00000019854 #20	SUMF1 (ENSCPOG00000014854) #21	ITPR1 (ENSCPOG00000005053) #22	BHLHE40 (ENSCPOG00000004014) #23	ENSCPOG00000002434	ENSCPOG00000020709	ARL8B (ENSCPOG00000031098) #24	EDEM1 (ENSCPOG00000031536) #25	GRM7 (ENSCPOG00000001886) #26	DLEC1 (ENSCPOG00000008859) #30	PLCD1 (ENSCPOG00000000596) #31	VILL (ENSCPOG00000029985) #32	CTDSPL (ENSCPOG00000000592) #33	ITGA9 (ENSCPOG00000014650) #34	GOLGA4 (ENSCPOG00000008525) #35	LRRFIP2 (ENSCPOG00000038703) #36	MLH1 (ENSCPOG00000003928) #37	EPM2AIP1 (ENSCPOG00000022371)
Naked mole-rat female	MODERN SPECIES	28	ENSHGLG00000003660	ENSHGLG00000032578	ENSHGLG00000002080 #12	ENSHGLG00000042664	ENSHGLG00000003621 #13	CNTN6 (ENSHGLG00000003847) #14	ENSHGLG00000038160	CNTN4 (ENSHGLG00000006279) #15	IL5RA (ENSHGLG00000003211) #16	ENSHGLG00000003649 #17	CRBN (ENSHGLG00000003957) #18	ENSHGLG00000002667	LRRN1 (ENSHGLG00000002701) #19	ENSHGLG00000049868 #20	ENSHGLG00000003230 #21	ENSHGLG00000004549 #22	ENSHGLG00000003679 #23	ENSHGLG00000033324	ENSHGLG00000048183	ENSHGLG00000042322	ENSHGLG00000039470	ENSHGLG00000002002	ENSHGLG00000001846 #24	ENSHGLG00000002073 #25	ENSHGLG00000050895	ENSHGLG00000044283	ENSHGLG00000042623	ENSHGLG00000046070	ENSHGLG00000040264	ENSHGLG00000002591	ENSHGLG00000032624