Osteoglossocephalai	ANCESTRAL SPECIES	228						ENSGT00800000124172.i #29	ENSGT00940000160640 #28	ENSGT00510000047770.c.b #27	ENSGT00940000156823.e #26	ENSGT00390000017010 #25	ENSGT00940000168167	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.A	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00940000154658.a #23	ENSGT00950000182886.a.b	ENSGT00390000017890.b.b #30	ENSGT00940000159617	ENSGT00390000011749	ENSGT00410000029064	ENSGT00390000001491.a	ENSGT00390000010434.a	ENSGT00940000159570.a	ENSGT00950000183001.b.b.a	ENSGT00940000156391.d
Clupeocephala	ANCESTRAL SPECIES	364							ENSGT00940000160640 #28	ENSGT00510000047770.c.b #27	ENSGT00940000156823.e #26	ENSGT00390000017010 #25	ENSGT00940000168167	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.A	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00990000203806	ENSGT00940000154658.a #23	ENSGT00950000182886.a.b
Euteleosteomorpha	ANCESTRAL SPECIES	191	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000153617.C.e.a	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00990000203806	ENSGT00940000154658.a #23	ENSGT00950000182886.a.b
Acanthomorphata	ANCESTRAL SPECIES	174	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.A	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00990000203806	ENSGT00940000154658.a #23
Euacanthomorphacea	ANCESTRAL SPECIES	17	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.A	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00990000203806	ENSGT00940000154658.a #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26	ENSGT00510000047770.c.b #27	ENSGT00940000160640 #28	ENSGT00800000124172.i #29	ENSGT00940000159617	ENSGT00390000017890.b.b #30	ENSGT00940000157146.a.a #31	ENSGT00940000161036.A.e	ENSGT00530000063854 #32	ENSGT01070000253822.D.b #33	ENSGT00980000198603.A	ENSGT00540000073610.B #34
Percomorphaceae	ANCESTRAL SPECIES	18	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.A	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00990000203806	ENSGT00940000154658.a #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26	ENSGT00510000047770.c.b #27	ENSGT00940000160640 #28	ENSGT00800000124172.i #29	ENSGT00940000159617	ENSGT00390000017890.b.b #30	ENSGT00940000157146.a.a #31	ENSGT00940000161036.A.e	ENSGT00530000063854 #32	ENSGT01070000253822.D.b #33	ENSGT00980000198603.A	ENSGT00540000073610.B #34
Percomorphaceae_B	ANCESTRAL SPECIES	19	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.A	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00980000202414	ENSGT00940000154658.a #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26	ENSGT00510000047770.c.b #27	ENSGT00940000160640 #28	ENSGT00800000124172.i #29	ENSGT00940000159617	ENSGT00390000017890.b.b #30	ENSGT00940000157146.a.a #31	ENSGT00940000161036.A.e	ENSGT00530000063854 #32	ENSGT01070000253822.D.b #33	ENSGT00980000198603.A	ENSGT00540000073610.B #34
Ovalentaria	ANCESTRAL SPECIES	20	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.A	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00990000203806	ENSGT00940000154658.a #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26	ENSGT00510000047770.c.b #27	ENSGT00940000160640 #28	ENSGT00800000124172.i #29	ENSGT00940000159617	ENSGT00390000017890.b.b #30	ENSGT00940000157146.a.a #31	ENSGT00940000161036.A.e	ENSGT00530000063854 #32	ENSGT01070000253822.D.b #33	ENSGT00980000198603.A	ENSGT00540000073610.B #34
Ovalentaria_B	ANCESTRAL SPECIES	19	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.A	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00990000203806	ENSGT00940000154658.a #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26	ENSGT00510000047770.c.b #27	ENSGT00940000160640 #28	ENSGT00800000124172.i #29	ENSGT00940000159617	ENSGT00390000017890.b.b #30	ENSGT00940000157146.a.a #31	ENSGT00940000161036.A.e	ENSGT00530000063854 #32	ENSGT01070000253822.D.b #33	ENSGT00540000073610.B #34	ENSGT00940000156393.a.a #35
Cichlidae	ANCESTRAL SPECIES	20	ENSGT00940000165054.C.f	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00990000203806	ENSGT00940000154658.a #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26	ENSGT00510000047770.c.b #27	ENSGT00940000160640 #28	ENSGT00800000124172.i #29	ENSGT00940000159617	ENSGT00390000017890.b.b #30	ENSGT00940000157146.a.a #31	ENSGT00940000161036.A.e	ENSGT00530000063854 #32	ENSGT01070000253822.D.b #33	ENSGT00540000073610.B #34	ENSGT00940000156393.a.a #35
Pseudocrenilabrinae	ANCESTRAL SPECIES	18	ENSGT00940000165054.C.f.d	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00990000203806	ENSGT00940000154658.a #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26	ENSGT00510000047770.c.b #27	ENSGT00940000160640 #28	ENSGT00800000124172.i #29	ENSGT00940000159617	ENSGT00390000017890.b.b #30	ENSGT00940000157146.a.a #31	ENSGT00940000161036.A.e	ENSGT00530000063854 #32	ENSGT01070000253822.D.b #33	ENSGT00540000073610.B #34	ENSGT00940000156393.a.a #35
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	23	ENSGT00940000165054.C.f.d	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00990000203806	ENSGT00940000154658.a #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26	ENSGT00510000047770.c.b #27	ENSGT00940000160640 #28	ENSGT00800000124172.i #29	ENSGT00940000159617	ENSGT00390000017890.b.b #30	ENSGT00940000157146.a.a #31	ENSGT00940000161036.A.e	ENSGT00530000063854 #32	ENSGT01070000253822.D.b #33	ENSGT00540000073610.B #34	ENSGT00940000156393.a.a #35
Lyretail cichlid	MODERN SPECIES	446																ADGRL3 (ENSNBRG00000009989) #22	ENSNBRG00000010023 #23	ENSNBRG00000010113 #24	CAAP1 (ENSNBRG00000010153) #25	elavl2 (ENSNBRG00000010284) #26	ENSNBRG00000010299 #27	DMRTA1 (ENSNBRG00000010312) #28	FABP2 (ENSNBRG00000010321) #29	ENSNBRG00000010333 #30	SGCZ (ENSNBRG00000010366) #31	mfsd8 (ENSNBRG00000010425) #32	ENSNBRG00000010487 #33	ENSNBRG00000010513 #34	ZFP91 (ENSNBRG00000010534) #35
Haplochromini	ANCESTRAL SPECIES	31	ENSGT00940000165054.C.f.d	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00990000203806	ENSGT00940000154658.a #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26	ENSGT00510000047770.c.b #27	ENSGT00940000160640 #28	ENSGT00800000124172.i #29	ENSGT00940000159617	ENSGT00390000017890.b.b #30	ENSGT00940000157146.a.a #31	ENSGT00940000161036.A.e	ENSGT00530000063854 #32	ENSGT01070000253822.D.b #33	ENSGT00540000073610.B #34	ENSGT00940000156393.a.a #35
Burton s mouthbrooder	MODERN SPECIES	393													TYRP1 (ENSHBUG00000006209)	LURAP1L (ENSHBUG00000001020)	MPDZ (ENSHBUG00000006186)	ADGRL3 (ENSHBUG00000006141) #22	ENSHBUG00000006091	ENSHBUG00000006066 #23	CAAP1 (ENSHBUG00000005978) #25	elavl2 (ENSHBUG00000005968) #26	ENSHBUG00000005942 #27	DMRTA1 (ENSHBUG00000000928) #28	FABP2 (ENSHBUG00000005917) #29	RBPMS (ENSHBUG00000005888)	ENSHBUG00000005870 #30	ENSHBUG00000005832 ##31
Haplochromini_A	ANCESTRAL SPECIES	35	ENSGT00940000165054.C.f.d	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00990000203806	ENSGT00940000154658.a #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26	ENSGT00510000047770.c.b #27	ENSGT00940000160640 #28	ENSGT00800000124172.i #29	ENSGT00940000159617	ENSGT00390000017890.b.b #30	ENSGT00940000157146.a.a #31	ENSGT00940000161036.A.e	ENSGT00530000063854 #32	ENSGT01070000253822.D.b #33	ENSGT00540000073610.B #34	ENSGT00940000156393.a.a #35
P. nyererei	MODERN SPECIES	421	ENSPNYG00000006753	ccdc149a (ENSPNYG00000006765)	ENSPNYG00000006790	PPARGC1A (ENSPNYG00000006846)	gba3 (ENSPNYG00000006891)	ADGRA3 (ENSPNYG00000006906)	KCNIP4 (ENSPNYG00000006925)	sec24d (ENSPNYG00000006950)	ENSPNYG00000006966	myoz2a (ENSPNYG00000006977)	ENSPNYG00000007004	PTPRD (ENSPNYG00000007040)	TYRP1 (ENSPNYG00000007139)	LURAP1L (ENSPNYG00000007165)	MPDZ (ENSPNYG00000007185)	ADGRL3 (ENSPNYG00000007344) #22
Haplochromini_B	ANCESTRAL SPECIES	25	ENSGT00940000165054.C.f.c.a.a.a	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00990000203806	ENSGT00940000154658.a #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26	ENSGT00510000047770.c.b #27	ENSGT00940000160640 #28	ENSGT00800000124172.i #29	ENSGT00940000159617	ENSGT00390000017890.b.b #30	ENSGT00940000157146.a.a #31	ENSGT00940000161036.A.e	ENSGT00530000063854 #32	ENSGT01070000253822.D.b #33	ENSGT00540000073610.B #34	ENSGT00940000156393.a.a #35
Zebra mbuna	MODERN SPECIES	1106	ENSMZEG00005001757	PPARGC1A (ENSMZEG00005001739)	ENSMZEG00005001709	gba3 (ENSMZEG00005001698)	ADGRA3 (ENSMZEG00005001689)	KCNIP4 (ENSMZEG00005001667)	sec24d (ENSMZEG00005001595)	ENSMZEG00005001547	myoz2a (ENSMZEG00005001520)	USP53 (ENSMZEG00005001507)	PTPRD (ENSMZEG00005001243)	ENSMZEG00005001208	TYRP1 (ENSMZEG00005001187)	LURAP1L (ENSMZEG00005001183)	MPDZ (ENSMZEG00005001094)	ADGRL3 (ENSMZEG00005001028) #22	ENSMZEG00005000817 #23	CAAP1 (ENSMZEG00005000801) #25	elavl2 (ENSMZEG00005000778) #26	ENSMZEG00005000772 #27	DMRTA1 (ENSMZEG00005000752) #28	FABP2 (ENSMZEG00005000743) #29	RBPMS (ENSMZEG00005000698)	ENSMZEG00005000647 #30	SGCZ (ENSMZEG00005000612) #31	ENSMZEG00005000585	mfsd8 (ENSMZEG00005000569) #32	ENSMZEG00005000528 #33	ENSMZEG00005000495 #34	ENSMZEG00005000478 #35	cldnd1a (ENSMZEG00005000455)
Eastern happy	MODERN SPECIES	15	ENSACLG00000000737	ENSACLG00000000749	ENSACLG00000000765	PPARGC1A (ENSACLG00000001002)	gba3 (ENSACLG00000001126)	ADGRA3 (ENSACLG00000001140)	KCNIP4 (ENSACLG00000001315)	sec24d (ENSACLG00000001362)	ENSACLG00000001403	myoz2a (ENSACLG00000001413)	USP53 (ENSACLG00000001439)	PTPRD (ENSACLG00000001550)	TYRP1 (ENSACLG00000001942)	LURAP1L (ENSACLG00000001998)	MPDZ (ENSACLG00000002011)	ADGRL3 (ENSACLG00000002240) #22	ENSACLG00000002311	ENSACLG00000002328 #23	CAAP1 (ENSACLG00000002613) #25	elavl2 (ENSACLG00000002715) #26	ENSACLG00000002778 #27	DMRTA1 (ENSACLG00000002823) #28	FABP2 (ENSACLG00000002847) #29	RBPMS (ENSACLG00000002926)	ENSACLG00000002952 #30	SGCZ (ENSACLG00000003007) #31	ENSACLG00000003019	mfsd8 (ENSACLG00000003047) #32	ENSACLG00000003069 #33	ENSACLG00000003117 #34	ENSACLG00000003125 #35
Nile tilapia	MODERN SPECIES	15	ENSONIG00000039847	ccdc149a (ENSONIG00000028055)	ENSONIG00000007642	PPARGC1A (ENSONIG00000007635)	gba3 (ENSONIG00000007634)	ADGRA3 (ENSONIG00000036115)	KCNIP4 (ENSONIG00000041474)	sec24d (ENSONIG00000007619)	SYNPO2 (ENSONIG00000032796)	myoz2a (ENSONIG00000007614)	USP53 (ENSONIG00000007612)	PTPRD (ENSONIG00000007588)	TYRP1 (ENSONIG00000007584)	LURAP1L (ENSONIG00000007582)	MPDZ (ENSONIG00000007574)	ADGRL3 (ENSONIG00000007571) #22	ENSONIG00000028332	ENSONIG00000007557 #23	ENSONIG00000030865 #25	ENSONIG00000033798	elavl2 (ENSONIG00000007552) #26	ENSONIG00000038581 #27	ENSONIG00000040635	ENSONIG00000027429	FABP2 (ENSONIG00000007548) #29	RBPMS (ENSONIG00000007546)	ENSONIG00000007544 #30	SGCZ (ENSONIG00000007542) #31	ENSONIG00000007538	mfsd8 (ENSONIG00000007537) #32	ENSONIG00000032206 ##33
Midas cichlid	MODERN SPECIES	793		ccdc149a (ENSACIG00000009651)	dhx15 (ENSACIG00000009701)	PPARGC1A (ENSACIG00000009732)	gba3 (ENSACIG00000009785)	ADGRA3 (ENSACIG00000009827)	KCNIP4 (ENSACIG00000009882)	sec24d (ENSACIG00000009914)	SYNPO2 (ENSACIG00000010161)	myoz2a (ENSACIG00000010197)	USP53 (ENSACIG00000010321)	PTPRD (ENSACIG00000010385)	TYRP1 (ENSACIG00000010444)	LURAP1L (ENSACIG00000010470)	MPDZ (ENSACIG00000010482)	ADGRL3 (ENSACIG00000010583) #22	ENSACIG00000010635 #23	CAAP1 (ENSACIG00000010733) #25	elavl2 (ENSACIG00000010855) #26	ENSACIG00000011339 #27	DMRTA1 (ENSACIG00000011367) #28	FABP2 (ENSACIG00000011389) #29	RBPMS (ENSACIG00000011395)	ENSACIG00000011410 #30	SGCZ (ENSACIG00000011434) #31	ENSACIG00000011477	mfsd8 (ENSACIG00000011553) #32	ENSACIG00000011583 #33	ENSACIG00000011601 #34	ZFP91 (ENSACIG00000011617) #35
Pomacentridae	ANCESTRAL SPECIES	28	ENSGT00940000157294.d	ENSGT00940000165054.C.f	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155527.j.a #22	ENSGT00990000203806	ENSGT00940000154658.a.e #23	ENSGT00940000154658.a.f #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26	ENSGT00510000047770.c.b #27	ENSGT00940000160640 #28	ENSGT00800000124172.i #29	ENSGT00940000159617	ENSGT00390000017890.b.b #30	ENSGT00940000157146.a.a #31	ENSGT00940000161036.A.e	ENSGT00530000063854 #32	ENSGT01070000253822.D.b #33	ENSGT00940000166038
Pomacentridae_A	ANCESTRAL SPECIES	22	ENSGT00940000165054.C.f.b	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00990000203806	ENSGT00940000154658.a.f #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26	ENSGT00510000047770.c.b #27	ENSGT00940000160640 #28	ENSGT00800000124172.i #29	ENSGT00940000159617	ENSGT00390000017890.b.b #30	ENSGT00940000157146.a.a #31	ENSGT00940000161036.A.e	ENSGT00530000063854 #32	ENSGT01070000253822.D.b #33	ENSGT01090000260059.a.b.b.b.a.d.a.b	ENSGT00940000166038
Amphiprion	ANCESTRAL SPECIES	96	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000162226.b	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00990000203806	ENSGT00940000154658.a.f #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26	ENSGT00510000047770.c.b #27	ENSGT00940000160640 #28	ENSGT00800000124172.i #29	ENSGT00940000159617	ENSGT00390000017890.b.b #30	ENSGT00940000157146.a.a #31	ENSGT00940000161036.A.e	ENSGT00530000063854 #32	ENSGT01070000253822.D.b #33	ENSGT01090000260059.a.b.b.b.a.d.a.b	ENSGT00940000166038
Orange clownfish	MODERN SPECIES	15	ENSAPEG00000022664	KCNIP4 (ENSAPEG00000022684)	sec24d (ENSAPEG00000022743)	ENSAPEG00000022778	myoz2a (ENSAPEG00000022815)	USP53 (ENSAPEG00000022822)	PTPRD (ENSAPEG00000022919)	TYRP1 (ENSAPEG00000023168)	LURAP1L (ENSAPEG00000023192)	ENSAPEG00000023197	ENSAPEG00000023207	ENSAPEG00000023222	ENSAPEG00000023231	ENSAPEG00000023237	ENSAPEG00000023255	ADGRL3 (ENSAPEG00000023284) #22	ENSAPEG00000023314	ENSAPEG00000023327	ENSAPEG00000023340	ENSAPEG00000023386 #23	CAAP1 (ENSAPEG00000023464) #25	elavl2 (ENSAPEG00000023474) #26	ENSAPEG00000023497 #27	DMRTA1 (ENSAPEG00000023525) #28	FABP2 (ENSAPEG00000023534) #29	RBPMS (ENSAPEG00000023543)	ENSAPEG00000023550 #30	SGCZ (ENSAPEG00000023566) #31	ENSAPEG00000023603	mfsd8 (ENSAPEG00000023620) #32	ENSAPEG00000023637 #33
Clown anemonefish	MODERN SPECIES	3582				ADGRA3 (ENSAOCG00000000992)	ENSAOCG00000014772	KCNIP4 (ENSAOCG00000014839)	sec24d (ENSAOCG00000014868)	ENSAOCG00000014874	myoz2a (ENSAOCG00000014887)	USP53 (ENSAOCG00000014900)	PTPRD (ENSAOCG00000015122)	TYRP1 (ENSAOCG00000015186)	LURAP1L (ENSAOCG00000015194)	MPDZ (ENSAOCG00000015306)	ENSAOCG00000015340	ADGRL3 (ENSAOCG00000015401) #22
Spiny chromis	MODERN SPECIES	1031																ADGRL3 (ENSAPOG00000015258) #22	ENSAPOG00000015279
Bicolor damselfish	MODERN SPECIES	1874																ENSSPAG00000012755 #22	ENSSPAG00000012738	ENSSPAG00000012730 #23
Atherinomorphae	ANCESTRAL SPECIES	22	ENSGT00940000165054.C.f	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00980000202414	ENSGT00940000154658.a #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26	ENSGT00510000047770.c.b #27	ENSGT00940000160640 #28	ENSGT00800000124172.i #29	ENSGT00940000159617	ENSGT00390000017890.b.b #30	ENSGT00940000157146.a.a #31	ENSGT00940000161036.A.e	ENSGT00530000063854 #32	ENSGT01070000253822.D.b #33	ENSGT00980000198603.A	ENSGT00540000073610.B #34
Oryzias	ANCESTRAL SPECIES	21	ENSGT00940000165054.C.f	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00980000202414	ENSGT00940000154658.a #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26	ENSGT00510000047770.c.b #27	ENSGT00940000160640 #28	ENSGT00800000124172.i #29	ENSGT00940000159617	ENSGT00390000017890.b.b #30	ENSGT00940000157146.a.a #31	ENSGT00940000159026	ENSGT00390000018729.b	ENSGT00390000007726.b	ENSGT01060000253413	ENSGT00390000002231.b
Oryzias_b	ANCESTRAL SPECIES	18	ENSGT00940000165054.C.f	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00940000154658.a #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26	ENSGT00510000047770.c.b #27	ENSGT00940000160640 #28	ENSGT00800000124172.i #29	ENSGT00940000159617	ENSGT00390000017890.b.b #30	ENSGT00940000157146.a.a #31	ENSGT00940000159026	ENSGT00390000018729.b	ENSGT00390000007726.b	ENSGT00940000163911.a.a.b.a.a.a.b.a.b	ENSGT00940000163911.a.a.b.a.a.a.b.a.a	ENSGT01040000240385.A.a.b.a
Indian medaka	MODERN SPECIES	19	ENSOMEG00000006152	ccdc149a (ENSOMEG00000006119)	ENSOMEG00000006075	PPARGC1A (ENSOMEG00000000670)	gba3 (ENSOMEG00000005946)	ADGRA3 (ENSOMEG00000005915)	KCNIP4 (ENSOMEG00000005776)	sec24d (ENSOMEG00000005678)	ENSOMEG00000005638	myoz2a (ENSOMEG00000005628)	ENSOMEG00000005608	PTPRD (ENSOMEG00000005568)	TYRP1 (ENSOMEG00000005449)	LURAP1L (ENSOMEG00000005431)	MPDZ (ENSOMEG00000005411)	ADGRL3 (ENSOMEG00000005355) #22	ENSOMEG00000005308 #23	CAAP1 (ENSOMEG00000005226) #25	elavl2 (ENSOMEG00000005178) #26	ENSOMEG00000005141 #27	ENSOMEG00000005083 #29	DMRTA1 (ENSOMEG00000005064) #28	RBPMS (ENSOMEG00000005044)	ENSOMEG00000004999 #30	SGCZ (ENSOMEG00000004970) #31	syt4 (ENSOMEG00000004955)	ENSOMEG00000004934	ENSOMEG00000004901	ENSOMEG00000004862	ENSOMEG00000004842	ENSOMEG00000004825
Javanese ricefish	MODERN SPECIES	9	ENSOJAG00000013236	ccdc149a (ENSOJAG00000013251)	ENSOJAG00000013382	PPARGC1A (ENSOJAG00000013648)	gba3 (ENSOJAG00000013665)	ADGRA3 (ENSOJAG00000013743)	KCNIP4 (ENSOJAG00000014582)	sec24d (ENSOJAG00000014803)	SYNPO2 (ENSOJAG00000017001)	myoz2a (ENSOJAG00000017040)	USP53 (ENSOJAG00000017053)	PTPRD (ENSOJAG00000017841)	ENSOJAG00000023091	TYRP1 (ENSOJAG00000023096)	LURAP1L (ENSOJAG00000023101)	ADGRL3 (ENSOJAG00000023481) #22	ENSOJAG00000023853 #23	ENSOJAG00000023915	CAAP1 (ENSOJAG00000023918) #25	elavl2 (ENSOJAG00000023923) #26	ENSOJAG00000023928 #27	DMRTA1 (ENSOJAG00000023929) #28	ENSOJAG00000023932 #29	RBPMS (ENSOJAG00000023935)	DCTN6 (ENSOJAG00000023939) #30	SGCZ (ENSOJAG00000023942) #31	syt4 (ENSOJAG00000023949)	ENSOJAG00000023952	ENSOJAG00000023959	ENSOJAG00000023963	ENSOJAG00000023968
Oryzias_a	ANCESTRAL SPECIES	27	ENSGT00940000165054.C.f	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00980000202414	ENSGT00940000154658.a.g #23	ENSGT00940000154658.a.h #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26	ENSGT00510000047770.c.b #27	ENSGT00940000160640 #28	ENSGT00800000124172.i #29	ENSGT00940000159617	ENSGT00390000017890.b.b #30	ENSGT00940000157146.a.a #31	ENSGT00940000159026	ENSGT00390000018729.b	ENSGT00390000007726.b	ENSGT00940000174504.B
Japanese Medaka HdrR	MODERN SPECIES	9	ENSORLG00000004819	PPARGC1A (ENSORLG00000004788)	gba3 (ENSORLG00000004780)	ADGRA3 (ENSORLG00000004767)	ENSORLG00000023209	KCNIP4 (ENSORLG00000004748)	sec24d (ENSORLG00000004729)	SYNPO2 (ENSORLG00000028437)	myoz2a (ENSORLG00000025044)	USP53 (ENSORLG00000004686)	ENSORLG00000022754	PTPRD (ENSORLG00000004650)	TYRP1 (ENSORLG00000004326)	LURAP1L (ENSORLG00000028081)	MPDZ (ENSORLG00000004290)	ADGRL3 (ENSORLG00000004254) #22	ENSORLG00000023983	ENSORLG00000028831 #23	ENSORLG00000027686 #23	CAAP1 (ENSORLG00000004231) #25	ENSORLG00000022241	ELAVL2 (ENSORLG00000004217) #26	ENSORLG00000027845	ENSORLG00000004157 #27	DMRTA1 (ENSORLG00000004153) #28	ENSORLG00000004146 #29	RBPMS (ENSORLG00000004135)	ENSORLG00000026244 #30	ENSORLG00000004115 #31	syt4 (ENSORLG00000004098)	ENSORLG00000023575
Chinese medaka	MODERN SPECIES	966												PTPRD (ENSOSIG00000016986)	TYRP1 (ENSOSIG00000019473)	LURAP1L (ENSOSIG00000019476)	MPDZ (ENSOSIG00000019487)	ADGRL3 (ENSOSIG00000019758) #22	ENSOSIG00000023262	ENSOSIG00000023318 #23
Cyprinodontiformes	ANCESTRAL SPECIES	22	ENSGT00940000165054.C.f	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00940000154658.a #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26	ENSGT00510000047770.c.b #27	ENSGT00940000160640 #28	ENSGT00800000124172.i #29	ENSGT00940000159617	ENSGT00390000017890.b.b #30	ENSGT00940000157146.a.a #31	ENSGT00940000161036.A.e	ENSGT00530000063854 #32	ENSGT01070000253822.D.b #33	ENSGT00980000198603.A	ENSGT00540000073610.B #34	ENSGT00650000093871
Cyprinodontoidei	ANCESTRAL SPECIES	21	ENSGT00940000165054.C.f	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00940000154658.a #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26	ENSGT00510000047770.c.b #27	ENSGT00940000160640 #28	ENSGT00800000124172.i #29	ENSGT00940000159617	ENSGT00390000017890.b.b #30	ENSGT00940000157146.a.a #31	ENSGT00940000161036.A.e	ENSGT00530000063854 #32	ENSGT01070000253822.D.b #33	ENSGT00980000198603.A	ENSGT00540000073610.B #34	ENSGT00650000093871
Poeciliinae	ANCESTRAL SPECIES	21	ENSGT00650000094787	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00940000154658.a #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26	ENSGT00510000047770.c.b #27	ENSGT00940000160640 #28	ENSGT00800000124172.i #29	ENSGT00940000159617	ENSGT00390000017890.b.b #30	ENSGT00940000157146.a.a #31	ENSGT00940000161036.A.e	ENSGT00530000063854 #32	ENSGT01070000253822.D.b.q.b #33	ENSGT01070000253822.D.b.q.a.b #33	ENSGT01070000253822.D.b.q.a.a #33	ENSGT00980000198603.A
Poecilia	ANCESTRAL SPECIES	48	ENSGT00650000094787	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00940000154658.a #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26	ENSGT00510000047770.c.b.a #27	ENSGT00940000160640 #28	ENSGT00800000124172.i #29	ENSGT00940000159617	ENSGT00390000017890.b.b #30	ENSGT00940000157146.a.a #31	ENSGT00940000161036.A.e	ENSGT00530000063854 #32	ENSGT01070000253822.D.b.q.b #33	ENSGT01070000253822.D.b.q.a.a.a.a.a #33	ENSGT01070000253822.D.b.q.a.b #33	ENSGT01070000253822.D.b.q.a.a.a.b #33
NAME_6	ANCESTRAL SPECIES	398													ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00940000154658.a #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26	ENSGT00510000047770.c.b.b #27
Amazon molly	MODERN SPECIES	407												ENSPFOG00000000977	TYRP1 (ENSPFOG00000001047)	LURAP1L (ENSPFOG00000001165)	MPDZ (ENSPFOG00000001361)	ADGRL3 (ENSPFOG00000001870) #22	ENSPFOG00000002397 #23	CAAP1 (ENSPFOG00000003391) #25	ELAVL2 (ENSPFOG00000003436) #26	ENSPFOG00000003500 #27
Sailfin molly	MODERN SPECIES	602																ADGRL3 (ENSPLAG00000001195) #22
Guppy	MODERN SPECIES	448	ENSPREG00000019297	ccdc149a (ENSPREG00000019271)	ENSPREG00000019256	PPARGC1A (ENSPREG00000019171)	gba3 (ENSPREG00000019133)	ADGRA3 (ENSPREG00000019098)	KCNIP4 (ENSPREG00000018931)	sec24d (ENSPREG00000018869)	ENSPREG00000018845	myoz2a (ENSPREG00000018830)	USP53 (ENSPREG00000018805)	PTPRD (ENSPREG00000018440)	TYRP1 (ENSPREG00000018301)	LURAP1L (ENSPREG00000018293)	ENSPREG00000017839	ADGRL3 (ENSPREG00000017398) #22	ENSPREG00000017212 #23	CAAP1 (ENSPREG00000017188) #25	elavl2 (ENSPREG00000017160) #26	ENSPREG00000017063 #27	DMRTA1 (ENSPREG00000017021) #28	FABP2 (ENSPREG00000016995) #29	RBPMS (ENSPREG00000016959)	DCTN6 (ENSPREG00000016932) #30	SGCZ (ENSPREG00000016904) #31	ENSPREG00000016861	mfsd8 (ENSPREG00000016815) #32	ENSPREG00000016791 #33	ENSPREG00000016765 #33	ENSPREG00000016690 #33	ENSPREG00000016666
Platyfish	MODERN SPECIES	5	dhx15 (ENSXMAG00000008425)	PPARGC1A (ENSXMAG00000007748)	gba3 (ENSXMAG00000007766)	ADGRA3 (ENSXMAG00000007771)	KCNIP4 (ENSXMAG00000001979)	sec24d (ENSXMAG00000001944)	ENSXMAG00000001940	myoz2a (ENSXMAG00000023576)	USP53 (ENSXMAG00000021530)	PTPRD (ENSXMAG00000004920)	ENSXMAG00000028029	TYRP1 (ENSXMAG00000004910)	LURAP1L (ENSXMAG00000004908)	ENSXMAG00000027724	MPDZ (ENSXMAG00000004907)	ADGRL3 (ENSXMAG00000004882) #22	ENSXMAG00000004781 #23	CAAP1 (ENSXMAG00000022303) #25	ELAVL2 (ENSXMAG00000029211) #26	ENSXMAG00000021716 #27	DMRTA1 (ENSXMAG00000012522) #28	FABP2 (ENSXMAG00000027561) #29	RBPMS (ENSXMAG00000027637)	DCTN6 (ENSXMAG00000012493) #30	SGCZ (ENSXMAG00000012490) #31	mfsd8 (ENSXMAG00000012556) #32	ENSXMAG00000021162 #33	ENSXMAG00000012545 #33	ENSXMAG00000012542 #34	ENSXMAG00000012538 #34	ENSXMAG00000026245
NAME_4	ANCESTRAL SPECIES	512																ENSGT00940000155527.j.a #22	ENSGT00940000154658.a #23	ENSGT00390000017010 #25
Mummichog	MODERN SPECIES	2406											TYRP1 (ENSFHEG00000003082)	LURAP1L (ENSFHEG00000000611)	MPDZ (ENSFHEG00000003047)	ENSFHEG00000002996	ENSFHEG00000002960	ADGRL3 (ENSFHEG00000002945) #22	ENSFHEG00000002892 #23
Sheepshead minnow	MODERN SPECIES	414												TYRP1 (ENSCVAG00000003071)	LURAP1L (ENSCVAG00000003078)	MPDZ (ENSCVAG00000000695)	ENSCVAG00000003218	ADGRL3 (ENSCVAG00000003326) #22	ENSCVAG00000003342 ##23	ENSCVAG00000003346
Aplocheiloidei	ANCESTRAL SPECIES	65	ENSGT00940000157294.d	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00940000154658.a #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26	ENSGT00510000047770.c.b #27	ENSGT00940000160640 #28	ENSGT00800000124172.i #29	ENSGT00940000159617	ENSGT00390000017890.b.b #30	ENSGT00940000157146.a.a #31	ENSGT00940000161036.A.e	ENSGT00530000063854 #32	ENSGT01070000253822.D.b #33	ENSGT00540000073610.B #34
Turquoise killifish	MODERN SPECIES	1613	ENSNFUG00015023290	ENSNFUG00015023288	ENSNFUG00015023287	ENSNFUG00015023285	ENSNFUG00015023284	ENSNFUG00015023282	PTPRD (ENSNFUG00015006628)	ENSNFUG00015005452	ENSNFUG00015005449	ENSNFUG00015005437	TYRP1 (ENSNFUG00015005425)	LURAP1L (ENSNFUG00015005421)	MPDZ (ENSNFUG00015004270)	ENSNFUG00015004062	ENSNFUG00015004059	LPHN3 (ENSNFUG00015002277) #22	ENSNFUG00015000803 #23	FP236812.4 (ENSNFUG00015000426) #25	ENSNFUG00015000422	ENSNFUG00015000419	ENSNFUG00015000415	elavl2 (ENSNFUG00015000395) #26	PRKCSH (ENSNFUG00015000360) #27	DMRTA1 (ENSNFUG00015000348) #28	FABP2 (ENSNFUG00015000342) #29	RBPMS (ENSNFUG00015000331)	DCTN6 (ENSNFUG00015000312) #30	SGCZ (ENSNFUG00015000297) #31	ZNF438 (ENSNFUG00015000285)	ENSNFUG00015000281	BX470141.1 (ENSNFUG00015000266)
Mangrove rivulus	MODERN SPECIES	29	ENSKMAG00000005335	PPARGC1A (ENSKMAG00000005390)	ENSKMAG00000005471	gba3 (ENSKMAG00000005482)	ADGRA3 (ENSKMAG00000005518)	KCNIP4 (ENSKMAG00000005612)	ENSKMAG00000005659	sec24d (ENSKMAG00000005695)	ENSKMAG00000005720	myoz2a (ENSKMAG00000005757)	USP53 (ENSKMAG00000005777)	PTPRD (ENSKMAG00000005817)	TYRP1 (ENSKMAG00000005890)	LURAP1L (ENSKMAG00000005922)	MPDZ (ENSKMAG00000005956)	ADGRL3 (ENSKMAG00000006060) #22	ENSKMAG00000006133 #23	CAAP1 (ENSKMAG00000006286) #25	elavl2 (ENSKMAG00000006299) #26	ENSKMAG00000006331 #27	DMRTA1 (ENSKMAG00000006350) #28	ENSKMAG00000006358 #29	RBPMS (ENSKMAG00000006377)	SGCZ (ENSKMAG00000006407) #31	ENSKMAG00000006468	mfsd8 (ENSKMAG00000006512) #32	ENSKMAG00000006564 #33	ENSKMAG00000006583 #34
Percomorphaceae_C	ANCESTRAL SPECIES	20	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00980000203174	ENSGT00940000155527.j.a #22	ENSGT00980000202414	ENSGT00940000154658.a #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26	ENSGT00510000047770.c.b #27	ENSGT00940000160640 #28	ENSGT00800000124172.i #29	ENSGT00940000159617	ENSGT00390000017890.b.b #30	ENSGT00940000157146.a.a #31	ENSGT00940000161036.A.e	ENSGT00530000063854 #32	ENSGT01070000253822.D.b #33	ENSGT00980000198603.A	ENSGT00540000073610.B #34
Eupercaria	ANCESTRAL SPECIES	19	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00980000203174	ENSGT00940000155527.j.a #22	ENSGT00980000202414	ENSGT00940000154658.a #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26	ENSGT00510000047770.c.b #27	ENSGT00940000160640 #28	ENSGT00800000124172.i #29	ENSGT00940000159617	ENSGT00390000017890.b.b #30	ENSGT00940000157146.a.a #31	ENSGT00940000161036.A.e	ENSGT00530000063854 #32	ENSGT01070000253822.D.b #33	ENSGT00980000198603.A	ENSGT00540000073610.B #34
Tetraodontidae	ANCESTRAL SPECIES	29	ENSGT00940000157910	ENSGT00390000001376	ENSGT00390000008294	ENSGT00940000157294.d	ENSGT00390000015958.d	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155527.j.a #22	ENSGT00390000017010 #25	ENSGT00940000160640 #28	ENSGT00800000124172.i #29	ENSGT00940000159617	ENSGT00390000017890.b.b #30	ENSGT00940000157146.a.a #31	ENSGT00940000161036.A.e	ENSGT00530000063854 #32	ENSGT01070000253822.D.b #33	ENSGT00540000073610.B #34	ENSGT00390000002596.a	ENSGT00390000001189.b.i	ENSGT00940000156164.b	ENSGT00940000159031	ENSGT00940000157122.b.a
Fugu	MODERN SPECIES	20	lgi2a (ENSTRUG00000006766)	ccdc149a (ENSTRUG00000030376)	PPARGC1A (ENSTRUG00000007210)	ENSTRUG00000033268	gba3 (ENSTRUG00000007509)	KCNIP4 (ENSTRUG00000032857)	sec24d (ENSTRUG00000008125)	SYNPO2 (ENSTRUG00000019819)	myoz2a (ENSTRUG00000008669)	USP53 (ENSTRUG00000025974)	ENSTRUG00000031970	ENSTRUG00000033349	PTPRD (ENSTRUG00000008887)	TYRP1 (ENSTRUG00000012615)	LURAP1L (ENSTRUG00000020323)	ADGRL3 (ENSTRUG00000002392) #22	CAAP1 (ENSTRUG00000007809) #25	ENSTRUG00000031453	elavl2 (ENSTRUG00000007867) ##26	elavl2 (ENSTRUG00000030581) ##26	dmrta1 (ENSTRUG00000027628) #28	ENSTRUG00000000040 #29	RBPMS (ENSTRUG00000000041)	DCTN6 (ENSTRUG00000000046) #30	SGCZ (ENSTRUG00000027866) #31	ENSTRUG00000000057	mfsd8 (ENSTRUG00000000059) #32	ENSTRUG00000000063 #33	ENSTRUG00000028527 #34	cldnd1a (ENSTRUG00000008926)	ENSTRUG00000009026
Tetraodon	MODERN SPECIES	26	ENSTNIG00000001248	ENSTNIG00000011327	sepsecs (ENSTNIG00000011326)	PPARGC1A (ENSTNIG00000011325)	ENSTNIG00000002174	gba3 (ENSTNIG00000002058)	KCNIP4 (ENSTNIG00000011324)	sec24d (ENSTNIG00000011323)	SYNPO2 (ENSTNIG00000011322)	myoz2a (ENSTNIG00000011321)	USP53 (ENSTNIG00000011320)	PTPRD (ENSTNIG00000011319)	TYRP1 (ENSTNIG00000011318)	LURAP1L (ENSTNIG00000011317)	MPDZ (ENSTNIG00000011316)	ADGRL3 (ENSTNIG00000011315) #22	ENSTNIG00000011314 #23	CAAP1 (ENSTNIG00000011313) #25	elavl2 (ENSTNIG00000011312) ##26	ENSTNIG00000019442	DMRTA1 (ENSTNIG00000003206) #28	sumo1 (ENSTNIG00000003205)	ENSTNIG00000003204	ENSTNIG00000003203 #30	ENSTNIG00000001618	ENSTNIG00000001154	mfsd8 (ENSTNIG00000003770) #32	ENSTNIG00000000641 #33	ENSTNIG00000003769	RREB1 (ENSTNIG00000004962)	rmc1 (ENSTNIG00000004963)
Eupecaria_A	ANCESTRAL SPECIES	20	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00980000203174	ENSGT00940000155527.j.a #22	ENSGT00980000202414	ENSGT00940000154658.a #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26	ENSGT00510000047770.c.b #27	ENSGT00940000160640 #28	ENSGT00800000124172.i #29	ENSGT00940000159617	ENSGT00390000017890.b.b #30	ENSGT00940000157146.a.a #31	ENSGT00940000161036.A.e	ENSGT00530000063854 #32	ENSGT01070000253822.D.b #33	ENSGT00980000198603.A	ENSGT00540000073610.B #34
Eupecaria_B	ANCESTRAL SPECIES	20	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00980000203174	ENSGT00940000155527.j.a #22	ENSGT00980000202414	ENSGT00940000154658.a #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26	ENSGT00510000047770.c.b #27	ENSGT00940000160640 #28	ENSGT00800000124172.i #29	ENSGT00940000159617	ENSGT00390000017890.b.b #30	ENSGT00940000157146.a.a #31	ENSGT00940000161036.A.e	ENSGT00530000063854 #32	ENSGT01070000253822.D.b #33	ENSGT00980000198603.A	ENSGT00540000073610.B #34
Eupecaria_C	ANCESTRAL SPECIES	20	ENSGT00940000165054.C.f	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00980000202414	ENSGT00940000154658.a #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26	ENSGT00510000047770.c.b #27	ENSGT00940000160640 #28	ENSGT00800000124172.i #29	ENSGT00940000159617	ENSGT00390000017890.b.b #30	ENSGT00940000157146.a.a #31	ENSGT00940000161036.A.e	ENSGT00530000063854 #32	ENSGT01070000253822.D.b #33	ENSGT00540000073610.B #34	ENSGT00940000156393.a.a #35
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	19	ENSGT00940000165054.C.f	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00980000202414	ENSGT00940000154658.a #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26	ENSGT00510000047770.c.b #27	ENSGT00940000160640 #28	ENSGT00800000124172.i #29	ENSGT00940000159617	ENSGT00390000017890.b.b #30	ENSGT00940000157146.a.a #31	ENSGT00940000161036.A.e	ENSGT00530000063854 #32	ENSGT01070000253822.D.b #33	ENSGT00540000073610.B #34	ENSGT00940000156393.a.a #35
European seabass	MODERN SPECIES	16	ccdc149a (ENSDLAG00005022379)	ENSDLAG00005022394	PPARGC1A (ENSDLAG00005022412)	gba3 (ENSDLAG00005022428)	ADGRA3 (ENSDLAG00005022440)	KCNIP4 (ENSDLAG00005022495)	sec24d (ENSDLAG00005022522)	SYNPO2 (ENSDLAG00005022711)	myoz2a (ENSDLAG00005027006)	USP53 (ENSDLAG00005022719)	PTPRD (ENSDLAG00005022790)	ENSDLAG00005023769	ENSDLAG00005023772	ENSDLAG00005031040	MPDZ (ENSDLAG00005023845)	ENSDLAG00005024755 #22	ENSDLAG00005025425 #23	CAAP1 (ENSDLAG00005006023) #25	ENSDLAG00005028286 #26	ENSDLAG00005006521 #27	DMRTA1 (ENSDLAG00005006574) #28	ENSDLAG00005034801 #29	ENSDLAG00005032693	ENSDLAG00005006622 #30	ENSDLAG00005032432 #31	ENSDLAG00005006708	ENSDLAG00005030123 #32	ENSDLAG00005007130 #33	ENSDLAG00005029452 #34	ENSDLAG00005029964 #35	ENSDLAG00005021021
Large yellow croaker	MODERN SPECIES	2	lgi2a (ENSLCRG00005012703)	ENSLCRG00005012748	ccdc149a (ENSLCRG00005012752)	ENSLCRG00005012824	ADGRA3 (ENSLCRG00005012827)	gba3 (ENSLCRG00005012834)	KCNIP4 (ENSLCRG00005012837)	sec24d (ENSLCRG00005012844)	SYNPO2 (ENSLCRG00005013058)	myoz2a (ENSLCRG00005013059)	USP53 (ENSLCRG00005013064)	PTPRD (ENSLCRG00005013201)	TYRP1 (ENSLCRG00005022626)	LURAP1L (ENSLCRG00005022628)	MPDZ (ENSLCRG00005022638)	ADGRL3 (ENSLCRG00005022709) #22	ENSLCRG00005023487	ENSLCRG00005023490 #23	ENSLCRG00005023500 #25	elavl2 (ENSLCRG00005023504) #26	gpr137ba (ENSLCRG00005023507)	EGLN1 (ENSLCRG00005023508)	tsnax (ENSLCRG00005023510)	disc1 (ENSLCRG00005023511)	SIPA1L2 (ENSLCRG00005023512)	ENSLCRG00005023518	ntpcr (ENSLCRG00005023519)	ENSLCRG00005023523	ENSLCRG00005023526	KLHDC3 (ENSLCRG00005023527)	ENSLCRG00005023528
Gilthead seabream	MODERN SPECIES	1	ENSSAUG00010026697	ccdc149a (ENSSAUG00010026696)	ENSSAUG00010026692	PPARGC1A (ENSSAUG00010026690)	gba3 (ENSSAUG00010026688)	ADGRA3 (ENSSAUG00010026684)	KCNIP4 (ENSSAUG00010026681)	sec24d (ENSSAUG00010026666)	SYNPO2 (ENSSAUG00010026663)	myoz2a (ENSSAUG00010026662)	USP53 (ENSSAUG00010026657)	PTPRD (ENSSAUG00010018340)	TYRP1 (ENSSAUG00010018023)	LURAP1L (ENSSAUG00010018021)	MPDZ (ENSSAUG00010013816)	ADGRL3 (ENSSAUG00010007883) #22	ENSSAUG00010002251 #23	CAAP1 (ENSSAUG00010002020) #25	elavl2 (ENSSAUG00010001898) #26	ENSSAUG00010001874 #27	DMRTA1 (ENSSAUG00010001862) #28	FABP2 (ENSSAUG00010001856) #29	RBPMS (ENSSAUG00010001847)	DCTN6 (ENSSAUG00010001835) #30	SGCZ (ENSSAUG00010001811) #31	ENSSAUG00010001789	mfsd8 (ENSSAUG00010001388) #32	ENSSAUG00010001343 #33	ENSSAUG00010001337 #34	ENSSAUG00010001321 #35	ENSSAUG00010001304
Perciformes	ANCESTRAL SPECIES	19	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00980000203174	ENSGT00940000155527.j.a #22	ENSGT00940000154658.a #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26	ENSGT00510000047770.c.b #27	ENSGT00940000160640 #28	ENSGT00800000124172.i #29	ENSGT00940000159617	ENSGT00390000017890.b.b #30	ENSGT00940000157146.a.a #31	ENSGT00940000161036.A.e	ENSGT00530000063854 #32	ENSGT01070000253822.D.b #33	ENSGT00980000198603.A	ENSGT00540000073610.B #34	ENSGT00940000156393.a.a #35
Cottioidei	ANCESTRAL SPECIES	20	ENSGT00650000094787	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00940000154658.a #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26	ENSGT00510000047770.c.b #27	ENSGT00940000160640 #28	ENSGT00800000124172.i #29	ENSGT00940000159617	ENSGT00390000017890.b.b #30	ENSGT00940000157146.a.a #31	ENSGT00940000161036.A.e	ENSGT00530000063854 #32	ENSGT01070000253822.D.b #33	ENSGT00980000198603.A	ENSGT00540000073610.B #34	ENSGT00940000156393.a.a #35
Lumpfish	MODERN SPECIES	9	PPARGC1A (ENSCLMG00005010970)	ENSCLMG00005010965	gba3 (ENSCLMG00005010964)	ADGRA3 (ENSCLMG00005010962)	KCNIP4 (ENSCLMG00005010960)	sec24d (ENSCLMG00005006504)	SYNPO2 (ENSCLMG00005006493)	myoz2a (ENSCLMG00005006455)	USP53 (ENSCLMG00005006452)	ENSCLMG00005006450	PTPRD (ENSCLMG00005006368)	TYRP1 (ENSCLMG00005006363)	LURAP1L (ENSCLMG00005006362)	ENSCLMG00005006360	ENSCLMG00005006356	ADGRL3 (ENSCLMG00005006125) #22	ENSCLMG00005006114 #23	ENSCLMG00005006110 #25	ELAVL2 (ENSCLMG00005006033) #26	ENSCLMG00005006032 #27	DMRTA1 (ENSCLMG00005006031) #28	FABP2 (ENSCLMG00005006029) #29	RBPMS (ENSCLMG00005006022)	ENSCLMG00005006019 #30	SGCZ (ENSCLMG00005006017) #31	ENSCLMG00005006014	mfsd8 (ENSCLMG00005006012) #32	ENSCLMG00005006011 #34	ENSCLMG00005006010 #35	ENSCLMG00005006007	ENSCLMG00005006006
Stickleback	MODERN SPECIES	7	ccdc149a (ENSGACG00000019569)	ENSGACG00000019549	PPARGC1A (ENSGACG00000019546)	gba3 (ENSGACG00000019544)	ADGRA3 (ENSGACG00000019543)	KCNIP4 (ENSGACG00000019541)	ENSGACG00000019539	sec24d (ENSGACG00000019537)	SYNPO2 (ENSGACG00000019536)	myoz2a (ENSGACG00000019535)	USP53 (ENSGACG00000019533)	PTPRD (ENSGACG00000019528)	TYRP1 (ENSGACG00000019503)	LURAP1L (ENSGACG00000019502)	MPDZ (ENSGACG00000019499)	ADGRL3 (ENSGACG00000019498) #22	ENSGACG00000019493 #23	CAAP1 (ENSGACG00000019489) #25	elavl2 (ENSGACG00000019484) #26	ENSGACG00000019483 #27	DMRTA1 (ENSGACG00000019482) #28	FABP2 (ENSGACG00000019474) #29	RBPMS (ENSGACG00000019471)	ENSGACG00000019464 #30	SGCZ (ENSGACG00000019458) #31	ENSGACG00000019456	ENSGACG00000019450	mfsd8 (ENSGACG00000019443) #32	ENSGACG00000019438 #33	ENSGACG00000019436	ENSGACG00000019435 #34
Perciformes_a	ANCESTRAL SPECIES	18	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00980000203174	ENSGT00940000155527.j.a #22	ENSGT00940000154658.a #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26	ENSGT00510000047770.c.b #27	ENSGT00940000160640 #28	ENSGT00800000124172.i #29	ENSGT00940000159617	ENSGT00390000017890.b.b #30	ENSGT00940000157146.a.a #31	ENSGT00940000161036.A.e	ENSGT00530000063854 #32	ENSGT01070000253822.D.b #33	ENSGT00540000073610.B #34	ENSGT00940000156393.a.a #35	ENSGT00390000002596.a
Pike perch	MODERN SPECIES	65	ENSSLUG00000023358	PPARGC1A (ENSSLUG00000023352)	gba3 (ENSSLUG00000023345)	ADGRA3 (ENSSLUG00000022914)	KCNIP4 (ENSSLUG00000022875)	sec24d (ENSSLUG00000022346)	ENSSLUG00000022306	myoz2a (ENSSLUG00000022299)	USP53 (ENSSLUG00000022283)	PTPRD (ENSSLUG00000019313)	ENSSLUG00000019070	TYRP1 (ENSSLUG00000019066)	LURAP1L (ENSSLUG00000019062)	MPDZ (ENSSLUG00000015084)	ENSSLUG00000014877	ADGRL3 (ENSSLUG00000010650) #22	ENSSLUG00000025298 #23	ENSSLUG00000025270 #25	elavl2 (ENSSLUG00000025255) #26
Channel bull blenny	MODERN SPECIES	9	KCNIP4 (ENSCGOG00000011991)	ENSCGOG00000011982	sec24d (ENSCGOG00000010688)	ENSCGOG00000010643	ENSCGOG00000010641	ENSCGOG00000010638	myoz2a (ENSCGOG00000022655)	USP53 (ENSCGOG00000022651)	ENSCGOG00000022646	PTPRD (ENSCGOG00000015824)	TYRP1 (ENSCGOG00000015529)	LURAP1L (ENSCGOG00000015528)	ENSCGOG00000015527	MPDZ (ENSCGOG00000015268)	ENSCGOG00000015257	ADGRL3 (ENSCGOG00000012346) #22	ENSCGOG00000011945 #23	CAAP1 (ENSCGOG00000011927) #25	elavl2 (ENSCGOG00000011921) #26	ENSCGOG00000011919	ENSCGOG00000011912 #27	DMRTA1 (ENSCGOG00000011906) #28	FABP2 (ENSCGOG00000011898) #29	RBPMS (ENSCGOG00000011895)	ENSCGOG00000011894	ENSCGOG00000011893 #35	ENSCGOG00000011891 #34	ENSCGOG00000011883 #33	mfsd8 (ENSCGOG00000011812) #32	ENSCGOG00000011808	ccdc96 (ENSCGOG00000011804)
Ballan wrasse	MODERN SPECIES	1165																ENSLBEG00000027336 #22
Percomorphaceae_D	ANCESTRAL SPECIES	20	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00980000203174	ENSGT00940000155527.j.a #22	ENSGT00990000203806	ENSGT00940000154658.a #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26	ENSGT00510000047770.c.b #27	ENSGT00940000160640 #28	ENSGT00800000124172.i #29	ENSGT00940000159617	ENSGT00390000017890.b.b #30	ENSGT00940000157146.a.a #31	ENSGT00940000161036.A.e	ENSGT00530000063854 #32	ENSGT01070000253822.D.b #33	ENSGT00540000073610.B #34	ENSGT00940000156393.a.a #35
Carangaria	ANCESTRAL SPECIES	20	ENSGT00940000165054.C.f	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00990000203806	ENSGT00940000154658.a #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26	ENSGT00510000047770.c.b #27	ENSGT00940000160640 #28	ENSGT00800000124172.i #29	ENSGT00940000159617	ENSGT00390000017890.b.b #30	ENSGT00940000157146.a.a #31	ENSGT00940000161036.A.e	ENSGT00530000063854 #32	ENSGT01070000253822.D.b #33	ENSGT00540000073610.B #34	ENSGT00940000156393.a.a #35
Carangaria_A	ANCESTRAL SPECIES	32	ENSGT00940000165054.C.e.a	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00990000203806	ENSGT00940000154658.a #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26
Seriola	ANCESTRAL SPECIES	92	ENSGT00940000165054.C.e.a	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00990000203806	ENSGT00940000154658.a #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26
Greater amberjack	MODERN SPECIES	104	ccdc149a (ENSSDUG00000007338)	ENSSDUG00000007372	PPARGC1A (ENSSDUG00000007408)	ADGRA3 (ENSSDUG00000007460)	gba3 (ENSSDUG00000007517)	KCNIP4 (ENSSDUG00000007532)	sec24d (ENSSDUG00000007582)	SYNPO2 (ENSSDUG00000007614)	myoz2a (ENSSDUG00000007627)	USP53 (ENSSDUG00000007643)	PTPRD (ENSSDUG00000007674)	ENSSDUG00000007762	TYRP1 (ENSSDUG00000007769)	LURAP1L (ENSSDUG00000007782)	MPDZ (ENSSDUG00000007803)	ADGRL3 (ENSSDUG00000007904) #22	ENSSDUG00000007944	ENSSDUG00000007974 #23	CAAP1 (ENSSDUG00000008127) #25	elavl2 (ENSSDUG00000008140) #26
Yellowtail amberjack	MODERN SPECIES	3028	ENSSLDG00000006896	ccdc149a (ENSSLDG00000006908)	ENSSLDG00000006937	PPARGC1A (ENSSLDG00000006987)	gba3 (ENSSLDG00000007033)	ADGRA3 (ENSSLDG00000007055)	KCNIP4 (ENSSLDG00000007147)	sec24d (ENSSLDG00000007259)	SYNPO2 (ENSSLDG00000007325)	myoz2a (ENSSLDG00000007340)	USP53 (ENSSLDG00000007359)	PTPRD (ENSSLDG00000007511)	TYRP1 (ENSSLDG00000007913)	LURAP1L (ENSSLDG00000007937)	MPDZ (ENSSLDG00000007978)	ADGRL3 (ENSSLDG00000008084) #22	ENSSLDG00000008148	ENSSLDG00000008240 #23	CAAP1 (ENSSLDG00000008437) #25	elavl2 (ENSSLDG00000008455) #26
Barramundi perch	MODERN SPECIES	17	ENSLCAG00010017032	ccdc149a (ENSLCAG00010017029)	ENSLCAG00010017007	PPARGC1A (ENSLCAG00010017001)	gba3 (ENSLCAG00010017000)	ADGRA3 (ENSLCAG00010016996)	KCNIP4 (ENSLCAG00010016993)	sec24d (ENSLCAG00010016774)	SYNPO2 (ENSLCAG00010016710)	myoz2a (ENSLCAG00010016708)	USP53 (ENSLCAG00010016704)	PTPRD (ENSLCAG00010016357)	TYRP1 (ENSLCAG00010016274)	LURAP1L (ENSLCAG00010016272)	MPDZ (ENSLCAG00010016203)	ADGRL3 (ENSLCAG00010015142) #22	ENSLCAG00010014177 #23	CAAP1 (ENSLCAG00010014034) #25	SLC45A4 (ENSLCAG00010014030)	DENND3 (ENSLCAG00010013982)	ATP4A (ENSLCAG00010013219)	TBRG4 (ENSLCAG00010013111)	ENSLCAG00010013106	glipr2l (ENSLCAG00010013101)	steap4 (ENSLCAG00010013095)	ENSLCAG00010013088	steap4 (ENSLCAG00010013083)	ENSLCAG00010013081	ENSLCAG00010013078	mindy3 (ENSLCAG00010013064)	ITGA8 (ENSLCAG00010013051)
Pleuronectoidei	ANCESTRAL SPECIES	17	ENSGT00940000165054.C.f	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00940000154658.a #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26	ENSGT00510000047770.c.b #27	ENSGT00940000160640 #28	ENSGT00800000124172.i #29	ENSGT00940000159617	ENSGT00390000017890.b.b #30	ENSGT00940000157146.a.a #31	ENSGT00940000161036.A.e	ENSGT00530000063854 #32	ENSGT01070000253822.D.b #33	ENSGT00540000073610.B #34	ENSGT00940000156393.a.a #35	ENSGT00390000002596.a
Tongue sole	MODERN SPECIES		ENSCSEG00000006920	PPARGC1A (ENSCSEG00000006884)	gba3 (ENSCSEG00000006878)	ENSCSEG00000006872	ADGRA3 (ENSCSEG00000006830)	KCNIP4 (ENSCSEG00000006784)	sec24d (ENSCSEG00000006764)	SYNPO2 (ENSCSEG00000006762)	myoz2a (ENSCSEG00000006757)	USP53 (ENSCSEG00000006719)	PTPRD (ENSCSEG00000006693)	ENSCSEG00000006686	TYRP1 (ENSCSEG00000006672)	LURAP1L (ENSCSEG00000006665)	MPDZ (ENSCSEG00000006527)	ADGRL3 (ENSCSEG00000006436) #22	ENSCSEG00000006362 #23	CAAP1 (ENSCSEG00000006347) #25	elavl2 (ENSCSEG00000006335) #26	ENSCSEG00000006296	ENSCSEG00000006280	ATP1B2 (ENSCSEG00000006274)	ENSCSEG00000006137	zgc:123107 (ENSCSEG00000006042)	ENSCSEG00000006034	anapc10 (ENSCSEG00000006022)	abce1 (ENSCSEG00000005978)	CAMTA2 (ENSCSEG00000005942)	ENSCSEG00000005932	ENSCSEG00000005928	eno3 (ENSCSEG00000005912)
Turbot	MODERN SPECIES	11	ENSSMAG00000011559	ENSSMAG00000036898	PPARGC1A (ENSSMAG00000011571)	ENSSMAG00000011635	gba3 (ENSSMAG00000011641)	ADGRA3 (ENSSMAG00000011652)	KCNIP4 (ENSSMAG00000009912)	sec24d (ENSSMAG00000009962)	SYNPO2 (ENSSMAG00000009992)	myoz2a (ENSSMAG00000010051)	ENSSMAG00000010060	PTPRD (ENSSMAG00000010085)	TYRP1 (ENSSMAG00000010205)	LURAP1L (ENSSMAG00000010216)	MPDZ (ENSSMAG00000010226)	ENSSMAG00000010310 #22	ENSSMAG00000010548 #23	CAAP1 (ENSSMAG00000010726) #25	ENSSMAG00000010745 #26	ENSSMAG00000010774 #27	DMRTA1 (ENSSMAG00000010840) #28	ENSSMAG00000010853 #29	ENSSMAG00000010871	ENSSMAG00000010905 #30	ENSSMAG00000010942 #31	ENSSMAG00000010960	ENSSMAG00000010999 #32	ENSSMAG00000011023 #33	ENSSMAG00000035603 #34	ENSSMAG00000011064 #35	ENSSMAG00000033283
Anabantaria	ANCESTRAL SPECIES	19	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00980000203174	ENSGT00940000155527.j.a #22	ENSGT00980000202414	ENSGT00940000154658.a #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26	ENSGT00510000047770.c.b #27	ENSGT00940000160640 #28	ENSGT00800000124172.i #29	ENSGT00940000159617	ENSGT00390000017890.b.b #30	ENSGT00940000157146.a.a #31	ENSGT00940000161036.A.e	ENSGT00530000063854 #32	ENSGT01070000253822.D.b #33	ENSGT00540000073610.B #34	ENSGT00940000156393.a.a #35
Zig-zag eel	MODERN SPECIES	9	ENSMAMG00000026600	ccdc149a (ENSMAMG00000005569)	ENSMAMG00000005544	PPARGC1A (ENSMAMG00000005531)	gba3 (ENSMAMG00000005526)	ADGRA3 (ENSMAMG00000005447)	KCNIP4 (ENSMAMG00000005426)	sec24d (ENSMAMG00000005409)	SYNPO2 (ENSMAMG00000005405)	myoz2a (ENSMAMG00000005400)	USP53 (ENSMAMG00000005390)	PTPRD (ENSMAMG00000005311)	TYRP1 (ENSMAMG00000005278)	LURAP1L (ENSMAMG00000005271)	MPDZ (ENSMAMG00000005182)	ENSMAMG00000005041 #22	ENSMAMG00000004862 #23	CAAP1 (ENSMAMG00000004841) #25	ENSMAMG00000004829	ENSMAMG00000004806 #26	ENSMAMG00000004674 #27	DMRTA1 (ENSMAMG00000004643) #28	ENSMAMG00000004624 #29	ENSMAMG00000004604	ENSMAMG00000004366 #30	ENSMAMG00000004328 #31	ENSMAMG00000004311	ENSMAMG00000004270 #32	ENSMAMG00000026435 #33	ENSMAMG00000025393	ENSMAMG00000025189
Anabantoidei	ANCESTRAL SPECIES	24	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00980000203174	ENSGT00940000155527.j.a #22	ENSGT00980000202414	ENSGT00940000154658.a #23	ENSGT00390000017010 #25	ENSGT00940000156823.e #26	ENSGT00510000047770.c.b #27	ENSGT00940000160640 #28	ENSGT00800000124172.i #29	ENSGT00940000159617	ENSGT00390000017890.b.b #30	ENSGT00940000157146.a.a #31	ENSGT00940000161036.A.e	ENSGT00530000063854 #32	ENSGT01070000253822.D.b #33	ENSGT00540000073610.B #34	ENSGT00940000156393.a.a #35
Climbing perch	MODERN SPECIES	9	ccdc149a (ENSATEG00000016582)	ENSATEG00000016651	PPARGC1A (ENSATEG00000016702)	gba3 (ENSATEG00000016764)	ADGRA3 (ENSATEG00000016776)	KCNIP4 (ENSATEG00000016803)	sec24d (ENSATEG00000016860)	SYNPO2 (ENSATEG00000017221)	myoz2a (ENSATEG00000017228)	USP53 (ENSATEG00000017245)	PTPRD (ENSATEG00000017283)	TYRP1 (ENSATEG00000017446)	LURAP1L (ENSATEG00000017466)	ENSATEG00000026345	MPDZ (ENSATEG00000017540)	ENSATEG00000017807 #22	ENSATEG00000028927	ENSATEG00000017971 #23	CAAP1 (ENSATEG00000018064) #25	ENSATEG00000018073 #26	ENSATEG00000027806 #27	DMRTA1 (ENSATEG00000018104) #28	ENSATEG00000018157 #29	ENSATEG00000018184	ENSATEG00000018250 #30	ENSATEG00000018273 #31	ENSATEG00000018302	ENSATEG00000018344 #32	ENSATEG00000018405 #33	ENSATEG00000018746	ENSATEG00000018729 #33
Siamese fighting fish	MODERN SPECIES	10	ccdc149a (ENSBSLG00000018107)	ENSBSLG00000018041	PPARGC1A (ENSBSLG00000017998)	gba3 (ENSBSLG00000017992)	ADGRA3 (ENSBSLG00000017720)	KCNIP4 (ENSBSLG00000017625)	sec24d (ENSBSLG00000015555)	SYNPO2 (ENSBSLG00000015420)	myoz2a (ENSBSLG00000015413)	USP53 (ENSBSLG00000015366)	ENSBSLG00000015352	PTPRD (ENSBSLG00000004441)	LURAP1L (ENSBSLG00000003235)	MPDZ (ENSBSLG00000002122)	ENSBSLG00000002092	ADGRL3 (ENSBSLG00000001907) #22	ENSBSLG00000001323 #23	CAAP1 (ENSBSLG00000001197) #25	elavl2 (ENSBSLG00000000766) #26	ENSBSLG00000000731 #27	DMRTA1 (ENSBSLG00000000722) #28	FABP2 (ENSBSLG00000000720) #29	RBPMS (ENSBSLG00000000706)	ENSBSLG00000000686 #30	SGCZ (ENSBSLG00000000669) #31	ENSBSLG00000000651	mfsd8 (ENSBSLG00000000635) #32	ENSBSLG00000000606 #33	ENSBSLG00000000582 #34	cldnd1a (ENSBSLG00000000449)	ACY3 (ENSBSLG00000000424)
Tiger tail seahorse	MODERN SPECIES	263										ENSHCOG00000006220	TYRP1 (ENSHCOG00000006206)	LURAP1L (ENSHCOG00000006193)	ENSHCOG00000006190	ENSHCOG00000006162	ENSHCOG00000006079	ADGRL3 (ENSHCOG00000006063) #22	ENSHCOG00000006029 #23	elavl2 (ENSHCOG00000005961) #26	ENSHCOG00000005917 #28	ENSHCOG00000005903	ENSHCOG00000005785 #29	RBPMS (ENSHCOG00000005774)	ENSHCOG00000005755	mfsd8 (ENSHCOG00000005735) #32	ENSHCOG00000005564	ENSHCOG00000000671 #34	pde5ab (ENSHCOG00000005548)	ENSHCOG00000005502	mad2l1 (ENSHCOG00000000878)	ENSHCOG00000005473	ENSHCOG00000000622
Pinecone sodierfish	MODERN SPECIES	9	ccdc149a (ENSMMDG00005015256)	sod3a (ENSMMDG00005015252)	ENSMMDG00005014665	PPARGC1A (ENSMMDG00005014661)	gba3 (ENSMMDG00005014659)	ADGRA3 (ENSMMDG00005013961)	KCNIP4 (ENSMMDG00005013889)	sec24d (ENSMMDG00005013882)	SYNPO2 (ENSMMDG00005013867)	myoz2a (ENSMMDG00005013846)	USP53 (ENSMMDG00005013843)	PTPRD (ENSMMDG00005013826)	TYRP1 (ENSMMDG00005013822)	LURAP1L (ENSMMDG00005013820)	MPDZ (ENSMMDG00005013814)	ADGRL3 (ENSMMDG00005011905) #22	ENSMMDG00005011884 #23	CAAP1 (ENSMMDG00005011878) #25	elavl2 (ENSMMDG00005011843) #26	ENSMMDG00005011836 #27	DMRTA1 (ENSMMDG00005011830) #28	FABP2 (ENSMMDG00005011827) #29	RBPMS (ENSMMDG00005011825)	DCTN6 (ENSMMDG00005011824) #30	SGCZ (ENSMMDG00005011821) #31	ENSMMDG00005011818	mfsd8 (ENSMMDG00005011787) #32	ENSMMDG00005011775 #33	ENSMMDG00005011772 #33	ENSMMDG00005011769 #34	ENSMMDG00005011765 #35
Protacanthopterygii	ANCESTRAL SPECIES	20	ENSGT00940000153289.a.a.b	ENSGT00390000015958.d	ENSGT00940000155800.a.b.c	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985.e	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00940000154658.a #23	ENSGT00950000182886.a.b	ENSGT01090000260185.a	ENSGT00940000154273.b	ENSGT00940000159844	ENSGT00940000159372	ENSGT00940000160289	ENSGT00940000161071	ENSGT00940000166370	ENSGT00730000112287	ENSGT00940000174877	ENSGT00950000182903.a.b.i	ENSGT01100000263613	ENSGT00940000163927.a.a.v	ENSGT00940000153491.b.b.b
Northern pike	MODERN SPECIES	23	ccdc149a (ENSELUG00000016931)	dhx15 (ENSELUG00000016984)	PPARGC1A (ENSELUG00000017027)	gba3 (ENSELUG00000017046)	ADGRA3 (ENSELUG00000000643)	KCNIP4 (ENSELUG00000017200)	sec24d (ENSELUG00000017252)	SYNPO2 (ENSELUG00000017264)	myoz2a (ENSELUG00000017272)	USP53 (ENSELUG00000017340)	PTPRD (ENSELUG00000017519)	ENSELUG00000026202	TYRP1 (ENSELUG00000017554)	LURAP1L (ENSELUG00000000688)	MPDZ (ENSELUG00000017678)	ADGRL3 (ENSELUG00000017939) #22	ENSELUG00000026228	ENSELUG00000018451 #23	ENSELUG00000018661	ENSELUG00000026966	ENSELUG00000018725	BCL6B (ENSELUG00000018787)	SLC16A13 (ENSELUG00000018819)	acap1 (ENSELUG00000018894)	agfg2 (ENSELUG00000018937)	ENSELUG00000018954	si:ch73-335l21.4 (ENSELUG00000018979)	dvl2 (ENSELUG00000019029)	ENSELUG00000019044	ENSELUG00000027323	ENSELUG00000019034
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	256	ENSGT00940000157772.c	ENSGT00940000153289.a.a.b.c	ENSGT00940000155800.b	ENSGT00950000183137.b.a.i	ENSGT00940000157235.l	ENSGT00940000158985.e.b	ENSGT00950000182924.A.b.a.b.h	ENSGT00950000183054.a.a.b.d	ENSGT00950000183054.a.a.a.a.h	ENSGT00950000183027.b.b.e	ENSGT00940000156337.c.g	ENSGT00940000153617.B.h	ENSGT00940000155804.k.a.a	ENSGT00530000063790.b.d	ENSGT00940000155586.B.g.b	ENSGT00940000155527.j.a.e.a #22	ENSGT00940000154658.a.d #23	ENSGT00940000156022.a.c.b	ENSGT01090000260185.a	ENSGT00940000156022.a.c.a	ENSGT00940000159844.h	ENSGT00940000160289.l	ENSGT00940000161071.i	ENSGT00940000166370.f	ENSGT00730000112287.h	ENSGT00940000174877	ENSGT00950000182903.a.b.i.g.a	ENSGT00940000158535	ENSGT00940000154838.A.f.b.b	ENSGT00940000164016.e	ENSGT00940000161062.c.b
Salmoninae_a	ANCESTRAL SPECIES	20	ENSGT00940000157772.c	ENSGT00940000153289.a.a.b.c	ENSGT00940000165054.B	ENSGT00940000155800.b	ENSGT00950000183137.b.a.i	ENSGT00940000157235.l	ENSGT00940000158985.e.b	ENSGT00950000182924.A.b.a.b.h	ENSGT00950000183054.a.a.a.a.h	ENSGT00950000183027.b.b.e	ENSGT00940000156337.c.g	ENSGT00940000153617.B.h	ENSGT00940000155804.k.a.a	ENSGT00530000063790.b.d	ENSGT00940000155586.B.g.b	ENSGT00940000155527.j.a.e.a #22	ENSGT00940000154658.a.d #23	ENSGT00940000156022.a.c.b	ENSGT01090000260185.a.a	ENSGT01090000260185.a.b	ENSGT00940000154273.b.h	ENSGT00940000156022.a.c.a	ENSGT00940000159844.h	ENSGT00940000160289.l	ENSGT00940000161071.i	ENSGT00940000166370.f	ENSGT00730000112287.h	ENSGT00940000174877	ENSGT00950000182903.a.b.i.g.a	ENSGT00730000112044.e.a.b	ENSGT01100000263613.c
Salmo	ANCESTRAL SPECIES	49	ENSGT00940000157772.c	ENSGT00940000153289.a.a.b.c	ENSGT00940000165054.B	ENSGT00940000155800.b	ENSGT00950000183137.b.a.i	ENSGT00940000157235.l	ENSGT00940000158985.e.a.a	ENSGT00950000182924.A.b.a.b.h	ENSGT00950000183054.a.a.a.a.h	ENSGT00950000183027.b.b.e	ENSGT00940000156337.c.g	ENSGT00940000153617.B.h	ENSGT00940000155804.k.a.a	ENSGT00530000063790.b.d	ENSGT00940000155586.B.g.b	ENSGT00940000155527.j.a.e.a #22	ENSGT00940000154658.a.d #23	ENSGT00940000156022.a.c.b	ENSGT01090000260185.a.a	ENSGT00940000154273.b.h	ENSGT01090000260185.a.b	ENSGT00940000156022.a.c.a	ENSGT00940000159844.h	ENSGT00940000160289.l	ENSGT00940000155511.m	ENSGT00940000166370.f	ENSGT00730000112287.h	ENSGT00950000182903.a.b.i.g.a	ENSGT00940000158535.w	ENSGT00730000112044.e.a.b	ENSGT01100000263613.c
River trout	MODERN SPECIES	38	ENSSTUG00000040665	ENSSTUG00000040820	ENSSTUG00000040837	PPARGC1A (ENSSTUG00000040880)	ADGRA3 (ENSSTUG00000040967)	KCNIP4 (ENSSTUG00000041209)	ENSSTUG00000041307	sec24d (ENSSTUG00000041379)	SYNPO2 (ENSSTUG00000043865)	MYOZ2 (ENSSTUG00000043874)	USP53 (ENSSTUG00000043882)	PTPRD (ENSSTUG00000044156)	TYRP1 (ENSSTUG00000050648)	LURAP1L (ENSSTUG00000050649)	MPDZ (ENSSTUG00000050655)	ADGRL3 (ENSSTUG00000050737) #22	ENSSTUG00000051008 #23	ENSSTUG00000051014	ENSSTUG00000030551	ENSSTUG00000030569	BCL6B (ENSSTUG00000030577)	acap1 (ENSSTUG00000030593)	ENSSTUG00000030841	ENSSTUG00000030850	si:ch73-335l21.4 (ENSSTUG00000030854)	dvl2 (ENSSTUG00000030865)	ENSSTUG00000031101	ENSSTUG00000031105	ponzr1 (ENSSTUG00000031108)	ENSSTUG00000031117	ENSSTUG00000031130
Atlantic salmon	MODERN SPECIES	26	ENSSSAG00000063308	ENSSSAG00000106996	PPARGC1A (ENSSSAG00000063349)	ENSSSAG00000063507	KCNIP4 (ENSSSAG00000092519)	sec24d (ENSSSAG00000002760)	SYNPO2 (ENSSSAG00000007715)	MYOZ2 (ENSSSAG00000102011)	USP53 (ENSSSAG00000007723)	ENSSSAG00000035522	ENSSSAG00000112123	PTPRD (ENSSSAG00000111433)	ENSSSAG00000076592	ci150 (ENSSSAG00000076598)	ENSSSAG00000076710	ENSSSAG00000078516 #22	ENSSSAG00000079215 #23	ENSSSAG00000101481	ENSSSAG00000079518	ENSSSAG00000109805	ENSSSAG00000079541	ENSSSAG00000114456	ENSSSAG00000079545	acap1 (ENSSSAG00000087747)	ENSSSAG00000079568	ENSSSAG00000092192	si:ch73-335l21.4 (ENSSSAG00000079580)	dvl2 (ENSSSAG00000079590)	ENSSSAG00000079609	ENSSSAG00000079611	ENSSSAG00000079612
Oncorhynchus	ANCESTRAL SPECIES	9	ENSGT00940000157772.c	ENSGT00940000153289.a.a.b.c	ENSGT00940000165054.B	ENSGT00940000155800.b	ENSGT00950000183137.b.a.i	ENSGT00940000157235.l	ENSGT00940000158985.e.b	ENSGT00950000182924.A.b.a.b.h	ENSGT00950000183054.a.a.a.a.h	ENSGT00950000183027.b.b.e	ENSGT00940000156337.c.g	ENSGT00940000153617.B.h	ENSGT00940000155804.k.a.a	ENSGT00530000063790.b.d	ENSGT00940000155586.B.g.b	ENSGT00940000155527.j.a.e.a #22	ENSGT00940000154658.a.d #23	ENSGT00940000156022.a.c.b	ENSGT01090000260185.a.a	ENSGT00940000154273.b.h.a	ENSGT00940000156022.a.c.a	ENSGT00940000159844.h	ENSGT00940000160289.l	ENSGT00940000161071.i	ENSGT00940000166370.f	ENSGT00730000112287.h	ENSGT00940000174877	ENSGT00950000182903.a.b.i.g.a	ENSGT00730000112044.e.a.b	ENSGT01100000263613.c	ENSGT00940000163927.a.a.u
Rainbow trout	MODERN SPECIES	13	ENSOMYG00000057396	ENSOMYG00000062329	PPARGC1A (ENSOMYG00000045926)	ENSOMYG00000045869	ENSOMYG00000045831	KCNIP4 (ENSOMYG00000045813)	sec24d (ENSOMYG00000045731)	SYNPO2 (ENSOMYG00000045708)	MYOZ2 (ENSOMYG00000055798)	ENSOMYG00000025319	USP53 (ENSOMYG00000045689)	PTPRD (ENSOMYG00000044756)	TYRP1 (ENSOMYG00000044591)	LURAP1L (ENSOMYG00000044588)	MPDZ (ENSOMYG00000043957)	ENSOMYG00000034945 #22	ENSOMYG00000033362 #23	ENSOMYG00000033004	ENSOMYG00000032995	ENSOMYG00000055106	ENSOMYG00000032987	ENSOMYG00000032944	ENSOMYG00000032847	acap1 (ENSOMYG00000030898)	ENSOMYG00000071940	agfg2 (ENSOMYG00000030472)	ENSOMYG00000030390	si:ch73-335l21.4 (ENSOMYG00000030444)	ENSOMYG00000018086	dvl2 (ENSOMYG00000030433)	ENSOMYG00000030413
Oncorhynchus_a	ANCESTRAL SPECIES	16	ENSGT00940000157772.c	ENSGT00940000153289.a.a.b.c	ENSGT00940000165054.B	ENSGT00940000155800.b	ENSGT00950000183137.b.a.i	ENSGT00940000157235.l	ENSGT00940000158985.e.b	ENSGT00950000182924.A.b.a.b.h	ENSGT00950000183054.a.a.a.a.h	ENSGT00950000183027.b.b.e	ENSGT00940000156337.c.g	ENSGT00940000153617.B.h	ENSGT00940000155804.k.a.a	ENSGT00530000063790.b.d	ENSGT00940000155586.B.g.b	ENSGT00940000155527.j.a.e.a #22	ENSGT00940000154658.a.d #23	ENSGT00940000156022.a.c.b	ENSGT01090000260185.a.a	ENSGT00730000112044.e.a.b	ENSGT01100000263613.c	ENSGT00940000163927.a.a.u	ENSGT00940000153491.b.b.b.c	ENSGT00940000166316.e	ENSGT00390000014072.B	ENSGT00940000156128.a.a	ENSGT00940000165960.b	ENSGT00940000167107	ENSGT00390000000592.w.b	ENSGT00940000165100.b.c	ENSGT00940000165987.b
Coho salmon	MODERN SPECIES	29	ENSOKIG00005003493	PPARGC1A (ENSOKIG00005003470)	ADGRA3 (ENSOKIG00005003387)	ENSOKIG00005003345	KCNIP4 (ENSOKIG00005003328)	sec24d (ENSOKIG00005002237)	SYNPO2 (ENSOKIG00005001919)	MYOZ2 (ENSOKIG00005001910)	USP53 (ENSOKIG00005001862)	ENSOKIG00005001836	ENSOKIG00005047144	PTPRD (ENSOKIG00005029261)	TYRP1 (ENSOKIG00005028467)	LURAP1L (ENSOKIG00005028452)	MPDZ (ENSOKIG00005022843)	ADGRL3 (ENSOKIG00005016342) #22	ENSOKIG00005016099	ENSOKIG00005015595 #23	ENSOKIG00005015528	ENSOKIG00005015469	BCL6B (ENSOKIG00005015446)	acap1 (ENSOKIG00005015336)	agfg2 (ENSOKIG00005015299)	ENSOKIG00005015281	si:ch73-335l21.4 (ENSOKIG00005015257)	dvl2 (ENSOKIG00005015058)	ENSOKIG00005015036	ENSOKIG00005015029	ENSOKIG00005015027	ponzr1 (ENSOKIG00005015022)	ENSOKIG00005015014
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	55																ADGRL3 (ENSOTSG00005042055) #22	ENSOTSG00005046578 #23	TRIP6 (ENSOTSG00005046586)	ENSOTSG00005046589	BCL6B (ENSOTSG00005046590)	acap1 (ENSOTSG00005046591)	agfg2 (ENSOTSG00005046596)	ENSOTSG00005046598	si:ch73-335l21.4 (ENSOTSG00005046600)	dvl2 (ENSOTSG00005046604)	ENSOTSG00005046662	ENSOTSG00005046664	ponzr1 (ENSOTSG00005046665)	ENSOTSG00005046667	cnpy4 (ENSOTSG00005046668)	ENSOTSG00005046669
Chinook salmon	MODERN SPECIES	40																ADGRL3 (ENSOTSG00005041695) #22	ENSOTSG00005041609	ENSOTSG00005041603 #23	ENSOTSG00005041601	ENSOTSG00005041600	BCL6B (ENSOTSG00005041595)	acap1 (ENSOTSG00005037711)	agfg2 (ENSOTSG00005037693)	ENSOTSG00005037692	si:ch73-335l21.4 (ENSOTSG00005037688)	si:ch73-335l21.2 (ENSOTSG00005037687)	dvl2 (ENSOTSG00005037686)	ENSOTSG00005037678	ENSOTSG00005037674	ponzr1 (ENSOTSG00005037672)	ENSOTSG00005037670
Huchen	MODERN SPECIES	230															MPDZ (ENSHHUG00000027039)	ENSHHUG00000026094 #22	ENSHHUG00000026084	ENSHHUG00000025821 #23	ENSHHUG00000025793	TRIP6 (ENSHHUG00000025785)	ENSHHUG00000025780	BCL6B (ENSHHUG00000025776)	acap1 (ENSHHUG00000025677)	agfg2 (ENSHHUG00000025669)	zgc:103625 (ENSHHUG00000025667)
Salmoninae	ANCESTRAL SPECIES	594														ENSGT01090000260185.b	ENSGT00940000156022.a.d	ENSGT00940000155527.j.a.e.b #22	ENSGT00940000154658.a.c #23	ENSGT00940000154273.b.g	ENSGT00940000159844.g	ENSGT00940000159372	ENSGT00940000160289.k	ENSGT00940000161071.j	ENSGT00940000166370.e	ENSGT00730000112287.g	ENSGT00950000182903.a.b.i.g.b	ENSGT01100000263613.d	ENSGT00940000163927.a.a.v.a	ENSGT00940000153491.b.b.b.d	ENSGT00940000166316.f
Salmoninae_a	ANCESTRAL SPECIES	34	ENSGT00940000163471.a.f	ENSGT00390000015958.d	ENSGT00940000155800.a.b.c	ENSGT00950000183137.b.a.j	ENSGT00940000160460	ENSGT00940000157235.k	ENSGT00970000193500	ENSGT01060000248649	ENSGT00950000183054.a.a.a.a.g	ENSGT00950000183027.b.b.f	ENSGT00940000156337.c.h	ENSGT00940000153617.B.g	ENSGT00940000155804.k.a.b	ENSGT00530000063790.b.c	ENSGT00940000155586.B.g.a	ENSGT00940000155527.j.a.e.b #22	ENSGT00940000154658.a.c #23	ENSGT01090000260185.b	ENSGT00940000156022.a.d	ENSGT00940000159844.g	ENSGT00940000159372	ENSGT00940000160289.k	ENSGT00940000161071.j	ENSGT00940000166370.e	ENSGT00730000112287.g	ENSGT00950000182903.a.b.i.g.b	ENSGT00990000208909	ENSGT01100000263613.d	ENSGT00940000163927.a.a.v.a	ENSGT00940000153491.b.b.b.d	ENSGT00940000166316.f
Salmo	ANCESTRAL SPECIES	18	ENSGT00940000155800.a.b.c	ENSGT00950000183137.b.a.j	ENSGT00940000160460	ENSGT00940000157235.k	ENSGT00940000162818.c.a.g.b	ENSGT00940000158985.f	ENSGT00950000182924.A.b.a.b.g	ENSGT01060000248649	ENSGT00950000183054.a.a.a.a.g	ENSGT00950000183027.b.b.f	ENSGT00940000156337.c.h	ENSGT00940000153617.B.g	ENSGT00940000155804.k.a.b	ENSGT00530000063790.b.c	ENSGT00940000155586.B.g.a	ENSGT00940000155527.j.a.e.b #22	ENSGT00940000154658.a.c #23	ENSGT01090000260185.b	ENSGT00940000156022.a.d	ENSGT00940000159844.g	ENSGT00940000159372	ENSGT00940000160289.k	ENSGT00940000161071.j	ENSGT00940000166370.e	ENSGT00730000112287.g	ENSGT00940000174877	ENSGT00950000182903.a.b.i.g.b	ENSGT00990000208909	ENSGT01100000263613.d	ENSGT00940000163927.a.a.u	ENSGT00940000163927.a.a.v.a
Atlantic salmon	MODERN SPECIES	9	dhx15 (ENSSSAG00000067298)	PPARGC1A (ENSSSAG00000108573)	gba3 (ENSSSAG00000082579)	ADGRA3 (ENSSSAG00000069698)	KCNIP4 (ENSSSAG00000121775)	ENSSSAG00000101838	sec24d (ENSSSAG00000069906)	ENSSSAG00000110901	ENSSSAG00000074270	MYOZ2 (ENSSSAG00000074272)	USP53 (ENSSSAG00000074275)	PTPRD (ENSSSAG00000096916)	tyrp-1 (ENSSSAG00000075543)	LURAP1L (ENSSSAG00000122135)	ENSSSAG00000075588	ENSSSAG00000076648 #22	ENSSSAG00000079701 #23	ENSSSAG00000117990	ENSSSAG00000079961	ENSSSAG00000079969	ENSSSAG00000079975	acap1 (ENSSSAG00000080011)	agfg2 (ENSSSAG00000080121)	ENSSSAG00000080127	si:ch73-335l21.2 (ENSSSAG00000080136)	dvl2 (ENSSSAG00000080142)	ENSSSAG00000080197	ENSSSAG00000090733	ENSSSAG00000113794	ponzr1 (ENSSSAG00000080201)	ENSSSAG00000098248
River trout	MODERN SPECIES	35	ccdc149a (ENSSTUG00000001799)	dhx15 (ENSSTUG00000002166)	PPARGC1A (ENSSTUG00000002234)	gba3 (ENSSTUG00000002255)	ADGRA3 (ENSSTUG00000002273)	ENSSTUG00000002450	KCNIP4 (ENSSTUG00000002478)	SEC24C (ENSSTUG00000002697)	SYNPO2 (ENSSTUG00000005339)	ENSSTUG00000005351	USP53 (ENSSTUG00000005403)	PTPRD (ENSSTUG00000005964)	TYRP1 (ENSSTUG00000028684)	LURAP1L (ENSSTUG00000028702)	MPDZ (ENSSTUG00000028873)	ADGRL3 (ENSSTUG00000033369) #22	ENSSTUG00000040419 #23	ENSSTUG00000040514	ENSSTUG00000040538	BCL6B (ENSSTUG00000040579)	SLC16A13 (ENSSTUG00000040627)	ENSSTUG00000040660	acap1 (ENSSTUG00000040685)	agfg2 (ENSSTUG00000040829)	ENSSTUG00000040864	si:ch73-335l21.4 (ENSSTUG00000040890)	dvl2 (ENSSTUG00000040929)	ENSSTUG00000041643	ENSSTUG00000041708	ponzr1 (ENSSTUG00000041721)	ENSSTUG00000041735
Oncorhynchus	ANCESTRAL SPECIES	31	ENSGT00940000155800.a.b.c	ENSGT00950000183137.b.a.j.a	ENSGT00940000160460	ENSGT00940000157235.k	ENSGT00970000193500	ENSGT00940000158985.f	ENSGT00950000182924.A.b.a.b.g	ENSGT00950000183054.a.a.a.a.g	ENSGT00950000183027.b.b.f	ENSGT00940000156337.c.h	ENSGT00940000153617.B.g	ENSGT00960000188752.b.a.a.b	ENSGT00940000155804.k.a.b	ENSGT00530000063790.b.c	ENSGT00940000155586.B.g.a	ENSGT00940000155527.j.a.e.b #22	ENSGT00940000154658.a.c #23	ENSGT01090000260185.b	ENSGT00940000156022.a.d	ENSGT00940000159844.g	ENSGT00940000159372	ENSGT00940000160289.k	ENSGT00940000161071.j	ENSGT00940000166370.e	ENSGT00730000112287.g	ENSGT00950000182903.a.b.i.g.b	ENSGT00990000208909	ENSGT01100000263613.d	ENSGT00940000163927.a.a.v.a	ENSGT00940000153491.b.b.b.d	ENSGT00940000166316.f
Oncorhynchus_a	ANCESTRAL SPECIES	30	ENSGT00940000155800.a.b.c	ENSGT00950000183137.b.a.j.a	ENSGT00940000160460	ENSGT00940000157235.k	ENSGT00970000193500	ENSGT00940000158985.f	ENSGT00950000182924.A.b.a.b.g	ENSGT00950000183054.a.a.a.a.g	ENSGT00950000183027.b.b.f	ENSGT00940000156337.c.h	ENSGT00940000153617.B.g	ENSGT00960000188752.b.a.a.b	ENSGT00940000155804.k.a.b	ENSGT00530000063790.b.c	ENSGT00940000155586.B.g.a	ENSGT00940000155527.j.a.e.b #22	ENSGT00940000154658.a.c #23	ENSGT01090000260185.b	ENSGT00940000156022.a.d	ENSGT00940000159844.g	ENSGT00940000159372	ENSGT00940000160289.k	ENSGT00940000161071.j	ENSGT00940000166370.e	ENSGT00730000112287.g	ENSGT00950000182903.a.b.i.g.b	ENSGT00990000208909	ENSGT01100000263613.d	ENSGT00940000163927.a.a.v.a	ENSGT00940000153491.b.b.b.d	ENSGT00940000166316.f
Chinook salmon	MODERN SPECIES	1	dhx15 (ENSOTSG00005047193)	PPARGC1A (ENSOTSG00005047184)	gba3 (ENSOTSG00005047182)	ADGRA3 (ENSOTSG00005047179)	ENSOTSG00005047174	KCNIP4 (ENSOTSG00005047173)	sec24d (ENSOTSG00005046997)	ENSOTSG00005046991	MYOZ2 (ENSOTSG00005046989)	USP53 (ENSOTSG00005046984)	PTPRD (ENSOTSG00005024026)	ENSOTSG00005023889	TYRP1 (ENSOTSG00005023884)	MPDZ (ENSOTSG00005015616)	cdk6 (ENSOTSG00005015574)	ADGRL3 (ENSOTSG00005008372) #22	ENSOTSG00005008304 #23	ENSOTSG00005008295	ENSOTSG00005008294	ENSOTSG00005008291	SLC16A13 (ENSOTSG00005008287)	acap1 (ENSOTSG00005002953)	agfg2 (ENSOTSG00005002772)	si:ch73-335l21.4 (ENSOTSG00005002763)	ENSOTSG00005002753	dvl2 (ENSOTSG00005002746)	ENSOTSG00005002743	ponzr1 (ENSOTSG00005002742)	ENSOTSG00005002729	ENSOTSG00005002719	ENSOTSG00005002704
Coho salmon	MODERN SPECIES	7	PPARGC1A (ENSOKIG00005023592)	ENSOKIG00005023589	ENSOKIG00005023583	gba3 (ENSOKIG00005023578)	ADGRA3 (ENSOKIG00005023469)	ENSOKIG00005023401	KCNIP4 (ENSOKIG00005023368)	sec24d (ENSOKIG00005018397)	SYNPO2 (ENSOKIG00005018225)	MYOZ2 (ENSOKIG00005018208)	USP53 (ENSOKIG00005018165)	PTPRD (ENSOKIG00005017112)	TYRP1 (ENSOKIG00005016952)	LURAP1L (ENSOKIG00005016940)	MPDZ (ENSOKIG00005010909)	ADGRL3 (ENSOKIG00005006122) #22	ENSOKIG00005005786	ENSOKIG00005005518 #23	ENSOKIG00005005458	ENSOKIG00005005451	ENSOKIG00005005445	ENSOKIG00005005442	SLC16A13 (ENSOKIG00005005433)	acap1 (ENSOKIG00005005394)	agfg2 (ENSOKIG00005005355)	ENSOKIG00005005344	si:ch73-335l21.4 (ENSOKIG00005005335)	dvl2 (ENSOKIG00005005303)	ENSOKIG00005005280	ENSOKIG00005005274	ponzr1 (ENSOKIG00005005264)
Rainbow trout	MODERN SPECIES	30	ADGRA3 (ENSOMYG00000045348)	ENSOMYG00000045316	KCNIP4 (ENSOMYG00000045307)	sec24d (ENSOMYG00000044726)	ENSOMYG00000044658	MYOZ2 (ENSOMYG00000044655)	USP53 (ENSOMYG00000044651)	ENSOMYG00000076736	ENSOMYG00000050015	PTPRD (ENSOMYG00000029183)	ENSOMYG00000025863	TYRP1 (ENSOMYG00000025839)	LURAP1L (ENSOMYG00000025827)	MPDZ (ENSOMYG00000022089)	ENSOMYG00000075032	ENSOMYG00000013446 #22	ENSOMYG00000012761 #23	ENSOMYG00000012701	ENSOMYG00000074378	ENSOMYG00000052636	ENSOMYG00000012672	ENSOMYG00000012661	acap1 (ENSOMYG00000010288)	agfg2 (ENSOMYG00000009492)	ENSOMYG00000009460	si:ch73-335l21.4 (ENSOMYG00000009419)	dvl2 (ENSOMYG00000009408)	ENSOMYG00000009372	ENSOMYG00000009340	ponzr1 (ENSOMYG00000009316)	ENSOMYG00000056354
Huchen	MODERN SPECIES	412																ENSHHUG00000014088 #22	ENSHHUG00000015197 #23	ENSHHUG00000016131	ENSHHUG00000016161	BCL6B (ENSHHUG00000016168)	SLC16A13 (ENSHHUG00000016192)	acap1 (ENSHHUG00000016201)	agfg2 (ENSHHUG00000016247)	ENSHHUG00000016288	si:ch73-335l21.4 (ENSHHUG00000016299)	dvl2 (ENSHHUG00000016309)	ENSHHUG00000016421	ponzr1 (ENSHHUG00000016423)	ENSHHUG00000016432
Salmoninae	ANCESTRAL SPECIES	2113															ENSGT00940000156348.B.j	ENSGT00940000155527.j.a.f #22
Huchen	MODERN SPECIES	279										PTPRD (ENSHHUG00000030699)	TYRP1 (ENSHHUG00000030797)	LURAP1L (ENSHHUG00000030809)	MPDZ (ENSHHUG00000030827)	ENSHHUG00000031095	ENSHHUG00000031104	ENSHHUG00000031109 #22
Otomorpha	ANCESTRAL SPECIES	13	ENSGT00530000067688	ENSGT00940000159031	ENSGT00390000002596.a	ENSGT00390000001189.b.i	ENSGT00390000017890.b.b #30	ENSGT00940000159617	ENSGT00800000124172.i #29	ENSGT00940000160640 #28	ENSGT00510000047770.c.b #27	ENSGT00940000156823.e #26	ENSGT00390000017010 #25	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00990000203806	ENSGT00940000154658.a #23
Clupeiformes	ANCESTRAL SPECIES	370					ENSGT00390000017890.b.b #30	ENSGT00940000159617.d	ENSGT00800000124172.i #29	ENSGT00940000160640 #28	ENSGT00510000047770.c.b #27	ENSGT00940000156823.e #26	ENSGT00390000017010 #25	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00940000154658.a #23
Atlantic herring	MODERN SPECIES	9	pop7 (ENSCHAG00000024851)	dctn1a (ENSCHAG00000024469)	ENSCHAG00000024408 #30	ENSCHAG00000024391	FABP2 (ENSCHAG00000024387) #29	ENSCHAG00000024385	DMRTA1 (ENSCHAG00000024382) #28	ENSCHAG00000024369 #27	ELAVL2 (ENSCHAG00000024234) #26	CAAP1 (ENSCHAG00000024225) #25	PTPRD (ENSCHAG00000022128)	ENSCHAG00000022072	TYRP1 (ENSCHAG00000022041)	LURAP1L (ENSCHAG00000022033)	MPDZ (ENSCHAG00000018153)	ADGRL3 (ENSCHAG00000016770) #22	ENSCHAG00000012496 #23	ENSCHAG00000012178	syt4 (ENSCHAG00000012167)	vbp1 (ENSCHAG00000012118)	rab39bb (ENSCHAG00000012110)	zgc:162171 (ENSCHAG00000012096)	ENSCHAG00000011346	zgc:92429 (ENSCHAG00000011286)	ENSCHAG00000010906	ENSCHAG00000010868	zgc:109889 (ENSCHAG00000010846)	htr2cl1 (ENSCHAG00000010715)	ENSCHAG00000010692	tnfsf10l (ENSCHAG00000010677)	CLCN5 (ENSCHAG00000007231)
Denticle herring	MODERN SPECIES		GJE1 (ENSDCDG00000015050)	txlnbb (ENSDCDG00000015046)	DCTN1 (ENSDCDG00000004926)	ENSDCDG00000004744	OTOF (ENSDCDG00000004576)	metap1 (ENSDCDG00000004459)	adh8a (ENSDCDG00000004391)	elavl2 (ENSDCDG00000004298) #26	SHPRH (ENSDCDG00000004007)	CAAP1 (ENSDCDG00000003981) #25	ENSDCDG00000003979	PTPRD (ENSDCDG00000034628)	TYRP1 (ENSDCDG00000034559)	LURAP1L (ENSDCDG00000034558)	MPDZ (ENSDCDG00000034214)	ENSDCDG00000031518 #22	ENSDCDG00000031443	ENSDCDG00000031441	ENSDCDG00000031359 #23	SLC24A2 (ENSDCDG00000031308)	ENSDCDG00000031305	NRXN2 (ENSDCDG00000031126)	RASGRP2 (ENSDCDG00000031048)	ENSDCDG00000031038	H2AZ1 (ENSDCDG00000031029)	DDIT4L (ENSDCDG00000031026)	PPP3CA (ENSDCDG00000030774)	BANK1 (ENSDCDG00000030753)	NFIB (ENSDCDG00000030705)	zdhhc21 (ENSDCDG00000030694)	plaa (ENSDCDG00000030671)
Otophysi	ANCESTRAL SPECIES	373														ENSGT00950000182898.a.a.a.a.a.g	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00990000203806.b	ENSGT00940000154658.a #23	ENSGT00940000159778.a	ENSGT00390000015386.b	ENSGT00940000161707.a.b
Characiphysae	ANCESTRAL SPECIES	58	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000154644.jb.b.g.b	ENSGT00940000159867	ENSGT00390000011640	ENSGT00390000012424.a	ENSGT00940000161064	ENSGT00940000163749.a.a	ENSGT01030000234819	ENSGT00940000155978.a.a	ENSGT00940000163149.b.c.b.b.a.a.a	ENSGT00940000160483.k.b	ENSGT00950000182898.a.a.a.a.a.g	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00940000154658.a #23	ENSGT00940000159778.a	ENSGT00390000015386.b	ENSGT00940000161707.a.b	ENSGT01040000240385.B	ENSGT00940000164991.a.a	ENSGT00940000160206.e	ENSGT00940000161519	ENSGT00940000159445	ENSGT00390000018123.a.b	ENSGT01100000263644	ENSGT00390000006970	ENSGT01030000234574.A.b.b	ENSGT00950000186357	ENSGT00390000012563
Channel catfish	MODERN SPECIES	21	pp1b (ENSIPUG00000011678)	rela (ENSIPUG00000011563)	zgc:63470 (ENSIPUG00000011545)	drap1 (ENSIPUG00000011518)	MAP3K11 (ENSIPUG00000011483)	ENSIPUG00000011460	ENSIPUG00000011448	ENSIPUG00000011439	NRXN2 (ENSIPUG00000011361)	ENSIPUG00000011337	crgm2 (ENSIPUG00000011305)	RASGRP2 (ENSIPUG00000011247)	SLC29A2 (ENSIPUG00000011209)	SLC29A2 (ENSIPUG00000011173)	MPDZ (ENSIPUG00000011101)	adgrl3 (ENSIPUG00000010583) #22	ENSIPUG00000010251 #23	hgfac (ENSIPUG00000010221)	DOK7 (ENSIPUG00000010189)	adra2c (ENSIPUG00000010180)	ENSIPUG00000010152	ENSIPUG00000010145	ENSIPUG00000010122	ENSIPUG00000010092	ENSIPUG00000010080	ENSIPUG00000010064	ENSIPUG00000009996	ENSIPUG00000009978	emc4 (ENSIPUG00000009917)	lpcat4 (ENSIPUG00000009900)	nop10 (ENSIPUG00000009890)
Characiphysae_b	ANCESTRAL SPECIES	148	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000154644.jb.b.g.b	ENSGT00940000159867	ENSGT00390000011640	ENSGT00390000012424.a	ENSGT00940000161064	ENSGT00940000163749.a.a	ENSGT01030000234819	ENSGT00940000155978.a.a	ENSGT00940000163149.b.c.b.b.a.a.a	ENSGT00940000160483.k.b	ENSGT00950000182898.a.a.a.a.a.g	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00940000154658.a #23	ENSGT00940000159778.a	ENSGT00390000015386.b	ENSGT00940000161707.a.b
Characoidei	ANCESTRAL SPECIES	168	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000154644.jb.b.g.b	ENSGT00940000159867	ENSGT00390000011640	ENSGT00390000012424.a	ENSGT00940000161064	ENSGT00940000163749.a.a	ENSGT01030000234819	ENSGT00940000155978.a.a	ENSGT00940000163149.b.c.b.b.a.a.a	ENSGT00940000160483.k.b	ENSGT00950000182898.a.a.a.a.a.g	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00940000154658.a #23	ENSGT00940000159778.a	ENSGT00390000015386.b	ENSGT00940000161707.a.b
Red-bellied piranha	MODERN SPECIES	51	LURAP1L (ENSPNAG00000014904)	ppp1cb (ENSPNAG00000014924)	rela (ENSPNAG00000005984)	zgc:63470 (ENSPNAG00000014971)	drap1 (ENSPNAG00000015008)	MAP3K11 (ENSPNAG00000015016)	ENSPNAG00000015026	ENSPNAG00000003345	NRXN2 (ENSPNAG00000015184)	ENSPNAG00000015200	RASGRP2 (ENSPNAG00000015291)	ENSPNAG00000015310	MPDZ (ENSPNAG00000015412)	ENSPNAG00000015448	ENSPNAG00000015457	ADGRL3 (ENSPNAG00000015641) #22	ENSPNAG00000015779 #23	HGFAC (ENSPNAG00000015800)	DOK7 (ENSPNAG00000015834)	ADRA2C (ENSPNAG00000015848)	ENSPNAG00000015957	aptx (ENSPNAG00000015984)	SLC44A1 (ENSPNAG00000016046)
Mexicana tetra	MODERN SPECIES	13	prorsd1 (ENSAMXG00000025264)	CCDC88A (ENSAMXG00000020481)	PPP4R3C (ENSAMXG00000020618)	PNPT1 (ENSAMXG00000042321)	ENSAMXG00000020741	ENSAMXG00000036963	ENSAMXG00000039087	ENSAMXG00000031439	ENSAMXG00000031515	ENSAMXG00000025265	ENSAMXG00000040772	ENSAMXG00000041855	RASGRP2 (ENSAMXG00000020940)	ENSAMXG00000020980	MPDZ (ENSAMXG00000021159)	ADGRL3 (ENSAMXG00000021273) #22	ENSAMXG00000035435	ENSAMXG00000030987	ENSAMXG00000021540 #23	ENSAMXG00000031940	HGFAC (ENSAMXG00000021594)	DOK7 (ENSAMXG00000021597)	ADRA2C (ENSAMXG00000025266)	ENSAMXG00000042568	ENSAMXG00000031293	SLC24A2 (ENSAMXG00000021601)	ltb4r (ENSAMXG00000030787)	ltb4r2a (ENSAMXG00000029069)	HEATR5B (ENSAMXG00000021607)	STRN (ENSAMXG00000021609)	ENSAMXG00000033032
Electric eel	MODERN SPECIES	1023																ENSEEEG00000011148 #22
Cyprinoidei	ANCESTRAL SPECIES	41	ENSGT00390000013315	ENSGT00390000013104	ENSGT00940000162219.x	ENSGT00940000163235.A.a.b	ENSGT00940000177923	ENSGT00940000156076.a.a.a.a.d.b	ENSGT00940000156076.b	ENSGT00940000156076.a.a.a.a.c	ENSGT00940000157468.a.a.a	ENSGT00940000165179.b	ENSGT00910000144226	ENSGT00390000005535	ENSGT00940000157089.B	ENSGT00950000182898.a.a.a.a.a.g	ENSGT00940000155586.B	ENSGT00940000155527.j.a #22	ENSGT00940000154658.a #23	ENSGT00940000159778.a	ENSGT00390000015386.b	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00940000163520.A.a.a.b.q	ENSGT00940000166741	ENSGT00940000156397.a.b	ENSGT01030000234754	ENSGT00940000167415	ENSGT01040000240385.A.a.b.b	ENSGT00940000160527.b	ENSGT01030000234592.A.a.a.a.a	ENSGT00390000019377.a.a.b	ENSGT00390000000230	ENSGT00390000013973.A.b.a.b.d
Cyprininae	ANCESTRAL SPECIES	290	ENSGT00940000164871.b.e.b.a	ENSGT01040000240558.a	ENSGT00940000177923	ENSGT00940000156076.a.a.a.a.d.b	ENSGT00940000156076.b	ENSGT00940000156076.a.a.a.a.c	ENSGT00940000157468.a.a.a.e	ENSGT00940000165179.b.a.b	ENSGT00910000144226	ENSGT00390000005535	ENSGT00940000157089.B	ENSGT00950000182898.a.a.a.a.a.g.e	ENSGT00940000155586.B.f	ENSGT00940000156348.B.n	ENSGT00940000155586.B.e.a	ENSGT00940000155527.j.a #22	ENSGT00940000154658.a #23	ENSGT00940000159778.a.b	ENSGT00390000015386.b.c.a	ENSGT01030000234532.B.e.a.a.a.b.a.a	ENSGT00940000166741.d	ENSGT00940000156397.a.b.c	ENSGT01030000234754.a.b	ENSGT00940000167415	ENSGT01040000240385.A.a.b.b	ENSGT00940000160527.b.a	ENSGT01030000234592.A.a.a.a.a.g	ENSGT00940000160527.b.b	ENSGT01030000234592.A.a.a.a.a.h	ENSGT00390000019377.a.a.b.a	ENSGT00390000000230.q.b
Goldfish	DUPLICATION
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	2720																ADGRL3 (ENSCARG00000061453) #22
Goldfish	MODERN SPECIES	3085																ADGRL3 (ENSCARG00000050502) #22
Goldfish	MODERN SPECIES	25	lrp4 (ENSCARG00000026352)	psmd9 (ENSCARG00000027725)	ywhae2 (ENSCARG00000027749)	ENSCARG00000027850	SIPA1 (ENSCARG00000027900)	RASGRP2 (ENSCARG00000027971)	slc35c1 (ENSCARG00000028088)	tollip (ENSCARG00000028096)	ENSCARG00000028141	RPH3A (ENSCARG00000028220)	ENSCARG00000028369	HECTD4 (ENSCARG00000028420)	MAPK8IP1 (ENSCARG00000029315)	ENSCARG00000029360	MPDZ (ENSCARG00000029634)	ADGRL3 (ENSCARG00000034602) #22	ENSCARG00000036171 #23	ENSCARG00000036201	DOK7 (ENSCARG00000036310)	ENSCARG00000036325	ENSCARG00000036359	ENSCARG00000005828	ENSCARG00000005833	ENSCARG00000005842	ENSCARG00000005848	ENSCARG00000005877	znf219 (ENSCARG00000005924)	ENSCARG00000005944	btr12 (ENSCARG00000005961)	ENSCARG00000005983	ENSCARG00000006000
Cyprininae_a	ANCESTRAL SPECIES	141	ENSGT01030000234532.A.a.a.a.a.a.a.b	ENSGT00940000160644.d	ENSGT00940000160483.k.b.d	ENSGT00390000013315.a.a	ENSGT00390000013104.d.b	ENSGT00940000157468.a.a.a.f	ENSGT00940000165179.b.a.a	ENSGT00910000144226	ENSGT00390000005535	ENSGT00940000157089.B	ENSGT00950000182898.a.a.a.a.a.g.e	ENSGT00950000182898.a.a.a.a.a.g.f	ENSGT00940000155586.B.f	ENSGT00940000156348.B.n	ENSGT00940000155586.B.e.a	ENSGT00940000155527.j.a #22	ENSGT00940000154658.a #23	ENSGT00940000159778.a.b	ENSGT00390000015386.b.c.a	ENSGT01030000234532.B.e.a.a.a.b.a.a	ENSGT00940000166741.d	ENSGT00940000156397.a.b.c	ENSGT00940000166741.c	ENSGT00940000156397.a.b.d	ENSGT01030000234754.b	ENSGT00940000167415	ENSGT01040000240385.A.a.b.b	ENSGT00940000160527.b.a.a	ENSGT01030000234592.A.a.a.a.a.h	ENSGT00390000019377.a.a.b.a	ENSGT00390000000230.q.b
Common carp reference	DUPLICATION
Common carp reference	MODERN SPECIES	6	lrp4 (ENSCCRG00000015632)	psmd9 (ENSCCRG00000081299)	ywhae2 (ENSCCRG00000065575)	ENSCCRG00000061648	ENSCCRG00000057719	ENSCCRG00000069042	slc35c1 (ENSCCRG00000066984)	tollip (ENSCCRG00000066323)	ENSCCRG00000077788	ENSCCRG00000041593	ENSCCRG00000061890	ENSCCRG00000001161	ENSCCRG00000080446	ENSCCRG00000080579	ENSCCRG00000066362	ENSCCRG00000071847 #22	ENSCCRG00000045044 #23	ENSCCRG00000043098	ENSCCRG00000043081	ENSCCRG00000077346	ENSCCRG00000054764	ENSCCRG00000070638	ENSCCRG00000070480	ENSCCRG00000053835	ENSCCRG00000078771	ENSCCRG00000065302	ENSCCRG00000070796	ENSCCRG00000061270	ENSCCRG00000000045	ENSCCRG00000057271	ENSCCRG00000056594
Common carp reference	MODERN SPECIES		ywhae2 (ENSCCRG00000061887)	ENSCCRG00000003971	ENSCCRG00000040406	ENSCCRG00000075515	slc35c1 (ENSCCRG00000067739)	tollip (ENSCCRG00000020513)	ENSCCRG00000056257	ENSCCRG00000071859	ENSCCRG00000082617	ENSCCRG00000074248	ENSCCRG00000073285	mrpl21 (ENSCCRG00000000488)	ENSCCRG00000061685	ENSCCRG00000063445	ENSCCRG00000081606	ENSCCRG00000080023 #22	ENSCCRG00000075826	ENSCCRG00000056466	ENSCCRG00000082189	ENSCCRG00000060855	ENSCCRG00000027851	ENSCCRG00000026577	ENSCCRG00000052846	ENSCCRG00000080695	ENSCCRG00000058836	ENSCCRG00000000161	ENSCCRG00000067756	ENSCCRG00000006041	znf219 (ENSCCRG00000077973)	btr12 (ENSCCRG00000016884)	ENSCCRG00000019395
Golden-line barbel	MODERN SPECIES	1047										ENSSGRG00000055312	mrpl21 (ENSSGRG00000055311)	MAPK8IP1 (ENSSGRG00000055310)	ENSSGRG00000055309	ENSSGRG00000055308	ENSSGRG00000055306	ENSSGRG00000055305 #22
Zebrafish	MODERN SPECIES	22	ENSDARG00000041086	SIPA1 (ENSDARG00000076697)	RASGRP2 (ENSDARG00000099092)	ENSDARG00000102247	slc35c1 (ENSDARG00000104669)	tollip (ENSDARG00000098486)	ENSDARG00000099470	ENSDARG00000104914	ENSDARG00000109688	ENSDARG00000105490	ENSDARG00000098989	HECTD4 (ENSDARG00000101079)	mrpl21 (ENSDARG00000003846)	MAPK8IP1 (ENSDARG00000090326)	ENSDARG00000099078	ADGRL3 (ENSDARG00000090624) #22	ENSDARG00000105714 ##23	ENSDARG00000105782	SLC24A2 (ENSDARG00000063158)	ENSDARG00000088625	cbln6 (ENSDARG00000035718)	cbln8 (ENSDARG00000019294)	ENSDARG00000078979	znf219 (ENSDARG00000079738)	ENSDARG00000101446	btr12 (ENSDARG00000051809)	ENSDARG00000090371	ENSDARG00000051804	ENSDARG00000068065	casq1b (ENSDARG00000018105)	PEA15 (ENSDARG00000079771)
Osteoglossiformes	ANCESTRAL SPECIES	60	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00800000124172.i #29	ENSGT00940000160640 #28	ENSGT00940000156823.e.g #26	ENSGT00510000047770.c.b #27	ENSGT00940000156823.e.h.b #26	ENSGT00390000017010 #25	ENSGT00940000153617.D	ENSGT00940000155804.k.a	ENSGT00530000063790.b.g	ENSGT00940000155586.B	ENSGT00940000159617.b	ENSGT00390000017890.b.b #30	ENSGT00940000155527.j.a #22	ENSGT00940000154658.a #23	ENSGT00950000182886.a.b
Asian bonytongue	MODERN SPECIES	20	DTX4 (ENSSFOG00015031699)	coro1b (ENSSFOG00015012799)	ENSSFOG00015025322	ACY3 (ENSSFOG00015012691)	cldnd1a (ENSSFOG00015012670)	ENSSFOG00015030155	ENSSFOG00015033008	ENSSFOG00015017277	CPZ (ENSSFOG00015017288)	GPR78 (ENSSFOG00015017342)	trmt44 (ENSSFOG00015017345)	acox3 (ENSSFOG00015017377)	ENSSFOG00015017448	ENSSFOG00015017481	DCTN6 (ENSSFOG00015017515) #30	ADGRL3 (ENSSFOG00015017590) #22	ENSSFOG00015032438 #23	ENSSFOG00015030930 #23	ENSSFOG00015017865 #23	ENSSFOG00015017941	MPDZ (ENSSFOG00015018045)	LURAP1L (ENSSFOG00015031107)	TYRP1 (ENSSFOG00015018063)	PTPRD (ENSSFOG00015018170)	CAAP1 (ENSSFOG00015030065) #25	elavl2 (ENSSFOG00015027679) #26	DMRTA1 (ENSSFOG00015029453) #28	FABP2 (ENSSFOG00015029809) #29	ENSSFOG00015029766	USP53 (ENSSFOG00015018293)	myoz2a (ENSSFOG00015018331)
P. kingsleyae	MODERN SPECIES	93					ENSPKIG00000006307	DMRTA1 (ENSPKIG00000006264) #28	ENSPKIG00000006226 #27	ELAVL2 (ENSPKIG00000006187) #26	CAAP1 (ENSPKIG00000006115) #25	PTPRD (ENSPKIG00000006054)	TYRP1 (ENSPKIG00000006008)	LURAP1L (ENSPKIG00000006002)	ENSPKIG00000005990	ENSPKIG00000005955	ENSPKIG00000005930	ADGRL3 (ENSPKIG00000005620) #22	ENSPKIG00000005072 #23	ENSPKIG00000004882	DCTN6 (ENSPKIG00000004859) #30	ENSPKIG00000004836	gtf2e2 (ENSPKIG00000004797)	ENSPKIG00000004761	HTRA3 (ENSPKIG00000004725)	acox3 (ENSPKIG00000004695)	trmt44 (ENSPKIG00000004663)	GPR78 (ENSPKIG00000004649)	CPZ (ENSPKIG00000004602)	hmx4 (ENSPKIG00000004560)	hmx1 (ENSPKIG00000004577)	ADRA2C (ENSPKIG00000004535)	HGFAC (ENSPKIG00000004495)