Pecora	ANCESTRAL SPECIES	24	ENSGT00940000158904	ENSGT00940000160209.e	ENSGT00390000010523.c.b	ENSGT00390000009987	ENSGT00930000150980.a #7	ENSGT00940000155515.a.b.b.l #8	ENSGT00940000157055 #10	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #25	ENSGT00940000158539 #26	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #28	ENSGT00390000016542 #29	ENSGT00940000157233 #30	ENSGT00950000183208.A.c.a #33	ENSGT00900000143214	ENSGT00390000006631 #34	ENSGT00950000182860.a.b.b #35	ENSGT00390000008033 #37	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555
Percora_a	ANCESTRAL SPECIES	5	ENSGT00940000158904	ENSGT00940000160209.e	ENSGT00390000010523.c.b	ENSGT00390000009987	ENSGT00930000150980.a #7	ENSGT00940000155515.a.b.b.l #8	ENSGT00940000157055 #10	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #25	ENSGT00940000158539 #26	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #28	ENSGT00390000016542 #29	ENSGT00940000157233 #30	ENSGT00950000183208.A.c.a #33	ENSGT00900000143214	ENSGT00390000006631 #34	ENSGT00950000182860.a.b.b #35	ENSGT00390000008033 #37	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555
Bovidae	ANCESTRAL SPECIES	8	ENSGT00940000158904	ENSGT00940000160209.e	ENSGT00390000010523.c.b	ENSGT00390000009987	ENSGT00930000150980.a #7	ENSGT00940000155515.a.b.b.l #8	ENSGT00940000157055 #10	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #25	ENSGT00940000158539 #26	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #28	ENSGT00390000016542 #29	ENSGT00940000157233 #30	ENSGT00950000183208.A.c.a #33	ENSGT00390000006631 #34	ENSGT00950000182860.a.b.b #35	ENSGT00390000008033 #37	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555	ENSGT00940000153272.a.b.z.a.a.a.b
Caprinae	ANCESTRAL SPECIES	5	ENSGT00940000171318	ENSGT00940000158904	ENSGT00390000010523.c.b	ENSGT00390000009987	ENSGT00930000150980.a #7	ENSGT00940000155515.a.b.b.l #8	ENSGT00940000157055 #10	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541.c #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #25	ENSGT00940000158539 #26	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #28	ENSGT00390000016542 #29	ENSGT00940000157233 #30	ENSGT00950000183208.A.c.a #33	ENSGT00390000006631 #34	ENSGT00950000182860.a.b.b #35	ENSGT00390000008033 #37	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555	ENSGT00940000153272.a.b.z.a.a.a.b
Goat	MODERN SPECIES	11	PRPF40A (ENSCHIG00000011660) #7	FMNL2 (ENSCHIG00000026934) #8	ENSCHIG00000010047 #9	STAM2 (ENSCHIG00000020598) #10	ENSCHIG00000022060 #11	CACNB4 (ENSCHIG00000013367) #12	ARL5A (ENSCHIG00000025329) #13	NEB (ENSCHIG00000014281) #14	RIF1 (ENSCHIG00000020327) #15	TNFAIP6 (ENSCHIG00000013151) #16	NMI (ENSCHIG00000025341) #17	RBM43 (ENSCHIG00000019526) #18	RND3 (ENSCHIG00000022258) #19	ENSCHIG00000010348 #20	ENSCHIG00000020042 #21	MMADHC (ENSCHIG00000026029) #22	LYPD6 (ENSCHIG00000018947) #23	ENSCHIG00000026876 #24	LYPD6B (ENSCHIG00000014675) #25	KIF5C (ENSCHIG00000012226) #26	EPC2 (ENSCHIG00000024313) #27	MBD5 (ENSCHIG00000008638) #28	ORC4 (ENSCHIG00000023781) #29	ACVR2A (ENSCHIG00000013353) #30	ENSCHIG00000026414 #31	ENSCHIG00000012606 #32	ZEB2 (ENSCHIG00000020961) #33	GTDC1 (ENSCHIG00000022649) #34	ARHGAP15 (ENSCHIG00000014079) #35	ENSCHIG00000024301 #36	KYNU (ENSCHIG00000025717) #37
Rambouillet Sheep	MODERN SPECIES	11	ARL6IP6 (ENSOARG00020022563)	PRPF40A (ENSOARG00020022598) #7	FMNL2 (ENSOARG00020023016) #8	ENSOARG00020023393	STAM2 (ENSOARG00020023418) #10	CACNB4 (ENSOARG00020023560) #12	ARL5A (ENSOARG00020024180) #13	NEB (ENSOARG00020024247) #14	RIF1 (ENSOARG00020024396) #15	TNFAIP6 (ENSOARG00020024645) #16	NMI (ENSOARG00020024663) #17	RBM43 (ENSOARG00020024693) #18	ENSOARG00020024716 ##19	ENSOARG00020024723	RND3 (ENSOARG00020024731) #19	MMADHC (ENSOARG00020024756) #22	LYPD6 (ENSOARG00020024772) #23	LYPD6B (ENSOARG00020024784) #25	KIF5C (ENSOARG00020024809) #26	EPC2 (ENSOARG00020024888) #27	MBD5 (ENSOARG00020024911) #28	ORC4 (ENSOARG00020024976) #29	ACVR2A (ENSOARG00020025027) #30	ZEB2 (ENSOARG00020025087) #33	ARHGAP15 (ENSOARG00020025262) #35	KYNU (ENSOARG00020005939) #37	LRP1B (ENSOARG00020006148)	ENSOARG00020011176	NXPH2 (ENSOARG00020011226)	SPOPL (ENSOARG00020011256)	ENSOARG00020011354
Bovinae	ANCESTRAL SPECIES	5	ENSGT00940000160209.e	ENSGT00390000010523.c.b	ENSGT00390000009987	ENSGT00930000150980.a #7	ENSGT00940000155515.a.b.b.l #8	ENSGT00390000018085.a.b.b	ENSGT00940000157055 #10	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #25	ENSGT00940000158539 #26	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #28	ENSGT01100000264677	ENSGT00390000016542 #29	ENSGT00940000157233 #30	ENSGT00510000047245.w.a.b	ENSGT00950000183208.A.c.a #33	ENSGT00390000006631 #34	ENSGT00950000182860.a.b.b #35	ENSGT00390000008033 #37	ENSGT00900000142862	ENSGT00940000157521.b
American bison	MODERN SPECIES	3062	ENSBBBG00000013139	ARL6IP6 (ENSBBBG00000013147)	PRPF40A (ENSBBBG00000013168) #7	ENSBBBG00000002660 #8	ENSBBBG00000007404	STAM2 (ENSBBBG00000013190) #10	CACNB4 (ENSBBBG00000014165) #12	ARL5A (ENSBBBG00000014197) #13	ENSBBBG00000014203	NEB (ENSBBBG00000003376) #14	RIF1 (ENSBBBG00000014704) #15	TNFAIP6 (ENSBBBG00000014725) #16	NMI (ENSBBBG00000014748) #17	RBM43 (ENSBBBG00000014755) #18	RND3 (ENSBBBG00000014767) #19	MMADHC (ENSBBBG00000007940) #22	LYPD6 (ENSBBBG00000003640) #23	LYPD6B (ENSBBBG00000014801) #25	KIF5C (ENSBBBG00000014835) #26	EPC2 (ENSBBBG00000003658) #27	MBD5 (ENSBBBG00000002808) #28	ENSBBBG00000014898	ORC4 (ENSBBBG00000001184) #29	ACVR2A (ENSBBBG00000001138) #30	ENSBBBG00000001115	ENSBBBG00000001101
Bos	ANCESTRAL SPECIES	6	ENSGT00390000010523.c.b	ENSGT00390000007818.e.b.b	ENSGT00390000009987	ENSGT00930000150980.a #7	ENSGT00940000155515.a.b.b.l #8	ENSGT00390000018085.a.b.b	ENSGT00940000157055 #10	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #25	ENSGT00940000158539 #26	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #28	ENSGT01100000264677	ENSGT00390000016542 #29	ENSGT00940000157233 #30	ENSGT00510000047245.w.a.b	ENSGT00940000154940.fb.b	ENSGT00950000183208.A.c.a #33	ENSGT00390000006631 #34	ENSGT00950000182860.a.b.b #35	ENSGT00390000008033 #37	ENSGT00900000142862
Bos_b	ANCESTRAL SPECIES	3	ENSGT00940000160209.e	ENSGT00390000010523.c.b	ENSGT00390000007818.e.b.b	ENSGT00390000009987	ENSGT00930000150980.a #7	ENSGT00940000155515.a.b.b.l #8	ENSGT00940000157055 #10	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #25	ENSGT00940000158539 #26	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #28	ENSGT01100000264677	ENSGT00390000016542 #29	ENSGT00940000157233 #30	ENSGT00510000047245.w.a.b	ENSGT00940000154940.fb.b	ENSGT00950000183208.A.c.a #33	ENSGT00390000006631 #34	ENSGT00950000182860.a.b.b #35	ENSGT00390000008033 #37	ENSGT00940000154276.jb.a.a.a.a.a.a.b.a.a.b.b
Cow	MODERN SPECIES	11	RPRM (ENSBTAG00000021526)	ENSBTAG00000033143	ARL6IP6 (ENSBTAG00000001435)	ENSBTAG00000047365	PRPF40A (ENSBTAG00000048151) #7	FMNL2 (ENSBTAG00000026851) #8	STAM2 (ENSBTAG00000001887) #10	CACNB4 (ENSBTAG00000002297) #12	ARL5A (ENSBTAG00000002293) #13	NEB (ENSBTAG00000006907) #14	RIF1 (ENSBTAG00000021020) #15	TNFAIP6 (ENSBTAG00000007239) #16	NMI (ENSBTAG00000032369) #17	RBM43 (ENSBTAG00000016217) #18	RND3 (ENSBTAG00000039731) #19	MMADHC (ENSBTAG00000015962) #22	LYPD6 (ENSBTAG00000047426) #23	LYPD6B (ENSBTAG00000019683) #25	KIF5C (ENSBTAG00000018125) #26	EPC2 (ENSBTAG00000018581) #27	MBD5 (ENSBTAG00000019592) #28	PTMA (ENSBTAG00000051947)	ORC4 (ENSBTAG00000015291) #29	ACVR2A (ENSBTAG00000018114) #30	ENSBTAG00000012376	ENSBTAG00000054108	ZEB2 (ENSBTAG00000048810) #33	ZEB2 (ENSBTAG00000012615) #33	GTDC1 (ENSBTAG00000001132) #34	ENSBTAG00000050589 #34	ARHGAP15 (ENSBTAG00000032289) #35
Hybrid Bos Indicus	MODERN SPECIES	11	GALNT13 (ENSBIXG00005019576)	RPRM (ENSBIXG00005019467)	ENSBIXG00005019449	ARL6IP6 (ENSBIXG00005003165)	PRPF40A (ENSBIXG00005005862) #7	FMNL2 (ENSBIXG00005019262) #8	STAM2 (ENSBIXG00005019037) #10	CACNB4 (ENSBIXG00005003080) #12	ARL5A (ENSBIXG00005002986) #13	NEB (ENSBIXG00005018305) #14	RIF1 (ENSBIXG00005018091) #15	TNFAIP6 (ENSBIXG00005017934) #16	NMI (ENSBIXG00005017903) #17	RBM43 (ENSBIXG00005017876) #18	RND3 (ENSBIXG00005017847) #19	MMADHC (ENSBIXG00005017782) #22	LYPD6 (ENSBIXG00005017744) #23	LYPD6B (ENSBIXG00005017688) #25	KIF5C (ENSBIXG00005017619) #26	EPC2 (ENSBIXG00005017562) #27	MBD5 (ENSBIXG00005017469) #28	ENSBIXG00005017400	ENSBIXG00005017396	ENSBIXG00005005733	ORC4 (ENSBIXG00005017338) #29	ACVR2A (ENSBIXG00005002803) #30	ENSBIXG00005017172	ENSBIXG00005002793	ZEB2 (ENSBIXG00005017016) #33	GTDC1 (ENSBIXG00005016592) #34	ARHGAP15 (ENSBIXG00005016328) #35
Bos_a	ANCESTRAL SPECIES	4	ENSGT00390000010523.c.b	ENSGT00390000007818.e.b.b	ENSGT00390000009987	ENSGT00930000150980.a #7	ENSGT00940000155515.a.b.b.l #8	ENSGT00390000018085.a.b.b	ENSGT00940000157055 #10	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #25	ENSGT00940000158539 #26	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #28	ENSGT00390000016542 #29	ENSGT00940000157233 #30	ENSGT00940000154940.fb.b	ENSGT00950000183208.A.c.a #33	ENSGT00390000006631 #34	ENSGT00950000182860.a.b.b #35	ENSGT00390000008033 #37	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00940000153272.a.b.z.a.a.a.b
Domestic yak	MODERN SPECIES	11	PRPF40A (ENSBGRG00000015929) #7	FMNL2 (ENSBGRG00000015350) #8	STAM2 (ENSBGRG00000015223) #10	CACNB4 (ENSBGRG00000008687) #12	ARL5A (ENSBGRG00000008374) #13	ENSBGRG00000008336	NEB (ENSBGRG00000006143) #14	RIF1 (ENSBGRG00000005974) #15	TNFAIP6 (ENSBGRG00000005909) #16	ENSBGRG00000005896	NMI (ENSBGRG00000005853) #17	ENSBGRG00000005845	RBM43 (ENSBGRG00000005796) #18	FAM98B (ENSBGRG00000005761)	RND3 (ENSBGRG00000005710) #19	MMADHC (ENSBGRG00000005641) #22	LYPD6 (ENSBGRG00000005614) #23	LYPD6B (ENSBGRG00000005574) #25	ENSBGRG00000005565	KIF5C (ENSBGRG00000005336) #26	EPC2 (ENSBGRG00000005242) #27	MBD5 (ENSBGRG00000005195) #28	ENSBGRG00000005171	ORC4 (ENSBGRG00000005070) #29	ACVR2A (ENSBGRG00000004989) #30	ENSBGRG00000004949	ZEB2 (ENSBGRG00000004703) #33	GTDC1 (ENSBGRG00000004374) #34	ENSBGRG00000004340	ARHGAP15 (ENSBGRG00000004300) #35	KYNU (ENSBGRG00000004206) #37
Wild yak	MODERN SPECIES	696													ENSBMUG00000003839	RND3 (ENSBMUG00000003872) #19	ENSBMUG00000003887	MMADHC (ENSBMUG00000003907) #22	LYPD6 (ENSBMUG00000003931) #23	LYPD6B (ENSBMUG00000003956) #25	ENSBMUG00000003968	KIF5C (ENSBMUG00000004035) #26	EPC2 (ENSBMUG00000004075) #27	MBD5 (ENSBMUG00000004107) #28
Siberian musk deer	MODERN SPECIES	346	GALNT13 (ENSMMSG00000004530)	RPRM (ENSMMSG00000004641)	ARL6IP6 (ENSMMSG00000004675)	PRPF40A (ENSMMSG00000004797) #7	FMNL2 (ENSMMSG00000005210) #8	STAM2 (ENSMMSG00000005295) #10	CACNB4 (ENSMMSG00000005906) #12	ARL5A (ENSMMSG00000016042) #13	NEB (ENSMMSG00000016236) #14	RIF1 (ENSMMSG00000017985) #15	TNFAIP6 (ENSMMSG00000018393) #16	NMI (ENSMMSG00000018423) #17	RBM43 (ENSMMSG00000018455) #18	ENSMMSG00000018486	RND3 (ENSMMSG00000018506) #19	MMADHC (ENSMMSG00000018547) #22	LYPD6 (ENSMMSG00000018611) #23	LYPD6B (ENSMMSG00000018636) #25	KIF5C (ENSMMSG00000018662) #26	EPC2 (ENSMMSG00000018790) #27	ENSMMSG00000018886	MBD5 (ENSMMSG00000019026) #28	ENSMMSG00000019093	ORC4 (ENSMMSG00000019167) #29	ACVR2A (ENSMMSG00000019227) #30	ENSMMSG00000019266	ENSMMSG00000019276	ENSMMSG00000019314	ZEB2 (ENSMMSG00000019357) #33	ENSMMSG00000019525	GTDC1 (ENSMMSG00000019550) #34
Yarkand deer	MODERN SPECIES	26	ENSCHYG00000022588	ARL6IP6 (ENSCHYG00000022617)	PRPF40A (ENSCHYG00000022725) #7	FMNL2 (ENSCHYG00000023162) #8	ENSCHYG00000023717	STAM2 (ENSCHYG00000023731) #10	CACNB4 (ENSCHYG00000023861) #12	ARL5A (ENSCHYG00000024878) #13	NEB (ENSCHYG00000024952) #14	RIF1 (ENSCHYG00000025435) #15	TNFAIP6 (ENSCHYG00000025495) #16	NMI (ENSCHYG00000025513) #17	RBM43 (ENSCHYG00000025543) #18	ENSCHYG00000025571	RND3 (ENSCHYG00000025578) #19	MMADHC (ENSCHYG00000025604) #22	ENSCHYG00000025627 #23	LYPD6B (ENSCHYG00000025655) #25	KIF5C (ENSCHYG00000008710) #26	EPC2 (ENSCHYG00000008812) #27	MBD5 (ENSCHYG00000009045) #28	ORC4 (ENSCHYG00000009235) #29	ACVR2A (ENSCHYG00000009478) #30	ENSCHYG00000009591 #31	ZEB2 (ENSCHYG00000009791) #33	GTDC1 (ENSCHYG00000010152) #34	ARHGAP15 (ENSCHYG00000010616) #35	KYNU (ENSCHYG00000010703) #37	LRP1B (ENSCHYG00000010870)	ENSCHYG00000011576	NXPH2 (ENSCHYG00000011648)