Cyprininae	ANCESTRAL SPECIES	15	ENSGT00940000162414.l.b.b.a	ENSGT00390000001577.e	ENSGT00530000063669.a.c #7	ENSGT00390000013015.b #8	ENSGT00940000156077.g.b.j #11	ENSGT00940000160078.c #12	ENSGT00940000164462.a #13	ENSGT00940000155155.l #14	ENSGT00670000098059.d.a #16	ENSGT00390000018294.r #15	ENSGT00390000015355.fb.a #17	ENSGT00390000006234.u #18	ENSGT00390000015224.d.i.b #19	ENSGT00730000111066.b #20	ENSGT00940000155586.A.f.b.b #21	ENSGT00940000155527.j.b.a.a #22	ENSGT00990000203806.a	ENSGT00940000156077.g.b.i ##11	ENSGT00940000160078.d ##12	ENSGT00940000164462.b ##13	ENSGT00940000155155.k ##14	ENSGT00670000098059.d.b ##16	ENSGT00390000018294.q ##15	ENSGT00390000015355.fb.b ##17	ENSGT00390000006234.v ##18	ENSGT00390000015224.d.i.a ##19	ENSGT00730000111066.a ##20	ENSGT00940000155586.A.f.b.a ##21	ENSGT00940000155527.j.b.a.b ##22	ENSGT00390000011749.n ##24	ENSGT00410000029064.c #23
Cyprininae_a	ANCESTRAL SPECIES	48	ENSGT00940000162414.l.b.b.a	ENSGT00390000001577.e	ENSGT00530000063669.a.c #7	ENSGT00390000013015.b #8	ENSGT00940000156077.g.b.j #11	ENSGT00940000160078.c #12	ENSGT00940000164462.a #13	ENSGT00940000155155.l #14	ENSGT00670000098059.d.a #16	ENSGT00390000018294.r #15	ENSGT00390000015355.fb.a #17	ENSGT00390000006234.u #18	ENSGT00390000015224.d.i.b #19	ENSGT00730000111066.b #20	ENSGT00940000155586.A.f.b.b #21	ENSGT00940000155527.j.b.a.a #22	ENSGT00990000203806.a	ENSGT00410000029064.c.a #23	ENSGT00390000011749.m #24	ENSGT00390000000470.m.a.a #25	ENSGT00390000005639.a.a.n.a #26	ENSGT00390000010628.a.a #27	ENSGT00530000063586.b.c.a.c #28	ENSGT00940000154372.a.a.b.d #29	ENSGT00940000154372.a.b.a.e #30	ENSGT00940000155988.c.e #31	ENSGT00940000157306.bb #32	ENSGT00940000158708.a.c #33	ENSGT00940000158062.f.a.b #34	ENSGT00940000156892.b.a #35	ENSGT00940000154617.A.a.a.g #36
Common carp reference	MODERN SPECIES	27	fam184b (ENSCCRG00000021314) #7	ENSCCRG00000057613 #8	ENSCCRG00000054891 #9	ENSCCRG00000077705 #10	CHRNA9 (ENSCCRG00000022278) #11	rhoh (ENSCCRG00000080203) #12	n4bp2 (ENSCCRG00000022271) #13	pds5a (ENSCCRG00000021444) #14	smim14 (ENSCCRG00000073429) #15	ube2kb (ENSCCRG00000073522) #16	ugdh (ENSCCRG00000051328) #17	lias (ENSCCRG00000078037) #18	rpl9 (ENSCCRG00000051304) #19	rfc1 (ENSCCRG00000051229) #20	ENSCCRG00000006500 #21	ENSCCRG00000025312 #22	smim18 (ENSCCRG00000064068) #23	gtf2e2 (ENSCCRG00000046595) #24	QDPR (ENSCCRG00000079710) #25	ldb2b (ENSCCRG00000072395) #26	tapt1b (ENSCCRG00000008631) #27	prom1b (ENSCCRG00000008593) #28	fgfbp2b (ENSCCRG00000025013) #29	ENSCCRG00000043514 #30	anxa5b (ENSCCRG00000015853) #31	uchl1 (ENSCCRG00000076852) #32	ENSCCRG00000044241 #33	chrna6 (ENSCCRG00000044235) #34	chrnb3a (ENSCCRG00000023089) #35	ENSCCRG00000023112 #36	ENSCCRG00000023148 #37
Golden-line barbel	MODERN SPECIES	345					CHRNA9 (ENSSGRG00000027586) #11	rhoh (ENSSGRG00000027585) #12	n4bp2 (ENSSGRG00000027583) #13	pds5a (ENSSGRG00000022515) #14	ube2kb (ENSSGRG00000022408) #16	smim14 (ENSSGRG00000022406) #15	ENSSGRG00000022405 ##17	rpl9 (ENSSGRG00000022403) ##19	lias (ENSSGRG00000022029) #18	rfc1 (ENSSGRG00000021184) #20	ENSSGRG00000021177	ENSSGRG00000021046 #22	ENSSGRG00000021045	smim18 (ENSSGRG00000021044) #23	gtf2e2 (ENSSGRG00000021002) #24	QDPR (ENSSGRG00000021001) #25	ldb2b (ENSSGRG00000021000) #26	tapt1b (ENSSGRG00000020999) #27	prom1b (ENSSGRG00000020992) #28	zmynd10 (ENSSGRG00000020990)	ENSSGRG00000020989 #30	anxa5b (ENSSGRG00000020348) #31	uchl1 (ENSSGRG00000020340) #32	ENSSGRG00000020270 #33	chrna6 (ENSSGRG00000020268) ##34	chrnb3a (ENSSGRG00000020267) #35	ENSSGRG00000020094 #36
Goldfish	MODERN SPECIES	18	nsun3 (ENSCARG00000067299)	ENSCARG00000067295	ENSCARG00000067292	ENSCARG00000067276	CHRNA9 (ENSCARG00000067245) #11	rhoh (ENSCARG00000067231) #12	n4bp2 (ENSCARG00000067215) #13	pds5a (ENSCARG00000063506) #14	ube2kb (ENSCARG00000063152) #16	smim14 (ENSCARG00000063129) #15	ugdh (ENSCARG00000063108) #17	lias (ENSCARG00000063079) #18	rpl9 (ENSCARG00000063053) #19	rfc1 (ENSCARG00000062345) #20	ENSCARG00000062117 #21	ADGRL3 (ENSCARG00000054019) #22	SMIM18 (ENSCARG00000053785) ##23	gtf2e2 (ENSCARG00000053751) #24	QDPR (ENSCARG00000053337) ##25	ldb2b (ENSCARG00000053284) #26	tapt1b (ENSCARG00000052960) #27	prom1b (ENSCARG00000052536) #28	fgfbp2b (ENSCARG00000052451) #29	ENSCARG00000052434 #30	anxa5b (ENSCARG00000050409) #31	uchl1 (ENSCARG00000050215) #32	ENSCARG00000050181 #33	chrna6 (ENSCARG00000050107) #34	chrnb3a (ENSCARG00000050064) #35	ENSCARG00000049956 #36	DNAH6 (ENSCARG00000048724) #37