Ovalentaria ANCESTRAL SPECIES 20 ENSGT00390000015958.d ENSGT00940000155800.a.a #9 ENSGT00950000183137.b.a #10 ENSGT00940000160460 #11 ENSGT00940000157235 #12 ENSGT00940000158985 #13 ENSGT00950000182924.A.b.a.b #14 ENSGT00950000183054.a.a.a.a #15 ENSGT00950000183027.b.b #16 ENSGT00940000156337.c #17 ENSGT00940000153617.B #18 ENSGT00940000155804.k.a #19 ENSGT00530000063790.b #20 ENSGT00940000155586.A ##21 ENSGT00940000155586.B #21 ENSGT00940000155527.j.a #22 ENSGT00990000203806 #23 ENSGT00940000154658.a #24 ENSGT00390000017010 #25 ENSGT00940000156823.e #26 ENSGT00510000047770.c.b #27 ENSGT00940000160640 #28 ENSGT00800000124172.i #29 ENSGT00940000159617 #30 ENSGT00390000017890.b.b #31 ENSGT00940000157146.a.a #32 ENSGT00940000161036.A.e #33 ENSGT00530000063854 #34 ENSGT01070000253822.D.b #35 ENSGT00980000198603.A ENSGT00540000073610.B #36 Ovalentaria_B ANCESTRAL SPECIES 19 ENSGT00390000015958.d ENSGT00940000155800.a.a #9 ENSGT00950000183137.b.a #10 ENSGT00940000160460 #11 ENSGT00940000157235 #12 ENSGT00940000158985 #13 ENSGT00950000182924.A.b.a.b #14 ENSGT00950000183054.a.a.a.a #15 ENSGT00950000183027.b.b #16 ENSGT00940000156337.c #17 ENSGT00940000153617.B #18 ENSGT00940000155804.k.a #19 ENSGT00530000063790.b #20 ENSGT00940000155586.A ##21 ENSGT00940000155586.B #21 ENSGT00940000155527.j.a #22 ENSGT00990000203806 #23 ENSGT00940000154658.a #24 ENSGT00390000017010 #25 ENSGT00940000156823.e #26 ENSGT00510000047770.c.b #27 ENSGT00940000160640 #28 ENSGT00800000124172.i #29 ENSGT00940000159617 #30 ENSGT00390000017890.b.b #31 ENSGT00940000157146.a.a #32 ENSGT00940000161036.A.e #33 ENSGT00530000063854 #34 ENSGT01070000253822.D.b #35 ENSGT00540000073610.B #36 ENSGT00940000156393.a.a #37 Cichlidae ANCESTRAL SPECIES 20 ENSGT00940000165054.C.f #8 ENSGT00390000015958.d ENSGT00940000155800.a.a #9 ENSGT00950000183137.b.a #10 ENSGT00940000160460 #11 ENSGT00940000157235 #12 ENSGT00940000158985 #13 ENSGT00950000182924.A.b.a.b #14 ENSGT00950000183054.a.a.a.a #15 ENSGT00950000183027.b.b #16 ENSGT00940000156337.c #17 ENSGT00940000153617.B #18 ENSGT00940000155804.k.a #19 ENSGT00530000063790.b #20 ENSGT00940000155586.B #21 ENSGT00940000155527.j.a #22 ENSGT00990000203806 #23 ENSGT00940000154658.a #24 ENSGT00390000017010 #25 ENSGT00940000156823.e #26 ENSGT00510000047770.c.b #27 ENSGT00940000160640 #28 ENSGT00800000124172.i #29 ENSGT00940000159617 #30 ENSGT00390000017890.b.b #31 ENSGT00940000157146.a.a #32 ENSGT00940000161036.A.e #33 ENSGT00530000063854 #34 ENSGT01070000253822.D.b #35 ENSGT00540000073610.B #36 ENSGT00940000156393.a.a #37 Pseudocrenilabrinae ANCESTRAL SPECIES 18 ENSGT00940000165054.C.f.d #8 ENSGT00390000015958.d ENSGT00940000155800.a.a #9 ENSGT00950000183137.b.a #10 ENSGT00940000160460 #11 ENSGT00940000157235 #12 ENSGT00940000158985 #13 ENSGT00950000182924.A.b.a.b #14 ENSGT00950000183054.a.a.a.a #15 ENSGT00950000183027.b.b #16 ENSGT00940000156337.c #17 ENSGT00940000153617.B #18 ENSGT00940000155804.k.a #19 ENSGT00530000063790.b #20 ENSGT00940000155586.B #21 ENSGT00940000155527.j.a #22 ENSGT00990000203806 #23 ENSGT00940000154658.a #24 ENSGT00390000017010 #25 ENSGT00940000156823.e #26 ENSGT00510000047770.c.b #27 ENSGT00940000160640 #28 ENSGT00800000124172.i #29 ENSGT00940000159617 #30 ENSGT00390000017890.b.b #31 ENSGT00940000157146.a.a #32 ENSGT00940000161036.A.e #33 ENSGT00530000063854 #34 ENSGT01070000253822.D.b #35 ENSGT00540000073610.B #36 ENSGT00940000156393.a.a #37 Pseudocrenilabrinae_A ANCESTRAL SPECIES 23 ENSGT00940000165054.C.f.d #8 ENSGT00390000015958.d ENSGT00940000155800.a.a #9 ENSGT00950000183137.b.a #10 ENSGT00940000160460 #11 ENSGT00940000157235 #12 ENSGT00940000158985 #13 ENSGT00950000182924.A.b.a.b #14 ENSGT00950000183054.a.a.a.a #15 ENSGT00950000183027.b.b #16 ENSGT00940000156337.c #17 ENSGT00940000153617.B #18 ENSGT00940000155804.k.a #19 ENSGT00530000063790.b #20 ENSGT00940000155586.B #21 ENSGT00940000155527.j.a #22 ENSGT00990000203806 #23 ENSGT00940000154658.a #24 ENSGT00390000017010 #25 ENSGT00940000156823.e #26 ENSGT00510000047770.c.b #27 ENSGT00940000160640 #28 ENSGT00800000124172.i #29 ENSGT00940000159617 #30 ENSGT00390000017890.b.b #31 ENSGT00940000157146.a.a #32 ENSGT00940000161036.A.e #33 ENSGT00530000063854 #34 ENSGT01070000253822.D.b #35 ENSGT00540000073610.B #36 ENSGT00940000156393.a.a #37 Haplochromini ANCESTRAL SPECIES 31 ENSGT00940000165054.C.f.d #8 ENSGT00390000015958.d ENSGT00940000155800.a.a #9 ENSGT00950000183137.b.a #10 ENSGT00940000160460 #11 ENSGT00940000157235 #12 ENSGT00940000158985 #13 ENSGT00950000182924.A.b.a.b #14 ENSGT00950000183054.a.a.a.a #15 ENSGT00950000183027.b.b #16 ENSGT00940000156337.c #17 ENSGT00940000153617.B #18 ENSGT00940000155804.k.a #19 ENSGT00530000063790.b #20 ENSGT00940000155586.B #21 ENSGT00940000155527.j.a #22 ENSGT00990000203806 #23 ENSGT00940000154658.a #24 ENSGT00390000017010 #25 ENSGT00940000156823.e #26 ENSGT00510000047770.c.b #27 ENSGT00940000160640 #28 ENSGT00800000124172.i #29 ENSGT00940000159617 #30 ENSGT00390000017890.b.b #31 ENSGT00940000157146.a.a #32 ENSGT00940000161036.A.e #33 ENSGT00530000063854 #34 ENSGT01070000253822.D.b #35 ENSGT00540000073610.B #36 ENSGT00940000156393.a.a #37 Haplochromini_A ANCESTRAL SPECIES 35 ENSGT00940000165054.C.f.d #8 ENSGT00390000015958.d ENSGT00940000155800.a.a #9 ENSGT00950000183137.b.a #10 ENSGT00940000160460 #11 ENSGT00940000157235 #12 ENSGT00940000158985 #13 ENSGT00950000182924.A.b.a.b #14 ENSGT00950000183054.a.a.a.a #15 ENSGT00950000183027.b.b #16 ENSGT00940000156337.c #17 ENSGT00940000153617.B #18 ENSGT00940000155804.k.a #19 ENSGT00530000063790.b #20 ENSGT00940000155586.B #21 ENSGT00940000155527.j.a #22 ENSGT00990000203806 #23 ENSGT00940000154658.a #24 ENSGT00390000017010 #25 ENSGT00940000156823.e #26 ENSGT00510000047770.c.b #27 ENSGT00940000160640 #28 ENSGT00800000124172.i #29 ENSGT00940000159617 #30 ENSGT00390000017890.b.b #31 ENSGT00940000157146.a.a #32 ENSGT00940000161036.A.e #33 ENSGT00530000063854 #34 ENSGT01070000253822.D.b #35 ENSGT00540000073610.B #36 ENSGT00940000156393.a.a #37 Haplochromini_B ANCESTRAL SPECIES 25 ENSGT00940000165054.C.f.c.a.a.a #7 ENSGT00390000015958.d ENSGT00940000155800.a.a #9 ENSGT00950000183137.b.a #10 ENSGT00940000160460 #11 ENSGT00940000157235 #12 ENSGT00940000158985 #13 ENSGT00950000182924.A.b.a.b #14 ENSGT00950000183054.a.a.a.a #15 ENSGT00950000183027.b.b #16 ENSGT00940000156337.c #17 ENSGT00940000153617.B #18 ENSGT00940000155804.k.a #19 ENSGT00530000063790.b #20 ENSGT00940000155586.B #21 ENSGT00940000155527.j.a #22 ENSGT00990000203806 #23 ENSGT00940000154658.a #24 ENSGT00390000017010 #25 ENSGT00940000156823.e #26 ENSGT00510000047770.c.b #27 ENSGT00940000160640 #28 ENSGT00800000124172.i #29 ENSGT00940000159617 #30 ENSGT00390000017890.b.b #31 ENSGT00940000157146.a.a #32 ENSGT00940000161036.A.e #33 ENSGT00530000063854 #34 ENSGT01070000253822.D.b #35 ENSGT00540000073610.B #36 ENSGT00940000156393.a.a #37 Eastern happy MODERN SPECIES 15 ENSACLG00000000737 #7 ENSACLG00000000749 #8 ENSACLG00000000765 #9 PPARGC1A (ENSACLG00000001002) #10 gba3 (ENSACLG00000001126) #11 ADGRA3 (ENSACLG00000001140) #12 KCNIP4 (ENSACLG00000001315) #13 sec24d (ENSACLG00000001362) #14 ENSACLG00000001403 #15 myoz2a (ENSACLG00000001413) #16 USP53 (ENSACLG00000001439) #17 PTPRD (ENSACLG00000001550) #18 TYRP1 (ENSACLG00000001942) #19 LURAP1L (ENSACLG00000001998) #20 MPDZ (ENSACLG00000002011) #21 ADGRL3 (ENSACLG00000002240) #22 ENSACLG00000002311 #23 ENSACLG00000002328 #24 CAAP1 (ENSACLG00000002613) #25 elavl2 (ENSACLG00000002715) #26 ENSACLG00000002778 #27 DMRTA1 (ENSACLG00000002823) #28 FABP2 (ENSACLG00000002847) #29 RBPMS (ENSACLG00000002926) #30 ENSACLG00000002952 #31 SGCZ (ENSACLG00000003007) #32 ENSACLG00000003019 #33 mfsd8 (ENSACLG00000003047) #34 ENSACLG00000003069 #35 ENSACLG00000003117 #36 ENSACLG00000003125 #37 Zebra mbuna MODERN SPECIES 1106 ENSMZEG00005001757 #9 PPARGC1A (ENSMZEG00005001739) #10 ENSMZEG00005001709 gba3 (ENSMZEG00005001698) #11 ADGRA3 (ENSMZEG00005001689) #12 KCNIP4 (ENSMZEG00005001667) #13 sec24d (ENSMZEG00005001595) #14 ENSMZEG00005001547 #15 myoz2a (ENSMZEG00005001520) #16 USP53 (ENSMZEG00005001507) #17 PTPRD (ENSMZEG00005001243) #18 ENSMZEG00005001208 TYRP1 (ENSMZEG00005001187) #19 LURAP1L (ENSMZEG00005001183) #20 MPDZ (ENSMZEG00005001094) #21 ADGRL3 (ENSMZEG00005001028) #22 ENSMZEG00005000817 #24 CAAP1 (ENSMZEG00005000801) #25 elavl2 (ENSMZEG00005000778) #26 ENSMZEG00005000772 #27 DMRTA1 (ENSMZEG00005000752) #28 FABP2 (ENSMZEG00005000743) #29 RBPMS (ENSMZEG00005000698) #30 ENSMZEG00005000647 #31 SGCZ (ENSMZEG00005000612) #32 ENSMZEG00005000585 #33 mfsd8 (ENSMZEG00005000569) #34 ENSMZEG00005000528 #35 ENSMZEG00005000495 #36 ENSMZEG00005000478 #37 cldnd1a (ENSMZEG00005000455) P. nyererei MODERN SPECIES 421 ENSPNYG00000006753 #8 ccdc149a (ENSPNYG00000006765) ENSPNYG00000006790 #9 PPARGC1A (ENSPNYG00000006846) #10 gba3 (ENSPNYG00000006891) #11 ADGRA3 (ENSPNYG00000006906) #12 KCNIP4 (ENSPNYG00000006925) #13 sec24d (ENSPNYG00000006950) #14 ENSPNYG00000006966 #15 myoz2a (ENSPNYG00000006977) #16 ENSPNYG00000007004 #17 PTPRD (ENSPNYG00000007040) #18 TYRP1 (ENSPNYG00000007139) #19 LURAP1L (ENSPNYG00000007165) #20 MPDZ (ENSPNYG00000007185) #21 ADGRL3 (ENSPNYG00000007344) #22 Burton s mouthbrooder MODERN SPECIES 393 TYRP1 (ENSHBUG00000006209) #19 LURAP1L (ENSHBUG00000001020) #20 MPDZ (ENSHBUG00000006186) #21 ADGRL3 (ENSHBUG00000006141) #22 ENSHBUG00000006091 #23 ENSHBUG00000006066 #24 CAAP1 (ENSHBUG00000005978) #25 elavl2 (ENSHBUG00000005968) #26 ENSHBUG00000005942 #27 DMRTA1 (ENSHBUG00000000928) #28 FABP2 (ENSHBUG00000005917) #29 RBPMS (ENSHBUG00000005888) #30 ENSHBUG00000005870 #31 ENSHBUG00000005832 ##32 Lyretail cichlid MODERN SPECIES 446 ADGRL3 (ENSNBRG00000009989) #22 ENSNBRG00000010023 #24 ENSNBRG00000010113 CAAP1 (ENSNBRG00000010153) #25 elavl2 (ENSNBRG00000010284) #26 ENSNBRG00000010299 #27 DMRTA1 (ENSNBRG00000010312) #28 FABP2 (ENSNBRG00000010321) #29 ENSNBRG00000010333 #31 SGCZ (ENSNBRG00000010366) #32 mfsd8 (ENSNBRG00000010425) #34 ENSNBRG00000010487 #35 ENSNBRG00000010513 #36 ZFP91 (ENSNBRG00000010534) #37 Nile tilapia MODERN SPECIES 15 ENSONIG00000039847 #7 ccdc149a (ENSONIG00000028055) ENSONIG00000007642 #9 PPARGC1A (ENSONIG00000007635) #10 gba3 (ENSONIG00000007634) #11 ADGRA3 (ENSONIG00000036115) #12 KCNIP4 (ENSONIG00000041474) #13 sec24d (ENSONIG00000007619) #14 SYNPO2 (ENSONIG00000032796) #15 myoz2a (ENSONIG00000007614) #16 USP53 (ENSONIG00000007612) #17 PTPRD (ENSONIG00000007588) #18 TYRP1 (ENSONIG00000007584) #19 LURAP1L (ENSONIG00000007582) #20 MPDZ (ENSONIG00000007574) #21 ADGRL3 (ENSONIG00000007571) #22 ENSONIG00000028332 ENSONIG00000007557 #24 ENSONIG00000030865 #25 ENSONIG00000033798 elavl2 (ENSONIG00000007552) #26 ENSONIG00000038581 #27 ENSONIG00000040635 ENSONIG00000027429 FABP2 (ENSONIG00000007548) #29 RBPMS (ENSONIG00000007546) #30 ENSONIG00000007544 #31 SGCZ (ENSONIG00000007542) #32 ENSONIG00000007538 #33 mfsd8 (ENSONIG00000007537) #34 ENSONIG00000032206 ##35 Midas cichlid MODERN SPECIES 793 ccdc149a (ENSACIG00000009651) dhx15 (ENSACIG00000009701) ##9 PPARGC1A (ENSACIG00000009732) #10 gba3 (ENSACIG00000009785) #11 ADGRA3 (ENSACIG00000009827) #12 KCNIP4 (ENSACIG00000009882) #13 sec24d (ENSACIG00000009914) #14 SYNPO2 (ENSACIG00000010161) #15 myoz2a (ENSACIG00000010197) #16 USP53 (ENSACIG00000010321) #17 PTPRD (ENSACIG00000010385) #18 TYRP1 (ENSACIG00000010444) #19 LURAP1L (ENSACIG00000010470) #20 MPDZ (ENSACIG00000010482) #21 ADGRL3 (ENSACIG00000010583) #22 ENSACIG00000010635 #24 CAAP1 (ENSACIG00000010733) #25 elavl2 (ENSACIG00000010855) #26 ENSACIG00000011339 #27 DMRTA1 (ENSACIG00000011367) #28 FABP2 (ENSACIG00000011389) #29 RBPMS (ENSACIG00000011395) #30 ENSACIG00000011410 #31 SGCZ (ENSACIG00000011434) #32 ENSACIG00000011477 #33 mfsd8 (ENSACIG00000011553) #34 ENSACIG00000011583 #35 ENSACIG00000011601 #36 ZFP91 (ENSACIG00000011617) #37 Pomacentridae ANCESTRAL SPECIES 28 ENSGT00940000157294.d ENSGT00940000165054.C.f #8 ENSGT00390000015958.d ENSGT00940000155800.a.a #9 ENSGT00950000183137.b.a #10 ENSGT00940000160460 #11 ENSGT00940000157235 #12 ENSGT00940000158985 #13 ENSGT00950000182924.A.b.a.b #14 ENSGT00950000183054.a.a.a.a #15 ENSGT00950000183027.b.b #16 ENSGT00940000156337.c #17 ENSGT00940000153617.B #18 ENSGT00940000155804.k.a #19 ENSGT00530000063790.b #20 ENSGT00940000155527.j.a #22 ENSGT00990000203806 #23 ENSGT00940000154658.a.e #24 ENSGT00940000154658.a.f #24 ENSGT00390000017010 #25 ENSGT00940000156823.e #26 ENSGT00510000047770.c.b #27 ENSGT00940000160640 #28 ENSGT00800000124172.i #29 ENSGT00940000159617 #30 ENSGT00390000017890.b.b #31 ENSGT00940000157146.a.a #32 ENSGT00940000161036.A.e #33 ENSGT00530000063854 #34 ENSGT01070000253822.D.b #35 ENSGT00940000166038 Pomacentridae_A ANCESTRAL SPECIES 22 ENSGT00940000165054.C.f.b #8 ENSGT00390000015958.d ENSGT00940000155800.a.a #9 ENSGT00950000183137.b.a #10 ENSGT00940000160460 #11 ENSGT00940000157235 #12 ENSGT00940000158985 #13 ENSGT00950000182924.A.b.a.b #14 ENSGT00950000183054.a.a.a.a #15 ENSGT00950000183027.b.b #16 ENSGT00940000156337.c #17 ENSGT00940000153617.B #18 ENSGT00940000155804.k.a #19 ENSGT00530000063790.b #20 ENSGT00940000155586.B #21 ENSGT00940000155527.j.a #22 ENSGT00990000203806 #23 ENSGT00940000154658.a.f #24 ENSGT00390000017010 #25 ENSGT00940000156823.e #26 ENSGT00510000047770.c.b #27 ENSGT00940000160640 #28 ENSGT00800000124172.i #29 ENSGT00940000159617 #30 ENSGT00390000017890.b.b #31 ENSGT00940000157146.a.a #32 ENSGT00940000161036.A.e #33 ENSGT00530000063854 #34 ENSGT01070000253822.D.b #35 ENSGT01090000260059.a.b.b.b.a.d.a.b ENSGT00940000166038 Amphiprion ANCESTRAL SPECIES 96 ENSGT00390000015958.d ENSGT00940000155800.a.a #9 ENSGT00950000183137.b.a #10 ENSGT00940000160460 #11 ENSGT00940000157235 #12 ENSGT00940000162226.b ENSGT00940000158985 #13 ENSGT00950000182924.A.b.a.b #14 ENSGT00950000183054.a.a.a.a #15 ENSGT00950000183027.b.b #16 ENSGT00940000156337.c #17 ENSGT00940000153617.B #18 ENSGT00940000155804.k.a #19 ENSGT00530000063790.b #20 ENSGT00940000155586.B #21 ENSGT00940000155527.j.a #22 ENSGT00990000203806 #23 ENSGT00940000154658.a.f #24 ENSGT00390000017010 #25 ENSGT00940000156823.e #26 ENSGT00510000047770.c.b #27 ENSGT00940000160640 #28 ENSGT00800000124172.i #29 ENSGT00940000159617 #30 ENSGT00390000017890.b.b #31 ENSGT00940000157146.a.a #32 ENSGT00940000161036.A.e #33 ENSGT00530000063854 #34 ENSGT01070000253822.D.b #35 ENSGT01090000260059.a.b.b.b.a.d.a.b ENSGT00940000166038 Orange clownfish MODERN SPECIES 15 ENSAPEG00000022664 KCNIP4 (ENSAPEG00000022684) #13 sec24d (ENSAPEG00000022743) #14 ENSAPEG00000022778 #15 myoz2a (ENSAPEG00000022815) #16 USP53 (ENSAPEG00000022822) #17 PTPRD (ENSAPEG00000022919) #18 TYRP1 (ENSAPEG00000023168) #19 LURAP1L (ENSAPEG00000023192) #20 ENSAPEG00000023197 ##21 ENSAPEG00000023207 #21 ENSAPEG00000023222 #21 ENSAPEG00000023231 ##21 ENSAPEG00000023237 #21 ENSAPEG00000023255 #21 ADGRL3 (ENSAPEG00000023284) #22 ENSAPEG00000023314 ENSAPEG00000023327 ENSAPEG00000023340 #23 ENSAPEG00000023386 #24 CAAP1 (ENSAPEG00000023464) #25 elavl2 (ENSAPEG00000023474) #26 ENSAPEG00000023497 #27 DMRTA1 (ENSAPEG00000023525) #28 FABP2 (ENSAPEG00000023534) #29 RBPMS (ENSAPEG00000023543) #30 ENSAPEG00000023550 #31 SGCZ (ENSAPEG00000023566) #32 ENSAPEG00000023603 #33 mfsd8 (ENSAPEG00000023620) #34 ENSAPEG00000023637 #35 Clown anemonefish MODERN SPECIES 3582 ADGRA3 (ENSAOCG00000000992) #12 ENSAOCG00000014772 KCNIP4 (ENSAOCG00000014839) #13 sec24d (ENSAOCG00000014868) #14 ENSAOCG00000014874 #15 myoz2a (ENSAOCG00000014887) #16 USP53 (ENSAOCG00000014900) #17 PTPRD (ENSAOCG00000015122) #18 TYRP1 (ENSAOCG00000015186) #19 LURAP1L (ENSAOCG00000015194) #20 MPDZ (ENSAOCG00000015306) #21 ENSAOCG00000015340 ADGRL3 (ENSAOCG00000015401) #22 Spiny chromis MODERN SPECIES 1031 ADGRL3 (ENSAPOG00000015258) #22 ENSAPOG00000015279 #23 Bicolor damselfish MODERN SPECIES 1874 ENSSPAG00000012755 #22 ENSSPAG00000012738 #23 ENSSPAG00000012730 #24 Atherinomorphae ANCESTRAL SPECIES 22 ENSGT00940000165054.C.f #8 ENSGT00390000015958.d ENSGT00940000155800.a.a #9 ENSGT00950000183137.b.a #10 ENSGT00940000160460 #11 ENSGT00940000157235 #12 ENSGT00940000158985 #13 ENSGT00950000182924.A.b.a.b #14 ENSGT00950000183054.a.a.a.a #15 ENSGT00950000183027.b.b #16 ENSGT00940000156337.c #17 ENSGT00940000153617.B #18 ENSGT00940000155804.k.a #19 ENSGT00530000063790.b #20 ENSGT00940000155586.B #21 ENSGT00940000155527.j.a #22 ENSGT00980000202414 ENSGT00940000154658.a #24 ENSGT00390000017010 #25 ENSGT00940000156823.e #26 ENSGT00510000047770.c.b #27 ENSGT00940000160640 #28 ENSGT00800000124172.i #29 ENSGT00940000159617 #30 ENSGT00390000017890.b.b #31 ENSGT00940000157146.a.a #32 ENSGT00940000161036.A.e #33 ENSGT00530000063854 #34 ENSGT01070000253822.D.b #35 ENSGT00980000198603.A ENSGT00540000073610.B #36 Oryzias ANCESTRAL SPECIES 21 ENSGT00940000165054.C.f #8 ENSGT00390000015958.d ENSGT00940000155800.a.a #9 ENSGT00950000183137.b.a #10 ENSGT00940000160460 #11 ENSGT00940000157235 #12 ENSGT00940000158985 #13 ENSGT00950000182924.A.b.a.b #14 ENSGT00950000183054.a.a.a.a #15 ENSGT00950000183027.b.b #16 ENSGT00940000156337.c #17 ENSGT00940000153617.B #18 ENSGT00940000155804.k.a #19 ENSGT00530000063790.b #20 ENSGT00940000155586.B #21 ENSGT00940000155527.j.a #22 ENSGT00980000202414 ENSGT00940000154658.a #24 ENSGT00390000017010 #25 ENSGT00940000156823.e #26 ENSGT00510000047770.c.b #27 ENSGT00940000160640 #28 ENSGT00800000124172.i #29 ENSGT00940000159617 #30 ENSGT00390000017890.b.b #31 ENSGT00940000157146.a.a #32 ENSGT00940000159026 ENSGT00390000018729.b ENSGT00390000007726.b ENSGT01060000253413 ENSGT00390000002231.b Oryzias_b ANCESTRAL SPECIES 18 ENSGT00940000165054.C.f #8 ENSGT00390000015958.d ENSGT00940000155800.a.a #9 ENSGT00950000183137.b.a #10 ENSGT00940000160460 #11 ENSGT00940000157235 #12 ENSGT00940000158985 #13 ENSGT00950000182924.A.b.a.b #14 ENSGT00950000183054.a.a.a.a #15 ENSGT00950000183027.b.b #16 ENSGT00940000156337.c #17 ENSGT00940000153617.B #18 ENSGT00940000155804.k.a #19 ENSGT00530000063790.b #20 ENSGT00940000155586.B #21 ENSGT00940000155527.j.a #22 ENSGT00940000154658.a #24 ENSGT00390000017010 #25 ENSGT00940000156823.e #26 ENSGT00510000047770.c.b #27 ENSGT00940000160640 #28 ENSGT00800000124172.i #29 ENSGT00940000159617 #30 ENSGT00390000017890.b.b #31 ENSGT00940000157146.a.a #32 ENSGT00940000159026 ENSGT00390000018729.b ENSGT00390000007726.b ENSGT00940000163911.a.a.b.a.a.a.b.a.b ENSGT00940000163911.a.a.b.a.a.a.b.a.a ENSGT01040000240385.A.a.b.a Indian medaka MODERN SPECIES 19 ENSOMEG00000006152 #8 ccdc149a (ENSOMEG00000006119) ENSOMEG00000006075 #9 PPARGC1A (ENSOMEG00000000670) #10 gba3 (ENSOMEG00000005946) #11 ADGRA3 (ENSOMEG00000005915) #12 KCNIP4 (ENSOMEG00000005776) #13 sec24d (ENSOMEG00000005678) #14 ENSOMEG00000005638 #15 myoz2a (ENSOMEG00000005628) #16 ENSOMEG00000005608 #17 PTPRD (ENSOMEG00000005568) #18 TYRP1 (ENSOMEG00000005449) #19 LURAP1L (ENSOMEG00000005431) #20 MPDZ (ENSOMEG00000005411) #21 ADGRL3 (ENSOMEG00000005355) #22 ENSOMEG00000005308 #24 CAAP1 (ENSOMEG00000005226) #25 elavl2 (ENSOMEG00000005178) #26 ENSOMEG00000005141 #27 ENSOMEG00000005083 #29 DMRTA1 (ENSOMEG00000005064) #28 RBPMS (ENSOMEG00000005044) #30 ENSOMEG00000004999 #31 SGCZ (ENSOMEG00000004970) #32 syt4 (ENSOMEG00000004955) ENSOMEG00000004934 ENSOMEG00000004901 ENSOMEG00000004862 ENSOMEG00000004842 ENSOMEG00000004825 Javanese ricefish MODERN SPECIES 9 ENSOJAG00000013236 #8 ccdc149a (ENSOJAG00000013251) ENSOJAG00000013382 #9 PPARGC1A (ENSOJAG00000013648) #10 gba3 (ENSOJAG00000013665) #11 ADGRA3 (ENSOJAG00000013743) #12 KCNIP4 (ENSOJAG00000014582) #13 sec24d (ENSOJAG00000014803) #14 SYNPO2 (ENSOJAG00000017001) #15 myoz2a (ENSOJAG00000017040) #16 USP53 (ENSOJAG00000017053) #17 PTPRD (ENSOJAG00000017841) #18 ENSOJAG00000023091 TYRP1 (ENSOJAG00000023096) #19 LURAP1L (ENSOJAG00000023101) #20 ADGRL3 (ENSOJAG00000023481) #22 ENSOJAG00000023853 #24 ENSOJAG00000023915 CAAP1 (ENSOJAG00000023918) #25 elavl2 (ENSOJAG00000023923) #26 ENSOJAG00000023928 #27 DMRTA1 (ENSOJAG00000023929) #28 ENSOJAG00000023932 #29 RBPMS (ENSOJAG00000023935) #30 DCTN6 (ENSOJAG00000023939) #31 SGCZ (ENSOJAG00000023942) #32 syt4 (ENSOJAG00000023949) ENSOJAG00000023952 ENSOJAG00000023959 ENSOJAG00000023963 ENSOJAG00000023968 Oryzias_a ANCESTRAL SPECIES 27 ENSGT00940000165054.C.f #8 ENSGT00390000015958.d ENSGT00940000155800.a.a #9 ENSGT00950000183137.b.a #10 ENSGT00940000160460 #11 ENSGT00940000157235 #12 ENSGT00940000158985 #13 ENSGT00950000182924.A.b.a.b #14 ENSGT00950000183054.a.a.a.a #15 ENSGT00950000183027.b.b #16 ENSGT00940000156337.c #17 ENSGT00940000153617.B #18 ENSGT00940000155804.k.a #19 ENSGT00530000063790.b #20 ENSGT00940000155586.B #21 ENSGT00940000155527.j.a #22 ENSGT00980000202414 ENSGT00940000154658.a.g #24 ENSGT00940000154658.a.h #24 ENSGT00390000017010 #25 ENSGT00940000156823.e #26 ENSGT00510000047770.c.b #27 ENSGT00940000160640 #28 ENSGT00800000124172.i #29 ENSGT00940000159617 #30 ENSGT00390000017890.b.b #31 ENSGT00940000157146.a.a #32 ENSGT00940000159026 ENSGT00390000018729.b ENSGT00390000007726.b ENSGT00940000174504.B Japanese Medaka HdrR MODERN SPECIES 9 ENSORLG00000004819 #9 PPARGC1A (ENSORLG00000004788) #10 gba3 (ENSORLG00000004780) #11 ADGRA3 (ENSORLG00000004767) #12 ENSORLG00000023209 KCNIP4 (ENSORLG00000004748) #13 sec24d (ENSORLG00000004729) #14 SYNPO2 (ENSORLG00000028437) #15 myoz2a (ENSORLG00000025044) #16 USP53 (ENSORLG00000004686) #17 ENSORLG00000022754 PTPRD (ENSORLG00000004650) #18 TYRP1 (ENSORLG00000004326) #19 LURAP1L (ENSORLG00000028081) #20 MPDZ (ENSORLG00000004290) #21 ADGRL3 (ENSORLG00000004254) #22 ENSORLG00000023983 ENSORLG00000028831 #24 ENSORLG00000027686 #24 CAAP1 (ENSORLG00000004231) #25 ENSORLG00000022241 ELAVL2 (ENSORLG00000004217) #26 ENSORLG00000027845 ENSORLG00000004157 #27 DMRTA1 (ENSORLG00000004153) #28 ENSORLG00000004146 #29 RBPMS (ENSORLG00000004135) #30 ENSORLG00000026244 #31 ENSORLG00000004115 #32 syt4 (ENSORLG00000004098) ENSORLG00000023575 Chinese medaka MODERN SPECIES 966 PTPRD (ENSOSIG00000016986) #18 TYRP1 (ENSOSIG00000019473) #19 LURAP1L (ENSOSIG00000019476) #20 MPDZ (ENSOSIG00000019487) #21 ADGRL3 (ENSOSIG00000019758) #22 ENSOSIG00000023262 ENSOSIG00000023318 #24 Cyprinodontiformes ANCESTRAL SPECIES 22 ENSGT00940000165054.C.f #8 ENSGT00390000015958.d ENSGT00940000155800.a.a #9 ENSGT00950000183137.b.a #10 ENSGT00940000160460 #11 ENSGT00940000157235 #12 ENSGT00940000158985 #13 ENSGT00950000182924.A.b.a.b #14 ENSGT00950000183054.a.a.a.a #15 ENSGT00950000183027.b.b #16 ENSGT00940000156337.c #17 ENSGT00940000153617.B #18 ENSGT00940000155804.k.a #19 ENSGT00530000063790.b #20 ENSGT00940000155586.B #21 ENSGT00940000155527.j.a #22 ENSGT00940000154658.a #24 ENSGT00390000017010 #25 ENSGT00940000156823.e #26 ENSGT00510000047770.c.b #27 ENSGT00940000160640 #28 ENSGT00800000124172.i #29 ENSGT00940000159617 #30 ENSGT00390000017890.b.b #31 ENSGT00940000157146.a.a #32 ENSGT00940000161036.A.e #33 ENSGT00530000063854 #34 ENSGT01070000253822.D.b #35 ENSGT00980000198603.A ENSGT00540000073610.B #36 ENSGT00650000093871 Cyprinodontoidei ANCESTRAL SPECIES 21 ENSGT00940000165054.C.f #8 ENSGT00390000015958.d ENSGT00940000155800.a.a #9 ENSGT00950000183137.b.a #10 ENSGT00940000160460 #11 ENSGT00940000157235 #12 ENSGT00940000158985 #13 ENSGT00950000182924.A.b.a.b #14 ENSGT00950000183054.a.a.a.a #15 ENSGT00950000183027.b.b #16 ENSGT00940000156337.c #17 ENSGT00940000153617.B #18 ENSGT00940000155804.k.a #19 ENSGT00530000063790.b #20 ENSGT00940000155586.B #21 ENSGT00940000155527.j.a #22 ENSGT00940000154658.a #24 ENSGT00390000017010 #25 ENSGT00940000156823.e #26 ENSGT00510000047770.c.b #27 ENSGT00940000160640 #28 ENSGT00800000124172.i #29 ENSGT00940000159617 #30 ENSGT00390000017890.b.b #31 ENSGT00940000157146.a.a #32 ENSGT00940000161036.A.e #33 ENSGT00530000063854 #34 ENSGT01070000253822.D.b #35 ENSGT00980000198603.A ENSGT00540000073610.B #36 ENSGT00650000093871 Poeciliinae ANCESTRAL SPECIES 21 ENSGT00650000094787 ENSGT00390000015958.d ENSGT00940000155800.a.a #9 ENSGT00950000183137.b.a #10 ENSGT00940000160460 #11 ENSGT00940000157235 #12 ENSGT00940000158985 #13 ENSGT00950000182924.A.b.a.b #14 ENSGT00950000183054.a.a.a.a #15 ENSGT00950000183027.b.b #16 ENSGT00940000156337.c #17 ENSGT00940000153617.B #18 ENSGT00940000155804.k.a #19 ENSGT00530000063790.b #20 ENSGT00940000155586.B #21 ENSGT00940000155527.j.a #22 ENSGT00940000154658.a #24 ENSGT00390000017010 #25 ENSGT00940000156823.e #26 ENSGT00510000047770.c.b #27 ENSGT00940000160640 #28 ENSGT00800000124172.i #29 ENSGT00940000159617 #30 ENSGT00390000017890.b.b #31 ENSGT00940000157146.a.a #32 ENSGT00940000161036.A.e #33 ENSGT00530000063854 #34 ENSGT01070000253822.D.b.q.b #35 ENSGT01070000253822.D.b.q.a.b #35 ENSGT01070000253822.D.b.q.a.a #35 ENSGT00980000198603.A Poecilia ANCESTRAL SPECIES 48 ENSGT00650000094787 ENSGT00390000015958.d ENSGT00940000155800.a.a #9 ENSGT00950000183137.b.a #10 ENSGT00940000160460 #11 ENSGT00940000157235 #12 ENSGT00940000158985 #13 ENSGT00950000182924.A.b.a.b #14 ENSGT00950000183054.a.a.a.a #15 ENSGT00950000183027.b.b #16 ENSGT00940000156337.c #17 ENSGT00940000153617.B #18 ENSGT00940000155804.k.a #19 ENSGT00530000063790.b #20 ENSGT00940000155586.B #21 ENSGT00940000155527.j.a #22 ENSGT00940000154658.a #24 ENSGT00390000017010 #25 ENSGT00940000156823.e #26 ENSGT00510000047770.c.b.a #27 ENSGT00940000160640 #28 ENSGT00800000124172.i #29 ENSGT00940000159617 #30 ENSGT00390000017890.b.b #31 ENSGT00940000157146.a.a #32 ENSGT00940000161036.A.e #33 ENSGT00530000063854 #34 ENSGT01070000253822.D.b.q.b #35 ENSGT01070000253822.D.b.q.a.a.a.a.a #35 ENSGT01070000253822.D.b.q.a.b #35 ENSGT01070000253822.D.b.q.a.a.a.b #35 NAME_6 ANCESTRAL SPECIES 398 ENSGT00940000155804.k.a #19 ENSGT00530000063790.b #20 ENSGT00940000155586.B #21 ENSGT00940000155527.j.a #22 ENSGT00940000154658.a #24 ENSGT00390000017010 #25 ENSGT00940000156823.e #26 ENSGT00510000047770.c.b.b #27 Amazon molly MODERN SPECIES 407 ENSPFOG00000000977 TYRP1 (ENSPFOG00000001047) #19 LURAP1L (ENSPFOG00000001165) #20 MPDZ (ENSPFOG00000001361) #21 ADGRL3 (ENSPFOG00000001870) #22 ENSPFOG00000002397 #24 CAAP1 (ENSPFOG00000003391) #25 ELAVL2 (ENSPFOG00000003436) #26 ENSPFOG00000003500 #27 Sailfin molly MODERN SPECIES 602 ADGRL3 (ENSPLAG00000001195) #22 Guppy MODERN SPECIES 448 ENSPREG00000019297 ccdc149a (ENSPREG00000019271) ENSPREG00000019256 #9 PPARGC1A (ENSPREG00000019171) #10 gba3 (ENSPREG00000019133) #11 ADGRA3 (ENSPREG00000019098) #12 KCNIP4 (ENSPREG00000018931) #13 sec24d (ENSPREG00000018869) #14 ENSPREG00000018845 #15 myoz2a (ENSPREG00000018830) #16 USP53 (ENSPREG00000018805) #17 PTPRD (ENSPREG00000018440) #18 TYRP1 (ENSPREG00000018301) #19 LURAP1L (ENSPREG00000018293) #20 ENSPREG00000017839 #21 ADGRL3 (ENSPREG00000017398) #22 ENSPREG00000017212 #24 CAAP1 (ENSPREG00000017188) #25 elavl2 (ENSPREG00000017160) #26 ENSPREG00000017063 #27 DMRTA1 (ENSPREG00000017021) #28 FABP2 (ENSPREG00000016995) #29 RBPMS (ENSPREG00000016959) #30 DCTN6 (ENSPREG00000016932) #31 SGCZ (ENSPREG00000016904) #32 ENSPREG00000016861 #33 mfsd8 (ENSPREG00000016815) #34 ENSPREG00000016791 #35 ENSPREG00000016765 #35 ENSPREG00000016690 #35 ENSPREG00000016666 Platyfish MODERN SPECIES 5 dhx15 (ENSXMAG00000008425) #9 PPARGC1A (ENSXMAG00000007748) #10 gba3 (ENSXMAG00000007766) #11 ADGRA3 (ENSXMAG00000007771) #12 KCNIP4 (ENSXMAG00000001979) #13 sec24d (ENSXMAG00000001944) #14 ENSXMAG00000001940 #15 myoz2a (ENSXMAG00000023576) #16 USP53 (ENSXMAG00000021530) #17 PTPRD (ENSXMAG00000004920) #18 ENSXMAG00000028029 TYRP1 (ENSXMAG00000004910) #19 LURAP1L (ENSXMAG00000004908) #20 ENSXMAG00000027724 MPDZ (ENSXMAG00000004907) #21 ADGRL3 (ENSXMAG00000004882) #22 ENSXMAG00000004781 #24 CAAP1 (ENSXMAG00000022303) #25 ELAVL2 (ENSXMAG00000029211) #26 ENSXMAG00000021716 #27 DMRTA1 (ENSXMAG00000012522) #28 FABP2 (ENSXMAG00000027561) #29 RBPMS (ENSXMAG00000027637) #30 DCTN6 (ENSXMAG00000012493) #31 SGCZ (ENSXMAG00000012490) #32 mfsd8 (ENSXMAG00000012556) #34 ENSXMAG00000021162 #35 ENSXMAG00000012545 #35 ENSXMAG00000012542 #36 ENSXMAG00000012538 #36 ENSXMAG00000026245 NAME_4 ANCESTRAL SPECIES 512 ENSGT00940000155527.j.a #22 ENSGT00940000154658.a #24 ENSGT00390000017010 #25 Mummichog MODERN SPECIES 2406 TYRP1 (ENSFHEG00000003082) #19 LURAP1L (ENSFHEG00000000611) #20 MPDZ (ENSFHEG00000003047) #21 ENSFHEG00000002996 ENSFHEG00000002960 ADGRL3 (ENSFHEG00000002945) #22 ENSFHEG00000002892 #24 Sheepshead minnow MODERN SPECIES 414 TYRP1 (ENSCVAG00000003071) #19 LURAP1L (ENSCVAG00000003078) #20 MPDZ (ENSCVAG00000000695) #21 ENSCVAG00000003218 ADGRL3 (ENSCVAG00000003326) #22 ENSCVAG00000003342 ##24 ENSCVAG00000003346 Aplocheiloidei ANCESTRAL SPECIES 65 ENSGT00940000157294.d ENSGT00390000015958.d ENSGT00940000155800.a.a #9 ENSGT00950000183137.b.a #10 ENSGT00940000160460 #11 ENSGT00940000157235 #12 ENSGT00940000158985 #13 ENSGT00950000182924.A.b.a.b #14 ENSGT00950000183054.a.a.a.a #15 ENSGT00950000183027.b.b #16 ENSGT00940000156337.c #17 ENSGT00940000153617.B #18 ENSGT00940000155804.k.a #19 ENSGT00530000063790.b #20 ENSGT00940000155586.B #21 ENSGT00940000155527.j.a #22 ENSGT00940000154658.a #24 ENSGT00390000017010 #25 ENSGT00940000156823.e #26 ENSGT00510000047770.c.b #27 ENSGT00940000160640 #28 ENSGT00800000124172.i #29 ENSGT00940000159617 #30 ENSGT00390000017890.b.b #31 ENSGT00940000157146.a.a #32 ENSGT00940000161036.A.e #33 ENSGT00530000063854 #34 ENSGT01070000253822.D.b #35 ENSGT00540000073610.B #36 Turquoise killifish MODERN SPECIES 1613 ENSNFUG00015023290 #17 ENSNFUG00015023288 #17 ENSNFUG00015023287 ENSNFUG00015023285 ENSNFUG00015023284 ENSNFUG00015023282 PTPRD (ENSNFUG00015006628) #18 ENSNFUG00015005452 ENSNFUG00015005449 ENSNFUG00015005437 TYRP1 (ENSNFUG00015005425) #19 LURAP1L (ENSNFUG00015005421) #20 MPDZ (ENSNFUG00015004270) #21 ENSNFUG00015004062 ENSNFUG00015004059 LPHN3 (ENSNFUG00015002277) #22 ENSNFUG00015000803 #24 FP236812.4 (ENSNFUG00015000426) #25 ENSNFUG00015000422 ENSNFUG00015000419 ENSNFUG00015000415 elavl2 (ENSNFUG00015000395) #26 PRKCSH (ENSNFUG00015000360) #27 DMRTA1 (ENSNFUG00015000348) #28 FABP2 (ENSNFUG00015000342) #29 RBPMS (ENSNFUG00015000331) #30 DCTN6 (ENSNFUG00015000312) #31 SGCZ (ENSNFUG00015000297) #32 ZNF438 (ENSNFUG00015000285) ENSNFUG00015000281 BX470141.1 (ENSNFUG00015000266) Mangrove rivulus MODERN SPECIES 29 ENSKMAG00000005335 #9 PPARGC1A (ENSKMAG00000005390) #10 ENSKMAG00000005471 gba3 (ENSKMAG00000005482) #11 ADGRA3 (ENSKMAG00000005518) #12 KCNIP4 (ENSKMAG00000005612) #13 ENSKMAG00000005659 sec24d (ENSKMAG00000005695) #14 ENSKMAG00000005720 #15 myoz2a (ENSKMAG00000005757) #16 USP53 (ENSKMAG00000005777) #17 PTPRD (ENSKMAG00000005817) #18 TYRP1 (ENSKMAG00000005890) #19 LURAP1L (ENSKMAG00000005922) #20 MPDZ (ENSKMAG00000005956) #21 ADGRL3 (ENSKMAG00000006060) #22 ENSKMAG00000006133 #24 CAAP1 (ENSKMAG00000006286) #25 elavl2 (ENSKMAG00000006299) #26 ENSKMAG00000006331 #27 DMRTA1 (ENSKMAG00000006350) #28 ENSKMAG00000006358 #29 RBPMS (ENSKMAG00000006377) #30 SGCZ (ENSKMAG00000006407) #32 ENSKMAG00000006468 #33 mfsd8 (ENSKMAG00000006512) #34 ENSKMAG00000006564 #35 ENSKMAG00000006583 #36