Euarchontoglires	ANCESTRAL SPECIES	14	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00950000185140	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT01020000230615	ENSGT00950000183208.A.c.a #34	ENSGT00900000143214	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00900000142862	ENSGT00940000157521.b
Primates	ANCESTRAL SPECIES	13	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT01020000230615	ENSGT00950000183208.A.c.a #34	ENSGT00900000143214	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a
Haplorrhini	ANCESTRAL SPECIES	10	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.v #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT01020000230615	ENSGT00950000183208.A.c.a #34	ENSGT00900000143214	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a
Simiiformes	ANCESTRAL SPECIES	15	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.v #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000154530.r.b.b	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT01020000230615	ENSGT00950000183208.A.c.a #34	ENSGT00900000143214	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a
Catarrhini	ANCESTRAL SPECIES	16	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00620000089259	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.v #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00910000147393	ENSGT00530000063686.a.b #18	ENSGT00940000154530.r.b.b	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00910000146654	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT00950000183208.A.c.a.e #34	ENSGT00900000143214	ENSGT00910000147897	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00940000157521.b
Cercopithecidae	ANCESTRAL SPECIES	13	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00620000089259	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.v #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00910000147393	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #19	ENSGT00940000153201.j.k.b ##20	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00910000146654	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT00950000183208.A.c.a.e #34	ENSGT00900000143214	ENSGT00910000147897	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00940000157521.b
Cercopithecinae	ANCESTRAL SPECIES	11	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.v #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00910000147393	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #19	ENSGT00940000153201.j.k.a.a.b.a.b ##20	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00910000146654	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT00950000183208.A.c.a.e #34	ENSGT00900000143214	ENSGT00910000147897	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00940000157521.b
Cercopithecinae_a	ANCESTRAL SPECIES	16	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.v #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00910000147393	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #19	ENSGT00940000153201.j.k.a.a.b.a.b ##20	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00910000146654	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT01020000230615	ENSGT00950000183208.A.c.a.e #34	ENSGT00900000143214	ENSGT00910000147897	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37
Macaca	ANCESTRAL SPECIES	15	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.v #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00910000147393	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #19	ENSGT00940000153201.j.k.a.a.b.a.b ##20	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00390000010822.p	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT01020000230615	ENSGT00950000183208.A.c.a.e #34	ENSGT00900000143214	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00940000157521.b
Macaca_a	ANCESTRAL SPECIES	17	ENSGT01100000263539.b.a.a.a.b.b.a.b.b.a.a.a.a.a.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.v #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00390000010822.p	ENSGT00940000158526 #27	ENSGT00940000167556.b.b.a.b.a.a.a.b.b.b.b.b.a.a.a.a.b.a.a.b.a.a.a #28	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT00390000015224.c.a.a.a.k.e.a #33	ENSGT00950000183208.A.c.a.e #34	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00940000157521.b
Crab-eating macaque	MODERN SPECIES	3	RPRM (ENSMFAG00000023756) #7	ARL6IP6 (ENSMFAG00000046021) #8	PRPF40A (ENSMFAG00000038480) #9	FMNL2 (ENSMFAG00000000995) #10	STAM2 (ENSMFAG00000039480) #11	CACNB4 (ENSMFAG00000044631) #12	ENSMFAG00000056377 #13	NEB (ENSMFAG00000000188) #14	RIF1 (ENSMFAG00000032233) #15	TNFAIP6 (ENSMFAG00000000925) #16	NMI (ENSMFAG00000045501) #17	RBM43 (ENSMFAG00000031648) #18	RND3 (ENSMFAG00000045221) #19	ENSMFAG00000037633 #20	ENSMFAG00000060272 #21	MMADHC (ENSMFAG00000001801) #22	LYPD6 (ENSMFAG00000002977) #23	LYPD6B (ENSMFAG00000046204) #24	KIF5C (ENSMFAG00000038774) #25	ENSMFAG00000052887 #26	EPC2 (ENSMFAG00000002751) #27	ENSMFAG00000058250 #28	MBD5 (ENSMFAG00000035493) #29	ORC4 (ENSMFAG00000031595) #30	ACVR2A (ENSMFAG00000003464) #31	ENSMFAG00000019961 #32	ENSMFAG00000052786 #33	ZEB2 (ENSMFAG00000030381) #34	GTDC1 (ENSMFAG00000032520) #35	ARHGAP15 (ENSMFAG00000016740) #36	KYNU (ENSMFAG00000041160) #37
Rhesus	MODERN SPECIES	3	ENSMMUG00000056430	ARL6IP6 (ENSMMUG00000062827) #8	PRPF40A (ENSMMUG00000010812) #9	FMNL2 (ENSMMUG00000031452) #10	STAM2 (ENSMMUG00000010527) #11	CACNB4 (ENSMMUG00000010526) #12	ARL5A (ENSMMUG00000010521) #13	RIF1 (ENSMMUG00000008611) #15	TNFAIP6 (ENSMMUG00000010927) #16	NMI (ENSMMUG00000017781) #17	RBM43 (ENSMMUG00000044949) #18	RND3 (ENSMMUG00000016040) #19	ENSMMUG00000056410	ENSMMUG00000058846	ENSMMUG00000051118	MMADHC (ENSMMUG00000005633) #22	LYPD6 (ENSMMUG00000038492) #23	ENSMMUG00000056996	LYPD6B (ENSMMUG00000009475) #24	KIF5C (ENSMMUG00000009268) #25	ENSMMUG00000031468	EPC2 (ENSMMUG00000023176) #27	ENSMMUG00000054591 #28	ENSMMUG00000049941	MBD5 (ENSMMUG00000014921) #29	ORC4 (ENSMMUG00000000043) #30	ACVR2A (ENSMMUG00000000042) #31	ENSMMUG00000006925 #32	ENSMMUG00000055627 #33	ENSMMUG00000052142	ENSMMUG00000065347
Pig-tailed macaque	DUPLICATION
Pig-tailed macaque	MODERN SPECIES	193	ARL6IP6 (ENSMNEG00000041131) #8	PRPF40A (ENSMNEG00000042025) #9	FMNL2 (ENSMNEG00000042052) #10	ENSMNEG00000031306	STAM2 (ENSMNEG00000026377) #11	CACNB4 (ENSMNEG00000032652) #12	ARL5A (ENSMNEG00000035230) #13	NEB (ENSMNEG00000037586) #14	RIF1 (ENSMNEG00000031616) #15	TNFAIP6 (ENSMNEG00000005810) #16	NMI (ENSMNEG00000036210) #17	ENSMNEG00000043989	RBM43 (ENSMNEG00000030900) #18	RND3 (ENSMNEG00000034976) #19	ENSMNEG00000033300 ##20	MMADHC (ENSMNEG00000036865) #22	LYPD6 (ENSMNEG00000014126) #23	LYPD6B (ENSMNEG00000036224) #24	KIF5C (ENSMNEG00000022981) #25	EPC2 (ENSMNEG00000039186) #27	MBD5 (ENSMNEG00000029374) #29	ORC4 (ENSMNEG00000031287) #30	ACVR2A (ENSMNEG00000043553) #31	ENSMNEG00000036514	ENSMNEG00000033956	ENSMNEG00000007339 #33
Pig-tailed macaque	MODERN SPECIES	485	PRR5L (ENSMNEG00000043138)	COMMD9 (ENSMNEG00000030213)	LDLRAD3 (ENSMNEG00000037863)	ENSMNEG00000045218	TRIM44 (ENSMNEG00000039165)	FJX1 (ENSMNEG00000021210)	PAMR1 (ENSMNEG00000038968)	SLC1A2 (ENSMNEG00000033227)	ENSMNEG00000027059	CD44 (ENSMNEG00000024975)	PDHX (ENSMNEG00000041540)	APIP (ENSMNEG00000037577)	EHF (ENSMNEG00000035998)	ELF5 (ENSMNEG00000036605)	CAT (ENSMNEG00000043629)	ENSMNEG00000043168 #22	ABTB2 (ENSMNEG00000011772)	NAT10 (ENSMNEG00000041284)	CAPRIN1 (ENSMNEG00000030485)	LMO2 (ENSMNEG00000031732)	FBXO3 (ENSMNEG00000045464)	C11orf91 (ENSMNEG00000033587)	KIAA1549L (ENSMNEG00000040724)	HIPK3 (ENSMNEG00000030400)	CSTF3 (ENSMNEG00000021807)	TCP11L1 (ENSMNEG00000034850)	DEPDC7 (ENSMNEG00000010538)	QSER1 (ENSMNEG00000038918)	PRRG4 (ENSMNEG00000035106)	CCDC73 (ENSMNEG00000037225)	EIF3M (ENSMNEG00000002856)
Cercopithecinae_b	ANCESTRAL SPECIES	10	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.v #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00910000147393	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #19	ENSGT00940000153201.j.k.a.a.b.a.b ##20	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00910000146654	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT01040000240515.h	ENSGT01020000230615	ENSGT00950000183208.A.c.a.e #34	ENSGT00900000143214	ENSGT00910000147897	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36
Olive baboon	MODERN SPECIES	1	RPRM (ENSPANG00000016888) #7	ARL6IP6 (ENSPANG00000018067) #8	PRPF40A (ENSPANG00000022095) #9	FMNL2 (ENSPANG00000008524) #10	STAM2 (ENSPANG00000025044) #11	CACNB4 (ENSPANG00000008398) #12	ENSPANG00000009772 #13	NEB (ENSPANG00000005536) #14	RIF1 (ENSPANG00000008525) #15	TNFAIP6 (ENSPANG00000021874) #16	NMI (ENSPANG00000006057) #17	RBM43 (ENSPANG00000009533) #18	ENSPANG00000047432	RND3 (ENSPANG00000015939) #19	ENSPANG00000009096 ##20	MMADHC (ENSPANG00000019761) #22	ENSPANG00000038761	ENSPANG00000048846	LYPD6 (ENSPANG00000019895) #23	LYPD6B (ENSPANG00000022096) #24	KIF5C (ENSPANG00000018689) #25	ENSPANG00000042526	EPC2 (ENSPANG00000009534) #27	MBD5 (ENSPANG00000015848) #29	ORC4 (ENSPANG00000009846) #30	ACVR2A (ENSPANG00000012445) #31	ENSPANG00000035057	CLIC1 (ENSPANG00000019928)	ENSPANG00000015679 #33	ENSPANG00000003757	ENSPANG00000043648
Cercopithecinae_d	ANCESTRAL SPECIES		ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.v #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00910000147393	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #19	ENSGT00940000153201.j.k.a.a.b.a.b ##20	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT01040000240515.h	ENSGT01020000230615	ENSGT00950000183208.A.c.a.e #34	ENSGT00900000143214	ENSGT00910000147897	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37
Sooty mangabey	MODERN SPECIES	480	ARL6IP6 (ENSCATG00000037038) #8	PRPF40A (ENSCATG00000043798) #9	ENSCATG00000039643	FMNL2 (ENSCATG00000030795) #10	STAM2 (ENSCATG00000045298) #11	CACNB4 (ENSCATG00000035449) #12	ARL5A (ENSCATG00000029667) #13	NEB (ENSCATG00000031600) #14	RIF1 (ENSCATG00000033353) #15	TNFAIP6 (ENSCATG00000043098) #16	NMI (ENSCATG00000045259) #17	ENSCATG00000038471	RBM43 (ENSCATG00000029617) #18	RND3 (ENSCATG00000042453) #19	ENSCATG00000036472 ##20	MMADHC (ENSCATG00000043511) #22	LYPD6 (ENSCATG00000030657) #23	LYPD6B (ENSCATG00000033638) #24	KIF5C (ENSCATG00000045100) #25	EPC2 (ENSCATG00000045291) #27	MBD5 (ENSCATG00000040834) #29	ORC4 (ENSCATG00000045066) #30	ACVR2A (ENSCATG00000033685) #31	ENSCATG00000039190	ENSCATG00000012613	ENSCATG00000012956	ZEB2 (ENSCATG00000038567) #34	ENSCATG00000017157	GTDC1 (ENSCATG00000040626) #35	ENSCATG00000042700	ARHGAP15 (ENSCATG00000036437) #36
Drill	MODERN SPECIES	965			ARL6IP6 (ENSMLEG00000019180) #8	PRPF40A (ENSMLEG00000012078) #9	FMNL2 (ENSMLEG00000039912) #10	STAM2 (ENSMLEG00000038778) #11	CACNB4 (ENSMLEG00000032404) #12	ENSMLEG00000039596 #13	NEB (ENSMLEG00000025619) #14	RIF1 (ENSMLEG00000042945) #15	TNFAIP6 (ENSMLEG00000039791) #16	NMI (ENSMLEG00000033257) #17	ENSMLEG00000033169	RBM43 (ENSMLEG00000032155) #18	RND3 (ENSMLEG00000035844) #19	MMADHC (ENSMLEG00000033230) #22
Vervet Monkey	MODERN SPECIES	1	GALNT13 (ENSCSAG00000015977)	RPRM (ENSCSAG00000018646) #7	ENSCSAG00000015984	ARL6IP6 (ENSCSAG00000015990) #8	PRPF40A (ENSCSAG00000016002) #9	ENSCSAG00000016011 #10	STAM2 (ENSCSAG00000016021) #11	CACNB4 (ENSCSAG00000016028) #12	NEB (ENSCSAG00000016065) #14	RIF1 (ENSCSAG00000016089) #15	TNFAIP6 (ENSCSAG00000016095) #16	NMI (ENSCSAG00000016102) #17	RBM43 (ENSCSAG00000016105) #18	RND3 (ENSCSAG00000016117) #19	ENSCSAG00000016123 ##20	MMADHC (ENSCSAG00000016144) #22	LYPD6 (ENSCSAG00000016149) #23	LYPD6B (ENSCSAG00000016151) #24	KIF5C (ENSCSAG00000016159) #25	ENSCSAG00000018645	EPC2 (ENSCSAG00000016167) #27	MBD5 (ENSCSAG00000016175) #29	ORC4 (ENSCSAG00000016183) #30	ACVR2A (ENSCSAG00000016192) #31	ZEB2 (ENSCSAG00000016197) #34	GTDC1 (ENSCSAG00000016202) #35	ARHGAP15 (ENSCSAG00000016210) #36	KYNU (ENSCSAG00000016218) #37	LRP1B (ENSCSAG00000016246)	NXPH2 (ENSCSAG00000016269)	SPOPL (ENSCSAG00000016280)
Rhinopithecus	DUPLICATION
Rhinopithecus	DUPLICATION
Rhinopithecus	ANCESTRAL SPECIES																	ENSGT00390000015050.o.a #22
Golden snub-nosed monkey	MODERN SPECIES	3091																ENSRROG00000039512 #22	ENSRROG00000042793	PPM1B (ENSRROG00000045182)	SLC3A1 (ENSRROG00000028579)	PREPL (ENSRROG00000041940)	CAMKMT (ENSRROG00000030830)	SIX3 (ENSRROG00000042657)	SIX2 (ENSRROG00000043241)
Black snub-nosed monkey	MODERN SPECIES	2342						ZFP36L2 (ENSRBIG00000026428)	ENSRBIG00000035265	THADA (ENSRBIG00000028134)	PLEKHH2 (ENSRBIG00000035745)	C1GALT1C1L (ENSRBIG00000006561)	ENSRBIG00000041164	DYNC2LI1 (ENSRBIG00000031972)	ABCG5 (ENSRBIG00000039579)	ABCG8 (ENSRBIG00000024223)	LRPPRC (ENSRBIG00000031552)	ENSRBIG00000036556 #22	PPM1B (ENSRBIG00000037090)	SLC3A1 (ENSRBIG00000032035)	PREPL (ENSRBIG00000030291)	CAMKMT (ENSRBIG00000031044)	SIX3 (ENSRBIG00000031093)	SIX2 (ENSRBIG00000041429)	SRBD1 (ENSRBIG00000033486)	PRKCE (ENSRBIG00000043807)	EPAS1 (ENSRBIG00000032880)	TMEM247 (ENSRBIG00000044940)	ATP6V1E2 (ENSRBIG00000004827)	RHOQ (ENSRBIG00000026914)	PIGF (ENSRBIG00000037873)	ENSRBIG00000012594	ENSRBIG00000032105
Rhinopithecus	ANCESTRAL SPECIES																	ENSGT00390000015050.o.b #22
Golden snub-nosed monkey	MODERN SPECIES	3307																ENSRROG00000024842 #22	LYPD6 (ENSRROG00000032608) #23
Rhinopithecus	ANCESTRAL SPECIES	577														ENSGT00940000157541 #19	ENSGT00940000153201.j.k.b ##20	ENSGT00390000015050.p #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29
Black snub-nosed monkey	MODERN SPECIES	619														RND3 (ENSRBIG00000029144) #19	ENSRBIG00000034465 ##20	ENSRBIG00000014354 #22	LYPD6 (ENSRBIG00000034039) #23	LYPD6B (ENSRBIG00000039136) #24	KIF5C (ENSRBIG00000037636) #25	EPC2 (ENSRBIG00000030738) #27
Hominoidea	ANCESTRAL SPECIES	15	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00620000089259	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.v #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00910000147393	ENSGT00530000063686.a.b #18	ENSGT00940000154530.r.b.b	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00910000146654	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT00950000183208.A.c.a.e #34	ENSGT00900000143214	ENSGT00910000147897	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00940000157521.b
Hominidae	ANCESTRAL SPECIES	17	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00620000089259	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.v #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00910000147393	ENSGT00530000063686.a.b #18	ENSGT00940000154530.r.b.b	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00910000146654	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT00950000183208.A.c.a.e #34	ENSGT00910000147897	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	14	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00620000089259	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.v.f #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00910000147393	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT00950000183208.A.c.a.e #34	ENSGT00910000147897	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953
Gorilla	MODERN SPECIES	15	GALNT13 (ENSGGOG00000034959)	RPRM (ENSGGOG00000002162) #7	ARL6IP6 (ENSGGOG00000015604) #8	PRPF40A (ENSGGOG00000015592) #9	ENSGGOG00000028462	FMNL2 (ENSGGOG00000008600) #10	STAM2 (ENSGGOG00000011441) #11	CACNB4 (ENSGGOG00000038672) #12	ENSGGOG00000002066 #13	NEB (ENSGGOG00000016489) #14	RIF1 (ENSGGOG00000040178) #15	TNFAIP6 (ENSGGOG00000022498) #16	NMI (ENSGGOG00000013518) #17	RBM43 (ENSGGOG00000041294) #18	RND3 (ENSGGOG00000036127) #19	MMADHC (ENSGGOG00000027348) #22	LYPD6 (ENSGGOG00000007400) #23	LYPD6B (ENSGGOG00000000801) #24	KIF5C (ENSGGOG00000016596) #25	EPC2 (ENSGGOG00000011299) #27	MBD5 (ENSGGOG00000003833) #29	ORC4 (ENSGGOG00000022258) #30	ACVR2A (ENSGGOG00000015713) #31	ZEB2 (ENSGGOG00000003186) #34	ENSGGOG00000039783	GTDC1 (ENSGGOG00000015776) #35	ARHGAP15 (ENSGGOG00000034982) #36	KYNU (ENSGGOG00000007406) #37	LRP1B (ENSGGOG00000040868)	ENSGGOG00000026916	NXPH2 (ENSGGOG00000008363)
Homo/Pan group	ANCESTRAL SPECIES	13	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00620000089259	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.v.f #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00910000147393	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT00950000183208.A.c.a.e #34	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862
Pan	ANCESTRAL SPECIES	12	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00620000089259	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.v.f #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00910000147393	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00960000190927	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT00950000183208.A.c.a.e #34	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00390000007384.c.b	ENSGT00940000157521.b	ENSGT00910000147617
Chimpanzee	MODERN SPECIES	15	RPRM (ENSPTRG00000012545) #7	ARL6IP6 (ENSPTRG00000012544) #8	PRPF40A (ENSPTRG00000012543) #9	ENSPTRG00000048776	FMNL2 (ENSPTRG00000012541) #10	STAM2 (ENSPTRG00000012540) #11	CACNB4 (ENSPTRG00000047916) #12	ARL5A (ENSPTRG00000012538) #13	ENSPTRG00000039444	NEB (ENSPTRG00000012536) #14	RIF1 (ENSPTRG00000012534) #15	TNFAIP6 (ENSPTRG00000012533) #16	NMI (ENSPTRG00000012531) #17	RBM43 (ENSPTRG00000046668) #18	RND3 (ENSPTRG00000012527) #19	MMADHC (ENSPTRG00000012525) #22	LYPD6 (ENSPTRG00000012524) #23	LYPD6B (ENSPTRG00000012523) #24	KIF5C (ENSPTRG00000012521) #25	ENSPTRG00000051205	EPC2 (ENSPTRG00000012518) #27	MBD5 (ENSPTRG00000029184) #29	ORC4 (ENSPTRG00000012515) #30	ACVR2A (ENSPTRG00000012514) #31	ZEB2 (ENSPTRG00000012513) #34	GTDC1 (ENSPTRG00000012511) #35	ARHGAP15 (ENSPTRG00000012510) #36	KYNU (ENSPTRG00000012509) #37	ENSPTRG00000048004	LRP1B (ENSPTRG00000012508)	ENSPTRG00000042896
Bonobo	MODERN SPECIES	15	RPRM (ENSPPAG00000002667) #7	ARL6IP6 (ENSPPAG00000026309) #8	PRPF40A (ENSPPAG00000040033) #9	ENSPPAG00000009946	FMNL2 (ENSPPAG00000038903) #10	STAM2 (ENSPPAG00000037568) #11	CACNB4 (ENSPPAG00000028311) #12	ARL5A (ENSPPAG00000033494) #13	ENSPPAG00000043206 #14	RIF1 (ENSPPAG00000023754) #15	TNFAIP6 (ENSPPAG00000029874) #16	NMI (ENSPPAG00000034174) #17	ENSPPAG00000028605	RBM43 (ENSPPAG00000035042) #18	RND3 (ENSPPAG00000042575) #19	MMADHC (ENSPPAG00000029746) #22	LYPD6 (ENSPPAG00000043249) #23	LYPD6B (ENSPPAG00000039900) #24	KIF5C (ENSPPAG00000031052) #25	ENSPPAG00000001157	EPC2 (ENSPPAG00000040114) #27	MBD5 (ENSPPAG00000037170) #29	ORC4 (ENSPPAG00000043794) #30	ACVR2A (ENSPPAG00000043981) #31	ZEB2 (ENSPPAG00000025839) #34	GTDC1 (ENSPPAG00000033824) #35	ARHGAP15 (ENSPPAG00000031056) #36	KYNU (ENSPPAG00000008434) #37	ENSPPAG00000039032	LRP1B (ENSPPAG00000003706)	ENSPPAG00000041987
Human	MODERN SPECIES	11	KCNJ3 (ENSG00000162989)	GALNT13 (ENSG00000144278)	RPRM (ENSG00000177519) #7	ARL6IP6 (ENSG00000177917) #8	PRPF40A (ENSG00000196504) #9	FMNL2 (ENSG00000157827) #10	STAM2 (ENSG00000115145) #11	CACNB4 (ENSG00000182389) #12	ARL5A (ENSG00000162980) #13	NEB (ENSG00000183091) #14	RIF1 (ENSG00000080345) #15	TNFAIP6 (ENSG00000123610) #16	NMI (ENSG00000123609) #17	RBM43 (ENSG00000184898) #18	RND3 (ENSG00000115963) #19	MMADHC (ENSG00000168288) #22	LYPD6 (ENSG00000187123) #23	LYPD6B (ENSG00000150556) #24	KIF5C (ENSG00000168280) #25	EPC2 (ENSG00000135999) #27	MBD5 (ENSG00000204406) #29	ORC4 (ENSG00000115947) #30	ACVR2A (ENSG00000121989) #31	ZEB2 (ENSG00000169554) #34	GTDC1 (ENSG00000121964) #35	ARHGAP15 (ENSG00000075884) #36	KYNU (ENSG00000115919) #37	LRP1B (ENSG00000168702)	NXPH2 (ENSG00000144227)	SPOPL (ENSG00000144228)	HNMT (ENSG00000150540)
Orangutan	MODERN SPECIES	15	ARL6IP6 (ENSPPYG00000012855) #8	PRPF40A (ENSPPYG00000012854) #9	ENSPPYG00000012852	FMNL2 (ENSPPYG00000012851) #10	STAM2 (ENSPPYG00000012850) #11	CACNB4 (ENSPPYG00000012849) #12	ARL5A (ENSPPYG00000012848) #13	ENSPPYG00000032033	NEB (ENSPPYG00000012847) #14	RIF1 (ENSPPYG00000012846) #15	TNFAIP6 (ENSPPYG00000012845) #16	ENSPPYG00000012844 #17	RBM43 (ENSPPYG00000037248) #18	ENSPPYG00000036365	RND3 (ENSPPYG00000012842) #19	MMADHC (ENSPPYG00000012840) #22	LYPD6 (ENSPPYG00000012839) #23	ENSPPYG00000029593 #24	KIF5C (ENSPPYG00000012838) #25	ENSPPYG00000032644	EPC2 (ENSPPYG00000012837) #27	ENSPPYG00000036116	MBD5 (ENSPPYG00000012836) #29	ORC4 (ENSPPYG00000012835) #30	ACVR2A (ENSPPYG00000012834) #31	ZEB2 (ENSPPYG00000012831) #34	ENSPPYG00000031095 #35	GTDC1 (ENSPPYG00000034543) #35	ARHGAP15 (ENSPPYG00000012828) #36	KYNU (ENSPPYG00000012827) #37	LRP1B (ENSPPYG00000012826)
Gibbon	DUPLICATION
Gibbon	MODERN SPECIES	7	PRPF40A (ENSNLEG00000011324) #9	FMNL2 (ENSNLEG00000026694) #10	ENSNLEG00000019196	ENSNLEG00000029701	STAM2 (ENSNLEG00000011293) #11	CACNB4 (ENSNLEG00000029444) #12	ENSNLEG00000030371	ARL5A (ENSNLEG00000011191) #13	NEB (ENSNLEG00000011170) #14	RIF1 (ENSNLEG00000010955) #15	TNFAIP6 (ENSNLEG00000010934) #16	NMI (ENSNLEG00000010893) #17	RBM43 (ENSNLEG00000010889) #18	RND3 (ENSNLEG00000010846) #19	ENSNLEG00000035632	MMADHC (ENSNLEG00000010795) #22	IQCE (ENSNLEG00000010709)	BRAT1 (ENSNLEG00000010655)	AMZ1 (ENSNLEG00000010620)	GNA12 (ENSNLEG00000033618)	CARD11 (ENSNLEG00000010543)	ENSNLEG00000015435	ENSNLEG00000015459	AP5Z1 (ENSNLEG00000015462)	RADIL (ENSNLEG00000015475)	MMD2 (ENSNLEG00000015480)	ENSNLEG00000036049	RBAK (ENSNLEG00000030817)	WIPI2 (ENSNLEG00000015492)	ENSNLEG00000027537	ENSNLEG00000031210
Gibbon	MODERN SPECIES	5	COMMD9 (ENSNLEG00000017943)	LDLRAD3 (ENSNLEG00000017940)	ENSNLEG00000033071	ENSNLEG00000034033	TRIM44 (ENSNLEG00000017939)	FJX1 (ENSNLEG00000018184)	PAMR1 (ENSNLEG00000017937)	SLC1A2 (ENSNLEG00000032279)	ENSNLEG00000031295	CD44 (ENSNLEG00000017932)	PDHX (ENSNLEG00000017930)	APIP (ENSNLEG00000028265)	EHF (ENSNLEG00000017927)	ELF5 (ENSNLEG00000017925)	CAT (ENSNLEG00000017922)	ENSNLEG00000027640 #22	ENSNLEG00000017921	NAT10 (ENSNLEG00000017916)	CAPRIN1 (ENSNLEG00000017913)	LMO2 (ENSNLEG00000028429)	ENSNLEG00000018183	FBXO3 (ENSNLEG00000017908)	ENSNLEG00000027673	KIAA1549L (ENSNLEG00000026545)	HIPK3 (ENSNLEG00000017906)	CSTF3 (ENSNLEG00000017901)	ENSNLEG00000030363	TCP11L1 (ENSNLEG00000017899)	ENSNLEG00000017897	QSER1 (ENSNLEG00000017896)	PRRG4 (ENSNLEG00000028029)
Platyrrhini	ANCESTRAL SPECIES	9	ENSGT00950000183077.a.a.a.a.b	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00620000089259	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.v #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000154530.r.b.b	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT01020000230615	ENSGT00950000183208.A.c.a #34	ENSGT00900000143214	ENSGT00390000006631 #35	ENSGT00390000002748.j	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00940000157521.b
Mas night monkey	MODERN SPECIES	1325	ARL6IP6 (ENSANAG00000034126) #8	PRPF40A (ENSANAG00000023828) #9	FMNL2 (ENSANAG00000029876) #10	ENSANAG00000024796	ENSANAG00000026006	STAM2 (ENSANAG00000000022) #11	CACNB4 (ENSANAG00000035973) #12	ARL5A (ENSANAG00000027698) #13	NEB (ENSANAG00000025115) #14	RIF1 (ENSANAG00000024840) #15	TNFAIP6 (ENSANAG00000024087) #16	NMI (ENSANAG00000034417) #17	RBM43 (ENSANAG00000032206) #18	ENSANAG00000022645	RND3 (ENSANAG00000033420) #19	MMADHC (ENSANAG00000038372) #22	LYPD6 (ENSANAG00000032366) #23	LYPD6B (ENSANAG00000034708) #24	KIF5C (ENSANAG00000034068) #25	ENSANAG00000027793	EPC2 (ENSANAG00000037383) #27	MBD5 (ENSANAG00000033779) #29	ORC4 (ENSANAG00000023030) #30	ACVR2A (ENSANAG00000030181) #31
Cebidae	ANCESTRAL SPECIES	11	ENSGT00390000010523.c.b #7	ENSGT00950000183077.a.a.a.a.b	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00620000089259	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.v #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT01020000230615	ENSGT00950000183208.A.c.a #34	ENSGT00900000143214	ENSGT00390000006631 #35	ENSGT00390000002748.j	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00940000157521.b
Marmoset	DUPLICATION
Marmoset	MODERN SPECIES	78	ENSCJAG00000048365	RAB40AL (ENSCJAG00000059712)	NXF3 (ENSCJAG00000003435)	ENSCJAG00000039760	ENSCJAG00000062271	TCEAL8 (ENSCJAG00000036572)	TCEAL5 (ENSCJAG00000046955)	ENSCJAG00000003425	RAB40A (ENSCJAG00000057721)	TCEAL4 (ENSCJAG00000075471)	ENSCJAG00000003405	ENSCJAG00000003374	TMEM31 (ENSCJAG00000003393)	PLP1 (ENSCJAG00000003349)	RAB9B (ENSCJAG00000003347)	ENSCJAG00000038643 #22	ENSCJAG00000042281	ENSCJAG00000082114	ENSCJAG00000070962	ENSCJAG00000085484	H2BW1 (ENSCJAG00000033818)	ENSCJAG00000071684	SLC25A53 (ENSCJAG00000085438)	ZCCHC18 (ENSCJAG00000008252)	FAM199X (ENSCJAG00000008241)	ENSCJAG00000008237	IL1RAPL2 (ENSCJAG00000008213)	TEX13A (ENSCJAG00000081533)	NRK (ENSCJAG00000008160)	RADX (ENSCJAG00000008118)	RNF128 (ENSCJAG00000008099)
Marmoset	MODERN SPECIES	18	STAM2 (ENSCJAG00000044417) #11	CACNB4 (ENSCJAG00000003326) #12	ENSCJAG00000040846 #13	ENSCJAG00000086283	ENSCJAG00000075900	NEB (ENSCJAG00000003175) #14	RIF1 (ENSCJAG00000003138) #15	TNFAIP6 (ENSCJAG00000003134) #16	NMI (ENSCJAG00000003127) #17	RBM43 (ENSCJAG00000003125) #18	ENSCJAG00000083510	RND3 (ENSCJAG00000045984) #19	ENSCJAG00000071388	ENSCJAG00000075779	ENSCJAG00000070079	ENSCJAG00000003086 #22	LYPD6 (ENSCJAG00000055489) #23	LYPD6B (ENSCJAG00000003077) #24	KIF5C (ENSCJAG00000003053) #25	ENSCJAG00000076357	EPC2 (ENSCJAG00000012637) #27	MBD5 (ENSCJAG00000012594) #29	ORC4 (ENSCJAG00000012561) #30	ACVR2A (ENSCJAG00000012496) #31	ENSCJAG00000065177	ZEB2 (ENSCJAG00000012457) #34	ENSCJAG00000070871	GTDC1 (ENSCJAG00000012421) #35	ENSCJAG00000079909	ARHGAP15 (ENSCJAG00000012381) #36	KYNU (ENSCJAG00000012322) #37
Cebidae_a	ANCESTRAL SPECIES	27	ENSGT00390000010523.c.b #7	ENSGT00950000183077.a.a.a.a.b	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00620000089259	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.v #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT01020000230615	ENSGT00950000183208.A.c.a #34	ENSGT00900000143214	ENSGT00390000006631 #35	ENSGT00390000002748.j	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00940000157521.b
Capuchin	DUPLICATION
Capuchin	MODERN SPECIES	27	ENSCCAG00000019893	ARL6IP6 (ENSCCAG00000024457) #8	PRPF40A (ENSCCAG00000034856) #9	FMNL2 (ENSCCAG00000028051) #10	ENSCCAG00000020790	ENSCCAG00000007786	STAM2 (ENSCCAG00000030900) #11	CACNB4 (ENSCCAG00000036673) #12	ARL5A (ENSCCAG00000023321) #13	NEB (ENSCCAG00000026566) #14	RIF1 (ENSCCAG00000024760) #15	TNFAIP6 (ENSCCAG00000022288) #16	NMI (ENSCCAG00000022500) #17	RBM43 (ENSCCAG00000020911) #18	RND3 (ENSCCAG00000030386) #19	MMADHC (ENSCCAG00000036477) #22	LYPD6 (ENSCCAG00000028399) #23	LYPD6B (ENSCCAG00000030062) #24	KIF5C (ENSCCAG00000031241) #25	EPC2 (ENSCCAG00000037425) #27	MBD5 (ENSCCAG00000030324) #29	ORC4 (ENSCCAG00000008932) #30	ACVR2A (ENSCCAG00000034862) #31	ENSCCAG00000019840	ZEB2 (ENSCCAG00000036823) #34	GTDC1 (ENSCCAG00000001331) #35	ARHGAP15 (ENSCCAG00000034364) #36	KYNU (ENSCCAG00000028624) #37	LRP1B (ENSCCAG00000026411)	ENSCCAG00000028899	ENSCCAG00000030027
Capuchin	MODERN SPECIES	324				SALL3 (ENSCCAG00000034863)	ATP9B (ENSCCAG00000019163)	NFATC1 (ENSCCAG00000027097)	CTDP1 (ENSCCAG00000022629)	ENSCCAG00000018820	KCNG2 (ENSCCAG00000023074)	SLC66A2 (ENSCCAG00000034335)	HSBP1L1 (ENSCCAG00000023553)	ENSCCAG00000021200	RBFA (ENSCCAG00000025293)	ADNP2 (ENSCCAG00000037993)	PARD6G (ENSCCAG00000028220)	ENSCCAG00000030742 #22
Bolivian squirrel monkey	DUPLICATION
Bolivian squirrel monkey	MODERN SPECIES	44	PHF14 (ENSSBOG00000033689)	ENSSBOG00000027959	THSD7A (ENSSBOG00000022829)	ARID1A (ENSSBOG00000021791)	PIGV (ENSSBOG00000031404)	ZDHHC18 (ENSSBOG00000027289)	SFN (ENSSBOG00000010021)	ENSSBOG00000021731	GPN2 (ENSSBOG00000031587)	GPATCH3 (ENSSBOG00000019680)	NR0B2 (ENSSBOG00000026068)	NUDC (ENSSBOG00000035376)	KDF1 (ENSSBOG00000022048)	TENT5B (ENSSBOG00000023376)	SLC9A1 (ENSSBOG00000034296)	ENSSBOG00000026222 #22	WDTC1 (ENSSBOG00000024363)	TMEM222 (ENSSBOG00000031879)	SYTL1 (ENSSBOG00000022361)	MAP3K6 (ENSSBOG00000022232)	FCN3 (ENSSBOG00000035705)	CD164L2 (ENSSBOG00000016074)	GPR3 (ENSSBOG00000015463)	WASF2 (ENSSBOG00000022556)	ENSSBOG00000002550	AHDC1 (ENSSBOG00000026685)	FGR (ENSSBOG00000033596)	IFI6 (ENSSBOG00000034960)	FAM76A (ENSSBOG00000026158)	STX12 (ENSSBOG00000014436)	PPP1R8 (ENSSBOG00000032910)
Bolivian squirrel monkey	MODERN SPECIES	46	RPRM (ENSSBOG00000009917) #7	ARL6IP6 (ENSSBOG00000029584) #8	PRPF40A (ENSSBOG00000015435) #9	FMNL2 (ENSSBOG00000027176) #10	ENSSBOG00000023807	ENSSBOG00000027242 #11	ENSSBOG00000023639	CACNB4 (ENSSBOG00000025206) #12	ARL5A (ENSSBOG00000034323) #13	NEB (ENSSBOG00000031622) #14	RIF1 (ENSSBOG00000029530) #15	TNFAIP6 (ENSSBOG00000034644) #16	NMI (ENSSBOG00000035067) #17	RBM43 (ENSSBOG00000022371) #18	RND3 (ENSSBOG00000025108) #19	ENSSBOG00000035889 #22	LYPD6 (ENSSBOG00000019011) #23	LYPD6B (ENSSBOG00000017701) #24	KIF5C (ENSSBOG00000013675) #25	EPC2 (ENSSBOG00000035940) #27	MBD5 (ENSSBOG00000024663) #29	ORC4 (ENSSBOG00000028104) #30	ACVR2A (ENSSBOG00000025103) #31	ENSSBOG00000018747	ZEB2 (ENSSBOG00000026124) #34	ENSSBOG00000025406	GTDC1 (ENSSBOG00000030737) #35	ENSSBOG00000023369	ARHGAP15 (ENSSBOG00000027845) #36	KYNU (ENSSBOG00000029002) #37	ENSSBOG00000021516
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	5244																MMADHC (ENSTSYG00000009075) #22	LYPD6 (ENSTSYG00000033724) #23
Tarsier	MODERN SPECIES	6574		MMGT1 (ENSTSYG00000000021)	SLC9A6 (ENSTSYG00000010724)	ENSTSYG00000030938	FHL1 (ENSTSYG00000000860)	MAP7D3 (ENSTSYG00000011953)	ADGRG4 (ENSTSYG00000036196)	ENSTSYG00000033716	BRS3 (ENSTSYG00000003032)	HTATSF1 (ENSTSYG00000028876)	VGLL1 (ENSTSYG00000005070)	TNLG8B (ENSTSYG00000010623)	ARHGEF6 (ENSTSYG00000013105)	RBMX (ENSTSYG00000009555)	ENSTSYG00000034869	ENSTSYG00000026206 #22
Strepsirrhini	ANCESTRAL SPECIES	10	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT00950000183208.A.c.a #34	ENSGT00900000143214	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953
Lemuriformes	ANCESTRAL SPECIES	5	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT00950000183208.A.c.a #34	ENSGT00900000143214	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953
Mouse lemur	MODERN SPECIES	30	GALNT13 (ENSMICG00000013917)	RPRM (ENSMICG00000038767) #7	ARL6IP6 (ENSMICG00000042407) #8	PRPF40A (ENSMICG00000017146) #9	FMNL2 (ENSMICG00000017132) #10	STAM2 (ENSMICG00000009382) #11	CACNB4 (ENSMICG00000005867) #12	ENSMICG00000015788 #13	NEB (ENSMICG00000007063) #14	RIF1 (ENSMICG00000046127) #15	TNFAIP6 (ENSMICG00000045439) #16	NMI (ENSMICG00000046560) #17	RBM43 (ENSMICG00000002078) #18	ENSMICG00000033304	RND3 (ENSMICG00000035694) #19	MMADHC (ENSMICG00000005952) #22	LYPD6 (ENSMICG00000041550) #23	LYPD6B (ENSMICG00000016688) #24	KIF5C (ENSMICG00000016670) #25	EPC2 (ENSMICG00000016659) #27	MBD5 (ENSMICG00000017046) #29	ORC4 (ENSMICG00000004578) #30	ACVR2A (ENSMICG00000004565) #31	ZEB2 (ENSMICG00000017462) #34	GTDC1 (ENSMICG00000007473) #35	ARHGAP15 (ENSMICG00000043939) #36	SCN3A (ENSMICG00000001132)	ENSMICG00000002843	CSRNP3 (ENSMICG00000015267)	GALNT3 (ENSMICG00000015295)	TTC21B (ENSMICG00000015487)
Lemuriformes_a	ANCESTRAL SPECIES	81	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00620000089259	ENSGT00390000008673.c.b	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31
Coquerels sifaka	DUPLICATION
Coquerels sifaka	DUPLICATION
Coquerels sifaka	MODERN SPECIES	116	RPRM (ENSPCOG00000011465) #7	ARL6IP6 (ENSPCOG00000026472) #8	PRPF40A (ENSPCOG00000021456) #9	FMNL2 (ENSPCOG00000028832) #10	ENSPCOG00000017905	STAM2 (ENSPCOG00000015690) #11	CACNB4 (ENSPCOG00000024069) #12	ARL5A (ENSPCOG00000016563) #13	NEB (ENSPCOG00000014125) #14	RIF1 (ENSPCOG00000027888) #15	TNFAIP6 (ENSPCOG00000017912) #16	NMI (ENSPCOG00000028467) #17	RBM43 (ENSPCOG00000024727) #18	RND3 (ENSPCOG00000025763) #19	ENSPCOG00000028209	ENSPCOG00000015253 #22	LYPD6 (ENSPCOG00000024054) #23	LYPD6B (ENSPCOG00000024216) #24	KIF5C (ENSPCOG00000024550) #25	EPC2 (ENSPCOG00000016814) #27	MBD5 (ENSPCOG00000007503) #29	ORC4 (ENSPCOG00000005005) #30	ACVR2A (ENSPCOG00000016732) #31
Coquerels sifaka	MODERN SPECIES	83	PON3 (ENSPCOG00000026838)	PON2 (ENSPCOG00000023699)	ASB4 (ENSPCOG00000024006)	PDK4 (ENSPCOG00000015783)	DYNC1I1 (ENSPCOG00000018842)	SLC25A13 (ENSPCOG00000021703)	ENSPCOG00000025433	ENSPCOG00000018050	ENSPCOG00000022335	DLX6 (ENSPCOG00000018676)	DLX5 (ENSPCOG00000024882)	ENSPCOG00000016090	TAC1 (ENSPCOG00000021374)	ENSPCOG00000025256	C1GALT1 (ENSPCOG00000015839)	ENSPCOG00000018949 #22	COL28A1 (ENSPCOG00000022435)	MIOS (ENSPCOG00000011418)	RPA3 (ENSPCOG00000022659)	UMAD1 (ENSPCOG00000016044)	GLCCI1 (ENSPCOG00000008498)	ICA1 (ENSPCOG00000003590)	NXPH1 (ENSPCOG00000018464)	ENSPCOG00000018675
Coquerels sifaka	MODERN SPECIES	760	C11orf71 (ENSPCOG00000015231)	NNMT (ENSPCOG00000027693)	ZBTB16 (ENSPCOG00000004404)	HTR3A (ENSPCOG00000025438)	HTR3B (ENSPCOG00000013139)	ENSPCOG00000019270	USP28 (ENSPCOG00000018279)	ZW10 (ENSPCOG00000020599)	TMPRSS5 (ENSPCOG00000006628)	DRD2 (ENSPCOG00000007514)	TTC12 (ENSPCOG00000024368)	NCAM1 (ENSPCOG00000022925)	PTS (ENSPCOG00000024186)	BCO2 (ENSPCOG00000020109)	TEX12 (ENSPCOG00000023524)	ENSPCOG00000028355 #22	ENSPCOG00000024440	SDHD (ENSPCOG00000019028)	TIMM8B (ENSPCOG00000026969)	NKAPD1 (ENSPCOG00000003388)	PIH1D2 (ENSPCOG00000024160)	DLAT (ENSPCOG00000014290)	DIXDC1 (ENSPCOG00000014302)	C11orf52 (ENSPCOG00000016017)	HSPB2 (ENSPCOG00000023616)	CRYAB (ENSPCOG00000015670)	CFAP68 (ENSPCOG00000021613)	FDXACB1 (ENSPCOG00000027443)	ALG9 (ENSPCOG00000013221)	PPP2R1B (ENSPCOG00000022343)	SIK2 (ENSPCOG00000010314)
Greater bamboo lemur	MODERN SPECIES	1172														ENSPSMG00000005495	ENSPSMG00000005498	MMADHC (ENSPSMG00000005529) #22	LYPD6 (ENSPSMG00000005551) #23	LYPD6B (ENSPSMG00000005573) #24	KIF5C (ENSPSMG00000005639) #25	EPC2 (ENSPSMG00000005654) #27	MBD5 (ENSPSMG00000005699) #29	ENSPSMG00000005764	ORC4 (ENSPSMG00000005784) #30	ACVR2A (ENSPSMG00000005815) #31
Bushbaby	MODERN SPECIES	179							STAM2 (ENSOGAG00000016811) #11	CACNB4 (ENSOGAG00000011426) #12	ARL5A (ENSOGAG00000011424) #13	NEB (ENSOGAG00000006154) #14	RIF1 (ENSOGAG00000006141) #15	TNFAIP6 (ENSOGAG00000011099) #16	NMI (ENSOGAG00000002762) #17	RBM43 (ENSOGAG00000002761) #18	RND3 (ENSOGAG00000006980) #19	MMADHC (ENSOGAG00000034385) #22	LYPD6 (ENSOGAG00000009025) #23	LYPD6B (ENSOGAG00000009022) #24	KIF5C (ENSOGAG00000009021) #25	ENSOGAG00000027538	EPC2 (ENSOGAG00000009018) #27	MBD5 (ENSOGAG00000005182) #29	ENSOGAG00000007606	ORC4 (ENSOGAG00000004022) #30	ACVR2A (ENSOGAG00000004021) #31	ENSOGAG00000025795	ZEB2 (ENSOGAG00000010020) #34	GTDC1 (ENSOGAG00000001984) #35	ARHGAP15 (ENSOGAG00000001981) #36	KYNU (ENSOGAG00000001979) #37	ENSOGAG00000033357
Euarchontoglires_A	ANCESTRAL SPECIES	13	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00950000185140	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT00950000183208.A.c.a #34	ENSGT00900000143214	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555
Tree shrew	MODERN SPECIES	3558																ENSTBEG00000010789 #22
Glires	ANCESTRAL SPECIES	14	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00950000185140	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT00950000183208.A.c.a #34	ENSGT00900000143214	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555
Rodentia	ANCESTRAL SPECIES	14	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT00950000183208.A.c.a #34	ENSGT00900000143214	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555
Rodentia_B	ANCESTRAL SPECIES	12	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT00950000183208.A.c.a #34	ENSGT00900000143214	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555
Myomorpha	ANCESTRAL SPECIES	10	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT00950000183208.A.c.a #34	ENSGT00900000143214	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555
Muroidea	ANCESTRAL SPECIES	34	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT01100000263477.B.d.a.b	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT00950000183208.A.c.a #34	ENSGT00900000143214	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT01100000263477.B.d.a.b	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT00950000183208.A.c.a #34	ENSGT00900000143214	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555
Murinae	ANCESTRAL SPECIES	1	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT01100000263477.B.d.a.b	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT00950000183208.A.c.a #34	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00940000157521.b	ENSGT00550000074961	ENSGT00390000009566	ENSGT00940000153772.B
Mus	ANCESTRAL SPECIES	1	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT01100000263477.B.d.a.b	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT00950000183208.A.c.a #34	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00940000157521.b	ENSGT00550000074961	ENSGT00390000009566	ENSGT00940000153772.B
Mus_A	ANCESTRAL SPECIES		ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT01100000263477.B.d.a.b	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT00950000183208.A.c.a #34	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00940000157521.b	ENSGT00550000074961	ENSGT00390000009566	ENSGT00940000153772.B
Mus_B	ANCESTRAL SPECIES	1	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT01100000263477.B.d.a.b	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT00950000183208.A.c.a #34	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00940000157521.b	ENSGT00550000074961	ENSGT00390000009566	ENSGT00940000153772.B
Mus_C	ANCESTRAL SPECIES		ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT01100000263477.B.d.a.b	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT00950000183208.A.c.a #34	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00940000157521.b	ENSGT00390000012037.x	ENSGT00550000074961	ENSGT00390000009566
spretus	MODERN SPECIES	11	Galnt13 (MGP_SPRETEiJ_G0024485)	Rprm (MGP_SPRETEiJ_G0024484) #7	Arl6ip6 (MGP_SPRETEiJ_G0024483) #8	Prpf40a (MGP_SPRETEiJ_G0024482) #9	Fmnl2 (MGP_SPRETEiJ_G0024481) #10	Stam2 (MGP_SPRETEiJ_G0024480) #11	Cacnb4 (MGP_SPRETEiJ_G0024479) #12	Arl5a (MGP_SPRETEiJ_G0024478) #13	Neb (MGP_SPRETEiJ_G0024477) #14	Rif1 (MGP_SPRETEiJ_G0024476) #15	Tnfaip6 (MGP_SPRETEiJ_G0024475) #16	Nmi (MGP_SPRETEiJ_G0024474) #17	Rbm43 (MGP_SPRETEiJ_G0024473) #18	Tas2r134 (MGP_SPRETEiJ_G0024472)	Rnd3 (MGP_SPRETEiJ_G0024471) #19	Mmadhc (MGP_SPRETEiJ_G0024470) #22	Lypd6 (MGP_SPRETEiJ_G0024469) #23	Lypd6b (MGP_SPRETEiJ_G0024468) #24	Kif5c (MGP_SPRETEiJ_G0024467) #25	Epc2 (MGP_SPRETEiJ_G0024466) #27	MGP_SPRETEiJ_G0024465	Mbd5 (MGP_SPRETEiJ_G0024464) #29	Orc4 (MGP_SPRETEiJ_G0024463) #30	Acvr2a (MGP_SPRETEiJ_G0024462) #31	Zeb2 (MGP_SPRETEiJ_G0024461) #34	Gtdc1 (MGP_SPRETEiJ_G0024460) #35	Arhgap15 (MGP_SPRETEiJ_G0024459) #36	Kynu (MGP_SPRETEiJ_G0024458) #37	Lrp1b (MGP_SPRETEiJ_G0024457)	MGP_SPRETEiJ_G0024456	Ppp6c (MGP_SPRETEiJ_G0024455)
Steppe mouse	MODERN SPECIES	2583															ENSMSIG00000020673	Mmadhc (ENSMSIG00000020649) #22	Lypd6 (ENSMSIG00000020546) #23	Lypd6b (ENSMSIG00000020508) #24
Mouse	MODERN SPECIES	11	Galnt13 (ENSMUSG00000060988)	Rprm (ENSMUSG00000075334) #7	Arl6ip6 (ENSMUSG00000026960) #8	Prpf40a (ENSMUSG00000061136) #9	Fmnl2 (ENSMUSG00000036053) #10	Stam2 (ENSMUSG00000055371) #11	Cacnb4 (ENSMUSG00000017412) #12	Arl5a (ENSMUSG00000036093) #13	Neb (ENSMUSG00000026950) #14	Rif1 (ENSMUSG00000036202) #15	Tnfaip6 (ENSMUSG00000053475) #16	Nmi (ENSMUSG00000026946) #17	Rbm43 (ENSMUSG00000036249) #18	Tas2r134 (ENSMUSG00000056115)	Rnd3 (ENSMUSG00000017144) #19	Mmadhc (ENSMUSG00000026766) #22	Lypd6 (ENSMUSG00000050447) #23	Lypd6b (ENSMUSG00000026765) #24	Kif5c (ENSMUSG00000026764) #25	Epc2 (ENSMUSG00000069495) #27	Mbd5 (ENSMUSG00000036792) #29	Orc4 (ENSMUSG00000026761) #30	Acvr2a (ENSMUSG00000052155) #31	Zeb2 (ENSMUSG00000026872) #34	Gtdc1 (ENSMUSG00000036890) #35	Arhgap15 (ENSMUSG00000049744) #36	Kynu (ENSMUSG00000026866) #37	Lrp1b (ENSMUSG00000049252)	Ppp6c (ENSMUSG00000026753)	Scai (ENSMUSG00000035236)	Golga1 (ENSMUSG00000026754)
Ryukyu mouse	MODERN SPECIES	11	Galnt13 (MGP_CAROLIEiJ_G0023564)	Rprm (MGP_CAROLIEiJ_G0023563) #7	Arl6ip6 (MGP_CAROLIEiJ_G0023562) #8	Prpf40a (MGP_CAROLIEiJ_G0023561) #9	Fmnl2 (MGP_CAROLIEiJ_G0023560) #10	Stam2 (MGP_CAROLIEiJ_G0023559) #11	Cacnb4 (MGP_CAROLIEiJ_G0023558) #12	Arl5a (MGP_CAROLIEiJ_G0023557) #13	MGP_CAROLIEiJ_G0023556 #14	Rif1 (MGP_CAROLIEiJ_G0023555) #15	Tnfaip6 (MGP_CAROLIEiJ_G0023554) #16	Nmi (MGP_CAROLIEiJ_G0023553) #17	Rbm43 (MGP_CAROLIEiJ_G0023552) #18	Tas2r134 (MGP_CAROLIEiJ_G0023551)	Rnd3 (MGP_CAROLIEiJ_G0023550) #19	Mmadhc (MGP_CAROLIEiJ_G0023549) #22	Lypd6 (MGP_CAROLIEiJ_G0023548) #23	Lypd6b (MGP_CAROLIEiJ_G0023547) #24	Kif5c (MGP_CAROLIEiJ_G0023546) #25	Epc2 (MGP_CAROLIEiJ_G0023545) #27	Mbd5 (MGP_CAROLIEiJ_G0023544) #29	Orc4 (MGP_CAROLIEiJ_G0023543) #30	Acvr2a (MGP_CAROLIEiJ_G0023542) #31	Zeb2 (MGP_CAROLIEiJ_G0023541) #34	Gtdc1 (MGP_CAROLIEiJ_G0023540) #35	Arhgap15 (MGP_CAROLIEiJ_G0023539) #36	MGP_CAROLIEiJ_G0023538 #37	Lrp1b (MGP_CAROLIEiJ_G0023537)	MGP_CAROLIEiJ_G0023536	Ppp6c (MGP_CAROLIEiJ_G0023535)	Scai (MGP_CAROLIEiJ_G0023534)
Shrew mouse	MODERN SPECIES	16	Galnt13 (MGP_PahariEiJ_G0025015)	Rprm (MGP_PahariEiJ_G0025014) #7	Arl6ip6 (MGP_PahariEiJ_G0025013) #8	Prpf40a (MGP_PahariEiJ_G0025012) #9	Fmnl2 (MGP_PahariEiJ_G0025011) #10	Stam2 (MGP_PahariEiJ_G0025010) #11	Cacnb4 (MGP_PahariEiJ_G0025009) #12	Arl5a (MGP_PahariEiJ_G0025008) #13	MGP_PahariEiJ_G0025007 #14	Rif1 (MGP_PahariEiJ_G0025006) #15	Tnfaip6 (MGP_PahariEiJ_G0025005) #16	Nmi (MGP_PahariEiJ_G0025004) #17	Rbm43 (MGP_PahariEiJ_G0025003) #18	Tas2r134 (MGP_PahariEiJ_G0025002)	Rnd3 (MGP_PahariEiJ_G0025001) #19	Mmadhc (MGP_PahariEiJ_G0025000) #22	Lypd6 (MGP_PahariEiJ_G0024999) #23	Lypd6b (MGP_PahariEiJ_G0024998) #24	Kif5c (MGP_PahariEiJ_G0024997) #25	Epc2 (MGP_PahariEiJ_G0024996) #27	Mbd5 (MGP_PahariEiJ_G0024995) #29	Orc4 (MGP_PahariEiJ_G0024994) #30	Acvr2a (MGP_PahariEiJ_G0024993) #31	Zeb2 (MGP_PahariEiJ_G0024992) #34	Gtdc1 (MGP_PahariEiJ_G0024991) #35	Arhgap15 (MGP_PahariEiJ_G0024990) #36	Kynu (MGP_PahariEiJ_G0024989) #37	Lrp1b (MGP_PahariEiJ_G0024988)	Ppp6c (MGP_PahariEiJ_G0024987)	Scai (MGP_PahariEiJ_G0024986)	Golga1 (MGP_PahariEiJ_G0024985)
Rat	MODERN SPECIES	13	Fmnl2 (ENSRNOG00000055567) #10	Dppa5 (ENSRNOG00000029793)	Ndufa2-ps1 (ENSRNOG00000064291)	Stam2 (ENSRNOG00000027447) #11	Cacnb4 (ENSRNOG00000007666) #12	Arl5a (ENSRNOG00000006839) #13	AABR07052125.1 (ENSRNOG00000006829)	Neb (ENSRNOG00000006783) #14	Rif1 (ENSRNOG00000054901) #15	ENSRNOG00000071171	Tnfaip6 (ENSRNOG00000050792) #16	Nmi (ENSRNOG00000027502) #17	Tas2r134 (ENSRNOG00000027510)	Rnd3 (ENSRNOG00000004624) #19	LOC499796 (ENSRNOG00000028112)	Mmadhc (ENSRNOG00000004740) #22	Hnrnpa1-ps20 (ENSRNOG00000005951)	LOC120101547 (ENSRNOG00000048601)	Lypd6 (ENSRNOG00000068044) #23	Ns5atp4-ps3 (ENSRNOG00000027533)	Lypd6b (ENSRNOG00000004614) #24	Kif5c (ENSRNOG00000004680) #25	Epc2 (ENSRNOG00000029447) #27	Mbd5 (ENSRNOG00000027596) #29	Orc4 (ENSRNOG00000005021) #30	Acvr2a (ENSRNOG00000005334) #31	ENSRNOG00000062624	ENSRNOG00000067798	Zeb2 (ENSRNOG00000004677) #34	Gtdc1 (ENSRNOG00000031038) #35	Arhgap15 (ENSRNOG00000031168) #36
Cricetidae	ANCESTRAL SPECIES	12	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT01100000263477.B.d.a.b	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT00950000183208.A.c.a #34	ENSGT00900000143214	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555
Cricetidae_B	ANCESTRAL SPECIES	7	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT01100000263477.B.d.a.b	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT00950000183208.A.c.a #34	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00940000157521.b	ENSGT00900000141555	ENSGT00950000182883.b.a.a	ENSGT00940000155953
Northern American deer mouse	MODERN SPECIES	17	Rprm (ENSPEMG00000014265) #7	Arl6ip6 (ENSPEMG00000001460) #8	Prpf40a (ENSPEMG00000020838) #9	Fmnl2 (ENSPEMG00000021308) #10	Stam2 (ENSPEMG00000012476) #11	Cacnb4 (ENSPEMG00000000044) #12	ENSPEMG00000010335 #13	Neb (ENSPEMG00000011241) #14	Rif1 (ENSPEMG00000000446) #15	Tnfaip6 (ENSPEMG00000009635) #16	Nmi (ENSPEMG00000013860) #17	Rbm43 (ENSPEMG00000009267) #18	Tas2r134 (ENSPEMG00000026859)	Rnd3 (ENSPEMG00000030018) #19	ENSPEMG00000028309	Mmadhc (ENSPEMG00000015462) #22	Lypd6 (ENSPEMG00000030454) #23	Lypd6b (ENSPEMG00000030753) #24	Kif5c (ENSPEMG00000013456) #25	Epc2 (ENSPEMG00000008844) #27	Mbd5 (ENSPEMG00000012335) #29	Orc4 (ENSPEMG00000013503) #30	Acvr2a (ENSPEMG00000025982) #31	ENSPEMG00000030197	ENSPEMG00000008317	ENSPEMG00000029306	ENSPEMG00000009353	Zeb2 (ENSPEMG00000004029) #34	Gtdc1 (ENSPEMG00000006747) #35	Arhgap15 (ENSPEMG00000008557) #36	Kynu (ENSPEMG00000011128) #37
Prairie vole	MODERN SPECIES	12	Kcnj3 (ENSMOCG00000020988)	Galnt13 (ENSMOCG00000014596)	Rprm (ENSMOCG00000002172) #7	Arl6ip6 (ENSMOCG00000016947) #8	Prpf40a (ENSMOCG00000009517) #9	Fmnl2 (ENSMOCG00000022812) #10	Stam2 (ENSMOCG00000003177) #11	Cacnb4 (ENSMOCG00000022468) #12	Arl5a (ENSMOCG00000019795) #13	Neb (ENSMOCG00000022729) #14	Rif1 (ENSMOCG00000009381) #15	Tnfaip6 (ENSMOCG00000003915) #16	ENSMOCG00000011562	Rbm43 (ENSMOCG00000007686) #18	Rnd3 (ENSMOCG00000019178) #19	Mmadhc (ENSMOCG00000012955) #22	Lypd6 (ENSMOCG00000006453) #23	Lypd6b (ENSMOCG00000020650) #24	Kif5c (ENSMOCG00000001353) #25	Epc2 (ENSMOCG00000003346) #27	Mbd5 (ENSMOCG00000019347) #29	Orc4 (ENSMOCG00000008587) #30	Acvr2a (ENSMOCG00000001323) #31	ENSMOCG00000007379	Zeb2 (ENSMOCG00000016943) #34	Gtdc1 (ENSMOCG00000022059) #35	Arhgap15 (ENSMOCG00000022212) #36	Kynu (ENSMOCG00000018120) #37	ENSMOCG00000021528	ENSMOCG00000020186	ENSMOCG00000001529
Cricetinae	ANCESTRAL SPECIES	1	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT00950000183208.A.c.a #34	ENSGT00900000143214	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555
Chinese hamster chok1gshd	MODERN SPECIES	188	Rprm (ENSCGRG00001009462) #7	Arl6ip6 (ENSCGRG00001021408) #8	Prpf40a (ENSCGRG00001022526) #9	Fmnl2 (ENSCGRG00001024179) #10	Stam2 (ENSCGRG00001023878) #11	Cacnb4 (ENSCGRG00001023366) #12	Arl5a (ENSCGRG00001024645) #13	Neb (ENSCGRG00001022624) #14	Rif1 (ENSCGRG00001024589) #15	Tnfaip6 (ENSCGRG00001024845) #16	Nmi (ENSCGRG00001000480) #17	Rbm43 (ENSCGRG00001011129) #18	ENSCGRG00001014515	Tas2r134 (ENSCGRG00001008402)	Rnd3 (ENSCGRG00001018416) #19	Mmadhc (ENSCGRG00001008423) #22	Lypd6 (ENSCGRG00001009801) #23	Lypd6b (ENSCGRG00001008503) #24	Kif5c (ENSCGRG00001021373) #25	Epc2 (ENSCGRG00001024568) #27	Mbd5 (ENSCGRG00001001266) #29	Orc4 (ENSCGRG00001001352) #30	Acvr2a (ENSCGRG00001024754) #31	ENSCGRG00001000890	Zeb2 (ENSCGRG00001003812) #34	ENSCGRG00001006690	Gtdc1 (ENSCGRG00001014426) #35	ENSCGRG00001008381	Arhgap15 (ENSCGRG00001011371) #36	Kynu (ENSCGRG00001005556) #37	ENSCGRG00001012428
Golden Hamster	MODERN SPECIES	633	Nr4a2 (ENSMAUG00000009371)	ENSMAUG00000018084	Galnt13 (ENSMAUG00000007643)	Rprm (ENSMAUG00000018060) #7	Arl6ip6 (ENSMAUG00000001987) #8	Prpf40a (ENSMAUG00000020074) #9	Fmnl2 (ENSMAUG00000013048) #10	Stam2 (ENSMAUG00000000322) #11	Cacnb4 (ENSMAUG00000014567) #12	Arl5a (ENSMAUG00000011769) #13	Neb (ENSMAUG00000004953) #14	Rif1 (ENSMAUG00000013158) #15	Nmi (ENSMAUG00000011421) #17	Rbm43 (ENSMAUG00000012908) #18	Rnd3 (ENSMAUG00000011617) #19	Mmadhc (ENSMAUG00000011028) #22	Lypd6 (ENSMAUG00000009256) #23	Lypd6b (ENSMAUG00000013712) #24	Kif5c (ENSMAUG00000009793) #25	ENSMAUG00000001219 #27	ENSMAUG00000000214 #29	Orc4 (ENSMAUG00000013801) #30	Acvr2a (ENSMAUG00000018729) #31	ENSMAUG00000017030	ENSMAUG00000016231	Zeb2 (ENSMAUG00000015393) #34	Gtdc1 (ENSMAUG00000001170) #35	Arhgap15 (ENSMAUG00000012165) #36	Kynu (ENSMAUG00000013067) #37	ENSMAUG00000009235	Lrp1b (ENSMAUG00000019371)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1881							ENSNGAG00000011525 #14	Rif1 (ENSNGAG00000009268) #15	Tnfaip6 (ENSNGAG00000007671) #16	ENSNGAG00000013509	Rbm43 (ENSNGAG00000016028) #18	Tas2r134 (ENSNGAG00000015380)	Rnd3 (ENSNGAG00000001477) #19	ENSNGAG00000000384	ENSNGAG00000014803	Mmadhc (ENSNGAG00000008470) #22	Lypd6 (ENSNGAG00000010779) #23	Lypd6b (ENSNGAG00000012606) #24	Kif5c (ENSNGAG00000020904) #25	Epc2 (ENSNGAG00000015488) #27	Mbd5 (ENSNGAG00000018784) #29	Orc4 (ENSNGAG00000012001) #30	Acvr2a (ENSNGAG00000020006) #31	Zeb2 (ENSNGAG00000016618) #34	ENSNGAG00000000981	Gtdc1 (ENSNGAG00000011627) #35	Arhgap15 (ENSNGAG00000003717) #36	Kynu (ENSNGAG00000015519) #37	ENSNGAG00000005556	Lrp1b (ENSNGAG00000000689)	ENSNGAG00000009773
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	46	ENSJJAG00000023428	Arl6ip6 (ENSJJAG00000019266) #8	Prpf40a (ENSJJAG00000004636) #9	Fmnl2 (ENSJJAG00000021375) #10	Stam2 (ENSJJAG00000009817) #11	Cacnb4 (ENSJJAG00000016900) #12	ENSJJAG00000015512 #13	Neb (ENSJJAG00000012568) #14	Rif1 (ENSJJAG00000023000) #15	Tnfaip6 (ENSJJAG00000020536) #16	Nmi (ENSJJAG00000011126) #17	Rbm43 (ENSJJAG00000000368) #18	ENSJJAG00000011149	Rnd3 (ENSJJAG00000015179) #19	ENSJJAG00000011930	ENSJJAG00000012494 #22	Lypd6 (ENSJJAG00000020503) #23	Lypd6b (ENSJJAG00000011004) #24	ENSJJAG00000021666 #25	Epc2 (ENSJJAG00000023818) #27	Mbd5 (ENSJJAG00000023609) #29	Orc4 (ENSJJAG00000011085) #30	Acvr2a (ENSJJAG00000014798) #31	ENSJJAG00000017205	ENSJJAG00000000614	ENSJJAG00000011334	Zeb2 (ENSJJAG00000015138) #34	ENSJJAG00000012093	Gtdc1 (ENSJJAG00000022232) #35	Arhgap15 (ENSJJAG00000002439) #36	Kynu (ENSJJAG00000011644) #37
Lesser Egyptian jerboa	MODERN SPECIES	42	Washc4 (ENSJJAG00000019116)	Aldh1l2 (ENSJJAG00000014933)	Nopchap1 (ENSJJAG00000021635)	Slc41a2 (ENSJJAG00000020225)	Chst11 (ENSJJAG00000021100)	Txnrd1 (ENSJJAG00000011665)	Eid3 (ENSJJAG00000004838)	ENSJJAG00000021684	Hcfc2 (ENSJJAG00000019901)	Glt8d2 (ENSJJAG00000017860)	ENSJJAG00000022782	Hsp90b1 (ENSJJAG00000020393)	Ttc41 (ENSJJAG00000009462)	Nt5dc3 (ENSJJAG00000017888)	Stab2 (ENSJJAG00000015484)	ENSJJAG00000018477 #22	Ascl1 (ENSJJAG00000016132)	Pah (ENSJJAG00000017337)	ENSJJAG00000019988	Pmch (ENSJJAG00000021592)	ENSJJAG00000021125	Nup37 (ENSJJAG00000018864)	Washc3 (ENSJJAG00000019930)	Dram1 (ENSJJAG00000023953)	ENSJJAG00000022706	Sycp3 (ENSJJAG00000017653)	ENSJJAG00000001967	Mybpc1 (ENSJJAG00000020768)	ENSJJAG00000020719	Utp20 (ENSJJAG00000019321)	Slc5a8 (ENSJJAG00000018761)
Kangaroo rat	MODERN SPECIES	324	Rprm (ENSDORG00000003407) #7	ENSDORG00000028417	Arl6ip6 (ENSDORG00000006761) #8	Prpf40a (ENSDORG00000006757) #9	Fmnl2 (ENSDORG00000029929) #10	Stam2 (ENSDORG00000007927) #11	Cacnb4 (ENSDORG00000007926) #12	ENSDORG00000003082 #13	Neb (ENSDORG00000004258) #14	Tnfaip6 (ENSDORG00000016446) #16	ENSDORG00000028394	Nmi (ENSDORG00000024973) #17	ENSDORG00000009537 #18	ENSDORG00000023373	Rnd3 (ENSDORG00000024571) #19	Mmadhc (ENSDORG00000000305) #22	Lypd6 (ENSDORG00000023908) #23	Lypd6b (ENSDORG00000013117) #24	Kif5c (ENSDORG00000006160) #25	Epc2 (ENSDORG00000001353) #27	ENSDORG00000014257 #29	ENSDORG00000026847	Orc4 (ENSDORG00000014453) #30	Acvr2a (ENSDORG00000014448) #31	ENSDORG00000028052
Rodentia_A	ANCESTRAL SPECIES	13	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT00950000183208.A.c.a #34	ENSGT00900000143214	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953
Hystricomorpha	ANCESTRAL SPECIES	20	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT00950000183208.A.c.a #34	ENSGT00900000143214	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953
Hystricomorpha_a	ANCESTRAL SPECIES	17	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT00950000183208.A.c.a #34	ENSGT00900000143214	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953
Hystricomorpha_b	ANCESTRAL SPECIES	67	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT00950000183208.A.c.a #34	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862
Degu	DUPLICATION
Degu	MODERN SPECIES	123	ENSODEG00000004433	STAM2 (ENSODEG00000004336) #11	ENSODEG00000019186	ENSODEG00000004294	CACNB4 (ENSODEG00000003835) #12	ENSODEG00000003628 #13	ENSODEG00000003755	NEB (ENSODEG00000004729) #14	RIF1 (ENSODEG00000003950) #15	TNFAIP6 (ENSODEG00000003733) #16	NMI (ENSODEG00000003668) #17	RBM43 (ENSODEG00000003642) #18	ENSODEG00000018963	RND3 (ENSODEG00000003549) #19	ENSODEG00000003457	ENSODEG00000003416 #22	LYPD6 (ENSODEG00000003357) #23	LYPD6B (ENSODEG00000003306) #24	ENSODEG00000018967	KIF5C (ENSODEG00000003161) #25	EPC2 (ENSODEG00000003123) #27	ENSODEG00000003098	ENSODEG00000003076 #29	ENSODEG00000018860	ENSODEG00000002909	ENSODEG00000002882	ORC4 (ENSODEG00000007273) #30	ACVR2A (ENSODEG00000007139) #31	ZEB2 (ENSODEG00000006916) #34	ENSODEG00000006826	ENSODEG00000006741 #35
Degu	MODERN SPECIES	58																ENSODEG00000014810 #22	ENSODEG00000016922	EPHX1 (ENSODEG00000014812)	ENSODEG00000015075	ENAH (ENSODEG00000014853)	ENSODEG00000015198	CNIH3 (ENSODEG00000015526)	WDR26 (ENSODEG00000014639)	CNIH4 (ENSODEG00000014547)	NVL (ENSODEG00000015119)	DEGS1 (ENSODEG00000014645)	ENSODEG00000015588	ENSODEG00000015647	TP53BP2 (ENSODEG00000014627)	CAPN2 (ENSODEG00000014888)	ENSODEG00000015314
Long-tailed chinchilla	MODERN SPECIES	147		KCNJ3 (ENSCLAG00000004537)	GALNT13 (ENSCLAG00000004217)	PRPF40A (ENSCLAG00000001774) #9	FMNL2 (ENSCLAG00000001515) #10	STAM2 (ENSCLAG00000001380) #11	CACNB4 (ENSCLAG00000005759) #12	ENSCLAG00000005398 #13	NEB (ENSCLAG00000002157) #14	RIF1 (ENSCLAG00000001517) #15	TNFAIP6 (ENSCLAG00000002857) #16	NMI (ENSCLAG00000002759) #17	RBM43 (ENSCLAG00000002635) #18	ENSCLAG00000002555 #19	ENSCLAG00000002537	MMADHC (ENSCLAG00000002129) #22	LYPD6 (ENSCLAG00000001952) #23	LYPD6B (ENSCLAG00000002017) #24	KIF5C (ENSCLAG00000001868) #25	EPC2 (ENSCLAG00000001768) #27	MBD5 (ENSCLAG00000001690) #29	ORC4 (ENSCLAG00000002811) #30	ACVR2A (ENSCLAG00000002708) #31	ZEB2 (ENSCLAG00000002230) #34	GTDC1 (ENSCLAG00000007819) #35	ARHGAP15 (ENSCLAG00000006756) #36	KYNU (ENSCLAG00000005935) #37	LRP1B (ENSCLAG00000002036)	NXPH2 (ENSCLAG00000017455)	SPOPL (ENSCLAG00000001710)	HNMT (ENSCLAG00000001523)
Guinea pig	MODERN SPECIES	3	GALNT13 (ENSCPOG00000013115)	RPRM (ENSCPOG00000005597) #7	PRPF40A (ENSCPOG00000013494) #9	FMNL2 (ENSCPOG00000013482) #10	STAM2 (ENSCPOG00000002847) #11	CACNB4 (ENSCPOG00000026052) #12	ARL5A (ENSCPOG00000005209) #13	NEB (ENSCPOG00000005161) #14	RIF1 (ENSCPOG00000037898) #15	ENSCPOG00000038795	TNFAIP6 (ENSCPOG00000007974) #16	NMI (ENSCPOG00000013053) #17	RBM43 (ENSCPOG00000037758) #18	ENSCPOG00000033292	RND3 (ENSCPOG00000035751) #19	MMADHC (ENSCPOG00000007690) #22	LYPD6 (ENSCPOG00000007686) #23	LYPD6B (ENSCPOG00000034526) #24	KIF5C (ENSCPOG00000026278) #25	EPC2 (ENSCPOG00000008502) #27	MBD5 (ENSCPOG00000006236) #29	ORC4 (ENSCPOG00000008580) #30	ACVR2A (ENSCPOG00000008575) #31	ZEB2 (ENSCPOG00000004182) #34	ENSCPOG00000035797	GTDC1 (ENSCPOG00000007030) #35	ARHGAP15 (ENSCPOG00000007467) #36	KYNU (ENSCPOG00000011220) #37	ENSCPOG00000021859	ENSCPOG00000038865	LRP1B (ENSCPOG00000014122)
Naked mole-rat female	MODERN SPECIES	22	ENSHGLG00000037482	ENSHGLG00000050584	ENSHGLG00000013230	ENSHGLG00000012563	NCKAP1 (ENSHGLG00000012280)	FRZB (ENSHGLG00000011729)	ENSHGLG00000009430	ENSHGLG00000001353	NMI (ENSHGLG00000034716) #17	ENSHGLG00000001571 #18	ENSHGLG00000037472	ENSHGLG00000049018	ENSHGLG00000044159 #19	ENSHGLG00000014111	ENSHGLG00000044811	ENSHGLG00000011653 #22	ENSHGLG00000010446 #23	ENSHGLG00000008540	LYPD6B (ENSHGLG00000037498) #24	ENSHGLG00000020241	ENSHGLG00000003241	KIF5C (ENSHGLG00000002894) #25	EPC2 (ENSHGLG00000001526) #27	ENSHGLG00000042407	ENSHGLG00000045749	MBD5 (ENSHGLG00000000588) #29	ENSHGLG00000012065	ENSHGLG00000042968	ORC4 (ENSHGLG00000035874) #30	ACVR2A (ENSHGLG00000046847) #31	ENSHGLG00000036243
Sciuridae	ANCESTRAL SPECIES	10	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.fb.a #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00490000043329.a.a.a.k.a	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00940000158526.c.b #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT00950000183208.A.c.a #34	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862
Marmotini	ANCESTRAL SPECIES	2	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.fb.a #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00490000043329.a.a.a.k.a	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00940000158526.c.b #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT00950000183208.A.c.a #34	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862
Marmotini_b	ANCESTRAL SPECIES	10	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.fb.a #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00490000043329.a.a.a.k.a	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00940000158526.c.b #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT00950000183208.A.c.a #34	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862
Squirrel	MODERN SPECIES	69	GALNT13 (ENSSTOG00000011628)	RPRM (ENSSTOG00000026311) #7	ARL6IP6 (ENSSTOG00000001658) #8	PRPF40A (ENSSTOG00000001642) #9	FMNL2 (ENSSTOG00000001614) #10	STAM2 (ENSSTOG00000025023) #11	CACNB4 (ENSSTOG00000016328) #12	ARL5A (ENSSTOG00000016326) #13	NEB (ENSSTOG00000016315) #14	RIF1 (ENSSTOG00000020712) #15	TNFAIP6 (ENSSTOG00000016314) #16	NMI (ENSSTOG00000028659) #17	RBM43 (ENSSTOG00000016311) #18	ENSSTOG00000021862	RND3 (ENSSTOG00000009798) #19	MMADHC (ENSSTOG00000021576) #22	LYPD6 (ENSSTOG00000029572) #23	LYPD6B (ENSSTOG00000021300) #24	KIF5C (ENSSTOG00000008408) #25	EPC2 (ENSSTOG00000010468) #27	MBD5 (ENSSTOG00000024028) #29	ORC4 (ENSSTOG00000026092) #30	ACVR2A (ENSSTOG00000025105) #31	ENSSTOG00000032731	ZEB2 (ENSSTOG00000003811) #34	GTDC1 (ENSSTOG00000016373) #35	ARHGAP15 (ENSSTOG00000009312) #36	KYNU (ENSSTOG00000009286) #37	LRP1B (ENSSTOG00000002686)	ENSSTOG00000031059	NXPH2 (ENSSTOG00000001587)
Arctic ground squirrel	MODERN SPECIES	3	ARL6IP6 (ENSUPAG00010000239) #8	PRPF40A (ENSUPAG00010000254) #9	FMNL2 (ENSUPAG00010000658) #10	STAM2 (ENSUPAG00010001468) #11	ENSUPAG00010001568	CACNB4 (ENSUPAG00010001584) #12	ENSUPAG00010001737 #13	NEB (ENSUPAG00010001764) #14	RIF1 (ENSUPAG00010002377) #15	TNFAIP6 (ENSUPAG00010004346) #16	NMI (ENSUPAG00010004358) #17	RBM43 (ENSUPAG00010004382) #18	ENSUPAG00010004388	ENSUPAG00010004396	RND3 (ENSUPAG00010004413) #19	MMADHC (ENSUPAG00010004432) #22	LYPD6 (ENSUPAG00010004464) #23	LYPD6B (ENSUPAG00010004479) #24	KIF5C (ENSUPAG00010004496) #25	EPC2 (ENSUPAG00010004529) #27	ENSUPAG00010004532	ENSUPAG00010004533	MBD5 (ENSUPAG00010004537) #29	ORC4 (ENSUPAG00010004557) #30	ACVR2A (ENSUPAG00010004582) #31	ENSUPAG00010004608	ZEB2 (ENSUPAG00010004644) #34	GTDC1 (ENSUPAG00010004826) #35	ARHGAP15 (ENSUPAG00010004846) #36	KYNU (ENSUPAG00010004892) #37	LRP1B (ENSUPAG00010004938)
Alpin marmot	MODERN SPECIES	5	ENSMMMG00000022120	STAM2 (ENSMMMG00000022104) #11	CACNB4 (ENSMMMG00000022074) #12	ENSMMMG00000022061 #13	NEB (ENSMMMG00000021921) #14	RIF1 (ENSMMMG00000021851) #15	TNFAIP6 (ENSMMMG00000021834) #16	ENSMMMG00000021827	NMI (ENSMMMG00000021825) #17	RBM43 (ENSMMMG00000021824) #18	ENSMMMG00000021801	ENSMMMG00000021776	ENSMMMG00000021771	ENSMMMG00000021752	RND3 (ENSMMMG00000021746) #19	MMADHC (ENSMMMG00000021733) #22	LYPD6 (ENSMMMG00000021723) #23	LYPD6B (ENSMMMG00000021702) #24	KIF5C (ENSMMMG00000021654) #25	ENSMMMG00000021646	EPC2 (ENSMMMG00000021637) #27	ENSMMMG00000021627	ENSMMMG00000021626 #29	ENSMMMG00000021615 #30	ENSMMMG00000021598	ACVR2A (ENSMMMG00000021587) #31	ZEB2 (ENSMMMG00000021492) #34	GTDC1 (ENSMMMG00000021476) #35	ENSMMMG00000021461	ARHGAP15 (ENSMMMG00000021442) #36	KYNU (ENSMMMG00000021410) #37
Eurasian red squirrel	MODERN SPECIES	12	FMNL2 (ENSSVLG00005007277) #10	STAM2 (ENSSVLG00005007197) #11	ENSSVLG00005007179	CACNB4 (ENSSVLG00005005336) #12	ENSSVLG00005004741 #13	ENSSVLG00005004729	NEB (ENSSVLG00005004118) #14	RIF1 (ENSSVLG00005003716) #15	TNFAIP6 (ENSSVLG00005003640) #16	ENSSVLG00005003622	ENSSVLG00005003611 #17	RBM43 (ENSSVLG00005003593) #18	ENSSVLG00005003570	RND3 (ENSSVLG00005003560) #19	ENSSVLG00005003548	MMADHC (ENSSVLG00005003507) #22	LYPD6 (ENSSVLG00005003472) #23	LYPD6B (ENSSVLG00005003456) #24	KIF5C (ENSSVLG00005003411) #25	EPC2 (ENSSVLG00005003372) #27	MBD5 (ENSSVLG00005003333) #29	ORC4 (ENSSVLG00005003298) #30	ACVR2A (ENSSVLG00005003270) #31	ENSSVLG00005003233	ENSSVLG00005003222	ENSSVLG00005003208	ENSSVLG00005003174 #34	GTDC1 (ENSSVLG00005003107) #35	ARHGAP15 (ENSSVLG00005003035) #36	KYNU (ENSSVLG00005002948) #37	ENSSVLG00005002904
Lagomorpha	ANCESTRAL SPECIES	12	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00950000185140	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #19	ENSGT00390000015050 #22	ENSGT00390000000220.B #23	ENSGT00390000000220.A #24	ENSGT00940000158539 #25	ENSGT00940000158526 #27	ENSGT00530000064137.a.b #29	ENSGT00390000016542 #30	ENSGT00940000157233 #31	ENSGT00950000183208.A.c.a #34	ENSGT00900000143214	ENSGT00390000006631 #35	ENSGT00950000182860.a.b.b #36	ENSGT00390000008033 #37	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862
Rabbit	MODERN SPECIES	18	ENSOCUG00000037766 #9	ENSOCUG00000013216 #10	STAM2 (ENSOCUG00000000344) #11	ENSOCUG00000000144 #12	ARL5A (ENSOCUG00000035346) #13	NEB (ENSOCUG00000017458) #14	ENSOCUG00000035924	RIF1 (ENSOCUG00000017435) #15	TNFAIP6 (ENSOCUG00000013688) #16	ENSOCUG00000038635	NMI (ENSOCUG00000001001) #17	RBM43 (ENSOCUG00000026185) #18	ENSOCUG00000025786	ENSOCUG00000036417	RND3 (ENSOCUG00000001751) #19	MMADHC (ENSOCUG00000008124) #22	LYPD6 (ENSOCUG00000008118) #23	ENSOCUG00000030777	LYPD6B (ENSOCUG00000008346) #24	KIF5C (ENSOCUG00000009699) #25	EPC2 (ENSOCUG00000012712) #27	ENSOCUG00000034178	ENSOCUG00000033587	MBD5 (ENSOCUG00000010432) #29	ORC4 (ENSOCUG00000016412) #30	ACVR2A (ENSOCUG00000016398) #31	ENSOCUG00000030462	ZEB2 (ENSOCUG00000027880) #34	ENSOCUG00000038697	GTDC1 (ENSOCUG00000002102) #35	ARHGAP15 (ENSOCUG00000000471) #36
Pika	MODERN SPECIES	6565																MMADHC (ENSOPRG00000000804) #22