Euarchontoglires_A	ANCESTRAL SPECIES	30				ENSGT00940000157312	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b #14	ENSGT00530000064244.a	ENSGT00940000161980 #15	ENSGT00390000014109 #16	ENSGT00950000183041.A.e #17	ENSGT00390000016313.a.b #18	ENSGT00390000018439 #19	ENSGT00730000111536	ENSGT00940000155864.a.b #20	ENSGT00390000009630 #21	ENSGT00940000156315 #22	ENSGT00940000162567 #23	ENSGT00900000143259	ENSGT00940000158170 #24	ENSGT00940000153556.A #25	ENSGT00390000003721.d.a #26	ENSGT00940000156836 #27	ENSGT00390000011364 #29	ENSGT00390000017131 #30	ENSGT00730000111323 #31	ENSGT01050000244824.F #32	ENSGT00390000016807 #33	ENSGT01050000244850.A.b #35	ENSGT00390000000903.b #36	ENSGT00940000159178 #37	ENSGT00390000004778
Glires	ANCESTRAL SPECIES	2				ENSGT00940000157312	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b #14	ENSGT00530000064244.a	ENSGT00940000161980 #15	ENSGT00390000014109 #16	ENSGT00950000183041.A.e #17	ENSGT00390000016313.a.b #18	ENSGT00390000018439 #19	ENSGT00730000111536	ENSGT00940000155864.a.b #20	ENSGT00390000009630 #21	ENSGT00940000156315 #22	ENSGT00940000162567 #23	ENSGT00900000143259	ENSGT00940000158170 #24	ENSGT00940000153556.A #25	ENSGT00390000003721.d.a #26	ENSGT00940000156836 #27	ENSGT00390000011364 #29	ENSGT00390000017131 #30	ENSGT00730000111323 #31	ENSGT01050000244824.F #32	ENSGT00390000016807 #33	ENSGT01050000244850.A.b #35	ENSGT00390000000903.b #36	ENSGT00940000159178 #37	ENSGT00390000004778
Rodentia	ANCESTRAL SPECIES	2				ENSGT00940000157312	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b #14	ENSGT00530000064244.a	ENSGT00940000161980 #15	ENSGT00390000014109 #16	ENSGT00950000183041.A.e #17	ENSGT00390000016313.a.b #18	ENSGT00390000018439 #19	ENSGT00730000111536	ENSGT00940000155864.a.b #20	ENSGT00390000009630 #21	ENSGT00940000156315 #22	ENSGT00940000162567 #23	ENSGT00900000143259	ENSGT00940000158170 #24	ENSGT00940000153556.A #25	ENSGT00390000003721.d.a #26	ENSGT00940000156836 #27	ENSGT00390000011364 #29	ENSGT00390000017131 #30	ENSGT00730000111323 #31	ENSGT01050000244824.F #32	ENSGT00390000016807 #33	ENSGT01050000244850.A.b #35	ENSGT00390000000903.b #36	ENSGT00940000159178 #37	ENSGT00390000004778
Rodentia_B	ANCESTRAL SPECIES	26				ENSGT00940000157312	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b #14	ENSGT00530000064244.a	ENSGT00940000161980 #15	ENSGT00390000014109 #16	ENSGT00950000183041.A.e #17	ENSGT00390000016313.a.b #18	ENSGT00390000018439 #19	ENSGT00730000111536	ENSGT00940000155864.a.b.s #20	ENSGT00390000009630 #21	ENSGT00940000156315 #22	ENSGT00940000162567 #23	ENSGT00900000143259	ENSGT00940000158170 #24	ENSGT00940000153556.A #25	ENSGT00390000003721.d.a #26	ENSGT00940000156836 #27	ENSGT00390000011364 #29	ENSGT00390000017131 #30	ENSGT00730000111323 #31	ENSGT01050000244824.F #32	ENSGT00390000016807 #33	ENSGT01050000244850.A.b #35	ENSGT00390000000903.b #36	ENSGT00940000159178 #37	ENSGT00390000004778
Myomorpha	ANCESTRAL SPECIES	36					ENSGT00390000008330	ENSGT00950000183014.f.b.a.b #14	ENSGT00530000064244.a	ENSGT00940000161980 #15	ENSGT00390000014109 #16	ENSGT00950000183041.A.e #17	ENSGT00390000016313.a.b #18	ENSGT00390000018439 #19	ENSGT00730000111536	ENSGT00940000155864.a.b.s #20	ENSGT00390000009630 #21	ENSGT00940000156315 #22	ENSGT00940000162567 #23	ENSGT00900000143259	ENSGT00940000158170 #24	ENSGT00940000153556.A #25	ENSGT00390000003721.d.a #26	ENSGT00940000156836 #27	ENSGT00390000011364 #29	ENSGT00390000017131 #30	ENSGT00730000111323 #31	ENSGT01050000244824.F #32	ENSGT00390000016807 #33	ENSGT01050000244850.A.b #35	ENSGT00390000000903.b #36	ENSGT00940000159178 #37	ENSGT00940000161154
Lesser Egyptian jerboa	MODERN SPECIES	116	Klhl3 (ENSJJAG00000021717) #7	Hnrnpa0 (ENSJJAG00000006954) #8	Npy6r (ENSJJAG00000000646) #9	Myot (ENSJJAG00000021663) #10	Dcp2 (ENSJJAG00000010518) #11	Mcc (ENSJJAG00000014471) #12	Ythdc2 (ENSJJAG00000017908) #13	ENSJJAG00000003627 #14	Rab43 (ENSJJAG00000006469) #15	Isy1 (ENSJJAG00000009635) #16	ENSJJAG00000010709 #17	Copg1 (ENSJJAG00000021522) #18	Hmces (ENSJJAG00000013891) #19	Rab7 (ENSJJAG00000014204) #20	Rpn1 (ENSJJAG00000016770) #21	Gata2 (ENSJJAG00000017283) #22	Dnajb8 (ENSJJAG00000014628) #23	ENSJJAG00000020703 #24	Ruvbl1 (ENSJJAG00000022489) #25	Sec61a1 (ENSJJAG00000000357) #26	Kbtbd12 (ENSJJAG00000003832) #27	ENSJJAG00000014292 #28	Mgll (ENSJJAG00000017428) #29	Abtb1 (ENSJJAG00000003349) #30	Podxl2 (ENSJJAG00000013158) #31	Mcm2 (ENSJJAG00000015084) #32	Tpra1 (ENSJJAG00000021306) #33	ENSJJAG00000009122 #34	Plxna1 (ENSJJAG00000016193) #35	Chchd6 (ENSJJAG00000005785) #36	Txnrd3 (ENSJJAG00000019781) #37
Muroidea	ANCESTRAL SPECIES	37					ENSGT00390000008330	ENSGT00950000183014.f.b.a.b #14	ENSGT00530000064244.a	ENSGT00940000161980 #15	ENSGT00390000014109 #16	ENSGT00950000183041.A.e #17	ENSGT00390000016313.a.b #18	ENSGT00390000018439 #19	ENSGT00730000111536	ENSGT00940000155864.a.b.s #20	ENSGT00390000009630 #21	ENSGT00940000156315 #22	ENSGT00940000162567 #23	ENSGT00900000143259	ENSGT00940000158170 #24	ENSGT00940000153556.A #25	ENSGT00390000003721.d.a #26	ENSGT00940000156836 #27	ENSGT00390000011364 #29	ENSGT00390000017131 #30	ENSGT00730000111323 #31	ENSGT01050000244824.F #32	ENSGT00390000016807 #33	ENSGT01050000244850.A.b #35	ENSGT00390000000903.b #36	ENSGT00940000159178 #37	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.b
Muroidea_A	ANCESTRAL SPECIES	4	ENSGT00940000156279	ENSGT00950000183015.A	ENSGT00940000164891	ENSGT00390000010591	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b #14	ENSGT00530000064244.a	ENSGT00940000161980 #15	ENSGT00390000014109 #16	ENSGT00950000183041.A.e #17	ENSGT00390000016313.a.b #18	ENSGT00390000018439 #19	ENSGT00730000111536	ENSGT00940000155864.a.b.s #20	ENSGT00390000009630 #21	ENSGT00940000156315 #22	ENSGT00940000162567 #23	ENSGT00900000143259	ENSGT00940000158170 #24	ENSGT00940000153556.A #25	ENSGT00390000003721.d.a #26	ENSGT00940000156836 #27	ENSGT00390000011364 #29	ENSGT00390000017131 #30	ENSGT00730000111323 #31	ENSGT01050000244824.F #32	ENSGT00390000016807 #33	ENSGT01050000244850.A.b #35	ENSGT00390000000903.b #36	ENSGT00940000159178 #37	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.b
Cricetidae	ANCESTRAL SPECIES	3	ENSGT00940000156279	ENSGT00950000183015.A	ENSGT00940000164891	ENSGT00390000010591	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b #14	ENSGT00530000064244.a	ENSGT00940000161980 #15	ENSGT00390000014109 #16	ENSGT00950000183041.A.e #17	ENSGT00390000016313.a.b #18	ENSGT00390000018439 #19	ENSGT00730000111536	ENSGT00940000155864.a.b.s #20	ENSGT00390000009630 #21	ENSGT00940000156315 #22	ENSGT00940000162567 #23	ENSGT00900000143259	ENSGT00940000158170 #24	ENSGT00940000153556.A #25	ENSGT00390000003721.d.a #26	ENSGT00940000156836 #27	ENSGT00390000011364 #29	ENSGT00390000017131 #30	ENSGT00730000111323 #31	ENSGT01050000244824.F #32	ENSGT00390000016807 #33	ENSGT01050000244850.A.b #35	ENSGT00390000000903.b #36	ENSGT00940000159178 #37	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.b
Cricetidae_B	ANCESTRAL SPECIES	14	ENSGT00940000156279	ENSGT00950000183015.A	ENSGT00940000164891	ENSGT00390000010591	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b #14	ENSGT00530000064244.a	ENSGT00940000161980 #15	ENSGT00390000014109 #16	ENSGT00950000183041.A.e #17	ENSGT00390000016313.a.b #18	ENSGT00390000018439 #19	ENSGT00730000111536	ENSGT00940000155864.a.b.s #20	ENSGT00390000009630 #21	ENSGT00940000156315 #22	ENSGT00940000162567 #23	ENSGT00900000143259	ENSGT00940000158170 #24	ENSGT00940000153556.A #25	ENSGT00390000003721.d.a #26	ENSGT00940000156836 #27	ENSGT00390000011364 #29	ENSGT00390000017131 #30	ENSGT00730000111323 #31	ENSGT01050000244824.F #32	ENSGT00390000016807 #33	ENSGT01050000244850.A.b #35	ENSGT00390000000903.b #36	ENSGT00940000159178 #37	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.b
Prairie vole	MODERN SPECIES	84	Gkn2 (ENSMOCG00000013727)	Gkn3 (ENSMOCG00000001044)	Bmp10 (ENSMOCG00000008010)	Arhgap25 (ENSMOCG00000014806)	Prokr1 (ENSMOCG00000016639)	Aplf (ENSMOCG00000000228)	Efcc1 (ENSMOCG00000015748) #14	Gp9 (ENSMOCG00000005065)	Rab43 (ENSMOCG00000013901) #15	Isy1 (ENSMOCG00000000472) #16	Cnbp (ENSMOCG00000002044) #17	Copg1 (ENSMOCG00000004622) #18	Hmces (ENSMOCG00000016378) #19	ENSMOCG00000002760 #20	Rpn1 (ENSMOCG00000019555) #21	Gata2 (ENSMOCG00000010158) #22	Dnajb8 (ENSMOCG00000009527) #23	ENSMOCG00000013516	Eefsec (ENSMOCG00000017748) #24	Ruvbl1 (ENSMOCG00000020711) #25	Sec61a1 (ENSMOCG00000012823) #26	Kbtbd12 (ENSMOCG00000010634) #27	Mgll (ENSMOCG00000000279) #29	Abtb1 (ENSMOCG00000001980) #30	Podxl2 (ENSMOCG00000012699) #31	Mcm2 (ENSMOCG00000002693) #32	Tpra1 (ENSMOCG00000015000) #33	Plxna1 (ENSMOCG00000007977) #35	Chchd6 (ENSMOCG00000014679) #36	ENSMOCG00000002972	Txnrd3 (ENSMOCG00000012893) #37
Northern American deer mouse	MODERN SPECIES	16	Arhgap25 (ENSPEMG00000008247)	Prokr1 (ENSPEMG00000016141)	Aplf (ENSPEMG00000031100)	Cfap92 (ENSPEMG00000030599)	Efcc1 (ENSPEMG00000007315) #14	ENSPEMG00000028759	Gp9 (ENSPEMG00000014722)	Rab43 (ENSPEMG00000001914) #15	Isy1 (ENSPEMG00000005390) #16	Cnbp (ENSPEMG00000024256) #17	Copg1 (ENSPEMG00000012916) #18	Hmces (ENSPEMG00000010791) #19	H1f10 (ENSPEMG00000024744)	Rab7 (ENSPEMG00000010928) #20	Rpn1 (ENSPEMG00000009660) #21	Gata2 (ENSPEMG00000014601) #22	Dnajb8 (ENSPEMG00000009473) #23	Eefsec (ENSPEMG00000013677) #24	Ruvbl1 (ENSPEMG00000012619) #25	Sec61a1 (ENSPEMG00000010859) #26	Kbtbd12 (ENSPEMG00000018592) #27	Mgll (ENSPEMG00000009625) #29	Dusp11 (ENSPEMG00000008802)	ENSPEMG00000027855	Tprkb (ENSPEMG00000002687)	ENSPEMG00000029148	ENSPEMG00000009923	ENSPEMG00000031248	ENSPEMG00000000789	ENSPEMG00000028305	ENSPEMG00000000337
Cricetinae	ANCESTRAL SPECIES	8	ENSGT00930000150969.A.c.b.b	ENSGT00940000156279	ENSGT00950000183015.A	ENSGT00940000164891	ENSGT00390000010591	ENSGT00950000183014.f.b.a.b #14	ENSGT00530000064244.a	ENSGT00940000161980 #15	ENSGT00390000014109 #16	ENSGT00950000183041.A.e #17	ENSGT00390000016313.a.b #18	ENSGT00390000018439 #19	ENSGT00730000111536	ENSGT00940000155864.a.b.s #20	ENSGT00390000009630 #21	ENSGT00940000156315 #22	ENSGT00940000162567 #23	ENSGT00900000143259	ENSGT00940000158170 #24	ENSGT00940000153556.A #25	ENSGT00390000003721.d.a #26	ENSGT00940000156836 #27	ENSGT00390000011364 #29	ENSGT00390000017131 #30	ENSGT00730000111323 #31	ENSGT01050000244824.F #32	ENSGT00390000016807 #33	ENSGT01050000244850.A.b #35	ENSGT00390000000903.b #36	ENSGT00940000159178 #37	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.b
Chinese hamster chok1gshd	MODERN SPECIES	335	Gkn3 (ENSCGRG00001015053)	Bmp10 (ENSCGRG00001014783)	Arhgap25 (ENSCGRG00001014196)	Prokr1 (ENSCGRG00001013215)	Aplf (ENSCGRG00001011911)	Efcc1 (ENSCGRG00001009634) #14	Gp9 (ENSCGRG00001015172)	Rab43 (ENSCGRG00001009520) #15	Isy1 (ENSCGRG00001003415) #16	ENSCGRG00001000923 #17	Copg1 (ENSCGRG00001023044) #18	Hmces (ENSCGRG00001021867) #19	H1f10 (ENSCGRG00001016043)	Rab7 (ENSCGRG00001021807) #20	Rpn1 (ENSCGRG00001020104) #21	Gata2 (ENSCGRG00001019672) #22	Dnajb8 (ENSCGRG00001014725) #23	ENSCGRG00001019550	Eefsec (ENSCGRG00001018089) #24	Ruvbl1 (ENSCGRG00001017058) #25	Sec61a1 (ENSCGRG00001016511) #26	Kbtbd12 (ENSCGRG00001015928) #27	Mgll (ENSCGRG00001012642) #29	Abtb1 (ENSCGRG00001011986) #30	Podxl2 (ENSCGRG00001010445) #31	Mcm2 (ENSCGRG00001010056) #32	Tpra1 (ENSCGRG00001001126) #33	ENSCGRG00001019857
Golden Hamster	MODERN SPECIES	643	Gkn1 (ENSMAUG00000001209)	Gkn2 (ENSMAUG00000015716)	Gkn3 (ENSMAUG00000006560)	Bmp10 (ENSMAUG00000020599)	Arhgap25 (ENSMAUG00000004408)	Prokr1 (ENSMAUG00000001970)	ENSMAUG00000021133	Efcc1 (ENSMAUG00000020888) #14	Gp9 (ENSMAUG00000009649)	Rab43 (ENSMAUG00000020185) #15	Isy1 (ENSMAUG00000008793) #16	ENSMAUG00000011845 #17	Hmces (ENSMAUG00000007703) #19	H1f10 (ENSMAUG00000010028)	Rpn1 (ENSMAUG00000022244) #21	Gata2 (ENSMAUG00000007355) #22	Dnajb8 (ENSMAUG00000009689) #23	ENSMAUG00000021823	Eefsec (ENSMAUG00000011197) #24	Ruvbl1 (ENSMAUG00000001153) #25	Sec61a1 (ENSMAUG00000003472) #26	Kbtbd12 (ENSMAUG00000017044) #27	Mgll (ENSMAUG00000006292) #29	Abtb1 (ENSMAUG00000008631) #30	Podxl2 (ENSMAUG00000014710) #31	Mcm2 (ENSMAUG00000008722) #32	Tpra1 (ENSMAUG00000012903) #33	ENSMAUG00000017592	Plxna1 (ENSMAUG00000014014) #35	ENSMAUG00000010425	Txnrd3 (ENSMAUG00000012587) #37
Murinae	ANCESTRAL SPECIES	4	ENSGT00940000156279	ENSGT00950000183015.A	ENSGT00940000164891	ENSGT00390000010591	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b #14	ENSGT00530000064244.a	ENSGT00940000161980 #15	ENSGT00390000014109 #16	ENSGT00950000183041.A.e #17	ENSGT00390000016313.a.b #18	ENSGT00390000018439 #19	ENSGT00730000111536	ENSGT00940000155864.a.b.s #20	ENSGT00390000009630 #21	ENSGT00940000156315 #22	ENSGT00900000143259	ENSGT00940000162567 #23	ENSGT00940000158170 #24	ENSGT00940000153556.A #25	ENSGT00390000003721.d.a #26	ENSGT00940000156836 #27	ENSGT00390000011364 #29	ENSGT00390000017131 #30	ENSGT00730000111323 #31	ENSGT01050000244824.F #32	ENSGT00390000016807 #33	ENSGT01050000244850.A.b #35	ENSGT00390000000903.b #36	ENSGT00940000159178 #37	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.b.b.b
Mus	ANCESTRAL SPECIES	12	ENSGT00950000183015.A	ENSGT00940000164891	ENSGT00390000010591	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b #14	ENSGT00530000064244.a	ENSGT00860000135618	ENSGT00940000161980 #15	ENSGT00390000014109 #16	ENSGT00950000183041.A.e #17	ENSGT00390000016313.a.b #18	ENSGT00390000018439 #19	ENSGT00730000111536	ENSGT00940000155864.a.b.s #20	ENSGT00390000009630 #21	ENSGT00940000156315 #22	ENSGT00900000143259	ENSGT00940000162567 #23	ENSGT00940000158170 #24	ENSGT00940000153556.A #25	ENSGT00390000003721.d.a #26	ENSGT00940000156836 #27	ENSGT00390000011364 #29	ENSGT00390000017131 #30	ENSGT00730000111323 #31	ENSGT01050000244824.F #32	ENSGT00390000016807 #33	ENSGT00860000136124	ENSGT01050000244850.A.b #35	ENSGT00390000000903.b #36	ENSGT00940000159178 #37
Mus_A	ANCESTRAL SPECIES	7	ENSGT00950000183015.A	ENSGT00940000164891	ENSGT00390000010591	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b #14	ENSGT00530000064244.a	ENSGT00860000135618	ENSGT00940000161980 #15	ENSGT00390000014109 #16	ENSGT00950000183041.A.e #17	ENSGT00390000016313.a.b #18	ENSGT00390000018439 #19	ENSGT00730000111536	ENSGT00940000155864.a.b.s #20	ENSGT00390000009630 #21	ENSGT00940000156315 #22	ENSGT00900000143259	ENSGT00940000162567 #23	ENSGT00940000158170 #24	ENSGT00940000153556.A.g.a #25	ENSGT00390000003721.d.a #26	ENSGT00940000156836 #27	ENSGT00390000011364 #29	ENSGT00390000017131 #30	ENSGT00730000111323 #31	ENSGT01050000244824.F #32	ENSGT00390000016807 #33	ENSGT00860000136124	ENSGT01050000244850.A.b #35	ENSGT00390000000903.b #36	ENSGT00940000159178 #37
Mus_B	ANCESTRAL SPECIES	15	ENSGT00950000183015.A	ENSGT00940000164891	ENSGT00390000010591	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b #14	ENSGT00530000064244.a	ENSGT00860000135618	ENSGT00940000161980 #15	ENSGT00390000014109 #16	ENSGT00950000183041.A.e #17	ENSGT00390000016313.a.b #18	ENSGT00390000018439 #19	ENSGT00730000111536	ENSGT00940000155864.a.b.s #20	ENSGT00390000009630 #21	ENSGT00940000156315 #22	ENSGT00900000143259	ENSGT00940000162567 #23	ENSGT00940000158170 #24	ENSGT00940000153556.A.g.a #25	ENSGT00390000003721.d.a #26	ENSGT00940000156836 #27	ENSGT00390000011364 #29	ENSGT00390000017131 #30	ENSGT00730000111323 #31	ENSGT01050000244824.F #32	ENSGT00390000016807 #33	ENSGT00860000136124	ENSGT01050000244850.A.b #35	ENSGT00390000000903.b #36	ENSGT00940000159178 #37
Mus_C	ANCESTRAL SPECIES	18	ENSGT00950000183015.A	ENSGT00940000164891	ENSGT00390000010591	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b #14	ENSGT00530000064244.a	ENSGT00860000135618	ENSGT00940000161980 #15	ENSGT00390000014109 #16	ENSGT00950000183041.A.e #17	ENSGT00390000016313.a.b #18	ENSGT00390000018439 #19	ENSGT00730000111536	ENSGT00940000155864.a.b.s #20	ENSGT00390000009630 #21	ENSGT00940000156315 #22	ENSGT00900000143259	ENSGT00940000162567 #23	ENSGT00940000158170 #24	ENSGT00940000153556.A.g.a #25	ENSGT00390000003721.d.a #26	ENSGT00940000156836 #27	ENSGT00390000011364 #29	ENSGT00390000017131 #30	ENSGT00730000111323 #31	ENSGT01050000244824.F #32	ENSGT00390000016807 #33	ENSGT00860000136124	ENSGT01050000244850.A.b #35	ENSGT00390000000903.b #36	ENSGT00940000159178 #37
spretus	MODERN SPECIES	15	Bmp10 (MGP_SPRETEiJ_G0029623)	Arhgap25 (MGP_SPRETEiJ_G0029624)	Prokr1 (MGP_SPRETEiJ_G0029625)	Aplf (MGP_SPRETEiJ_G0029626)	Efcc1 (MGP_SPRETEiJ_G0029627) #14	Gp9 (MGP_SPRETEiJ_G0029628)	Rab43 (MGP_SPRETEiJ_G0029629) #15	MGP_SPRETEiJ_G0029630	Isy1 (MGP_SPRETEiJ_G0029631) #16	Cnbp (MGP_SPRETEiJ_G0029632) #17	Copg1 (MGP_SPRETEiJ_G0029633) #18	Hmces (MGP_SPRETEiJ_G0029634) #19	MGP_SPRETEiJ_G0029635	Rab7 (MGP_SPRETEiJ_G0029636) #20	Rpn1 (MGP_SPRETEiJ_G0029637) #21	Gata2 (MGP_SPRETEiJ_G0029638) #22	Dnajb8 (MGP_SPRETEiJ_G0029639) #23	Eefsec (MGP_SPRETEiJ_G0029640) #24	Ruvbl1 (MGP_SPRETEiJ_G0029641) #25	Sec61a1 (MGP_SPRETEiJ_G0029642) #26	Kbtbd12 (MGP_SPRETEiJ_G0029643) #27	Mgll (MGP_SPRETEiJ_G0029644) #29	Abtb1 (MGP_SPRETEiJ_G0029645) #30	Podxl2 (MGP_SPRETEiJ_G0029646) #31	Mcm2 (MGP_SPRETEiJ_G0029647) #32	Tpra1 (MGP_SPRETEiJ_G0029648) #33	MGP_SPRETEiJ_G0029649	Plxna1 (MGP_SPRETEiJ_G0029650) #35	MGP_SPRETEiJ_G0029651 #36	Txnrd3 (MGP_SPRETEiJ_G0029652) #37	MGP_SPRETEiJ_G0029653
Steppe mouse	MODERN SPECIES	3245	Bmp10 (ENSMSIG00000014277)	Arhgap25 (ENSMSIG00000014180)	Prokr1 (ENSMSIG00000014170)	Aplf (ENSMSIG00000014118)	ENSMSIG00000014100	Cfap92 (ENSMSIG00000014040)	Efcc1 (ENSMSIG00000013979) #14	Gp9 (ENSMSIG00000013971)	Rab43 (ENSMSIG00000013941) #15	Isy1 (ENSMSIG00000013902) #16	Cnbp (ENSMSIG00000013887) #17	Copg1 (ENSMSIG00000013836) #18	Hmces (ENSMSIG00000013812) #19	Rab7 (ENSMSIG00000013617) #20	Rpn1 (ENSMSIG00000013555) #21	Gata2 (ENSMSIG00000013519) #22	ENSMSIG00000013506	Dnajb8 (ENSMSIG00000013500) #23	Eefsec (ENSMSIG00000013446) #24	Ruvbl1 (ENSMSIG00000013395) #25	Sec61a1 (ENSMSIG00000013368) #26	Kbtbd12 (ENSMSIG00000013327) #27	Mgll (ENSMSIG00000013258) #29	Abtb1 (ENSMSIG00000013235) #30	ENSMSIG00000013222	Podxl2 (ENSMSIG00000013198) #31	Mcm2 (ENSMSIG00000013116) #32	Tpra1 (ENSMSIG00000013070) #33	ENSMSIG00000013052	ENSMSIG00000013044
Mouse	MODERN SPECIES	15	Arhgap25 (ENSMUSG00000030047)	Prokr1 (ENSMUSG00000049409)	Aplf (ENSMUSG00000030051)	Cfap92 (ENSMUSG00000089997)	Efcc1 (ENSMUSG00000068263) #14	Gp9 (ENSMUSG00000030054)	Rab43 (ENSMUSG00000030055) #15	Gm45140 (ENSMUSG00000107928)	Isy1 (ENSMUSG00000030056) #16	Cnbp (ENSMUSG00000030057) #17	Copg1 (ENSMUSG00000030058) #18	Hmces (ENSMUSG00000030060) #19	H1f10 (ENSMUSG00000044927)	Rab7 (ENSMUSG00000079477) #20	Rpn1 (ENSMUSG00000030062) #21	Gata2 (ENSMUSG00000015053) #22	Dnajb8 (ENSMUSG00000048206) #23	Eefsec (ENSMUSG00000033216) #24	Ruvbl1 (ENSMUSG00000030079) #25	Sec61a1 (ENSMUSG00000030082) #26	Kbtbd12 (ENSMUSG00000033182) #27	Mgll (ENSMUSG00000033174) #29	Abtb1 (ENSMUSG00000030083) #30	Podxl2 (ENSMUSG00000033152) #31	Mcm2 (ENSMUSG00000002870) #32	Tpra1 (ENSMUSG00000002871) #33	Plxna1 (ENSMUSG00000030084) #35	Chchd6 (ENSMUSG00000030086) #36	Txnrd3 (ENSMUSG00000000811) #37	Vmn1r40 (ENSMUSG00000096051)	Vmn1r41 (ENSMUSG00000094586)
Ryukyu mouse	MODERN SPECIES	15	Gkn1 (MGP_CAROLIEiJ_G0028609)	Gkn2 (MGP_CAROLIEiJ_G0028610)	Gkn3 (MGP_CAROLIEiJ_G0028611)	Bmp10 (MGP_CAROLIEiJ_G0028612)	MGP_CAROLIEiJ_G0028613	Prokr1 (MGP_CAROLIEiJ_G0028614)	MGP_CAROLIEiJ_G0028615	Rab43 (MGP_CAROLIEiJ_G0028617) #15	MGP_CAROLIEiJ_G0028618	Isy1 (MGP_CAROLIEiJ_G0028619) #16	Cnbp (MGP_CAROLIEiJ_G0028620) #17	Copg1 (MGP_CAROLIEiJ_G0028621) #18	Hmces (MGP_CAROLIEiJ_G0028622) #19	MGP_CAROLIEiJ_G0028623	MGP_CAROLIEiJ_G0028624	Gata2 (MGP_CAROLIEiJ_G0028625) #22	Dnajb8 (MGP_CAROLIEiJ_G0028626) #23	Eefsec (MGP_CAROLIEiJ_G0028627) #24	MGP_CAROLIEiJ_G0028628 #25	Sec61a1 (MGP_CAROLIEiJ_G0028629) #26	Kbtbd12 (MGP_CAROLIEiJ_G0028630) #27	MGP_CAROLIEiJ_G0028631 #29	Abtb1 (MGP_CAROLIEiJ_G0028632) #30	Podxl2 (MGP_CAROLIEiJ_G0028633) #31	MGP_CAROLIEiJ_G0028634 #33	Plxna1 (MGP_CAROLIEiJ_G0028636) #35	Chchd6 (MGP_CAROLIEiJ_G0028637) #36	Txnrd3 (MGP_CAROLIEiJ_G0028638) #37	MGP_CAROLIEiJ_G0028639	MGP_CAROLIEiJ_G0028640	BC048671 (MGP_CAROLIEiJ_G0028641)
Shrew mouse	MODERN SPECIES	11	Bmp10 (MGP_PahariEiJ_G0022349)	Arhgap25 (MGP_PahariEiJ_G0022350)	Prokr1 (MGP_PahariEiJ_G0022351)	Aplf (MGP_PahariEiJ_G0022352)	Efcc1 (MGP_PahariEiJ_G0022353) #14	Gp9 (MGP_PahariEiJ_G0022354)	Rab43 (MGP_PahariEiJ_G0022355) #15	MGP_PahariEiJ_G0022356	Isy1 (MGP_PahariEiJ_G0022357) #16	Cnbp (MGP_PahariEiJ_G0022358) #17	Copg1 (MGP_PahariEiJ_G0022359) #18	Hmces (MGP_PahariEiJ_G0022360) #19	MGP_PahariEiJ_G0022361	Rab7 (MGP_PahariEiJ_G0022362) #20	Rpn1 (MGP_PahariEiJ_G0022363) #21	Gata2 (MGP_PahariEiJ_G0022364) #22	Dnajb8 (MGP_PahariEiJ_G0022365) #23	Eefsec (MGP_PahariEiJ_G0022366) #24	Ruvbl1 (MGP_PahariEiJ_G0022367) #25	Sec61a1 (MGP_PahariEiJ_G0022368) #26	Kbtbd12 (MGP_PahariEiJ_G0022369) #27	Mgll (MGP_PahariEiJ_G0022370) #29	Abtb1 (MGP_PahariEiJ_G0022371) #30	Podxl2 (MGP_PahariEiJ_G0022372) #31	Mcm2 (MGP_PahariEiJ_G0022373) #32	Tpra1 (MGP_PahariEiJ_G0022374) #33	MGP_PahariEiJ_G0022375	Plxna1 (MGP_PahariEiJ_G0022376) #35	Chchd6 (MGP_PahariEiJ_G0022377) #36	Txnrd3 (MGP_PahariEiJ_G0022378) #37	Vmn1r40 (MGP_PahariEiJ_G0022379)
Rat	MODERN SPECIES	14	Bmp10 (ENSRNOG00000009316)	Arhgap25 (ENSRNOG00000009347)	Prokr1 (ENSRNOG00000009556)	Aplf (ENSRNOG00000043059)	Cfap92 (ENSRNOG00000031408)	Efcc1 (ENSRNOG00000009787) #14	Gp9 (ENSRNOG00000010015)	Rab43 (ENSRNOG00000037768) #15	Isy1 (ENSRNOG00000010021) #16	Cnbp (ENSRNOG00000010239) #17	Hmces (ENSRNOG00000010474) #18	H1f10 (ENSRNOG00000027722)	Rab7a (ENSRNOG00000012247) #20	Rpn1 (ENSRNOG00000046345) #21	ENSRNOG00000070501	Gata2 (ENSRNOG00000012347) #22	Dnajb8 (ENSRNOG00000034088) #23	Eefsec (ENSRNOG00000012954) #24	Ruvbl1 (ENSRNOG00000013195) #25	LOC685085 (ENSRNOG00000062325)	Sec61a1 (ENSRNOG00000013743) #26	Kbtbd12 (ENSRNOG00000061868) #27	Mgll (ENSRNOG00000014508) #29	Abtb1 (ENSRNOG00000015762) #30	Podxl2 (ENSRNOG00000016255) #31	Mcm2 (ENSRNOG00000016316) #32	Tpra1 (ENSRNOG00000016665) #33	Prr20e (ENSRNOG00000026675)	AABR07061385.2 (ENSRNOG00000060843)	Plxna1 (ENSRNOG00000017003) #35	Chchd6 (ENSRNOG00000060248) #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	613							Efcc1 (ENSNGAG00000016217) #14	Gp9 (ENSNGAG00000023950)	Rab43 (ENSNGAG00000008666) #15	Isy1 (ENSNGAG00000015207) #16	Cnbp (ENSNGAG00000005084) #17	Copg1 (ENSNGAG00000021624) #18	Hmces (ENSNGAG00000023995) #19	Rab7 (ENSNGAG00000005194) #20	ENSNGAG00000024318 #21	Gata2 (ENSNGAG00000001268) #22	Dnajb8 (ENSNGAG00000010629) #23	ENSNGAG00000023278 #24	Ruvbl1 (ENSNGAG00000001573) #25	Sec61a1 (ENSNGAG00000021635) #26	ENSNGAG00000023399 #27	Mgll (ENSNGAG00000013544) #29	Abtb1 (ENSNGAG00000002907) #30	Podxl2 (ENSNGAG00000005340) #31	Mcm2 (ENSNGAG00000023436) #32	Tpra1 (ENSNGAG00000016850) #33	Plxna1 (ENSNGAG00000007243) #35	Chchd6 (ENSNGAG00000023667) #36	Txnrd3 (ENSNGAG00000016608) #37	Chst13 (ENSNGAG00000023581)	Uroc1 (ENSNGAG00000020922)
Kangaroo rat	MODERN SPECIES	472						Acad9 (ENSDORG00000002410)	Gp9 (ENSDORG00000027521)	Rab43 (ENSDORG00000002534) #15	Isy1 (ENSDORG00000006886) #16	ENSDORG00000027354	Cnbp (ENSDORG00000002919) #17	Copg1 (ENSDORG00000012844) #18	Hmces (ENSDORG00000026017) #19	Rab7 (ENSDORG00000027671) #20	Rpn1 (ENSDORG00000011930) #21	Gata2 (ENSDORG00000027471) #22	Dnajb8 (ENSDORG00000024345) #23	Eefsec (ENSDORG00000000264) #24	Ruvbl1 (ENSDORG00000014592) #25	Sec61a1 (ENSDORG00000000901) #26	Kbtbd12 (ENSDORG00000013538) #27	Mgll (ENSDORG00000027520) #29	Abtb1 (ENSDORG00000024349) #30	Podxl2 (ENSDORG00000024076) #31	Mcm2 (ENSDORG00000005648) #32	Tpra1 (ENSDORG00000026236) #33	Plxna1 (ENSDORG00000004516) #35	Chchd6 (ENSDORG00000007486) #36	Txnrd3 (ENSDORG00000000091) #37	Uroc1 (ENSDORG00000005334)	Zxdc (ENSDORG00000005724)
Rodentia_A	ANCESTRAL SPECIES	34				ENSGT00940000157312	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b #14	ENSGT00530000064244.a	ENSGT00940000161980 #15	ENSGT00390000014109 #16	ENSGT00950000183041.A.e #17	ENSGT00390000016313.a.b #18	ENSGT00390000018439 #19	ENSGT00730000111536	ENSGT00940000155864.a.b #20	ENSGT00390000009630 #21	ENSGT00940000156315 #22	ENSGT00940000162567 #23	ENSGT00900000143259	ENSGT00940000158170 #24	ENSGT00940000153556.A #25	ENSGT00390000003721.d.a #26	ENSGT00940000156836 #27	ENSGT00390000011364 #29	ENSGT00390000017131 #30	ENSGT00730000111323 #31	ENSGT01050000244824.F #32	ENSGT00390000016807 #33	ENSGT01050000244850.A.b #35	ENSGT00390000000903.b #36	ENSGT00940000159178 #37
Sciuridae	ANCESTRAL SPECIES	58				ENSGT00940000157312	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b #14	ENSGT00530000064244.a	ENSGT00940000161980 #15	ENSGT00390000014109 #16	ENSGT00950000183041.A.e #17	ENSGT00390000016313.a.b #18	ENSGT00390000018439 #19	ENSGT00730000111536	ENSGT00940000155864.a.b #20	ENSGT00390000009630 #21	ENSGT00940000156315 #22	ENSGT00940000162567 #23	ENSGT00900000143259	ENSGT00940000158170 #24	ENSGT00940000153556.A #25	ENSGT00390000003721.d.a #26	ENSGT00940000156836 #27	ENSGT00390000011364 #29	ENSGT00390000017131 #30	ENSGT00730000111323 #31	ENSGT01050000244824.F #32	ENSGT00390000016807 #33	ENSGT01050000244850.A.b #35	ENSGT00390000000903.b #36	ENSGT00940000159178 #37
Marmotini	DUPLICATION
Marmotini	ANCESTRAL SPECIES	93					ENSGT00940000157312.i	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b #14	ENSGT00530000064244.a	ENSGT00940000161980 #15	ENSGT00390000014109 #16	ENSGT00950000183041.A.e #17	ENSGT00390000016313.a.b #18	ENSGT00390000018439 #19	ENSGT00940000155864.a.b #20	ENSGT00390000009630 #21	ENSGT00940000156315.k #22	ENSGT00940000156315.l #22	ENSGT00940000162567 #23	ENSGT00900000143259	ENSGT00940000158170 #24	ENSGT00940000153556.A #25	ENSGT00390000003721.d.a.a #26	ENSGT00940000156836 #27	ENSGT00390000011364 #29	ENSGT00390000017131 #30	ENSGT00730000111323 #31	ENSGT01050000244824.F #32	ENSGT00390000016807 #33	ENSGT01050000244850.A.b #35	ENSGT00390000000903.b #36	ENSGT00940000159178 #37
Marmotini_b	ANCESTRAL SPECIES	169					ENSGT00940000157312.i	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b #14	ENSGT00530000064244.a	ENSGT00940000161980 #15	ENSGT00390000014109 #16	ENSGT00950000183041.A.e #17	ENSGT00390000016313.a.b #18	ENSGT00390000018439 #19	ENSGT00940000155864.a.b #20	ENSGT00390000009630 #21	ENSGT00940000156315.k #22	ENSGT00940000156315.l #22	ENSGT00940000162567 #23	ENSGT00900000143259	ENSGT00940000158170 #24	ENSGT00940000153556.A #25	ENSGT00390000003721.d.a.a #26	ENSGT00940000156836 #27	ENSGT00390000011364 #29	ENSGT00390000017131 #30	ENSGT00730000111323 #31	ENSGT01050000244824.F #32	ENSGT00390000016807 #33	ENSGT01050000244850.A.b #35	ENSGT00390000000903.b #36	ENSGT00940000159178 #37
Arctic ground squirrel	MODERN SPECIES	473					ACAD9 (ENSUPAG00010004336)	CFAP92 (ENSUPAG00010004363)	EFCC1 (ENSUPAG00010004401) #14	GP9 (ENSUPAG00010004409)	RAB43 (ENSUPAG00010004411) #15	ISY1 (ENSUPAG00010004419) #16	CNBP (ENSUPAG00010004475) #17	COPG1 (ENSUPAG00010004499) #18	H1-10 (ENSUPAG00010004837)	RAB7A (ENSUPAG00010004842) #20	RPN1 (ENSUPAG00010004856) #21	GATA2 (ENSUPAG00010004865) #22	DNAJB8 (ENSUPAG00010004873) #23	ENSUPAG00010004878	EEFSEC (ENSUPAG00010004881) #24	RUVBL1 (ENSUPAG00010004889) #25	ENSUPAG00010004903 #26	KBTBD12 (ENSUPAG00010004923) #27	MGLL (ENSUPAG00010004935) #29	ABTB1 (ENSUPAG00010004976) #30	PODXL2 (ENSUPAG00010004990) #31	MCM2 (ENSUPAG00010005000) #32	TPRA1 (ENSUPAG00010005011) #33	PLXNA1 (ENSUPAG00010005036) #35	CHCHD6 (ENSUPAG00010005057) #36	TXNRD3 (ENSUPAG00010005060) #37	ENSUPAG00010005097
Alpin marmot	MODERN SPECIES	128						ENSMMMG00000022140	ENSMMMG00000022115	CFAP92 (ENSMMMG00000022099)	GP9 (ENSMMMG00000022097)	RAB43 (ENSMMMG00000022095) #15	ENSMMMG00000022094	CNBP (ENSMMMG00000022080) #17	COPG1 (ENSMMMG00000021526) #18	RAB7A (ENSMMMG00000021506) #20	RPN1 (ENSMMMG00000021493) #21	ENSMMMG00000021491 #22	ENSMMMG00000021488	DNAJB8 (ENSMMMG00000021483) #23	EEFSEC (ENSMMMG00000021474) #24	RUVBL1 (ENSMMMG00000021467) #25	SEC61A1 (ENSMMMG00000021456) #26	ENSMMMG00000021450 #27	MGLL (ENSMMMG00000021444) #29	MCM2 (ENSMMMG00000021074) #32	PLXNA1 (ENSMMMG00000020799) #35	ENSMMMG00000020786 #36	TXNRD3 (ENSMMMG00000020753) #37
Marmotini	ANCESTRAL SPECIES	93				ENSGT00940000157312.i	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b #14	ENSGT00530000064244.a	ENSGT00940000161980 #15	ENSGT00390000014109 #16	ENSGT00950000183041.A.e #17	ENSGT00390000016313.a.b #18	ENSGT00390000018439 #19	ENSGT00940000155864.a.b #20	ENSGT00390000009630 #21	ENSGT00940000156315.k #22	ENSGT00940000156315.l #22	ENSGT00940000162567 #23	ENSGT00900000143259	ENSGT00940000158170 #24	ENSGT00940000153556.A #25	ENSGT00390000003721.d.a.a #26	ENSGT00940000156836 #27	ENSGT00390000011364 #29	ENSGT00390000017131 #30	ENSGT00730000111323 #31	ENSGT01050000244824.F #32	ENSGT00390000016807 #33	ENSGT01050000244850.A.b #35	ENSGT00390000000903.b #36	ENSGT00940000159178 #37
Marmotini_b	ANCESTRAL SPECIES	169				ENSGT00940000157312.i	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b #14	ENSGT00530000064244.a	ENSGT00940000161980 #15	ENSGT00390000014109 #16	ENSGT00950000183041.A.e #17	ENSGT00390000016313.a.b #18	ENSGT00390000018439 #19	ENSGT00940000155864.a.b #20	ENSGT00390000009630 #21	ENSGT00940000156315.k #22	ENSGT00940000156315.l #22	ENSGT00940000162567 #23	ENSGT00900000143259	ENSGT00940000158170 #24	ENSGT00940000153556.A #25	ENSGT00390000003721.d.a.a #26	ENSGT00940000156836 #27	ENSGT00390000011364 #29	ENSGT00390000017131 #30	ENSGT00730000111323 #31	ENSGT01050000244824.F #32	ENSGT00390000016807 #33	ENSGT01050000244850.A.b #35	ENSGT00390000000903.b #36	ENSGT00940000159178 #37
Squirrel	MODERN SPECIES	398							ACAD9 (ENSSTOG00000012078)	EFCC1 (ENSSTOG00000022244) #14	RAB43 (ENSSTOG00000024799) #15	ISY1 (ENSSTOG00000024769) #16	CNBP (ENSSTOG00000000173) #17	COPG1 (ENSSTOG00000003424) #18	HMCES (ENSSTOG00000030763) #19	RAB7A (ENSSTOG00000028487) #20	RPN1 (ENSSTOG00000004679) #21	GATA2 (ENSSTOG00000006138) #22	DNAJB8 (ENSSTOG00000026698) #23	EEFSEC (ENSSTOG00000019802) #24	RUVBL1 (ENSSTOG00000004659) #25	SEC61A1 (ENSSTOG00000002214) #26	ENSSTOG00000020065 #27	MGLL (ENSSTOG00000023185) #29	ABTB1 (ENSSTOG00000021906) #30	MCM2 (ENSSTOG00000021029) #32	PLXNA1 (ENSSTOG00000026715) #35	ENSSTOG00000033062	TXNRD3 (ENSSTOG00000014092) #37	ENSSTOG00000030399
Alpin marmot	MODERN SPECIES	624																ENSMMMG00000002306 #22
Eurasian red squirrel	MODERN SPECIES	10		ENSSVLG00005011437	ENSSVLG00005011591	ACAD9 (ENSSVLG00005011638)	CFAP92 (ENSSVLG00005011859)	EFCC1 (ENSSVLG00005012080) #14	GP9 (ENSSVLG00005012207)	RAB43 (ENSSVLG00005012224) #15	ISY1 (ENSSVLG00005012270) #16	ENSSVLG00005012311 #17	COPG1 (ENSSVLG00005012487) #18	HMCES (ENSSVLG00005012539) #19	H1-10 (ENSSVLG00005012682)	RAB7A (ENSSVLG00005012710) #20	RPN1 (ENSSVLG00005012900) #21	GATA2 (ENSSVLG00005013037) #22	DNAJB8 (ENSSVLG00005013080) #23	ENSSVLG00005013112	EEFSEC (ENSSVLG00005013205) #24	RUVBL1 (ENSSVLG00005013318) #25	SEC61A1 (ENSSVLG00005013613) #26	KBTBD12 (ENSSVLG00005013693) #27	MGLL (ENSSVLG00005013883) #29	ABTB1 (ENSSVLG00005014044) #30	PODXL2 (ENSSVLG00005014162) #31	MCM2 (ENSSVLG00005014217) #32	TPRA1 (ENSSVLG00005014369) #33	PLXNA1 (ENSSVLG00005014487) #35	CHCHD6 (ENSSVLG00005014522) #36	ENSSVLG00005014556	TXNRD3 (ENSSVLG00005014625) #37
Hystricomorpha	ANCESTRAL SPECIES	48	ENSGT00940000156737	ENSGT01030000234553.b.b.d.c.b.b	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915	ENSGT00940000161980 #15	ENSGT00390000014109 #16	ENSGT00950000183041.A.e #17	ENSGT00390000016313.a.b #18	ENSGT00390000018439 #19	ENSGT00730000111536	ENSGT00940000155864.a.b #20	ENSGT00390000009630 #21	ENSGT00940000156315 #22	ENSGT00940000162567 #23	ENSGT00940000158170 #24	ENSGT00940000153556.A #25	ENSGT00390000003721.d.a #26	ENSGT00940000156836 #27	ENSGT00390000011364 #29	ENSGT00390000017131 #30	ENSGT00730000111323 #31	ENSGT01050000244824.F #32	ENSGT00390000016807 #33	ENSGT01050000244850.A.b #35	ENSGT00390000000903.b #36	ENSGT00940000159178 #37	ENSGT00390000013132	ENSGT00390000009671
Hystricomorpha_a	ANCESTRAL SPECIES	6	ENSGT00940000155958	ENSGT00940000156737	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915	ENSGT00940000161980 #15	ENSGT00390000014109 #16	ENSGT00950000183041.A.e #17	ENSGT00390000016313.a.b #18	ENSGT00390000018439 #19	ENSGT00730000111536	ENSGT00940000155864.a.b #20	ENSGT00390000009630 #21	ENSGT00940000156315 #22	ENSGT00940000162567 #23	ENSGT00940000158170 #24	ENSGT00940000153556.A #25	ENSGT00390000003721.d.a #26	ENSGT00940000156836 #27	ENSGT00390000011364 #29	ENSGT00390000017131 #30	ENSGT00730000111323 #31	ENSGT01050000244824.F #32	ENSGT00390000016807 #33	ENSGT01050000244850.A.b #35	ENSGT00390000000903.b #36	ENSGT00940000159178 #37	ENSGT00390000013132	ENSGT00390000009671
Hystricomorpha_b	ANCESTRAL SPECIES	2	ENSGT00940000155958	ENSGT00940000156737	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915	ENSGT00940000161980 #15	ENSGT00390000014109 #16	ENSGT00950000183041.A.e #17	ENSGT00390000016313.a.b #18	ENSGT00390000018439 #19	ENSGT00730000111536	ENSGT00940000155864.a.b #20	ENSGT00390000009630 #21	ENSGT00940000156315 #22	ENSGT00940000162567 #23	ENSGT00940000158170 #24	ENSGT00940000153556.A #25	ENSGT00390000003721.d.a #26	ENSGT00940000156836 #27	ENSGT00390000011364 #29	ENSGT00390000017131 #30	ENSGT00730000111323 #31	ENSGT01050000244824.F #32	ENSGT00390000016807 #33	ENSGT01050000244850.A.b #35	ENSGT00390000000903.b #36	ENSGT00940000159178 #37	ENSGT00390000013132	ENSGT00390000009671
Long-tailed chinchilla	MODERN SPECIES	136	HMCES (ENSCLAG00000007708) #19	H1-10 (ENSCLAG00000008312)	ENSCLAG00000009239 #20	SLC6A11 (ENSCLAG00000005159)	SLC6A1 (ENSCLAG00000004934)	HRH1 (ENSCLAG00000017680)	ATG7 (ENSCLAG00000012476)	VGLL4 (ENSCLAG00000011019)	TAMM41 (ENSCLAG00000013323)	ENSCLAG00000005221	TIMP4 (ENSCLAG00000005949)	PPARG (ENSCLAG00000014746)	TSEN2 (ENSCLAG00000011090)	ENSCLAG00000006333 #20	RPN1 (ENSCLAG00000016036) #21	GATA2 (ENSCLAG00000014980) #22	DNAJB8 (ENSCLAG00000006709) #23	EEFSEC (ENSCLAG00000006973) #24	RUVBL1 (ENSCLAG00000008051) #25	SEC61A1 (ENSCLAG00000004789) #26	KBTBD12 (ENSCLAG00000006214) #27	MGLL (ENSCLAG00000010527) #29	ABTB1 (ENSCLAG00000010398) #30	PODXL2 (ENSCLAG00000011183) #31	MCM2 (ENSCLAG00000013539) #32	TPRA1 (ENSCLAG00000015612) #33	PLXNA1 (ENSCLAG00000007472) #35	CHCHD6 (ENSCLAG00000011198) #36	TXNRD3 (ENSCLAG00000010439) #37	CHCHD4 (ENSCLAG00000015153)	TMEM43 (ENSCLAG00000014810)
Degu	MODERN SPECIES	295												ENSODEG00000002819	RAB7A (ENSODEG00000002835) #20	ENSODEG00000002857	RPN1 (ENSODEG00000002872) #21	GATA2 (ENSODEG00000002888) #22	DNAJB8 (ENSODEG00000018895) #23	EEFSEC (ENSODEG00000002928) #24	RUVBL1 (ENSODEG00000003323) #25	SEC61A1 (ENSODEG00000003340) #26	KBTBD12 (ENSODEG00000003397) #27	MGLL (ENSODEG00000003434) #29	ENSODEG00000003742	ABTB1 (ENSODEG00000003795) #30	PODXL2 (ENSODEG00000003875) #31	MCM2 (ENSODEG00000003959) #32	TPRA1 (ENSODEG00000002274) #33	PLXNA1 (ENSODEG00000002675) #35	ENSODEG00000002815	ENSODEG00000018745	ENSODEG00000001312
Guinea pig	MODERN SPECIES	185											ENSCPOG00000020928	ENSCPOG00000037896 #19	ENSCPOG00000038053	RAB7A (ENSCPOG00000034570) #20	RPN1 (ENSCPOG00000004091) #21	GATA2 (ENSCPOG00000009802) #22	DNAJB8 (ENSCPOG00000030959) #23	EEFSEC (ENSCPOG00000024352) #24	RUVBL1 (ENSCPOG00000009530) #25	SEC61A1 (ENSCPOG00000004865) #26	KBTBD12 (ENSCPOG00000004863) #27	MGLL (ENSCPOG00000003056) #29	ABTB1 (ENSCPOG00000003052) #30	PODXL2 (ENSCPOG00000001424) #31	MCM2 (ENSCPOG00000010112) #32	TPRA1 (ENSCPOG00000026182) #33
Naked mole-rat female	MODERN SPECIES	27	ENSHGLG00000040769	ENSHGLG00000015580	ENSHGLG00000015498	ENSHGLG00000033042 #19	ENSHGLG00000039038 #18	ENSHGLG00000032617	ENSHGLG00000037560	ENSHGLG00000018214	ENSHGLG00000018194	ENSHGLG00000017856	ENSHGLG00000045316	ENSHGLG00000032284	ENSHGLG00000019586	ENSHGLG00000039046	ENSHGLG00000000920 #21	GATA2 (ENSHGLG00000000985) #22	DNAJB8 (ENSHGLG00000046802) #23	ENSHGLG00000037886	ENSHGLG00000000094 #24	ENSHGLG00000000122 #25	ENSHGLG00000002369	HRH1 (ENSHGLG00000044045)	ENSHGLG00000045274	ENSHGLG00000000350	ENSHGLG00000041351 ##20	ENSHGLG00000000740	PPARG (ENSHGLG00000000775)	ENSHGLG00000049460	ENSHGLG00000000808	ENSHGLG00000008376	HDAC11 (ENSHGLG00000007401)
Lagomorpha	ANCESTRAL SPECIES	104							ENSGT00950000183014.f.b.a.b #14	ENSGT00530000064244.a	ENSGT00940000161980 #15	ENSGT00390000014109 #16	ENSGT00950000183041.A.e #17	ENSGT00390000016313.a.b #18	ENSGT00390000018439 #19	ENSGT00940000155864.a.b #20	ENSGT00390000009630 #21	ENSGT00940000156315 #22	ENSGT00940000162567 #23	ENSGT00940000158170 #24	ENSGT00940000153556.A #25	ENSGT00390000003721.d.a #26	ENSGT00940000156836 #27	ENSGT00390000011364 #29	ENSGT00390000017131 #30	ENSGT00730000111323 #31	ENSGT01050000244824.F #32	ENSGT00390000016807 #33	ENSGT01050000244850.A.b #35	ENSGT00390000000903.b #36	ENSGT00940000159178 #37	ENSGT00390000004778	ENSGT00940000161154
Pika	MODERN SPECIES	9703																GATA2 (ENSOPRG00000013303) #22	DNAJB8 (ENSOPRG00000013297) #23