Euteleostomi	ANCESTRAL SPECIES	31						ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00940000165390	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166136	ENSGT00950000182883.b.a.a
Sarcopterygii	ANCESTRAL SPECIES	14	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00940000154533.b.c.a ##14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000181625	ENSGT00940000157521.b	ENSGT00940000166136
Tetrapoda	ANCESTRAL SPECIES	6	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166136	ENSGT00950000182883.b.a.a
Amniota	ANCESTRAL SPECIES	6	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT01000000220430	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00960000193288	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862
Mammalia	ANCESTRAL SPECIES	6	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT01000000220430	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00960000193288	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862
Theria	ANCESTRAL SPECIES	5	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00960000193288	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b
Eutheria	ANCESTRAL SPECIES	10	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00960000193288	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b
Boreoeutheria	ANCESTRAL SPECIES	14	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00950000185140	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b
Euarchontoglires	ANCESTRAL SPECIES	14	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00950000185140	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b
Primates	ANCESTRAL SPECIES	13	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a
Haplorrhini	ANCESTRAL SPECIES	10	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.v #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a
Simiiformes	ANCESTRAL SPECIES	15	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.v #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000154530.r.b.b	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a
Catarrhini	ANCESTRAL SPECIES	16	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00620000089259	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.v #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00910000147393	ENSGT00530000063686.a.b #18	ENSGT00940000154530.r.b.b	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00910000146654 #28	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a.e	ENSGT00900000143214	ENSGT00910000147897	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b
Cercopithecidae	ANCESTRAL SPECIES	13	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00620000089259	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.v #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00910000147393	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00940000153201.j.k.b #21	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00910000146654 #28	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a.e	ENSGT00900000143214	ENSGT00910000147897	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b
Cercopithecinae	ANCESTRAL SPECIES	11	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.v #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00910000147393	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00940000153201.j.k.a.a.b.a.b ##21	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00910000146654 #28	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a.e	ENSGT00900000143214	ENSGT00910000147897	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b
Cercopithecinae_a	ANCESTRAL SPECIES	16	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.v #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00910000147393	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00940000153201.j.k.a.a.b.a.b ##21	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00910000146654 #28	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT01020000230615	ENSGT00950000183208.A.c.a.e	ENSGT00900000143214	ENSGT00910000147897	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033
Cercopithecinae_b	ANCESTRAL SPECIES	10	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.v #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00910000147393	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00940000153201.j.k.a.a.b.a.b ##21	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00910000146654 #28	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT01040000240515.h #33	ENSGT01020000230615	ENSGT00950000183208.A.c.a.e	ENSGT00900000143214	ENSGT00910000147897	ENSGT00390000006631	ENSGT00950000182860.a.b.b
Olive baboon	MODERN SPECIES	1	RPRM (ENSPANG00000016888) #7	ARL6IP6 (ENSPANG00000018067) #8	PRPF40A (ENSPANG00000022095) #9	FMNL2 (ENSPANG00000008524) #10	STAM2 (ENSPANG00000025044) #11	CACNB4 (ENSPANG00000008398) #12	ENSPANG00000009772 #13	NEB (ENSPANG00000005536) #14	RIF1 (ENSPANG00000008525) #15	TNFAIP6 (ENSPANG00000021874) #16	NMI (ENSPANG00000006057) #17	RBM43 (ENSPANG00000009533) #18	ENSPANG00000047432 #19	RND3 (ENSPANG00000015939) #20	ENSPANG00000009096 #21	MMADHC (ENSPANG00000019761) #22	ENSPANG00000038761 #23	ENSPANG00000048846 #24	LYPD6 (ENSPANG00000019895) #25	LYPD6B (ENSPANG00000022096) #26	KIF5C (ENSPANG00000018689) #27	ENSPANG00000042526 #28	EPC2 (ENSPANG00000009534) #29	MBD5 (ENSPANG00000015848) #30	ORC4 (ENSPANG00000009846) #31	ACVR2A (ENSPANG00000012445) #32	ENSPANG00000035057 #33	CLIC1 (ENSPANG00000019928) #34	ENSPANG00000015679 #35	ENSPANG00000003757 #36	ENSPANG00000043648 #37
Cercopithecinae_d	ANCESTRAL SPECIES		ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.v #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00910000147393	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00940000153201.j.k.a.a.b.a.b ##21	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT01040000240515.h #33	ENSGT01020000230615	ENSGT00950000183208.A.c.a.e	ENSGT00900000143214	ENSGT00910000147897	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033
Sooty mangabey	MODERN SPECIES	480	ARL6IP6 (ENSCATG00000037038) #8	PRPF40A (ENSCATG00000043798) #9	ENSCATG00000039643	FMNL2 (ENSCATG00000030795) #10	STAM2 (ENSCATG00000045298) #11	CACNB4 (ENSCATG00000035449) #12	ARL5A (ENSCATG00000029667) #13	NEB (ENSCATG00000031600) #14	RIF1 (ENSCATG00000033353) #15	TNFAIP6 (ENSCATG00000043098) #16	NMI (ENSCATG00000045259) #17	ENSCATG00000038471	RBM43 (ENSCATG00000029617) #18	RND3 (ENSCATG00000042453) #20	ENSCATG00000036472 ##21	MMADHC (ENSCATG00000043511) #22	LYPD6 (ENSCATG00000030657) #25	LYPD6B (ENSCATG00000033638) #26	KIF5C (ENSCATG00000045100) #27	EPC2 (ENSCATG00000045291) #29	MBD5 (ENSCATG00000040834) #30	ORC4 (ENSCATG00000045066) #31	ACVR2A (ENSCATG00000033685) #32	ENSCATG00000039190 #33	ENSCATG00000012613	ENSCATG00000012956	ZEB2 (ENSCATG00000038567)	ENSCATG00000017157	GTDC1 (ENSCATG00000040626)	ENSCATG00000042700	ARHGAP15 (ENSCATG00000036437)
Drill	MODERN SPECIES	965			ARL6IP6 (ENSMLEG00000019180) #8	PRPF40A (ENSMLEG00000012078) #9	FMNL2 (ENSMLEG00000039912) #10	STAM2 (ENSMLEG00000038778) #11	CACNB4 (ENSMLEG00000032404) #12	ENSMLEG00000039596 #13	NEB (ENSMLEG00000025619) #14	RIF1 (ENSMLEG00000042945) #15	TNFAIP6 (ENSMLEG00000039791) #16	NMI (ENSMLEG00000033257) #17	ENSMLEG00000033169	RBM43 (ENSMLEG00000032155) #18	RND3 (ENSMLEG00000035844) #20	MMADHC (ENSMLEG00000033230) #22
Macaca	ANCESTRAL SPECIES	15	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.v #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00910000147393	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00940000153201.j.k.a.a.b.a.b ##21	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00390000010822.p	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT01020000230615	ENSGT00950000183208.A.c.a.e	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b
Macaca_a	ANCESTRAL SPECIES	17	ENSGT01100000263539.b.a.a.a.b.b.a.b.b.a.a.a.a.a.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.v #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00390000010822.p	ENSGT00940000158526 #29	ENSGT00940000167556.b.b.a.b.a.a.a.b.b.b.b.b.a.a.a.a.b.a.a.b.a.a.a	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00390000015224.c.a.a.a.k.e.a #35	ENSGT00950000183208.A.c.a.e	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b
Rhesus	MODERN SPECIES	3	ENSMMUG00000056430	ARL6IP6 (ENSMMUG00000062827) #8	PRPF40A (ENSMMUG00000010812) #9	FMNL2 (ENSMMUG00000031452) #10	STAM2 (ENSMMUG00000010527) #11	CACNB4 (ENSMMUG00000010526) #12	ARL5A (ENSMMUG00000010521) #13	RIF1 (ENSMMUG00000008611) #15	TNFAIP6 (ENSMMUG00000010927) #16	NMI (ENSMMUG00000017781) #17	RBM43 (ENSMMUG00000044949) #18	RND3 (ENSMMUG00000016040) #20	ENSMMUG00000056410	ENSMMUG00000058846 ##24	ENSMMUG00000051118 ##24	MMADHC (ENSMMUG00000005633) #22	LYPD6 (ENSMMUG00000038492) #25	ENSMMUG00000056996 ##24	LYPD6B (ENSMMUG00000009475) #26	KIF5C (ENSMMUG00000009268) #27	ENSMMUG00000031468	EPC2 (ENSMMUG00000023176) #29	ENSMMUG00000054591	ENSMMUG00000049941 ##24	MBD5 (ENSMMUG00000014921) #30	ORC4 (ENSMMUG00000000043) #31	ACVR2A (ENSMMUG00000000042) #32	ENSMMUG00000006925	ENSMMUG00000055627 #35	ENSMMUG00000052142	ENSMMUG00000065347 ##19
Crab-eating macaque	MODERN SPECIES	3	RPRM (ENSMFAG00000023756) #7	ARL6IP6 (ENSMFAG00000046021) #8	PRPF40A (ENSMFAG00000038480) #9	FMNL2 (ENSMFAG00000000995) #10	STAM2 (ENSMFAG00000039480) #11	CACNB4 (ENSMFAG00000044631) #12	ENSMFAG00000056377 #13	NEB (ENSMFAG00000000188) #14	RIF1 (ENSMFAG00000032233) #15	TNFAIP6 (ENSMFAG00000000925) #16	NMI (ENSMFAG00000045501) #17	RBM43 (ENSMFAG00000031648) #18	RND3 (ENSMFAG00000045221) #20	ENSMFAG00000037633 ##21	ENSMFAG00000060272	MMADHC (ENSMFAG00000001801) #22	LYPD6 (ENSMFAG00000002977) #25	LYPD6B (ENSMFAG00000046204) #26	KIF5C (ENSMFAG00000038774) #27	ENSMFAG00000052887	EPC2 (ENSMFAG00000002751) #29	ENSMFAG00000058250	MBD5 (ENSMFAG00000035493) #30	ORC4 (ENSMFAG00000031595) #31	ACVR2A (ENSMFAG00000003464) #32	ENSMFAG00000019961	ENSMFAG00000052786 #35	ZEB2 (ENSMFAG00000030381)	GTDC1 (ENSMFAG00000032520)	ARHGAP15 (ENSMFAG00000016740)	KYNU (ENSMFAG00000041160)
Pig-tailed macaque	DUPLICATION
Pig-tailed macaque	MODERN SPECIES	193	ARL6IP6 (ENSMNEG00000041131) #8	PRPF40A (ENSMNEG00000042025) #9	FMNL2 (ENSMNEG00000042052) #10	ENSMNEG00000031306	STAM2 (ENSMNEG00000026377) #11	CACNB4 (ENSMNEG00000032652) #12	ARL5A (ENSMNEG00000035230) #13	NEB (ENSMNEG00000037586) #14	RIF1 (ENSMNEG00000031616) #15	TNFAIP6 (ENSMNEG00000005810) #16	NMI (ENSMNEG00000036210) #17	ENSMNEG00000043989	RBM43 (ENSMNEG00000030900) #18	RND3 (ENSMNEG00000034976) #20	ENSMNEG00000033300 ##21	MMADHC (ENSMNEG00000036865) #22	LYPD6 (ENSMNEG00000014126) #25	LYPD6B (ENSMNEG00000036224) #26	KIF5C (ENSMNEG00000022981) #27	EPC2 (ENSMNEG00000039186) #29	MBD5 (ENSMNEG00000029374) #30	ORC4 (ENSMNEG00000031287) #31	ACVR2A (ENSMNEG00000043553) #32	ENSMNEG00000036514	ENSMNEG00000033956	ENSMNEG00000007339 #35
Pig-tailed macaque	MODERN SPECIES	485	PRR5L (ENSMNEG00000043138)	COMMD9 (ENSMNEG00000030213)	LDLRAD3 (ENSMNEG00000037863)	ENSMNEG00000045218	TRIM44 (ENSMNEG00000039165)	FJX1 (ENSMNEG00000021210)	PAMR1 (ENSMNEG00000038968)	SLC1A2 (ENSMNEG00000033227)	ENSMNEG00000027059	CD44 (ENSMNEG00000024975)	PDHX (ENSMNEG00000041540)	APIP (ENSMNEG00000037577)	EHF (ENSMNEG00000035998)	ELF5 (ENSMNEG00000036605)	CAT (ENSMNEG00000043629)	ENSMNEG00000043168 #22	ABTB2 (ENSMNEG00000011772)	NAT10 (ENSMNEG00000041284)	CAPRIN1 (ENSMNEG00000030485)	LMO2 (ENSMNEG00000031732)	FBXO3 (ENSMNEG00000045464)	C11orf91 (ENSMNEG00000033587)	KIAA1549L (ENSMNEG00000040724)	HIPK3 (ENSMNEG00000030400)	CSTF3 (ENSMNEG00000021807)	TCP11L1 (ENSMNEG00000034850)	DEPDC7 (ENSMNEG00000010538)	QSER1 (ENSMNEG00000038918)	PRRG4 (ENSMNEG00000035106)	CCDC73 (ENSMNEG00000037225)	EIF3M (ENSMNEG00000002856)
Vervet Monkey	MODERN SPECIES	1	GALNT13 (ENSCSAG00000015977)	RPRM (ENSCSAG00000018646) #7	ENSCSAG00000015984	ARL6IP6 (ENSCSAG00000015990) #8	PRPF40A (ENSCSAG00000016002) #9	ENSCSAG00000016011 #10	STAM2 (ENSCSAG00000016021) #11	CACNB4 (ENSCSAG00000016028) #12	NEB (ENSCSAG00000016065) #14	RIF1 (ENSCSAG00000016089) #15	TNFAIP6 (ENSCSAG00000016095) #16	NMI (ENSCSAG00000016102) #17	RBM43 (ENSCSAG00000016105) #18	RND3 (ENSCSAG00000016117) #20	ENSCSAG00000016123 ##21	MMADHC (ENSCSAG00000016144) #22	LYPD6 (ENSCSAG00000016149) #25	LYPD6B (ENSCSAG00000016151) #26	KIF5C (ENSCSAG00000016159) #27	ENSCSAG00000018645	EPC2 (ENSCSAG00000016167) #29	MBD5 (ENSCSAG00000016175) #30	ORC4 (ENSCSAG00000016183) #31	ACVR2A (ENSCSAG00000016192) #32	ZEB2 (ENSCSAG00000016197)	GTDC1 (ENSCSAG00000016202)	ARHGAP15 (ENSCSAG00000016210)	KYNU (ENSCSAG00000016218)	LRP1B (ENSCSAG00000016246)	NXPH2 (ENSCSAG00000016269)	SPOPL (ENSCSAG00000016280)
Rhinopithecus	DUPLICATION
Rhinopithecus	DUPLICATION
Rhinopithecus	ANCESTRAL SPECIES																	ENSGT00390000015050.o.a #22
Golden snub-nosed monkey	MODERN SPECIES	3091																ENSRROG00000039512 #22	ENSRROG00000042793	PPM1B (ENSRROG00000045182)	SLC3A1 (ENSRROG00000028579)	PREPL (ENSRROG00000041940)	CAMKMT (ENSRROG00000030830)	SIX3 (ENSRROG00000042657)	SIX2 (ENSRROG00000043241)
Black snub-nosed monkey	MODERN SPECIES	2342						ZFP36L2 (ENSRBIG00000026428)	ENSRBIG00000035265	THADA (ENSRBIG00000028134)	PLEKHH2 (ENSRBIG00000035745)	C1GALT1C1L (ENSRBIG00000006561)	ENSRBIG00000041164	DYNC2LI1 (ENSRBIG00000031972)	ABCG5 (ENSRBIG00000039579)	ABCG8 (ENSRBIG00000024223)	LRPPRC (ENSRBIG00000031552)	ENSRBIG00000036556 #22	PPM1B (ENSRBIG00000037090)	SLC3A1 (ENSRBIG00000032035)	PREPL (ENSRBIG00000030291)	CAMKMT (ENSRBIG00000031044)	SIX3 (ENSRBIG00000031093)	SIX2 (ENSRBIG00000041429)	SRBD1 (ENSRBIG00000033486)	PRKCE (ENSRBIG00000043807)	EPAS1 (ENSRBIG00000032880)	TMEM247 (ENSRBIG00000044940)	ATP6V1E2 (ENSRBIG00000004827)	RHOQ (ENSRBIG00000026914)	PIGF (ENSRBIG00000037873)	ENSRBIG00000012594	ENSRBIG00000032105
Rhinopithecus	ANCESTRAL SPECIES																	ENSGT00390000015050.o.b #22
Golden snub-nosed monkey	MODERN SPECIES	3307																ENSRROG00000024842 #22	LYPD6 (ENSRROG00000032608) #25
Rhinopithecus	ANCESTRAL SPECIES	577														ENSGT00940000157541 #20	ENSGT00940000153201.j.k.b #21	ENSGT00390000015050.p #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30
Black snub-nosed monkey	MODERN SPECIES	619														RND3 (ENSRBIG00000029144) #20	ENSRBIG00000034465 #21	ENSRBIG00000014354 #22	LYPD6 (ENSRBIG00000034039) #25	LYPD6B (ENSRBIG00000039136) #26	KIF5C (ENSRBIG00000037636) #27	EPC2 (ENSRBIG00000030738) #29
Hominoidea	ANCESTRAL SPECIES	15	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00620000089259	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.v #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00910000147393	ENSGT00530000063686.a.b #18	ENSGT00940000154530.r.b.b	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00910000146654 #28	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a.e	ENSGT00900000143214	ENSGT00910000147897	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b
Hominidae	ANCESTRAL SPECIES	17	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00620000089259	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.v #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00910000147393	ENSGT00530000063686.a.b #18	ENSGT00940000154530.r.b.b	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00910000146654 #28	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a.e	ENSGT00910000147897	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	14	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00620000089259	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.v.f #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00910000147393	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a.e	ENSGT00910000147897	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953
Gorilla	MODERN SPECIES	15	GALNT13 (ENSGGOG00000034959)	RPRM (ENSGGOG00000002162) #7	ARL6IP6 (ENSGGOG00000015604) #8	PRPF40A (ENSGGOG00000015592) #9	ENSGGOG00000028462	FMNL2 (ENSGGOG00000008600) #10	STAM2 (ENSGGOG00000011441) #11	CACNB4 (ENSGGOG00000038672) #12	ENSGGOG00000002066 #13	NEB (ENSGGOG00000016489) #14	RIF1 (ENSGGOG00000040178) #15	TNFAIP6 (ENSGGOG00000022498) #16	NMI (ENSGGOG00000013518) #17	RBM43 (ENSGGOG00000041294) #18	RND3 (ENSGGOG00000036127) #20	MMADHC (ENSGGOG00000027348) #22	LYPD6 (ENSGGOG00000007400) #25	LYPD6B (ENSGGOG00000000801) #26	KIF5C (ENSGGOG00000016596) #27	EPC2 (ENSGGOG00000011299) #29	MBD5 (ENSGGOG00000003833) #30	ORC4 (ENSGGOG00000022258) #31	ACVR2A (ENSGGOG00000015713) #32	ZEB2 (ENSGGOG00000003186)	ENSGGOG00000039783	GTDC1 (ENSGGOG00000015776)	ARHGAP15 (ENSGGOG00000034982)	KYNU (ENSGGOG00000007406)	LRP1B (ENSGGOG00000040868)	ENSGGOG00000026916	NXPH2 (ENSGGOG00000008363)
Homo/Pan group	ANCESTRAL SPECIES	13	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00620000089259	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.v.f #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00910000147393	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a.e	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862
Pan	ANCESTRAL SPECIES	12	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00620000089259	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.v.f #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00910000147393	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00960000190927	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a.e	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00390000007384.c.b	ENSGT00940000157521.b	ENSGT00910000147617
Chimpanzee	MODERN SPECIES	15	RPRM (ENSPTRG00000012545) #7	ARL6IP6 (ENSPTRG00000012544) #8	PRPF40A (ENSPTRG00000012543) #9	ENSPTRG00000048776	FMNL2 (ENSPTRG00000012541) #10	STAM2 (ENSPTRG00000012540) #11	CACNB4 (ENSPTRG00000047916) #12	ARL5A (ENSPTRG00000012538) #13	ENSPTRG00000039444	NEB (ENSPTRG00000012536) #14	RIF1 (ENSPTRG00000012534) #15	TNFAIP6 (ENSPTRG00000012533) #16	NMI (ENSPTRG00000012531) #17	RBM43 (ENSPTRG00000046668) #18	RND3 (ENSPTRG00000012527) #20	MMADHC (ENSPTRG00000012525) #22	LYPD6 (ENSPTRG00000012524) #25	LYPD6B (ENSPTRG00000012523) #26	KIF5C (ENSPTRG00000012521) #27	ENSPTRG00000051205	EPC2 (ENSPTRG00000012518) #29	MBD5 (ENSPTRG00000029184) #30	ORC4 (ENSPTRG00000012515) #31	ACVR2A (ENSPTRG00000012514) #32	ZEB2 (ENSPTRG00000012513)	GTDC1 (ENSPTRG00000012511)	ARHGAP15 (ENSPTRG00000012510)	KYNU (ENSPTRG00000012509)	ENSPTRG00000048004	LRP1B (ENSPTRG00000012508)	ENSPTRG00000042896
Bonobo	MODERN SPECIES	15	RPRM (ENSPPAG00000002667) #7	ARL6IP6 (ENSPPAG00000026309) #8	PRPF40A (ENSPPAG00000040033) #9	ENSPPAG00000009946	FMNL2 (ENSPPAG00000038903) #10	STAM2 (ENSPPAG00000037568) #11	CACNB4 (ENSPPAG00000028311) #12	ARL5A (ENSPPAG00000033494) #13	ENSPPAG00000043206 #14	RIF1 (ENSPPAG00000023754) #15	TNFAIP6 (ENSPPAG00000029874) #16	NMI (ENSPPAG00000034174) #17	ENSPPAG00000028605	RBM43 (ENSPPAG00000035042) #18	RND3 (ENSPPAG00000042575) #20	MMADHC (ENSPPAG00000029746) #22	LYPD6 (ENSPPAG00000043249) #25	LYPD6B (ENSPPAG00000039900) #26	KIF5C (ENSPPAG00000031052) #27	ENSPPAG00000001157	EPC2 (ENSPPAG00000040114) #29	MBD5 (ENSPPAG00000037170) #30	ORC4 (ENSPPAG00000043794) #31	ACVR2A (ENSPPAG00000043981) #32	ZEB2 (ENSPPAG00000025839)	GTDC1 (ENSPPAG00000033824)	ARHGAP15 (ENSPPAG00000031056)	KYNU (ENSPPAG00000008434)	ENSPPAG00000039032	LRP1B (ENSPPAG00000003706)	ENSPPAG00000041987
Human	MODERN SPECIES	11	KCNJ3 (ENSG00000162989)	GALNT13 (ENSG00000144278)	RPRM (ENSG00000177519) #7	ARL6IP6 (ENSG00000177917) #8	PRPF40A (ENSG00000196504) #9	FMNL2 (ENSG00000157827) #10	STAM2 (ENSG00000115145) #11	CACNB4 (ENSG00000182389) #12	ARL5A (ENSG00000162980) #13	NEB (ENSG00000183091) #14	RIF1 (ENSG00000080345) #15	TNFAIP6 (ENSG00000123610) #16	NMI (ENSG00000123609) #17	RBM43 (ENSG00000184898) #18	RND3 (ENSG00000115963) #20	MMADHC (ENSG00000168288) #22	LYPD6 (ENSG00000187123) #25	LYPD6B (ENSG00000150556) #26	KIF5C (ENSG00000168280) #27	EPC2 (ENSG00000135999) #29	MBD5 (ENSG00000204406) #30	ORC4 (ENSG00000115947) #31	ACVR2A (ENSG00000121989) #32	ZEB2 (ENSG00000169554)	GTDC1 (ENSG00000121964)	ARHGAP15 (ENSG00000075884)	KYNU (ENSG00000115919)	LRP1B (ENSG00000168702)	NXPH2 (ENSG00000144227)	SPOPL (ENSG00000144228)	HNMT (ENSG00000150540)
Orangutan	MODERN SPECIES	15	ARL6IP6 (ENSPPYG00000012855) #8	PRPF40A (ENSPPYG00000012854) #9	ENSPPYG00000012852	FMNL2 (ENSPPYG00000012851) #10	STAM2 (ENSPPYG00000012850) #11	CACNB4 (ENSPPYG00000012849) #12	ARL5A (ENSPPYG00000012848) #13	ENSPPYG00000032033	NEB (ENSPPYG00000012847) #14	RIF1 (ENSPPYG00000012846) #15	TNFAIP6 (ENSPPYG00000012845) #16	ENSPPYG00000012844 #17	RBM43 (ENSPPYG00000037248) #18	ENSPPYG00000036365	RND3 (ENSPPYG00000012842) #20	MMADHC (ENSPPYG00000012840) #22	LYPD6 (ENSPPYG00000012839) #25	ENSPPYG00000029593 #26	KIF5C (ENSPPYG00000012838) #27	ENSPPYG00000032644 #28	EPC2 (ENSPPYG00000012837) #29	ENSPPYG00000036116 ##23	MBD5 (ENSPPYG00000012836) #30	ORC4 (ENSPPYG00000012835) #31	ACVR2A (ENSPPYG00000012834) #32	ZEB2 (ENSPPYG00000012831)	ENSPPYG00000031095	GTDC1 (ENSPPYG00000034543)	ARHGAP15 (ENSPPYG00000012828)	KYNU (ENSPPYG00000012827)	LRP1B (ENSPPYG00000012826)
Gibbon	DUPLICATION
Gibbon	MODERN SPECIES	7	PRPF40A (ENSNLEG00000011324) #9	FMNL2 (ENSNLEG00000026694) #10	ENSNLEG00000019196	ENSNLEG00000029701	STAM2 (ENSNLEG00000011293) #11	CACNB4 (ENSNLEG00000029444) #12	ENSNLEG00000030371	ARL5A (ENSNLEG00000011191) #13	NEB (ENSNLEG00000011170) #14	RIF1 (ENSNLEG00000010955) #15	TNFAIP6 (ENSNLEG00000010934) #16	NMI (ENSNLEG00000010893) #17	RBM43 (ENSNLEG00000010889) #18	RND3 (ENSNLEG00000010846) #20	ENSNLEG00000035632	MMADHC (ENSNLEG00000010795) #22	IQCE (ENSNLEG00000010709)	BRAT1 (ENSNLEG00000010655)	AMZ1 (ENSNLEG00000010620)	GNA12 (ENSNLEG00000033618)	CARD11 (ENSNLEG00000010543)	ENSNLEG00000015435	ENSNLEG00000015459	AP5Z1 (ENSNLEG00000015462)	RADIL (ENSNLEG00000015475)	MMD2 (ENSNLEG00000015480)	ENSNLEG00000036049	RBAK (ENSNLEG00000030817)	WIPI2 (ENSNLEG00000015492)	ENSNLEG00000027537	ENSNLEG00000031210
Gibbon	MODERN SPECIES	5	COMMD9 (ENSNLEG00000017943)	LDLRAD3 (ENSNLEG00000017940)	ENSNLEG00000033071	ENSNLEG00000034033	TRIM44 (ENSNLEG00000017939)	FJX1 (ENSNLEG00000018184)	PAMR1 (ENSNLEG00000017937)	SLC1A2 (ENSNLEG00000032279)	ENSNLEG00000031295	CD44 (ENSNLEG00000017932)	PDHX (ENSNLEG00000017930)	APIP (ENSNLEG00000028265)	EHF (ENSNLEG00000017927)	ELF5 (ENSNLEG00000017925)	CAT (ENSNLEG00000017922)	ENSNLEG00000027640 #22	ENSNLEG00000017921	NAT10 (ENSNLEG00000017916)	CAPRIN1 (ENSNLEG00000017913)	LMO2 (ENSNLEG00000028429)	ENSNLEG00000018183	FBXO3 (ENSNLEG00000017908)	ENSNLEG00000027673	KIAA1549L (ENSNLEG00000026545)	HIPK3 (ENSNLEG00000017906)	CSTF3 (ENSNLEG00000017901)	ENSNLEG00000030363	TCP11L1 (ENSNLEG00000017899)	ENSNLEG00000017897	QSER1 (ENSNLEG00000017896)	PRRG4 (ENSNLEG00000028029)
Platyrrhini	ANCESTRAL SPECIES	9	ENSGT00950000183077.a.a.a.a.b	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00620000089259	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.v #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000154530.r.b.b	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00390000002748.j	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b
Mas night monkey	MODERN SPECIES	1325	ARL6IP6 (ENSANAG00000034126) #8	PRPF40A (ENSANAG00000023828) #9	FMNL2 (ENSANAG00000029876) #10	ENSANAG00000024796	ENSANAG00000026006	STAM2 (ENSANAG00000000022) #11	CACNB4 (ENSANAG00000035973) #12	ARL5A (ENSANAG00000027698) #13	NEB (ENSANAG00000025115) #14	RIF1 (ENSANAG00000024840) #15	TNFAIP6 (ENSANAG00000024087) #16	NMI (ENSANAG00000034417) #17	RBM43 (ENSANAG00000032206) #18	ENSANAG00000022645	RND3 (ENSANAG00000033420) #20	MMADHC (ENSANAG00000038372) #22	LYPD6 (ENSANAG00000032366) #25	LYPD6B (ENSANAG00000034708) #26	KIF5C (ENSANAG00000034068) #27	ENSANAG00000027793	EPC2 (ENSANAG00000037383) #29	MBD5 (ENSANAG00000033779) #30	ORC4 (ENSANAG00000023030) #31	ACVR2A (ENSANAG00000030181) #32
Cebidae	ANCESTRAL SPECIES	11	ENSGT00390000010523.c.b #7	ENSGT00950000183077.a.a.a.a.b	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00620000089259	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.v #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00390000002748.j	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b
Marmoset	DUPLICATION
Marmoset	MODERN SPECIES	78	ENSCJAG00000048365	RAB40AL (ENSCJAG00000059712)	NXF3 (ENSCJAG00000003435)	ENSCJAG00000039760	ENSCJAG00000062271	TCEAL8 (ENSCJAG00000036572)	TCEAL5 (ENSCJAG00000046955)	ENSCJAG00000003425	RAB40A (ENSCJAG00000057721)	TCEAL4 (ENSCJAG00000075471)	ENSCJAG00000003405	ENSCJAG00000003374	TMEM31 (ENSCJAG00000003393)	PLP1 (ENSCJAG00000003349)	RAB9B (ENSCJAG00000003347)	ENSCJAG00000038643 #22	ENSCJAG00000042281	ENSCJAG00000082114	ENSCJAG00000070962	ENSCJAG00000085484	H2BW1 (ENSCJAG00000033818)	ENSCJAG00000071684	SLC25A53 (ENSCJAG00000085438)	ZCCHC18 (ENSCJAG00000008252)	FAM199X (ENSCJAG00000008241)	ENSCJAG00000008237	IL1RAPL2 (ENSCJAG00000008213)	TEX13A (ENSCJAG00000081533)	NRK (ENSCJAG00000008160)	RADX (ENSCJAG00000008118)	RNF128 (ENSCJAG00000008099)
Marmoset	MODERN SPECIES	18	STAM2 (ENSCJAG00000044417) #11	CACNB4 (ENSCJAG00000003326) #12	ENSCJAG00000040846 #13	ENSCJAG00000086283	ENSCJAG00000075900 ##24	NEB (ENSCJAG00000003175) #14	RIF1 (ENSCJAG00000003138) #15	TNFAIP6 (ENSCJAG00000003134) #16	NMI (ENSCJAG00000003127) #17	RBM43 (ENSCJAG00000003125) #18	ENSCJAG00000083510 ##24	RND3 (ENSCJAG00000045984) #20	ENSCJAG00000071388	ENSCJAG00000075779	ENSCJAG00000070079 ##24	ENSCJAG00000003086 #22	LYPD6 (ENSCJAG00000055489) #25	LYPD6B (ENSCJAG00000003077) #26	KIF5C (ENSCJAG00000003053) #27	ENSCJAG00000076357	EPC2 (ENSCJAG00000012637) #29	MBD5 (ENSCJAG00000012594) #30	ORC4 (ENSCJAG00000012561) #31	ACVR2A (ENSCJAG00000012496) #32	ENSCJAG00000065177 ##19	ZEB2 (ENSCJAG00000012457)	ENSCJAG00000070871	GTDC1 (ENSCJAG00000012421)	ENSCJAG00000079909 ##23	ARHGAP15 (ENSCJAG00000012381)	KYNU (ENSCJAG00000012322)
Cebidae_a	ANCESTRAL SPECIES	27	ENSGT00390000010523.c.b #7	ENSGT00950000183077.a.a.a.a.b	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00620000089259	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.v #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00390000002748.j	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b
Capuchin	DUPLICATION
Capuchin	MODERN SPECIES	27	ENSCCAG00000019893	ARL6IP6 (ENSCCAG00000024457) #8	PRPF40A (ENSCCAG00000034856) #9	FMNL2 (ENSCCAG00000028051) #10	ENSCCAG00000020790	ENSCCAG00000007786	STAM2 (ENSCCAG00000030900) #11	CACNB4 (ENSCCAG00000036673) #12	ARL5A (ENSCCAG00000023321) #13	NEB (ENSCCAG00000026566) #14	RIF1 (ENSCCAG00000024760) #15	TNFAIP6 (ENSCCAG00000022288) #16	NMI (ENSCCAG00000022500) #17	RBM43 (ENSCCAG00000020911) #18	RND3 (ENSCCAG00000030386) #20	MMADHC (ENSCCAG00000036477) #22	LYPD6 (ENSCCAG00000028399) #25	LYPD6B (ENSCCAG00000030062) #26	KIF5C (ENSCCAG00000031241) #27	EPC2 (ENSCCAG00000037425) #29	MBD5 (ENSCCAG00000030324) #30	ORC4 (ENSCCAG00000008932) #31	ACVR2A (ENSCCAG00000034862) #32	ENSCCAG00000019840	ZEB2 (ENSCCAG00000036823)	GTDC1 (ENSCCAG00000001331)	ARHGAP15 (ENSCCAG00000034364)	KYNU (ENSCCAG00000028624)	LRP1B (ENSCCAG00000026411)	ENSCCAG00000028899	ENSCCAG00000030027
Capuchin	MODERN SPECIES	324				SALL3 (ENSCCAG00000034863)	ATP9B (ENSCCAG00000019163)	NFATC1 (ENSCCAG00000027097)	CTDP1 (ENSCCAG00000022629)	ENSCCAG00000018820	KCNG2 (ENSCCAG00000023074)	SLC66A2 (ENSCCAG00000034335)	HSBP1L1 (ENSCCAG00000023553)	ENSCCAG00000021200	RBFA (ENSCCAG00000025293)	ADNP2 (ENSCCAG00000037993)	PARD6G (ENSCCAG00000028220)	ENSCCAG00000030742 #22
Bolivian squirrel monkey	DUPLICATION
Bolivian squirrel monkey	MODERN SPECIES	44	PHF14 (ENSSBOG00000033689)	ENSSBOG00000027959	THSD7A (ENSSBOG00000022829)	ARID1A (ENSSBOG00000021791)	PIGV (ENSSBOG00000031404)	ZDHHC18 (ENSSBOG00000027289)	SFN (ENSSBOG00000010021)	ENSSBOG00000021731	GPN2 (ENSSBOG00000031587)	GPATCH3 (ENSSBOG00000019680)	NR0B2 (ENSSBOG00000026068)	NUDC (ENSSBOG00000035376)	KDF1 (ENSSBOG00000022048)	TENT5B (ENSSBOG00000023376)	SLC9A1 (ENSSBOG00000034296)	ENSSBOG00000026222 #22	WDTC1 (ENSSBOG00000024363)	TMEM222 (ENSSBOG00000031879)	SYTL1 (ENSSBOG00000022361)	MAP3K6 (ENSSBOG00000022232)	FCN3 (ENSSBOG00000035705)	CD164L2 (ENSSBOG00000016074)	GPR3 (ENSSBOG00000015463)	WASF2 (ENSSBOG00000022556)	ENSSBOG00000002550	AHDC1 (ENSSBOG00000026685)	FGR (ENSSBOG00000033596)	IFI6 (ENSSBOG00000034960)	FAM76A (ENSSBOG00000026158)	STX12 (ENSSBOG00000014436)	PPP1R8 (ENSSBOG00000032910)
Bolivian squirrel monkey	MODERN SPECIES	46	RPRM (ENSSBOG00000009917) #7	ARL6IP6 (ENSSBOG00000029584) #8	PRPF40A (ENSSBOG00000015435) #9	FMNL2 (ENSSBOG00000027176) #10	ENSSBOG00000023807	ENSSBOG00000027242 #11	ENSSBOG00000023639	CACNB4 (ENSSBOG00000025206) #12	ARL5A (ENSSBOG00000034323) #13	NEB (ENSSBOG00000031622) #14	RIF1 (ENSSBOG00000029530) #15	TNFAIP6 (ENSSBOG00000034644) #16	NMI (ENSSBOG00000035067) #17	RBM43 (ENSSBOG00000022371) #18	RND3 (ENSSBOG00000025108) #20	ENSSBOG00000035889 #22	LYPD6 (ENSSBOG00000019011) #25	LYPD6B (ENSSBOG00000017701) #26	KIF5C (ENSSBOG00000013675) #27	EPC2 (ENSSBOG00000035940) #29	MBD5 (ENSSBOG00000024663) #30	ORC4 (ENSSBOG00000028104) #31	ACVR2A (ENSSBOG00000025103) #32	ENSSBOG00000018747	ZEB2 (ENSSBOG00000026124)	ENSSBOG00000025406	GTDC1 (ENSSBOG00000030737)	ENSSBOG00000023369	ARHGAP15 (ENSSBOG00000027845)	KYNU (ENSSBOG00000029002)	ENSSBOG00000021516
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	5244																MMADHC (ENSTSYG00000009075) #22	LYPD6 (ENSTSYG00000033724) #25
Tarsier	MODERN SPECIES	6574		MMGT1 (ENSTSYG00000000021)	SLC9A6 (ENSTSYG00000010724)	ENSTSYG00000030938	FHL1 (ENSTSYG00000000860)	MAP7D3 (ENSTSYG00000011953)	ADGRG4 (ENSTSYG00000036196)	ENSTSYG00000033716	BRS3 (ENSTSYG00000003032)	HTATSF1 (ENSTSYG00000028876)	VGLL1 (ENSTSYG00000005070)	TNLG8B (ENSTSYG00000010623)	ARHGEF6 (ENSTSYG00000013105)	RBMX (ENSTSYG00000009555)	ENSTSYG00000034869	ENSTSYG00000026206 #22
Strepsirrhini	ANCESTRAL SPECIES	10	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953
Lemuriformes	ANCESTRAL SPECIES	5	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953
Mouse lemur	MODERN SPECIES	30	GALNT13 (ENSMICG00000013917)	RPRM (ENSMICG00000038767) #7	ARL6IP6 (ENSMICG00000042407) #8	PRPF40A (ENSMICG00000017146) #9	FMNL2 (ENSMICG00000017132) #10	STAM2 (ENSMICG00000009382) #11	CACNB4 (ENSMICG00000005867) #12	ENSMICG00000015788 #13	NEB (ENSMICG00000007063) #14	RIF1 (ENSMICG00000046127) #15	TNFAIP6 (ENSMICG00000045439) #16	NMI (ENSMICG00000046560) #17	RBM43 (ENSMICG00000002078) #18	ENSMICG00000033304	RND3 (ENSMICG00000035694) #20	MMADHC (ENSMICG00000005952) #22	LYPD6 (ENSMICG00000041550) #25	LYPD6B (ENSMICG00000016688) #26	KIF5C (ENSMICG00000016670) #27	EPC2 (ENSMICG00000016659) #29	MBD5 (ENSMICG00000017046) #30	ORC4 (ENSMICG00000004578) #31	ACVR2A (ENSMICG00000004565) #32	ZEB2 (ENSMICG00000017462)	GTDC1 (ENSMICG00000007473)	ARHGAP15 (ENSMICG00000043939)	SCN3A (ENSMICG00000001132)	ENSMICG00000002843	CSRNP3 (ENSMICG00000015267)	GALNT3 (ENSMICG00000015295)	TTC21B (ENSMICG00000015487)
Lemuriformes_a	ANCESTRAL SPECIES	81	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00620000089259	ENSGT00390000008673.c.b	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32
Coquerels sifaka	DUPLICATION
Coquerels sifaka	DUPLICATION
Coquerels sifaka	MODERN SPECIES	116	RPRM (ENSPCOG00000011465) #7	ARL6IP6 (ENSPCOG00000026472) #8	PRPF40A (ENSPCOG00000021456) #9	FMNL2 (ENSPCOG00000028832) #10	ENSPCOG00000017905	STAM2 (ENSPCOG00000015690) #11	CACNB4 (ENSPCOG00000024069) #12	ARL5A (ENSPCOG00000016563) #13	NEB (ENSPCOG00000014125) #14	RIF1 (ENSPCOG00000027888) #15	TNFAIP6 (ENSPCOG00000017912) #16	NMI (ENSPCOG00000028467) #17	RBM43 (ENSPCOG00000024727) #18	RND3 (ENSPCOG00000025763) #20	ENSPCOG00000028209	ENSPCOG00000015253 #22	LYPD6 (ENSPCOG00000024054) #25	LYPD6B (ENSPCOG00000024216) #26	KIF5C (ENSPCOG00000024550) #27	EPC2 (ENSPCOG00000016814) #29	MBD5 (ENSPCOG00000007503) #30	ORC4 (ENSPCOG00000005005) #31	ACVR2A (ENSPCOG00000016732) #32
Coquerels sifaka	MODERN SPECIES	83	PON3 (ENSPCOG00000026838)	PON2 (ENSPCOG00000023699)	ASB4 (ENSPCOG00000024006)	PDK4 (ENSPCOG00000015783)	DYNC1I1 (ENSPCOG00000018842)	SLC25A13 (ENSPCOG00000021703)	ENSPCOG00000025433	ENSPCOG00000018050	ENSPCOG00000022335	DLX6 (ENSPCOG00000018676)	DLX5 (ENSPCOG00000024882)	ENSPCOG00000016090	TAC1 (ENSPCOG00000021374)	ENSPCOG00000025256	C1GALT1 (ENSPCOG00000015839)	ENSPCOG00000018949 #22	COL28A1 (ENSPCOG00000022435)	MIOS (ENSPCOG00000011418)	RPA3 (ENSPCOG00000022659)	UMAD1 (ENSPCOG00000016044)	GLCCI1 (ENSPCOG00000008498)	ICA1 (ENSPCOG00000003590)	NXPH1 (ENSPCOG00000018464)	ENSPCOG00000018675
Coquerels sifaka	MODERN SPECIES	760	C11orf71 (ENSPCOG00000015231)	NNMT (ENSPCOG00000027693)	ZBTB16 (ENSPCOG00000004404)	HTR3A (ENSPCOG00000025438)	HTR3B (ENSPCOG00000013139)	ENSPCOG00000019270	USP28 (ENSPCOG00000018279)	ZW10 (ENSPCOG00000020599)	TMPRSS5 (ENSPCOG00000006628)	DRD2 (ENSPCOG00000007514)	TTC12 (ENSPCOG00000024368)	NCAM1 (ENSPCOG00000022925)	PTS (ENSPCOG00000024186)	BCO2 (ENSPCOG00000020109)	TEX12 (ENSPCOG00000023524)	ENSPCOG00000028355 #22	ENSPCOG00000024440	SDHD (ENSPCOG00000019028)	TIMM8B (ENSPCOG00000026969)	NKAPD1 (ENSPCOG00000003388)	PIH1D2 (ENSPCOG00000024160)	DLAT (ENSPCOG00000014290)	DIXDC1 (ENSPCOG00000014302)	C11orf52 (ENSPCOG00000016017)	HSPB2 (ENSPCOG00000023616)	CRYAB (ENSPCOG00000015670)	CFAP68 (ENSPCOG00000021613)	FDXACB1 (ENSPCOG00000027443)	ALG9 (ENSPCOG00000013221)	PPP2R1B (ENSPCOG00000022343)	SIK2 (ENSPCOG00000010314)
Greater bamboo lemur	MODERN SPECIES	1172														ENSPSMG00000005495	ENSPSMG00000005498	MMADHC (ENSPSMG00000005529) #22	LYPD6 (ENSPSMG00000005551) #25	LYPD6B (ENSPSMG00000005573) #26	KIF5C (ENSPSMG00000005639) #27	EPC2 (ENSPSMG00000005654) #29	MBD5 (ENSPSMG00000005699) #30	ENSPSMG00000005764	ORC4 (ENSPSMG00000005784) #31	ACVR2A (ENSPSMG00000005815) #32
Bushbaby	MODERN SPECIES	179							STAM2 (ENSOGAG00000016811) #11	CACNB4 (ENSOGAG00000011426) #12	ARL5A (ENSOGAG00000011424) #13	NEB (ENSOGAG00000006154) #14	RIF1 (ENSOGAG00000006141) #15	TNFAIP6 (ENSOGAG00000011099) #16	NMI (ENSOGAG00000002762) #17	RBM43 (ENSOGAG00000002761) #18	RND3 (ENSOGAG00000006980) #20	MMADHC (ENSOGAG00000034385) #22	LYPD6 (ENSOGAG00000009025) #25	LYPD6B (ENSOGAG00000009022) #26	KIF5C (ENSOGAG00000009021) #27	ENSOGAG00000027538	EPC2 (ENSOGAG00000009018) #29	MBD5 (ENSOGAG00000005182) #30	ENSOGAG00000007606	ORC4 (ENSOGAG00000004022) #31	ACVR2A (ENSOGAG00000004021) #32	ENSOGAG00000025795	ZEB2 (ENSOGAG00000010020)	GTDC1 (ENSOGAG00000001984)	ARHGAP15 (ENSOGAG00000001981)	KYNU (ENSOGAG00000001979)	ENSOGAG00000033357
Euarchontoglires_A	ANCESTRAL SPECIES	13	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00950000185140	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555
Tree shrew	MODERN SPECIES	3558																ENSTBEG00000010789 #22
Glires	ANCESTRAL SPECIES	14	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00950000185140	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555
Rodentia	ANCESTRAL SPECIES	14	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555
Rodentia_B	ANCESTRAL SPECIES	12	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555
Myomorpha	ANCESTRAL SPECIES	10	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555
Muroidea	ANCESTRAL SPECIES	34	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT01100000263477.B.d.a.b	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT01100000263477.B.d.a.b	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555
Murinae	ANCESTRAL SPECIES	1	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT01100000263477.B.d.a.b	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00550000074961	ENSGT00390000009566	ENSGT00940000153772.B
Mus	ANCESTRAL SPECIES	1	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT01100000263477.B.d.a.b	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00550000074961	ENSGT00390000009566	ENSGT00940000153772.B
Mus_A	ANCESTRAL SPECIES		ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT01100000263477.B.d.a.b	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00550000074961	ENSGT00390000009566	ENSGT00940000153772.B
Mus_B	ANCESTRAL SPECIES	1	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT01100000263477.B.d.a.b	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00550000074961	ENSGT00390000009566	ENSGT00940000153772.B
Mus_C	ANCESTRAL SPECIES		ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT01100000263477.B.d.a.b	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00390000012037.x	ENSGT00550000074961	ENSGT00390000009566
spretus	MODERN SPECIES	11	Galnt13 (MGP_SPRETEiJ_G0024485)	Rprm (MGP_SPRETEiJ_G0024484) #7	Arl6ip6 (MGP_SPRETEiJ_G0024483) #8	Prpf40a (MGP_SPRETEiJ_G0024482) #9	Fmnl2 (MGP_SPRETEiJ_G0024481) #10	Stam2 (MGP_SPRETEiJ_G0024480) #11	Cacnb4 (MGP_SPRETEiJ_G0024479) #12	Arl5a (MGP_SPRETEiJ_G0024478) #13	Neb (MGP_SPRETEiJ_G0024477) #14	Rif1 (MGP_SPRETEiJ_G0024476) #15	Tnfaip6 (MGP_SPRETEiJ_G0024475) #16	Nmi (MGP_SPRETEiJ_G0024474) #17	Rbm43 (MGP_SPRETEiJ_G0024473) #18	Tas2r134 (MGP_SPRETEiJ_G0024472)	Rnd3 (MGP_SPRETEiJ_G0024471) #20	Mmadhc (MGP_SPRETEiJ_G0024470) #22	Lypd6 (MGP_SPRETEiJ_G0024469) #25	Lypd6b (MGP_SPRETEiJ_G0024468) #26	Kif5c (MGP_SPRETEiJ_G0024467) #27	Epc2 (MGP_SPRETEiJ_G0024466) #29	MGP_SPRETEiJ_G0024465	Mbd5 (MGP_SPRETEiJ_G0024464) #30	Orc4 (MGP_SPRETEiJ_G0024463) #31	Acvr2a (MGP_SPRETEiJ_G0024462) #32	Zeb2 (MGP_SPRETEiJ_G0024461)	Gtdc1 (MGP_SPRETEiJ_G0024460)	Arhgap15 (MGP_SPRETEiJ_G0024459)	Kynu (MGP_SPRETEiJ_G0024458)	Lrp1b (MGP_SPRETEiJ_G0024457)	MGP_SPRETEiJ_G0024456	Ppp6c (MGP_SPRETEiJ_G0024455)
Steppe mouse	MODERN SPECIES	2583															ENSMSIG00000020673	Mmadhc (ENSMSIG00000020649) #22	Lypd6 (ENSMSIG00000020546) #25	Lypd6b (ENSMSIG00000020508) #26
Mouse	MODERN SPECIES	11	Galnt13 (ENSMUSG00000060988)	Rprm (ENSMUSG00000075334) #7	Arl6ip6 (ENSMUSG00000026960) #8	Prpf40a (ENSMUSG00000061136) #9	Fmnl2 (ENSMUSG00000036053) #10	Stam2 (ENSMUSG00000055371) #11	Cacnb4 (ENSMUSG00000017412) #12	Arl5a (ENSMUSG00000036093) #13	Neb (ENSMUSG00000026950) #14	Rif1 (ENSMUSG00000036202) #15	Tnfaip6 (ENSMUSG00000053475) #16	Nmi (ENSMUSG00000026946) #17	Rbm43 (ENSMUSG00000036249) #18	Tas2r134 (ENSMUSG00000056115)	Rnd3 (ENSMUSG00000017144) #20	Mmadhc (ENSMUSG00000026766) #22	Lypd6 (ENSMUSG00000050447) #25	Lypd6b (ENSMUSG00000026765) #26	Kif5c (ENSMUSG00000026764) #27	Epc2 (ENSMUSG00000069495) #29	Mbd5 (ENSMUSG00000036792) #30	Orc4 (ENSMUSG00000026761) #31	Acvr2a (ENSMUSG00000052155) #32	Zeb2 (ENSMUSG00000026872)	Gtdc1 (ENSMUSG00000036890)	Arhgap15 (ENSMUSG00000049744)	Kynu (ENSMUSG00000026866)	Lrp1b (ENSMUSG00000049252)	Ppp6c (ENSMUSG00000026753)	Scai (ENSMUSG00000035236)	Golga1 (ENSMUSG00000026754)
Ryukyu mouse	MODERN SPECIES	11	Galnt13 (MGP_CAROLIEiJ_G0023564)	Rprm (MGP_CAROLIEiJ_G0023563) #7	Arl6ip6 (MGP_CAROLIEiJ_G0023562) #8	Prpf40a (MGP_CAROLIEiJ_G0023561) #9	Fmnl2 (MGP_CAROLIEiJ_G0023560) #10	Stam2 (MGP_CAROLIEiJ_G0023559) #11	Cacnb4 (MGP_CAROLIEiJ_G0023558) #12	Arl5a (MGP_CAROLIEiJ_G0023557) #13	MGP_CAROLIEiJ_G0023556 #14	Rif1 (MGP_CAROLIEiJ_G0023555) #15	Tnfaip6 (MGP_CAROLIEiJ_G0023554) #16	Nmi (MGP_CAROLIEiJ_G0023553) #17	Rbm43 (MGP_CAROLIEiJ_G0023552) #18	Tas2r134 (MGP_CAROLIEiJ_G0023551)	Rnd3 (MGP_CAROLIEiJ_G0023550) #20	Mmadhc (MGP_CAROLIEiJ_G0023549) #22	Lypd6 (MGP_CAROLIEiJ_G0023548) #25	Lypd6b (MGP_CAROLIEiJ_G0023547) #26	Kif5c (MGP_CAROLIEiJ_G0023546) #27	Epc2 (MGP_CAROLIEiJ_G0023545) #29	Mbd5 (MGP_CAROLIEiJ_G0023544) #30	Orc4 (MGP_CAROLIEiJ_G0023543) #31	Acvr2a (MGP_CAROLIEiJ_G0023542) #32	Zeb2 (MGP_CAROLIEiJ_G0023541)	Gtdc1 (MGP_CAROLIEiJ_G0023540)	Arhgap15 (MGP_CAROLIEiJ_G0023539)	MGP_CAROLIEiJ_G0023538	Lrp1b (MGP_CAROLIEiJ_G0023537)	MGP_CAROLIEiJ_G0023536	Ppp6c (MGP_CAROLIEiJ_G0023535)	Scai (MGP_CAROLIEiJ_G0023534)
Shrew mouse	MODERN SPECIES	16	Galnt13 (MGP_PahariEiJ_G0025015)	Rprm (MGP_PahariEiJ_G0025014) #7	Arl6ip6 (MGP_PahariEiJ_G0025013) #8	Prpf40a (MGP_PahariEiJ_G0025012) #9	Fmnl2 (MGP_PahariEiJ_G0025011) #10	Stam2 (MGP_PahariEiJ_G0025010) #11	Cacnb4 (MGP_PahariEiJ_G0025009) #12	Arl5a (MGP_PahariEiJ_G0025008) #13	MGP_PahariEiJ_G0025007 #14	Rif1 (MGP_PahariEiJ_G0025006) #15	Tnfaip6 (MGP_PahariEiJ_G0025005) #16	Nmi (MGP_PahariEiJ_G0025004) #17	Rbm43 (MGP_PahariEiJ_G0025003) #18	Tas2r134 (MGP_PahariEiJ_G0025002)	Rnd3 (MGP_PahariEiJ_G0025001) #20	Mmadhc (MGP_PahariEiJ_G0025000) #22	Lypd6 (MGP_PahariEiJ_G0024999) #25	Lypd6b (MGP_PahariEiJ_G0024998) #26	Kif5c (MGP_PahariEiJ_G0024997) #27	Epc2 (MGP_PahariEiJ_G0024996) #29	Mbd5 (MGP_PahariEiJ_G0024995) #30	Orc4 (MGP_PahariEiJ_G0024994) #31	Acvr2a (MGP_PahariEiJ_G0024993) #32	Zeb2 (MGP_PahariEiJ_G0024992)	Gtdc1 (MGP_PahariEiJ_G0024991)	Arhgap15 (MGP_PahariEiJ_G0024990)	Kynu (MGP_PahariEiJ_G0024989)	Lrp1b (MGP_PahariEiJ_G0024988)	Ppp6c (MGP_PahariEiJ_G0024987)	Scai (MGP_PahariEiJ_G0024986)	Golga1 (MGP_PahariEiJ_G0024985)
Rat	MODERN SPECIES	13	Fmnl2 (ENSRNOG00000055567) #10	Dppa5 (ENSRNOG00000029793)	Ndufa2-ps1 (ENSRNOG00000064291)	Stam2 (ENSRNOG00000027447) #11	Cacnb4 (ENSRNOG00000007666) #12	Arl5a (ENSRNOG00000006839) #13	AABR07052125.1 (ENSRNOG00000006829)	Neb (ENSRNOG00000006783) #14	Rif1 (ENSRNOG00000054901) #15	ENSRNOG00000071171	Tnfaip6 (ENSRNOG00000050792) #16	Nmi (ENSRNOG00000027502) #17	Tas2r134 (ENSRNOG00000027510)	Rnd3 (ENSRNOG00000004624) #20	LOC499796 (ENSRNOG00000028112)	Mmadhc (ENSRNOG00000004740) #22	Hnrnpa1-ps20 (ENSRNOG00000005951)	LOC120101547 (ENSRNOG00000048601)	Lypd6 (ENSRNOG00000068044) #25	Ns5atp4-ps3 (ENSRNOG00000027533)	Lypd6b (ENSRNOG00000004614) #26	Kif5c (ENSRNOG00000004680) #27	Epc2 (ENSRNOG00000029447) #29	Mbd5 (ENSRNOG00000027596) #30	Orc4 (ENSRNOG00000005021) #31	Acvr2a (ENSRNOG00000005334) #32	ENSRNOG00000062624	ENSRNOG00000067798	Zeb2 (ENSRNOG00000004677)	Gtdc1 (ENSRNOG00000031038)	Arhgap15 (ENSRNOG00000031168)
Cricetidae	ANCESTRAL SPECIES	12	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT01100000263477.B.d.a.b	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555
Cricetidae_B	ANCESTRAL SPECIES	7	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT01100000263477.B.d.a.b	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00900000141555	ENSGT00950000182883.b.a.a	ENSGT00940000155953
Northern American deer mouse	MODERN SPECIES	17	Rprm (ENSPEMG00000014265) #7	Arl6ip6 (ENSPEMG00000001460) #8	Prpf40a (ENSPEMG00000020838) #9	Fmnl2 (ENSPEMG00000021308) #10	Stam2 (ENSPEMG00000012476) #11	Cacnb4 (ENSPEMG00000000044) #12	ENSPEMG00000010335 #13	Neb (ENSPEMG00000011241) #14	Rif1 (ENSPEMG00000000446) #15	Tnfaip6 (ENSPEMG00000009635) #16	Nmi (ENSPEMG00000013860) #17	Rbm43 (ENSPEMG00000009267) #18	Tas2r134 (ENSPEMG00000026859)	Rnd3 (ENSPEMG00000030018) #20	ENSPEMG00000028309	Mmadhc (ENSPEMG00000015462) #22	Lypd6 (ENSPEMG00000030454) #25	Lypd6b (ENSPEMG00000030753) #26	Kif5c (ENSPEMG00000013456) #27	Epc2 (ENSPEMG00000008844) #29	Mbd5 (ENSPEMG00000012335) #30	Orc4 (ENSPEMG00000013503) #31	Acvr2a (ENSPEMG00000025982) #32	ENSPEMG00000030197	ENSPEMG00000008317	ENSPEMG00000029306	ENSPEMG00000009353	Zeb2 (ENSPEMG00000004029)	Gtdc1 (ENSPEMG00000006747)	Arhgap15 (ENSPEMG00000008557)	Kynu (ENSPEMG00000011128)
Prairie vole	MODERN SPECIES	12	Kcnj3 (ENSMOCG00000020988)	Galnt13 (ENSMOCG00000014596)	Rprm (ENSMOCG00000002172) #7	Arl6ip6 (ENSMOCG00000016947) #8	Prpf40a (ENSMOCG00000009517) #9	Fmnl2 (ENSMOCG00000022812) #10	Stam2 (ENSMOCG00000003177) #11	Cacnb4 (ENSMOCG00000022468) #12	Arl5a (ENSMOCG00000019795) #13	Neb (ENSMOCG00000022729) #14	Rif1 (ENSMOCG00000009381) #15	Tnfaip6 (ENSMOCG00000003915) #16	ENSMOCG00000011562	Rbm43 (ENSMOCG00000007686) #18	Rnd3 (ENSMOCG00000019178) #20	Mmadhc (ENSMOCG00000012955) #22	Lypd6 (ENSMOCG00000006453) #25	Lypd6b (ENSMOCG00000020650) #26	Kif5c (ENSMOCG00000001353) #27	Epc2 (ENSMOCG00000003346) #29	Mbd5 (ENSMOCG00000019347) #30	Orc4 (ENSMOCG00000008587) #31	Acvr2a (ENSMOCG00000001323) #32	ENSMOCG00000007379	Zeb2 (ENSMOCG00000016943)	Gtdc1 (ENSMOCG00000022059)	Arhgap15 (ENSMOCG00000022212)	Kynu (ENSMOCG00000018120)	ENSMOCG00000021528	ENSMOCG00000020186	ENSMOCG00000001529
Cricetinae	ANCESTRAL SPECIES	1	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555
Chinese hamster chok1gshd	MODERN SPECIES	188	Rprm (ENSCGRG00001009462) #7	Arl6ip6 (ENSCGRG00001021408) #8	Prpf40a (ENSCGRG00001022526) #9	Fmnl2 (ENSCGRG00001024179) #10	Stam2 (ENSCGRG00001023878) #11	Cacnb4 (ENSCGRG00001023366) #12	Arl5a (ENSCGRG00001024645) #13	Neb (ENSCGRG00001022624) #14	Rif1 (ENSCGRG00001024589) #15	Tnfaip6 (ENSCGRG00001024845) #16	Nmi (ENSCGRG00001000480) #17	Rbm43 (ENSCGRG00001011129) #18	ENSCGRG00001014515	Tas2r134 (ENSCGRG00001008402)	Rnd3 (ENSCGRG00001018416) #20	Mmadhc (ENSCGRG00001008423) #22	Lypd6 (ENSCGRG00001009801) #25	Lypd6b (ENSCGRG00001008503) #26	Kif5c (ENSCGRG00001021373) #27	Epc2 (ENSCGRG00001024568) #29	Mbd5 (ENSCGRG00001001266) #30	Orc4 (ENSCGRG00001001352) #31	Acvr2a (ENSCGRG00001024754) #32	ENSCGRG00001000890	Zeb2 (ENSCGRG00001003812)	ENSCGRG00001006690	Gtdc1 (ENSCGRG00001014426)	ENSCGRG00001008381	Arhgap15 (ENSCGRG00001011371)	Kynu (ENSCGRG00001005556)	ENSCGRG00001012428
Golden Hamster	MODERN SPECIES	633	Nr4a2 (ENSMAUG00000009371)	ENSMAUG00000018084	Galnt13 (ENSMAUG00000007643)	Rprm (ENSMAUG00000018060) #7	Arl6ip6 (ENSMAUG00000001987) #8	Prpf40a (ENSMAUG00000020074) #9	Fmnl2 (ENSMAUG00000013048) #10	Stam2 (ENSMAUG00000000322) #11	Cacnb4 (ENSMAUG00000014567) #12	Arl5a (ENSMAUG00000011769) #13	Neb (ENSMAUG00000004953) #14	Rif1 (ENSMAUG00000013158) #15	Nmi (ENSMAUG00000011421) #17	Rbm43 (ENSMAUG00000012908) #18	Rnd3 (ENSMAUG00000011617) #20	Mmadhc (ENSMAUG00000011028) #22	Lypd6 (ENSMAUG00000009256) #25	Lypd6b (ENSMAUG00000013712) #26	Kif5c (ENSMAUG00000009793) #27	ENSMAUG00000001219 #29	ENSMAUG00000000214 #30	Orc4 (ENSMAUG00000013801) #31	Acvr2a (ENSMAUG00000018729) #32	ENSMAUG00000017030	ENSMAUG00000016231	Zeb2 (ENSMAUG00000015393)	Gtdc1 (ENSMAUG00000001170)	Arhgap15 (ENSMAUG00000012165)	Kynu (ENSMAUG00000013067)	ENSMAUG00000009235	Lrp1b (ENSMAUG00000019371)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1881							ENSNGAG00000011525 #14	Rif1 (ENSNGAG00000009268) #15	Tnfaip6 (ENSNGAG00000007671) #16	ENSNGAG00000013509	Rbm43 (ENSNGAG00000016028) #18	Tas2r134 (ENSNGAG00000015380)	Rnd3 (ENSNGAG00000001477) #20	ENSNGAG00000000384	ENSNGAG00000014803	Mmadhc (ENSNGAG00000008470) #22	Lypd6 (ENSNGAG00000010779) #25	Lypd6b (ENSNGAG00000012606) #26	Kif5c (ENSNGAG00000020904) #27	Epc2 (ENSNGAG00000015488) #29	Mbd5 (ENSNGAG00000018784) #30	Orc4 (ENSNGAG00000012001) #31	Acvr2a (ENSNGAG00000020006) #32	Zeb2 (ENSNGAG00000016618)	ENSNGAG00000000981	Gtdc1 (ENSNGAG00000011627)	Arhgap15 (ENSNGAG00000003717)	Kynu (ENSNGAG00000015519)	ENSNGAG00000005556	Lrp1b (ENSNGAG00000000689)	ENSNGAG00000009773
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	46	ENSJJAG00000023428	Arl6ip6 (ENSJJAG00000019266) #8	Prpf40a (ENSJJAG00000004636) #9	Fmnl2 (ENSJJAG00000021375) #10	Stam2 (ENSJJAG00000009817) #11	Cacnb4 (ENSJJAG00000016900) #12	ENSJJAG00000015512 #13	Neb (ENSJJAG00000012568) #14	Rif1 (ENSJJAG00000023000) #15	Tnfaip6 (ENSJJAG00000020536) #16	Nmi (ENSJJAG00000011126) #17	Rbm43 (ENSJJAG00000000368) #18	ENSJJAG00000011149	Rnd3 (ENSJJAG00000015179) #20	ENSJJAG00000011930	ENSJJAG00000012494 #22	Lypd6 (ENSJJAG00000020503) #25	Lypd6b (ENSJJAG00000011004) #26	ENSJJAG00000021666 #27	Epc2 (ENSJJAG00000023818) #29	Mbd5 (ENSJJAG00000023609) #30	Orc4 (ENSJJAG00000011085) #31	Acvr2a (ENSJJAG00000014798) #32	ENSJJAG00000017205	ENSJJAG00000000614	ENSJJAG00000011334	Zeb2 (ENSJJAG00000015138)	ENSJJAG00000012093	Gtdc1 (ENSJJAG00000022232)	Arhgap15 (ENSJJAG00000002439)	Kynu (ENSJJAG00000011644)
Lesser Egyptian jerboa	MODERN SPECIES	42	Washc4 (ENSJJAG00000019116)	Aldh1l2 (ENSJJAG00000014933)	Nopchap1 (ENSJJAG00000021635)	Slc41a2 (ENSJJAG00000020225)	Chst11 (ENSJJAG00000021100)	Txnrd1 (ENSJJAG00000011665)	Eid3 (ENSJJAG00000004838)	ENSJJAG00000021684	Hcfc2 (ENSJJAG00000019901)	Glt8d2 (ENSJJAG00000017860)	ENSJJAG00000022782	Hsp90b1 (ENSJJAG00000020393)	Ttc41 (ENSJJAG00000009462)	Nt5dc3 (ENSJJAG00000017888)	Stab2 (ENSJJAG00000015484)	ENSJJAG00000018477 #22	Ascl1 (ENSJJAG00000016132)	Pah (ENSJJAG00000017337)	ENSJJAG00000019988	Pmch (ENSJJAG00000021592)	ENSJJAG00000021125	Nup37 (ENSJJAG00000018864)	Washc3 (ENSJJAG00000019930)	Dram1 (ENSJJAG00000023953)	ENSJJAG00000022706	Sycp3 (ENSJJAG00000017653)	ENSJJAG00000001967	Mybpc1 (ENSJJAG00000020768)	ENSJJAG00000020719	Utp20 (ENSJJAG00000019321)	Slc5a8 (ENSJJAG00000018761)
Kangaroo rat	MODERN SPECIES	324	Rprm (ENSDORG00000003407) #7	ENSDORG00000028417	Arl6ip6 (ENSDORG00000006761) #8	Prpf40a (ENSDORG00000006757) #9	Fmnl2 (ENSDORG00000029929) #10	Stam2 (ENSDORG00000007927) #11	Cacnb4 (ENSDORG00000007926) #12	ENSDORG00000003082 #13	Neb (ENSDORG00000004258) #14	Tnfaip6 (ENSDORG00000016446) #16	ENSDORG00000028394	Nmi (ENSDORG00000024973) #17	ENSDORG00000009537 #18	ENSDORG00000023373	Rnd3 (ENSDORG00000024571) #20	Mmadhc (ENSDORG00000000305) #22	Lypd6 (ENSDORG00000023908) #25	Lypd6b (ENSDORG00000013117) #26	Kif5c (ENSDORG00000006160) #27	Epc2 (ENSDORG00000001353) #29	ENSDORG00000014257 #30	ENSDORG00000026847	Orc4 (ENSDORG00000014453) #31	Acvr2a (ENSDORG00000014448) #32	ENSDORG00000028052
Rodentia_A	ANCESTRAL SPECIES	13	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953
Hystricomorpha	ANCESTRAL SPECIES	20	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953
Hystricomorpha_a	ANCESTRAL SPECIES	17	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953
Hystricomorpha_b	ANCESTRAL SPECIES	67	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862
Degu	DUPLICATION
Degu	MODERN SPECIES	123	ENSODEG00000004433	STAM2 (ENSODEG00000004336) #11	ENSODEG00000019186	ENSODEG00000004294	CACNB4 (ENSODEG00000003835) #12	ENSODEG00000003628 #13	ENSODEG00000003755	NEB (ENSODEG00000004729) #14	RIF1 (ENSODEG00000003950) #15	TNFAIP6 (ENSODEG00000003733) #16	NMI (ENSODEG00000003668) #17	RBM43 (ENSODEG00000003642) #18	ENSODEG00000018963	RND3 (ENSODEG00000003549) #20	ENSODEG00000003457	ENSODEG00000003416 #22	LYPD6 (ENSODEG00000003357) #25	LYPD6B (ENSODEG00000003306) #26	ENSODEG00000018967	KIF5C (ENSODEG00000003161) #27	EPC2 (ENSODEG00000003123) #29	ENSODEG00000003098	ENSODEG00000003076 #30	ENSODEG00000018860	ENSODEG00000002909	ENSODEG00000002882	ORC4 (ENSODEG00000007273) #31	ACVR2A (ENSODEG00000007139) #32	ZEB2 (ENSODEG00000006916)	ENSODEG00000006826	ENSODEG00000006741
Degu	MODERN SPECIES	58																ENSODEG00000014810 #22	ENSODEG00000016922	EPHX1 (ENSODEG00000014812)	ENSODEG00000015075	ENAH (ENSODEG00000014853)	ENSODEG00000015198	CNIH3 (ENSODEG00000015526)	WDR26 (ENSODEG00000014639)	CNIH4 (ENSODEG00000014547)	NVL (ENSODEG00000015119)	DEGS1 (ENSODEG00000014645)	ENSODEG00000015588	ENSODEG00000015647	TP53BP2 (ENSODEG00000014627)	CAPN2 (ENSODEG00000014888)	ENSODEG00000015314
Long-tailed chinchilla	MODERN SPECIES	147		KCNJ3 (ENSCLAG00000004537)	GALNT13 (ENSCLAG00000004217)	PRPF40A (ENSCLAG00000001774) #9	FMNL2 (ENSCLAG00000001515) #10	STAM2 (ENSCLAG00000001380) #11	CACNB4 (ENSCLAG00000005759) #12	ENSCLAG00000005398 #13	NEB (ENSCLAG00000002157) #14	RIF1 (ENSCLAG00000001517) #15	TNFAIP6 (ENSCLAG00000002857) #16	NMI (ENSCLAG00000002759) #17	RBM43 (ENSCLAG00000002635) #18	ENSCLAG00000002555 #20	ENSCLAG00000002537	MMADHC (ENSCLAG00000002129) #22	LYPD6 (ENSCLAG00000001952) #25	LYPD6B (ENSCLAG00000002017) #26	KIF5C (ENSCLAG00000001868) #27	EPC2 (ENSCLAG00000001768) #29	MBD5 (ENSCLAG00000001690) #30	ORC4 (ENSCLAG00000002811) #31	ACVR2A (ENSCLAG00000002708) #32	ZEB2 (ENSCLAG00000002230)	GTDC1 (ENSCLAG00000007819)	ARHGAP15 (ENSCLAG00000006756)	KYNU (ENSCLAG00000005935)	LRP1B (ENSCLAG00000002036)	NXPH2 (ENSCLAG00000017455)	SPOPL (ENSCLAG00000001710)	HNMT (ENSCLAG00000001523)
Guinea pig	MODERN SPECIES	3	GALNT13 (ENSCPOG00000013115)	RPRM (ENSCPOG00000005597) #7	PRPF40A (ENSCPOG00000013494) #9	FMNL2 (ENSCPOG00000013482) #10	STAM2 (ENSCPOG00000002847) #11	CACNB4 (ENSCPOG00000026052) #12	ARL5A (ENSCPOG00000005209) #13	NEB (ENSCPOG00000005161) #14	RIF1 (ENSCPOG00000037898) #15	ENSCPOG00000038795	TNFAIP6 (ENSCPOG00000007974) #16	NMI (ENSCPOG00000013053) #17	RBM43 (ENSCPOG00000037758) #18	ENSCPOG00000033292	RND3 (ENSCPOG00000035751) #20	MMADHC (ENSCPOG00000007690) #22	LYPD6 (ENSCPOG00000007686) #25	LYPD6B (ENSCPOG00000034526) #26	KIF5C (ENSCPOG00000026278) #27	EPC2 (ENSCPOG00000008502) #29	MBD5 (ENSCPOG00000006236) #30	ORC4 (ENSCPOG00000008580) #31	ACVR2A (ENSCPOG00000008575) #32	ZEB2 (ENSCPOG00000004182)	ENSCPOG00000035797	GTDC1 (ENSCPOG00000007030)	ARHGAP15 (ENSCPOG00000007467)	KYNU (ENSCPOG00000011220)	ENSCPOG00000021859	ENSCPOG00000038865	LRP1B (ENSCPOG00000014122)
Naked mole-rat female	MODERN SPECIES	22	ENSHGLG00000037482	ENSHGLG00000050584	ENSHGLG00000013230	ENSHGLG00000012563	NCKAP1 (ENSHGLG00000012280)	FRZB (ENSHGLG00000011729)	ENSHGLG00000009430	ENSHGLG00000001353	NMI (ENSHGLG00000034716) #17	ENSHGLG00000001571 #18	ENSHGLG00000037472	ENSHGLG00000049018	ENSHGLG00000044159 #20	ENSHGLG00000014111	ENSHGLG00000044811	ENSHGLG00000011653 #22	ENSHGLG00000010446 #25	ENSHGLG00000008540	LYPD6B (ENSHGLG00000037498) #26	ENSHGLG00000020241	ENSHGLG00000003241	KIF5C (ENSHGLG00000002894) #27	EPC2 (ENSHGLG00000001526) #29	ENSHGLG00000042407	ENSHGLG00000045749	MBD5 (ENSHGLG00000000588) #30	ENSHGLG00000012065	ENSHGLG00000042968	ORC4 (ENSHGLG00000035874) #31	ACVR2A (ENSHGLG00000046847) #32	ENSHGLG00000036243
Sciuridae	ANCESTRAL SPECIES	10	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.fb.a #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00490000043329.a.a.a.k.a	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526.c.b #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862
Marmotini	ANCESTRAL SPECIES	2	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.fb.a #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00490000043329.a.a.a.k.a	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526.c.b #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862
Marmotini_b	ANCESTRAL SPECIES	10	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714.fb.a #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00490000043329.a.a.a.k.a	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526.c.b #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862
Squirrel	MODERN SPECIES	69	GALNT13 (ENSSTOG00000011628)	RPRM (ENSSTOG00000026311) #7	ARL6IP6 (ENSSTOG00000001658) #8	PRPF40A (ENSSTOG00000001642) #9	FMNL2 (ENSSTOG00000001614) #10	STAM2 (ENSSTOG00000025023) #11	CACNB4 (ENSSTOG00000016328) #12	ARL5A (ENSSTOG00000016326) #13	NEB (ENSSTOG00000016315) #14	RIF1 (ENSSTOG00000020712) #15	TNFAIP6 (ENSSTOG00000016314) #16	NMI (ENSSTOG00000028659) #17	RBM43 (ENSSTOG00000016311) #18	ENSSTOG00000021862	RND3 (ENSSTOG00000009798) #20	MMADHC (ENSSTOG00000021576) #22	LYPD6 (ENSSTOG00000029572) #25	LYPD6B (ENSSTOG00000021300) #26	KIF5C (ENSSTOG00000008408) #27	EPC2 (ENSSTOG00000010468) #29	MBD5 (ENSSTOG00000024028) #30	ORC4 (ENSSTOG00000026092) #31	ACVR2A (ENSSTOG00000025105) #32	ENSSTOG00000032731	ZEB2 (ENSSTOG00000003811)	GTDC1 (ENSSTOG00000016373)	ARHGAP15 (ENSSTOG00000009312)	KYNU (ENSSTOG00000009286)	LRP1B (ENSSTOG00000002686)	ENSSTOG00000031059	NXPH2 (ENSSTOG00000001587)
Arctic ground squirrel	MODERN SPECIES	3	ARL6IP6 (ENSUPAG00010000239) #8	PRPF40A (ENSUPAG00010000254) #9	FMNL2 (ENSUPAG00010000658) #10	STAM2 (ENSUPAG00010001468) #11	ENSUPAG00010001568	CACNB4 (ENSUPAG00010001584) #12	ENSUPAG00010001737 #13	NEB (ENSUPAG00010001764) #14	RIF1 (ENSUPAG00010002377) #15	TNFAIP6 (ENSUPAG00010004346) #16	NMI (ENSUPAG00010004358) #17	RBM43 (ENSUPAG00010004382) #18	ENSUPAG00010004388	ENSUPAG00010004396	RND3 (ENSUPAG00010004413) #20	MMADHC (ENSUPAG00010004432) #22	LYPD6 (ENSUPAG00010004464) #25	LYPD6B (ENSUPAG00010004479) #26	KIF5C (ENSUPAG00010004496) #27	EPC2 (ENSUPAG00010004529) #29	ENSUPAG00010004532	ENSUPAG00010004533	MBD5 (ENSUPAG00010004537) #30	ORC4 (ENSUPAG00010004557) #31	ACVR2A (ENSUPAG00010004582) #32	ENSUPAG00010004608	ZEB2 (ENSUPAG00010004644)	GTDC1 (ENSUPAG00010004826)	ARHGAP15 (ENSUPAG00010004846)	KYNU (ENSUPAG00010004892)	LRP1B (ENSUPAG00010004938)
Alpin marmot	MODERN SPECIES	5	ENSMMMG00000022120	STAM2 (ENSMMMG00000022104) #11	CACNB4 (ENSMMMG00000022074) #12	ENSMMMG00000022061 #13	NEB (ENSMMMG00000021921) #14	RIF1 (ENSMMMG00000021851) #15	TNFAIP6 (ENSMMMG00000021834) #16	ENSMMMG00000021827	NMI (ENSMMMG00000021825) #17	RBM43 (ENSMMMG00000021824) #18	ENSMMMG00000021801	ENSMMMG00000021776	ENSMMMG00000021771	ENSMMMG00000021752	RND3 (ENSMMMG00000021746) #20	MMADHC (ENSMMMG00000021733) #22	LYPD6 (ENSMMMG00000021723) #25	LYPD6B (ENSMMMG00000021702) #26	KIF5C (ENSMMMG00000021654) #27	ENSMMMG00000021646	EPC2 (ENSMMMG00000021637) #29	ENSMMMG00000021627	ENSMMMG00000021626 #30	ENSMMMG00000021615 #31	ENSMMMG00000021598	ACVR2A (ENSMMMG00000021587) #32	ZEB2 (ENSMMMG00000021492)	GTDC1 (ENSMMMG00000021476)	ENSMMMG00000021461	ARHGAP15 (ENSMMMG00000021442)	KYNU (ENSMMMG00000021410)
Eurasian red squirrel	MODERN SPECIES	12	FMNL2 (ENSSVLG00005007277) #10	STAM2 (ENSSVLG00005007197) #11	ENSSVLG00005007179	CACNB4 (ENSSVLG00005005336) #12	ENSSVLG00005004741 #13	ENSSVLG00005004729	NEB (ENSSVLG00005004118) #14	RIF1 (ENSSVLG00005003716) #15	TNFAIP6 (ENSSVLG00005003640) #16	ENSSVLG00005003622	ENSSVLG00005003611 #17	RBM43 (ENSSVLG00005003593) #18	ENSSVLG00005003570	RND3 (ENSSVLG00005003560) #20	ENSSVLG00005003548	MMADHC (ENSSVLG00005003507) #22	LYPD6 (ENSSVLG00005003472) #25	LYPD6B (ENSSVLG00005003456) #26	KIF5C (ENSSVLG00005003411) #27	EPC2 (ENSSVLG00005003372) #29	MBD5 (ENSSVLG00005003333) #30	ORC4 (ENSSVLG00005003298) #31	ACVR2A (ENSSVLG00005003270) #32	ENSSVLG00005003233	ENSSVLG00005003222	ENSSVLG00005003208	ENSSVLG00005003174	GTDC1 (ENSSVLG00005003107)	ARHGAP15 (ENSSVLG00005003035)	KYNU (ENSSVLG00005002948)	ENSSVLG00005002904
Lagomorpha	ANCESTRAL SPECIES	12	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00950000185140	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862
Rabbit	MODERN SPECIES	18	ENSOCUG00000037766 #9	ENSOCUG00000013216 #10	STAM2 (ENSOCUG00000000344) #11	ENSOCUG00000000144 #12	ARL5A (ENSOCUG00000035346) #13	NEB (ENSOCUG00000017458) #14	ENSOCUG00000035924	RIF1 (ENSOCUG00000017435) #15	TNFAIP6 (ENSOCUG00000013688) #16	ENSOCUG00000038635	NMI (ENSOCUG00000001001) #17	RBM43 (ENSOCUG00000026185) #18	ENSOCUG00000025786	ENSOCUG00000036417	RND3 (ENSOCUG00000001751) #20	MMADHC (ENSOCUG00000008124) #22	LYPD6 (ENSOCUG00000008118) #25	ENSOCUG00000030777	LYPD6B (ENSOCUG00000008346) #26	KIF5C (ENSOCUG00000009699) #27	EPC2 (ENSOCUG00000012712) #29	ENSOCUG00000034178	ENSOCUG00000033587	MBD5 (ENSOCUG00000010432) #30	ORC4 (ENSOCUG00000016412) #31	ACVR2A (ENSOCUG00000016398) #32	ENSOCUG00000030462	ZEB2 (ENSOCUG00000027880)	ENSOCUG00000038697	GTDC1 (ENSOCUG00000002102)	ARHGAP15 (ENSOCUG00000000471)
Pika	MODERN SPECIES	6565																MMADHC (ENSOPRG00000000804) #22
Laurasiatheria	ANCESTRAL SPECIES	12	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00950000185140	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b
Laurasiatheria_a	ANCESTRAL SPECIES	16	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00950000185140	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT01090000260806	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b
Laurasiatheria_b	ANCESTRAL SPECIES	16	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00950000185140	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT01090000260806	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00910000147617
Carnivora	ANCESTRAL SPECIES	17	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00950000185140	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT01090000260806	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00910000147617
Felidae	ANCESTRAL SPECIES	15	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d.e #14	ENSGT00390000012204 #15	ENSGT01050000246169	ENSGT00910000144227.s.b	ENSGT00940000157201 #16	ENSGT01090000260806	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a
Panthera	ANCESTRAL SPECIES	9	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d.e #14	ENSGT00390000012204 #15	ENSGT01050000246169	ENSGT00910000144227.s.b	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00910000147617
Panthera_a	ANCESTRAL SPECIES	6	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d.e #14	ENSGT00390000012204 #15	ENSGT01050000246169	ENSGT00910000144227.s.b	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00940000159225.f	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b
lion	DUPLICATION
lion	MODERN SPECIES	8	RPRM (ENSPLOG00000020616) #7	ARL6IP6 (ENSPLOG00000020626) #8	PRPF40A (ENSPLOG00000020664) #9	FMNL2 (ENSPLOG00000020750) #10	STAM2 (ENSPLOG00000020809) #11	CACNB4 (ENSPLOG00000020979) #12	ARL5A (ENSPLOG00000021319) #13	NEB (ENSPLOG00000021581) #14	RIF1 (ENSPLOG00000022230) #15	ENSPLOG00000022451	ENSPLOG00000022454	TNFAIP6 (ENSPLOG00000022459) #16	NMI (ENSPLOG00000022481) #17	RBM43 (ENSPLOG00000022483) #18	RND3 (ENSPLOG00000022487) #20	ENSPLOG00000022492 #22	LYPD6 (ENSPLOG00000022514) #25	LYPD6B (ENSPLOG00000022518) #26	KIF5C (ENSPLOG00000022528) #27	EPC2 (ENSPLOG00000022534) #29	MBD5 (ENSPLOG00000022542) #30	ENSPLOG00000022549	ORC4 (ENSPLOG00000022553) #31	ACVR2A (ENSPLOG00000004697) #32	ENSPLOG00000004702	ENSPLOG00000004716	ENSPLOG00000004721	ZEB2 (ENSPLOG00000004758)	GTDC1 (ENSPLOG00000004848)	ARHGAP15 (ENSPLOG00000004919)	KYNU (ENSPLOG00000004977)
lion	MODERN SPECIES	12	GALNT1 (ENSPLOG00000006888)	INO80C (ENSPLOG00000006836)	ENSPLOG00000006792	ZNF24 (ENSPLOG00000006764)	ENSPLOG00000006740	ZSCAN30 (ENSPLOG00000006718)	ZNF397 (ENSPLOG00000006695)	MAPRE2 (ENSPLOG00000006621)	DTNA (ENSPLOG00000005942)	NOL4 (ENSPLOG00000005515)	ASXL3 (ENSPLOG00000005440)	CCDC178 (ENSPLOG00000005286)	KLHL14 (ENSPLOG00000005211)	GAREM1 (ENSPLOG00000005192)	MEP1B (ENSPLOG00000005140)	ENSPLOG00000005112 #22	ENSPLOG00000005088	RNF125 (ENSPLOG00000022389)	TRAPPC8 (ENSPLOG00000022330)	B4GALT6 (ENSPLOG00000022300)	TTR (ENSPLOG00000022283)	DSG2 (ENSPLOG00000022264)	DSG3 (ENSPLOG00000022243)	DSG4 (ENSPLOG00000022216)	DSG1 (ENSPLOG00000022177)	DSC1 (ENSPLOG00000022127)	DSC2 (ENSPLOG00000022065)	DSC3 (ENSPLOG00000022023)	ENSPLOG00000021994	CDH2 (ENSPLOG00000021952)	CHST9 (ENSPLOG00000021925)
leopard	DUPLICATION
leopard	MODERN SPECIES	1	ENSPPRG00000015709	FMNL2 (ENSPPRG00000002927) #10	ENSPPRG00000003451	STAM2 (ENSPPRG00000003557) #11	CACNB4 (ENSPPRG00000006549) #12	ARL5A (ENSPPRG00000008024) #13	NEB (ENSPPRG00000002959) #14	RIF1 (ENSPPRG00000003618) #15	ENSPPRG00000003817	ENSPPRG00000016498	TNFAIP6 (ENSPPRG00000004318) #16	NMI (ENSPPRG00000004590) #17	RBM43 (ENSPPRG00000005153) #18	RND3 (ENSPPRG00000007409) #20	ENSPPRG00000007620	ENSPPRG00000008539 #22	LYPD6 (ENSPPRG00000008921) #25	LYPD6B (ENSPPRG00000009609) #26	ENSPPRG00000009816	KIF5C (ENSPPRG00000009950) #27	EPC2 (ENSPPRG00000010357) #29	ENSPPRG00000016642 #29	MBD5 (ENSPPRG00000011397) #30	ORC4 (ENSPPRG00000012919) #31	ACVR2A (ENSPPRG00000013771) #32	ENSPPRG00000016836	ENSPPRG00000016855	ENSPPRG00000016894	ZEB2 (ENSPPRG00000023971)	GTDC1 (ENSPPRG00000002408)	ARHGAP15 (ENSPPRG00000003769)
leopard	MODERN SPECIES	56	COMMD10 (ENSPPRG00000009874)	ARL14EPL (ENSPPRG00000009493)	LVRN (ENSPPRG00000009237)	ENSPPRG00000008578	ATG12 (ENSPPRG00000008425)	CDO1 (ENSPPRG00000008000)	TMED7 (ENSPPRG00000007911)	TICAM2 (ENSPPRG00000016760)	ENSPPRG00000007561	FEM1C (ENSPPRG00000007481)	ENSPPRG00000007175	CCDC112 (ENSPPRG00000006736)	PGGT1B (ENSPPRG00000005679)	TRIM36 (ENSPPRG00000004286)	KCNN2 (ENSPPRG00000003196)	ENSPPRG00000001935 #22	ENSPPRG00000001834	YTHDC2 (ENSPPRG00000001595)	ENSPPRG00000000984	TMED9 (ENSPPRG00000000568)	B4GALT7 (ENSPPRG00000000505)	N4BP3 (ENSPPRG00000000242)	RMND5B (ENSPPRG00000000179)	NHP2 (ENSPPRG00000022505)	HNRNPAB (ENSPPRG00000020542)	PHYKPL (ENSPPRG00000015475)	COL23A1 (ENSPPRG00000014776)	CLK4 (ENSPPRG00000013000)	ZNF354A (ENSPPRG00000011698)	PROP1 (ENSPPRG00000011246)	ENSPPRG00000011161
Tiger	MODERN SPECIES	117	ARL6IP6 (ENSPTIG00000012359) #8	PRPF40A (ENSPTIG00000012673) #9	FMNL2 (ENSPTIG00000013843) #10	STAM2 (ENSPTIG00000014432) #11	CACNB4 (ENSPTIG00000014914) #12	ARL5A (ENSPTIG00000016763) #13	NEB (ENSPTIG00000017078) #14	RIF1 (ENSPTIG00000020652) #15	ENSPTIG00000005642	ENSPTIG00000005894	TNFAIP6 (ENSPTIG00000006051) #16	NMI (ENSPTIG00000006462) #17	RBM43 (ENSPTIG00000006727) #18	RND3 (ENSPTIG00000007120) #20	ENSPTIG00000007407	MMADHC (ENSPTIG00000007512) #22	LYPD6 (ENSPTIG00000007775) #25	LYPD6B (ENSPTIG00000008087) #26	KIF5C (ENSPTIG00000009064) #27	ENSPTIG00000010112	EPC2 (ENSPTIG00000010286) #29	MBD5 (ENSPTIG00000010964) #30	ORC4 (ENSPTIG00000011249) #31	ACVR2A (ENSPTIG00000011911) #32
Cat	MODERN SPECIES	239	PRPF40A (ENSFCAG00000005241) #9	FMNL2 (ENSFCAG00000005239) #10	ENSFCAG00000038415	STAM2 (ENSFCAG00000025382) #11	CACNB4 (ENSFCAG00000024935) #12	ARL5A (ENSFCAG00000014742) #13	ENSFCAG00000006778 #14	RIF1 (ENSFCAG00000029742) #15	ENSFCAG00000052372	ENSFCAG00000040752	TNFAIP6 (ENSFCAG00000027956) #16	ENSFCAG00000053166	NMI (ENSFCAG00000008426) #17	RBM43 (ENSFCAG00000046232) #18	RND3 (ENSFCAG00000023508) #20	MMADHC (ENSFCAG00000005210) #22	LYPD6 (ENSFCAG00000038369) #25	LYPD6B (ENSFCAG00000013261) #26	KIF5C (ENSFCAG00000025089) #27	EPC2 (ENSFCAG00000023979) #29	MBD5 (ENSFCAG00000028925) #30	ORC4 (ENSFCAG00000029890) #31	ACVR2A (ENSFCAG00000023845) #32	ENSFCAG00000037177	ENSFCAG00000022964	ZEB2 (ENSFCAG00000015532)	GTDC1 (ENSFCAG00000012314)	ARHGAP15 (ENSFCAG00000011613)	KYNU (ENSFCAG00000018501)	LRP1B (ENSFCAG00000026584)	NXPH2 (ENSFCAG00000039021)
Caniformia	ANCESTRAL SPECIES	14	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00950000185140	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555
Canidae	ANCESTRAL SPECIES	56		ENSGT00390000009987 #8	ENSGT00950000185140	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00390000007539.i.b.a.db.b.b	ENSGT00940000157541 #20	ENSGT00390000009819.a.b.b	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555
Canis_lupus	ANCESTRAL SPECIES	46		ENSGT00390000009987 #8	ENSGT00950000185140	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00390000007539.i.b.a.db.b.b	ENSGT00940000157541 #20	ENSGT00390000009819.a.b.b	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00940000153430.a.b.m.b	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00900000141555
Dingo	MODERN SPECIES	101								ENSCAFG00020016414 #14	RIF1 (ENSCAFG00020016401) #15	TNFAIP6 (ENSCAFG00020016399) #16	NMI (ENSCAFG00020016395) #17	ENSCAFG00020016392	ENSCAFG00020016388	RND3 (ENSCAFG00020016386) #20	ENSCAFG00020016382	MMADHC (ENSCAFG00020016380) #22	LYPD6 (ENSCAFG00020016377) #25	ENSCAFG00020016375	ENSCAFG00020016369 #26	KIF5C (ENSCAFG00020016358) #27	ENSCAFG00020016356	EPC2 (ENSCAFG00020016353) #29	MBD5 (ENSCAFG00020016351) #30	ENSCAFG00020016350	ENSCAFG00020016348	ORC4 (ENSCAFG00020016340) #31	ACVR2A (ENSCAFG00020016337) #32	ZEB2 (ENSCAFG00020016311)	ENSCAFG00020016307	GTDC1 (ENSCAFG00020016302)	ARHGAP15 (ENSCAFG00020016269)
Dog	MODERN SPECIES	10			ENSCAFG00845011052 #8	PRPF40A (ENSCAFG00845010834) #9	FMNL2 (ENSCAFG00845010696) #10	STAM2 (ENSCAFG00845010553) #11	CACNB4 (ENSCAFG00845010078) #12	ARL5A (ENSCAFG00845009827) #13	NEB (ENSCAFG00845009157) #14	RIF1 (ENSCAFG00845008561) #15	TNFAIP6 (ENSCAFG00845008460) #16	NMI (ENSCAFG00845008371) #17	ENSCAFG00845008302	RND3 (ENSCAFG00845008171) #20	ENSCAFG00845008096	MMADHC (ENSCAFG00845007815) #22	LYPD6 (ENSCAFG00845007742) #25	LYPD6B (ENSCAFG00845007654) #26	KIF5C (ENSCAFG00845007529) #27	ENSCAFG00845007463	EPC2 (ENSCAFG00845007263) #29	ENSCAFG00845007155	MBD5 (ENSCAFG00845006841) #30	ENSCAFG00845006609	ORC4 (ENSCAFG00845006436) #31	ACVR2A (ENSCAFG00845006266) #32	ZEB2 (ENSCAFG00845006084)	GTDC1 (ENSCAFG00845013883)	ARHGAP15 (ENSCAFG00845013638)	KYNU (ENSCAFG00845013520)	ENSCAFG00845013470
Red fox	MODERN SPECIES	68			PRPF40A (ENSVVUG00000020983) #9	FMNL2 (ENSVVUG00000014597) #10	STAM2 (ENSVVUG00000014345) #11	CACNB4 (ENSVVUG00000014341) #12	ARL5A (ENSVVUG00000014338) #13	ENSVVUG00000012589 #14	RIF1 (ENSVVUG00000011293) #15	TNFAIP6 (ENSVVUG00000011234) #16	NMI (ENSVVUG00000011210) #17	ENSVVUG00000011201	ENSVVUG00000011159	RND3 (ENSVVUG00000011125) #20	ENSVVUG00000011106	MMADHC (ENSVVUG00000011072) #22	LYPD6 (ENSVVUG00000011061) #25	LYPD6B (ENSVVUG00000011026) #26	KIF5C (ENSVVUG00000010993) #27	EPC2 (ENSVVUG00000010983) #29	MBD5 (ENSVVUG00000010972) #30	ORC4 (ENSVVUG00000010947) #31	ACVR2A (ENSVVUG00000010940) #32	ZEB2 (ENSVVUG00000010869)	ENSVVUG00000010866	GTDC1 (ENSVVUG00000010792)	ARHGAP15 (ENSVVUG00000010769)	KYNU (ENSVVUG00000010732)	ENSVVUG00000010703
Caniformia_b	ANCESTRAL SPECIES	13	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00950000185140	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a
Ursidae	ANCESTRAL SPECIES	7	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00950000185140	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000008783.ab.b	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b
Ursus	ANCESTRAL SPECIES	4	ENSGT00940000158904	ENSGT01030000235022	ENSGT00390000009987 #8	ENSGT00950000185140	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30
Polar bear	MODERN SPECIES	142	ENSUMAG00000005367	ARL6IP6 (ENSUMAG00000005362) #8	ENSUMAG00000005352	PRPF40A (ENSUMAG00000004414) #9	FMNL2 (ENSUMAG00000003036) #10	STAM2 (ENSUMAG00000002864) #11	CACNB4 (ENSUMAG00000002493) #12	ARL5A (ENSUMAG00000002404) #13	NEB (ENSUMAG00000001360) #14	RIF1 (ENSUMAG00000000337) #15	ENSUMAG00000000262	TNFAIP6 (ENSUMAG00000000232) #16	NMI (ENSUMAG00000000174) #17	RBM43 (ENSUMAG00000000092) #18	RND3 (ENSUMAG00000020869) #20	MMADHC (ENSUMAG00000020859) #22	LYPD6 (ENSUMAG00000020846) #25	LYPD6B (ENSUMAG00000020839) #26	KIF5C (ENSUMAG00000020651) #27	EPC2 (ENSUMAG00000020641) #29	MBD5 (ENSUMAG00000020636) #30
American black bear	MODERN SPECIES	3990																MMADHC (ENSUAMG00000017107) #22
Giant Panda	MODERN SPECIES	11	LRP1B (ENSAMEG00000012450)	ENSAMEG00000012519 #21	KYNU (ENSAMEG00000013126)	ARHGAP15 (ENSAMEG00000013114)	GTDC1 (ENSAMEG00000013100)	ENSAMEG00000028035	ZEB2 (ENSAMEG00000009337)	ACVR2A (ENSAMEG00000013434) #32	ORC4 (ENSAMEG00000013398) #31	MBD5 (ENSAMEG00000004750) #30	ENSAMEG00000019708	EPC2 (ENSAMEG00000004689) #29	KIF5C (ENSAMEG00000004598) #27	LYPD6B (ENSAMEG00000004593) #26	LYPD6 (ENSAMEG00000027368) #25	ENSAMEG00000006500 #22	RND3 (ENSAMEG00000025053) #20	ENSAMEG00000028408 #18	NMI (ENSAMEG00000013032) #17	TNFAIP6 (ENSAMEG00000013023) #16	RIF1 (ENSAMEG00000008461) #15	NEB (ENSAMEG00000008502) #14	ARL5A (ENSAMEG00000008735) #13	CACNB4 (ENSAMEG00000008758) #12	STAM2 (ENSAMEG00000008825) #11	FMNL2 (ENSAMEG00000017147) #10	PRPF40A (ENSAMEG00000017179) #9	RPRM (ENSAMEG00000019532) #7	GALNT13 (ENSAMEG00000005613)	ENSAMEG00000027036	KCNJ3 (ENSAMEG00000029906)
Mustelinae	ANCESTRAL SPECIES	21	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00510000055442	ENSGT00940000163732	ENSGT00390000013662	ENSGT00950000182944.B.a	ENSGT00950000182923.B.a	ENSGT00550000075086	ENSGT00940000158159	ENSGT00940000154030.a.a	ENSGT00530000063000.a.b.b	ENSGT00940000158447	ENSGT01090000260100.B	ENSGT00940000153476.a	ENSGT00940000158642	ENSGT00940000155098	ENSGT00900000141059
Ferret	MODERN SPECIES	173	GALNT13 (ENSMPUG00000000427)	RPRM (ENSMPUG00000019433) #7	ENSMPUG00000000415 #8	PRPF40A (ENSMPUG00000000412) #9	FMNL2 (ENSMPUG00000000409) #10	STAM2 (ENSMPUG00000000404) #11	CACNB4 (ENSMPUG00000000400) #12	ARL5A (ENSMPUG00000000396) #13	NEB (ENSMPUG00000000376) #14	RIF1 (ENSMPUG00000000371) #15	TNFAIP6 (ENSMPUG00000000370) #16	NMI (ENSMPUG00000000344) #17	RBM43 (ENSMPUG00000000342) #18	RND3 (ENSMPUG00000000331) #20	ENSMPUG00000000330	MMADHC (ENSMPUG00000000323) #22	ENSMPUG00000000203	ENSMPUG00000000200	PDCD1 (ENSMPUG00000000197)	NEU4 (ENSMPUG00000000195)	GAL3ST2 (ENSMPUG00000000193)	D2HGDH (ENSMPUG00000000191)	ING5 (ENSMPUG00000000190)	DTYMK (ENSMPUG00000000189)	ATG4B (ENSMPUG00000000187)	THAP4 (ENSMPUG00000000182)	BOK (ENSMPUG00000000179)	ENSMPUG00000000178	STK25 (ENSMPUG00000000176)	FARP2 (ENSMPUG00000000175)	SEPTIN2 (ENSMPUG00000000166)
American mink	MODERN SPECIES	275																MMADHC (ENSNVIG00000020125) #22	ENSNVIG00000020114	ENSNVIG00000018582	FAM240C (ENSNVIG00000018529)	CB085 (ENSNVIG00000018518)	PDCD1 (ENSNVIG00000018495)	NEU4 (ENSNVIG00000018459)	GAL3ST2 (ENSNVIG00000018436)	D2HGDH (ENSNVIG00000018435)	ING5 (ENSNVIG00000018407)	DTYMK (ENSNVIG00000018398)	ATG4B (ENSNVIG00000018383)	ENSNVIG00000018363	ENSNVIG00000018353	BOK (ENSNVIG00000018340)	STK25 (ENSNVIG00000018289)
Laurasiatheria_c	ANCESTRAL SPECIES	18	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT01020000230615	ENSGT00960000193288	ENSGT00950000183208.A.c.a	ENSGT00910000147897	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862
Equus	ANCESTRAL SPECIES	18	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT01030000234916	ENSGT00960000193288	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b
Horse	MODERN SPECIES	9	GALNT13 (ENSECAG00000007821)	RPRM (ENSECAG00000001246) #7	ARL6IP6 (ENSECAG00000007580) #8	PRPF40A (ENSECAG00000009113) #9	ENSECAG00000001048	FMNL2 (ENSECAG00000011111) #10	STAM2 (ENSECAG00000021355) #11	CACNB4 (ENSECAG00000056636) #12	ARL5A (ENSECAG00000023672) #13	NEB (ENSECAG00000020638) #14	RIF1 (ENSECAG00000012679) #15	TNFAIP6 (ENSECAG00000012104) #16	NMI (ENSECAG00000006801) #17	RBM43 (ENSECAG00000000566) #18	RND3 (ENSECAG00000021310) #20	MMADHC (ENSECAG00000014503) #22	LYPD6 (ENSECAG00000014321) #25	LYPD6B (ENSECAG00000013932) #26	KIF5C (ENSECAG00000013822) #27	EPC2 (ENSECAG00000010930) #29	ENSECAG00000008805	ENSECAG00000056446	ENSECAG00000055420	MBD5 (ENSECAG00000024839) #30	ORC4 (ENSECAG00000013910) #31	ACVR2A (ENSECAG00000000138) #32	ENSECAG00000039452	ZEB2 (ENSECAG00000019355)	GTDC1 (ENSECAG00000014136)	ARHGAP15 (ENSECAG00000012312)	KYNU (ENSECAG00000018188)
Donkey	MODERN SPECIES	24	GALNT13 (ENSEASG00005023315)	RPRM (ENSEASG00005023316) #7	ARL6IP6 (ENSEASG00005023320) #8	PRPF40A (ENSEASG00005023328) #9	FMNL2 (ENSEASG00005023341) #10	STAM2 (ENSEASG00005023344) #11	CACNB4 (ENSEASG00005023346) #12	ARL5A (ENSEASG00005023347) #13	ENSEASG00005023364 #14	ENSEASG00005038507 #14	RIF1 (ENSEASG00005023434) #15	TNFAIP6 (ENSEASG00005023439) #16	NMI (ENSEASG00005023440) #17	RBM43 (ENSEASG00005033269) #18	RND3 (ENSEASG00005038021) #20	MMADHC (ENSEASG00005023444) #22	LYPD6 (ENSEASG00005023445) #25	LYPD6B (ENSEASG00005032417) #26	KIF5C (ENSEASG00005023448) #27	EPC2 (ENSEASG00005023449) #29	MBD5 (ENSEASG00005023450) #30	ORC4 (ENSEASG00005023452) #31	ACVR2A (ENSEASG00005023453) #32	ENSEASG00005033216	ENSEASG00005023460	ENSEASG00005023463	ENSEASG00005024596	ZEB2 (ENSEASG00005030252)	GTDC1 (ENSEASG00005023470)	ARHGAP15 (ENSEASG00005023473)	KYNU (ENSEASG00005023479)
Chiroptera	ANCESTRAL SPECIES	11	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00910000147897	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a
Megabat	MODERN SPECIES	1321																MMADHC (ENSPVAG00000008814) #22	LYPD6 (ENSPVAG00000008813) #25	LYPD6B (ENSPVAG00000008811) #26
Microchiroptera	ANCESTRAL SPECIES	15	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00910000147897	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a
Greater horseshoe bat	MODERN SPECIES	26	GALNT13 (ENSRFEG00010001100)	RPRM (ENSRFEG00010001141) #7	ARL6IP6 (ENSRFEG00010001173) #8	PRPF40A (ENSRFEG00010001279) #9	FMNL2 (ENSRFEG00010001562) #10	STAM2 (ENSRFEG00010001637) #11	CACNB4 (ENSRFEG00010001762) #12	ARL5A (ENSRFEG00010001991) #13	NEB (ENSRFEG00010003197) #14	RIF1 (ENSRFEG00010004943) #15	TNFAIP6 (ENSRFEG00010004979) #16	NMI (ENSRFEG00010004983) #17	RBM43 (ENSRFEG00010004990) #18	RND3 (ENSRFEG00010005000) #20	ENSRFEG00010005006	MMADHC (ENSRFEG00010005008) #22	LYPD6 (ENSRFEG00010005018) #25	ENSRFEG00010005025	LYPD6B (ENSRFEG00010005029) #26	KIF5C (ENSRFEG00010005056) #27	EPC2 (ENSRFEG00010005117) #29	MBD5 (ENSRFEG00010005157) #30	ORC4 (ENSRFEG00010005186) #31	ACVR2A (ENSRFEG00010005214) #32	ENSRFEG00010005235	ENSRFEG00010005242	ZEB2 (ENSRFEG00010005264)	ENSRFEG00010005283	GTDC1 (ENSRFEG00010005310)	ARHGAP15 (ENSRFEG00010005362)	KYNU (ENSRFEG00010005399)
Microbat	MODERN SPECIES	1175									NEB (ENSMLUG00000003393) #14	RIF1 (ENSMLUG00000003376) #15	TNFAIP6 (ENSMLUG00000028087) #16	NMI (ENSMLUG00000002734) #17	RBM43 (ENSMLUG00000002729) #18	RND3 (ENSMLUG00000014656) #20	ENSMLUG00000015279	MMADHC (ENSMLUG00000011495) #22	LYPD6 (ENSMLUG00000011480) #25
Artiodactyla	ANCESTRAL SPECIES	13	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b.l #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT01090000260806	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00960000193288	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862
Suina	ANCESTRAL SPECIES	48							ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT01090000260806	ENSGT00530000063686.a.a #17	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00960000193288	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a
Chacoan peccary	MODERN SPECIES	130							STAM2 (ENSCWAG00000004723) #11	CACNB4 (ENSCWAG00000005063) #12	ARL5A (ENSCWAG00000015627) #13	NEB (ENSCWAG00000015808) #14	RIF1 (ENSCWAG00000017662) #15	TNFAIP6 (ENSCWAG00000017746) #16	ENSCWAG00000017775	NMI (ENSCWAG00000017794) #17	RND3 (ENSCWAG00000017833) #20	MMADHC (ENSCWAG00000017904) #22	LYPD6 (ENSCWAG00000017934) #25	LYPD6B (ENSCWAG00000017971) #26	KIF5C (ENSCWAG00000018100) #27	EPC2 (ENSCWAG00000018158) #29	MBD5 (ENSCWAG00000018269) #30	ORC4 (ENSCWAG00000018425) #31	ACVR2A (ENSCWAG00000018473) #32	ENSCWAG00000018510	ZEB2 (ENSCWAG00000018538)	ENSCWAG00000018682	GTDC1 (ENSCWAG00000018711)	ARHGAP15 (ENSCWAG00000018864)	KYNU (ENSCWAG00000018949)	LRP1B (ENSCWAG00000019047)	NXPH2 (ENSCWAG00000019401)
Pig	MODERN SPECIES	6			ENSSSCG00000043514	ENSSSCG00000032174	STAM2 (ENSSSCG00000016399) #11	CACNB4 (ENSSSCG00000029073) #12	ARL5A (ENSSSCG00000031541) #13	NEB (ENSSSCG00000016397) #14	RIF1 (ENSSSCG00000016395) #15	TNFAIP6 (ENSSSCG00000023716) #16	NMI (ENSSSCG00000022011) #17	ENSSSCG00000060497	ENSSSCG00000047930	RND3 (ENSSSCG00000040445) #20	ENSSSCG00000050050	MMADHC (ENSSSCG00000028646) #22	LYPD6 (ENSSSCG00000023627) #25	LYPD6B (ENSSSCG00000015677) #26	KIF5C (ENSSSCG00000022919) #27	EPC2 (ENSSSCG00000027211) #29	MBD5 (ENSSSCG00000015667) #30	ORC4 (ENSSSCG00000015668) #31	ACVR2A (ENSSSCG00000015669) #32	ENSSSCG00000053606	ENSSSCG00000021343	GTDC1 (ENSSSCG00000015670)	ARHGAP15 (ENSSSCG00000015671)	ENSSSCG00000043635	ENSSSCG00000052768	ENSSSCG00000045622	KYNU (ENSSSCG00000015673)
Artiodactyla_a	ANCESTRAL SPECIES	13	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b.l #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a
Camelidae	ANCESTRAL SPECIES	16	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b.k.a #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953
Arabian camel	MODERN SPECIES	31	ARL6IP6 (ENSCDRG00005001080) #8	PRPF40A (ENSCDRG00005000977) #9	ENSCDRG00005000923 #10	ENSCDRG00005000883 #10	STAM2 (ENSCDRG00005000826) #11	CACNB4 (ENSCDRG00005000236) #12	ENSCDRG00005000095 #13	NEB (ENSCDRG00005021457) #14	RIF1 (ENSCDRG00005021396) #15	TNFAIP6 (ENSCDRG00005021390) #16	ENSCDRG00005021387	NMI (ENSCDRG00005021380) #17	RBM43 (ENSCDRG00005021377) #18	RND3 (ENSCDRG00005021370) #20	ENSCDRG00005021367	MMADHC (ENSCDRG00005021361) #22	LYPD6 (ENSCDRG00005021357) #25	LYPD6B (ENSCDRG00005021351) #26	KIF5C (ENSCDRG00005021347) #27	EPC2 (ENSCDRG00005021337) #29	MBD5 (ENSCDRG00005021329) #30	ORC4 (ENSCDRG00005021323) #31	ACVR2A (ENSCDRG00005021318) #32	ENSCDRG00005021315	ENSCDRG00005021311	ZEB2 (ENSCDRG00005021107)	GTDC1 (ENSCDRG00005021037)	ARHGAP15 (ENSCDRG00005021017)	KYNU (ENSCDRG00005021006)	LRP1B (ENSCDRG00005019331)	NXPH2 (ENSCDRG00005019171)
Alpaca	MODERN SPECIES	4894															RND3 (ENSVPAG00000009769) #20	MMADHC (ENSVPAG00000009765) #22
Artiodactyla_b	ANCESTRAL SPECIES	12	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b.l #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a
Cetacea	ANCESTRAL SPECIES	14	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b.l #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542.a #31	ENSGT00940000157233 #32	ENSGT00390000011401.ib	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b
Blue whale	MODERN SPECIES	18	GALNT13 (ENSBMSG00010005342)	RPRM (ENSBMSG00010005320) #7	ARL6IP6 (ENSBMSG00010005306) #8	PRPF40A (ENSBMSG00010005288) #9	FMNL2 (ENSBMSG00010005238) #10	STAM2 (ENSBMSG00010005180) #11	CACNB4 (ENSBMSG00010003258) #12	ARL5A (ENSBMSG00010002880) #13	NEB (ENSBMSG00010002643) #14	RIF1 (ENSBMSG00010002436) #15	ENSBMSG00010002399	TNFAIP6 (ENSBMSG00010002386) #16	NMI (ENSBMSG00010002366) #17	RBM43 (ENSBMSG00010002353) #18	RND3 (ENSBMSG00010002335) #20	MMADHC (ENSBMSG00010002313) #22	LYPD6 (ENSBMSG00010002294) #25	ENSBMSG00010002277 #27	EPC2 (ENSBMSG00010002250) #29	MBD5 (ENSBMSG00010002215) #30	ENSBMSG00010002178 #31	ACVR2A (ENSBMSG00010002163) #32	ENSBMSG00010002138	ENSBMSG00010002128	ENSBMSG00010002117	ENSBMSG00010002099	ENSBMSG00010002077	GTDC1 (ENSBMSG00010001738)	ARHGAP15 (ENSBMSG00010001671)	KYNU (ENSBMSG00010001637)	LRP1B (ENSBMSG00010001555)
Odontoceti	ANCESTRAL SPECIES	13	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b.l #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542.a #31	ENSGT00940000157233 #32	ENSGT00390000011401.ib	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b
Sperm whale	MODERN SPECIES	11	GALNT13 (ENSPCTG00005007385)	RPRM (ENSPCTG00005007360) #7	ARL6IP6 (ENSPCTG00005007339) #8	PRPF40A (ENSPCTG00005007224) #9	FMNL2 (ENSPCTG00005007168) #10	STAM2 (ENSPCTG00005007069) #11	CACNB4 (ENSPCTG00005003013) #12	ARL5A (ENSPCTG00005002661) #13	NEB (ENSPCTG00005002027) #14	RIF1 (ENSPCTG00005001703) #15	TNFAIP6 (ENSPCTG00005001643) #16	NMI (ENSPCTG00005001633) #17	RBM43 (ENSPCTG00005001620) #18	ENSPCTG00005001612	RND3 (ENSPCTG00005001596) #20	MMADHC (ENSPCTG00005001565) #22	LYPD6 (ENSPCTG00005001545) #25	LYPD6B (ENSPCTG00005001526) #26	KIF5C (ENSPCTG00005001462) #27	EPC2 (ENSPCTG00005001424) #29	MBD5 (ENSPCTG00005001400) #30	ORC4 (ENSPCTG00005001367) #31	ACVR2A (ENSPCTG00005001345) #32	ENSPCTG00005001332	ENSPCTG00005001317	ENSPCTG00005001311	ZEB2 (ENSPCTG00005001256)	ENSPCTG00005001214	GTDC1 (ENSPCTG00005001099)	ARHGAP15 (ENSPCTG00005001030)	KYNU (ENSPCTG00005000984)
Odontoceti_a	ANCESTRAL SPECIES	10	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987.m #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b.l #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542.a #31	ENSGT00940000157233 #32	ENSGT00390000011401.ib	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b
Odontoceti_b	ANCESTRAL SPECIES	12	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987.m #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b.l #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00390000008496.j.b.a	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542.a #31	ENSGT00940000157233 #32	ENSGT00900000143820	ENSGT00390000011401.ib	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033
Monodontidae	ANCESTRAL SPECIES	10	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987.m #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b.l #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00390000008496.j.b.a	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542.a #31	ENSGT00940000157233 #32	ENSGT00900000143820	ENSGT00390000011401.ib	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033
Beluga whale	MODERN SPECIES	84	GALNT13 (ENSDLEG00000021650)	RPRM (ENSDLEG00000021644) #7	ENSDLEG00000021642	ARL6IP6 (ENSDLEG00000021640) #8	PRPF40A (ENSDLEG00000021630) #9	FMNL2 (ENSDLEG00000021565) #10	STAM2 (ENSDLEG00000021549) #11	CACNB4 (ENSDLEG00000021384) #12	ARL5A (ENSDLEG00000021351) #13	NEB (ENSDLEG00000018861) #14	RIF1 (ENSDLEG00000018312) #15	TNFAIP6 (ENSDLEG00000018296) #16	NMI (ENSDLEG00000018288) #17	RBM43 (ENSDLEG00000018283) #18	RND3 (ENSDLEG00000018265) #20	MMADHC (ENSDLEG00000018246) #22	LYPD6 (ENSDLEG00000018237) #25	ENSDLEG00000018220	LYPD6B (ENSDLEG00000018208) #26	KIF5C (ENSDLEG00000018081) #27	EPC2 (ENSDLEG00000018060) #29	MBD5 (ENSDLEG00000018041) #30	ORC4 (ENSDLEG00000017980) #31	ACVR2A (ENSDLEG00000017968) #32	ENSDLEG00000017961	ENSDLEG00000017945	ENSDLEG00000017936	ENSDLEG00000017923	ZEB2 (ENSDLEG00000017853)	ENSDLEG00000017836	GTDC1 (ENSDLEG00000017703)
Narwhal	MODERN SPECIES	302	RPRM (ENSMMNG00015008967) #7	ARL6IP6 (ENSMMNG00015008975) #8	PRPF40A (ENSMMNG00015008999) #9	FMNL2 (ENSMMNG00015009039) #10	STAM2 (ENSMMNG00015009058) #11	CACNB4 (ENSMMNG00015009337) #12	ARL5A (ENSMMNG00015009864) #13	NEB (ENSMMNG00015010017) #14	RIF1 (ENSMMNG00015010377) #15	ENSMMNG00015010504	TNFAIP6 (ENSMMNG00015010527) #16	NMI (ENSMMNG00015010557) #17	ENSMMNG00015010578 #18	ENSMMNG00015010594	RND3 (ENSMMNG00015010616) #20	MMADHC (ENSMMNG00015010638) #22	LYPD6 (ENSMMNG00015010654) #25	LYPD6B (ENSMMNG00015010676) #26	KIF5C (ENSMMNG00015010710) #27	EPC2 (ENSMMNG00015010756) #29	MBD5 (ENSMMNG00015010806) #30	ENSMMNG00015010860	ENSMMNG00015010890 #31	ACVR2A (ENSMMNG00015005198) #32	ENSMMNG00015005211	ENSMMNG00015005217	ENSMMNG00015005234	ENSMMNG00015005241	ZEB2 (ENSMMNG00015005275)	ENSMMNG00015005304	GTDC1 (ENSMMNG00015005348)
Vaquita	MODERN SPECIES	18	ENSPSNG00000006041 #8	PRPF40A (ENSPSNG00000006077) #9	FMNL2 (ENSPSNG00000006149) #10	STAM2 (ENSPSNG00000006220) #11	CACNB4 (ENSPSNG00000007389) #12	ARL5A (ENSPSNG00000009575) #13	NEB (ENSPSNG00000012803) #14	RIF1 (ENSPSNG00000022170) #15	ENSPSNG00000022185	TNFAIP6 (ENSPSNG00000022198) #16	ENSPSNG00000022206	NMI (ENSPSNG00000022216) #17	RBM43 (ENSPSNG00000022227) #18	RND3 (ENSPSNG00000022239) #20	ENSPSNG00000022249	MMADHC (ENSPSNG00000022255) #22	LYPD6 (ENSPSNG00000022268) #25	ENSPSNG00000022273	LYPD6B (ENSPSNG00000022285) #26	KIF5C (ENSPSNG00000022304) #27	EPC2 (ENSPSNG00000022315) #29	MBD5 (ENSPSNG00000022326) #30	ENSPSNG00000022333	ENSPSNG00000009867 #31	ACVR2A (ENSPSNG00000010003) #32	ENSPSNG00000010077	ENSPSNG00000010130	ENSPSNG00000010148	ZEB2 (ENSPSNG00000010233)	GTDC1 (ENSPSNG00000010572)	ARHGAP15 (ENSPSNG00000010851)
Dolphin	MODERN SPECIES	3858																MMADHC (ENSTTRG00000013657) #22
Pecora	ANCESTRAL SPECIES	24	ENSGT00940000158904	ENSGT00940000160209.e	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b.l #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555
Yarkand deer	MODERN SPECIES	26	ENSCHYG00000022588	ARL6IP6 (ENSCHYG00000022617) #8	PRPF40A (ENSCHYG00000022725) #9	FMNL2 (ENSCHYG00000023162) #10	ENSCHYG00000023717	STAM2 (ENSCHYG00000023731) #11	CACNB4 (ENSCHYG00000023861) #12	ARL5A (ENSCHYG00000024878) #13	NEB (ENSCHYG00000024952) #14	RIF1 (ENSCHYG00000025435) #15	TNFAIP6 (ENSCHYG00000025495) #16	NMI (ENSCHYG00000025513) #17	RBM43 (ENSCHYG00000025543) #18	ENSCHYG00000025571	RND3 (ENSCHYG00000025578) #20	MMADHC (ENSCHYG00000025604) #22	ENSCHYG00000025627 #25	LYPD6B (ENSCHYG00000025655) #26	KIF5C (ENSCHYG00000008710) #27	EPC2 (ENSCHYG00000008812) #29	MBD5 (ENSCHYG00000009045) #30	ORC4 (ENSCHYG00000009235) #31	ACVR2A (ENSCHYG00000009478) #32	ENSCHYG00000009591	ZEB2 (ENSCHYG00000009791)	GTDC1 (ENSCHYG00000010152)	ARHGAP15 (ENSCHYG00000010616)	KYNU (ENSCHYG00000010703)	LRP1B (ENSCHYG00000010870)	ENSCHYG00000011576	NXPH2 (ENSCHYG00000011648)
Percora_a	ANCESTRAL SPECIES	5	ENSGT00940000158904	ENSGT00940000160209.e	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b.l #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555
Siberian musk deer	MODERN SPECIES	346	GALNT13 (ENSMMSG00000004530)	RPRM (ENSMMSG00000004641) #7	ARL6IP6 (ENSMMSG00000004675) #8	PRPF40A (ENSMMSG00000004797) #9	FMNL2 (ENSMMSG00000005210) #10	STAM2 (ENSMMSG00000005295) #11	CACNB4 (ENSMMSG00000005906) #12	ARL5A (ENSMMSG00000016042) #13	NEB (ENSMMSG00000016236) #14	RIF1 (ENSMMSG00000017985) #15	TNFAIP6 (ENSMMSG00000018393) #16	NMI (ENSMMSG00000018423) #17	RBM43 (ENSMMSG00000018455) #18	ENSMMSG00000018486	RND3 (ENSMMSG00000018506) #20	MMADHC (ENSMMSG00000018547) #22	LYPD6 (ENSMMSG00000018611) #25	LYPD6B (ENSMMSG00000018636) #26	KIF5C (ENSMMSG00000018662) #27	EPC2 (ENSMMSG00000018790) #29	ENSMMSG00000018886	MBD5 (ENSMMSG00000019026) #30	ENSMMSG00000019093	ORC4 (ENSMMSG00000019167) #31	ACVR2A (ENSMMSG00000019227) #32	ENSMMSG00000019266	ENSMMSG00000019276	ENSMMSG00000019314	ZEB2 (ENSMMSG00000019357)	ENSMMSG00000019525	GTDC1 (ENSMMSG00000019550)
Bovidae	ANCESTRAL SPECIES	8	ENSGT00940000158904	ENSGT00940000160209.e	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b.l #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555	ENSGT00940000153272.a.b.z.a.a.a.b
Caprinae	ANCESTRAL SPECIES	5	ENSGT00940000171318	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b.l #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541.c #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555	ENSGT00940000153272.a.b.z.a.a.a.b
Goat	MODERN SPECIES	11	PRPF40A (ENSCHIG00000011660) #9	FMNL2 (ENSCHIG00000026934) #10	ENSCHIG00000010047	STAM2 (ENSCHIG00000020598) #11	ENSCHIG00000022060	CACNB4 (ENSCHIG00000013367) #12	ARL5A (ENSCHIG00000025329) #13	NEB (ENSCHIG00000014281) #14	RIF1 (ENSCHIG00000020327) #15	TNFAIP6 (ENSCHIG00000013151) #16	NMI (ENSCHIG00000025341) #17	RBM43 (ENSCHIG00000019526) #18	RND3 (ENSCHIG00000022258) #20	ENSCHIG00000010348	ENSCHIG00000020042	MMADHC (ENSCHIG00000026029) #22	LYPD6 (ENSCHIG00000018947) #25	ENSCHIG00000026876	LYPD6B (ENSCHIG00000014675) #26	KIF5C (ENSCHIG00000012226) #27	EPC2 (ENSCHIG00000024313) #29	MBD5 (ENSCHIG00000008638) #30	ORC4 (ENSCHIG00000023781) #31	ACVR2A (ENSCHIG00000013353) #32	ENSCHIG00000026414	ENSCHIG00000012606	ZEB2 (ENSCHIG00000020961)	GTDC1 (ENSCHIG00000022649)	ARHGAP15 (ENSCHIG00000014079)	ENSCHIG00000024301	KYNU (ENSCHIG00000025717)
Rambouillet Sheep	MODERN SPECIES	11	ARL6IP6 (ENSOARG00020022563) #8	PRPF40A (ENSOARG00020022598) #9	FMNL2 (ENSOARG00020023016) #10	ENSOARG00020023393	STAM2 (ENSOARG00020023418) #11	CACNB4 (ENSOARG00020023560) #12	ARL5A (ENSOARG00020024180) #13	NEB (ENSOARG00020024247) #14	RIF1 (ENSOARG00020024396) #15	TNFAIP6 (ENSOARG00020024645) #16	NMI (ENSOARG00020024663) #17	RBM43 (ENSOARG00020024693) #18	ENSOARG00020024716 #20	ENSOARG00020024723	RND3 (ENSOARG00020024731) #20	MMADHC (ENSOARG00020024756) #22	LYPD6 (ENSOARG00020024772) #25	LYPD6B (ENSOARG00020024784) #26	KIF5C (ENSOARG00020024809) #27	EPC2 (ENSOARG00020024888) #29	MBD5 (ENSOARG00020024911) #30	ORC4 (ENSOARG00020024976) #31	ACVR2A (ENSOARG00020025027) #32	ZEB2 (ENSOARG00020025087)	ARHGAP15 (ENSOARG00020025262)	KYNU (ENSOARG00020005939)	LRP1B (ENSOARG00020006148)	ENSOARG00020011176	NXPH2 (ENSOARG00020011226)	SPOPL (ENSOARG00020011256)	ENSOARG00020011354
Bovinae	ANCESTRAL SPECIES	5	ENSGT00940000160209.e	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b.l #10	ENSGT00390000018085.a.b.b	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT01100000264677	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00510000047245.w.a.b	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b
American bison	MODERN SPECIES	3062	ENSBBBG00000013139	ARL6IP6 (ENSBBBG00000013147) #8	PRPF40A (ENSBBBG00000013168) #9	ENSBBBG00000002660 #10	ENSBBBG00000007404	STAM2 (ENSBBBG00000013190) #11	CACNB4 (ENSBBBG00000014165) #12	ARL5A (ENSBBBG00000014197) #13	ENSBBBG00000014203	NEB (ENSBBBG00000003376) #14	RIF1 (ENSBBBG00000014704) #15	TNFAIP6 (ENSBBBG00000014725) #16	NMI (ENSBBBG00000014748) #17	RBM43 (ENSBBBG00000014755) #18	RND3 (ENSBBBG00000014767) #20	MMADHC (ENSBBBG00000007940) #22	LYPD6 (ENSBBBG00000003640) #25	LYPD6B (ENSBBBG00000014801) #26	KIF5C (ENSBBBG00000014835) #27	EPC2 (ENSBBBG00000003658) #29	MBD5 (ENSBBBG00000002808) #30	ENSBBBG00000014898	ORC4 (ENSBBBG00000001184) #31	ACVR2A (ENSBBBG00000001138) #32	ENSBBBG00000001115	ENSBBBG00000001101
Bos	ANCESTRAL SPECIES	6	ENSGT00390000010523.c.b #7	ENSGT00390000007818.e.b.b	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b.l #10	ENSGT00390000018085.a.b.b	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT01100000264677	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00510000047245.w.a.b	ENSGT00940000154940.fb.b	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862
Bos_b	ANCESTRAL SPECIES	3	ENSGT00940000160209.e	ENSGT00390000010523.c.b #7	ENSGT00390000007818.e.b.b	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b.l #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT01100000264677	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00510000047245.w.a.b	ENSGT00940000154940.fb.b	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000154276.jb.a.a.a.a.a.a.b.a.a.b.b
Cow	MODERN SPECIES	11	RPRM (ENSBTAG00000021526) #7	ENSBTAG00000033143	ARL6IP6 (ENSBTAG00000001435) #8	ENSBTAG00000047365	PRPF40A (ENSBTAG00000048151) #9	FMNL2 (ENSBTAG00000026851) #10	STAM2 (ENSBTAG00000001887) #11	CACNB4 (ENSBTAG00000002297) #12	ARL5A (ENSBTAG00000002293) #13	NEB (ENSBTAG00000006907) #14	RIF1 (ENSBTAG00000021020) #15	TNFAIP6 (ENSBTAG00000007239) #16	NMI (ENSBTAG00000032369) #17	RBM43 (ENSBTAG00000016217) #18	RND3 (ENSBTAG00000039731) #20	MMADHC (ENSBTAG00000015962) #22	LYPD6 (ENSBTAG00000047426) #25	LYPD6B (ENSBTAG00000019683) #26	KIF5C (ENSBTAG00000018125) #27	EPC2 (ENSBTAG00000018581) #29	MBD5 (ENSBTAG00000019592) #30	PTMA (ENSBTAG00000051947)	ORC4 (ENSBTAG00000015291) #31	ACVR2A (ENSBTAG00000018114) #32	ENSBTAG00000012376	ENSBTAG00000054108	ZEB2 (ENSBTAG00000048810)	ZEB2 (ENSBTAG00000012615)	GTDC1 (ENSBTAG00000001132)	ENSBTAG00000050589	ARHGAP15 (ENSBTAG00000032289)
Hybrid Bos Indicus	MODERN SPECIES	11	GALNT13 (ENSBIXG00005019576)	RPRM (ENSBIXG00005019467) #7	ENSBIXG00005019449	ARL6IP6 (ENSBIXG00005003165) #8	PRPF40A (ENSBIXG00005005862) #9	FMNL2 (ENSBIXG00005019262) #10	STAM2 (ENSBIXG00005019037) #11	CACNB4 (ENSBIXG00005003080) #12	ARL5A (ENSBIXG00005002986) #13	NEB (ENSBIXG00005018305) #14	RIF1 (ENSBIXG00005018091) #15	TNFAIP6 (ENSBIXG00005017934) #16	NMI (ENSBIXG00005017903) #17	RBM43 (ENSBIXG00005017876) #18	RND3 (ENSBIXG00005017847) #20	MMADHC (ENSBIXG00005017782) #22	LYPD6 (ENSBIXG00005017744) #25	LYPD6B (ENSBIXG00005017688) #26	KIF5C (ENSBIXG00005017619) #27	EPC2 (ENSBIXG00005017562) #29	MBD5 (ENSBIXG00005017469) #30	ENSBIXG00005017400	ENSBIXG00005017396	ENSBIXG00005005733	ORC4 (ENSBIXG00005017338) #31	ACVR2A (ENSBIXG00005002803) #32	ENSBIXG00005017172	ENSBIXG00005002793	ZEB2 (ENSBIXG00005017016)	GTDC1 (ENSBIXG00005016592)	ARHGAP15 (ENSBIXG00005016328)
Bos_a	ANCESTRAL SPECIES	4	ENSGT00390000010523.c.b #7	ENSGT00390000007818.e.b.b	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b.l #10	ENSGT00390000018085.a.b.b	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00940000154940.fb.b	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00940000153272.a.b.z.a.a.a.b
Domestic yak	MODERN SPECIES	11	PRPF40A (ENSBGRG00000015929) #9	FMNL2 (ENSBGRG00000015350) #10	STAM2 (ENSBGRG00000015223) #11	CACNB4 (ENSBGRG00000008687) #12	ARL5A (ENSBGRG00000008374) #13	ENSBGRG00000008336	NEB (ENSBGRG00000006143) #14	RIF1 (ENSBGRG00000005974) #15	TNFAIP6 (ENSBGRG00000005909) #16	ENSBGRG00000005896	NMI (ENSBGRG00000005853) #17	ENSBGRG00000005845	RBM43 (ENSBGRG00000005796) #18	FAM98B (ENSBGRG00000005761)	RND3 (ENSBGRG00000005710) #20	MMADHC (ENSBGRG00000005641) #22	LYPD6 (ENSBGRG00000005614) #25	LYPD6B (ENSBGRG00000005574) #26	ENSBGRG00000005565	KIF5C (ENSBGRG00000005336) #27	EPC2 (ENSBGRG00000005242) #29	MBD5 (ENSBGRG00000005195) #30	ENSBGRG00000005171	ORC4 (ENSBGRG00000005070) #31	ACVR2A (ENSBGRG00000004989) #32	ENSBGRG00000004949	ZEB2 (ENSBGRG00000004703)	GTDC1 (ENSBGRG00000004374)	ENSBGRG00000004340	ARHGAP15 (ENSBGRG00000004300)	KYNU (ENSBGRG00000004206)
Wild yak	MODERN SPECIES	696													ENSBMUG00000003839	RND3 (ENSBMUG00000003872) #20	ENSBMUG00000003887	MMADHC (ENSBMUG00000003907) #22	LYPD6 (ENSBMUG00000003931) #25	LYPD6B (ENSBMUG00000003956) #26	ENSBMUG00000003968	KIF5C (ENSBMUG00000004035) #27	EPC2 (ENSBMUG00000004075) #29	MBD5 (ENSBMUG00000004107) #30
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000015050 #22
Common shrew	MODERN SPECIES	4923																MMADHC (ENSSARG00000009986) #22
Hedgehog	MODERN SPECIES	14846																MMADHC (ENSEEUG00000003792) #22
Atlantogenata	ANCESTRAL SPECIES	9	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953
Xenarthra	ANCESTRAL SPECIES	1007																ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29
Sloth	MODERN SPECIES	5619																MMADHC (ENSCHOG00000008067) #22
Armadillo	MODERN SPECIES	1909																MMADHC (ENSDNOG00000035365) #22	LYPD6 (ENSDNOG00000049622) #25	ENSDNOG00000038256	ENSDNOG00000046995	LYPD6B (ENSDNOG00000043417) #26	KIF5C (ENSDNOG00000003867) #27	EPC2 (ENSDNOG00000011439) #29
Afrotheria	ANCESTRAL SPECIES	1	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953
Afrotheria_a	ANCESTRAL SPECIES	1	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953
Elephant	MODERN SPECIES	301	KCNJ3 (ENSLAFG00000022282)	GALNT13 (ENSLAFG00000005947)	RPRM (ENSLAFG00000001386) #7	ARL6IP6 (ENSLAFG00000001616) #8	PRPF40A (ENSLAFG00000001613) #9	FMNL2 (ENSLAFG00000001605) #10	STAM2 (ENSLAFG00000009848) #11	CACNB4 (ENSLAFG00000009844) #12	ARL5A (ENSLAFG00000032104) #13	NEB (ENSLAFG00000009810) #14	RIF1 (ENSLAFG00000009796) #15	TNFAIP6 (ENSLAFG00000009790) #16	NMI (ENSLAFG00000012842) #17	RBM43 (ENSLAFG00000010512) #18	RND3 (ENSLAFG00000010712) #20	MMADHC (ENSLAFG00000016977) #22	LYPD6 (ENSLAFG00000014710) #25	LYPD6B (ENSLAFG00000007340) #26	KIF5C (ENSLAFG00000005632) #27	EPC2 (ENSLAFG00000014312) #29	ENSLAFG00000001900 #30	ENSLAFG00000030020 #30	ORC4 (ENSLAFG00000002631) #31	ACVR2A (ENSLAFG00000002628) #32	ENSLAFG00000032780	ZEB2 (ENSLAFG00000008960)	GTDC1 (ENSLAFG00000010261)	ARHGAP15 (ENSLAFG00000006748)	KYNU (ENSLAFG00000002172)	ENSLAFG00000029177	LRP1B (ENSLAFG00000014282)
Hyrax	MODERN SPECIES	10385																MMADHC (ENSPCAG00000014195) #22
Tenrec	MODERN SPECIES	13686																MMADHC (ENSETEG00000013338) #22
Marsupialia	ANCESTRAL SPECIES	5	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00390000017405.j	ENSGT00940000166136
Marsupialia_b	ANCESTRAL SPECIES	3	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000012235	ENSGT00390000011174	ENSGT00390000016050	ENSGT00940000154956	ENSGT00940000154934.B	ENSGT01050000244827.C.c.a.b	ENSGT00550000075006	ENSGT00670000099436	ENSGT00950000183061.a.a.b	ENSGT00940000157614	ENSGT00940000157257	ENSGT00940000161440	ENSGT00940000161564	ENSGT00390000003602	ENSGT00390000012305.b
Diprotodontia	ANCESTRAL SPECIES	11	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000012235	ENSGT00390000011174	ENSGT00390000016050	ENSGT00940000154956	ENSGT00940000154934.B	ENSGT01050000244827.C.c.a.b	ENSGT00550000075006	ENSGT00670000099436	ENSGT00950000183061.a.a.b	ENSGT00940000157614	ENSGT00940000157257	ENSGT00940000161440	ENSGT00940000161564	ENSGT00390000003602	ENSGT00390000012305.b
Diprotodontia_a	ANCESTRAL SPECIES	9	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000012235	ENSGT00390000011174	ENSGT00390000016050	ENSGT00940000154956	ENSGT00940000154934.B	ENSGT01050000244827.C.c.a.b	ENSGT00550000075006	ENSGT00670000099436	ENSGT00950000183061.a.a.b	ENSGT00940000157614	ENSGT00940000157257	ENSGT00940000161440	ENSGT00940000161564	ENSGT00390000003602	ENSGT00390000012305.b
Common wonbat	MODERN SPECIES	1049								CACNB4 (ENSVURG00010017478) #12	ARL5A (ENSVURG00010019249) #13	NEB (ENSVURG00010019306) #14	RIF1 (ENSVURG00010019510) #15	TNFAIP6 (ENSVURG00010019533) #16	NMI (ENSVURG00010019539) #17	ENSVURG00010019544 #18	RND3 (ENSVURG00010019553) #20	MMADHC (ENSVURG00010019562) #22	SPART (ENSVURG00010019598)	ENSVURG00010019614	ENSVURG00010019621	DCLK1 (ENSVURG00010019643)	ENSVURG00010019677	NBEA (ENSVURG00010019712)	MAB21L1 (ENSVURG00010019759)	ENSVURG00010019764	RFC3 (ENSVURG00010019770)	ENSVURG00010019790	STARD13 (ENSVURG00010019796)	KL (ENSVURG00010019815)	PDS5B (ENSVURG00010019844)	ENSVURG00010019875	ENSVURG00010019878
koala	MODERN SPECIES	203	ENSPCIG00000035350 #7	ARL6IP6 (ENSPCIG00000004934) #8	PRPF40A (ENSPCIG00000004943) #9	FMNL2 (ENSPCIG00000004973) #10	ENSPCIG00000028317	STAM2 (ENSPCIG00000001302) #11	CACNB4 (ENSPCIG00000011289) #12	ARL5A (ENSPCIG00000005040) #13	NEB (ENSPCIG00000005793) #14	RIF1 (ENSPCIG00000009185) #15	TNFAIP6 (ENSPCIG00000009192) #16	ENSPCIG00000020144 #17	ENSPCIG00000020142 #18	RND3 (ENSPCIG00000016721) #20	ENSPCIG00000033780	MMADHC (ENSPCIG00000031048) #22
Tasmanian devil	MODERN SPECIES	2	KCNJ3 (ENSSHAG00000032170)	GALNT13 (ENSSHAG00000031696)	RPRM (ENSSHAG00000025986) #7	ARL6IP6 (ENSSHAG00000028317) #8	PRPF40A (ENSSHAG00000009029) #9	FMNL2 (ENSSHAG00000005004) #10	STAM2 (ENSSHAG00000029280) #11	CACNB4 (ENSSHAG00000026802) #12	NEB (ENSSHAG00000018591) #14	RIF1 (ENSSHAG00000018552) #15	TNFAIP6 (ENSSHAG00000022583) #16	NMI (ENSSHAG00000018439) #17	ENSSHAG00000026547 #18	ENSSHAG00000022458	ENSSHAG00000017174 #20	ENSSHAG00000014382 #22	ENSSHAG00000013973	CCDC169 (ENSSHAG00000013972)	SOHLH2 (ENSSHAG00000013234)	DCLK1 (ENSSHAG00000010588)	NBEA (ENSSHAG00000001274)	MAB21L1 (ENSSHAG00000028852)	RFC3 (ENSSHAG00000012696)	STARD13 (ENSSHAG00000006090)	KL (ENSSHAG00000004604)	ENSSHAG00000030187	PDS5B (ENSSHAG00000012281)	ENSSHAG00000011360	ENSSHAG00000027940	ENSSHAG00000010421	ZAR1L (ENSSHAG00000008288)
Opossum	MODERN SPECIES	3	RPRM (ENSMODG00000044197) #7	ARL6IP6 (ENSMODG00000004186) #8	PRPF40A (ENSMODG00000004179) #9	FMNL2 (ENSMODG00000004138) #10	STAM2 (ENSMODG00000004047) #11	CACNB4 (ENSMODG00000004006) #12	ARL5A (ENSMODG00000003978) #13	ENSMODG00000047668 #14	ENSMODG00000003935 #14	RIF1 (ENSMODG00000003703) #15	TNFAIP6 (ENSMODG00000003606) #16	ENSMODG00000003594 #17	ENSMODG00000003581 #18	RND3 (ENSMODG00000003575) #20	ENSMODG00000043542	MMADHC (ENSMODG00000003566) #22	ENSMODG00000003546	LYPD6 (ENSMODG00000003553) #25	LYPD6B (ENSMODG00000048295) #26	ENSMODG00000039281	KIF5C (ENSMODG00000003526) #27	EPC2 (ENSMODG00000003447) #29	MBD5 (ENSMODG00000003415) #30	ORC4 (ENSMODG00000003327) #31	ACVR2A (ENSMODG00000003295) #32	ENSMODG00000038179	ZEB2 (ENSMODG00000003112)	ENSMODG00000039463	GTDC1 (ENSMODG00000003084)	ARHGAP15 (ENSMODG00000003016)	KYNU (ENSMODG00000002997)
Platypus	MODERN SPECIES	20	GPD2 (ENSOANG00000006122)	NR4A2 (ENSOANG00000006120)	KCNJ3 (ENSOANG00000038534)	GALNT13 (ENSOANG00000006116)	ARL6IP6 (ENSOANG00000044701) #8	PRPF40A (ENSOANG00000006113) #9	FMNL2 (ENSOANG00000006108) #10	STAM2 (ENSOANG00000012041) #11	CACNB4 (ENSOANG00000006106) #12	ARL5A (ENSOANG00000046299) #13	NEB (ENSOANG00000006081) #14	RIF1 (ENSOANG00000006078) #15	TNFAIP6 (ENSOANG00000037517) #16	ENSOANG00000006075 #17	RND3 (ENSOANG00000038274) #20	MMADHC (ENSOANG00000006072) #22	LYPD6 (ENSOANG00000043367) #25	LYPD6B (ENSOANG00000042916) #26	KIF5C (ENSOANG00000011829) #27	EPC2 (ENSOANG00000006066) #29	ENSOANG00000044970 #30	ENSOANG00000040740 #30	ENSOANG00000050510	ORC4 (ENSOANG00000008383) #31	ACVR2A (ENSOANG00000008384) #32	ZEB2 (ENSOANG00000011947)	GTDC1 (ENSOANG00000011982)	ARHGAP15 (ENSOANG00000011983)	KYNU (ENSOANG00000045440)	LRP1B (ENSOANG00000007998)	NXPH2 (ENSOANG00000007997)
Sauria	ANCESTRAL SPECIES		ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT01000000220430	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00960000193288	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862
Archelosauria	ANCESTRAL SPECIES	8	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00960000193288	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00900000141555
Archosauria	ANCESTRAL SPECIES	6	ENSGT00950000183038.a.b.b.b	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00960000193288	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00900000141555
Aves	ANCESTRAL SPECIES	8	ENSGT00950000183038.a.b.b.b	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00960000193288	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00900000141555
Neognathae	ANCESTRAL SPECIES	6	ENSGT00950000183038.a.b.b.b	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00960000193288	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00900000141555
Neognathae_b	ANCESTRAL SPECIES	7	ENSGT00950000183038.a.b.b.b	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166779	ENSGT00960000189410
Passeriformes	ANCESTRAL SPECIES	6	ENSGT01080000257365.b.a.a.b.a.a	ENSGT01080000257365.b.a.a.b.a.b	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166779	ENSGT00960000189410
Great tit	MODERN SPECIES	27	ENSPMJG00000004541	KCNJ3 (ENSPMJG00000004535)	GALNT13 (ENSPMJG00000004522)	ENSPMJG00000004518	PRPF40A (ENSPMJG00000002878) #9	FMNL2 (ENSPMJG00000000755) #10	STAM2 (ENSPMJG00000000177) #11	CACNB4 (ENSPMJG00000000088) #12	ARL5A (ENSPMJG00000000061) #13	NEB (ENSPMJG00000020007) #14	RIF1 (ENSPMJG00000020006) #15	TNFAIP6 (ENSPMJG00000020005) #16	NMI (ENSPMJG00000020004) #17	RBM43 (ENSPMJG00000020003) #18	RND3 (ENSPMJG00000020001) #20	MMADHC (ENSPMJG00000020000) #22	LYPD6 (ENSPMJG00000019999) #25	LYPD6B (ENSPMJG00000019998) #26	KIF5C (ENSPMJG00000019997) #27	EPC2 (ENSPMJG00000019996) #29	MBD5 (ENSPMJG00000019995) #30	ORC4 (ENSPMJG00000019994) #31	ACVR2A (ENSPMJG00000019993) #32	ZEB2 (ENSPMJG00000019972)	GTDC1 (ENSPMJG00000019971)	ARHGAP15 (ENSPMJG00000019970)	KYNU (ENSPMJG00000019969)	ENSPMJG00000019968	LRP1B (ENSPMJG00000019966)	ENSPMJG00000019964	ENSPMJG00000019963
Passeriformes_d	ANCESTRAL SPECIES	8	ENSGT01080000257365.b.a.a.b.a.a	ENSGT01080000257365.b.a.a.b.a.b	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166779	ENSGT00960000189410
Flycatcher	MODERN SPECIES	26	KCNJ3 (ENSFALG00000013952)	GALNT13 (ENSFALG00000013944)	RPRM (ENSFALG00000027840) #7	PRPF40A (ENSFALG00000013930) #9	ENSFALG00000025688	FMNL2 (ENSFALG00000013923) #10	STAM2 (ENSFALG00000013920) #11	CACNB4 (ENSFALG00000013909) #12	ARL5A (ENSFALG00000023620) #13	NEB (ENSFALG00000013894) #14	RIF1 (ENSFALG00000013874) #15	TNFAIP6 (ENSFALG00000013873) #16	NMI (ENSFALG00000013870) #17	RBM43 (ENSFALG00000013867) #18	RND3 (ENSFALG00000013866) #20	MMADHC (ENSFALG00000023718) #22	LYPD6 (ENSFALG00000027300) #25	LYPD6B (ENSFALG00000013863) #26	KIF5C (ENSFALG00000024506) #27	ENSFALG00000028125 #30	ENSFALG00000013858 #30	ORC4 (ENSFALG00000013856) #31	ACVR2A (ENSFALG00000013851) #32	ZEB2 (ENSFALG00000013846)	GTDC1 (ENSFALG00000013845)	ARHGAP15 (ENSFALG00000013843)	KYNU (ENSFALG00000013835)	ENSFALG00000027773	LRP1B (ENSFALG00000013809)	ENSFALG00000027337	ENSFALG00000025359
Passeriformes_g	ANCESTRAL SPECIES	9	ENSGT00950000183038.a.b.b.b	ENSGT01080000257365.b.a.a.b.a.b	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542.h #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166779	ENSGT00960000189410
Passeroidea	ANCESTRAL SPECIES	8	ENSGT00950000183038.a.b.b.b	ENSGT01080000257365.b.a.a.b.a.b	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542.h #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166779	ENSGT00960000189410
Common canary	MODERN SPECIES	8	ENSSCAG00000004822	ENSSCAG00000004826	PRPF40A (ENSSCAG00000004834) #9	FMNL2 (ENSSCAG00000004864) #10	STAM2 (ENSSCAG00000004872) #11	CACNB4 (ENSSCAG00000004889) #12	ARL5A (ENSSCAG00000004911) #13	NEB (ENSSCAG00000005308) #14	RIF1 (ENSSCAG00000007793) #15	TNFAIP6 (ENSSCAG00000008054) #16	NMI (ENSSCAG00000008060) #17	RBM43 (ENSSCAG00000008064) #18	ENSSCAG00000008066	RND3 (ENSSCAG00000008070) #20	ENSSCAG00000008077	MMADHC (ENSSCAG00000008081) #22	LYPD6 (ENSSCAG00000008089) #25	ENSSCAG00000008098	LYPD6B (ENSSCAG00000008103) #26	KIF5C (ENSSCAG00000008117) #27	EPC2 (ENSSCAG00000008145) #29	MBD5 (ENSSCAG00000008168) #30	ORC4 (ENSSCAG00000008247) #31	ACVR2A (ENSSCAG00000008262) #32	ZEB2 (ENSSCAG00000008306)	ENSSCAG00000008312	GTDC1 (ENSSCAG00000008330)	ARHGAP15 (ENSSCAG00000008352)	KYNU (ENSSCAG00000008360)	LRP1B (ENSSCAG00000008544)	ENSSCAG00000009974
Zebra finch	MODERN SPECIES	29	GALNT13 (ENSTGUG00000012138)	RPRM (ENSTGUG00000024849) #7	PRPF40A (ENSTGUG00000012118) #9	FMNL2 (ENSTGUG00000012102) #10	STAM2 (ENSTGUG00000012089) #11	ENSTGUG00000024126	CACNB4 (ENSTGUG00000025861) #12	ARL5A (ENSTGUG00000024176) #13	NEB (ENSTGUG00000012003) #14	TNFAIP6 (ENSTGUG00000012000) #16	NMI (ENSTGUG00000011996) #17	RBM43 (ENSTGUG00000011995) #18	ENSTGUG00000021053	ENSTGUG00000028378	RND3 (ENSTGUG00000011991) #20	MMADHC (ENSTGUG00000011984) #22	ENSTGUG00000028714	LYPD6 (ENSTGUG00000011981) #25	ENSTGUG00000019485	LYPD6B (ENSTGUG00000020162) #26	KIF5C (ENSTGUG00000011950) #27	EPC2 (ENSTGUG00000011944) #29	MBD5 (ENSTGUG00000011939) #30	ENSTGUG00000021808	ORC4 (ENSTGUG00000011929) #31	ACVR2A (ENSTGUG00000011916) #32	ZEB2 (ENSTGUG00000011904)	GTDC1 (ENSTGUG00000011902)	ARHGAP15 (ENSTGUG00000011883)	KYNU (ENSTGUG00000011872)	LRP1B (ENSTGUG00000011849)
Medium ground finch	MODERN SPECIES	1												NMI (ENSGFOG00000005782) #17	RBM43 (ENSGFOG00000005798) #18	RND3 (ENSGFOG00000005858) #20	ENSGFOG00000005861	MMADHC (ENSGFOG00000005864) #22	LYPD6 (ENSGFOG00000005872) #25	LYPD6B (ENSGFOG00000005878) #26	KIF5C (ENSGFOG00000005880) #27	EPC2 (ENSGFOG00000005891) #29	ENSGFOG00000005897	ENSGFOG00000005904 #31	ENSGFOG00000005920 #31	ACVR2A (ENSGFOG00000005925) #32	ZEB2 (ENSGFOG00000000020)	GTDC1 (ENSGFOG00000000024)	ARHGAP15 (ENSGFOG00000000095)	KYNU (ENSGFOG00000000105)	LRP1B (ENSGFOG00000000311)	ENSGFOG00000002046	NXPH2 (ENSGFOG00000002058)
Neognathae_c	ANCESTRAL SPECIES	9	ENSGT00950000183038.a.b.b.b	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166779	ENSGT00960000189410	ENSGT00940000160835
Golden eagle	MODERN SPECIES	22	NR4A2 (ENSACCG00020012439)	KCNJ3 (ENSACCG00020012424)	GALNT13 (ENSACCG00020012390)	RPRM (ENSACCG00020012360) #7	PRPF40A (ENSACCG00020012312) #9	FMNL2 (ENSACCG00020012193) #10	STAM2 (ENSACCG00020012068) #11	CACNB4 (ENSACCG00020012004) #12	ARL5A (ENSACCG00020011953) #13	NEB (ENSACCG00020008753) #14	RIF1 (ENSACCG00020004834) #15	TNFAIP6 (ENSACCG00020004742) #16	NMI (ENSACCG00020004728) #17	RBM43 (ENSACCG00020004722) #18	RND3 (ENSACCG00020004714) #20	MMADHC (ENSACCG00020004705) #22	LYPD6 (ENSACCG00020004700) #25	LYPD6B (ENSACCG00020004692) #26	KIF5C (ENSACCG00020004682) #27	EPC2 (ENSACCG00020004673) #29	MBD5 (ENSACCG00020004667) #30	ORC4 (ENSACCG00020004654) #31	ACVR2A (ENSACCG00020004639) #32	ENSACCG00020004620	ZEB2 (ENSACCG00020004610)	GTDC1 (ENSACCG00020004583)	ARHGAP15 (ENSACCG00020004554)	KYNU (ENSACCG00020004543)	LRP1B (ENSACCG00020003781)	ENSACCG00020002322	ENSACCG00020002307
Kakapo	MODERN SPECIES	22	NR4A2 (ENSSHBG00005012900)	KCNJ3 (ENSSHBG00005012922)	GALNT13 (ENSSHBG00005012937)	RPRM (ENSSHBG00005012981) #7	PRPF40A (ENSSHBG00005013368) #9	FMNL2 (ENSSHBG00005017491) #10	STAM2 (ENSSHBG00005017498) #11	CACNB4 (ENSSHBG00005017507) #12	ARL5A (ENSSHBG00005017513) #13	NEB (ENSSHBG00005017527) #14	RIF1 (ENSSHBG00005017612) #15	TNFAIP6 (ENSSHBG00005017775) #16	NMI (ENSSHBG00005017783) #17	RBM43 (ENSSHBG00005017793) #18	RND3 (ENSSHBG00005017805) #20	MMADHC (ENSSHBG00005017816) #22	LYPD6 (ENSSHBG00005017825) #25	LYPD6B (ENSSHBG00005017884) #26	KIF5C (ENSSHBG00005017894) #27	EPC2 (ENSSHBG00005017902) #29	MBD5 (ENSSHBG00005017919) #30	ORC4 (ENSSHBG00005017938) #31	ACVR2A (ENSSHBG00005017945) #32	ZEB2 (ENSSHBG00005017953)	GTDC1 (ENSSHBG00005017963)	ARHGAP15 (ENSSHBG00005017968)	KYNU (ENSSHBG00005017982)	LRP1B (ENSSHBG00005018190)	ENSSHBG00005019612	ENSSHBG00005019617	ENSSHBG00005019621
Galloanserae	ANCESTRAL SPECIES	7	ENSGT00950000183038.a.b.b.b	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00960000193288	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00900000141555	ENSGT00940000166779
Anatidae	ANCESTRAL SPECIES	37	ENSGT00950000183038.a.b.b.b.f	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d.s #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00960000193288	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166779	ENSGT00940000166136
Pink-footed goose	MODERN SPECIES	25							STAM2 (ENSABRG00000011024) #11	CACNB4 (ENSABRG00000011008) #12	ARL5A (ENSABRG00000010987) #13	ENSABRG00000010176 #14	RIF1 (ENSABRG00000010041) #15	TNFAIP6 (ENSABRG00000010014) #16	ENSABRG00000010005 #17	RBM43 (ENSABRG00000010000) #18	RND3 (ENSABRG00000009986) #20	MMADHC (ENSABRG00000009981) #22	LYPD6 (ENSABRG00000009936) #25	LYPD6B (ENSABRG00000009917) #26	KIF5C (ENSABRG00000008750) #27	EPC2 (ENSABRG00000008493) #29	MBD5 (ENSABRG00000008432) #30	ORC4 (ENSABRG00000008400) #31	ACVR2A (ENSABRG00000008383) #32	ENSABRG00000008258	ZEB2 (ENSABRG00000008234)	GTDC1 (ENSABRG00000008212)	ARHGAP15 (ENSABRG00000008179)	KYNU (ENSABRG00000008161)	LRP1B (ENSABRG00000007918)	ENSABRG00000007871	ENSABRG00000007865
Duck	MODERN SPECIES	25	CXCR4 (ENSAPLG00000001879)	KCNJ3 (ENSAPLG00000011864)	GALNT13 (ENSAPLG00000011024)	PRPF40A (ENSAPLG00000010600) #9	FMNL2 (ENSAPLG00000009989) #10	STAM2 (ENSAPLG00000009755) #11	CACNB4 (ENSAPLG00000009361) #12	ARL5A (ENSAPLG00000022181) #13	ENSAPLG00000007227 #14	ENSAPLG00000029124 #14	ENSAPLG00000021162 #14	RIF1 (ENSAPLG00000007092) #15	TNFAIP6 (ENSAPLG00000006901) #16	ENSAPLG00000006787 #18	RND3 (ENSAPLG00000006777) #20	MMADHC (ENSAPLG00000006746) #22	LYPD6 (ENSAPLG00000006742) #25	LYPD6B (ENSAPLG00000006734) #26	KIF5C (ENSAPLG00000005832) #27	EPC2 (ENSAPLG00000010318) #29	MBD5 (ENSAPLG00000010489) #30	ORC4 (ENSAPLG00000010668) #31	ACVR2A (ENSAPLG00000011198) #32	ZEB2 (ENSAPLG00000007687)	GTDC1 (ENSAPLG00000007900)	ARHGAP15 (ENSAPLG00000008021)	KYNU (ENSAPLG00000008142)	LRP1B (ENSAPLG00000023161)	ENSAPLG00000018223	ENSAPLG00000025771	ENSAPLG00000008881
Phasianidae	ANCESTRAL SPECIES	8	ENSGT00950000183038.a.b.b.b	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a.k	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00900000141555	ENSGT00940000166779	ENSGT00940000166136
Japanese quail	MODERN SPECIES	25	NR4A2 (ENSCJPG00005020500)	KCNJ3 (ENSCJPG00005020503)	GALNT13 (ENSCJPG00005020504)	RPRM (ENSCJPG00005020506) #7	PRPF40A (ENSCJPG00005020508) #9	FMNL2 (ENSCJPG00005020511) #10	STAM2 (ENSCJPG00005020512) #11	CACNB4 (ENSCJPG00005020513) #12	ARL5A (ENSCJPG00005020514) #13	ENSCJPG00005020515 #14	RIF1 (ENSCJPG00005020659) #15	TNFAIP6 (ENSCJPG00005020664) #16	NMI (ENSCJPG00005020666) #17	RBM43 (ENSCJPG00005020668) #18	RND3 (ENSCJPG00005020670) #20	MMADHC (ENSCJPG00005020675) #22	LYPD6 (ENSCJPG00005020681) #25	LYPD6B (ENSCJPG00005020687) #26	KIF5C (ENSCJPG00005020706) #27	EPC2 (ENSCJPG00005020765) #29	MBD5 (ENSCJPG00005020766) #30	ORC4 (ENSCJPG00005020767) #31	ACVR2A (ENSCJPG00005020768) #32	ZEB2 (ENSCJPG00005020782)	GTDC1 (ENSCJPG00005020785)	ARHGAP15 (ENSCJPG00005020786)	UPP2 (ENSCJPG00005020788)	CCDC148 (ENSCJPG00005020789)	PKP4 (ENSCJPG00005020790)	ENSCJPG00005020791	TANC1 (ENSCJPG00005020796)
Phasianidae_b	ANCESTRAL SPECIES	8	ENSGT00950000183038.a.b.b.b	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a.k	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166779	ENSGT00940000166136	ENSGT00950000182883.b.a.a
Chicken	MODERN SPECIES	36	GALNT13 (ENSGALG00010010448)	RPRM (ENSGALG00010011002) #7	PRPF40A (ENSGALG00010010386) #9	FMNL2 (ENSGALG00010010336) #10	STAM2 (ENSGALG00010010287) #11	CACNB4 (ENSGALG00010010255) #12	ARL5A (ENSGALG00010010205) #13	ENSGALG00010010195 #14	ENSGALG00010010115 #14	RIF1 (ENSGALG00010009850) #15	TNFAIP6 (ENSGALG00010009793) #16	NMI (ENSGALG00010009731) #17	RBM43 (ENSGALG00010009690) #18	ENSGALG00010009641	RND3 (ENSGALG00010009638) #20	MMADHC (ENSGALG00010009609) #22	LYPD6 (ENSGALG00010009591) #25	LYPD6B (ENSGALG00010009583) #26	KIF5C (ENSGALG00010009578) #27	EPC2 (ENSGALG00010009555) #29	MBD5 (ENSGALG00010009515) #30	ORC4 (ENSGALG00010009498) #31	ACVR2A (ENSGALG00010009474) #32	ZEB2 (ENSGALG00010009461)	GTDC1 (ENSGALG00010009435)	ARHGAP15 (ENSGALG00010009373)	KYNU (ENSGALG00010009338)	ENSGALG00010009269	ENSGALG00010011353	ENSGALG00010009257	ENSGALG00010009224
Turkey	MODERN SPECIES	27	ENSMGAG00000020828	ENSMGAG00000022989	ENSMGAG00000022357	ENSMGAG00000012615	ENSMGAG00000020185	ENSMGAG00000012624	ENSMGAG00000019606	ENSMGAG00000012628	ENSMGAG00000018373	ENSMGAG00000012670 #31	ENSMGAG00000012656 #32	MBD5 (ENSMGAG00000012693) #30	ENSMGAG00000012689 #29	ENSMGAG00000012694 #27	LYPD6B (ENSMGAG00000012711) #26	ENSMGAG00000012714 #22	ENSMGAG00000012713 #25	RND3 (ENSMGAG00000019988) #20	ENSMGAG00000012721 #18	ENSMGAG00000012727 #16	ENSMGAG00000012732 #15	ENSMGAG00000017715 #14	ENSMGAG00000022891 #14	ENSMGAG00000019364 #14	ENSMGAG00000012743 #14	ENSMGAG00000012782 #14	ENSMGAG00000012795 #13	ENSMGAG00000012799 #12	STAM2 (ENSMGAG00000012813) #11	ENSMGAG00000012843 #9	ENSMGAG00000012826 #10
African ostrich	MODERN SPECIES	319	KCNJ3 (ENSSCUG00000003749)	GALNT13 (ENSSCUG00000003741)	ENSSCUG00000003735	ENSSCUG00000003733	PRPF40A (ENSSCUG00000003728) #9	FMNL2 (ENSSCUG00000003723) #10	STAM2 (ENSSCUG00000003717) #11	CACNB4 (ENSSCUG00000003713) #12	ARL5A (ENSSCUG00000003706) #13	NEB (ENSSCUG00000003691) #14	RIF1 (ENSSCUG00000003638) #15	TNFAIP6 (ENSSCUG00000003603) #16	NMI (ENSSCUG00000003597) #17	RBM43 (ENSSCUG00000003594) #18	RND3 (ENSSCUG00000003588) #20	MMADHC (ENSSCUG00000003584) #22	LYPD6 (ENSSCUG00000003581) #25	LYPD6B (ENSSCUG00000003580) #26	KIF5C (ENSSCUG00000003575) #27	EPC2 (ENSSCUG00000003574) #29	MBD5 (ENSSCUG00000003568) #30
Australian saltwater crocodile	MODERN SPECIES	66	KCNJ3 (ENSCPRG00005008883)	GALNT13 (ENSCPRG00005008830)	ARL6IP6 (ENSCPRG00005008806) #8	PRPF40A (ENSCPRG00005008786) #9	FMNL2 (ENSCPRG00005008762) #10	STAM2 (ENSCPRG00005008747) #11	CACNB4 (ENSCPRG00005008584) #12	ARL5A (ENSCPRG00005008551) #13	ENSCPRG00005008539 #14	ENSCPRG00005008458 #14	RIF1 (ENSCPRG00005008380) #15	TNFAIP6 (ENSCPRG00005008363) #16	NMI (ENSCPRG00005008353) #17	RBM43 (ENSCPRG00005008350) #18	RND3 (ENSCPRG00005008330) #20	MMADHC (ENSCPRG00005008285) #22	LYPD6 (ENSCPRG00005008268) #25	LYPD6B (ENSCPRG00005008266) #26	KIF5C (ENSCPRG00005007708) #27	EPC2 (ENSCPRG00005007668) #29	MBD5 (ENSCPRG00005007665) #30	ORC4 (ENSCPRG00005007654) #31	ACVR2A (ENSCPRG00005007643) #32	ENSCPRG00005007629	ZEB2 (ENSCPRG00005007598)	GTDC1 (ENSCPRG00005007582)	ENSCPRG00005007562	ARHGAP15 (ENSCPRG00005007510)	ENSCPRG00005007469	KYNU (ENSCPRG00005007454)	LRP1B (ENSCPRG00005005815)
Cryptodira	ANCESTRAL SPECIES	5	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166779	ENSGT00940000166136	ENSGT00950000182883.b.a.a
Testudinoidea	ANCESTRAL SPECIES	11	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542.j #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166779	ENSGT00940000166136	ENSGT00950000182883.b.a.a
Emydidae	ANCESTRAL SPECIES	4	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542.j #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166779	ENSGT00940000166136	ENSGT00950000182883.b.a.a
Three-toed box turtle	MODERN SPECIES	25	NR4A2 (ENSTMTG00000022554)	KCNJ3 (ENSTMTG00000022553)	GALNT13 (ENSTMTG00000022547)	RPRM (ENSTMTG00000022542) #7	ARL6IP6 (ENSTMTG00000022540) #8	PRPF40A (ENSTMTG00000022533) #9	FMNL2 (ENSTMTG00000022518) #10	STAM2 (ENSTMTG00000022506) #11	CACNB4 (ENSTMTG00000022421) #12	ARL5A (ENSTMTG00000022372) #13	NEB (ENSTMTG00000016118) #14	RIF1 (ENSTMTG00000013981) #15	NMI (ENSTMTG00000013868) #17	RBM43 (ENSTMTG00000013865) #18	RND3 (ENSTMTG00000013856) #20	MMADHC (ENSTMTG00000013842) #22	LYPD6 (ENSTMTG00000013835) #25	LYPD6B (ENSTMTG00000013809) #26	KIF5C (ENSTMTG00000013757) #27	EPC2 (ENSTMTG00000013718) #29	MBD5 (ENSTMTG00000013709) #30	ORC4 (ENSTMTG00000013683) #31	ACVR2A (ENSTMTG00000013661) #32	ENSTMTG00000013650	ZEB2 (ENSTMTG00000013632)	GTDC1 (ENSTMTG00000013582)	ARHGAP15 (ENSTMTG00000013531)	KYNU (ENSTMTG00000013497)	LRP1B (ENSTMTG00000013281)	ENSTMTG00000013165	ENSTMTG00000013143
painted turtle	MODERN SPECIES	766			RPRM (ENSCPBG00000000230) #7	ARL6IP6 (ENSCPBG00000000213) #8	PRPF40A (ENSCPBG00000000174) #9	FMNL2 (ENSCPBG00000026424) #10	STAM2 (ENSCPBG00000026351) #11	CACNB4 (ENSCPBG00000026340) #12	ARL5A (ENSCPBG00000026331) #13	NEB (ENSCPBG00000026030) #14	RIF1 (ENSCPBG00000025885) #15	TNFAIP6 (ENSCPBG00000025850) #16	NMI (ENSCPBG00000025846) #17	RBM43 (ENSCPBG00000025841) #18	RND3 (ENSCPBG00000025828) #20	MMADHC (ENSCPBG00000025822) #22	LYPD6 (ENSCPBG00000025812) #25	LYPD6B (ENSCPBG00000025808) #26	KIF5C (ENSCPBG00000025802) #27	EPC2 (ENSCPBG00000025795) #29	MBD5 (ENSCPBG00000025788) #30	ORC4 (ENSCPBG00000025785) #31	ACVR2A (ENSCPBG00000025780) #32	ENSCPBG00000025775	ENSCPBG00000025774
Testudinidae	ANCESTRAL SPECIES	8	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542.j #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00390000006631.g	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166779	ENSGT00940000166136	ENSGT00950000182883.b.a.a
Goode s thornscrub tortoise	MODERN SPECIES	2	GALNT13 (ENSGEVG00005019923)	RPRM (ENSGEVG00005019943) #7	ARL6IP6 (ENSGEVG00005019950) #8	PRPF40A (ENSGEVG00005019971) #9	FMNL2 (ENSGEVG00005020309) #10	STAM2 (ENSGEVG00005020687) #11	CACNB4 (ENSGEVG00005020734) #12	ARL5A (ENSGEVG00005020782) #13	NEB (ENSGEVG00005020817) #14	RIF1 (ENSGEVG00005020864) #15	TNFAIP6 (ENSGEVG00005020884) #16	NMI (ENSGEVG00005020889) #17	RBM43 (ENSGEVG00005020902) #18	RND3 (ENSGEVG00005020917) #20	ENSGEVG00005020925	MMADHC (ENSGEVG00005020928) #22	LYPD6 (ENSGEVG00005020933) #25	LYPD6B (ENSGEVG00005020935) #26	KIF5C (ENSGEVG00005020950) #27	EPC2 (ENSGEVG00005020958) #29	MBD5 (ENSGEVG00005020959) #30	ORC4 (ENSGEVG00005020967) #31	ACVR2A (ENSGEVG00005020977) #32	ZEB2 (ENSGEVG00005020983)	GTDC1 (ENSGEVG00005020989)	ARHGAP15 (ENSGEVG00005020993)	KYNU (ENSGEVG00005021006)	LRP1B (ENSGEVG00005021016)	ENSGEVG00005021033	ENSGEVG00005021039	ENSGEVG00005021042
Abingdon island giant tortoise	MODERN SPECIES	2716																MMADHC (ENSCABG00000014868) #22	LYPD6 (ENSCABG00000014872) #25	LYPD6B (ENSCABG00000014887) #26	KIF5C (ENSCABG00000014889) #27
Chinese turtle	MODERN SPECIES	1244	RPRM (ENSPSIG00000001821) #7	ENSPSIG00000007594	PRPF40A (ENSPSIG00000007197) #9	FMNL2 (ENSPSIG00000006880) #10	STAM2 (ENSPSIG00000017391) #11	CACNB4 (ENSPSIG00000016120) #12	ENSPSIG00000016101	ARL5A (ENSPSIG00000016095) #13	NEB (ENSPSIG00000012844) #14	RIF1 (ENSPSIG00000012517) #15	TNFAIP6 (ENSPSIG00000011601) #16	NMI (ENSPSIG00000011462) #17	RBM43 (ENSPSIG00000011378) #18	ENSPSIG00000001819	RND3 (ENSPSIG00000010783) #20	MMADHC (ENSPSIG00000009795) #22	LYPD6 (ENSPSIG00000009279) #25	LYPD6B (ENSPSIG00000009271) #26	GPR20 (ENSPSIG00000001817)	ENSPSIG00000008605	PTP4A3 (ENSPSIG00000008204)	ENSPSIG00000001814
Lepidosauria	ANCESTRAL SPECIES	7	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT01000000220430	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00390000006631.j	ENSGT00950000182860.a.b.b	ENSGT00940000181338	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b
Episquamata	ANCESTRAL SPECIES		ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00390000006631.j	ENSGT00950000182860.a.b.b	ENSGT00940000181338	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166779	ENSGT00940000166136
Laterata	ANCESTRAL SPECIES	2	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00390000006631.j	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166779	ENSGT00940000166136	ENSGT00950000182883.b.a.a
Common wall lizard	MODERN SPECIES		ARL6IP6 (ENSPMRG00000008504) #8	PRPF40A (ENSPMRG00000007825) #9	FMNL2 (ENSPMRG00000007265) #10	STAM2 (ENSPMRG00000007098) #11	CACNB4 (ENSPMRG00000007056) #12	ARL5A (ENSPMRG00000007032) #13	NEB (ENSPMRG00000002804) #14	RIF1 (ENSPMRG00000001812) #15	TNFAIP6 (ENSPMRG00000001751) #16	NMI (ENSPMRG00000001742) #17	RBM43 (ENSPMRG00000001735) #18	RND3 (ENSPMRG00000001723) #20	ENSPMRG00000001719	ENSPMRG00000001715	ENSPMRG00000001698	MMADHC (ENSPMRG00000001693) #22	LYPD6 (ENSPMRG00000001684) #25	LYPD6B (ENSPMRG00000001678) #26	ENSPMRG00000001673	KIF5C (ENSPMRG00000000646) #27	EPC2 (ENSPMRG00000000137) #29	MBD5 (ENSPMRG00000000124) #30	ORC4 (ENSPMRG00000000110) #31	ACVR2A (ENSPMRG00000000096) #32	ENSPMRG00000007491	ZEB2 (ENSPMRG00000007466)	GTDC1 (ENSPMRG00000007431)	ARHGAP15 (ENSPMRG00000007392)	ENSPMRG00000007371	ENSPMRG00000007325	ENSPMRG00000007298
Argentine black and white tegu	MODERN SPECIES	20	ENSSMRG00000023303	ENSSMRG00000023304	RPRM (ENSSMRG00000023307) #7	ARL6IP6 (ENSSMRG00000023309) #8	PRPF40A (ENSSMRG00000023310) #9	FMNL2 (ENSSMRG00000023312) #10	STAM2 (ENSSMRG00000023314) #11	CACNB4 (ENSSMRG00000023315) #12	ARL5A (ENSSMRG00000023317) #13	NEB (ENSSMRG00000023318) #14	RIF1 (ENSSMRG00000023454) #15	TNFAIP6 (ENSSMRG00000023455) #16	ENSSMRG00000023456 #17	RBM43 (ENSSMRG00000023457) #18	RND3 (ENSSMRG00000023459) #20	MMADHC (ENSSMRG00000023460) #22	LYPD6 (ENSSMRG00000023461) #25	LYPD6B (ENSSMRG00000023462) #26	ENSSMRG00000023463	KIF5C (ENSSMRG00000023464) #27	EPC2 (ENSSMRG00000023465) #29	MBD5 (ENSSMRG00000023466) #30	ORC4 (ENSSMRG00000023467) #31	ACVR2A (ENSSMRG00000023468) #32	ZEB2 (ENSSMRG00000023477)	GTDC1 (ENSSMRG00000023478)	ARHGAP15 (ENSSMRG00000023481)	KYNU (ENSSMRG00000023482)	LRP1B (ENSSMRG00000023483)	ENSSMRG00000023485	ENSSMRG00000023486
Toxicofera	ANCESTRAL SPECIES	10	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d.q #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00530000063686.a.b #18	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00390000006631.j	ENSGT00950000182860.a.b.b	ENSGT00940000181338	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166779	ENSGT00940000160835
Elapidae	ANCESTRAL SPECIES		ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904.t	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b.g #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d.q #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00940000157541 #20	ENSGT00940000164219.a.a.a.c.b	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a.h	ENSGT00390000006631.j	ENSGT00950000182860.a.b.b	ENSGT00940000181338	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166779	ENSGT00940000160835
Elapidae_a	ANCESTRAL SPECIES	5	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904.t	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b.g #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d.q #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00940000157541 #20	ENSGT00940000164219.a.a.a.c.b	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542.f #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a.h	ENSGT00390000006631.j	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166779	ENSGT00940000160835	ENSGT00940000166136
Acanthophiinae	ANCESTRAL SPECIES	7	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904.t	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b.g #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d.q #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00530000063686.a.a #17	ENSGT00940000157541 #20	ENSGT00940000164219.a.a.a.c.b	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542.f #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a.h	ENSGT00390000006631.j	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166779	ENSGT00940000160835	ENSGT00940000166136
Mainland tiger snake	DUPLICATION
Mainland tiger snake	MODERN SPECIES	124	ARL6IP6 (ENSNSUG00000007422) #8	ENSNSUG00000007421	ENSNSUG00000007412 #10	ENSNSUG00000007393 #11	ENSNSUG00000007040 #12	ENSNSUG00000007038 #13	ENSNSUG00000007037 #14	ENSNSUG00000007030 #14	ENSNSUG00000007012 #15	ENSNSUG00000007000 #16	ENSNSUG00000006997 #17	ENSNSUG00000006996	ENSNSUG00000006995 #20	ENSNSUG00000006993	ENSNSUG00000006991	ENSNSUG00000006990 #22	ENSNSUG00000006987 #25
Mainland tiger snake	MODERN SPECIES	125	ENSNSUG00000008519	ENSNSUG00000008496	ENSNSUG00000008495 #7	ENSNSUG00000008494	PRPF40A (ENSNSUG00000008493) #9	ENSNSUG00000008491 #10	ENSNSUG00000008487 #11	ENSNSUG00000007603 #12	ENSNSUG00000007601 #13	ENSNSUG00000007578 #14	ENSNSUG00000007567 #15	ENSNSUG00000007562 #16	ENSNSUG00000007557 #17	ENSNSUG00000007556 #20	ENSNSUG00000007555	ENSNSUG00000007554 #22	ENSNSUG00000007548 #25
Eastern brown snake	MODERN SPECIES	7	ENSPTXG00000006716	GALNT13 (ENSPTXG00000006717)	RPRM (ENSPTXG00000006718) #7	ARL6IP6 (ENSPTXG00000006719) #8	PRPF40A (ENSPTXG00000006720) #9	FMNL2 (ENSPTXG00000006737) #10	STAM2 (ENSPTXG00000009936) #11	CACNB4 (ENSPTXG00000009947) #12	ARL5A (ENSPTXG00000012173) #13	NEB (ENSPTXG00000012187) #14	RIF1 (ENSPTXG00000012982) #15	TNFAIP6 (ENSPTXG00000012986) #16	NMI (ENSPTXG00000012988) #17	RND3 (ENSPTXG00000012993) #20	ENSPTXG00000012996	MMADHC (ENSPTXG00000012998) #22	LYPD6 (ENSPTXG00000013003) #25	LYPD6B (ENSPTXG00000013021) #26	KIF5C (ENSPTXG00000013024) #27	EPC2 (ENSPTXG00000013031) #29	MBD5 (ENSPTXG00000013034) #30	ORC4 (ENSPTXG00000013039) #31	ACVR2A (ENSPTXG00000013042) #32	ENSPTXG00000013045
Blue-lipped sea krait	MODERN SPECIES	3453																MMADHC (ENSLLTG00000017108) #22	LYPD6 (ENSLLTG00000017110) #25
Indian cobra	MODERN SPECIES		GALNT13 (ENSNNAG00000018312)	ENSNNAG00000018322 #7	ENSNNAG00000018324 #7	ENSNNAG00000018325	ENSNNAG00000018328	ARL6IP6 (ENSNNAG00000018331) #8	FMNL2 (ENSNNAG00000018336) #10	STAM2 (ENSNNAG00000018344) #11	CACNB4 (ENSNNAG00000018360) #12	ARL5A (ENSNNAG00000018385) #13	NEB (ENSNNAG00000018647) #14	TNFAIP6 (ENSNNAG00000019067) #16	NMI (ENSNNAG00000019069) #17	RND3 (ENSNNAG00000019074) #20	ENSNNAG00000019076	MMADHC (ENSNNAG00000019078) #22	LYPD6 (ENSNNAG00000006713) #25	LYPD6B (ENSNNAG00000006750) #26	ENSNNAG00000006910	KIF5C (ENSNNAG00000007202) #27	EPC2 (ENSNNAG00000012958) #29	MBD5 (ENSNNAG00000013008) #30	ORC4 (ENSNNAG00000013093) #31	ACVR2A (ENSNNAG00000013129) #32	ZEB2 (ENSNNAG00000013202)	ENSNNAG00000013247	GTDC1 (ENSNNAG00000013283)	ARHGAP15 (ENSNNAG00000013349)	ENSNNAG00000013365	KYNU (ENSNNAG00000013382)	LRP1B (ENSNNAG00000013416)
Lizard	MODERN SPECIES	916								NEB (ENSACAG00000003769) #14	RIF1 (ENSACAG00000003714) #15	TNFAIP6 (ENSACAG00000003674) #16	ENSACAG00000029399	NMI (ENSACAG00000003644) #17	RBM43 (ENSACAG00000003642) #18	ENSACAG00000037908	RND3 (ENSACAG00000043937) #20	MMADHC (ENSACAG00000003571) #22	LYPD6 (ENSACAG00000003558) #25	LYPD6B (ENSACAG00000003555) #26
tuatara	MODERN SPECIES	1586																MMADHC (ENSSPUG00000002094) #22	LYPD6 (ENSSPUG00000002065) #25	LYPD6B (ENSSPUG00000002044) #26	KIF5C (ENSSPUG00000001989) #27	EPC2 (ENSSPUG00000001980) #29	MBD5 (ENSSPUG00000001943) #30	ENSSPUG00000001933	ENSSPUG00000001902 #31	ENSSPUG00000001892 #31	ACVR2A (ENSSPUG00000001883) #32
Anura	ANCESTRAL SPECIES	7	ENSGT01080000257365.b.a.a.b.a	ENSGT00940000158904	ENSGT00390000010523.c.b #7	ENSGT00390000009987 #8	ENSGT00930000150980.a #9	ENSGT00940000155515.a.b.b #10	ENSGT00940000157055 #11	ENSGT00950000182837.b.b #12	ENSGT00940000154714 #13	ENSGT00940000154533.b.d #14	ENSGT00390000012204 #15	ENSGT00940000157201 #16	ENSGT00940000154311.a.b.o.a	ENSGT00530000063686.a.a #17	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862
Frog	MODERN SPECIES	9	arl6ip6 (ENSXETG00000029993) #8	prpf40a (ENSXETG00000021713) #9	fmnl2 (ENSXETG00000021703) #10	stam2 (ENSXETG00000021702) #11	cacnb4 (ENSXETG00000021694) #12	arl5a (ENSXETG00000021692) #13	kcne3 (ENSXETG00000004531) #14	nr5a1 (ENSXETG00000004530) #15	tnfaip6 (ENSXETG00000004529) #16	ENSXETG00000049120	ENSXETG00000042237	ENSXETG00000004526	ENSXETG00000031130	nmi (ENSXETG00000004525) #17	rnd3 (ENSXETG00000047421) #20	mmadhc (ENSXETG00000004524) #22	lypd6 (ENSXETG00000004522) #25	lypd6b (ENSXETG00000030529) #26	kif5c (ENSXETG00000004486) #27	epc2 (ENSXETG00000024611) #29	mbd5 (ENSXETG00000018214) #30	orc4 (ENSXETG00000021718) #31	acvr2a (ENSXETG00000021720) #32	ENSXETG00000048550	ENSXETG00000047564	zeb2 (ENSXETG00000000237)	gtdc1 (ENSXETG00000000254)	arhgap15 (ENSXETG00000037989)	kynu (ENSXETG00000032399)	ENSXETG00000039635	ENSXETG00000040881
Leishan spiny toad	MODERN SPECIES	10	PRPF40A (ENSLLEG00000016291) #9	FMNL2 (ENSLLEG00000015047) #10	STAM2 (ENSLLEG00000014859) #11	CACNB4 (ENSLLEG00000014323) #12	ARL5A (ENSLLEG00000014229) #13	NEB (ENSLLEG00000012979) #14	RIF1 (ENSLLEG00000012492) #15	TNFAIP6 (ENSLLEG00000012409) #16	ENSLLEG00000012309	ENSLLEG00000012246	ENSLLEG00000011911	ENSLLEG00000011678 #17	ENSLLEG00000011640	RND3 (ENSLLEG00000011580) #20	ENSLLEG00000011561	MMADHC (ENSLLEG00000011447) #22	LYPD6 (ENSLLEG00000011401) #25	LYPD6B (ENSLLEG00000011339) #26	KIF5C (ENSLLEG00000010575) #27	EPC2 (ENSLLEG00000010232) #29	MBD5 (ENSLLEG00000010115) #30	ORC4 (ENSLLEG00000009923) #31	ACVR2A (ENSLLEG00000009386) #32	ENSLLEG00000009324	ENSLLEG00000009305	ZEB2 (ENSLLEG00000009045)	GTDC1 (ENSLLEG00000008844)	ENSLLEG00000008819	ENSLLEG00000008799	ARHGAP15 (ENSLLEG00000008547)	KYNU (ENSLLEG00000008448)
Coelacanth	MODERN SPECIES	1183																MMADHC (ENSLACG00000010834) #22	LYPD6 (ENSLACG00000008705) #25	LYPD6B (ENSLACG00000022393) #26	KIF5C (ENSLACG00000003891) #27	EPC2 (ENSLACG00000001222) #29
Actinopterygii	ANCESTRAL SPECIES					ENSGT00940000153470.a.a.a.a	ENSGT00390000001170	ENSGT00490000043417	ENSGT00940000155759	ENSGT00940000160383	ENSGT00390000006705	ENSGT00940000158559	ENSGT00940000156095	ENSGT00940000160205	ENSGT00940000165390	ENSGT00530000063686.a.a #17	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.a.a	ENSGT00940000181625	ENSGT00940000157521.b
Reedfish	MODERN SPECIES	16	mgat5 (ENSECRG00000006366)	tmem163a (ENSECRG00000006356)	acmsd (ENSECRG00000006341)	ccnt2a (ENSECRG00000006331)	CCNT2 (ENSECRG00000006315)	ENSECRG00000006308	rab3gap1 (ENSECRG00000010452)	ZRANB3 (ENSECRG00000010412)	ENSECRG00000010395	R3HDM1 (ENSECRG00000010368)	UBXN4 (ENSECRG00000010348)	ENSECRG00000010333	NMI (ENSECRG00000010319) #17	rnd3b (ENSECRG00000010309) #20	ENSECRG00000010302	mmadhca (ENSECRG00000010291) #22	lypd6 (ENSECRG00000010280) #25	lypd6b (ENSECRG00000010269) #26	KIF5C (ENSECRG00000010243) #27	epc2 (ENSECRG00000010226) #29	MBD5 (ENSECRG00000010210) #30	orc4 (ENSECRG00000010192) #31	acvr2aa (ENSECRG00000010157) #32	ENSECRG00000010123	zeb2b (ENSECRG00000010088)	gtdc1 (ENSECRG00000010049)	ENSECRG00000010038	arhgap15 (ENSECRG00000010022)	KYNU (ENSECRG00000009999)	ENSECRG00000009992	ENSECRG00000009987
Neopterygii	ANCESTRAL SPECIES	1	ENSGT00940000156353	ENSGT00940000159094	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170	ENSGT00490000043417	ENSGT00940000155759	ENSGT00940000160383	ENSGT00390000006705	ENSGT00940000158559	ENSGT00940000156095	ENSGT00940000160205	ENSGT00940000165390	ENSGT00530000063686.a.a #17	ENSGT01100000263596	ENSGT00940000157541 #20	ENSGT00390000015050 #22	ENSGT00390000000220.B #25	ENSGT00390000000220.A #26	ENSGT00940000158539 #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.a.a	ENSGT00940000157521.b	ENSGT00940000167103
Spotted gar	MODERN SPECIES	650	MRAS (ENSLOCG00000001886)	pth2ra (ENSLOCG00000001855)	mgat5 (ENSLOCG00000001826)	tmem163a (ENSLOCG00000001812)	acmsd (ENSLOCG00000001787)	ccnt2a (ENSLOCG00000001764)	ENSLOCG00000001750	rab3gap1 (ENSLOCG00000001701)	ZRANB3 (ENSLOCG00000001673)	R3HDM1 (ENSLOCG00000001641)	UBXN4 (ENSLOCG00000001630)	ENSLOCG00000001612	NMI (ENSLOCG00000001598) #17	ENSLOCG00000001583	rnd3b (ENSLOCG00000001573) #20	mmadhca (ENSLOCG00000001561) #22	lypd6 (ENSLOCG00000001546) #25	lypd6b (ENSLOCG00000001536) #26	KIF5C (ENSLOCG00000001468) #27	epc2 (ENSLOCG00000001437) #29	MBD5 (ENSLOCG00000001417) #30	orc4 (ENSLOCG00000001369) #31	acvr2aa (ENSLOCG00000001336) #32	zeb2b (ENSLOCG00000001301)	gtdc1 (ENSLOCG00000001286)	arhgap15 (ENSLOCG00000001273)	KYNU (ENSLOCG00000001250)	ENSLOCG00000017825	LRP1B (ENSLOCG00000001123)	ENSLOCG00000001087	ENSLOCG00000001058
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	18	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00390000001170.a.a	ENSGT00490000043417	ENSGT00940000155759	ENSGT00940000160383	ENSGT00390000006705	ENSGT00940000158559	ENSGT00940000156095	ENSGT00940000160205	ENSGT00940000165390.a	ENSGT00530000063686.a.a #17	ENSGT00940000157541.f #20	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.a #22	ENSGT00390000000220.B.c.a #25	ENSGT00940000158539.b #27	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00390000000220.B.c.b #25	ENSGT00390000000220.A #26	ENSGT00940000158539.a #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b
Osteoglossiformes	ANCESTRAL SPECIES	345																ENSGT00390000015050.`b.a #22	ENSGT00390000000220.B.d #25	ENSGT00390000000220.A #26	ENSGT00940000158539.a.k #27	ENSGT00530000064137.a.b.d #30	ENSGT00390000016542 #31	ENSGT00940000157233.a #32	ENSGT00950000183208.A.c.a.t	ENSGT00940000167103	ENSGT00940000166136	ENSGT00390000012561.b.nb	ENSGT00950000183114.a.b.b	ENSGT00940000160639.b.b	ENSGT00390000013151.a.a.a.f
Asian bonytongue	MODERN SPECIES	3	GLI2 (ENSSFOG00015020575)	tfcp2l1 (ENSSFOG00015020550)	CLASP1 (ENSSFOG00015020434)	ENSSFOG00015020408	ENSSFOG00015020357	MRAS (ENSSFOG00015032537)	pth2ra (ENSSFOG00015020293)	mgat5 (ENSSFOG00015026297)	TMEM163 (ENSSFOG00015020195)	CCNT2 (ENSSFOG00015020175)	ENSSFOG00015020163	ENSSFOG00015019851	ENSSFOG00015030318	ENSSFOG00015019700 #17	rnd3a (ENSSFOG00015028705) #20	mmadhcb (ENSSFOG00015019602) #22	ENSSFOG00015026236 #25	lypd6b (ENSSFOG00015024714) #26	KIF5C (ENSSFOG00015019517) #27	EPC2 (ENSSFOG00015019449) #29	MBD5 (ENSSFOG00015019421) #30	orc4 (ENSSFOG00015019383) #31	ACVR2A (ENSSFOG00015026082) #32	zeb2b (ENSSFOG00015019297)	ENSSFOG00015019155	ENSSFOG00015019073	ENSSFOG00015030562	bzw1a (ENSSFOG00015019024)	aox5 (ENSSFOG00015018805)	ADPRH (ENSSFOG00015018749)	ENSSFOG00015018683
P. kingsleyae	MODERN SPECIES	192		ENSPKIG00000005083	ENSPKIG00000005070	ENSPKIG00000004986	PTPN4 (ENSPKIG00000004861)	MRAS (ENSPKIG00000004834)	ENSPKIG00000004802	mgat5 (ENSPKIG00000004746)	TMEM163 (ENSPKIG00000004686)	CCNT2 (ENSPKIG00000004631)	ENSPKIG00000004594	ENSPKIG00000004579	R3HDM1 (ENSPKIG00000004328)	ENSPKIG00000004064	rnd3a (ENSPKIG00000003968) #20	mmadhcb (ENSPKIG00000003948) #22	ENSPKIG00000003918 #25	lypd6b (ENSPKIG00000003883) #26	KIF5C (ENSPKIG00000003824) #27	EPC2 (ENSPKIG00000003738) #29	ENSPKIG00000003700 #30	MBD5 (ENSPKIG00000003673) #30	orc4 (ENSPKIG00000003619) #31	ACVR2A (ENSPKIG00000003523) #32	zeb2b (ENSPKIG00000003462)
Clupeocephala	ANCESTRAL SPECIES	110	ENSGT00940000157211.k	ENSGT00940000156353.u.b	ENSGT00940000159094.e	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000158539.b #27	ENSGT00390000000220.B.c.a #25	ENSGT00940000157541.f #20	ENSGT00390000015050.`b.a #22	ENSGT00390000000220.B.c.b #25	ENSGT00390000000220.A #26	ENSGT00940000158539.a #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233.c #32	ENSGT00950000183208.A.c.a	ENSGT00390000008033	ENSGT00940000157521.a.b	ENSGT00940000167103	ENSGT00940000166136	ENSGT00390000012561.b.pb.b	ENSGT00950000183114.a.b.b	ENSGT00940000160639.b.a.b.b.a
Euteleosteomorpha	ANCESTRAL SPECIES	29	ENSGT00940000156353.u.a	ENSGT00940000159094.f	ENSGT00390000001170.a.a	ENSGT00490000043417	ENSGT00940000155759.e.a	ENSGT00940000160383	ENSGT01030000234607.A.a.a.a.d	ENSGT00390000006705	ENSGT00940000156095.m.b	ENSGT00940000160205	ENSGT00940000165390.a	ENSGT00940000154311.b	ENSGT00530000063686.a.a #17	ENSGT00940000157541.f.c #20	ENSGT00940000157541.f.d #20	ENSGT00390000015050.`b.a #22	ENSGT00390000000220.B.c.b #25	ENSGT00390000000220.A #26	ENSGT00940000158539.a #27	ENSGT00940000158526 #29	ENSGT00940000157233.d #32	ENSGT00950000183208.A.c.b	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00940000181338	ENSGT00940000160639.b.a.b.a	ENSGT00390000013151.a.a.b	ENSGT00940000160532.h	ENSGT00510000049102	ENSGT00390000016151	ENSGT00940000154486.b.a.a.b.e.a.a.a
Acanthomorphata	ANCESTRAL SPECIES	51								ENSGT00390000006705	ENSGT00940000156095.m.b	ENSGT00940000160205	ENSGT00940000165390.a	ENSGT00940000154311.b	ENSGT00530000063686.a.a #17	ENSGT00940000157541.f.c #20	ENSGT00940000157541.f.d #20	ENSGT00390000015050.`b.a #22	ENSGT00390000000220.B.c.b #25	ENSGT00390000000220.A #26	ENSGT00940000158539.a #27	ENSGT00940000158526 #29	ENSGT00940000157233.d #32	ENSGT00950000183208.A.c.b	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00940000181338	ENSGT00940000160639.b.a.b.a	ENSGT00390000013151.a.a.b	ENSGT00940000160532.h	ENSGT00510000049102	ENSGT00390000016151	ENSGT00940000154486.b.a.a.b.e.a.a.a
Euacanthomorphacea	ANCESTRAL SPECIES	113									ENSGT00390000006705	ENSGT00940000156095.m.b	ENSGT00940000160205	ENSGT00940000165390.a	ENSGT00530000063686.a.a #17	ENSGT00940000157541.f.c #20	ENSGT00940000157541.f.d #20	ENSGT00390000015050.`b.a #22	ENSGT00390000000220.B.c.b #25	ENSGT00390000000220.A #26	ENSGT00940000158539.a #27	ENSGT00940000158526 #29	ENSGT00940000157233.d #32	ENSGT00950000183208.A.c.b	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00940000181338
Percomorphaceae	ANCESTRAL SPECIES	206															ENSGT00940000157541.f.d #20	ENSGT00390000015050.`b.a #22	ENSGT00390000000220.B.c.b #25
Tiger tail seahorse	MODERN SPECIES	246	ENSHCOG00000020053	ENSHCOG00000020042	kazald3 (ENSHCOG00000019971)	pomt1 (ENSHCOG00000019951)	ENSHCOG00000019901	prkag3b (ENSHCOG00000019881)	ENSHCOG00000019811	ENSHCOG00000019801	ENSHCOG00000019773	ENSHCOG00000019753	KALRN (ENSHCOG00000019714)	gjb8 (ENSHCOG00000019616)	ahr1b (ENSHCOG00000019572)	ENSHCOG00000018388	ENSHCOG00000018370	mmadhcb (ENSHCOG00000018364) #22	ENSHCOG00000018350	ENSHCOG00000018343	rab3gap1 (ENSHCOG00000018326)	ENSHCOG00000018249	pknox1.1 (ENSHCOG00000018237)	TMPRSS3 (ENSHCOG00000018206)	wdr4 (ENSHCOG00000018175)	ENSHCOG00000018101	ENSHCOG00000018093	ENSHCOG00000018087	ENSHCOG00000018074	ENSHCOG00000018065	arglu1a (ENSHCOG00000018056)	efnb2a (ENSHCOG00000018037)
Percomorphaceae_B	ANCESTRAL SPECIES	17							ENSGT00940000160811.c.a	ENSGT00950000183074.C	ENSGT00940000156913.b.j.b	ENSGT00390000008042.A.b.c	ENSGT00390000015352	ENSGT00940000154846.a.b	ENSGT01090000259987.a.a.a.p	ENSGT00940000160205	ENSGT00530000063686.a.a #17	ENSGT00390000015050.`b.a #22	ENSGT00390000000220.B.c.b #25	ENSGT00990000210518	ENSGT00580000081600.c.b	ENSGT00390000008142	ENSGT00390000011294	ENSGT00940000173884	ENSGT00940000158589.b.a	ENSGT00940000159505	ENSGT00390000012196	ENSGT00390000008902.kb	ENSGT00390000012174	ENSGT00940000155587.a.b	ENSGT00940000159245	ENSGT00390000011821	ENSGT00940000155131
Ovalentaria	ANCESTRAL SPECIES	14	ENSGT00940000159245	ENSGT00390000011821	ENSGT00940000155131	ENSGT00510000051617	ENSGT00940000158406	ENSGT00970000196894	ENSGT00940000158231.k	ENSGT00940000157314.B	ENSGT00510000048978	ENSGT00940000158231.l	ENSGT00390000016499	ENSGT00940000177543	ENSGT00940000170936	ENSGT00940000172822	ENSGT00530000063686.a.a #17	ENSGT00390000015050.`b.a #22	ENSGT00730000111249	ENSGT00940000155868.f	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037	ENSGT00940000155065.xb.a
Atherinomorphae	ANCESTRAL SPECIES	68	ENSGT00390000008902.kb	ENSGT00390000012196	ENSGT00940000159505	ENSGT00940000158589.b.a	ENSGT00940000173884	ENSGT00390000011294	ENSGT00390000008142	ENSGT00580000081600.c.b	ENSGT00940000160811.c.a	ENSGT00950000183074.C	ENSGT00940000156913.b.j.b	ENSGT00940000154846.a.b	ENSGT01090000259987.a.a.a.p	ENSGT00940000160205	ENSGT00530000063686.a.a #17	ENSGT00390000015050.`b.a #22	ENSGT00390000015352
Cyprinodontiformes	ANCESTRAL SPECIES	165															ENSGT00530000063686.a.a #17	ENSGT00390000015050.`b.a #22
Aplocheiloidei	ANCESTRAL SPECIES	104	ENSGT00990000205068	ENSGT00390000012196	ENSGT00940000159505	ENSGT00940000158589.b.a	ENSGT00390000011294	ENSGT00390000008142	ENSGT00580000081600.c.b	ENSGT00940000160811.c.a	ENSGT00950000183074.C	ENSGT00940000156913.b.j.b	ENSGT00390000015352	ENSGT00940000154846.a.b	ENSGT01090000259987.a.a.a.p	ENSGT00940000160205	ENSGT00530000063686.a.a #17	ENSGT00390000015050.`b.a #22
Mangrove rivulus	MODERN SPECIES	69	st3gal5 (ENSKMAG00000007514)	acsl1b (ENSKMAG00000007568)	ENSKMAG00000007660	CASP3 (ENSKMAG00000007682)	irf2 (ENSKMAG00000007697)	nkx1.2lb (ENSKMAG00000007712)	uvssa (ENSKMAG00000007728)	ENSKMAG00000007754	spdl1 (ENSKMAG00000007771)	trappc11 (ENSKMAG00000007799)	ENSKMAG00000007899	ENSKMAG00000007919	ENSKMAG00000007957	zgc:154054 (ENSKMAG00000007981)	setd7 (ENSKMAG00000008025)	mmadhcb (ENSKMAG00000008048) #22	FGF4 (ENSKMAG00000008061)	abhd18 (ENSKMAG00000008085)	ENSKMAG00000008142	immt (ENSKMAG00000008165)	slbp (ENSKMAG00000008187)
Turquoise killifish	MODERN SPECIES	1623	SPTLC1 (ENSNFUG00015013928)	FBXW2 (ENSNFUG00015013997)	prkag3b (ENSNFUG00015014015)	ENSNFUG00015014529	ENSNFUG00015014556	ENSNFUG00015014594	MARCO (ENSNFUG00015014614)	C1QL2 (ENSNFUG00015014635)	ENSNFUG00015014670	C9H2ORF76 (ENSNFUG00015014674)	DBI (ENSNFUG00015014727)	ENSNFUG00015014913	UBXN4 (ENSNFUG00015015217)	ENSNFUG00015015316	ENSNFUG00015015324 #17	MMADHC (ENSNFUG00015015343) #22	ENSNFUG00015015358	SCN4A (ENSNFUG00015015472)	ENSNFUG00015016219	GH1 (ENSNFUG00015016228)	ENSNFUG00015016267	Nfu_g_1_024719 (ENSNFUG00015016272)	ENSNFUG00015016278	RDM1 (ENSNFUG00015016291)	ITGA3A (ENSNFUG00015016307)	GBGT1 (ENSNFUG00015016329)	ENSNFUG00015016337	ENSNFUG00015016348	ABI3 (ENSNFUG00015016355)	ENSNFUG00015016380	SAMD14 (ENSNFUG00015016400)
Cyprinodontoidei	ANCESTRAL SPECIES	30	ENSGT00940000158493	ENSGT00390000004145.b	ENSGT00390000016484	ENSGT00940000155466.e.b	ENSGT00940000154014.b.b	ENSGT00390000005550	ENSGT00390000005581.b	ENSGT00530000063607.b.j.a	ENSGT00390000002215.i.a	ENSGT01100000263518.A.a.b	ENSGT00390000005949	ENSGT00390000017045	ENSGT00390000007295	ENSGT00390000012446	ENSGT01020000230587	ENSGT00390000015050.`b.a #22	ENSGT00390000015143	ENSGT00390000006303	ENSGT01050000244905.D	ENSGT00390000010463.a.b.c.b	ENSGT00940000159964	ENSGT00940000153744.A	ENSGT00510000048626	ENSGT00390000010706	ENSGT00950000183178.b.a	ENSGT00940000157085	ENSGT00940000165813.b	ENSGT00940000166931	ENSGT00940000163205.d	ENSGT00940000167830	ENSGT00890000139491
NAME_4	ANCESTRAL SPECIES	78	ENSGT00940000161839	ENSGT00530000063564.b.a.b	ENSGT00940000158493	ENSGT00390000004145.b	ENSGT00390000016484	ENSGT00940000155466.e.b	ENSGT00940000154014.b.b	ENSGT00390000005550	ENSGT00390000005581.b	ENSGT00390000002215.i.a	ENSGT01100000263518.A.a.b	ENSGT00390000005949	ENSGT00390000017045	ENSGT00390000007295	ENSGT00390000012446	ENSGT00390000015050.`b.a #22	ENSGT00390000015143	ENSGT00390000006303	ENSGT01050000244905.D	ENSGT00390000010463.a.b.c.b	ENSGT00940000159964	ENSGT00940000153744.A	ENSGT00510000048626	ENSGT00390000010706	ENSGT00950000183178.b.a	ENSGT00940000157085	ENSGT00940000165813.b	ENSGT00940000166931	ENSGT00940000163205.d	ENSGT00940000167830	ENSGT00890000139491
Mummichog	MODERN SPECIES	414			PGAP1 (ENSFHEG00000009945)	ENSFHEG00000009969	ENSFHEG00000009988	stk17b (ENSFHEG00000010004)	zgc:153521 (ENSFHEG00000010009)	stk17b (ENSFHEG00000010022)	ftcdnl1 (ENSFHEG00000010029)	LYPD1 (ENSFHEG00000010043)	gpr39 (ENSFHEG00000010113)	SLC35F5 (ENSFHEG00000010133)	SYMPK (ENSFHEG00000010274)	zgc:136439 (ENSFHEG00000010299)	asnsd1 (ENSFHEG00000010318)	ENSFHEG00000010337 #22	slc40a1 (ENSFHEG00000010366)	wdr75 (ENSFHEG00000010436)	STAT4 (ENSFHEG00000010514)	ENSFHEG00000010549	ENSFHEG00000010591	fkbp7 (ENSFHEG00000010600)	osgepl1 (ENSFHEG00000010667)	adat3 (ENSFHEG00000010687)	alkbh6 (ENSFHEG00000010697)	ormdl1 (ENSFHEG00000010723)	pms1 (ENSFHEG00000010760)	mstnb (ENSFHEG00000010777)	ddt (ENSFHEG00000010781)	gstt1b (ENSFHEG00000010796)	ENSFHEG00000010809
Sheepshead minnow	MODERN SPECIES	1433									ENSCVAG00000015184	ENSCVAG00000015164	ENSCVAG00000015156	SLC35F5 (ENSCVAG00000015101)	SYMPK (ENSCVAG00000015093)	zgc:136439 (ENSCVAG00000015055)	asnsd1 (ENSCVAG00000015044)	ENSCVAG00000014973 #22	slc40a1 (ENSCVAG00000014959)	wdr75 (ENSCVAG00000014942)	ENSCVAG00000014901
Poeciliinae	ANCESTRAL SPECIES	29	ENSGT00390000004145.b	ENSGT00390000016484	ENSGT00940000155466.e.b	ENSGT00940000154014.b.b	ENSGT00390000005550	ENSGT00390000005581.b	ENSGT00530000063607.b.j.a	ENSGT00390000002215.i.a	ENSGT00940000179078	ENSGT01100000263518.A.a.b	ENSGT00390000005949	ENSGT00390000017045	ENSGT00390000007295	ENSGT00390000012446	ENSGT01020000230587	ENSGT00390000015050.`b.a #22	ENSGT00390000015143	ENSGT00390000006303	ENSGT01050000244905.D	ENSGT00390000010463.a.b.c.b	ENSGT00940000159964	ENSGT00940000153744.A	ENSGT00510000048626	ENSGT00390000010706	ENSGT00950000183178.b.a	ENSGT00940000157085	ENSGT00940000165813.b	ENSGT00940000166931	ENSGT00940000163205.d	ENSGT00940000167830	ENSGT00890000139491
Poecilia	ANCESTRAL SPECIES	46	ENSGT00390000004145.b	ENSGT00390000016484	ENSGT00940000155466.e.b	ENSGT00940000154014.b.b	ENSGT00390000005550	ENSGT00390000005581.b	ENSGT00530000063607.b.j.a	ENSGT00390000002215.i.a	ENSGT00940000179078	ENSGT01100000263518.A.a.b	ENSGT00390000005949	ENSGT00390000017045	ENSGT00390000007295	ENSGT00390000012446	ENSGT01020000230587	ENSGT00390000015050.`b.a #22	ENSGT00390000015143	ENSGT00390000006303	ENSGT01050000244905.D	ENSGT00390000010463.a.b.c.b	ENSGT00940000159964	ENSGT00940000153744.A.f	ENSGT00940000153744.A.e.a	ENSGT00510000048626	ENSGT00390000010706	ENSGT00950000183178.b.a	ENSGT00940000157085	ENSGT00940000165813.b	ENSGT00940000166931	ENSGT00940000163205.d	ENSGT00940000167830
NAME_6	ANCESTRAL SPECIES	68			ENSGT00940000155466.e.b	ENSGT00940000154014.b.b	ENSGT00390000005550	ENSGT00390000005581.b	ENSGT00530000063607.b.j.a	ENSGT00390000002215.i.a	ENSGT00940000179078	ENSGT01100000263518.A.a.b	ENSGT00390000005949	ENSGT00390000017045	ENSGT00390000007295	ENSGT00390000012446	ENSGT01020000230587	ENSGT00390000015050.`b.a #22	ENSGT00390000015143	ENSGT00390000006303	ENSGT01050000244905.D	ENSGT00390000010463.a.b.c.b	ENSGT00940000159964	ENSGT00940000153744.A.f	ENSGT00940000153744.A.e.a	ENSGT00510000048626	ENSGT00390000010706	ENSGT00950000183178.b.a	ENSGT00940000157085	ENSGT00940000165813.b.c	ENSGT00940000165813.b.d	ENSGT00940000166931	ENSGT00940000163205.d
Amazon molly	MODERN SPECIES	867					HECW2 (ENSPFOG00000022704)	stk17b (ENSPFOG00000001924)	zgc:153521 (ENSPFOG00000001890)	ftcdnl1 (ENSPFOG00000001839)	ENSPFOG00000023941	LYPD1 (ENSPFOG00000001798)	gpr39 (ENSPFOG00000001772)	SLC35F5 (ENSPFOG00000001654)	SYMPK (ENSPFOG00000001194)	zgc:136439 (ENSPFOG00000000983)	asnsd1 (ENSPFOG00000000939)	mmadhcb (ENSPFOG00000020512) #22	slc40a1 (ENSPFOG00000000855)	ENSPFOG00000020511	wdr75 (ENSPFOG00000000605)	ENSPFOG00000022970	ENSPFOG00000000331
Sailfin molly	MODERN SPECIES	466			ENSPLAG00000012762	ENSPLAG00000012787	stk17b (ENSPLAG00000012797)	zgc:153521 (ENSPLAG00000012803)	ftcdnl1 (ENSPLAG00000012826)	LYPD1 (ENSPLAG00000012833)	ENSPLAG00000000808	gpr39 (ENSPLAG00000012930)	ENSPLAG00000012954	SYMPK (ENSPLAG00000012995)	zgc:136439 (ENSPLAG00000013011)	asnsd1 (ENSPLAG00000013037)	ENSPLAG00000013022	mmadhcb (ENSPLAG00000013051) #22	slc40a1 (ENSPLAG00000013074)	wdr75 (ENSPLAG00000013286)	ENSPLAG00000013307	ENSPLAG00000013363	ENSPLAG00000013378	ENSPLAG00000013446	fkbp7 (ENSPLAG00000013456)	osgepl1 (ENSPLAG00000013473)
Guppy	MODERN SPECIES	43										LYPD1 (ENSPREG00000006289)	gpr39 (ENSPREG00000006278)	SLC35F5 (ENSPREG00000006237)	SYMPK (ENSPREG00000006176)	zgc:136439 (ENSPREG00000006155)	asnsd1 (ENSPREG00000006146)	mmadhcb (ENSPREG00000006128) #22	slc40a1 (ENSPREG00000006108)	ENSPREG00000006096	ENSPREG00000006087	ENSPREG00000006063	ENSPREG00000006049	ENSPREG00000006031	ENSPREG00000006023
Platyfish	MODERN SPECIES	21	maip1 (ENSXMAG00000007203)	PGAP1 (ENSXMAG00000007189)	ENSXMAG00000025156	ENSXMAG00000021300	stk17b (ENSXMAG00000025493)	zgc:153521 (ENSXMAG00000007134)	ftcdnl1 (ENSXMAG00000028562)	ENSXMAG00000022676	LYPD1 (ENSXMAG00000006778)	ENSXMAG00000023359	gpr39 (ENSXMAG00000019979)	SLC35F5 (ENSXMAG00000005718)	SYMPK (ENSXMAG00000005737)	asnsd1 (ENSXMAG00000005802)	ENSXMAG00000029615	mmadhcb (ENSXMAG00000019818) #22	slc40a1 (ENSXMAG00000029620)	wdr75 (ENSXMAG00000005811)	ENSXMAG00000022033	ENSXMAG00000005845	ENSXMAG00000005850	fkbp7 (ENSXMAG00000005881)	osgepl1 (ENSXMAG00000005885)	ormdl1 (ENSXMAG00000005900)	adat3 (ENSXMAG00000005897)	pms1 (ENSXMAG00000005904)	ENSXMAG00000026653	hibch (ENSXMAG00000006425)	lss (ENSXMAG00000006445)	ENSXMAG00000015028	ybey (ENSXMAG00000015012)
Oryzias	ANCESTRAL SPECIES	10	ENSGT00390000008902.kb	ENSGT00390000012196	ENSGT00940000159505	ENSGT00940000158589.b.a	ENSGT00940000173884	ENSGT00390000011294	ENSGT00390000008142	ENSGT00580000081600.c.b	ENSGT00940000160811.c.a	ENSGT00950000183074.C	ENSGT00940000156913.b.j.b	ENSGT00390000015352	ENSGT00940000154846.a.b	ENSGT00940000160205	ENSGT00530000063686.a.a #17	ENSGT00390000015050.`b.a #22	ENSGT00940000157314.B	ENSGT00510000048978	ENSGT00940000158231.l	ENSGT00390000016499	ENSGT00730000111249	ENSGT00940000155868.f	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000011515	ENSGT00940000154817.b.a	ENSGT00940000159158
Oryzias_b	ANCESTRAL SPECIES	40	ENSGT00390000008902.kb	ENSGT00390000012196	ENSGT00940000159505	ENSGT00940000158589.b.a	ENSGT00940000173884	ENSGT00390000011294	ENSGT00390000008142	ENSGT00580000081600.c.b	ENSGT00940000160811.c.a	ENSGT00950000183074.C	ENSGT00940000156913.b.j.b	ENSGT00390000015352	ENSGT01090000259987.a.a.a.o.a	ENSGT00940000160205	ENSGT00530000063686.a.a #17	ENSGT00390000015050.`b.a #22	ENSGT00940000175580	ENSGT00390000016499	ENSGT00730000111249	ENSGT00940000155868.f	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00510000051617	ENSGT00390000011515	ENSGT00940000154817.b.a	ENSGT00940000159158
Indian medaka	MODERN SPECIES	18	ENSOMEG00000017009	ENSOMEG00000017019	pknox1.1 (ENSOMEG00000017074)	ENSOMEG00000017105	ENSOMEG00000017123	ccdc93 (ENSOMEG00000017201)	si:dkey-251i10.3 (ENSOMEG00000017220)	insig2 (ENSOMEG00000017239)	EN1 (ENSOMEG00000017248)	ENSOMEG00000017331	C1QL2 (ENSOMEG00000017377)	zgc:101851 (ENSOMEG00000017437)	ITGB2 (ENSOMEG00000017567)	ENSOMEG00000017623	ENSOMEG00000017652 #17	mmadhcb (ENSOMEG00000017695) #22	ENSOMEG00000017717	ENSOMEG00000017740	ENSOMEG00000017830	ENSOMEG00000017849	arglu1a (ENSOMEG00000017861)	efnb2a (ENSOMEG00000017892)	ENSOMEG00000017911	gtpbp8 (ENSOMEG00000017933)	slc10a2 (ENSOMEG00000017942)	ENSOMEG00000017956	inhbb (ENSOMEG00000017987)	ENSOMEG00000017996	gli2a (ENSOMEG00000018141)	ENSOMEG00000018202	ENSOMEG00000018218
Javanese ricefish	MODERN SPECIES	13	ENSOJAG00000003518	ENSOJAG00000003543	pknox1.1 (ENSOJAG00000003551)	ENSOJAG00000003579	ENSOJAG00000003760	ccdc93 (ENSOJAG00000004030)	si:dkey-251i10.3 (ENSOJAG00000005827)	insig2 (ENSOJAG00000005876)	EN1 (ENSOJAG00000006071)	ENSOJAG00000006080	C1QL2 (ENSOJAG00000006091)	DBI (ENSOJAG00000006119)	ENSOJAG00000006370	UBXN4 (ENSOJAG00000009102)	ENSOJAG00000009109 #17	mmadhcb (ENSOJAG00000009116) #22	ENSOJAG00000009167	ENSOJAG00000009185	ENSOJAG00000009195	ENSOJAG00000009240	arglu1a (ENSOJAG00000009269)	efnb2a (ENSOJAG00000009284)	ENSOJAG00000009310	gtpbp8 (ENSOJAG00000009340)	slc10a2 (ENSOJAG00000009355)	ENSOJAG00000009363	inhbb (ENSOJAG00000009376)	ENSOJAG00000009384	gli2a (ENSOJAG00000009414)	ENSOJAG00000009464	nifk (ENSOJAG00000009487)
Ovalentaria_B	ANCESTRAL SPECIES																	ENSGT00390000015050.`b.a #22
Pomacentridae	ANCESTRAL SPECIES	130																ENSGT00390000015050.`b.a #22	ENSGT00940000154846.a.b	ENSGT00390000015352	ENSGT00390000008042.A.b.c	ENSGT00940000156913.b.j.b	ENSGT00950000183074.C	ENSGT00940000160811.c.a	ENSGT00580000081600.c.b	ENSGT00390000008142	ENSGT00390000011294	ENSGT00940000173884	ENSGT00940000158589.b.a	ENSGT00940000159505	ENSGT00390000012196	ENSGT00940000175678	ENSGT00390000008902.kb
Pomacentridae_A	ANCESTRAL SPECIES	238																ENSGT00390000015050.`b.a #22	ENSGT00940000154846.a.b	ENSGT00390000015352	ENSGT00940000156913.b.j.b	ENSGT00950000183074.C	ENSGT00940000160811.c.a	ENSGT00580000081600.c.b	ENSGT00390000008142	ENSGT00390000011294
Amphiprion	ANCESTRAL SPECIES	151	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00940000178367	ENSGT00940000158231.k	ENSGT00940000157314.B	ENSGT00510000048978	ENSGT00940000158231.l	ENSGT00390000016499	ENSGT00940000158406	ENSGT00940000155131	ENSGT00510000051617	ENSGT00390000015050.`b.a #22	ENSGT00940000154846.a.b	ENSGT00390000015352	ENSGT00940000156913.b.j.b	ENSGT00950000183074.C	ENSGT00940000182331	ENSGT00940000160811.c.a	ENSGT00580000081600.c.b	ENSGT00390000008142	ENSGT00390000011294
Clown anemonefish	MODERN SPECIES	569	inhbb (ENSAOCG00000022574)	gli2a (ENSAOCG00000022692)	ENSAOCG00000022736	tfcp2l1 (ENSAOCG00000022791)	clasp1a (ENSAOCG00000022851)	ENSAOCG00000022866	ENSAOCG00000022875	ENSAOCG00000022886	ENSAOCG00000022894	ENSAOCG00000022909	C21orf62 (ENSAOCG00000022920)	ENSAOCG00000022939	TMEM50B (ENSAOCG00000022965)	ENSAOCG00000022972	ENSAOCG00000022978	mmadhcb (ENSAOCG00000001944) #22	dbi (ENSAOCG00000023005)	zgc:101851 (ENSAOCG00000023046)	C1QL2 (ENSAOCG00000001665)	MARCO (ENSAOCG00000023087)	ENSAOCG00000023101	EN1 (ENSAOCG00000023108)	INSIG2 (ENSAOCG00000023125)	si:dkey-251i10.3 (ENSAOCG00000023132)	ccdc93 (ENSAOCG00000002064)	ENSAOCG00000001674
Orange clownfish	MODERN SPECIES	3	ENSAPEG00000023295	inhbb (ENSAPEG00000023303)	gli2a (ENSAPEG00000023332)	ENSAPEG00000023465	tfcp2l1 (ENSAPEG00000023475)	clasp1a (ENSAPEG00000023539)	ENSAPEG00000023594	ENSAPEG00000023600	ENSAPEG00000023613	ENSAPEG00000023650	ENSAPEG00000023665	C21orf62 (ENSAPEG00000023672)	ENSAPEG00000023684	TMEM50B (ENSAPEG00000023709)	ENSAPEG00000023720	mmadhcb (ENSAPEG00000023729) #22	DBI (ENSAPEG00000023741)	zgc:101851 (ENSAPEG00000023758)	ENSAPEG00000023776	C1QL2 (ENSAPEG00000023788)	ENSAPEG00000023808	MARCO (ENSAPEG00000023833)	ENSAPEG00000023847	EN1 (ENSAPEG00000023852)	ENSAPEG00000023863	INSIG2 (ENSAPEG00000023918)	si:dkey-251i10.3 (ENSAPEG00000023935)	ccdc93 (ENSAPEG00000023969)	lcmt2 (ENSAPEG00000023989)	CRYGS (ENSAPEG00000024003)	TMPRSS3 (ENSAPEG00000024022)
Spiny chromis	MODERN SPECIES	3154																mmadhcb (ENSAPOG00000007099) #22	DBI (ENSAPOG00000007144)
Bicolor damselfish	MODERN SPECIES	1383												ITGB2 (ENSSPAG00000006047)	ENSSPAG00000006067	ENSSPAG00000006079	ENSSPAG00000006092 #17	mmadhcb (ENSSPAG00000006111) #22	dbi (ENSSPAG00000006143)	zgc:101851 (ENSSPAG00000006154)	STEAP3 (ENSSPAG00000006163)	C1QL2 (ENSSPAG00000006173)
Cichlidae	ANCESTRAL SPECIES	82											ENSGT01090000259987.a.a.a.p	ENSGT00940000170936	ENSGT00940000172822	ENSGT00940000160205	ENSGT00530000063686.a.a #17	ENSGT00390000015050.`b.a #22	ENSGT00940000159245	ENSGT00940000155587.a.b	ENSGT00390000012174	ENSGT00390000008902.kb	ENSGT00390000012196	ENSGT00940000159505	ENSGT00940000158589.b.a	ENSGT00390000011294	ENSGT00390000008142	ENSGT00580000081600.c.b	ENSGT00940000160811.c.a	ENSGT00950000183074.C	ENSGT00940000156913.b.j.b	ENSGT00390000015352	ENSGT00940000154846.a.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	44														ENSGT00940000160205	ENSGT00530000063686.a.a #17	ENSGT00390000015050.`b.a #22	ENSGT00940000159245	ENSGT00940000155587.a.b	ENSGT00390000012174	ENSGT00390000012196	ENSGT00940000159505	ENSGT00940000158589.b.a	ENSGT00390000011294	ENSGT00390000008142	ENSGT00580000081600.c.b	ENSGT00940000160811.c.a	ENSGT00950000183074.C	ENSGT00940000156913.b.j.b	ENSGT00390000015352	ENSGT00940000154846.a.b	ENSGT00940000156402.A.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	58															ENSGT00530000063686.a.a #17	ENSGT00390000015050.`b.a #22	ENSGT00940000159245	ENSGT00940000155587.a.b	ENSGT00390000012174	ENSGT00390000012196	ENSGT00940000159505	ENSGT00940000158589.b.a	ENSGT00390000011294	ENSGT00390000008142	ENSGT00580000081600.c.b	ENSGT00940000163452.l	ENSGT00940000160811.c.a	ENSGT00950000183074.C	ENSGT00940000156913.b.j.b	ENSGT00390000015352	ENSGT00940000154846.a.b
Haplochromini	ANCESTRAL SPECIES	67															ENSGT00530000063686.a.a #17	ENSGT00390000015050.`b.a #22	ENSGT00940000159245	ENSGT00940000155587.a.b	ENSGT00390000012174	ENSGT00390000012196	ENSGT00940000159505	ENSGT00940000158589.b.a	ENSGT00390000011294	ENSGT00390000008142	ENSGT00580000081600.c.b	ENSGT00940000163452.l	ENSGT00940000160811.c.a	ENSGT00950000183074.C	ENSGT00940000156913.b.j.b	ENSGT00390000015352	ENSGT00940000154846.a.b
Burton s mouthbrooder	MODERN SPECIES	646															ENSHBUG00000020707 #17	mmadhcb (ENSHBUG00000020746) #22	slc37a1 (ENSHBUG00000020906)	PDE9A (ENSHBUG00000020924)	wdr4 (ENSHBUG00000020935)	ENSHBUG00000020945	pknox1.1 (ENSHBUG00000020992)	TMPRSS3 (ENSHBUG00000021035)	ccdc93 (ENSHBUG00000021055)	si:dkey-251i10.3 (ENSHBUG00000000649)	insig2 (ENSHBUG00000021080)	ENSHBUG00000021114	EN1 (ENSHBUG00000021128)	zgc:101851 (ENSHBUG00000021150)	dbi (ENSHBUG00000021164)	ENSHBUG00000021277
Haplochromini_A	ANCESTRAL SPECIES	87															ENSGT00530000063686.a.a #17	ENSGT00390000015050.`b.a #22	ENSGT00940000159245	ENSGT00940000155587.a.b	ENSGT00390000012174	ENSGT00390000012196	ENSGT00940000159505	ENSGT00940000158589.b.a	ENSGT00390000011294	ENSGT00390000008142	ENSGT00580000081600.c.b	ENSGT00940000163452.l	ENSGT00940000160811.c.a	ENSGT00950000183074.C	ENSGT00940000156913.b.j.b	ENSGT00390000015352	ENSGT00940000154846.a.b
Haplochromini_B	ANCESTRAL SPECIES	76															ENSGT00530000063686.a.a #17	ENSGT00390000015050.`b.a #22	ENSGT00940000159245	ENSGT00940000155587.a.b	ENSGT00390000012174	ENSGT00390000012196	ENSGT00940000159505	ENSGT00940000158589.b.a	ENSGT00390000011294	ENSGT00390000008142	ENSGT00580000081600.c.b.s	ENSGT00940000163452.l	ENSGT00940000160811.c.a	ENSGT00950000183074.C	ENSGT00940000156913.b.j.b	ENSGT00390000015352	ENSGT00940000154846.a.b
Zebra mbuna	MODERN SPECIES	159															ENSMZEG00005013771 #17	mmadhcb (ENSMZEG00005013762) #22	slc37a1 (ENSMZEG00005013735)	PDE9A (ENSMZEG00005013723)	wdr4 (ENSMZEG00005013711)	ENSMZEG00005013702	pknox1.1 (ENSMZEG00005013691)	TMPRSS3 (ENSMZEG00005013673)	ccdc93 (ENSMZEG00005013648)	si:dkey-251i10.3 (ENSMZEG00005013633)	INSIG2 (ENSMZEG00005013631)
Eastern happy	MODERN SPECIES	7															ENSACLG00000005971 #17	mmadhcb (ENSACLG00000005999) #22	slc37a1 (ENSACLG00000006031)	ENSACLG00000006117	PDE9A (ENSACLG00000006122)	wdr4 (ENSACLG00000006132)	ENSACLG00000006140	pknox1.1 (ENSACLG00000006161)	TMPRSS3 (ENSACLG00000006214)	ENSACLG00000006241	ccdc93 (ENSACLG00000006247)	si:dkey-251i10.3 (ENSACLG00000006291)	insig2 (ENSACLG00000006300)	ENSACLG00000006319	ENSACLG00000006530	ENSACLG00000006549	EN1 (ENSACLG00000006553)
P. nyererei	MODERN SPECIES	610															ENSPNYG00000022750 #17	mmadhcb (ENSPNYG00000022755) #22	slc37a1 (ENSPNYG00000022762)	PDE9A (ENSPNYG00000022775)	wdr4 (ENSPNYG00000022779)	ENSPNYG00000022788	pknox1.1 (ENSPNYG00000022799)	TMPRSS3 (ENSPNYG00000022810)	ccdc93 (ENSPNYG00000022855)	si:dkey-251i10.3 (ENSPNYG00000022865)	insig2 (ENSPNYG00000022870)	ENSPNYG00000022877	EN1 (ENSPNYG00000022882)	ENSPNYG00000022892	C1QL2 (ENSPNYG00000022899)	zgc:101851 (ENSPNYG00000022912)	dbi (ENSPNYG00000022922)
Nile tilapia	MODERN SPECIES	7	ENSONIG00000038798	satb2 (ENSONIG00000013780)	dnajb11 (ENSONIG00000013783)	tbccd1 (ENSONIG00000013786)	crygs1 (ENSONIG00000013790)	lcmt2 (ENSONIG00000013793)	rab5b (ENSONIG00000013796)	dbr1 (ENSONIG00000013801)	armc8 (ENSONIG00000013804)	ENSONIG00000013811	ENSONIG00000013821	ENSONIG00000013816	ENSONIG00000039173	UBXN4 (ENSONIG00000017402)	nmi (ENSONIG00000017404) #17	mmadhcb (ENSONIG00000017407) #22	slc37a1 (ENSONIG00000017408)	PDE9A (ENSONIG00000017410)	ENSONIG00000029745	wdr4 (ENSONIG00000017415)	ENSONIG00000029755	ENSONIG00000040783	pknox1.1 (ENSONIG00000017418)	TMPRSS3 (ENSONIG00000017423)	ENSONIG00000038272	ccdc93 (ENSONIG00000017425)	si:dkey-251i10.3 (ENSONIG00000020563)	insig2 (ENSONIG00000017428)	ENSONIG00000035463	EN1 (ENSONIG00000017432)	ENSONIG00000036588
Midas cichlid	MODERN SPECIES	1351												ENSACIG00000003509	ubxn4 (ENSACIG00000003578)	ENSACIG00000003587	ENSACIG00000003598 #17	mmadhcb (ENSACIG00000003616) #22	slc37a1 (ENSACIG00000003635)	PDE9A (ENSACIG00000003713)	wdr4 (ENSACIG00000003750)	ENSACIG00000003774	ENSACIG00000003875	pknox1.1 (ENSACIG00000003887)	ENSACIG00000003912	ccdc93 (ENSACIG00000003942)	si:dkey-251i10.3 (ENSACIG00000004000)	insig2 (ENSACIG00000004028)
Percomorphaceae_C	ANCESTRAL SPECIES	13							ENSGT00940000160811.c.a	ENSGT00950000183074.C	ENSGT00940000156913.b.j.b	ENSGT00390000008042.A.b.c	ENSGT00390000015352	ENSGT00940000154846.a.b	ENSGT01090000259987.a.a.a.p	ENSGT00940000160205	ENSGT00530000063686.a.a #17	ENSGT00390000015050.`b.a #22	ENSGT00390000000220.B.c.b #25	ENSGT00990000210518	ENSGT00580000081600.c.b	ENSGT00390000008142	ENSGT00390000011294	ENSGT00940000173884	ENSGT00940000158589.b.a	ENSGT00940000159505	ENSGT00390000012196	ENSGT00390000008902.kb	ENSGT00390000012174	ENSGT00940000155587.a.b	ENSGT00940000159245	ENSGT00390000011821	ENSGT00940000155131
Percomorphaceae_D	ANCESTRAL SPECIES	12	ENSGT00390000008142	ENSGT00390000011294	ENSGT00940000173884	ENSGT00940000158589.b.a	ENSGT00940000159505	ENSGT00390000012196	ENSGT00390000008902.kb	ENSGT00390000012174	ENSGT00940000155587.a.b	ENSGT00940000159245	ENSGT00390000011821	ENSGT00940000155131	ENSGT00510000051617	ENSGT00940000158406	ENSGT00530000063686.a.a #17	ENSGT00390000015050.`b.a #22	ENSGT00390000000220.B.c.b #25	ENSGT00940000158231.k	ENSGT00940000157314.B	ENSGT00510000048978	ENSGT00940000158231.l	ENSGT00390000016499	ENSGT00940000177543	ENSGT00730000111249	ENSGT00940000155868.f	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a
Anabantaria	ANCESTRAL SPECIES	45	ENSGT00390000008902.kb	ENSGT00390000012196	ENSGT00940000159505	ENSGT00940000158589.b.a	ENSGT00390000011294	ENSGT00390000008142	ENSGT00580000081600.c.b	ENSGT00940000160811.c.a	ENSGT00950000183074.C	ENSGT00940000156913.b.j.b	ENSGT00390000015352	ENSGT00940000154846.a.b	ENSGT01090000259987.a.a.a.p	ENSGT00940000160205	ENSGT00530000063686.a.a #17	ENSGT00390000015050.`b.a #22
Anabantoidei	ANCESTRAL SPECIES	81															ENSGT00530000063686.a.a #17	ENSGT00390000015050.`b.a #22
Climbing perch	MODERN SPECIES	12	PDE9A (ENSATEG00000005121)	wdr4 (ENSATEG00000005195)	ENSATEG00000005206	ENSATEG00000005228	pknox1.1 (ENSATEG00000005278)	ENSATEG00000005294	CCDC93 (ENSATEG00000005402)	ENSATEG00000005429	INSIG2 (ENSATEG00000029786)	EN1 (ENSATEG00000005465)	MARCO (ENSATEG00000005491)	C1QL2 (ENSATEG00000005501)	ENSATEG00000005582	ENSATEG00000005619	ENSATEG00000005649 #17	ENSATEG00000005666 #22	ENSATEG00000027703	ENSATEG00000005727	arglu1a (ENSATEG00000005743)	efnb2a (ENSATEG00000030016)	gtpbp8 (ENSATEG00000005805)	slc10a2 (ENSATEG00000025740)	ENSATEG00000026038	ENSATEG00000027382	ENSATEG00000027795	gli2a (ENSATEG00000005931)	ENSATEG00000005997	ENSATEG00000025776	clasp1a (ENSATEG00000006024)	ENSATEG00000006206	ENSATEG00000006246
Siamese fighting fish	MODERN SPECIES	11	ENSBSLG00000009912	ENSBSLG00000009834	ENSBSLG00000009817	ENSBSLG00000009811	ENSBSLG00000009746	ENSBSLG00000009720	UBXN4 (ENSBSLG00000009696)	ENSBSLG00000007189	ENSBSLG00000007040 #17	ENSBSLG00000007024	ENSBSLG00000007000	ENSBSLG00000006932	ENSBSLG00000006732	DBI (ENSBSLG00000006649)	C1QL2 (ENSBSLG00000006627)	mmadhcb (ENSBSLG00000006488) #22	ENSBSLG00000006433	EN1 (ENSBSLG00000006407)	ENSBSLG00000006380	insig2 (ENSBSLG00000006324)	si:dkey-251i10.3 (ENSBSLG00000006076)	ccdc93 (ENSBSLG00000005547)	ENSBSLG00000005283	pknox1.1 (ENSBSLG00000005166)	ENSBSLG00000005135	ENSBSLG00000005048	wdr4 (ENSBSLG00000004997)	cavin2a (ENSBSLG00000004991)	tmeff2a (ENSBSLG00000004942)	ENSBSLG00000025385	DNAH7 (ENSBSLG00000024864)
Zig-zag eel	MODERN SPECIES	13	ENSMAMG00000007263	pknox1.1 (ENSMAMG00000007305)	ENSMAMG00000007351	ENSMAMG00000024410	CCDC93 (ENSMAMG00000007390)	ENSMAMG00000025535	INSIG2 (ENSMAMG00000026450)	EN1 (ENSMAMG00000007474)	ENSMAMG00000007507	ENSMAMG00000007522	ENSMAMG00000007555	ENSMAMG00000007587	ENSMAMG00000008526	ENSMAMG00000008539	ENSMAMG00000008574 #17	ENSMAMG00000026151 #22	arglu1a (ENSMAMG00000024802)	efnb2a (ENSMAMG00000026875)	ENSMAMG00000026788	ENSMAMG00000008656	gtpbp8 (ENSMAMG00000008709)	slc10a2 (ENSMAMG00000028476)	ENSMAMG00000008731	ENSMAMG00000008751	ENSMAMG00000008771	clasp1a (ENSMAMG00000008838)	ENSMAMG00000008963	ENSMAMG00000008986	ENSMAMG00000009052	ENSMAMG00000009100	ENSMAMG00000009139
Carangaria	ANCESTRAL SPECIES	12	ENSGT00940000159245	ENSGT00390000011821	ENSGT00940000155131	ENSGT00510000051617	ENSGT00940000158406	ENSGT00940000158231.k	ENSGT00940000157314.B	ENSGT00510000048978	ENSGT00940000158231.l	ENSGT00390000016499	ENSGT00940000154641.C.b.g.b	ENSGT01090000259987.a.a.a.p	ENSGT00940000160205	ENSGT00530000063686.a.a #17	ENSGT00940000157541.f.d #20	ENSGT00390000015050.`b.a #22	ENSGT00390000000220.B.c.b #25	ENSGT00940000177543	ENSGT00730000111249	ENSGT00940000155868.f	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a
Pleuronectoidei	ANCESTRAL SPECIES	9			ENSGT01100000263523.I.a.a.a.b	ENSGT01100000263523.G.a.b.b	ENSGT01040000241217	ENSGT00390000006631	ENSGT00950000183208.A.c.b	ENSGT00940000157233.d #32	ENSGT00940000158526 #29	ENSGT00940000154801.p	ENSGT00950000182860.a.b.b	ENSGT01090000259987.a.a.a.p	ENSGT00940000160205	ENSGT00530000063686.a.a #17	ENSGT00940000157541.f.d #20	ENSGT00390000015050.`b.a #22	ENSGT00730000111249	ENSGT00940000155868.f	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037	ENSGT00940000155065.xb.a	ENSGT00940000154657.A.c
Turbot	MODERN SPECIES	5	mstnb (ENSSMAG00000016251)	pms1 (ENSSMAG00000016259)	ormdl1 (ENSSMAG00000016290)	adat3 (ENSSMAG00000016304)	ENSSMAG00000016306	osgepl1 (ENSSMAG00000016314)	ENSSMAG00000016384	ENSSMAG00000016431	ENSSMAG00000030365	ENSSMAG00000022580	ENSSMAG00000016955	ENSSMAG00000016929	ENSSMAG00000016920	ENSSMAG00000016902	ENSSMAG00000016847	ENSSMAG00000016812 #22	arglu1a (ENSSMAG00000016795)	efnb2a (ENSSMAG00000016754)	gtpbp8 (ENSSMAG00000002103)	slc10a2 (ENSSMAG00000002074)	ENSSMAG00000002063	INHBB (ENSSMAG00000002053)	gli2a (ENSSMAG00000002040)	tfcp2l1 (ENSSMAG00000001965)	clasp1a (ENSSMAG00000001880)	nifk (ENSSMAG00000001845)	ENSSMAG00000001792	ENSSMAG00000001675	ENSSMAG00000001652	ENSSMAG00000001627	ENSSMAG00000001475
Carangaria_A	ANCESTRAL SPECIES	67	ENSGT00940000159245	ENSGT00390000011821	ENSGT00940000155131	ENSGT00510000051617	ENSGT00940000158406	ENSGT00940000158231.k	ENSGT00940000157314.B	ENSGT00510000048978	ENSGT00940000158231.l	ENSGT00390000016499	ENSGT00940000154641.C.b.g.b	ENSGT01090000259987.a.a.a.p	ENSGT00940000160205	ENSGT00530000063686.a.a #17	ENSGT00940000157541.f.d #20	ENSGT00390000015050.`b.a #22	ENSGT00390000000220.B.c.b #25	ENSGT00940000177543	ENSGT00730000111249	ENSGT00940000155868.f	ENSGT00960000187045	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a
Seriola	ANCESTRAL SPECIES	95	ENSGT00940000155587.a.b	ENSGT00940000159245	ENSGT00390000011821	ENSGT00940000155131	ENSGT00510000051617	ENSGT00940000158406	ENSGT00940000157541.f.d #20	ENSGT00530000063686.a.a #17	ENSGT00940000160205	ENSGT01090000259987.a.a.a.p	ENSGT00390000016499	ENSGT00940000158231.l	ENSGT00510000048978	ENSGT00940000157314.B	ENSGT00940000158231.k	ENSGT00390000015050.`b.a #22	ENSGT00390000000220.B.c.b #25	ENSGT00940000177543	ENSGT00730000111249	ENSGT00940000155868.f	ENSGT00960000187045	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a
Greater amberjack	MODERN SPECIES	79	slc37a1 (ENSSDUG00000000459)	ENSSDUG00000000551	TMEM50B (ENSSDUG00000000569)	ENSSDUG00000000592	ENSSDUG00000000604	zgc:113274 (ENSSDUG00000000610)	rnd3b (ENSSDUG00000000627) #20	ENSSDUG00000000646 #17	UBXN4 (ENSSDUG00000000657)	ENSSDUG00000000668	C21orf62 (ENSSDUG00000000682)	ENSSDUG00000000690	ENSSDUG00000000708	ENSSDUG00000000716	ENSSDUG00000000725	mmadhcb (ENSSDUG00000000742) #22	ENSSDUG00000000773	LYPD6 (ENSSDUG00000000787) #25	ENSSDUG00000000823	ENSSDUG00000000850	arglu1a (ENSSDUG00000000872)	efnb2a (ENSSDUG00000000898)	ENSSDUG00000000926	gtpbp8 (ENSSDUG00000000998)	slc10a2 (ENSSDUG00000001011)	ENSSDUG00000001031	inhbb (ENSSDUG00000001054)	gli2a (ENSSDUG00000001079)	ENSSDUG00000001237
Yellowtail amberjack	MODERN SPECIES	2968	ENSSLDG00000002484	ENSSLDG00000002513	ENSSLDG00000002538	TMEM50B (ENSSLDG00000002565)	ENSSLDG00000002599	ENSSLDG00000002610	rnd3b (ENSSLDG00000002633) #20	ENSSLDG00000002686 #17	ENSSLDG00000002708	ENSSLDG00000002784	ENSSLDG00000002798	ENSSLDG00000002830	ENSSLDG00000002872	ENSSLDG00000002891	ENSSLDG00000002908	mmadhcb (ENSSLDG00000002926) #22	LYPD6 (ENSSLDG00000002966) #25	ENSSLDG00000002991	arglu1a (ENSSLDG00000003015)	efnb2a (ENSSLDG00000003056)	ENSSLDG00000003106	ENSSLDG00000003121	tfcp2l1 (ENSSLDG00000003147)	clasp1a (ENSSLDG00000003234)	nifk (ENSSLDG00000003456)	ENSSLDG00000003474	zgc:172295 (ENSSLDG00000003563)	ddx18 (ENSSLDG00000003692)	actr3 (ENSSLDG00000003797)	ENSSLDG00000003857	ENSSLDG00000003951
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	570												ENSLCAG00010027284	ENSLCAG00010027264	ENSLCAG00010027263 #17	rnd3b (ENSLCAG00010027262) #20	mmadhcb (ENSLCAG00010027261) #22	LYPD6 (ENSLCAG00010027260) #25
Barramundi perch	MODERN SPECIES	1515																mmadhcb (ENSLCAG00010008173) #22
Eupercaria	ANCESTRAL SPECIES	25	ENSGT00940000159505	ENSGT00940000158589.b.a	ENSGT00940000173884	ENSGT00390000011294	ENSGT00390000008142	ENSGT00580000081600.c.b	ENSGT00940000160811.c.a	ENSGT00950000183074.C	ENSGT00940000156913.b.j.b	ENSGT00390000008042.A.b.c	ENSGT00390000015352	ENSGT00940000154846.a.b	ENSGT01090000259987.a.a.a.p	ENSGT00940000160205	ENSGT00530000063686.a.a #17	ENSGT00390000015050.`b.a #22
Tetraodontidae	ANCESTRAL SPECIES		ENSGT00530000063609.a	ENSGT01050000244956.b	ENSGT00390000006350	ENSGT00390000005727.b	ENSGT00940000155367	ENSGT00390000018393.cb	ENSGT00950000182908.D	ENSGT00390000008096.B.e.a	ENSGT00940000155792	ENSGT00470000042284	ENSGT00940000162599	ENSGT00940000166096	ENSGT00510000047481	ENSGT00390000003033	ENSGT01090000259987.a.a.a.p	ENSGT00390000015050.`b.a #22	ENSGT00530000063686.a.a #17	ENSGT00940000160205	ENSGT00940000161651	ENSGT00940000162722	ENSGT00940000166972	ENSGT00950000182936.a.a.a	ENSGT00940000159415	ENSGT00390000003873	ENSGT00940000164416	ENSGT00940000167264	ENSGT00940000154453.a.b.a.a.a	ENSGT00940000162639	ENSGT00940000159743	ENSGT00730000111148	ENSGT00940000155611
Fugu	MODERN SPECIES		rftn2 (ENSTRUG00000015655)	mob4 (ENSTRUG00000015642)	hspe1 (ENSTRUG00000015632)	hspd1 (ENSTRUG00000015595)	coq10b (ENSTRUG00000015585)	SF3B1 (ENSTRUG00000015534)	ANKRD44 (ENSTRUG00000015438)	satb2 (ENSTRUG00000015384)	dnajb11 (ENSTRUG00000015340)	tbccd1 (ENSTRUG00000015315)	lcmt2 (ENSTRUG00000015304)	rab5b (ENSTRUG00000015268)	dbr1 (ENSTRUG00000021594)	armc8 (ENSTRUG00000015163)	ITGB2 (ENSTRUG00000015046)	mmadhcb (ENSTRUG00000022204) #22	ENSTRUG00000014989 #17	UBXN4 (ENSTRUG00000014954)	OLIG2 (ENSTRUG00000029420)	olig1 (ENSTRUG00000022451)	hpx (ENSTRUG00000014903)	fhip1b (ENSTRUG00000014870)	ENSTRUG00000014828	TRAPPC10 (ENSTRUG00000014791)	gdf3 (ENSTRUG00000020450)	ENSTRUG00000014697	ccnyl1 (ENSTRUG00000014654)	fzd5 (ENSTRUG00000014647)	PLEKHM3 (ENSTRUG00000024292)	sestd1 (ENSTRUG00000014532)	ENSTRUG00000014480
Tetraodon	MODERN SPECIES	13	PLCL1 (ENSTNIG00000011535)	rftn2 (ENSTNIG00000011534)	mob4 (ENSTNIG00000011533)	hspe1 (ENSTNIG00000011532)	hspd1 (ENSTNIG00000011531)	coq10b (ENSTNIG00000011530)	satb2 (ENSTNIG00000005271)	dnajb11 (ENSTNIG00000006714)	tbccd1 (ENSTNIG00000006713)	lcmt2 (ENSTNIG00000006712)	rab5b (ENSTNIG00000006711)	dbr1 (ENSTNIG00000006710)	armc8 (ENSTNIG00000006709)	ENSTNIG00000006708	ENSTNIG00000001077	mmadhcb (ENSTNIG00000006707) #22	ENSTNIG00000006706 #17	UBXN4 (ENSTNIG00000006705)	OLIG2 (ENSTNIG00000000234)	olig1 (ENSTNIG00000006704)	hpxa (ENSTNIG00000006703)	fhip1b (ENSTNIG00000006702)	ENSTNIG00000005539	CNGA4 (ENSTNIG00000005540)	TRAPPC10 (ENSTNIG00000005541)	gdf3 (ENSTNIG00000005542)	ENSTNIG00000005543	ccnyl1 (ENSTNIG00000005544)	fzd5 (ENSTNIG00000000546)	PLEKHM3 (ENSTNIG00000005545)	sestd1 (ENSTNIG00000005546)
Eupecaria_A	ANCESTRAL SPECIES	24	ENSGT00940000173884	ENSGT00390000011294	ENSGT00390000008142	ENSGT00580000081600.c.b	ENSGT00940000160811.c.a	ENSGT00950000183074.C	ENSGT00940000156913.b.j.b	ENSGT00390000008042.A.b.c	ENSGT00390000015352	ENSGT00940000154846.a.b	ENSGT01090000259987.a.a.a.p	ENSGT00940000160205	ENSGT00940000170936	ENSGT00940000172822	ENSGT00530000063686.a.a #17	ENSGT00390000015050.`b.a #22
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	1491														ENSLBEG00000011992	ENSLBEG00000012021 #17	mmadhcb (ENSLBEG00000012072) #22
Ballan wrasse	MODERN SPECIES	1996																mmadhcb (ENSLBEG00000013666) #22	ENSLBEG00000013653	ENSLBEG00000013637
Eupecaria_B	ANCESTRAL SPECIES	24	ENSGT00940000159505	ENSGT00940000158589.b.a	ENSGT00940000173884	ENSGT00390000011294	ENSGT00390000008142	ENSGT00580000081600.c.b	ENSGT00940000160811.c.a	ENSGT00950000183074.C	ENSGT00940000156913.b.j.b	ENSGT00390000008042.A.b.c	ENSGT00390000015352	ENSGT00940000154846.a.b	ENSGT01090000259987.a.a.a.p	ENSGT00940000160205	ENSGT00530000063686.a.a #17	ENSGT00390000015050.`b.a #22
Perciformes	ANCESTRAL SPECIES	23	ENSGT00940000159505	ENSGT00940000158589.b.a	ENSGT00940000173884	ENSGT00390000011294	ENSGT00390000008142	ENSGT00580000081600.c.b	ENSGT00940000160811.c.a	ENSGT00950000183074.C	ENSGT00940000156913.b.j.b	ENSGT00390000008042.A.b.c	ENSGT00390000015352	ENSGT00940000154846.a.b	ENSGT01090000259987.a.a.a.p	ENSGT00940000160205	ENSGT00530000063686.a.a #17	ENSGT00390000015050.`b.a #22
Cottioidei	ANCESTRAL SPECIES	30	ENSGT00940000155587.a.b	ENSGT00390000012174	ENSGT00390000008902.kb	ENSGT00940000175678	ENSGT00940000159505	ENSGT00940000158589.b.a	ENSGT00390000011294	ENSGT00390000008142	ENSGT00580000081600.c.b	ENSGT00940000160811.c.a	ENSGT00950000183074.C	ENSGT00940000156913.b.j.b	ENSGT00940000154846.a.b	ENSGT00390000015352	ENSGT00530000063686.a.a #17	ENSGT00390000015050.`b.a #22
Lumpfish	MODERN SPECIES	13	pknox1.1 (ENSCLMG00005008140)	TMPRSS3 (ENSCLMG00005008132)	ENSCLMG00005008127	ccdc93 (ENSCLMG00005007955)	si:dkey-251i10.3 (ENSCLMG00005007949)	insig2 (ENSCLMG00005007948)	EN1 (ENSCLMG00005007946)	ENSCLMG00005007892	C1QL2 (ENSCLMG00005007890)	DBI (ENSCLMG00005007888)	zgc:101851 (ENSCLMG00005007887)	ENSCLMG00005007886	rnpc3 (ENSCLMG00005007884)	ENSCLMG00005004178	ENSCLMG00005004155 #17	mmadhcb (ENSCLMG00005004153) #22	ENSCLMG00005004152	slc10a2 (ENSCLMG00005004144)	gtpbp8 (ENSCLMG00005004140)	ENSCLMG00005004138	efnb2a (ENSCLMG00005004136)	arglu1a (ENSCLMG00005004135)	ENSCLMG00005004133	ENSCLMG00005004130	ENSCLMG00005004126	ENSCLMG00005004123	UBXN4 (ENSCLMG00005004115)	ENSCLMG00005004111	ENSCLMG00005004108	ENSCLMG00005004105	ENSCLMG00005004099
Stickleback	MODERN SPECIES	16	ccdc93 (ENSGACG00000001463)	ENSGACG00000001462	TMPRSS3 (ENSGACG00000001457)	pknox1.1 (ENSGACG00000001456)	ENSGACG00000001455	wdr4 (ENSGACG00000001454)	PDE9A (ENSGACG00000001450)	slc37a1 (ENSGACG00000001446)	ENSGACG00000001438	ENSGACG00000001436	ENSGACG00000001431	ENSGACG00000001430	ENSGACG00000001427	ENSGACG00000001424	ENSGACG00000001422 #17	mmadhcb (ENSGACG00000001417) #22
Perciformes_a	ANCESTRAL SPECIES	23	ENSGT00940000159505	ENSGT00940000158589.b.a	ENSGT00940000173884	ENSGT00390000011294	ENSGT00390000008142	ENSGT00580000081600.c.b	ENSGT00940000160811.c.a	ENSGT00950000183074.C	ENSGT00940000156913.b.j.b	ENSGT00390000008042.A.b.c	ENSGT00390000015352	ENSGT00940000154846.a.b	ENSGT01090000259987.a.a.a.p	ENSGT00940000160205	ENSGT00530000063686.a.a #17	ENSGT00390000015050.`b.a #22
Channel bull blenny	MODERN SPECIES	13	TMPRSS3 (ENSCGOG00000010336)	ENSCGOG00000010335	ccdc93 (ENSCGOG00000010209)	si:dkey-251i10.3 (ENSCGOG00000010203)	insig2 (ENSCGOG00000010172)	EN1 (ENSCGOG00000010167)	ENSCGOG00000010165	ENSCGOG00000010164	C1QL2 (ENSCGOG00000010160)	ENSCGOG00000010158	zgc:101851 (ENSCGOG00000010150)	DBI (ENSCGOG00000010149)	ENSCGOG00000009961	UBXN4 (ENSCGOG00000009890)	ENSCGOG00000009875 #17	mmadhcb (ENSCGOG00000009872) #22	ENSCGOG00000009868	ENSCGOG00000009860	ENSCGOG00000009856	ENSCGOG00000009851	ENSCGOG00000009849	ENSCGOG00000009846	ENSCGOG00000009839	ENSCGOG00000009827	ENSCGOG00000009824	ENSCGOG00000009811	ENSCGOG00000009808	ENSCGOG00000009804	ENSCGOG00000009795	ENSCGOG00000009792	ENSCGOG00000009783
Pike perch	MODERN SPECIES	80	wdr4 (ENSSLUG00000012108)	ENSSLUG00000012103	ENSSLUG00000015028	pknox1.1 (ENSSLUG00000015024)	TMPRSS3 (ENSSLUG00000015014)	ENSSLUG00000015006	ccdc93 (ENSSLUG00000014346)	si:dkey-251i10.3 (ENSSLUG00000014282)	insig2 (ENSSLUG00000014155)	EN1 (ENSSLUG00000014137)	MARCO (ENSSLUG00000014133)	C1QL2 (ENSSLUG00000014128)	ENSSLUG00000012780	ENSSLUG00000012717	ENSSLUG00000012702 #17	mmadhcb (ENSSLUG00000012693) #22	DBI (ENSSLUG00000012687)	zgc:101851 (ENSSLUG00000012683)	STEAP3 (ENSSLUG00000012681)	ENSSLUG00000010192	ENSSLUG00000010088	ENSSLUG00000010046	wdr75 (ENSSLUG00000009995)	slc40a1 (ENSSLUG00000009979)	ENSSLUG00000009978	asnsd1 (ENSSLUG00000009974)	zgc:136439 (ENSSLUG00000009967)	SYMPK (ENSSLUG00000006899)	SLC35F5 (ENSSLUG00000006776)	ENSSLUG00000006764	LYPD1 (ENSSLUG00000006759)
Eupecaria_C	ANCESTRAL SPECIES	88													ENSGT01090000259987.a.a.a.p	ENSGT00940000160205	ENSGT00530000063686.a.a #17	ENSGT00390000015050.`b.a #22
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	118													ENSGT01090000259987.a.a.a.p	ENSGT00940000160205	ENSGT00530000063686.a.a #17	ENSGT00390000015050.`b.a #22
European seabass	MODERN SPECIES	5	ENSDLAG00005029941	ENSDLAG00005031009	ENSDLAG00005032890	ENSDLAG00005016363	ENSDLAG00005004352	ENSDLAG00005032257	ENSDLAG00005034710	ENSDLAG00005032992	ENSDLAG00005027743	ENSDLAG00005028525	ENSDLAG00005033842	ENSDLAG00005013672	ENSDLAG00005026886	ENSDLAG00005014936 #17	ENSDLAG00005029406	ENSDLAG00005014957 #22	ENSDLAG00005030478	ENSDLAG00005021464	ENSDLAG00005032357	ENSDLAG00005019035	ENSDLAG00005029411	ENSDLAG00005019786	ENSDLAG00005028890	ENSDLAG00005033415	ENSDLAG00005026728	ENSDLAG00005019125	ENSDLAG00005011209	ENSDLAG00005004935	ENSDLAG00005031010	ENSDLAG00005004929	ENSDLAG00005006710
Large yellow croaker	MODERN SPECIES	490	hvcn1 (ENSLCRG00005005767)	ENSLCRG00005005769	ENSLCRG00005005774	nkx1.2lb (ENSLCRG00005005775)	uvssa (ENSLCRG00005005780)	lrrc40 (ENSLCRG00005005789)	ENSLCRG00005005795	ENSLCRG00005005796	ccdc80 (ENSLCRG00005005798)	slc35a5 (ENSLCRG00005005802)	f5 (ENSLCRG00005006000)	rgcc (ENSLCRG00005006031)	ITGB2 (ENSLCRG00005006044)	ENSLCRG00005006148	ENSLCRG00005006188 #17	mmadhcb (ENSLCRG00005006189) #22	ENSLCRG00005006192	ENSLCRG00005006193	efhc2 (ENSLCRG00005006197)	fundc1 (ENSLCRG00005006206)	fundc1 (ENSLCRG00005006213)	KDM6A (ENSLCRG00005006258)	ABCB6 (ENSLCRG00005008329)	KALRN (ENSLCRG00005008425)	ahr1b (ENSLCRG00005009236)	ahr2 (ENSLCRG00005009240)	ndufa10 (ENSLCRG00005009244)	ENSLCRG00005009334	ENSLCRG00005012332	ENSLCRG00005012352	ENSLCRG00005013343
Gilthead seabream	MODERN SPECIES	23	ENSSAUG00010013862	ENSSAUG00010013861	ENSSAUG00010010812	ENSSAUG00010010798	ENSSAUG00010010797	sh3bp4 (ENSSAUG00010010793)	ENSSAUG00010010790	ENSSAUG00010010787	ENSSAUG00010010786	ENSSAUG00010010783	ENSSAUG00010010775	ENSSAUG00010010768	ENSSAUG00010010762 #17	DBI (ENSSAUG00010010760)	ENSSAUG00010010755	mmadhcb (ENSSAUG00010010753) #22	ENSSAUG00010010752	ENSSAUG00010010751	ENSSAUG00010010745	ENSSAUG00010010743	ENSSAUG00010010742	ENSSAUG00010010352	ENSSAUG00010010334	GPR82 (ENSSAUG00010010330)	gpr34b (ENSSAUG00010010328)	CASK (ENSSAUG00010003662)	nyx (ENSSAUG00010003548)	ddx3xa (ENSSAUG00010002403)	ENSSAUG00010002377	ENSSAUG00010002375	nup35 (ENSSAUG00010002373)
Pinecone sodierfish	MODERN SPECIES	13	tfcp2l1 (ENSMMDG00005014079)	clasp1a (ENSMMDG00005013471)	nifk (ENSMMDG00005013436)	ENSMMDG00005013433	fhip1b (ENSMMDG00005013219)	CNGA4 (ENSMMDG00005013202)	TRAPPC10 (ENSMMDG00005012522)	ENSMMDG00005012507	rab3gap1 (ENSMMDG00005011588)	R3HDM1 (ENSMMDG00005011316)	UBXN4 (ENSMMDG00005011306)	ENSMMDG00005011302	ENSMMDG00005011298 #17	rnd3b (ENSMMDG00005011291) #20	rnd3b (ENSMMDG00005011278) #20	mmadhcb (ENSMMDG00005011275) #22	LYPD6 (ENSMMDG00005011272) #25	lypd6b (ENSMMDG00005011268) #26	ENSMMDG00005011265	ENSMMDG00005011260	ENSMMDG00005011255	KIF5C (ENSMMDG00005011244) #27	epc2 (ENSMMDG00005011233) #29	acvr2aa (ENSMMDG00005011102) #32	zeb2a (ENSMMDG00005011016)	gtdc1 (ENSMMDG00005011009)	ENSMMDG00005011004	arhgap15 (ENSMMDG00005010999)	ENSMMDG00005010997
Cod	MODERN SPECIES	12	ENSGMOG00000001477	ENSGMOG00000001333	ENSGMOG00000003578	ENSGMOG00000003590	ENSGMOG00000003612	ENSGMOG00000006042	ENSGMOG00000000660	ENSGMOG00000023772	ENSGMOG00000028916	ENSGMOG00000034621	ENSGMOG00000011217	ENSGMOG00000011231	ENSGMOG00000011207 #17	RND3 (ENSGMOG00000011197) #20	rnd3b (ENSGMOG00000026348) #20	MMADHC (ENSGMOG00000011181) #22	LYPD6 (ENSGMOG00000034422) #25	LYPD6B (ENSGMOG00000025667) #26	KIF5C (ENSGMOG00000011375) #27	epc2 (ENSGMOG00000013936) #29	ENSGMOG00000013896 #30	acvr2aa (ENSGMOG00000036028) #32	zeb2a (ENSGMOG00000028351)	gtdc1 (ENSGMOG00000010251)	arhgap15 (ENSGMOG00000012779)	ENSGMOG00000025469	ENSGMOG00000001873	ENSGMOG00000027698	ENSGMOG00000001883	ENSGMOG00000004804	ENSGMOG00000036567
Protacanthopterygii	ANCESTRAL SPECIES	18	ENSGT00940000156353.u.a	ENSGT00940000159094.f	ENSGT00390000001170.a.a	ENSGT00490000043417	ENSGT00940000155759.e.a	ENSGT00940000160383	ENSGT01030000234607.A.a.a.a.d	ENSGT00390000006705	ENSGT00940000156095.m.b	ENSGT00940000160205	ENSGT00940000165390.a	ENSGT00940000154311.b	ENSGT00530000063686.a.a #17	ENSGT00940000157541.f.c #20	ENSGT00940000157541.f.d #20	ENSGT00390000015050.`b.a #22	ENSGT00390000000220.B.c.b #25	ENSGT00390000000220.A #26	ENSGT00940000158539.a.e #27	ENSGT00940000158526 #29	ENSGT00940000157233.d #32	ENSGT00950000183208.A.c.b	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00940000160639.b.a.b.b.b	ENSGT00390000013151.a.a.b	ENSGT00940000160532.h	ENSGT00510000049102	ENSGT00390000016151	ENSGT00940000154486.b.a.a.b.e.a.a.a	ENSGT00940000154486.b.b.a.b
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	7	ENSGT00940000156332.q	ENSGT00940000157211.l.a	ENSGT00390000010354.c	ENSGT00940000156353.u.a.a	ENSGT00940000159094.f.a	ENSGT00390000001170.a.a.d.a	ENSGT00940000155759.e.a.b	ENSGT00940000160383	ENSGT01030000234607.A.a.a.a.d	ENSGT00390000006705.g	ENSGT00940000156095.m.b.a	ENSGT00940000160205.c	ENSGT00940000165390.a.k	ENSGT00940000157541.f.c.b #20	ENSGT00940000157541.f.d.c #20	ENSGT00390000015050.`b.a.e #22	ENSGT00390000000220.B.c.b.a #25	ENSGT00390000000220.A.c #26	ENSGT00940000158539.a.e #27	ENSGT00940000158526.s #29	ENSGT00530000064137.a.b.u.a #30	ENSGT00940000157233.d.g #32	ENSGT00950000183208.A.c.b.e	ENSGT00390000006631	ENSGT00950000182860.a.b.b.c	ENSGT00940000160639.b.a.b.b.b.a	ENSGT00390000013151.a.a.b.c	ENSGT00940000160532.h.c.b	ENSGT00940000160532.h.c.a	ENSGT00390000016151.g	ENSGT00940000154486.b.a.a.b.e.a.a.a.d
Salmoninae_a	ANCESTRAL SPECIES		ENSGT00940000156332.q	ENSGT00940000157211.l.a	ENSGT00390000010354.c	ENSGT00940000156353.u.a.a	ENSGT00940000159094.f.a	ENSGT00390000001170.a.a.d.a	ENSGT00940000155759.e.a.b	ENSGT00940000160383	ENSGT01030000234607.A.a.a.a.d	ENSGT00390000006705.g	ENSGT00940000156095.m.b.a	ENSGT00940000160205.c	ENSGT00940000165390.a.k	ENSGT00940000157541.f.c.b #20	ENSGT00940000157541.f.d.c #20	ENSGT00390000015050.`b.a.e #22	ENSGT00390000000220.B.c.b.a #25	ENSGT00390000000220.A.c #26	ENSGT00940000158539.a.e #27	ENSGT00940000158526.s #29	ENSGT00530000064137.a.b.u.a #30	ENSGT00940000157233.d.g #32	ENSGT00950000183208.A.c.b.e	ENSGT00390000006631	ENSGT00950000182860.a.b.b.c	ENSGT00940000160639.b.a.b.b.b.a	ENSGT00390000013151.a.a.b.c	ENSGT00940000160532.h.c.b	ENSGT00940000160532.h.c.a	ENSGT00390000016151.g	ENSGT00940000154486.b.a.a.b.e.a.a.a.d
Salmo	ANCESTRAL SPECIES	15	ENSGT00940000156332.q	ENSGT00940000157211.l.a	ENSGT00390000010354.c	ENSGT00940000156353.u.a.a	ENSGT00940000159094.f.a	ENSGT00390000001170.a.a.d.a	ENSGT00940000155759.e.a.b	ENSGT00940000160383	ENSGT01030000234607.A.a.a.a.d	ENSGT00390000006705.g	ENSGT00940000156095.m.b.a	ENSGT00940000160205.c	ENSGT00940000165390.a.k	ENSGT00940000157541.f.c.b #20	ENSGT00940000157541.f.d.c #20	ENSGT00390000015050.`b.a.e #22	ENSGT00390000000220.B.c.b.a #25	ENSGT00390000000220.A.c #26	ENSGT00940000158539.a.e #27	ENSGT00940000158526.s #29	ENSGT00530000064137.a.b.u.a #30	ENSGT00940000157233.d.g #32	ENSGT00950000183208.A.c.b.e	ENSGT00390000006631	ENSGT00950000182860.a.b.b.c	ENSGT00940000160639.b.a.b.b.b.a	ENSGT00390000013151.a.a.b.c	ENSGT00940000160532.h.c.b	ENSGT00940000160532.h.c.a	ENSGT00390000016151.g	ENSGT00940000154486.b.a.a.b.e.a.a.a.d
River trout	MODERN SPECIES	16	epb41l5 (ENSSTUG00000010250)	ptpn4a (ENSSTUG00000010013)	tmem177 (ENSSTUG00000009990)	MRAS (ENSSTUG00000009970)	pth2ra (ENSSTUG00000009752)	tmem163a (ENSSTUG00000009717)	ccnt2a (ENSSTUG00000009693)	ENSSTUG00000009678	ENSSTUG00000009662	rab3gap1 (ENSSTUG00000007748)	R3HDM1 (ENSSTUG00000007546)	UBXN4 (ENSSTUG00000007495)	ENSSTUG00000007463	RND3 (ENSSTUG00000007449) #20	rnd3b (ENSSTUG00000007411) #20	mmadhcb (ENSSTUG00000007371) #22	LYPD6 (ENSSTUG00000007362) #25	lypd6b (ENSSTUG00000007354) #26	KIF5C (ENSSTUG00000006973) #27	epc2 (ENSSTUG00000006897) #29	MBD5 (ENSSTUG00000006873) #30	acvr2aa (ENSSTUG00000006425) #32	zeb2a (ENSSTUG00000006336)	gtdc1 (ENSSTUG00000006293)	arhgap15 (ENSSTUG00000006192)	ADPRH (ENSSTUG00000006167)	ARL4C (ENSSTUG00000006163)	sh3bp4 (ENSSTUG00000006143)	ENSSTUG00000003287	ENSSTUG00000050934	ndufa10 (ENSSTUG00000050924)
Atlantic salmon	MODERN SPECIES	17	epb41l5 (ENSSSAG00000048574)	ptpn4a (ENSSSAG00000046847)	tmem177 (ENSSSAG00000046807)	ENSSSAG00000046799	pth2ra (ENSSSAG00000046672)	ENSSSAG00000046636	ENSSSAG00000046447	ccnt2a (ENSSSAG00000046498)	ENSSSAG00000046434	RAB3GAP1 (ENSSSAG00000046103)	R3HDM1 (ENSSSAG00000045633)	UBXN4 (ENSSSAG00000113024)	ENSSSAG00000081672	RND3 (ENSSSAG00000120060) #20	ENSSSAG00000113399 #20	CB025 (ENSSSAG00000081667) #22	LYPD6 (ENSSSAG00000106558) #25	KIF5C (ENSSSAG00000081647) #27	epc2 (ENSSSAG00000081641) #29	MBD5 (ENSSSAG00000081639) #30	acvr2aa (ENSSSAG00000081630) #32	zeb2a (ENSSSAG00000081619)	gtdc1 (ENSSSAG00000081613)	RHG15 (ENSSSAG00000081610)	adprh (ENSSSAG00000081606)	ENSSSAG00000102975	ENSSSAG00000109819	sh3bp4 (ENSSSAG00000081600)	ENSSSAG00000069294	ENSSSAG00000081555	ENSSSAG00000081497
Oncorhynchus	ANCESTRAL SPECIES	3	ENSGT00940000157211.l.a	ENSGT01000000221562	ENSGT00940000156353.u.a.a	ENSGT00940000159094.f.a	ENSGT00390000001170.a.a.d.a	ENSGT00940000155759.e.a.b	ENSGT00940000160383	ENSGT01030000234607.A.a.a.a.d	ENSGT00390000006705.g	ENSGT00940000156095.m.b.a	ENSGT00940000160205.c	ENSGT00940000165390.a.k	ENSGT01010000222294.c.b.b.b.c.a.a.b.a.a	ENSGT00940000157541.f.c.b #20	ENSGT00940000157541.f.d.c #20	ENSGT00390000015050.`b.a.e #22	ENSGT00390000000220.B.c.b.a #25	ENSGT00390000000220.A.c #26	ENSGT00940000158539.a.e #27	ENSGT00940000158526.s #29	ENSGT00530000064137.a.b.u.a #30	ENSGT00940000157233.d.g #32	ENSGT00950000183208.A.c.b.e	ENSGT00390000006631	ENSGT00950000182860.a.b.b.c	ENSGT00940000160639.b.a.b.b.b.a	ENSGT00390000013151.a.a.b.c	ENSGT00940000160532.h.c.b	ENSGT00940000160532.h.c.a	ENSGT00390000016151.g	ENSGT00940000154486.b.a.a.b.e.a.a.a.d
Oncorhynchus_a	ANCESTRAL SPECIES	8	ENSGT00940000157211.l.a	ENSGT01000000221562	ENSGT00940000156353.u.a.a	ENSGT00940000159094.f.a	ENSGT00390000001170.a.a.d.a	ENSGT00940000155759.e.a.b	ENSGT00940000160383	ENSGT01030000234607.A.a.a.a.d.a	ENSGT00390000006705.g	ENSGT00940000156095.m.b.a	ENSGT00940000160205.c	ENSGT00940000165390.a.k	ENSGT01010000222294.c.b.b.b.c.a.a.b.a.a	ENSGT00940000157541.f.c.b #20	ENSGT00940000157541.f.d.c #20	ENSGT00390000015050.`b.a.e #22	ENSGT00390000000220.B.c.b.a #25	ENSGT00390000000220.A.c #26	ENSGT00940000158539.a.e #27	ENSGT00940000158526.s #29	ENSGT00530000064137.a.b.u.a #30	ENSGT00940000157233.d.g #32	ENSGT00950000183208.A.c.b.e	ENSGT00390000006631	ENSGT00950000182860.a.b.b.c	ENSGT00940000160639.b.a.b.b.b.a	ENSGT00390000013151.a.a.b.c	ENSGT00940000160532.h.c.b	ENSGT00940000160532.h.c.a	ENSGT00390000016151.g	ENSGT00940000154486.b.a.a.b.e.a.a.a.d
Coho salmon	MODERN SPECIES	11	ptpn4a (ENSOKIG00005048629)	ENSOKIG00005048615	MRAS (ENSOKIG00005048612)	pth2ra (ENSOKIG00005048295)	tmem163a (ENSOKIG00005048250)	ccnt2a (ENSOKIG00005048237)	ENSOKIG00005048227	ENSOKIG00005048220	rab3gap1 (ENSOKIG00005047115)	R3HDM1 (ENSOKIG00005047043)	UBXN4 (ENSOKIG00005047036)	ENSOKIG00005047027	ENSOKIG00005047017	rnd3b (ENSOKIG00005047005) #20	rnd3b (ENSOKIG00005046975) #20	mmadhcb (ENSOKIG00005046956) #22	LYPD6 (ENSOKIG00005046950) #25	lypd6b (ENSOKIG00005046945) #26	KIF5C (ENSOKIG00005046928) #27	epc2 (ENSOKIG00005046899) #29	MBD5 (ENSOKIG00005046883) #30	acvr2aa (ENSOKIG00005046477) #32	zeb2a (ENSOKIG00005046434)	gtdc1 (ENSOKIG00005046420)	arhgap15 (ENSOKIG00005046394)	ADPRH (ENSOKIG00005046379)	ARL4C (ENSOKIG00005046372)	ENSOKIG00005046369	sh3bp4 (ENSOKIG00005046356)	ENSOKIG00005043752	ENSOKIG00005041362
Chinook salmon	MODERN SPECIES	22	ube2f (ENSOTSG00005014729)	ramp1 (ENSOTSG00005014727)	epb41l5 (ENSOTSG00005014721)	ptpn4a (ENSOTSG00005014710)	MRAS (ENSOTSG00005014704)	pth2ra (ENSOTSG00005014702)	tmem163a (ENSOTSG00005014699)	ccnt2a (ENSOTSG00005014680)	ENSOTSG00005014676	ENSOTSG00005014674	rab3gap1 (ENSOTSG00005011394)	R3HDM1 (ENSOTSG00005011386)	ubxn4 (ENSOTSG00005011381)	RND3 (ENSOTSG00005011379) #20	rnd3b (ENSOTSG00005011378) #20	mmadhcb (ENSOTSG00005011375) #22	LYPD6 (ENSOTSG00005011371) #25	lypd6b (ENSOTSG00005011368) #26	KIF5C (ENSOTSG00005011365) #27	ENSOTSG00005011347 #29	acvr2aa (ENSOTSG00005010288) #32	zeb2a (ENSOTSG00005010263)	gtdc1 (ENSOTSG00005010262)	arhgap15 (ENSOTSG00005010259)	ADPRH (ENSOTSG00005010248)	ARL4C (ENSOTSG00005010246)	sh3bp4 (ENSOTSG00005010245)	ENSOTSG00005009276	ENSOTSG00005001354	ndufa10 (ENSOTSG00005026790)	ENSOTSG00005026789
Rainbow trout	MODERN SPECIES	21	ENSOMYG00000074564	ENSOMYG00000015337	ENSOMYG00000067741	pth2ra (ENSOMYG00000013458)	tmem163a (ENSOMYG00000013166)	CCNT2 (ENSOMYG00000013118)	ENSOMYG00000013106	ENSOMYG00000013082	RAB3GAP1 (ENSOMYG00000010724)	R3HDM1 (ENSOMYG00000006736)	UBXN4 (ENSOMYG00000006585)	ENSOMYG00000006412	ENSOMYG00000006220	RND3 (ENSOMYG00000006168) #20	rnd3b (ENSOMYG00000006108) #20	MMADHC (ENSOMYG00000006042) #22	LYPD6 (ENSOMYG00000005970) #25	lypd6b (ENSOMYG00000005960) #26	KIF5C (ENSOMYG00000005533) #27	epc2 (ENSOMYG00000004870) #29	MBD5 (ENSOMYG00000004808) #30	acvr2aa (ENSOMYG00000004736) #32	ENSOMYG00000030635	zeb2a (ENSOMYG00000004579)	gtdc1 (ENSOMYG00000004521)	arhgap15 (ENSOMYG00000004463)	ENSOMYG00000077737	ENSOMYG00000004346	ENSOMYG00000062109	ENSOMYG00000073609	ENSOMYG00000004236
Huchen	MODERN SPECIES	298					ENSHHUG00000013926	ccnt2a (ENSHHUG00000013919)	ENSHHUG00000013872	ENSHHUG00000013868	rab3gap1 (ENSHHUG00000013783)	R3HDM1 (ENSHHUG00000013711)	UBXN4 (ENSHHUG00000013687)	ENSHHUG00000013682	ENSHHUG00000013683	RND3 (ENSHHUG00000013670) #20	rnd3b (ENSHHUG00000013649) #20	mmadhcb (ENSHHUG00000013635) #22	LYPD6 (ENSHHUG00000013630) #25	lypd6b (ENSHHUG00000013621) #26	KIF5C (ENSHHUG00000013341) #27	epc2 (ENSHHUG00000013333) #29	MBD5 (ENSHHUG00000013301) #30	acvr2aa (ENSHHUG00000013059) #32
Salmoninae	ANCESTRAL SPECIES	823															ENSGT00940000157541.f.d.d #20	ENSGT00390000015050.`b.a.f #22	ENSGT00390000000220.B.c.b.b #25	ENSGT00390000000220.A.d #26	ENSGT00940000158539.a.f #27	ENSGT00940000158526.t #29	ENSGT00530000064137.a.b.u.b #30	ENSGT00940000157233.d.h #32	ENSGT00950000183208.A.c.b.f
Salmoninae_a	ANCESTRAL SPECIES		ENSGT00940000157211.l.b	ENSGT00390000010354.d	ENSGT00940000156353.u.a.b	ENSGT00940000159094.f.b	ENSGT00390000001170.a.a.d.b.a	ENSGT00490000043417	ENSGT00940000155759.e.a.a	ENSGT00390000006705.h	ENSGT00940000156095.m.b.b	ENSGT00940000160205.d	ENSGT00940000165390.a.l	ENSGT00940000154311.b	ENSGT00530000063686.a.a #17	ENSGT00940000157541.f.c.a #20	ENSGT00940000157541.f.d.d #20	ENSGT00390000015050.`b.a.f #22	ENSGT00390000000220.B.c.b.b #25	ENSGT00390000000220.A.d #26	ENSGT00940000158526.t #29	ENSGT00530000064137.a.b.u.b #30	ENSGT00940000157233.d.h #32	ENSGT00950000183208.A.c.b.f	ENSGT00950000182860.a.b.b.d	ENSGT00940000166921.a	ENSGT00940000160639.b.a.b.b.b.b	ENSGT00390000013151.a.a.b.d	ENSGT00530000065251.m.a	ENSGT00940000160532.h.d.b	ENSGT00950000182977.B.b.b.d	ENSGT00940000160532.h.d.a	ENSGT00510000049102.c
Oncorhynchus	ANCESTRAL SPECIES	13	ENSGT00940000156332.r	ENSGT00940000157211.l.b	ENSGT00390000010354.d	ENSGT00940000156353.u.a.b	ENSGT00940000159094.f.b	ENSGT00390000001170.a.a.d.b.a	ENSGT00490000043417.f	ENSGT00940000155759.e.a.a	ENSGT00390000006705.h	ENSGT00940000156095.m.b.b	ENSGT00940000160205.d	ENSGT00940000165390.a.l	ENSGT00530000063686.a.a #17	ENSGT00940000157541.f.c.a #20	ENSGT00940000157541.f.d.d #20	ENSGT00390000015050.`b.a.f #22	ENSGT00390000000220.B.c.b.b #25	ENSGT00390000000220.A.d #26	ENSGT00940000158526.t #29	ENSGT00530000064137.a.b.u.b #30	ENSGT00940000157233.d.h #32	ENSGT00950000183208.A.c.b.f	ENSGT00950000182860.a.b.b.d	ENSGT00940000166921.a	ENSGT00940000160639.b.a.b.b.b.b.c	ENSGT00940000160639.b.a.b.b.b.b.d	ENSGT00390000013151.a.a.b.d	ENSGT00530000065251.m.a	ENSGT00940000160532.h.d.b	ENSGT00950000182977.B.b.b.d	ENSGT00940000160532.h.d.a
Oncorhynchus_a	ANCESTRAL SPECIES	11	ENSGT00940000159224.a.b	ENSGT00940000156332.r	ENSGT00940000157211.l.b	ENSGT00390000010354.d	ENSGT00940000156353.u.a.b	ENSGT00940000159094.f.b	ENSGT00390000001170.a.a.d.b.a	ENSGT00490000043417.f	ENSGT00940000155759.e.a.a	ENSGT00940000156095.m.b.b	ENSGT00940000160205.d	ENSGT00940000165390.a.l	ENSGT00530000063686.a.a #17	ENSGT00940000157541.f.c.a #20	ENSGT00940000157541.f.d.d #20	ENSGT00390000015050.`b.a.f #22	ENSGT00390000000220.B.c.b.b #25	ENSGT00390000000220.A.d #26	ENSGT00940000158526.t #29	ENSGT00530000064137.a.b.u.b #30	ENSGT00940000157233.d.h #32	ENSGT00950000183208.A.c.b.f	ENSGT00950000182860.a.b.b.d	ENSGT00940000166921.a	ENSGT00940000160639.b.a.b.b.b.b.c	ENSGT00940000160639.b.a.b.b.b.b.d	ENSGT00390000013151.a.a.b.d	ENSGT00390000015709.c	ENSGT00940000156180.e.f	ENSGT00390000001225.t.b	ENSGT00390000005581.a.f
Chinook salmon	MODERN SPECIES	18	ramp1 (ENSOTSG00005015728)	epb41l5 (ENSOTSG00005015993)	ptpn4a (ENSOTSG00005016024)	tmem177 (ENSOTSG00005016029)	MRAS (ENSOTSG00005016034)	pth2ra (ENSOTSG00005016041)	tmem163a (ENSOTSG00005016062)	acmsd (ENSOTSG00005016089)	ccnt2a (ENSOTSG00005016099)	R3HDM1 (ENSOTSG00005016395)	UBXN4 (ENSOTSG00005016473)	ENSOTSG00005016515	NMI (ENSOTSG00005016516) #17	RND3 (ENSOTSG00005016521) #20	rnd3b (ENSOTSG00005016522) #20	mmadhcb (ENSOTSG00005016523) #22	LYPD6 (ENSOTSG00005016524) #25	lypd6b (ENSOTSG00005016525) #26	ENSOTSG00005016567	epc2 (ENSOTSG00005016572) #29	ENSOTSG00005016802 #30	acvr2aa (ENSOTSG00005016807) #32	ENSOTSG00005016852	ENSOTSG00005016853	zeb2a (ENSOTSG00005016854)	arhgap15 (ENSOTSG00005016855)	ENSOTSG00005016858	ARL4C (ENSOTSG00005017066)	ARL4C (ENSOTSG00005017067)	SH3BP4 (ENSOTSG00005017069)	ENSOTSG00005017071
Coho salmon	MODERN SPECIES	18	epb41l5 (ENSOKIG00005024768)	ptpn4a (ENSOKIG00005024895)	tmem177 (ENSOKIG00005025174)	MRAS (ENSOKIG00005025188)	ENSOKIG00005025223	pth2ra (ENSOKIG00005025342)	tmem163a (ENSOKIG00005026171)	acmsd (ENSOKIG00005026186)	ccnt2a (ENSOKIG00005026326)	R3HDM1 (ENSOKIG00005027587)	UBXN4 (ENSOKIG00005027938)	ENSOKIG00005028009	NMI (ENSOKIG00005028048) #17	RND3 (ENSOKIG00005028077) #20	rnd3b (ENSOKIG00005028093) #20	MMADHC (ENSOKIG00005028095) #22	LYPD6 (ENSOKIG00005028106) #25	lypd6b (ENSOKIG00005028112) #26	epc2 (ENSOKIG00005028162) #29	ENSOKIG00005029006 #30	acvr2aa (ENSOKIG00005029043) #32	ENSOKIG00005029214	zeb2a (ENSOKIG00005029225)	ENSOKIG00005029292	ENSOKIG00005029303	arhgap15 (ENSOKIG00005029335)	ENSOKIG00005029400	ENSOKIG00005029416	ARL4C (ENSOKIG00005029427)	ENSOKIG00005029435	SH3BP4 (ENSOKIG00005029441)
Rainbow trout	MODERN SPECIES	14	tmem177 (ENSOMYG00000022629)	ENSOMYG00000022634	pth2ra (ENSOMYG00000022669)	ENSOMYG00000056305	tmem163a (ENSOMYG00000054933)	ENSOMYG00000076179	acmsd (ENSOMYG00000022727)	ccnt2a (ENSOMYG00000022903)	RAB3GAP1 (ENSOMYG00000023855)	ENSOMYG00000024045	ENSOMYG00000024209	ENSOMYG00000024282	NMI (ENSOMYG00000024338) #17	RND3 (ENSOMYG00000024351) #20	rnd3b (ENSOMYG00000024432) #20	MMADHC (ENSOMYG00000024468) #22	LYPD6 (ENSOMYG00000024481) #25	LYPD6B (ENSOMYG00000024505) #26	ENSOMYG00000048707	epc2 (ENSOMYG00000024755) #29	ENSOMYG00000025244	ENSOMYG00000025274 #30	acvr2aa (ENSOMYG00000025406) #32	ENSOMYG00000072394	ENSOMYG00000060224	zeb2a (ENSOMYG00000025728)	arhgap15 (ENSOMYG00000025805)	ENSOMYG00000068933	ENSOMYG00000025873	ENSOMYG00000068371	ENSOMYG00000025966
Salmo	ANCESTRAL SPECIES	10	ENSGT00940000157211.l.b	ENSGT00390000010354.d	ENSGT00940000156353.u.a.b	ENSGT00940000159094.f.b	ENSGT00390000001170.a.a.d.b.a	ENSGT00490000043417	ENSGT00940000155759.e.a.a	ENSGT00390000006705.h	ENSGT00940000156095.m.b.b	ENSGT00940000160205.d	ENSGT00940000165390.a.l	ENSGT00940000154311.b	ENSGT00530000063686.a.a #17	ENSGT00940000157541.f.c.a #20	ENSGT00940000157541.f.d.d #20	ENSGT00390000015050.`b.a.f #22	ENSGT00390000000220.B.c.b.b #25	ENSGT00390000000220.A.d #26	ENSGT00940000158526.t #29	ENSGT00530000064137.a.b.u.b #30	ENSGT00940000157233.d.h #32	ENSGT00950000183208.A.c.b.f	ENSGT00950000182860.a.b.b.d	ENSGT00940000166921.a	ENSGT00940000160639.b.a.b.b.b.b	ENSGT00390000013151.a.a.b.d	ENSGT00530000065251.m.a	ENSGT00940000160532.h.d.b	ENSGT00950000182977.B.b.b.d	ENSGT00940000160532.h.d.a	ENSGT00390000016151.h
River trout	MODERN SPECIES	12	MRAS (ENSSTUG00000009578)	ENSSTUG00000009573	pth2ra (ENSSTUG00000009522)	tmem163a (ENSSTUG00000009488)	acmsd (ENSSTUG00000009455)	ccnt2a (ENSSTUG00000008835)	ENSSTUG00000008815	rab3gap1 (ENSSTUG00000008774)	R3HDM1 (ENSSTUG00000008585)	UBXN4 (ENSSTUG00000008518)	ENSSTUG00000008509	ENSSTUG00000008483	ENSSTUG00000008475 #17	rnd3b (ENSSTUG00000008458) #20	rnd3b (ENSSTUG00000008422) #20	mmadhcb (ENSSTUG00000008410) #22	LYPD6 (ENSSTUG00000008403) #25	lypd6b (ENSSTUG00000008381) #26	epc2 (ENSSTUG00000008327) #29	ENSSTUG00000008313 #30	acvr2aa (ENSSTUG00000007939) #32	zeb2a (ENSSTUG00000007798)	arhgap15 (ENSSTUG00000007723)	ENSSTUG00000007661	ARL4C (ENSSTUG00000007658)	ENSSTUG00000007651	sh3bp4 (ENSSTUG00000007637)	ENSSTUG00000007626	ENSSTUG00000007613	ENSSTUG00000005465	ENSSTUG00000005317
Atlantic salmon	MODERN SPECIES	13	ENSSSAG00000083373	pth2ra (ENSSSAG00000056014)	ENSSSAG00000048219	tmem163a (ENSSSAG00000056075)	acmsd (ENSSSAG00000056085)	ENSSSAG00000102085	ccnt2a (ENSSSAG00000056134)	RAB3GAP1 (ENSSSAG00000057384)	ENSSSAG00000086017	r3hdm1 (ENSSSAG00000057435)	ubxn4 (ENSSSAG00000081673)	ENSSSAG00000057802	ENSSSAG00000057832 #17	RND3 (ENSSSAG00000057846) #20	rnd3b (ENSSSAG00000057861) #20	MMADHC (ENSSSAG00000057873) #22	LYPD6 (ENSSSAG00000057885) #25	LYPD6B (ENSSSAG00000117020) #26	epc2 (ENSSSAG00000057918) #29	ENSSSAG00000058136 #30	ACVR2A (ENSSSAG00000058221) #32	ENSSSAG00000116492	zeb2a (ENSSSAG00000063282)	ENSSSAG00000104017	ENSSSAG00000121595	ENSSSAG00000097835	rhg15 (ENSSSAG00000063302)	ENSSSAG00000063341	ENSSSAG00000114450	ENSSSAG00000063499	ENSSSAG00000114515
Huchen	MODERN SPECIES	1011																mmadhcb (ENSHHUG00000049459) #22	LYPD6 (ENSHHUG00000049454) #25	lypd6b (ENSHHUG00000049451) #26	ENSHHUG00000049445 #27	epc2 (ENSHHUG00000049442) #29	MBD5 (ENSHHUG00000049432) #30	acvr2aa (ENSHHUG00000049259) #32	EFCC1 (ENSHHUG00000049254)	ENSHHUG00000049251
Northern pike	MODERN SPECIES	15	ptpn4a (ENSELUG00000005149)	tmem177 (ENSELUG00000005098)	MRAS (ENSELUG00000005090)	pth2ra (ENSELUG00000005063)	tmem163a (ENSELUG00000000142)	acmsd (ENSELUG00000005010)	ccnt2a (ENSELUG00000004981)	ENSELUG00000004966	rab3gap1 (ENSELUG00000004956)	R3HDM1 (ENSELUG00000004909)	UBXN4 (ENSELUG00000004855)	ENSELUG00000004826	ENSELUG00000004778 #17	rnd3b (ENSELUG00000004762) #20	rnd3b (ENSELUG00000004752) #20	mmadhcb (ENSELUG00000004743) #22	LYPD6 (ENSELUG00000025460) #25	lypd6b (ENSELUG00000004706) #26	KIF5C (ENSELUG00000004683) #27	epc2 (ENSELUG00000004633) #29	MBD5 (ENSELUG00000004605) #30	acvr2aa (ENSELUG00000004570) #32	zeb2a (ENSELUG00000004545)	ENSELUG00000027327	gtdc1 (ENSELUG00000004515)	arhgap15 (ENSELUG00000004474)	ADPRH (ENSELUG00000004422)	ARL4C (ENSELUG00000004400)	sh3bp4 (ENSELUG00000004382)	ENSELUG00000004356	ENSELUG00000004224
Otomorpha	ANCESTRAL SPECIES	249										ENSGT00940000160205	ENSGT00940000165390.a	ENSGT00940000154311.b	ENSGT00530000063686.a.a #17	ENSGT00940000157541.f.b #20	ENSGT00940000157541.f.a #20	ENSGT00390000015050.`b.a #22	ENSGT00390000000220.B.c.a #25	ENSGT00390000000220.A #26	ENSGT00940000158539.a #27	ENSGT00940000158526 #29	ENSGT00940000157233.d #32	ENSGT00950000183208.A.c.b	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00940000160639.b.a.b.b.b	ENSGT00390000013151.a.a.b	ENSGT00940000160532.h.b	ENSGT00510000049102	ENSGT00390000016151	ENSGT00940000154486.b.a.a.b.e.a.a.a	ENSGT00940000154486.b.b.a.b
Clupeiformes	ANCESTRAL SPECIES	668																ENSGT00390000015050.`b.a #22	ENSGT00390000000220.B.c.b #25	ENSGT00390000000220.A #26	ENSGT00940000158539.a #27
Atlantic herring	MODERN SPECIES	11	ENSCHAG00000021547	NALF1 (ENSCHAG00000021544)	CCKBR (ENSCHAG00000021472)	pdzk1 (ENSCHAG00000021454)	GPR89B (ENSCHAG00000021151)	st6gal2a (ENSCHAG00000021143)	tmtops2b (ENSCHAG00000021140)	ENSCHAG00000021135	uxs1 (ENSCHAG00000020918)	ecrg4a (ENSCHAG00000020910)	ENSCHAG00000020898	ENSCHAG00000020891	ENSCHAG00000020875	FHL2 (ENSCHAG00000020834)	si:dkeyp-118h3.6 (ENSCHAG00000020826)	mmadhcb (ENSCHAG00000020810) #22	LYPD6 (ENSCHAG00000020799) #25	lypd6b (ENSCHAG00000020782) #26	KIF5C (ENSCHAG00000020504) #27	ENSCHAG00000020483	epc2 (ENSCHAG00000020427) #29	ENSCHAG00000020409 #30	acvr2aa (ENSCHAG00000019235) #32	zeb2a (ENSCHAG00000019144)	gtdc1 (ENSCHAG00000019106)	arhgap15 (ENSCHAG00000019010)	ADPRH (ENSCHAG00000018999)	ARL4C (ENSCHAG00000018993)	sh3bp4 (ENSCHAG00000018981)	ENSCHAG00000018949	ENSCHAG00000016312
Denticle herring	MODERN SPECIES	19	ENSDCDG00000019487	nqo1 (ENSDCDG00000019412)	nqo1 (ENSDCDG00000019386)	ackr3a (ENSDCDG00000019379)	rpe (ENSDCDG00000019375)	ENSDCDG00000019368	MGAT4A (ENSDCDG00000019332)	coa5 (ENSDCDG00000019324)	si:dkey-4e7.3 (ENSDCDG00000019321)	inpp4aa (ENSDCDG00000017310)	MFSD9 (ENSDCDG00000017273)	ENSDCDG00000017272	FHL2 (ENSDCDG00000017270)	ENSDCDG00000017268	ENSDCDG00000017264	mmadhcb (ENSDCDG00000017260) #22	crygm2c (ENSDCDG00000017258)	ENSDCDG00000017256	ENSDCDG00000017254	crygm5 (ENSDCDG00000017253)	ENSDCDG00000017252	etv5a (ENSDCDG00000017179)	esyt3 (ENSDCDG00000017159)	ENSDCDG00000017149	ENSDCDG00000017146	faima (ENSDCDG00000017144)	ENSDCDG00000017142	ENSDCDG00000017141	ndufa10 (ENSDCDG00000017034)	ENSDCDG00000017021	ENSDCDG00000017013
Otophysi	ANCESTRAL SPECIES	228										ENSGT00390000006705	ENSGT00940000160205	ENSGT00940000165390.a	ENSGT00530000063686.a.a #17	ENSGT00940000157541.f.b #20	ENSGT00940000157541.f.a #20	ENSGT00390000015050.`b.a #22	ENSGT00390000000220.B.c.a #25	ENSGT00390000000220.A #26	ENSGT00940000158539.a #27	ENSGT00940000160383	ENSGT00940000155759.e.a	ENSGT00490000043417	ENSGT00390000001170.a.a	ENSGT00940000160639.b.a.b.b.a	ENSGT00390000013151.a.a.b	ENSGT00940000160532.h.b	ENSGT00510000049102	ENSGT00390000016151	ENSGT00940000154486.b.a.a.b.e.a.a.a	ENSGT00940000154486.b.b.a.b	ENSGT00390000007364.i
Characiphysae	ANCESTRAL SPECIES	107		ENSGT00940000155868.f	ENSGT00730000111249.f	ENSGT00950000182860.a.b.b	ENSGT00390000006631	ENSGT00950000183208.A.c.b	ENSGT00940000157233.d #32	ENSGT00940000158526 #29	ENSGT00940000156095.m.b	ENSGT00390000006705	ENSGT00940000160205	ENSGT00940000165390.a	ENSGT00530000063686.a.a #17	ENSGT00940000157541.f.b #20	ENSGT00940000157541.f.a #20	ENSGT00390000015050.`b.a #22	ENSGT00390000000220.B.c.a #25	ENSGT00390000000220.A #26	ENSGT00940000158539.a #27	ENSGT00940000160383.e	ENSGT00940000155759.e.a	ENSGT00490000043417	ENSGT00390000001170.a.a	ENSGT00940000160639.b.a.b.b.a	ENSGT00390000013151.a.a.b	ENSGT00940000160532.h.b	ENSGT00510000049102	ENSGT00390000016151	ENSGT00940000154486.b.a.a.b.e.a.a.a	ENSGT00940000154486.b.b.a.b	ENSGT00390000007364.i
Channel catfish	MODERN SPECIES	25	sec22a (ENSIPUG00000001444)	efnb2a (ENSIPUG00000001518)	arglu1 (ENSIPUG00000001542)	arhgap15 (ENSIPUG00000001559)	gtdc1 (ENSIPUG00000001575)	zeb2a (ENSIPUG00000001605)	acvr2aa (ENSIPUG00000001630) #32	epc2 (ENSIPUG00000001653) #29	R3HDM1 (ENSIPUG00000001676)	rab3gap1 (ENSIPUG00000001801)	UBXN4 (ENSIPUG00000001849)	ENSIPUG00000001876	nmi (ENSIPUG00000001883) #17	RND3 (ENSIPUG00000001902) #20	rnd3b (ENSIPUG00000001926) #20	mmadhcb (ENSIPUG00000001943) #22	Lypd6 (ENSIPUG00000001987) #25	lypd6b (ENSIPUG00000002010) #26	KIF5C (ENSIPUG00000002020) #27	ENSIPUG00000002052	ccnt2a (ENSIPUG00000002060)	acmsd (ENSIPUG00000002076)	tmem163a (ENSIPUG00000002114)	arl4ca (ENSIPUG00000002122)	sh3bp4 (ENSIPUG00000002153)	ENSIPUG00000002184	ENSIPUG00000002238	GYPC (ENSIPUG00000002507)	ndufa10 (ENSIPUG00000002530)	ENSIPUG00000002619	Faim (ENSIPUG00000003869)
Characiphysae_b	ANCESTRAL SPECIES	98		ENSGT00940000155868.f	ENSGT00730000111249.f	ENSGT00950000182860.a.b.b	ENSGT00390000006631	ENSGT00950000183208.A.c.b	ENSGT00940000157233.d #32	ENSGT00940000158526 #29	ENSGT00940000156095.m.b	ENSGT00390000006705	ENSGT00940000160205	ENSGT00940000165390.a	ENSGT00530000063686.a.a #17	ENSGT00940000157541.f.b #20	ENSGT00940000157541.f.a #20	ENSGT00390000015050.`b.a #22	ENSGT00390000000220.B.c.a #25	ENSGT00390000000220.A #26	ENSGT00940000158539.a #27	ENSGT00940000160383.f	ENSGT00940000160383.e	ENSGT00940000155759.e.a	ENSGT00490000043417	ENSGT00390000001170.a.a	ENSGT00940000160639.b.a.b.b.a	ENSGT00940000154856.A.b	ENSGT00940000163716.d	ENSGT00950000183114.a.b.b	ENSGT00940000160639.b.b	ENSGT00390000013151.a.a.b	ENSGT00970000194563
Characoidei	ANCESTRAL SPECIES	111							ENSGT00940000157233.d #32	ENSGT00940000158526 #29	ENSGT00940000156095.m.b	ENSGT00390000006705	ENSGT00940000160205	ENSGT00940000165390.a	ENSGT00530000063686.a.a #17	ENSGT00940000157541.f.b #20	ENSGT00940000157541.f.a #20	ENSGT00390000015050.`b.a #22	ENSGT00390000000220.B.c.a #25	ENSGT00390000000220.A #26	ENSGT00940000158539.a #27	ENSGT00940000160383.e	ENSGT00940000155759.e.a	ENSGT00490000043417	ENSGT00390000001170.a.a	ENSGT00940000160639.b.b	ENSGT00390000013151.a.a.b	ENSGT00970000194563	ENSGT00940000160532.h.b	ENSGT00510000049102	ENSGT00390000016151	ENSGT00940000154486.b.a.a.b.e.a.a.a	ENSGT00940000154486.b.b.a.b
Red-bellied piranha	MODERN SPECIES	36			R3HDM1 (ENSPNAG00000005436)	ENSPNAG00000029180	rab3gap1 (ENSPNAG00000029167)	UBXN4 (ENSPNAG00000005435)	ENSPNAG00000005968	ENSPNAG00000028914	ENSPNAG00000006111	NMI (ENSPNAG00000028870) #17	RND3 (ENSPNAG00000006394) #20	ENSPNAG00000004443	rnd3b (ENSPNAG00000028797) #20	ENSPNAG00000028771	ENSPNAG00000005825	mmadhcb (ENSPNAG00000005431) #22	lypd6 (ENSPNAG00000004795) #25	lypd6b (ENSPNAG00000028673) #26	ENSPNAG00000028662	KIF5C (ENSPNAG00000028635) #27	ENSPNAG00000028623	ENSPNAG00000006388	ccnt2a (ENSPNAG00000028602)	acmsd (ENSPNAG00000005109)	tmem163a (ENSPNAG00000004366)	arl4cb (ENSPNAG00000028458)	sh3bp4 (ENSPNAG00000028398)	ENSPNAG00000005907	CNTNAP5 (ENSPNAG00000028352)	gypc (ENSPNAG00000028335)	ndufa10 (ENSPNAG00000028327)
Mexicana tetra	MODERN SPECIES	185										ENSAMXG00000010209	ENSAMXG00000042722 #17	RND3 (ENSAMXG00000010043) #20	ENSAMXG00000032468	ENSAMXG00000038916	rnd3b (ENSAMXG00000038273) #20	mmadhcb (ENSAMXG00000034335) #22	lypd6 (ENSAMXG00000029523) #25
Electric eel	MODERN SPECIES	146									rab3gap1 (ENSEEEG00000022744)	UBXN4 (ENSEEEG00000022738)	ENSEEEG00000022736	ENSEEEG00000022734 #17	RND3 (ENSEEEG00000022732) #20	rnd3b (ENSEEEG00000022731) #20	ENSEEEG00000022729	mmadhcb (ENSEEEG00000022727) #22	lypd6 (ENSEEEG00000022726) #25	lypd6b (ENSEEEG00000022725) #26	KIF5C (ENSEEEG00000022719) #27	ENSEEEG00000022713	ENSEEEG00000022712	ccnt2a (ENSEEEG00000022710)	acmsd (ENSEEEG00000022707)	tmem163a (ENSEEEG00000022706)	arl4cb (ENSEEEG00000022705)	sh3bp4 (ENSEEEG00000022697)	ENSEEEG00000022693	CNTNAP5 (ENSEEEG00000022664)	gypc (ENSEEEG00000022662)	ndufa10 (ENSEEEG00000022660)	ENSEEEG00000022439
Cyprinoidei	ANCESTRAL SPECIES	66	ENSGT00940000163494.a.a.c.a.a	ENSGT00940000156768	ENSGT00940000165279.c	ENSGT00940000177452	ENSGT01090000259987.b.b.a.b	ENSGT00940000157201 #16	ENSGT00390000012204 #15	ENSGT00940000154533.b.b.a.a #14	ENSGT00940000154533.b.b.b #14	ENSGT00940000154714 #13	ENSGT00940000153568.B	ENSGT00940000164632.a	ENSGT00390000017724.a.b	ENSGT00950000182905.a.a.a.a.a.a	ENSGT00940000157541.f.a #20	ENSGT00390000015050.`b.a #22	ENSGT00390000000220.B.c.a #25	ENSGT00390000000220.A #26	ENSGT00940000158539.a #27	ENSGT00940000160383	ENSGT00940000155759.e.a	ENSGT00490000043417	ENSGT00390000001170.a.a	ENSGT00940000160639.b.a.b.b.a	ENSGT00390000013151.a.a.b	ENSGT00940000160532.h.b	ENSGT00510000049102	ENSGT00390000016151	ENSGT00390000007364.i	ENSGT00940000158837.v	ENSGT00940000158837.u
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	29	ENSGT00940000163494.a.a.c.b.a	ENSGT00940000163494.a.a.c.a.a.a	ENSGT00940000156768.ob.b	ENSGT00940000165279.c.b	ENSGT00940000177452	ENSGT01090000259987.b.b.a.b.g	ENSGT00940000157201.m #16	ENSGT00390000012204.e #15	ENSGT00940000154533.b.b.b.j #14	ENSGT00940000154714.f.b #13	ENSGT00940000153568.B.t	ENSGT00940000164632.a.c	ENSGT00390000017724.a.b.k.b	ENSGT00950000182905.a.a.a.a.a.a.g	ENSGT00940000157541.f.a.c #20	ENSGT00390000015050.`b.a.g #22	ENSGT00390000000220.B.c.a #25	ENSGT00390000000220.A.a #26	ENSGT00940000158539.a #27	ENSGT00940000160383.g	ENSGT00940000155759.e.a.d	ENSGT00490000043417.a	ENSGT00390000001170.a.a.a	ENSGT00940000160639.b.a.b.b.a.c.b	ENSGT00390000013151.a.a.b.a	ENSGT00940000160532.h.b.a.b	ENSGT00530000065251.a.b.b.b	ENSGT00510000049102.b	ENSGT00390000016151.d	ENSGT00390000007364.i.a.b	ENSGT00940000158837.u.a
Goldfish	MODERN SPECIES	27	ENSCARG00000018987	crygs4 (ENSCARG00000018967)	ENSCARG00000017687	etv5a (ENSCARG00000017296)	itgb5 (ENSCARG00000015739)	ENSCARG00000015686	tnfaip6 (ENSCARG00000015680) #16	rif1 (ENSCARG00000015632) #15	NEB (ENSCARG00000014233) #14	arl5a (ENSCARG00000014148) #13	tsn (ENSCARG00000014138)	si:dkey-91i10.2 (ENSCARG00000014133)	eaf2 (ENSCARG00000014124)	cyp27a3 (ENSCARG00000014070)	rnd3b (ENSCARG00000014059) #20	mmadhcb (ENSCARG00000014025) #22	lypd6 (ENSCARG00000014013) #25	lypd6b (ENSCARG00000013995) #26	ccnt2a (ENSCARG00000013896)	acmsd (ENSCARG00000013858)	ENSCARG00000013846	tmem163a (ENSCARG00000013825)	arl4cb (ENSCARG00000013821)	sh3bp4 (ENSCARG00000013788)	ENSCARG00000013784	ENSCARG00000013769	rpe (ENSCARG00000013744)	ENSCARG00000013718	COL6A3 (ENSCARG00000013588)	cops8 (ENSCARG00000013567)	ENSCARG00000013563
Cyprininae_a	ANCESTRAL SPECIES	139	ENSGT00940000163494.a.a.c.b.a	ENSGT00940000163494.a.a.c.a.a.a	ENSGT00940000156768.ob.b	ENSGT00940000165279.c.b	ENSGT00940000177452	ENSGT01090000259987.b.b.a.b.g	ENSGT00940000157201.m #16	ENSGT00390000012204.e #15	ENSGT00940000154533.b.b.b.j #14	ENSGT00940000154714.f.b #13	ENSGT00940000153568.B.t	ENSGT00940000164632.a.c	ENSGT00390000017724.a.b.k.b	ENSGT00950000182905.a.a.a.a.a.a.g	ENSGT00940000157541.f.a.c #20	ENSGT00390000015050.`b.a.g #22	ENSGT00390000000220.B.c.a.a #25	ENSGT00390000000220.A.b #26	ENSGT00940000158539.a #27	ENSGT00940000160383.h	ENSGT00940000155759.e.a.c	ENSGT00490000043417.b	ENSGT00390000001170.a.a.b	ENSGT00940000160639.b.a.b.b.a.c.a	ENSGT00390000013151.a.a.b.b
Common carp reference	MODERN SPECIES	41	ENSCCRG00000064359	crygm3 (ENSCCRG00000052634)	crygs4 (ENSCCRG00000004443)	crygs3 (ENSCCRG00000067459)	ENSCCRG00000013330	etv5a (ENSCCRG00000010422)	itgb5 (ENSCCRG00000018414)	rif1 (ENSCCRG00000012852) #15	ENSCCRG00000011994 #14	arl5a (ENSCCRG00000022985) #13	tsn (ENSCCRG00000022981)	si:dkey-91i10.2 (ENSCCRG00000072850)	eaf2 (ENSCCRG00000057113)	cyp27a3 (ENSCCRG00000025926)	rnd3b (ENSCCRG00000025938) #20	mmadhcb (ENSCCRG00000025943) #22	lypd6 (ENSCCRG00000059553) #25	kif5c (ENSCCRG00000034249)	ccnt2a (ENSCCRG00000014116)	acmsd (ENSCCRG00000062950)	tmem163a (ENSCCRG00000011322)	arl4cb (ENSCCRG00000076003)	sh3bp4 (ENSCCRG00000019085)	ENSCCRG00000034902	gypc (ENSCCRG00000065481)	ENSCCRG00000025572	ENSCCRG00000067649	ndufa10 (ENSCCRG00000024097)	faima (ENSCCRG00000024080)	ENSCCRG00000060749	parp14rs1 (ENSCCRG00000025447)
Golden-line barbel	MODERN SPECIES	522	crygm3 (ENSSGRG00000032958)	crygs4 (ENSSGRG00000032959)	crygs3 (ENSSGRG00000032960)	ENSSGRG00000032980	etv5a (ENSSGRG00000033834)	ENSSGRG00000033904	itgb5 (ENSSGRG00000033915)	tnfaip6 (ENSSGRG00000034825) #16	rif1 (ENSSGRG00000034830) #15	NEB (ENSSGRG00000034878) #14	arl5a (ENSSGRG00000035151) #13	tsn (ENSSGRG00000035152)	si:dkey-91i10.2 (ENSSGRG00000035153)	cyp27a3 (ENSSGRG00000035155)	rnd3b (ENSSGRG00000035161) #20	mmadhcb (ENSSGRG00000035163) #22	lypd6 (ENSSGRG00000035166) #25	lypd6b (ENSSGRG00000035167) #26	KIF5C (ENSSGRG00000035170) #27	ENSSGRG00000035246	ccnt2a (ENSSGRG00000035248)	acmsd (ENSSGRG00000035253)	tmem163a (ENSSGRG00000035293)	arl4cb (ENSSGRG00000035295)	sh3bp4 (ENSSGRG00000035298)	ENSSGRG00000035302	ENSSGRG00000035305	ENSSGRG00000035306	gypc (ENSSGRG00000035307)	ndufa10 (ENSSGRG00000035310)	faima (ENSSGRG00000035320)
Cyprininae	ANCESTRAL SPECIES	1070													ENSGT00390000017724.a.b.k.a	ENSGT00950000182905.a.a.a.a.a.a.h	ENSGT00940000157541.f.a.d #20	ENSGT00390000015050.`b.a.h #22
Cyprininae_a	ANCESTRAL SPECIES	420	ENSGT00940000163148.a.b.b.a.a.b.a	ENSGT00940000163494.a.a.c.a.a.b	ENSGT00940000156768.ob.a	ENSGT00940000165279.c.a	ENSGT01090000259987.b.b.a.b.h	ENSGT00940000157201.n #16	ENSGT00390000012204.f #15	ENSGT00940000154533.b.b.b.i #14	ENSGT00940000154714.e #13	ENSGT00940000153568.B.s	ENSGT00940000164632.a.d	ENSGT00390000017724.a.b.l	ENSGT00390000017724.a.b.k.a	ENSGT00950000182905.a.a.a.a.a.a.h	ENSGT00940000157541.f.a.d #20	ENSGT00390000015050.`b.a.h #22	ENSGT00390000000220.B.c.a.b #25	ENSGT00390000000220.A.a #26
Common carp reference	MODERN SPECIES	46	crygm3 (ENSCCRG00000072277)	crygs3 (ENSCCRG00000079061)	ENSCCRG00000066849	etv5a (ENSCCRG00000022524)	ENSCCRG00000067282	itgb5 (ENSCCRG00000022827)	tnfaip6 (ENSCCRG00000025585) #16	rif1 (ENSCCRG00000025609) #15	NEB (ENSCCRG00000025686) #14	arl5a (ENSCCRG00000025915) #13	tsn (ENSCCRG00000070114)	si:dkey-91i10.2 (ENSCCRG00000068224)	eaf2 (ENSCCRG00000057093)	cyp27a3 (ENSCCRG00000049440)	rnd3b (ENSCCRG00000065629) #20	mmadhcb (ENSCCRG00000049425) #22	lypd6 (ENSCCRG00000025949) #25	lypd6b (ENSCCRG00000034235) #26	KIF5C (ENSCCRG00000014415) #27	ENSCCRG00000065560	ENSCCRG00000057200	ccnt2a (ENSCCRG00000057736)	tmem163a (ENSCCRG00000072575)	arl4cb (ENSCCRG00000071607)	sh3bp4 (ENSCCRG00000023537)	ENSCCRG00000051346	ENSCCRG00000081080	gypc (ENSCCRG00000025107)	ndufa10 (ENSCCRG00000080985)	faima (ENSCCRG00000078338)	ENSCCRG00000045314
Golden-line barbel	MODERN SPECIES	531	crygm5 (ENSSGRG00000054281)	crygs4 (ENSSGRG00000054282)	crygs3 (ENSSGRG00000054285)	DGKG (ENSSGRG00000054300)	etv5a (ENSSGRG00000054349)	itgb5 (ENSSGRG00000054360)	tnfaip6 (ENSSGRG00000054435) #16	rif1 (ENSSGRG00000054443) #15	NEB (ENSSGRG00000054455) #14	arl5a (ENSSGRG00000054480) #13	tsn (ENSSGRG00000054481)	si:dkey-91i10.2 (ENSSGRG00000054482)	eaf2 (ENSSGRG00000054485)	cyp27a3 (ENSSGRG00000054488)	rnd3b (ENSSGRG00000054492) #20	mmadhcb (ENSSGRG00000054494) #22	ENSSGRG00000054497	lypd6b (ENSSGRG00000054501) #26	KIF5C (ENSSGRG00000054502) #27	ENSSGRG00000054503	ccnt2a (ENSSGRG00000054507)	acmsd (ENSSGRG00000054509)	tmem163a (ENSSGRG00000054521)	sh3bp4 (ENSSGRG00000054526)
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	49	ENSCARG00000038347	crygm5 (ENSCARG00000038426)	crygm3 (ENSCARG00000038442)	crygs3 (ENSCARG00000038459)	ENSCARG00000038544	etv5a (ENSCARG00000039491)	ENSCARG00000039612	itgb5 (ENSCARG00000039732)	tnfaip6 (ENSCARG00000040230) #16	rif1 (ENSCARG00000040293) #15	NEB (ENSCARG00000040743) #14	arl5a (ENSCARG00000041617) #13	eaf2 (ENSCARG00000041651)	cyp27a3 (ENSCARG00000041694)	rnd3b (ENSCARG00000041834) #20	mmadhcb (ENSCARG00000041860) #22	lypd6 (ENSCARG00000041915) #25	lypd6b (ENSCARG00000041942) #26	KIF5C (ENSCARG00000041961) #27	ENSCARG00000042002	ccnt2a (ENSCARG00000042017)	tmem163a (ENSCARG00000042049)	arl4cb (ENSCARG00000042078)	sh3bp4 (ENSCARG00000042089)	rpl8 (ENSCARG00000042135)	usp9 (ENSCARG00000042327)	ENSCARG00000043606	ENSCARG00000043616	dnajb11 (ENSCARG00000043645)	rabl3 (ENSCARG00000043760)	ENSCARG00000043920
Goldfish	MODERN SPECIES	49	P2RY8 (ENSCARG00000003731)	upf3a (ENSCARG00000003723)	cdc16 (ENSCARG00000003579)	dcun1d2a (ENSCARG00000003526)	tfdp1a (ENSCARG00000003473)	mettl21cb (ENSCARG00000003455)	gabpa (ENSCARG00000003447)	appb (ENSCARG00000002578)	jam2b (ENSCARG00000002482)	ncam2 (ENSCARG00000001853)	arl5a (ENSCARG00000001753) #13	tsn (ENSCARG00000001746)	eaf2 (ENSCARG00000001742)	cyp27a3 (ENSCARG00000001646)	rnd3b (ENSCARG00000001616) #20	mmadhcb (ENSCARG00000001603) #22	lypd6 (ENSCARG00000001597) #25	lypd6b (ENSCARG00000001592) #26	ENSCARG00000001589	smc1al (ENSCARG00000001161)	tnnc1a (ENSCARG00000001053)	slc6a1a (ENSCARG00000001036)	ENSCARG00000001008	ENSCARG00000001005	ENSCARG00000000895	jagn1a (ENSCARG00000000826)	tfg (ENSCARG00000000818)	COL8A1 (ENSCARG00000000799)	dcbld2 (ENSCARG00000000778)	tmem30c (ENSCARG00000000759)	cmss1 (ENSCARG00000000742)
Zebrafish	MODERN SPECIES	24	crygm3 (ENSDARG00000078189)	crygs4 (ENSDARG00000010701)	DGKG (ENSDARG00000062696)	etv5a (ENSDARG00000069763)	rbm44 (ENSDARG00000069758)	itgb5 (ENSDARG00000012942)	tnfaip6 (ENSDARG00000093440) #16	rif1 (ENSDARG00000062650) #15	NEB (ENSDARG00000032630) #14	arl5a (ENSDARG00000018627) #13	tsn (ENSDARG00000041830)	si:dkey-91i10.2 (ENSDARG00000074034)	eaf2 (ENSDARG00000010432)	cyp27a3 (ENSDARG00000057262)	rnd3b (ENSDARG00000007396) #20	mmadhcb (ENSDARG00000005870) #22	lypd6 (ENSDARG00000004307) #25	ENSDARG00000111339	lypd6b (ENSDARG00000077643) #26	kif5c (ENSDARG00000076027)	ENSDARG00000094272	ccnt2a (ENSDARG00000036685)	acmsd (ENSDARG00000062549)	tmem163a (ENSDARG00000079858)	arl4cb (ENSDARG00000032708)	sh3bp4 (ENSDARG00000030104)	CNTNAP5 (ENSDARG00000073920)	gypc (ENSDARG00000041546)	ndufa10 (ENSDARG00000013333)	faima (ENSDARG00000005828)	ENSDARG00000006848
Osteoglossocephalai	ANCESTRAL SPECIES	18	ENSGT00490000043417	ENSGT00940000155759	ENSGT00940000160383	ENSGT00390000006705	ENSGT00940000158559	ENSGT00940000156095	ENSGT00940000160205	ENSGT00940000165390.a	ENSGT00530000063686.a.a #17	ENSGT00940000157541.f #20	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.a #22	ENSGT00390000000220.B.c.a #25	ENSGT00940000158539.b #27	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00390000000220.B.c.b #25	ENSGT00390000000220.A #26	ENSGT00940000158539.a #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233 #32	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.a.a	ENSGT00940000167103
Osteoglossiformes	ANCESTRAL SPECIES	277								ENSGT00940000153470.a.a.a.a.h	ENSGT00390000001170.a.b	ENSGT00940000155759.c	ENSGT00940000160383	ENSGT00940000171141	ENSGT00940000154311.b	ENSGT00530000063686.a.a #17	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.c.a #25	ENSGT00390000000220.B.c.b #25	ENSGT00940000158539.a.l #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b.c #30	ENSGT00940000157233.b #32	ENSGT00950000183208.A.c.a.s	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.a.a.a.a
Asian bonytongue	MODERN SPECIES	13	SIX1 (ENSSFOG00015013516)	ENSSFOG00015013530	ENSSFOG00015013552	SGPP1 (ENSSFOG00015013571)	ppp2r5eb (ENSSFOG00015013606)	ENSSFOG00015013698	mgat5 (ENSSFOG00015025621)	tmem163a (ENSSFOG00015013757)	acmsd (ENSSFOG00015013796)	CCNT2 (ENSSFOG00015013826)	rab3gap1 (ENSSFOG00015013870)	ZRANB3 (ENSSFOG00015014001)	R3HDM1 (ENSSFOG00015014134)	UBXN4 (ENSSFOG00015014378)	rnd3a (ENSSFOG00015030279) #20	mmadhca (ENSSFOG00015014453) #22	LYPD6 (ENSSFOG00015014472) #25	KIF5C (ENSSFOG00015014505) #27	epc2 (ENSSFOG00015014568) #29	MBD5 (ENSSFOG00015006495) #30	ACVR2A (ENSSFOG00015006516) #32	ENSSFOG00015028999	zeb2b (ENSSFOG00015006557)	ENSSFOG00015024415	gtdc1 (ENSSFOG00015006586)	arhgap15 (ENSSFOG00015006616)	KYNU (ENSSFOG00015006641)	LRP1B (ENSSFOG00015006789)	bzw1a (ENSSFOG00015007027)	ARL4C (ENSSFOG00015024371)	sh3bp4a (ENSSFOG00015007127)
P. kingsleyae	MODERN SPECIES	151															rnd3a (ENSPKIG00000011603) #20	MMADHC (ENSPKIG00000011626) #22	lypd6 (ENSPKIG00000011656) #25	KIF5C (ENSPKIG00000011708) #27	ENSPKIG00000011799	ENSPKIG00000011811 #29	MBD5 (ENSPKIG00000011828) #30	ACVR2A (ENSPKIG00000011845) #32	ENSPKIG00000011877	zeb2b (ENSPKIG00000011898)	ENSPKIG00000011922	gtdc1 (ENSPKIG00000011945)	arhgap15 (ENSPKIG00000012000)	KYNU (ENSPKIG00000012039)	ENSPKIG00000012059	LRP1B (ENSPKIG00000012105)	TMEM256 (ENSPKIG00000012256)
Clupeocephala	ANCESTRAL SPECIES	110	ENSGT00940000165301.b	ENSGT00940000154817.b.b.b.p	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00940000157211.k	ENSGT00940000156353.u.b	ENSGT00940000159094.e	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000158539.b #27	ENSGT00390000000220.B.c.a #25	ENSGT00940000157541.f #20	ENSGT00390000015050.`b.a #22	ENSGT00390000000220.B.c.b #25	ENSGT00390000000220.A #26	ENSGT00940000158539.a #27	ENSGT00940000158526 #29	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233.c #32	ENSGT00950000183208.A.c.a	ENSGT00390000008033	ENSGT00940000157521.a.b
Otomorpha	ANCESTRAL SPECIES	151	ENSGT00940000165301.b	ENSGT00940000154817.b.b.b.p	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00940000157211.k	ENSGT00940000156353.u.b	ENSGT00940000159094.e	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000158539.b #27
Clupeiformes	ANCESTRAL SPECIES	46	ENSGT00940000158265	ENSGT00940000165301.b	ENSGT00940000154817.b.b.b.p	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00940000157211.k	ENSGT00940000156353.u.b	ENSGT00940000159094.e	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000158539.b #27
Denticle herring	MODERN SPECIES	15	clcn4 (ENSDCDG00000020414)	ENSDCDG00000020385	CLASP1 (ENSDCDG00000020053)	gli2b (ENSDCDG00000020021)	INHBB (ENSDCDG00000020001)	ralba (ENSDCDG00000019998)	ptpn4b (ENSDCDG00000019858)	MRAS (ENSDCDG00000019842)	PTH2R (ENSDCDG00000019292)	mgat5 (ENSDCDG00000019250)	TMEM163 (ENSDCDG00000019234)	ccnt2b (ENSDCDG00000019220)	ZRANB3 (ENSDCDG00000019219)	R3HDM1 (ENSDCDG00000017177)	rnd3a (ENSDCDG00000017137) #20	mmadhca (ENSDCDG00000017132) #22	lypd6 (ENSDCDG00000017131) #25	KIF5C (ENSDCDG00000017051) #27	txlng (ENSDCDG00000017024)	rbb4l (ENSDCDG00000016888)	ZRSR2 (ENSDCDG00000016878)	ap1s2 (ENSDCDG00000016872)	PHKA2 (ENSDCDG00000016423)	ppef1 (ENSDCDG00000016399)	ENSDCDG00000016387	cdkl5 (ENSDCDG00000016372)	SCML2 (ENSDCDG00000016363)	NHS (ENSDCDG00000016360)	ace2 (ENSDCDG00000016354)	ENSDCDG00000016348	ENSDCDG00000016346
Atlantic herring	MODERN SPECIES	13	ENSCHAG00000025058	INHBB (ENSCHAG00000025084)	RALB (ENSCHAG00000025088)	ENSCHAG00000025093	ENSCHAG00000025098	ptpn4b (ENSCHAG00000025109)	PTH2R (ENSCHAG00000025146)	mgat5 (ENSCHAG00000025244)	ENSCHAG00000002437	ccnt2b (ENSCHAG00000002533)	ENSCHAG00000002722	GOLT1B (ENSCHAG00000004077)	ENSCHAG00000004095	ENSCHAG00000004364	rnd3a (ENSCHAG00000004399) #20	mmadhca (ENSCHAG00000004464) #22	ENSCHAG00000004542 #25	ENSCHAG00000004620 #25	ENSCHAG00000004669	ENSCHAG00000004692	ENSCHAG00000004722	ENSCHAG00000004817 #27	idh3b (ENSCHAG00000005618)	ptpra (ENSCHAG00000006627)	gnrh2 (ENSCHAG00000008228)	klf12a (ENSCHAG00000008249)	ENSCHAG00000008271	KLF5 (ENSCHAG00000008282)	pibf1 (ENSCHAG00000008292)	mtx2 (ENSCHAG00000008327)	PTCD1 (ENSCHAG00000008463)
Otophysi	ANCESTRAL SPECIES	121						ENSGT00940000157211.k	ENSGT00940000156353.u.b	ENSGT00940000159094.e	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000009029	ENSGT00940000155992.c.b	ENSGT00390000015709	ENSGT00940000156180.e	ENSGT00390000001225	ENSGT00390000005581.a	ENSGT00940000167649	ENSGT01050000244905.A.a	ENSGT00390000010463.a.b.c.a	ENSGT00390000006330.a.a.b	ENSGT00530000063599.B.g	ENSGT00940000155311.B	ENSGT00940000154486.b.b.b	ENSGT00940000154486.b.a.a.b.e.a.b	ENSGT00940000160532.g
Characiphysae	ANCESTRAL SPECIES	170																ENSGT00390000015050.`b.b #22	ENSGT00390000009029	ENSGT00940000155992.c.b	ENSGT00390000015709	ENSGT00940000156180.e	ENSGT00390000001225	ENSGT00390000005581.a	ENSGT00940000167649	ENSGT01050000244905.A.a	ENSGT00390000010463.a.b.c.a	ENSGT00390000006330.a.a.b	ENSGT00530000063599.B.g	ENSGT00940000155311.B	ENSGT00940000154486.b.b.b	ENSGT00940000154486.b.a.a.b.e.a.b	ENSGT00940000160532.g.d
Characiphysae_b	ANCESTRAL SPECIES	87	ENSGT01030000235162	ENSGT00390000008856	ENSGT00940000153737.b	ENSGT00500000044890.a.a.f	ENSGT00940000156153	ENSGT01070000253775.b	ENSGT00390000013080	ENSGT00940000158204.d	ENSGT00940000164753.b	ENSGT00550000075065.b	ENSGT00390000005372.f	ENSGT00940000163944	ENSGT00940000157249	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00390000015050.`b.b #22	ENSGT00390000009029	ENSGT00940000155992.c.b	ENSGT00390000015709	ENSGT00940000156180.e	ENSGT00390000001225	ENSGT00390000005581.a	ENSGT00940000167649	ENSGT01050000244905.A.a	ENSGT00390000010463.a.b.c.a	ENSGT00390000006330.a.a.b	ENSGT00530000063599.B.g	ENSGT00940000155311.B	ENSGT00940000154486.b.b.b	ENSGT00940000154486.b.a.a.b.e.a.b.a	ENSGT00940000160532.g.d
Characoidei	ANCESTRAL SPECIES	84	ENSGT01030000235162	ENSGT00390000008856	ENSGT00940000153737.b	ENSGT00500000044890.a.a.f	ENSGT00940000156153	ENSGT01070000253775.b	ENSGT00390000013080	ENSGT00940000158204.d	ENSGT00940000164753.b	ENSGT00550000075065.b	ENSGT00390000005372.f	ENSGT00940000163944	ENSGT00940000157249	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00390000015050.`b.b #22	ENSGT00390000009029	ENSGT00940000155992.c.b	ENSGT00390000015709	ENSGT00940000156180.e	ENSGT00390000001225	ENSGT00390000005581.a	ENSGT00940000167649	ENSGT01050000244905.A.a	ENSGT00390000010463.a.b.c.a	ENSGT00390000006330.a.a.b	ENSGT00530000063599.B.g	ENSGT00940000155311.B	ENSGT00940000154486.b.b.b	ENSGT00940000154486.b.a.a.b.e.a.b.a	ENSGT00940000160532.g.d
Red-bellied piranha	MODERN SPECIES	802													ENSPNAG00000022855	KRT222 (ENSPNAG00000006816)	krt96 (ENSPNAG00000003740)	mmadhca (ENSPNAG00000022832) #22	cep70 (ENSPNAG00000022802)	adarb1a (ENSPNAG00000022697)	slx9 (ENSPNAG00000022664)	ENSPNAG00000022645	cnot9 (ENSPNAG00000022564)
Mexicana tetra	MODERN SPECIES	50	mrps28 (ENSAMXG00000026324)	capn1b (ENSAMXG00000013685)	capn2b (ENSAMXG00000013696)	ENSAMXG00000013724	capn8 (ENSAMXG00000013776)	ENSAMXG00000029688	ENSAMXG00000013873	nptxrb (ENSAMXG00000029357)	ENSAMXG00000031693	pcyt2 (ENSAMXG00000035632)	gcga (ENSAMXG00000039471)	dpp4 (ENSAMXG00000013549)	mettl21a (ENSAMXG00000037058)	ENSAMXG00000032855	krt96 (ENSAMXG00000041340)	mmadhca (ENSAMXG00000034884) #22	cep70 (ENSAMXG00000013654)	adarb1a (ENSAMXG00000013675)	slx9 (ENSAMXG00000030110)	ENSAMXG00000032795	cnot9 (ENSAMXG00000013778)	ftcd (ENSAMXG00000013790)	mstna (ENSAMXG00000029840)	stat1a (ENSAMXG00000013830)	pipox (ENSAMXG00000037120)	glsa (ENSAMXG00000013859)	dnaaf1 (ENSAMXG00000037795)	nab1a (ENSAMXG00000013878)	mfsd6a (ENSAMXG00000013890)	ENSAMXG00000026310	ahr1b (ENSAMXG00000013907)
Electric eel	MODERN SPECIES	650								jagn1b (ENSEEEG00000021250)	ENSEEEG00000021248	tp53bp2b (ENSEEEG00000021241)	gtpbp2b (ENSEEEG00000021218)	KRT222 (ENSEEEG00000021215)	ENSEEEG00000021214	ENSEEEG00000021096	ENSEEEG00000020853	mmadhca (ENSEEEG00000020832) #22	cep70 (ENSEEEG00000020827)	adarb1a (ENSEEEG00000020825)
Channel catfish	MODERN SPECIES	19	ENSIPUG00000006298	sh3bp4a (ENSIPUG00000006332)	S100B (ENSIPUG00000006356)	ENSIPUG00000006377	ahr2 (ENSIPUG00000006401)	ahr1b (ENSIPUG00000006436)	ENSIPUG00000006485	mfsd6a (ENSIPUG00000006492)	stat1a (ENSIPUG00000006568)	mstna (ENSIPUG00000008665)	FTCD (ENSIPUG00000008676)	cnot9 (ENSIPUG00000008737)	ENSIPUG00000008758	fam207a (ENSIPUG00000008788)	adarb1 (ENSIPUG00000008816)	mmadhca (ENSIPUG00000008913) #22	cep70 (ENSIPUG00000008869)	krt96 (ENSIPUG00000008945)	krt222 (ENSIPUG00000008981)	mettl21a (ENSIPUG00000009009)	dpp4 (ENSIPUG00000009029)	gcga (ENSIPUG00000009050)	PCYT2 (ENSIPUG00000009148)	GNAO (ENSIPUG00000009256)	npb (ENSIPUG00000009301)	sgsh (ENSIPUG00000009330)	slc26a11 (ENSIPUG00000009399)	tspan7b (ENSIPUG00000009494)	mid1ip1b (ENSIPUG00000009512)	bcor (ENSIPUG00000009527)	atp6ap2 (ENSIPUG00000009598)
Cyprinoidei	ANCESTRAL SPECIES	39	ENSGT00390000005372.f.e	ENSGT00940000163944	ENSGT00940000157249	ENSGT00940000160342.f	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000157211.k	ENSGT00940000156353.u.b	ENSGT00940000159094.e	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000009029	ENSGT00940000155992.c.b	ENSGT00390000015709	ENSGT00940000156180.e	ENSGT00390000001225	ENSGT00390000005581.a	ENSGT00940000167649	ENSGT01050000244905.A.a	ENSGT00390000010463.a.b.c.a	ENSGT00390000006330.a.a.b	ENSGT00530000063599.B.g	ENSGT00940000155311.B	ENSGT00940000154486.b.b.b	ENSGT00940000154486.b.a.a.b.e.a.b	ENSGT00940000160532.g
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	11	ENSGT00390000005372.f.e.a.a	ENSGT00940000163944.a	ENSGT00940000157249	ENSGT00940000160342.f.b	ENSGT00940000159655.f	ENSGT00950000182969.B.c.a.b.e	ENSGT00940000157211.k.a	ENSGT00940000156353.u.b.e	ENSGT00940000159094.e.b	ENSGT00940000153470.a.a.a.a.f	ENSGT00390000001170.a.b.c	ENSGT00940000155759.e.b.b	ENSGT00940000158559.c	ENSGT00940000156095.m.a.a	ENSGT00940000157541.e.x #20	ENSGT00390000015050.`b.b.a #22	ENSGT00390000009029	ENSGT00940000155992.c.b.h	ENSGT00390000015709.a	ENSGT00940000156180.e.b	ENSGT00390000001225.r	ENSGT00940000160342.f.a	ENSGT00940000159655.e	ENSGT00950000182969.B.c.a.b.f	ENSGT00940000157211.k.b	ENSGT00940000156353.u.b.f	ENSGT00940000159094.e.a	ENSGT00940000153470.a.a.a.a.e	ENSGT00390000001170.a.b.d	ENSGT00940000155759.e.b.a	ENSGT00940000158559.d
Goldfish	MODERN SPECIES	41	ENSCARG00000029639	ENSCARG00000029653	crygs1 (ENSCARG00000029660)	KRT222 (ENSCARG00000029703)	ENSCARG00000029718	ptpn4b (ENSCARG00000029749)	MRAS (ENSCARG00000029875)	PTH2R (ENSCARG00000029891)	ENSCARG00000029970	mgat5 (ENSCARG00000030031)	TMEM163 (ENSCARG00000030198)	ccnt2b (ENSCARG00000030214)	ZRANB3 (ENSCARG00000030341)	R3HDM1 (ENSCARG00000031421)	rnd3a (ENSCARG00000031747) #20	mmadhca (ENSCARG00000031782) #22	cep70 (ENSCARG00000031810)	adarb1a (ENSCARG00000031891)	ENSCARG00000032255	cnot9 (ENSCARG00000034596)	ENSCARG00000034701	mstna (ENSCARG00000034715)	stat1a (ENSCARG00000034836)	glsa (ENSCARG00000039255)	mfsd6a (ENSCARG00000040194)	ahr1b (ENSCARG00000040222)	ENSCARG00000040333	ahr2 (ENSCARG00000040345)	ENSCARG00000040693	s100b (ENSCARG00000047694)	sh3bp4a (ENSCARG00000047723)
Cyprininae_a	ANCESTRAL SPECIES	144	ENSGT00390000005372.f.e.a.a	ENSGT00940000163944.a	ENSGT00940000157249	ENSGT00940000160342.f.b	ENSGT00940000159655.f	ENSGT00950000182969.B.c.a.b.e	ENSGT00940000157211.k.a	ENSGT00940000156353.u.b.e	ENSGT00940000159094.e.b	ENSGT00940000153470.a.a.a.a.f	ENSGT00390000001170.a.b.c	ENSGT00940000155759.e.b.b	ENSGT00940000158559.c	ENSGT00940000156095.m.a.a	ENSGT00940000157541.e.x #20	ENSGT00390000015050.`b.b.a #22	ENSGT00390000009029	ENSGT00940000155992.c.b.h	ENSGT00390000015709.a	ENSGT00940000156180.e.b	ENSGT00390000001225.r	ENSGT00390000005581.a	ENSGT00940000167649.f.a	ENSGT01050000244905.A.a.b	ENSGT00390000010463.a.b.c.a.a	ENSGT00390000006330.a.a.b.a	ENSGT00530000063599.B.g.d	ENSGT00940000155311.B.k	ENSGT00940000154486.b.b.b.f	ENSGT00940000154486.b.a.a.b.e.a.b.c	ENSGT00990000210218
Common carp reference	MODERN SPECIES	43	mettl21a (ENSCCRG00000054423)	ENSCCRG00000072918	ENSCCRG00000077214	crygs1 (ENSCCRG00000058988)	ENSCCRG00000046321	ptpn4b (ENSCCRG00000038493)	ENSCCRG00000038513	ENSCCRG00000022437	ENSCCRG00000020887	mgat5 (ENSCCRG00000077969)	ENSCCRG00000000810	ccnt2b (ENSCCRG00000066766)	ENSCCRG00000000761	ENSCCRG00000008994	rnd3a (ENSCCRG00000043088) #20	mmadhca (ENSCCRG00000057539) #22	cep70 (ENSCCRG00000008917)	adarb1a (ENSCCRG00000020488)	slx9 (ENSCCRG00000052631)	ENSCCRG00000028054	cnot9 (ENSCCRG00000041798)	mstna (ENSCCRG00000035818)	stat1a (ENSCCRG00000035713)	glsa (ENSCCRG00000032031)	nab1a (ENSCCRG00000054360)	mfsd6a (ENSCCRG00000039447)	ENSCCRG00000073877	ahr1b (ENSCCRG00000005944)	ahr2 (ENSCCRG00000031831)	ENSCCRG00000003704	s100b (ENSCCRG00000069359)
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	3020																mmadhca (ENSSGRG00000011036) #22
Golden-line barbel	MODERN SPECIES	294															rnd3a (ENSSGRG00000021462) #20	mmadhca (ENSSGRG00000021472) #22	adarb1a (ENSSGRG00000021475)	slx9 (ENSSGRG00000021481)	PLCD4 (ENSSGRG00000021487)	cnot9 (ENSSGRG00000021698)	ftcd (ENSSGRG00000021699)	ENSSGRG00000021728	stat1a (ENSSGRG00000021736)	glsa (ENSSGRG00000022467)	nab1a (ENSSGRG00000022939)	mfsd6a (ENSSGRG00000022940)	ENSSGRG00000022941	ahr1b (ENSSGRG00000022942)	ahr2 (ENSSGRG00000023001)	CNTNAP5 (ENSSGRG00000023011)	s100b (ENSSGRG00000023015)
Cyprininae	ANCESTRAL SPECIES	11	ENSGT00390000015709.a	ENSGT00940000156180.e.b	ENSGT00390000001225.r	ENSGT00940000160342.f.a	ENSGT00940000159655.e	ENSGT00950000182969.B.c.a.b.f	ENSGT00940000157211.k.b	ENSGT00940000156353.u.b.f	ENSGT00940000159094.e.a	ENSGT00940000153470.a.a.a.a.e	ENSGT00390000001170.a.b.d	ENSGT00940000155759.e.b.a	ENSGT00940000158559.d	ENSGT00940000156095.m.a.b	ENSGT00940000157541.e.w #20	ENSGT00390000015050.`b.b.b #22	ENSGT00940000155992.c.b.g	ENSGT00390000015709.b	ENSGT00940000156180.e.a	ENSGT00390000001225.q	ENSGT00390000005581.a	ENSGT00940000167649.e	ENSGT00940000167649.f.b	ENSGT01050000244905.A.a.a	ENSGT00390000010463.a.b.c.a.b	ENSGT00390000006330.a.a.b.b	ENSGT00530000063599.B.g.c	ENSGT00940000167649.f.a	ENSGT01050000244905.A.a.b	ENSGT00390000010463.a.b.c.a.a	ENSGT00390000006330.a.a.b.a
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	14	ENSCARG00000034007	ENSCARG00000034002	ENSCARG00000034000	ENSCARG00000033973	ccdc71 (ENSCARG00000033962)	stab1 (ENSCARG00000033393)	NISCH (ENSCARG00000032054)	ENSCARG00000031967	nol8 (ENSCARG00000031942)	sh3bp4a (ENSCARG00000031932)	s100b (ENSCARG00000031921)	ENSCARG00000029144	R3HDM1 (ENSCARG00000026895)	ENSCARG00000026790	rnd3a (ENSCARG00000026780) #20	mmadhca (ENSCARG00000026773) #22	adarb1a (ENSCARG00000026350)	ENSCARG00000022291	s100b (ENSCARG00000022164)	sh3bp4a (ENSCARG00000022133)	arl4ca (ENSCARG00000022131)	ENSCARG00000022126	ENSCARG00000022123	aox5 (ENSCARG00000011547)	ENSCARG00000011162	bzw1a (ENSCARG00000011114)	ENSCARG00000011108	ENSCARG00000011084	gtpbp1l (ENSCARG00000010802)	ENSCARG00000010782	mrpl54 (ENSCARG00000010770)
Goldfish	MODERN SPECIES	14	ENSCARG00000009569	ENSCARG00000009581	ENSCARG00000009595	ENSCARG00000009601	ENSCARG00000009606	ENSCARG00000009613	ENSCARG00000009620	ENSCARG00000009640	ENSCARG00000027881	ENSCARG00000027890	ENSCARG00000027898	TMEM163 (ENSCARG00000027906)	ccnt2b (ENSCARG00000027929)	R3HDM1 (ENSCARG00000028063)	rnd3a (ENSCARG00000030471) #20	mmadhca (ENSCARG00000030491) #22	adarb1a (ENSCARG00000030514)	slx9 (ENSCARG00000030582)	ENSCARG00000030708	cnot9 (ENSCARG00000034144)	ftcd (ENSCARG00000034487)	mstna (ENSCARG00000035931)	stat1a (ENSCARG00000035963)	glsa (ENSCARG00000036617)	nab1a (ENSCARG00000040133)	mfsd6a (ENSCARG00000040144)	ENSCARG00000040156	ahr1b (ENSCARG00000040185)	ENSCARG00000040267	ahr2 (ENSCARG00000040299)	ENSCARG00000040642
Cyprininae_a	ANCESTRAL SPECIES	372	ENSGT00550000075065.b.b	ENSGT00390000005372.f.e.a.b	ENSGT00940000163944.b	ENSGT00940000160342.f.a	ENSGT00940000159655.e	ENSGT00950000182969.B.c.a.b.f	ENSGT00940000157211.k.b	ENSGT00940000156353.u.b.f	ENSGT00940000159094.e.a	ENSGT00940000153470.a.a.a.a.e	ENSGT00390000001170.a.b.d	ENSGT00940000155759.e.b.a	ENSGT00940000158559.d	ENSGT00940000156095.m.a.b	ENSGT00940000157541.e.w #20	ENSGT00390000015050.`b.b.b #22	ENSGT00940000155992.c.b.g	ENSGT00390000015709.b	ENSGT00940000156180.e.a	ENSGT00390000001225.q
Common carp reference	MODERN SPECIES	5	ENSCCRG00000040534	ENSCCRG00000040545	crygs1 (ENSCCRG00000041398)	ENSCCRG00000040513	ENSCCRG00000072057	ENSCCRG00000058389	ptpn4b (ENSCCRG00000046118)	ENSCCRG00000058051	ENSCCRG00000071402	mgat5 (ENSCCRG00000067276)	ENSCCRG00000080602	ENSCCRG00000045345	ENSCCRG00000005743	ENSCCRG00000066299	rnd3a (ENSCCRG00000007684) #20	mmadhca (ENSCCRG00000035622) #22	adarb1a (ENSCCRG00000035133)	slx9 (ENSCCRG00000038404)	ENSCCRG00000041263	cnot9 (ENSCCRG00000027911)	ftcd (ENSCCRG00000027372)	mstna (ENSCCRG00000027350)	stat1a (ENSCCRG00000026976)	glsa (ENSCCRG00000062028)	nab1a (ENSCCRG00000031919)	mfsd6a (ENSCCRG00000031910)	ENSCCRG00000028849	ahr1b (ENSCCRG00000060117)	ahr2 (ENSCCRG00000015382)	ENSCCRG00000067507	ENSCCRG00000072550
Golden-line barbel	MODERN SPECIES	86	pcyt2 (ENSSGRG00000028060)	ENSSGRG00000028149	GCG (ENSSGRG00000028150)	dpp4 (ENSSGRG00000028152)	crygs1 (ENSSGRG00000028259)	ENSSGRG00000028260	ptpn4b (ENSSGRG00000028262)	MRAS (ENSSGRG00000029052)	PTH2R (ENSSGRG00000029056)	mgat5 (ENSSGRG00000029070)	TMEM163 (ENSSGRG00000029291)	ccnt2b (ENSSGRG00000029292)	ENSSGRG00000029353	R3HDM1 (ENSSGRG00000029392)	rnd3a (ENSSGRG00000029394) #20	mmadhca (ENSSGRG00000029400) #22	ENSSGRG00000029404	adarb1a (ENSSGRG00000029407)	slx9 (ENSSGRG00000029519)	ENSSGRG00000029526	cnot9 (ENSSGRG00000029839)	ftcd (ENSSGRG00000029876)	mstna (ENSSGRG00000030028)	stat1a (ENSSGRG00000030033)	glsa (ENSSGRG00000030052)	ENSSGRG00000031460	mfsd6a (ENSSGRG00000031461)	ENSSGRG00000031462	ahr1b (ENSSGRG00000031467)	ahr2 (ENSSGRG00000031728)	ENSSGRG00000031729
Zebrafish	MODERN SPECIES	14	mettl21a (ENSDARG00000012051)	crygs1 (ENSDARG00000042992)	KRT222 (ENSDARG00000071518)	krt97 (ENSDARG00000000212)	krt96 (ENSDARG00000095147)	ptpn4b (ENSDARG00000000183)	MRAS (ENSDARG00000062865)	PTH2R (ENSDARG00000021186)	mgat5 (ENSDARG00000071506)	TMEM163 (ENSDARG00000088227)	ccnt2b (ENSDARG00000036510)	ZRANB3 (ENSDARG00000091538)	ENSDARG00000101458	rnd3a (ENSDARG00000076799) #20	ENSDARG00000105974	mmadhca (ENSDARG00000041602) #22	cep70 (ENSDARG00000076965)	adarb1a (ENSDARG00000041609)	slx9 (ENSDARG00000071500)	ENSDARG00000057975	cnot9 (ENSDARG00000033855)	ftcd (ENSDARG00000007421)	mstna (ENSDARG00000042947)	stat1a (ENSDARG00000006266)	glsa (ENSDARG00000062812)	nab1a (ENSDARG00000042940)	mfsd6a (ENSDARG00000032318)	ahr1b (ENSDARG00000023537)	ahr2 (ENSDARG00000021833)	ENSDARG00000096917	CNTNAP5 (ENSDARG00000075189)
Euteleosteomorpha	ANCESTRAL SPECIES	140							ENSGT00940000159094.e	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000168614	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00390000000220.B.c.a #25	ENSGT00940000158539.b #27	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233.c #32	ENSGT00950000183208.A.c.a	ENSGT00390000008033	ENSGT00940000157521.a.b	ENSGT00940000167103	ENSGT00940000166136	ENSGT00390000012561.b.pb.b	ENSGT00950000183114.a.b.b	ENSGT00940000160639.b.a.b.b.a	ENSGT00940000160639.a
Acanthomorphata	ANCESTRAL SPECIES	253					ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000168614	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25
Euacanthomorphacea	ANCESTRAL SPECIES	49	ENSGT00390000014037.d	ENSGT01030000234996	ENSGT00940000154242.a.c	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000168614	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155041	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00390000003338	ENSGT00940000161508.b	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b
Percomorphaceae	ANCESTRAL SPECIES	22	ENSGT00390000014037.d	ENSGT01030000234996	ENSGT00940000154242.a.c	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000168614	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155041	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00390000003338	ENSGT00940000161508.b	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b
Percomorphaceae_B	ANCESTRAL SPECIES	22	ENSGT01030000234996	ENSGT00940000154242.a.c	ENSGT00940000175432	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000168614	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155041	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00390000003338	ENSGT00940000161508.b	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b
Ovalentaria	ANCESTRAL SPECIES	23	ENSGT00390000014037.d	ENSGT01030000234996	ENSGT00940000154242.a.c	ENSGT00940000175432	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155041.b	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00390000003338	ENSGT00940000161508.b	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b
Atherinomorphae	ANCESTRAL SPECIES	24	ENSGT00940000156913.b.j.a	ENSGT00940000160811.c.b	ENSGT00390000014037.d	ENSGT00940000154242.a.c	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155041.b	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00390000003338	ENSGT00940000161508.b	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b
Cyprinodontiformes	ANCESTRAL SPECIES	25	ENSGT00940000156913.b.j.a	ENSGT00940000160811.c.b	ENSGT00390000014037.d	ENSGT00940000154242.a.c	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155041.b	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00390000003338	ENSGT00940000161508.b	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b
Aplocheiloidei	ANCESTRAL SPECIES	37	ENSGT00940000156913.b.j.a	ENSGT00940000160811.c.b	ENSGT00390000014037.d	ENSGT00940000154242.a.c	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00390000003338	ENSGT00940000161508.b	ENSGT01100000263563.c.a.b
Turquoise killifish	MODERN SPECIES	1615	KLHL41 (ENSNFUG00015000757)	oxgr1a.2 (ENSNFUG00015000753)	ENSNFUG00015000752	DZIP1 (ENSNFUG00015000738)	ABCC4 (ENSNFUG00015000602)	CLDN10 (ENSNFUG00015000564)	ENSNFUG00015000554	CLDN10 (ENSNFUG00015000543)	ccnt2b (ENSNFUG00015000513)	ZRANB3 (ENSNFUG00015000265)	ENSNFUG00015000086	ENSNFUG00015000072	ENSNFUG00015002641	ENSNFUG00015002637	rnd3a (ENSNFUG00015002634) #20	MMADHC (ENSNFUG00015002629) #22	lypd6 (ENSNFUG00015002625) #25	PSPC1 (ENSNFUG00015002622)	ARHGAP20 (ENSNFUG00015002617)	FDX1 (ENSNFUG00015002614)	ENSNFUG00015002610	STRADB (ENSNFUG00015002380)	TRAK2 (ENSNFUG00015002261)	ENSNFUG00015002226	CCKBR (ENSNFUG00015002219)	ENSNFUG00015002215	cpo (ENSNFUG00015002207)	NUDT15 (ENSNFUG00015002203)	ENSNFUG00015002197	ENSNFUG00015002185	FAM155A (ENSNFUG00015002178)
Mangrove rivulus	MODERN SPECIES	218				ENSKMAG00000013033	ENSKMAG00000013069	XKR6 (ENSKMAG00000013160)	enpp4 (ENSKMAG00000013180)	clic5a (ENSKMAG00000013193)	mgat5 (ENSKMAG00000013211)	TMEM163 (ENSKMAG00000013250)	ccnt2b (ENSKMAG00000013280)	ccnt2b (ENSKMAG00000013304)	ZRANB3 (ENSKMAG00000013326)	ENSKMAG00000013373	rnd3a (ENSKMAG00000013429) #20	mmadhca (ENSKMAG00000013447) #22	lypd6 (ENSKMAG00000013478) #25	pspc1 (ENSKMAG00000013525)
Cyprinodontoidei	ANCESTRAL SPECIES	26	ENSGT00390000008042.A.b.d	ENSGT00940000156913.b.j.a	ENSGT00940000160811.c.b	ENSGT00940000154242.a.c	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155041.b	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00940000161508.b	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b	ENSGT00940000158446
Poeciliinae	ANCESTRAL SPECIES	23	ENSGT00390000008042.A.b.d	ENSGT00940000156913.b.j.a	ENSGT00940000160811.c.b	ENSGT00940000154242.a.c	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155041.b	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00940000161508.b	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b	ENSGT00940000158446
Poecilia	ANCESTRAL SPECIES	30	ENSGT00390000008042.A.b.d	ENSGT00940000156913.b.j.a	ENSGT00940000160811.c.b	ENSGT00940000154242.a.c	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155041.b	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00940000161508.b	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b	ENSGT00940000158446
NAME_6	ANCESTRAL SPECIES	295															ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155041.b	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00940000161508.b	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b
Amazon molly	MODERN SPECIES	701															rnd3a (ENSPFOG00000003669) #20	mmadhca (ENSPFOG00000003531) #22	lypd6 (ENSPFOG00000003498) #25	pspc1 (ENSPFOG00000003362)	ENSPFOG00000003344	ENSPFOG00000003306	ENSPFOG00000003290	ENSPFOG00000002085	ENSPFOG00000001632	TRAK2 (ENSPFOG00000001467)	ENSPFOG00000001286	cpo (ENSPFOG00000001020)	cckbra (ENSPFOG00000000880)	NALF1 (ENSPFOG00000000827)	lig4 (ENSPFOG00000000797)	irs2a (ENSPFOG00000000788)	ENSPFOG00000000777
Sailfin molly	MODERN SPECIES	3725															rnd3a (ENSPLAG00000011507) #20	mmadhca (ENSPLAG00000011519) #22	lypd6 (ENSPLAG00000011524) #25	pspc1 (ENSPLAG00000011540)
Guppy	MODERN SPECIES	450	C1QL2 (ENSPREG00000008506)	EN1 (ENSPREG00000008500)	ENSPREG00000008463	ENSPREG00000008395	XKR6 (ENSPREG00000008364)	enpp4 (ENSPREG00000008345)	clic5a (ENSPREG00000008327)	mgat5 (ENSPREG00000008251)	TMEM163 (ENSPREG00000008218)	ENSPREG00000008207	ENSPREG00000008183	ENSPREG00000007902	ENSPREG00000007840	rnd3a (ENSPREG00000007823) #20	ENSPREG00000007818	mmadhca (ENSPREG00000007808) #22	lypd6 (ENSPREG00000007798) #25	pspc1 (ENSPREG00000007786)	ENSPREG00000007759	ENSPREG00000007735	ENSPREG00000007727	NBEAL1 (ENSPREG00000007574)	ENSPREG00000007513	TRAK2 (ENSPREG00000007459)	ENSPREG00000007421	ENSPREG00000007392	cpo (ENSPREG00000007375)	cckbra (ENSPREG00000007364)	ENSPREG00000007355	NALF1 (ENSPREG00000007339)	lig4 (ENSPREG00000007323)
Platyfish	MODERN SPECIES	16	STEAP3 (ENSXMAG00000004127)	C1QL2 (ENSXMAG00000022253)	EN1 (ENSXMAG00000023001)	ENSXMAG00000007812	ENSXMAG00000007815	ENSXMAG00000007823	enpp4 (ENSXMAG00000007831)	clic5a (ENSXMAG00000007839)	mgat5 (ENSXMAG00000007846)	TMEM163 (ENSXMAG00000025051)	ENSXMAG00000007871	ZRANB3 (ENSXMAG00000007875)	ENSXMAG00000007885	ENSXMAG00000024543	rnd3a (ENSXMAG00000007915) #20	mmadhca (ENSXMAG00000027512) #22	lypd6 (ENSXMAG00000028207) #25	pspc1 (ENSXMAG00000007929)	ENSXMAG00000023505	ENSXMAG00000026774	ENSXMAG00000007945	ENSXMAG00000026060	ENSXMAG00000026591	STRADB (ENSXMAG00000007992)	TRAK2 (ENSXMAG00000008010)	ENSXMAG00000008029	cpo (ENSXMAG00000008049)	cckbra (ENSXMAG00000025852)	NALF1 (ENSXMAG00000024341)	lig4 (ENSXMAG00000015142)	irs2a (ENSXMAG00000015145)
NAME_4	ANCESTRAL SPECIES	60	ENSGT00390000008042.A.b.d	ENSGT00940000156913.b.j.a	ENSGT00940000160811.c.b	ENSGT00940000154242.a.c	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155041.b	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00940000161508.b	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b	ENSGT00940000158446
Mummichog	MODERN SPECIES	400																mmadhca (ENSFHEG00000007005) #22	lypd6 (ENSFHEG00000007018) #25	ENSFHEG00000007029	ENSFHEG00000007046	ENSFHEG00000007068	ENSFHEG00000007074	ENSFHEG00000007099	ENSFHEG00000007125	STRADB (ENSFHEG00000007135)	TRAK2 (ENSFHEG00000007156)	cpo (ENSFHEG00000007178)	cckbra (ENSFHEG00000007372)	NALF1 (ENSFHEG00000007385)	lig4 (ENSFHEG00000007398)	irs2a (ENSFHEG00000007403)	acp2 (ENSFHEG00000007432)
Sheepshead minnow	MODERN SPECIES	121												ENSCVAG00000007582	ENSCVAG00000007599	rnd3a (ENSCVAG00000007608) #20	ENSCVAG00000007625	mmadhca (ENSCVAG00000007634) #22	lypd6 (ENSCVAG00000007640) #25	ENSCVAG00000007679	ENSCVAG00000007693	FDX1 (ENSCVAG00000007697)	ENSCVAG00000007710	ENSCVAG00000007760	ENSCVAG00000007783	STRADB (ENSCVAG00000007795)	TRAK2 (ENSCVAG00000007810)	ENSCVAG00000007825	cpo (ENSCVAG00000007843)	cckbra (ENSCVAG00000007879)	NALF1 (ENSCVAG00000007884)	lig4 (ENSCVAG00000007896)	irs2a (ENSCVAG00000007913)
Oryzias	ANCESTRAL SPECIES	26	ENSGT00390000008042.A.b.d	ENSGT00940000156913.b.j.a	ENSGT00940000160811.c.b	ENSGT00940000154242.a.c	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155041.b	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00390000003338	ENSGT00940000161508.b	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b
Oryzias_b	ANCESTRAL SPECIES	24	ENSGT00390000008042.A.b.d	ENSGT00940000156913.b.j.a	ENSGT00940000160811.c.b	ENSGT00940000154242.a.c	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155041.b	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00390000003338	ENSGT00940000161508.b	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b
Indian medaka	MODERN SPECIES	24	STEAP3 (ENSOMEG00000004840)	C1QL2 (ENSOMEG00000004821)	en1a (ENSOMEG00000004805)	ENSOMEG00000004779	ENSOMEG00000000847	XKR6 (ENSOMEG00000004104)	enpp4 (ENSOMEG00000004100)	clic5a (ENSOMEG00000004076)	mgat5 (ENSOMEG00000004049)	TMEM163 (ENSOMEG00000000093)	ccnt2b (ENSOMEG00000003988)	ZRANB3 (ENSOMEG00000000999)	ENSOMEG00000003882	ENSOMEG00000003869	rnd3a (ENSOMEG00000003854) #20	mmadhca (ENSOMEG00000003826) #22	lypd6 (ENSOMEG00000003798) #25	ENSOMEG00000003790	pspc1 (ENSOMEG00000003779)	FDX1 (ENSOMEG00000003743)	ENSOMEG00000003725	ENSOMEG00000003699	ENSOMEG00000003680	TRAK2 (ENSOMEG00000003627)	ENSOMEG00000003563	cpo (ENSOMEG00000003532)	cckbra (ENSOMEG00000003473)	NALF1 (ENSOMEG00000003462)	lig4 (ENSOMEG00000003459)	irs2a (ENSOMEG00000000071)	acp2 (ENSOMEG00000003443)
Javanese ricefish	MODERN SPECIES	11	C1QL2 (ENSOJAG00000000951)	en1a (ENSOJAG00000000941)	ENSOJAG00000000934	ENSOJAG00000000917	ENSOJAG00000000914	enpp4 (ENSOJAG00000000907)	clic5a (ENSOJAG00000000902)	mgat5 (ENSOJAG00000000895)	ENSOJAG00000000891	TMEM163 (ENSOJAG00000000882)	ccnt2b (ENSOJAG00000000869)	ZRANB3 (ENSOJAG00000000816)	ENSOJAG00000000763	ENSOJAG00000000756	rnd3a (ENSOJAG00000000753) #20	mmadhca (ENSOJAG00000000746) #22	lypd6 (ENSOJAG00000000738) #25	pspc1 (ENSOJAG00000000726)	ENSOJAG00000000715	FDX1 (ENSOJAG00000000707)	ENSOJAG00000000700	ENSOJAG00000000520	TRAK2 (ENSOJAG00000000484)	ENSOJAG00000000474	nudt15 (ENSOJAG00000000470)	cckbra (ENSOJAG00000000465)	cpo (ENSOJAG00000000417)	NALF1 (ENSOJAG00000000389)	lig4 (ENSOJAG00000000378)	irs2a (ENSOJAG00000000371)	acp2 (ENSOJAG00000000364)
Oryzias_a	ANCESTRAL SPECIES	28	ENSGT00390000008042.A.b.d	ENSGT00940000156913.b.j.a	ENSGT00940000160811.c.b	ENSGT00940000154242.a.c	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155041.b	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00390000003338	ENSGT00940000161508.b	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b	ENSGT00940000158446
Japanese Medaka HdrR	MODERN SPECIES	11	C1QL2 (ENSORLG00000027553)	en1a (ENSORLG00000020825)	ENSORLG00000024509	ENSORLG00000025838	ENSORLG00000004413	ENSORLG00000004398	enpp4 (ENSORLG00000004391)	ENSORLG00000004371	mgat5 (ENSORLG00000004359)	TMEM163 (ENSORLG00000004336)	ccnt2b (ENSORLG00000004330)	ENSORLG00000004324	ENSORLG00000004297	ENSORLG00000028554	rnd3a (ENSORLG00000027249) #20	mmadhca (ENSORLG00000004249) #22	lypd6 (ENSORLG00000027539) #25	ENSORLG00000004232	ENSORLG00000028197	ENSORLG00000004189	ENSORLG00000024713	ENSORLG00000023425	STRADB (ENSORLG00000004118)	TRAK2 (ENSORLG00000024460)	ENSORLG00000004099	nudt15 (ENSORLG00000004095)	cpo (ENSORLG00000004091)	cckbra (ENSORLG00000024681)	ENSORLG00000027306	ENSORLG00000029328	lig4 (ENSORLG00000004041)
Chinese medaka	MODERN SPECIES	1280									mgat5 (ENSOSIG00000016723)	TMEM163 (ENSOSIG00000016694)	ccnt2b (ENSOSIG00000016692)	ENSOSIG00000016682	ZRANB3 (ENSOSIG00000016660)	R3HDM1 (ENSOSIG00000016652)	RND3 (ENSOSIG00000016648) #20	mmadhca (ENSOSIG00000016646) #22	lypd6 (ENSOSIG00000016643) #25	pspc1 (ENSOSIG00000016639)	ENSOSIG00000016635	ENSOSIG00000016634	NBEAL1 (ENSOSIG00000016630)	TRAK2 (ENSOSIG00000016563)	cpo (ENSOSIG00000016549)	cckbra (ENSOSIG00000016547)	NALF1 (ENSOSIG00000016542)	lig4 (ENSOSIG00000016541)	irs2a (ENSOSIG00000016539)	acp2 (ENSOSIG00000016537)	gpr137c (ENSOSIG00000016534)	TXNDC16 (ENSOSIG00000016532)	ptger2a (ENSOSIG00000016524)
Ovalentaria_B	ANCESTRAL SPECIES	22	ENSGT00940000160811.c.b	ENSGT00390000014037.d	ENSGT01030000234996	ENSGT00940000154242.a.c	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155041.b	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00390000003338	ENSGT00940000161508.b	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b
Pomacentridae	ANCESTRAL SPECIES	101									ENSGT00970000193621	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155041.b	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00390000003338	ENSGT00940000161508.b	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b
Pomacentridae_A	ANCESTRAL SPECIES	211									ENSGT00970000193621	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b
Amphiprion	ANCESTRAL SPECIES	244								ENSGT00940000155041.b	ENSGT00970000193621	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b
Clown anemonefish	MODERN SPECIES	1488								ENSAOCG00000004992	ENSAOCG00000000205	TMEM163 (ENSAOCG00000005007)	ccnt2b (ENSAOCG00000002622)	ZRANB3 (ENSAOCG00000005122)	ENSAOCG00000005192	ENSAOCG00000005214	rnd3a (ENSAOCG00000005231) #20	mmadhca (ENSAOCG00000005247) #22	lypd6 (ENSAOCG00000005261) #25	pspc1 (ENSAOCG00000005279)	ENSAOCG00000005292	FDX1 (ENSAOCG00000000228)	ENSAOCG00000005315
Orange clownfish	MODERN SPECIES	16	ENSAPEG00000017225	poglut1 (ENSAPEG00000017201)	abcc4 (ENSAPEG00000016844)	timmdc1 (ENSAPEG00000016790)	abcc4 (ENSAPEG00000016691)	NBEAL1 (ENSAPEG00000016493)	ENSAPEG00000016452	ENSAPEG00000016440	ENSAPEG00000016426	TMEM163 (ENSAPEG00000016364)	ccnt2b (ENSAPEG00000016213)	ZRANB3 (ENSAPEG00000016183)	ENSAPEG00000016108	ENSAPEG00000016092	rnd3a (ENSAPEG00000016066) #20	mmadhca (ENSAPEG00000016004) #22	lypd6 (ENSAPEG00000015964) #25	pspc1 (ENSAPEG00000015927)	ENSAPEG00000015914	FDX1 (ENSAPEG00000015905)	ENSAPEG00000015872	ENSAPEG00000015856	ENSAPEG00000015843	cbsa (ENSAPEG00000015786)	u2af1 (ENSAPEG00000015747)	ENSAPEG00000015737	zgc:172122 (ENSAPEG00000015731)	ENSAPEG00000015717	ENSAPEG00000015704	ENSAPEG00000015688	gemin8 (ENSAPEG00000015680)
Spiny chromis	MODERN SPECIES	2155																mmadhca (ENSAPOG00000015900) #22	lypd6 (ENSAPOG00000015911) #25	pspc1 (ENSAPOG00000015946)	ENSAPOG00000015954	FDX1 (ENSAPOG00000015966)	ENSAPOG00000001112
Bicolor damselfish	MODERN SPECIES	534															rnd3a (ENSSPAG00000001989) #20	mmadhca (ENSSPAG00000001948) #22	lypd6 (ENSSPAG00000001936) #25	pspc1 (ENSSPAG00000001921)	ENSSPAG00000001909	ENSSPAG00000001895	NBEAL1 (ENSSPAG00000001786)	STRADB (ENSSPAG00000001743)	TRAK2 (ENSSPAG00000001720)	ENSSPAG00000001709	ENSSPAG00000001693	nudt15 (ENSSPAG00000001675)	cpo (ENSSPAG00000001647)	cckbra (ENSSPAG00000001640)	NALF1 (ENSSPAG00000001626)	lig4 (ENSSPAG00000001609)	irs2a (ENSSPAG00000001600)
Cichlidae	ANCESTRAL SPECIES	30	ENSGT00940000160811.c.b	ENSGT00390000014037.d	ENSGT01030000234996	ENSGT00940000154242.a.c	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155041.b	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00390000003338	ENSGT00940000161508.b	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	25	ENSGT00940000160811.c.b	ENSGT00390000014037.d	ENSGT01030000234996	ENSGT00940000154242.a.c	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155041.b	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00390000003338	ENSGT00940000161508.b.g	ENSGT00940000161508.b.h	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	29	ENSGT00390000014037.d	ENSGT01030000234996	ENSGT00940000154242.a.c.j	ENSGT00940000154242.a.c.i	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155041.b	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00390000003338	ENSGT00940000161508.b.g	ENSGT00940000161508.b.h	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881
Haplochromini	ANCESTRAL SPECIES	26	ENSGT00390000014037.d	ENSGT01030000234996	ENSGT00940000154242.a.c.j	ENSGT00940000154242.a.c.i	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155041.b	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00390000003338	ENSGT00940000161508.b.g	ENSGT00940000161508.b.h.a.a	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881
Burton s mouthbrooder	MODERN SPECIES	433	EN1 (ENSHBUG00000015070)	ENSHBUG00000015084	ENSHBUG00000015095	ENSHBUG00000015109	ENSHBUG00000015139	XKR6 (ENSHBUG00000015144)	enpp4 (ENSHBUG00000015154)	clic5a (ENSHBUG00000015180)	mgat5 (ENSHBUG00000015239)	TMEM163 (ENSHBUG00000015279)	ccnt2b (ENSHBUG00000015447)	ZRANB3 (ENSHBUG00000015687)	R3HDM1 (ENSHBUG00000015737)	ENSHBUG00000015755	rnd3a (ENSHBUG00000000464) #20	mmadhca (ENSHBUG00000015855) #22	lypd6 (ENSHBUG00000015866) #25	pspc1 (ENSHBUG00000001139)	FDX1 (ENSHBUG00000015882)	ENSHBUG00000015888	NBEAL1 (ENSHBUG00000016040)	STRADB (ENSHBUG00000016078)	TRAK2 (ENSHBUG00000016106)	ENSHBUG00000016122	ENSHBUG00000016146	nudt15 (ENSHBUG00000016152)	cpo (ENSHBUG00000016164)	cpo (ENSHBUG00000016220)
Haplochromini_A	ANCESTRAL SPECIES	29	ENSGT00390000014037.d	ENSGT01030000234996	ENSGT00940000154242.a.c.j	ENSGT00940000154242.a.c.i	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155041.b	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00390000003338	ENSGT00940000161508.b.g	ENSGT00940000161508.b.h.a.a	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881
Haplochromini_B	ANCESTRAL SPECIES	38	ENSGT00390000014037.d	ENSGT01030000234996	ENSGT00940000154242.a.c.j	ENSGT00940000154242.a.c.i	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155041.b	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00390000003338	ENSGT00940000161508.b.g	ENSGT00940000161508.b.h.b	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881
Eastern happy	MODERN SPECIES	14	EN1 (ENSACLG00000027418)	ENSACLG00000027410	ENSACLG00000027407	ENSACLG00000027399	ENSACLG00000027391	XKR6 (ENSACLG00000027384)	enpp4 (ENSACLG00000027378)	clic5a (ENSACLG00000027371)	mgat5 (ENSACLG00000027358)	TMEM163 (ENSACLG00000027348)	ENSACLG00000027342	ENSACLG00000027313	ENSACLG00000027282	ENSACLG00000027278	rnd3a (ENSACLG00000027271) #20	mmadhca (ENSACLG00000027255) #22	ENSACLG00000027251	lypd6 (ENSACLG00000027245) #25	pspc1 (ENSACLG00000027220)	FDX1 (ENSACLG00000027217)	ENSACLG00000027214	NBEAL1 (ENSACLG00000027172)	STRADB (ENSACLG00000027159)	TRAK2 (ENSACLG00000027146)	ENSACLG00000027131	nudt15 (ENSACLG00000027121)	cpo (ENSACLG00000027115)	cpo (ENSACLG00000027083)	cckbra (ENSACLG00000027072)	ENSACLG00000027063	NALF1 (ENSACLG00000027062)
Zebra mbuna	MODERN SPECIES	746																mmadhca (ENSMZEG00005028172) #22	lypd6 (ENSMZEG00005028171) #25	ENSMZEG00005028170
P. nyererei	MODERN SPECIES	389	EN1 (ENSPNYG00000008032)	ENSPNYG00000008104	ENSPNYG00000008175	ENSPNYG00000008218	ENSPNYG00000008282	XKR6 (ENSPNYG00000008326)	enpp4 (ENSPNYG00000008351)	clic5a (ENSPNYG00000008377)	mgat5 (ENSPNYG00000008406)	TMEM163 (ENSPNYG00000008449)	ccnt2b (ENSPNYG00000008506)	ZRANB3 (ENSPNYG00000008630)	ENSPNYG00000008701	ENSPNYG00000008736	rnd3a (ENSPNYG00000008756) #20	mmadhca (ENSPNYG00000008804) #22	lypd6 (ENSPNYG00000008856) #25	pspc1 (ENSPNYG00000008893)	FDX1 (ENSPNYG00000008958)	ENSPNYG00000008973	NBEAL1 (ENSPNYG00000009041)	STRADB (ENSPNYG00000009290)	TRAK2 (ENSPNYG00000009328)	ENSPNYG00000009373	nudt15 (ENSPNYG00000009386)	cpo (ENSPNYG00000009400)	cpo (ENSPNYG00000009417)
Lyretail cichlid	MODERN SPECIES	329	STEAP3 (ENSNBRG00000013568)	C1QL2 (ENSNBRG00000013578)	EN1 (ENSNBRG00000013612)	ENSNBRG00000013642	ENSNBRG00000013667	ENSNBRG00000013684	ENSNBRG00000013695	XKR6 (ENSNBRG00000013743)	enpp4 (ENSNBRG00000013775)	clic5a (ENSNBRG00000013785)	mgat5 (ENSNBRG00000013813)	TMEM163 (ENSNBRG00000013859)	ccnt2b (ENSNBRG00000013889)	ENSNBRG00000013928	rnd3a (ENSNBRG00000013994) #20	mmadhca (ENSNBRG00000014046) #22	pspc1 (ENSNBRG00000014059)	FDX1 (ENSNBRG00000014079)	ENSNBRG00000014092	NBEAL1 (ENSNBRG00000014105)	STRADB (ENSNBRG00000014200)	TRAK2 (ENSNBRG00000014231)	ENSNBRG00000014266	nudt15 (ENSNBRG00000014276)	cpo (ENSNBRG00000014293)	ENSNBRG00000014326
Nile tilapia	MODERN SPECIES	14	ENSONIG00000023479	ENSONIG00000026060	ENSONIG00000041756	ENSONIG00000042753	ENSONIG00000012041	enpp4 (ENSONIG00000012038)	XKR6 (ENSONIG00000012039)	mgat5 (ENSONIG00000012031)	TMEM163 (ENSONIG00000012029)	ccnt2b (ENSONIG00000012028)	ENSONIG00000038192	ENSONIG00000012025	ENSONIG00000012017	ENSONIG00000022880	rnd3 (ENSONIG00000035223) #20	mmadhca (ENSONIG00000012014) #22	lypd6 (ENSONIG00000012012) #25	pspc1 (ENSONIG00000012010)	ENSONIG00000012007	FDX1 (ENSONIG00000012006)	ENSONIG00000032650	NBEAL1 (ENSONIG00000012000)	STRADB (ENSONIG00000011998)	TRAK2 (ENSONIG00000011992)	ENSONIG00000011987	nudt15 (ENSONIG00000030763)	cpo (ENSONIG00000011982)	cckbra (ENSONIG00000011971)	NALF1 (ENSONIG00000011970)	lig4 (ENSONIG00000011969)	irs2a (ENSONIG00000011968)
Midas cichlid	MODERN SPECIES	353	en1a (ENSACIG00000019134)	ENSACIG00000019078	ENSACIG00000019060	ENSACIG00000019035	XKR6 (ENSACIG00000019016)	enpp4 (ENSACIG00000019003)	clic5a (ENSACIG00000018990)	mgat5 (ENSACIG00000018953)	TMEM163 (ENSACIG00000018918)	ccnt2b (ENSACIG00000018889)	ccnt2b (ENSACIG00000018869)	ZRANB3 (ENSACIG00000018832)	ENSACIG00000018791	ENSACIG00000018775	rnd3a (ENSACIG00000018760) #20	mmadhca (ENSACIG00000018742) #22	lypd6 (ENSACIG00000018720) #25	pspc1 (ENSACIG00000018695)	ENSACIG00000018684	FDX1 (ENSACIG00000018675)
Percomorphaceae_C	ANCESTRAL SPECIES	23	ENSGT01030000234996	ENSGT00940000154242.a.c	ENSGT00940000175432	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000168614	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155041	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00390000003338	ENSGT00940000161508.b	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b
Eupercaria	ANCESTRAL SPECIES	23	ENSGT00940000160811.c.b	ENSGT00390000014037.d	ENSGT01030000234996	ENSGT00940000154242.a.c	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155041	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00390000003338	ENSGT00940000161508.b	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b
Tetraodontidae	ANCESTRAL SPECIES	22	ENSGT00390000008042.A.b.d	ENSGT00940000156913.b.j.a	ENSGT00940000160811.c.b	ENSGT01030000234996	ENSGT00940000154242.a.c	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155041	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00390000003338	ENSGT00940000161508.b	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b
Tetraodon	MODERN SPECIES	18	ENSTNIG00000005583	DBI (ENSTNIG00000019060)	STEAP3 (ENSTNIG00000019061)	C1QL2 (ENSTNIG00000019062)	ENSTNIG00000003013	ENSTNIG00000014270	XKR6 (ENSTNIG00000014269)	enpp4 (ENSTNIG00000014268)	clic5a (ENSTNIG00000007008)	mgat5 (ENSTNIG00000007007)	TMEM163 (ENSTNIG00000010365)	ccnt2b (ENSTNIG00000010364)	ENSTNIG00000010363	ENSTNIG00000010362	rnd3a (ENSTNIG00000010361) #20	mmadhca (ENSTNIG00000010360) #22	lypd6 (ENSTNIG00000010359) #25	pspc1 (ENSTNIG00000010358)	ENSTNIG00000001451	ENSTNIG00000010357	ENSTNIG00000010356	NBEAL1 (ENSTNIG00000010355)	ENSTNIG00000001736	STRADB (ENSTNIG00000010354)	TRAK2 (ENSTNIG00000010353)	ENSTNIG00000001084	nudt15 (ENSTNIG00000010352)	cpo (ENSTNIG00000010351)	cckbra (ENSTNIG00000010350)	NALF1 (ENSTNIG00000010349)	lig4 (ENSTNIG00000010348)
Fugu	MODERN SPECIES	20	STEAP3 (ENSTRUG00000012949)	C1QL2 (ENSTRUG00000012932)	en1a (ENSTRUG00000012905)	ENSTRUG00000022159	ENSTRUG00000022709	ENSTRUG00000012817	XKR6 (ENSTRUG00000012716)	enpp4 (ENSTRUG00000012609)	clic5a (ENSTRUG00000012502)	mgat5 (ENSTRUG00000012306)	TMEM163 (ENSTRUG00000012240)	ccnt2b (ENSTRUG00000024469)	ZRANB3 (ENSTRUG00000011885)	ENSTRUG00000011654	rnd3 (ENSTRUG00000029930) #20	mmadhca (ENSTRUG00000021149) #22	lypd6 (ENSTRUG00000026168) #25	pspc1 (ENSTRUG00000011335)	ENSTRUG00000023649	ENSTRUG00000020350	NBEAL1 (ENSTRUG00000010979)	STRADB (ENSTRUG00000010953)	TRAK2 (ENSTRUG00000010804)	ENSTRUG00000029239	ENSTRUG00000024622	nudt15 (ENSTRUG00000024544)	cpo (ENSTRUG00000010265)	cckbra (ENSTRUG00000032665)	NALF1 (ENSTRUG00000010009)	lig4 (ENSTRUG00000009984)	irs2a (ENSTRUG00000009972)
Eupecaria_A	ANCESTRAL SPECIES	23	ENSGT00940000160811.c.b	ENSGT00390000014037.d	ENSGT01030000234996	ENSGT00940000154242.a.c	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155041	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00390000003338	ENSGT00940000161508.b	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b
Ballan wrasse	MODERN SPECIES	64															rnd3a (ENSLBEG00000004563) #20	mmadhca (ENSLBEG00000004540) #22	lypd6 (ENSLBEG00000004525) #25	pspc1 (ENSLBEG00000004474)	NBEAL1 (ENSLBEG00000004299)	ENSLBEG00000004249	ENSLBEG00000004204	STRADB (ENSLBEG00000004012)	TRAK2 (ENSLBEG00000003916)	ENSLBEG00000003890	nudt15 (ENSLBEG00000003843)	cpo (ENSLBEG00000003738)	cpo (ENSLBEG00000003654)	ENSLBEG00000003495	GABRG3 (ENSLBEG00000003406)	ENSLBEG00000003336	GABRB3 (ENSLBEG00000003266)
Eupecaria_B	ANCESTRAL SPECIES	23	ENSGT00940000160811.c.b	ENSGT00390000014037.d	ENSGT01030000234996	ENSGT00940000154242.a.c	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155041	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00390000003338	ENSGT00940000161508.b	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b
Eupecaria_C	ANCESTRAL SPECIES	27	ENSGT00940000160811.c.b	ENSGT00390000014037.d	ENSGT01030000234996	ENSGT00940000154242.a.c	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155041	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00390000003338	ENSGT00940000161508.b	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	31	ENSGT00940000160811.c.b	ENSGT00390000014037.d	ENSGT01030000234996	ENSGT00940000154242.a.c	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155041	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00390000003338	ENSGT00940000161508.b	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b
European seabass	MODERN SPECIES	15	STEAP3 (ENSDLAG00005029717)	ENSDLAG00005023726	ENSDLAG00005023724	ENSDLAG00005031685	ENSDLAG00005023713	ENSDLAG00005023712	ENSDLAG00005023710	ENSDLAG00005030212	mgat5 (ENSDLAG00005026513)	ENSDLAG00005026670	ccnt2b (ENSDLAG00005023684)	ENSDLAG00005023627	ENSDLAG00005023597	ENSDLAG00005023591	rnd3a (ENSDLAG00005034402) #20	mmadhca (ENSDLAG00005034278) #22	LYPD6 (ENSDLAG00005031232) #25	ENSDLAG00005023576	ENSDLAG00005023567	ENSDLAG00005033325	ENSDLAG00005032514	ENSDLAG00005022031	ENSDLAG00005033362	ENSDLAG00005031254	ENSDLAG00005021929	ENSDLAG00005021925	ENSDLAG00005030553	ENSDLAG00005021907	cckbra (ENSDLAG00005021893)	ENSDLAG00005028381	lig4 (ENSDLAG00005021884)
Large yellow croaker	MODERN SPECIES	486	EN1 (ENSLCRG00005006128)	ENSLCRG00005006127	ENSLCRG00005006126	ENSLCRG00005006124	ENSLCRG00005006123	XKR6 (ENSLCRG00005006121)	enpp4 (ENSLCRG00005006120)	clic5a (ENSLCRG00005006112)	mgat5 (ENSLCRG00005006111)	TMEM163 (ENSLCRG00005006110)	ccnt2b (ENSLCRG00005006109)	ZRANB3 (ENSLCRG00005006064)	ENSLCRG00005006060	ENSLCRG00005006057	rnd3a (ENSLCRG00005006055) #20	mmadhca (ENSLCRG00005006054) #22	lypd6 (ENSLCRG00005006053) #25	pspc1 (ENSLCRG00005006052)	ENSLCRG00005006048	FDX1 (ENSLCRG00005006047)	ENSLCRG00005006045	NBEAL1 (ENSLCRG00005004183)	STRADB (ENSLCRG00005004124)	TRAK2 (ENSLCRG00005003901)	ENSLCRG00005003896	nudt15 (ENSLCRG00005003893)	cckbra (ENSLCRG00005003891)	cpo (ENSLCRG00005003887)	NALF1 (ENSLCRG00005003885)	lig4 (ENSLCRG00005003884)	irs2a (ENSLCRG00005003881)
Gilthead seabream	MODERN SPECIES	16	C1QL2 (ENSSAUG00010026961)	EN1 (ENSSAUG00010026963)	ENSSAUG00010026965	ENSSAUG00010026966	ENSSAUG00010026968	ENSSAUG00010026973	XKR6 (ENSSAUG00010026978)	enpp4 (ENSSAUG00010026981)	clic5a (ENSSAUG00010026986)	mgat5 (ENSSAUG00010026990)	TMEM163 (ENSSAUG00010026995)	ccnt2b (ENSSAUG00010026997)	ZRANB3 (ENSSAUG00010027005)	ENSSAUG00010027045	rnd3a (ENSSAUG00010027051) #20	mmadhca (ENSSAUG00010027052) #22	lypd6 (ENSSAUG00010027054) #25	pspc1 (ENSSAUG00010027057)	FDX1 (ENSSAUG00010027059)	ENSSAUG00010027062	NBEAL1 (ENSSAUG00010027079)	STRADB (ENSSAUG00010027096)	TRAK2 (ENSSAUG00010027109)	ENSSAUG00010027155	nudt15 (ENSSAUG00010027156)	cpo (ENSSAUG00010027159)	cckbra (ENSSAUG00010004798)	NALF1 (ENSSAUG00010004805)	lig4 (ENSSAUG00010004807)	irs2a (ENSSAUG00010004809)	acp2 (ENSSAUG00010004810)
Perciformes	ANCESTRAL SPECIES	24	ENSGT00940000156913.b.j.a	ENSGT00940000160811.c.b	ENSGT00390000014037.d	ENSGT01030000234996	ENSGT00940000154242.a.c	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155041	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00390000003338	ENSGT00940000161508.b	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b
Perciformes_a	ANCESTRAL SPECIES	25	ENSGT00940000156913.b.j.a	ENSGT00940000160811.c.b	ENSGT00390000014037.d	ENSGT01030000234996	ENSGT00940000154242.a.c	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155041	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00390000003338	ENSGT00940000161508.b	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b
Pike perch	MODERN SPECIES	9	C1QL2 (ENSSLUG00000025623)	EN1 (ENSSLUG00000025626)	ENSSLUG00000025630	ENSSLUG00000025634	ENSSLUG00000025637	ENSSLUG00000025638	XKR6 (ENSSLUG00000025643)	enpp4 (ENSSLUG00000025644)	clic5a (ENSSLUG00000025646)	mgat5 (ENSSLUG00000025652)	TMEM163 (ENSSLUG00000025655)	ccnt2b (ENSSLUG00000025657)	ZRANB3 (ENSSLUG00000025660)	ENSSLUG00000025667	rnd3a (ENSSLUG00000025671) #20	mmadhca (ENSSLUG00000025676) #22	lypd6 (ENSSLUG00000025680) #25	pspc1 (ENSSLUG00000025685)	ENSSLUG00000025687	ENSSLUG00000025691	ENSSLUG00000025695	NBEAL1 (ENSSLUG00000025715)	STRADB (ENSSLUG00000025773)	TRAK2 (ENSSLUG00000025815)	ENSSLUG00000025841	ENSSLUG00000025844	nudt15 (ENSSLUG00000025847)	cpo (ENSSLUG00000025850)	cckbra (ENSSLUG00000025853)	NALF1 (ENSSLUG00000025857)	lig4 (ENSSLUG00000025858)
Channel bull blenny	MODERN SPECIES	11	ENSCGOG00000003071	STEAP3 (ENSCGOG00000003170)	EN1 (ENSCGOG00000003179)	ENSCGOG00000003183	ENSCGOG00000003197	ENSCGOG00000003204	XKR6 (ENSCGOG00000003206)	enpp4 (ENSCGOG00000003211)	clic5a (ENSCGOG00000003218)	mgat5 (ENSCGOG00000003235)	TMEM163 (ENSCGOG00000003568)	ccnt2b (ENSCGOG00000003577)	ZRANB3 (ENSCGOG00000003816)	ENSCGOG00000004104	rnd3a (ENSCGOG00000004129) #20	mmadhca (ENSCGOG00000004164) #22	lypd6 (ENSCGOG00000004167) #25	pspc1 (ENSCGOG00000004178)	ENSCGOG00000004196	FDX1 (ENSCGOG00000004206)	ENSCGOG00000004213	NBEAL1 (ENSCGOG00000004321)	STRADB (ENSCGOG00000005981)	TRAK2 (ENSCGOG00000006521)	ENSCGOG00000007678	chn1 (ENSCGOG00000007702)	FARP1 (ENSCGOG00000008418)	ggact.3 (ENSCGOG00000010730)	arl13b (ENSCGOG00000010733)	NCAM2 (ENSCGOG00000010755)	ENSCGOG00000011560
Cottioidei	ANCESTRAL SPECIES	24	ENSGT00940000160811.c.b	ENSGT00390000014037.d	ENSGT01030000234996	ENSGT00940000154242.a.c	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155041	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00390000003338	ENSGT00940000161508.b	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b
Lumpfish	MODERN SPECIES	11	C1QL2 (ENSCLMG00005003659)	en1a (ENSCLMG00005003658)	ENSCLMG00005003657	ENSCLMG00005003656	ENSCLMG00005003655	ENSCLMG00005003653	XKR6 (ENSCLMG00005003630)	enpp4 (ENSCLMG00005003629)	clic5a (ENSCLMG00005003628)	mgat5 (ENSCLMG00005003625)	TMEM163 (ENSCLMG00005003624)	ccnt2b (ENSCLMG00005003606)	ENSCLMG00005003524	ENSCLMG00005003512	rnd3a (ENSCLMG00005003510) #20	mmadhca (ENSCLMG00005003509) #22	lypd6 (ENSCLMG00005003507) #25	pspc1 (ENSCLMG00005003504)	ENSCLMG00005003502	FDX1 (ENSCLMG00005003501)	ENSCLMG00005003500	NBEAL1 (ENSCLMG00005003384)	STRADB (ENSCLMG00005003350)	TRAK2 (ENSCLMG00005003344)	ENSCLMG00005003340	nudt15 (ENSCLMG00005003339)	cpo (ENSCLMG00005003314)	cckbra (ENSCLMG00005003309)	NALF1 (ENSCLMG00005003308)	lig4 (ENSCLMG00005003307)	irs2a (ENSCLMG00005003306)
Stickleback	MODERN SPECIES		C1QL2 (ENSGACG00000014957)	EN1 (ENSGACG00000014956)	ENSGACG00000014951	ENSGACG00000014950	ENSGACG00000014949	ENSGACG00000014946	enpp4 (ENSGACG00000014941)	clic5a (ENSGACG00000014937)	mgat5 (ENSGACG00000014934)	TMEM163 (ENSGACG00000014933)	ccnt2b (ENSGACG00000014932)	ENSGACG00000014931	ZRANB3 (ENSGACG00000014926)	ENSGACG00000014925	rnd3a (ENSGACG00000014917) #20	mmadhca (ENSGACG00000014909) #22	lypd6 (ENSGACG00000014906) #25	pspc1 (ENSGACG00000014901)	ENSGACG00000014898	RDX (ENSGACG00000014895)	MCF2L (ENSGACG00000014889)	cab39l (ENSGACG00000014886)	cdadc1 (ENSGACG00000014883)	rcbtb1 (ENSGACG00000014869)	ENSGACG00000014859	tubgcp3 (ENSGACG00000014853)	ATP11A (ENSGACG00000014851)	SOX1 (ENSGACG00000014850)	arhgef7b (ENSGACG00000014843)	ENSGACG00000014838	ENSGACG00000014833
Percomorphaceae_D	ANCESTRAL SPECIES	23	ENSGT01030000234996	ENSGT00940000154242.a.c	ENSGT00940000175432	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000168614	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155041	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00390000003338	ENSGT00940000161508.b	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b
Anabantaria	ANCESTRAL SPECIES	23	ENSGT00940000160811.c.b	ENSGT00390000014037.d	ENSGT01030000234996	ENSGT00940000154242.a.c	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155041	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00390000003338	ENSGT00940000161508.b	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b
Anabantoidei	ANCESTRAL SPECIES	23	ENSGT00390000008042.A.b.d	ENSGT00940000156913.b.j.a	ENSGT00940000160811.c.b	ENSGT00940000154242.a.c	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000164275.f.d	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000166946	ENSGT00940000159848	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b #12	ENSGT01030000234765	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e
Climbing perch	MODERN SPECIES	11	STEAP3 (ENSATEG00000000840)	C1QL2 (ENSATEG00000000918)	EN1 (ENSATEG00000027645)	ENSATEG00000000790	ENSATEG00000000640	ENSATEG00000000590	ENSATEG00000000585	ENSATEG00000000553	mgat5 (ENSATEG00000000484)	ENSATEG00000000446	ccnt2b (ENSATEG00000000262)	ENSATEG00000000257	ENSATEG00000000232	ENSATEG00000000203	rnd3a (ENSATEG00000027236) #20	mmadhca (ENSATEG00000000140) #22	LYPD6 (ENSATEG00000027744) #25	ENSATEG00000000050	ENSATEG00000020033	ENSATEG00000019996	ENSATEG00000019972	ENSATEG00000019959	ENSATEG00000019898	ENSATEG00000019815	ENSATEG00000019752	ENSATEG00000019703 #12	ENSATEG00000019695	ENSATEG00000019666	ENSATEG00000019657	ENSATEG00000019608	ENSATEG00000028895
Siamese fighting fish	MODERN SPECIES	10	ndufs1 (ENSBSLG00000016535)	ENSBSLG00000018636	ENSBSLG00000018721	ENSBSLG00000018836	ENSBSLG00000018957	enpp4 (ENSBSLG00000019005)	ENSBSLG00000019061	clic5a (ENSBSLG00000019150)	mgat5 (ENSBSLG00000019651)	clic5a (ENSBSLG00000020185)	TMEM163 (ENSBSLG00000020228)	ccnt2b (ENSBSLG00000021109)	ZRANB3 (ENSBSLG00000021664)	ENSBSLG00000022575	rnd3a (ENSBSLG00000022732) #20	mmadhca (ENSBSLG00000022858) #22	lypd6 (ENSBSLG00000022949) #25	ENSBSLG00000023109	ENSBSLG00000023278	ENSBSLG00000023315	unc50 (ENSBSLG00000023389)	ENSBSLG00000023567	EN1 (ENSBSLG00000023687)	C1QL2 (ENSBSLG00000023705)	STEAP3 (ENSBSLG00000023728)	ENSBSLG00000023766	ENSBSLG00000023884	ENSBSLG00000024111	GABRG3 (ENSBSLG00000024200)	ENSBSLG00000024345	GABRB3 (ENSBSLG00000024665)
Zig-zag eel	MODERN SPECIES	11	EN1 (ENSMAMG00000005134)	ENSMAMG00000005123	ENSMAMG00000024621	ENSMAMG00000005081	ENSMAMG00000005052	ENSMAMG00000005036	ENSMAMG00000005031	ENSMAMG00000005001	ENSMAMG00000004983	ENSMAMG00000004966	ccnt2b (ENSMAMG00000004834)	ENSMAMG00000004740	ENSMAMG00000004532	ENSMAMG00000004507	rnd3a (ENSMAMG00000027887) #20	mmadhca (ENSMAMG00000004437) #22	LYPD6 (ENSMAMG00000025816) #25	ENSMAMG00000004333	ENSMAMG00000004303	ENSMAMG00000004286	ENSMAMG00000004278	SLITRK6 (ENSMAMG00000004266)	ENSMAMG00000004263	ENSMAMG00000004229	ENSMAMG00000004193	ENSMAMG00000004151	ENSMAMG00000004082	RUNX1 (ENSMAMG00000004023)	ENSMAMG00000027079	ENSMAMG00000003979	ENSMAMG00000003935
Carangaria	ANCESTRAL SPECIES	23	ENSGT01030000234996	ENSGT00940000154242.a.c	ENSGT00940000175432	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000168614	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155041	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00390000003338	ENSGT00940000161508.b	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b
Pleuronectoidei	ANCESTRAL SPECIES	42	ENSGT00940000160811.c.b	ENSGT00390000014037.d	ENSGT01030000234996	ENSGT00940000154242.a.c	ENSGT00940000175432	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000155041	ENSGT00940000166048.a.b	ENSGT00940000156916	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00390000003338	ENSGT00940000161508.b	ENSGT01100000263563.c.a.b
Turbot	MODERN SPECIES		EN1 (ENSSMAG00000027117)	ENSSMAG00000001215	ENSSMAG00000001278	ENSSMAG00000001282	ENSSMAG00000001312	ENSSMAG00000001325	ENSSMAG00000001372	ENSSMAG00000001392	ENSSMAG00000001446	mgat5 (ENSSMAG00000001481)	ENSSMAG00000021998	ccnt2b (ENSSMAG00000001603)	ENSSMAG00000001632	ENSSMAG00000001669	rnd3a (ENSSMAG00000001717) #20	mmadhca (ENSSMAG00000001742) #22	LYPD6 (ENSSMAG00000001729) #25	ENSSMAG00000001807	ENSSMAG00000024616	ENSSMAG00000001798	ENSSMAG00000001829	ENSSMAG00000001954	ENSSMAG00000001985	ENSSMAG00000002123	ENSSMAG00000002146	ENSSMAG00000023020	ENSSMAG00000003211	ENSSMAG00000003160	ENSSMAG00000003090	ENSSMAG00000002989	ENSSMAG00000002936
Tongue sole	MODERN SPECIES	5	ENSCSEG00000009328	DBI (ENSCSEG00000009319)	STEAP3 (ENSCSEG00000009309)	C1QL2 (ENSCSEG00000009299)	en1a (ENSCSEG00000009287)	ENSCSEG00000009282	ENSCSEG00000009277	XKR6 (ENSCSEG00000009261)	enpp4 (ENSCSEG00000009252)	clic5a (ENSCSEG00000009225)	mgat5 (ENSCSEG00000009182)	ccnt2b (ENSCSEG00000009159)	ZRANB3 (ENSCSEG00000009111)	ENSCSEG00000008944	rnd3a (ENSCSEG00000008923) #20	mmadhca (ENSCSEG00000008909) #22	ENSCSEG00000008899	pspc1 (ENSCSEG00000008888)	ENSCSEG00000008879	obsl1a (ENSCSEG00000008831)	cybb (ENSCSEG00000008796)	ENSCSEG00000008773	dusp27 (ENSCSEG00000008768)	ENSCSEG00000008759	ENSCSEG00000008753	plaat1l (ENSCSEG00000008744)	ved (ENSCSEG00000008735)	gnsb (ENSCSEG00000008698)	polm (ENSCSEG00000008667)	nudcd3 (ENSCSEG00000008655)	mrps24 (ENSCSEG00000008651)
Carangaria_A	ANCESTRAL SPECIES	23	ENSGT00390000014037.d	ENSGT01030000234996	ENSGT00940000154242.a.c	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000168614	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155041	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00390000003338	ENSGT00940000161508.b	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b
Seriola	ANCESTRAL SPECIES	37	ENSGT00390000014037.d	ENSGT01030000234996	ENSGT00940000154242.a.c	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000155759.e.b	ENSGT00940000168614	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.d #25	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00940000155041	ENSGT00940000155390	ENSGT00940000158202	ENSGT00940000164538	ENSGT00390000003338	ENSGT00940000161508.b	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b
Greater amberjack	MODERN SPECIES	45	ENSSDUG00000011188	ENSSDUG00000011220	ENSSDUG00000011180	ENSSDUG00000011149	XKR6 (ENSSDUG00000011123)	enpp4 (ENSSDUG00000011112)	clic5a (ENSSDUG00000011080)	clic5a (ENSSDUG00000011057)	mgat5 (ENSSDUG00000011000)	TMEM163 (ENSSDUG00000010975)	ccnt2b (ENSSDUG00000010842)	ENSSDUG00000010804	ENSSDUG00000010749	ENSSDUG00000010730	rnd3a (ENSSDUG00000010711) #20	mmadhca (ENSSDUG00000010681) #22	ENSSDUG00000010669 #25	pspc1 (ENSSDUG00000010651)	ENSSDUG00000010627	ENSSDUG00000010611	ENSSDUG00000010605	NBEAL1 (ENSSDUG00000010494)	STRADB (ENSSDUG00000010463)	TRAK2 (ENSSDUG00000010429)	ENSSDUG00000010397	ENSSDUG00000010380	nudt15 (ENSSDUG00000010377)	cpo (ENSSDUG00000010368)	cckbra (ENSSDUG00000010358)	NALF1 (ENSSDUG00000010353)	lig4 (ENSSDUG00000010343)
Yellowtail amberjack	MODERN SPECIES	3249	en1a (ENSSLDG00000005196)	ENSSLDG00000005135	ENSSLDG00000005086	ENSSLDG00000005057	ENSSLDG00000005011	enpp4 (ENSSLDG00000004999)	mgat5 (ENSSLDG00000004933)	clic5a (ENSSLDG00000004904)	TMEM163 (ENSSLDG00000004880)	ccnt2b (ENSSLDG00000004703)	ENSSLDG00000004638	ENSSLDG00000004579	ENSSLDG00000004499	ENSSLDG00000004472	rnd3a (ENSSLDG00000004433) #20	mmadhca (ENSSLDG00000004384) #22	ENSSLDG00000004343 #25	pspc1 (ENSSLDG00000004284)	ENSSLDG00000004236	FDX1 (ENSSLDG00000004217)	ENSSLDG00000004202	NBEAL1 (ENSSLDG00000003985)	STRADB (ENSSLDG00000003945)	TRAK2 (ENSSLDG00000003678)	ENSSLDG00000003613	ENSSLDG00000003593	nudt15 (ENSSLDG00000003584)	cpo (ENSSLDG00000003572)	cckbra (ENSSLDG00000003311)	NALF1 (ENSSLDG00000003265)	lig4 (ENSSLDG00000003239)
Barramundi perch	MODERN SPECIES	447										TMEM163 (ENSLCAG00010022724)	ccnt2b (ENSLCAG00010022687)	ZRANB3 (ENSLCAG00010022621)	ENSLCAG00010022590	ENSLCAG00010022586	rnd3a (ENSLCAG00010022580) #20	mmadhca (ENSLCAG00010022578) #22	ENSLCAG00010022575 #25	pspc1 (ENSLCAG00010022571)
Tiger tail seahorse	MODERN SPECIES	148	MSL3 (ENSHCOG00000013930)	ENSHCOG00000013877	ENSHCOG00000013773	ENSHCOG00000013728	XKR6 (ENSHCOG00000013553)	enpp4 (ENSHCOG00000013516)	clic5a (ENSHCOG00000013508)	mgat5 (ENSHCOG00000013483)	TMEM163 (ENSHCOG00000013442)	ccnt2b (ENSHCOG00000013436)	ccnt2b (ENSHCOG00000013409)	ZRANB3 (ENSHCOG00000013395)	R3HDM1 (ENSHCOG00000013366)	ENSHCOG00000013302	rnd3a (ENSHCOG00000013290) #20	mmadhca (ENSHCOG00000013268) #22	LYPD6 (ENSHCOG00000013260) #25	pspc1 (ENSHCOG00000013251)	ENSHCOG00000013243	ENSHCOG00000013228	NBEAL1 (ENSHCOG00000013213)	XIRP2 (ENSHCOG00000013116)	ENSHCOG00000013102	B3GALT1 (ENSHCOG00000013089)	ABCB11 (ENSHCOG00000013058)	ENSHCOG00000012905	atp5f1b (ENSHCOG00000012891)	ENSHCOG00000012868	klhl41b (ENSHCOG00000012812)	ENSHCOG00000012801	ENSHCOG00000012775
Pinecone sodierfish	MODERN SPECIES	11	ENSMMDG00005005261	ENSMMDG00005004963	fam184aa (ENSMMDG00005004948)	PLN (ENSMMDG00005004940)	ENSMMDG00005004937	ENSMMDG00005004933	ENSMMDG00005004926	enpp4 (ENSMMDG00005004918)	clic5a (ENSMMDG00005004776)	mgat5 (ENSMMDG00005004763)	TMEM163 (ENSMMDG00005004755)	ccnt2b (ENSMMDG00005004749)	ENSMMDG00005004603	ENSMMDG00005004544	rnd3a (ENSMMDG00005004529) #20	mmadhca (ENSMMDG00005004519) #22	ENSMMDG00005004504 #25	pspc1 (ENSMMDG00005004495)	ENSMMDG00005004478	ENSMMDG00005004462	ENSMMDG00005004453	NBEAL1 (ENSMMDG00005004407)	ENSMMDG00005003924	TRAK2 (ENSMMDG00005003175)	nudt15 (ENSMMDG00005003119)	cpo (ENSMMDG00005003099)	cckbra (ENSMMDG00005003078)	NALF1 (ENSMMDG00005003070)	lig4 (ENSMMDG00005003067)	irs2a (ENSMMDG00005003061)	acp2 (ENSMMDG00005003046)
Cod	MODERN SPECIES	20	bin1b (ENSGMOG00000013646)	ENSGMOG00000024937	nhej1 (ENSGMOG00000036538)	rpgrb (ENSGMOG00000004682)	ENSGMOG00000004672	cybb (ENSGMOG00000004641)	ENSGMOG00000031695	ENSGMOG00000008541	ENSGMOG00000033936	ENSGMOG00000035618	ENSGMOG00000016538	ENSGMOG00000036609	ENSGMOG00000007983	ENSGMOG00000028015	ENSGMOG00000036778	ENSGMOG00000023672 #22	ENSGMOG00000017541	ENSGMOG00000034417	ENSGMOG00000003853	ENSGMOG00000030946	ENSGMOG00000003824	ENSGMOG00000003913	ENSGMOG00000003944	ENSGMOG00000031397	ENSGMOG00000019898	ENSGMOG00000014624	ENSGMOG00000035814	ENSGMOG00000022576	ENSGMOG00000031382	ENSGMOG00000003556	ENSGMOG00000036311
Protacanthopterygii	ANCESTRAL SPECIES	27	ENSGT00940000155466.e.a	ENSGT00390000013693	ENSGT00940000154342.C	ENSGT00530000063484.b.b.d.b	ENSGT00940000159699	ENSGT00940000168322	ENSGT00950000183030.d	ENSGT00940000157128	ENSGT00730000111163	ENSGT00940000155759.e.b	ENSGT00940000168614	ENSGT00940000158559	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.c.a #25	ENSGT00940000158539.b #27	ENSGT00530000064137.a.b #30	ENSGT00390000016542 #31	ENSGT00940000157233.c #32	ENSGT00950000183208.A.c.a	ENSGT00390000008033	ENSGT00940000157521.a.b	ENSGT00940000167103	ENSGT00940000166136	ENSGT00390000012561.b.pb.b	ENSGT00950000183114.a.b.b	ENSGT00940000160639.b.a.b.b.a	ENSGT00390000013151.a.a.a	ENSGT00940000161997.a
Salmoninae	ANCESTRAL SPECIES	227	ENSGT00390000016929	ENSGT00940000155466.e.a	ENSGT00390000013693.c	ENSGT00940000154342.C.id.a.b.a.a.b	ENSGT00530000063484.b.b.d.b	ENSGT00940000159699	ENSGT00940000168322	ENSGT00950000183030.c.b.a	ENSGT00940000157128	ENSGT00730000111163	ENSGT00940000155759.e.b	ENSGT00940000158559.g	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.c.a #25	ENSGT00940000158539.b.a.b #27	ENSGT00940000158539.b.a.a #27	ENSGT00530000064137.a.b.v #30	ENSGT00390000016542 #31
Salmoninae_a	ANCESTRAL SPECIES	81	ENSGT01090000259985.b.b.a.b	ENSGT00390000010218	ENSGT00390000016929	ENSGT00940000155466.e.a.d	ENSGT00390000013693.c	ENSGT00950000183030.d	ENSGT00940000157128	ENSGT00730000111163	ENSGT00940000155759.e.b	ENSGT00940000158559.g	ENSGT00940000168614	ENSGT00940000158559.h	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.c.a #25	ENSGT00940000158539.b.a.b #27	ENSGT00940000158539.b.a.a #27	ENSGT00530000064137.a.b.v #30	ENSGT00390000016542 #31	ENSGT00390000008490	ENSGT00940000154435	ENSGT00940000154989.h	ENSGT00940000160159	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a.fd.a	ENSGT01030000235355	ENSGT00940000164706.a	ENSGT01060000248909	ENSGT00530000063970.f.c.b.b.a.b
Oncorhynchus	ANCESTRAL SPECIES	86						ENSGT00950000183030.c.a.a.a	ENSGT00940000157128	ENSGT00730000111163	ENSGT00940000155759.e.b	ENSGT00940000158559.g	ENSGT00940000168614	ENSGT00940000158559.h	ENSGT00940000156095.m.a	ENSGT01100000263596.e	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.c.a #25	ENSGT00940000158539.b.a.a #27	ENSGT00530000064137.a.b.v #30	ENSGT00390000016542 #31	ENSGT00390000008490	ENSGT00940000154435	ENSGT00940000154989.h	ENSGT00940000156445.r	ENSGT00940000160159	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a.gd	ENSGT00940000164706.a	ENSGT01060000248909	ENSGT01100000263520.a.b.a.a.a.b.a.b.d.b.b.a.b.a	ENSGT00530000063970.f.d.a.a
Oncorhynchus_a	ANCESTRAL SPECIES	132														ENSGT01100000263596.e	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b #22	ENSGT00390000000220.B.c.a #25	ENSGT00940000158539.b.a.a #27	ENSGT00530000064137.a.b.v #30	ENSGT00390000016542 #31	ENSGT00390000008490	ENSGT00940000154435	ENSGT00940000154989.h	ENSGT00940000156445.r	ENSGT00940000160159	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a.gd	ENSGT00940000164706.a	ENSGT01060000248909	ENSGT01100000263520.a.b.a.a.a.b.a.b.d.b.b.a.b.a	ENSGT00530000063970.f.d.a.a
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES	370																MMADHC (ENSOKIG00005021563) #22	LYPD6 (ENSOKIG00005043757) #25	KIF5C (ENSOKIG00005043347) #27	ENSOKIG00005043307 #30
Coho salmon	MODERN SPECIES	34	ENSOKIG00005048672	ENSOKIG00005048665	GTF3C3 (ENSOKIG00005048340)	ENSOKIG00005048189	DMD (ENSOKIG00005047018)	ENSOKIG00005046828	ENSOKIG00005046782	ENSOKIG00005046761	ENSOKIG00005046757	CHST10 (ENSOKIG00005046752)	ccnt2b (ENSOKIG00005046718)	ZRANB3 (ENSOKIG00005046546)	ENSOKIG00005046446	ENSOKIG00005046435	rnd3a (ENSOKIG00005046429) #20	mmadhca (ENSOKIG00005046425) #22	LYPD6 (ENSOKIG00005046418) #25	KIF5C (ENSOKIG00005045422) #27	MBD5 (ENSOKIG00005045318) #30	orc4 (ENSOKIG00005045130) #31	ENSOKIG00005045104	ENSOKIG00005045098	ENSOKIG00005045094	cbsa (ENSOKIG00005044876)	ENSOKIG00005044792	ENSOKIG00005044779	ENSOKIG00005044771	ENSOKIG00005044760	ENSOKIG00005044755	ENSOKIG00005044745	ENSOKIG00005044719
Chinook salmon	MODERN SPECIES	5	vps16 (ENSOTSG00005002055)	ENSOTSG00005002040	rgn (ENSOTSG00005002006)	ENSOTSG00005002004	ENSOTSG00005002001	mpc2a (ENSOTSG00005002000)	ENSOTSG00005001997	faimb (ENSOTSG00005001996)	GRPR (ENSOTSG00005001992)	gpa33a (ENSOTSG00005001990)	marchf4l (ENSOTSG00005013806)	pcca (ENSOTSG00005013802)	ENSOTSG00005013801	ENSOTSG00005013800	tm9sf2 (ENSOTSG00005013516)	mmadhca (ENSOTSG00005013515) #22	lypd6 (ENSOTSG00005013511) #25	trim63a (ENSOTSG00005013508)	ENSOTSG00005013500	ENSOTSG00005013498 #27	MBD5 (ENSOTSG00005013497) #30	HSF2BP (ENSOTSG00005013496)	ENSOTSG00005013495	SIK1 (ENSOTSG00005013494)	cbsa (ENSOTSG00005013493)
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	28	ENSOMYG00000052901	ENSOMYG00000066012	ENSOMYG00000063398	faimb (ENSOMYG00000056887)	ENSOMYG00000053361	ENSOMYG00000076474	gbx2 (ENSOMYG00000012559)	ENSOMYG00000002871	ENSOMYG00000002791	ENSOMYG00000068512	ccnt2b (ENSOMYG00000002822)	ENSOMYG00000048525	ENSOMYG00000062480	ENSOMYG00000073774	rnd3a (ENSOMYG00000049796) #20	mmadhca (ENSOMYG00000058850) #22	LYPD6 (ENSOMYG00000052898) #25	KIF5C (ENSOMYG00000063803) #27	ENSOMYG00000057620 #30	ORC4 (ENSOMYG00000024511) #31	ENSOMYG00000034059	ENSOMYG00000008789	ENSOMYG00000034036	ENSOMYG00000058905	ENSOMYG00000034021	cbs (ENSOMYG00000001830)	ENSOMYG00000001552	ENSOMYG00000008794	ENSOMYG00000053813	ENSOMYG00000050379	ENSOMYG00000048761
Rainbow trout	MODERN SPECIES	9	ENSOMYG00000070228	ENSOMYG00000061250	ENSOMYG00000074825	ENSOMYG00000049175	ENSOMYG00000076124	ENSOMYG00000069122	ENSOMYG00000059058	ENSOMYG00000052458	ccnt2b (ENSOMYG00000049382)	ENSOMYG00000059432	ENSOMYG00000034308	ENSOMYG00000034300	ENSOMYG00000077776	ENSOMYG00000054856	rnd3a (ENSOMYG00000034269) #20	mmadhca (ENSOMYG00000034217) #22	LYPD6 (ENSOMYG00000034186) #25	KIF5C (ENSOMYG00000067609) #27	ENSOMYG00000034153 #30	ORC4 (ENSOMYG00000034092) #31	HSF2BP (ENSOMYG00000008767)	ENSOMYG00000034044	SIK1 (ENSOMYG00000077880)	ENSOMYG00000057947	CRYAA (ENSOMYG00000042378)	cbsa (ENSOMYG00000001715)	ENSOMYG00000001839	ENSOMYG00000048656	ENSOMYG00000006919	ENSOMYG00000067790	ENSOMYG00000077815
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	74	ENSGT01060000249324.b.a	ENSGT01090000259985.b.b.a.b	ENSGT00390000010218	ENSGT00390000016929.f	ENSGT00940000154342.C.id.a.b.a.a.b	ENSGT00530000063484.b.b.d.b	ENSGT00940000159699	ENSGT00950000183030.c.b.a	ENSGT00940000157128	ENSGT00730000111163	ENSGT00940000155759.e.b	ENSGT00940000158559.g	ENSGT00940000156095.m.a	ENSGT01100000263596	ENSGT00940000157541.e #20	ENSGT00390000015050.`b.b.g #22	ENSGT00390000000220.B.c.a.e #25	ENSGT00940000158539.b.a.b #27	ENSGT00530000064137.a.b.v #30	ENSGT00390000016542 #31	ENSGT00390000008490	ENSGT00940000154435	ENSGT00940000154989.h	ENSGT00940000160159	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a.gd	ENSGT01030000235355.i	ENSGT00940000164706.a.h	ENSGT00530000063970.e.a.a	ENSGT00390000003164	ENSGT00940000154095.b.b.a.a
Atlantic salmon	DUPLICATION
Atlantic salmon	MODERN SPECIES	761																ENSSSAG00000096850 #22	ENSSSAG00000122240 #25
Atlantic salmon	MODERN SPECIES	7	ENSSSAG00000085181	ENSSSAG00000054615	ENSSSAG00000119598	ENSSSAG00000114258	ENSSSAG00000083249	ENSSSAG00000008329	ENSSSAG00000095929	ENSSSAG00000085926	ENSSSAG00000041565	ENSSSAG00000007904	ccnt2b (ENSSSAG00000076456)	ENSSSAG00000007917	ENSSSAG00000041743	ENSSSAG00000042023	rnd3a (ENSSSAG00000113109) #20	mmadhca (ENSSSAG00000092166) #22	LYPD6 (ENSSSAG00000043041) #25	KIF5C (ENSSSAG00000082971) #27	ENSSSAG00000050445 #30	ORC4 (ENSSSAG00000108029) #31	HSF2BP (ENSSSAG00000091676)	ENSSSAG00000095841	ENSSSAG00000096622	CRYAA (ENSSSAG00000043363)	cbsa (ENSSSAG00000001011)	ENSSSAG00000042195	ENSSSAG00000107867	ENSSSAG00000014048	ENSSSAG00000101770	ENSSSAG00000092487	ENSSSAG00000008166
River trout	MODERN SPECIES	483	chst10 (ENSSTUG00000043846)	ENSSTUG00000043871	ccnt2b (ENSSTUG00000043894)	ENSSTUG00000043977	ENSSTUG00000043995	ENSSTUG00000044002	ccnt2b (ENSSTUG00000044020)	rnd3a (ENSSTUG00000044053) #20	ENSSTUG00000044056	ENSSTUG00000044062	ENSSTUG00000044155	ENSSTUG00000044158	ENSSTUG00000044180	ENSSTUG00000044292	rnd3a (ENSSTUG00000044296) #20	mmadhca (ENSSTUG00000044301) #22	lypd6 (ENSSTUG00000044308) #25
Salmo	ANCESTRAL SPECIES	519																ENSGT00390000015050.`b.b.h #22	ENSGT00390000000220.B.c.a.f #25
Atlantic salmon	DUPLICATION
Atlantic salmon	MODERN SPECIES	242																ENSSSAG00000053732 #22	ENSSSAG00000089623 #25
Atlantic salmon	MODERN SPECIES	8	ENSSSAG00000115411	ENSSSAG00000099141	ENSSSAG00000090548	ENSSSAG00000099225	ENSSSAG00000086775	ENSSSAG00000104409	ENSSSAG00000091802	ENSSSAG00000083565	ENSSSAG00000118024	chsta (ENSSSAG00000007896)	ccnt2b (ENSSSAG00000084951)	ENSSSAG00000112090	ENSSSAG00000111385	ENSSSAG00000111336	rnd3a (ENSSSAG00000028722) #20	mmadhca (ENSSSAG00000043120) #22	LYPD6 (ENSSSAG00000120479) #25	KIF5C (ENSSSAG00000105535) #27	ENSSSAG00000084473 #30	orc4 (ENSSSAG00000050203) #31	ENSSSAG00000043328	ENSSSAG00000115158	ENSSSAG00000086536	ENSSSAG00000010857	ENSSSAG00000082395	ENSSSAG00000043070	ENSSSAG00000104329	ENSSSAG00000081944	ENSSSAG00000097173	ENSSSAG00000107071	ENSSSAG00000043052
Huchen	MODERN SPECIES	7613																ENSHHUG00000006578 #22	lypd6 (ENSHHUG00000006566) #25
Northern pike	MODERN SPECIES	21	gtf3c3 (ENSELUG00000012293)	HECW2 (ENSELUG00000012420)	ENSELUG00000012538	DMD (ENSELUG00000013630)	ENSELUG00000029586	tmem47 (ENSELUG00000013767)	rpl31 (ENSELUG00000013824)	chst10 (ENSELUG00000013861)	zc3h13 (ENSELUG00000013945)	ccnt2b (ENSELUG00000014286)	ZRANB3 (ENSELUG00000014333)	ENSELUG00000014359	ENSELUG00000014373	R3HDM1 (ENSELUG00000014413)	RND3 (ENSELUG00000014441) #20	mmadhca (ENSELUG00000014508) #22	LYPD6 (ENSELUG00000026726) #25	KIF5C (ENSELUG00000014707) #27	MBD5 (ENSELUG00000014723) #30	orc4 (ENSELUG00000014828) #31	ACVR2A (ENSELUG00000014935) #32	ENSELUG00000030788	zeb2b (ENSELUG00000014998)	ENSELUG00000029431	KYNU (ENSELUG00000015091)	LRP1B (ENSELUG00000015279)	ENSELUG00000015484	ENSELUG00000015531	bzw1a (ENSELUG00000015556)	AOX1 (ENSELUG00000015666)	ARL4C (ENSELUG00000015699)
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00390000015050.ab #22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00390000015050.ab #22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00390000015050.ab #22
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00390000015050.ab #22
Euacanthomorphacea	ANCESTRAL SPECIES																	ENSGT00390000015050.ab #22
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00390000015050.ab #22
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00390000015050.ab #22
Percomorphaceae_C	ANCESTRAL SPECIES																	ENSGT00390000015050.ab #22
Percomorphaceae_D	ANCESTRAL SPECIES																	ENSGT00390000015050.ab #22
Carangaria	ANCESTRAL SPECIES																	ENSGT00390000015050.ab #22
Pleuronectoidei	ANCESTRAL SPECIES																	ENSGT00390000015050.ab #22
Tongue sole	MODERN SPECIES	7	ENSCSEG00000015761	ENSCSEG00000015757	ENSCSEG00000015751	ENSCSEG00000015745	ENSCSEG00000015738	ENSCSEG00000015712	ENSCSEG00000015706	gtdc1 (ENSCSEG00000015692)	kif5c (ENSCSEG00000015644)	ENSCSEG00000015620	ENSCSEG00000015597	ENSCSEG00000015588	ENSCSEG00000015553	UBXN4 (ENSCSEG00000015542)	ENSCSEG00000015535 #17	ENSCSEG00000015528 #22	arglu1a (ENSCSEG00000015511)	efnb2a (ENSCSEG00000015494)	gtpbp8 (ENSCSEG00000015488)	slc10a2 (ENSCSEG00000015484)	ENSCSEG00000015477	inhbb (ENSCSEG00000015473)	gli2a (ENSCSEG00000015457)	ENSCSEG00000015429	nifk (ENSCSEG00000015419)	clasp1a (ENSCSEG00000015392)	tfcp2l1 (ENSCSEG00000015326)	zgc:172295 (ENSCSEG00000015293)	ddx18 (ENSCSEG00000015266)	actr3 (ENSCSEG00000015255)	ENSCSEG00000015233