Gnathostomata	ANCESTRAL SPECIES	68	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000171141	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24
Euteleostomi	ANCESTRAL SPECIES	31	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000171141	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.a.b ##32	ENSGT00940000161072	ENSGT00390000009029	ENSGT00390000007364	ENSGT00940000158837	ENSGT00940000154311.a.b
Sarcopterygii	ANCESTRAL SPECIES	14	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000171141	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT00970000197574	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT00940000155539.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000015352 #31	ENSGT00940000154846.a.b ##32	ENSGT00390000008042.A.b #30	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35
Tetrapoda	ANCESTRAL SPECIES	21	ENSGT00940000154534.a	ENSGT00390000011219	ENSGT00640000092844	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603	ENSGT00940000157439	ENSGT00940000160397	ENSGT00940000153704.B	ENSGT00550000074898	ENSGT00940000155246	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00940000165589	ENSGT00940000159730	ENSGT00550000074820	ENSGT00940000159874	ENSGT00440000039055	ENSGT00940000154775.c.a	ENSGT00950000183492	ENSGT00390000014175
Amniota	ANCESTRAL SPECIES	6	ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000171141	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000178790	ENSGT00940000165152
Mammalia	ANCESTRAL SPECIES	6	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000165152	ENSGT00390000006925 #35
Theria	ANCESTRAL SPECIES	5	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000165152	ENSGT00390000006925 #35
Eutheria	ANCESTRAL SPECIES	10	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000165152	ENSGT00390000006925 #35
Boreoeutheria	ANCESTRAL SPECIES	14	ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147620	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000165152	ENSGT00390000006925 #35
Euarchontoglires	ANCESTRAL SPECIES	14	ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147620	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000165152	ENSGT00390000006925 #35
Primates	ANCESTRAL SPECIES	13	ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147620	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Haplorrhini	ANCESTRAL SPECIES	10	ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147620	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Simiiformes	ANCESTRAL SPECIES	15	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00910000147620	ENSGT00390000001170	ENSGT00910000147097	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037.h #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b.k.a #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Catarrhini	ANCESTRAL SPECIES	16	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00910000147620	ENSGT00390000001170	ENSGT00910000147097	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037.h #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b.k.a #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Hominoidea	ANCESTRAL SPECIES	15	ENSGT00940000156095	ENSGT00390000011365.a	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147097	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037.h #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b.k.a #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Hominidae	ANCESTRAL SPECIES	17	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037.h #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b.k.a #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	14															ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037.h #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b.k.a #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Homo/Pan group	ANCESTRAL SPECIES	13														ENSGT00940000156551.g #20	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037.h #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b.k.a #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Human	MODERN SPECIES	11	IL1B (ENSG00000125538) #7	IL37 (ENSG00000125571) #8	IL36G (ENSG00000136688) #9	IL36A (ENSG00000136694) #10	IL36B (ENSG00000136696) #11	IL36RN (ENSG00000136695) #12	IL1F10 (ENSG00000136697) #13	IL1RN (ENSG00000136689) #14	PSD4 (ENSG00000125637) #15	PAX8 (ENSG00000125618) #16	IGKV1OR2-108 (ENSG00000231292) #17	ZNG1B (ENSG00000136682) #18	FOXD4L1 (ENSG00000184492) #19	RABL2A (ENSG00000144134) #20	SLC35F5 (ENSG00000115084) #21	ACTR3 (ENSG00000115091) #22	DPP10 (ENSG00000175497) #23	DDX18 (ENSG00000088205) #24	CCDC93 (ENSG00000125633) #25	INSIG2 (ENSG00000125629) #26	EN1 (ENSG00000163064) #27	MARCO (ENSG00000019169) #28	C1QL2 (ENSG00000144119) #29	STEAP3 (ENSG00000115107) #30	C2orf76 (ENSG00000186132) #31	DBI (ENSG00000155368) #32	TMEM37 (ENSG00000171227) #33	SCTR (ENSG00000080293) #34	CFAP221 (ENSG00000163075) #35	TMEM177 (ENSG00000144120) #36	PTPN4 (ENSG00000088179) #37
Pan	ANCESTRAL SPECIES	12														ENSGT00940000156551.g #20	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037.h #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b.k.a #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Bonobo	DUPLICATION
Bonobo	MODERN SPECIES	369	LAS1L (ENSPPAG00000034161)	ENSPPAG00000029012	MSN (ENSPPAG00000034551)	ENSPPAG00000033953	ENSPPAG00000031010	VSIG4 (ENSPPAG00000033935)	ENSPPAG00000038159	HEPH (ENSPPAG00000037746)	EDA2R (ENSPPAG00000001055)	AR (ENSPPAG00000038688)	OPHN1 (ENSPPAG00000021549)	ENSPPAG00000043601	ENSPPAG00000040306	YIPF6 (ENSPPAG00000041673)	STARD8 (ENSPPAG00000020692)	ENSPPAG00000039447 #22	ENSPPAG00000031265	EFNB1 (ENSPPAG00000040468)	ENSPPAG00000026849	ENSPPAG00000038479	ENSPPAG00000037110	AWAT2 (ENSPPAG00000038307)	OTUD6A (ENSPPAG00000022933)	IGBP1 (ENSPPAG00000042611)	DGAT2L6 (ENSPPAG00000033674)	AWAT1 (ENSPPAG00000042645)	P2RY4 (ENSPPAG00000001712)	ARR3 (ENSPPAG00000029521)	RAB41 (ENSPPAG00000032671)	PDZD11 (ENSPPAG00000040728)	KIF4A (ENSPPAG00000037881)
Bonobo	MODERN SPECIES	15															SLC35F5 (ENSPPAG00000006288) #21	ACTR3 (ENSPPAG00000040697) #22	DPP10 (ENSPPAG00000025416) #23	DDX18 (ENSPPAG00000033473) #24	ENSPPAG00000028222	CCDC93 (ENSPPAG00000039658) #25	INSIG2 (ENSPPAG00000033913) #26	ENSPPAG00000033812	MARCO (ENSPPAG00000038285) #28	C1QL2 (ENSPPAG00000035484) #29	STEAP3 (ENSPPAG00000029473) #30	C2orf76 (ENSPPAG00000041702) #31	DBI (ENSPPAG00000038470) #32	TMEM37 (ENSPPAG00000039178) #33	SCTR (ENSPPAG00000011217) #34	CFAP221 (ENSPPAG00000026562) #35	ENSPPAG00000032632 #36
Gorilla	MODERN SPECIES	15	IL1B (ENSGGOG00000006387) #7	ENSGGOG00000042342 #8	ENSGGOG00000036464 #8	IL36G (ENSGGOG00000015985) #9	IL36A (ENSGGOG00000015991) #10	IL36B (ENSGGOG00000015995) #11	IL36RN (ENSGGOG00000041708) #12	IL1F10 (ENSGGOG00000009415) #13	IL1RN (ENSGGOG00000038739) #14	PSD4 (ENSGGOG00000004574) #15	ENSGGOG00000004587	ENSGGOG00000039313	ENSGGOG00000037637 #17	ENSGGOG00000038564	SLC35F5 (ENSGGOG00000003680) #21	ACTR3 (ENSGGOG00000011346) #22	DPP10 (ENSGGOG00000011936) #23	DDX18 (ENSGGOG00000028420) #24	ENSGGOG00000002919	CCDC93 (ENSGGOG00000002922) #25	INSIG2 (ENSGGOG00000015868) #26	EN1 (ENSGGOG00000024767) #27	MARCO (ENSGGOG00000015585) #28	C1QL2 (ENSGGOG00000012460) #29	STEAP3 (ENSGGOG00000012147) #30	C2orf76 (ENSGGOG00000000842) #31	ENSGGOG00000010372 #32	TMEM37 (ENSGGOG00000010383) #33	SCTR (ENSGGOG00000010385) #34	CFAP221 (ENSGGOG00000015489) #35	ENSGGOG00000042665 #36
Orangutan	MODERN SPECIES	15	UBXN4 (ENSPPYG00000012819)	R3HDM1 (ENSPPYG00000012815)	ENSPPYG00000040048	ENSPPYG00000012814	RAB3GAP1 (ENSPPYG00000012813)	MAP3K19 (ENSPPYG00000012812)	CCNT2 (ENSPPYG00000012811)	ACMSD (ENSPPYG00000012810)	ENSPPYG00000041744	TMEM163 (ENSPPYG00000012809)	MGAT5 (ENSPPYG00000012808)	NCKAP5 (ENSPPYG00000012806)	LYPD1 (ENSPPYG00000038777)	GPR39 (ENSPPYG00000012804)	SLC35F5 (ENSPPYG00000012799) #21	ACTR3 (ENSPPYG00000036644) #22	DPP10 (ENSPPYG00000012797) #23	DDX18 (ENSPPYG00000012796) #24	CCDC93 (ENSPPYG00000012795) #25	INSIG2 (ENSPPYG00000037275) #26	EN1 (ENSPPYG00000012793) #27	MARCO (ENSPPYG00000012792) #28	C1QL2 (ENSPPYG00000030288) #29	STEAP3 (ENSPPYG00000040240) #30	C2BH2orf76 (ENSPPYG00000012789) #31	ENSPPYG00000012788 #32	TMEM37 (ENSPPYG00000030402) #33	SCTR (ENSPPYG00000012786) #34	CFAP221 (ENSPPYG00000012785) #35	TMEM177 (ENSPPYG00000040727) #36	ENSPPYG00000040596
Gibbon	MODERN SPECIES	12	UBXN4 (ENSNLEG00000008675)	R3HDM1 (ENSNLEG00000008622)	ZRANB3 (ENSNLEG00000008561)	ENSNLEG00000030245	RAB3GAP1 (ENSNLEG00000008500)	MAP3K19 (ENSNLEG00000008465)	CCNT2 (ENSNLEG00000008432)	ACMSD (ENSNLEG00000008409)	TMEM163 (ENSNLEG00000008393)	ENSNLEG00000032873	MGAT5 (ENSNLEG00000008354)	NCKAP5 (ENSNLEG00000008327)	LYPD1 (ENSNLEG00000008321)	GPR39 (ENSNLEG00000008318)	SLC35F5 (ENSNLEG00000011590) #21	ACTR3 (ENSNLEG00000011619) #22	DPP10 (ENSNLEG00000011663) #23	DDX18 (ENSNLEG00000011769) #24	ENSNLEG00000031890	CCDC93 (ENSNLEG00000011818) #25	INSIG2 (ENSNLEG00000011862) #26	ENSNLEG00000011873	ENSNLEG00000011874 #27	MARCO (ENSNLEG00000011875) #28	STEAP3 (ENSNLEG00000010277) #30	C2orf76 (ENSNLEG00000028895) #31	ENSNLEG00000010290 #32	TMEM37 (ENSNLEG00000030043) #33	SCTR (ENSNLEG00000010307) #34	CFAP221 (ENSNLEG00000010316) #35	TMEM177 (ENSNLEG00000031534) #36
Cercopithecidae	ANCESTRAL SPECIES	13	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147620	ENSGT00910000147097	ENSGT00940000153470.a.a.a.a	ENSGT00390000011864.o.b	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037.h #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b.k.a #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Rhinopithecus	ANCESTRAL SPECIES	228	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147620	ENSGT00910000147097	ENSGT00940000153470.a.a.a.a	ENSGT00390000011864.o.b	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00910000147551
Golden snub-nosed monkey	MODERN SPECIES	2865										MGAT5 (ENSRROG00000034074)	ENSRROG00000032656	NCKAP5 (ENSRROG00000035987)	LYPD1 (ENSRROG00000030565)	GPR39 (ENSRROG00000034336)	SLC35F5 (ENSRROG00000040638) #21	ACTR3 (ENSRROG00000035324) #22	ENSRROG00000040680
Black snub-nosed monkey	MODERN SPECIES	1704												NCKAP5 (ENSRBIG00000006724)	LYPD1 (ENSRBIG00000027843)	GPR39 (ENSRBIG00000035281)	SLC35F5 (ENSRBIG00000037492) #21	ACTR3 (ENSRBIG00000034918) #22	ENSRBIG00000025217
Cercopithecinae	ANCESTRAL SPECIES	11	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00910000147620	ENSGT00390000001170	ENSGT00910000147097	ENSGT00940000153470.a.a.a.a	ENSGT00390000011864.o.b	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037.h #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b.k.a.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Vervet Monkey	MODERN SPECIES	1	LCT (ENSCSAG00000016321)	UBXN4 (ENSCSAG00000016344)	R3HDM1 (ENSCSAG00000016356)	ENSCSAG00000016361	ZRANB3 (ENSCSAG00000016368)	RAB3GAP1 (ENSCSAG00000016378)	MAP3K19 (ENSCSAG00000016399)	CCNT2 (ENSCSAG00000016413)	ACMSD (ENSCSAG00000016419)	TMEM163 (ENSCSAG00000016424)	MGAT5 (ENSCSAG00000016433)	NCKAP5 (ENSCSAG00000016447)	LYPD1 (ENSCSAG00000016451)	GPR39 (ENSCSAG00000018643)	SLC35F5 (ENSCSAG00000016458) #21	ACTR3 (ENSCSAG00000016462) #22	ENSCSAG00000018642	ENSCSAG00000016467	DPP10 (ENSCSAG00000016475) #23	ENSCSAG00000016482	DDX18 (ENSCSAG00000016508) #24	CCDC93 (ENSCSAG00000016529) #25	INSIG2 (ENSCSAG00000016534) #26	EN1 (ENSCSAG00000016540) #27	MARCO (ENSCSAG00000016551) #28	C1QL2 (ENSCSAG00000016560) #29	STEAP3 (ENSCSAG00000016563) #30	C2orf76 (ENSCSAG00000016566) #31	ENSCSAG00000016572 ##32	TMEM37 (ENSCSAG00000018641) #33	SCTR (ENSCSAG00000016598) #34
Cercopithecinae_a	ANCESTRAL SPECIES	16	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00910000147620	ENSGT00390000001170	ENSGT00910000147097	ENSGT00940000153470.a.a.a.a	ENSGT00390000011864.o.b	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00910000147551	ENSGT00940000154657.D #23	ENSGT00680000100037.h #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b.k.a.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35
Macaca	ANCESTRAL SPECIES	15	ENSGT00940000156095	ENSGT01050000244986.a.a.a.a.b.a.b.b.a.b	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00390000011864.o.b	ENSGT00530000063607.b	ENSGT01030000235139	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00910000147551	ENSGT00940000154657.D #23	ENSGT00680000100037.h #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b.k.a.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35
Pig-tailed macaque	MODERN SPECIES	192	UBXN4 (ENSMNEG00000009382)	R3HDM1 (ENSMNEG00000027793)	ENSMNEG00000042994	ZRANB3 (ENSMNEG00000015978)	RAB3GAP1 (ENSMNEG00000031864)	MAP3K19 (ENSMNEG00000033333)	CCNT2 (ENSMNEG00000042821)	ACMSD (ENSMNEG00000028900)	TMEM163 (ENSMNEG00000032280)	MGAT5 (ENSMNEG00000035554)	ENSMNEG00000042204	NCKAP5 (ENSMNEG00000040558)	LYPD1 (ENSMNEG00000016693)	GPR39 (ENSMNEG00000038370)	SLC35F5 (ENSMNEG00000028365) #21	ACTR3 (ENSMNEG00000012040) #22	ENSMNEG00000018068	DPP10 (ENSMNEG00000034709) #23	DDX18 (ENSMNEG00000032172) #24	ENSMNEG00000045112	CCDC93 (ENSMNEG00000033714) #25	INSIG2 (ENSMNEG00000002739) #26	EN1 (ENSMNEG00000031846) #27	MARCO (ENSMNEG00000030671) #28	C1QL2 (ENSMNEG00000028903) #29	STEAP3 (ENSMNEG00000036721) #30	C2orf76 (ENSMNEG00000005955) #31	DBI (ENSMNEG00000028613) #32	TMEM37 (ENSMNEG00000041781) #33	SCTR (ENSMNEG00000044503) #34	CFAP221 (ENSMNEG00000035728) #35
Macaca_a	ANCESTRAL SPECIES	17	ENSGT00940000156095	ENSGT01050000244986.a.a.a.a.b.a.b.b.a.b	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00940000166898.a.a.b.b.a.a.b.b.b.a	ENSGT00530000063607.b	ENSGT01030000235139	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037.h #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b.k.a.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Rhesus	MODERN SPECIES	3	ZRANB3 (ENSMMUG00000000765)	RAB3GAP1 (ENSMMUG00000014630)	ENSMMUG00000058599	MAP3K19 (ENSMMUG00000017121)	CCNT2 (ENSMMUG00000010196)	ACMSD (ENSMMUG00000010195)	TMEM163 (ENSMMUG00000059634)	MGAT5 (ENSMMUG00000010563)	ENSMMUG00000056889	NCKAP5 (ENSMMUG00000045491)	ENSMMUG00000045065	LYPD1 (ENSMMUG00000058920)	ENSMMUG00000016960	GPR39 (ENSMMUG00000016115)	SLC35F5 (ENSMMUG00000008875) #21	ACTR3 (ENSMMUG00000015032) #22	DPP10 (ENSMMUG00000021403) #23	ENSMMUG00000055362	ENSMMUG00000054335	DDX18 (ENSMMUG00000021343) #24	CCDC93 (ENSMMUG00000039116) #25	INSIG2 (ENSMMUG00000006354) #26	EN1 (ENSMMUG00000057382) #27	MARCO (ENSMMUG00000002610) #28	C1QL2 (ENSMMUG00000016545) #29	STEAP3 (ENSMMUG00000039972) #30	C12H2orf76 (ENSMMUG00000062492) #31	DBI (ENSMMUG00000011126) #32	TMEM37 (ENSMMUG00000060725) #33	SCTR (ENSMMUG00000011128) #34	CFAP221 (ENSMMUG00000011129) #35
Crab-eating macaque	MODERN SPECIES	3	ENSMFAG00000055707	ZRANB3 (ENSMFAG00000034071)	RAB3GAP1 (ENSMFAG00000026109)	MAP3K19 (ENSMFAG00000043568)	CCNT2 (ENSMFAG00000042791)	ACMSD (ENSMFAG00000001001)	TMEM163 (ENSMFAG00000004027)	MGAT5 (ENSMFAG00000002058)	ENSMFAG00000055532	NCKAP5 (ENSMFAG00000035593)	LYPD1 (ENSMFAG00000033924)	ENSMFAG00000055082	ENSMFAG00000054954	GPR39 (ENSMFAG00000041717)	SLC35F5 (ENSMFAG00000001843) #21	ACTR3 (ENSMFAG00000041594) #22	DPP10 (ENSMFAG00000004071) #23	ENSMFAG00000063408	DDX18 (ENSMFAG00000043075) #24	ENSMFAG00000045805	CCDC93 (ENSMFAG00000038632) #25	INSIG2 (ENSMFAG00000033044) #26	EN1 (ENSMFAG00000039390) #27	MARCO (ENSMFAG00000037627) #28	C1QL2 (ENSMFAG00000034573) #29	STEAP3 (ENSMFAG00000002842) #30	ENSMFAG00000002195 #31	TMEM37 (ENSMFAG00000028075) #33	ENSMFAG00000051758 ##32	SCTR (ENSMFAG00000003037) #34	CFAP221 (ENSMFAG00000026339) #35
Cercopithecinae_b	ANCESTRAL SPECIES	10	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00910000147620	ENSGT00390000001170	ENSGT00910000147097	ENSGT00940000153470.a.a.a.a	ENSGT00390000011864.o.b	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00910000147551	ENSGT00940000154657.D #23	ENSGT00680000100037.h #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b.k.a.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35
Cercopithecinae_d	ANCESTRAL SPECIES	163	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00910000147620	ENSGT00390000001170	ENSGT00910000147097	ENSGT00940000153470.a.a.a.a	ENSGT00390000011864.o.b	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00910000147551	ENSGT00940000154657.D #23
Drill	MODERN SPECIES	1680	ENSMLEG00000032050	ZRANB3 (ENSMLEG00000028200)	RAB3GAP1 (ENSMLEG00000043679)	MAP3K19 (ENSMLEG00000032802)	CCNT2 (ENSMLEG00000044356)	ACMSD (ENSMLEG00000032474)	TMEM163 (ENSMLEG00000044365)	ENSMLEG00000043027	MGAT5 (ENSMLEG00000031822)	ENSMLEG00000039102	NCKAP5 (ENSMLEG00000028051)	LYPD1 (ENSMLEG00000035076)	ENSMLEG00000039556	GPR39 (ENSMLEG00000031443)	SLC35F5 (ENSMLEG00000042464) #21	ACTR3 (ENSMLEG00000032560) #22
Sooty mangabey	MODERN SPECIES	156	ENSCATG00000029602	ZRANB3 (ENSCATG00000041950)	RAB3GAP1 (ENSCATG00000035248)	MAP3K19 (ENSCATG00000036468)	CCNT2 (ENSCATG00000026405)	ACMSD (ENSCATG00000034488)	ENSCATG00000024289	TMEM163 (ENSCATG00000038921)	ENSCATG00000037791	MGAT5 (ENSCATG00000033052)	ENSCATG00000038961	NCKAP5 (ENSCATG00000038828)	LYPD1 (ENSCATG00000035955)	GPR39 (ENSCATG00000041836)	SLC35F5 (ENSCATG00000033787) #21	ACTR3 (ENSCATG00000034264) #22	ENSCATG00000016271	DPP10 (ENSCATG00000034523) #23
Olive baboon	DUPLICATION
Olive baboon	MODERN SPECIES	1	ENSPANG00000040035	ZRANB3 (ENSPANG00000007838)	RAB3GAP1 (ENSPANG00000000668)	ENSPANG00000002725	MAP3K19 (ENSPANG00000000669)	CCNT2 (ENSPANG00000020314)	ACMSD (ENSPANG00000012836)	TMEM163 (ENSPANG00000005423)	MGAT5 (ENSPANG00000018425)	ENSPANG00000006778	NCKAP5 (ENSPANG00000019274)	LYPD1 (ENSPANG00000018831)	ENSPANG00000035353	GPR39 (ENSPANG00000003759)	SLC35F5 (ENSPANG00000023058) #21	ACTR3 (ENSPANG00000011576) #22	ENSPANG00000037349	ENSPANG00000038746	DPP10 (ENSPANG00000019222) #23	ENSPANG00000038641	DDX18 (ENSPANG00000019899) #24	ENSPANG00000032709	CCDC93 (ENSPANG00000022335) #25	INSIG2 (ENSPANG00000024543) #26	EN1 (ENSPANG00000030296) #27	C1QL2 (ENSPANG00000000800) #29	STEAP3 (ENSPANG00000019298) #30	ENSPANG00000007242 #31	ENSPANG00000010073 #32	TMEM37 (ENSPANG00000004964) #33	SCTR (ENSPANG00000012987) #34
Olive baboon	MODERN SPECIES	752																ENSPANG00000050522 #22
Platyrrhini	ANCESTRAL SPECIES	9	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147097	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037.h #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b.k.b.a ##32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Mas night monkey	MODERN SPECIES	1247	R3HDM1 (ENSANAG00000035334)	ZRANB3 (ENSANAG00000028768)	RAB3GAP1 (ENSANAG00000021462)	MAP3K19 (ENSANAG00000035315)	CCNT2 (ENSANAG00000004283)	ACMSD (ENSANAG00000033322)	ENSANAG00000036144	TMEM163 (ENSANAG00000030205)	MGAT5 (ENSANAG00000035860)	ENSANAG00000034286	NCKAP5 (ENSANAG00000030595)	LYPD1 (ENSANAG00000023563)	GPR39 (ENSANAG00000036901)	ENSANAG00000036342	SLC35F5 (ENSANAG00000029152) #21	ACTR3 (ENSANAG00000030124) #22	DPP10 (ENSANAG00000037130) #23	ENSANAG00000037489 #24	ENSANAG00000028399	CCDC93 (ENSANAG00000024755) #25	ENSANAG00000036273	INSIG2 (ENSANAG00000021170) #26	EN1 (ENSANAG00000035250) #27	MARCO (ENSANAG00000036056) #28	C1QL2 (ENSANAG00000030662) #29	STEAP3 (ENSANAG00000008427) #30	C2orf76 (ENSANAG00000021190) #31	ENSANAG00000038433 ##32	TMEM37 (ENSANAG00000034529) #33	SCTR (ENSANAG00000028043) #34	CFAP221 (ENSANAG00000030979) #35
Cebidae	ANCESTRAL SPECIES	11	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147097	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037.g.a.a.a ##24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b.k.b.a ##32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Marmoset	MODERN SPECIES	18	MAP3K19 (ENSCJAG00000011631)	ENSCJAG00000085933	CCNT2 (ENSCJAG00000011573)	ACMSD (ENSCJAG00000011557)	TMEM163 (ENSCJAG00000011546)	MGAT5 (ENSCJAG00000011518)	ENSCJAG00000058213	ENSCJAG00000073120	ENSCJAG00000085696	NCKAP5 (ENSCJAG00000014208)	ENSCJAG00000056495	GPR39 (ENSCJAG00000014203)	ENSCJAG00000059169	SLC35F5 (ENSCJAG00000014139) #21	ENSCJAG00000079195	ACTR3 (ENSCJAG00000014091) #22	DPP10 (ENSCJAG00000014051) #23	ENSCJAG00000080269	ENSCJAG00000084423	ENSCJAG00000021414 #24	ENSCJAG00000087131	ENSCJAG00000021415	CCDC93 (ENSCJAG00000021418) #25	INSIG2 (ENSCJAG00000021424) #26	EN1 (ENSCJAG00000041223) #27	MARCO (ENSCJAG00000021426) #28	C1QL2 (ENSCJAG00000040759) #29	STEAP3 (ENSCJAG00000021433) #30	C2orf76 (ENSCJAG00000057183) #31	ENSCJAG00000080731 ##32	TMEM37 (ENSCJAG00000032138) #33
Cebidae_a	ANCESTRAL SPECIES	27	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147097	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037.h #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b.k.b.a ##32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Bolivian squirrel monkey	MODERN SPECIES	87							ENSSBOG00000034088	ACMSD (ENSSBOG00000034521)	TMEM163 (ENSSBOG00000022375)	ENSSBOG00000034190	MGAT5 (ENSSBOG00000033065)	NCKAP5 (ENSSBOG00000031984)	LYPD1 (ENSSBOG00000027244)	GPR39 (ENSSBOG00000035138)	SLC35F5 (ENSSBOG00000034983) #21	ACTR3 (ENSSBOG00000024821) #22	ENSSBOG00000014385	DPP10 (ENSSBOG00000025183) #23	ENSSBOG00000022831	ENSSBOG00000018990	ENSSBOG00000026304 ##24	ENSSBOG00000024815	CCDC93 (ENSSBOG00000028952) #25	INSIG2 (ENSSBOG00000027976) #26	ENSSBOG00000023327	MARCO (ENSSBOG00000021263) #28	C1QL2 (ENSSBOG00000022318) #29	STEAP3 (ENSSBOG00000030743) #30	C2orf76 (ENSSBOG00000034915) #31	ENSSBOG00000034654 ##32	TMEM37 (ENSSBOG00000026372) #33
Capuchin	MODERN SPECIES	95			R3HDM1 (ENSCCAG00000027199)	ZRANB3 (ENSCCAG00000012014)	RAB3GAP1 (ENSCCAG00000035099)	MAP3K19 (ENSCCAG00000026812)	CCNT2 (ENSCCAG00000024931)	ACMSD (ENSCCAG00000032129)	ENSCCAG00000003799	TMEM163 (ENSCCAG00000029154)	MGAT5 (ENSCCAG00000022086)	NCKAP5 (ENSCCAG00000028109)	LYPD1 (ENSCCAG00000034237)	GPR39 (ENSCCAG00000034562)	SLC35F5 (ENSCCAG00000025168) #21	ACTR3 (ENSCCAG00000029825) #22	ENSCCAG00000018282	DPP10 (ENSCCAG00000032303) #23	ENSCCAG00000032311
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	5149															SLC35F5 (ENSTSYG00000007278) #21	ACTR3 (ENSTSYG00000002818) #22
Tarsier	MODERN SPECIES	3737																ENSTSYG00000014386 #22	ENSTSYG00000029576	PMAIP1 (ENSTSYG00000037555)	ENSTSYG00000027744	ENSTSYG00000033526
Strepsirrhini	ANCESTRAL SPECIES	10	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949.c #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Lemuriformes	ANCESTRAL SPECIES	5	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949.c #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b.j #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Mouse lemur	DUPLICATION
Mouse lemur	MODERN SPECIES	30	ENSMICG00000014081	UBXN4 (ENSMICG00000012933)	LCT (ENSMICG00000012949)	MCM6 (ENSMICG00000012968)	DARS1 (ENSMICG00000013832)	CXCR4 (ENSMICG00000013852)	THSD7B (ENSMICG00000047887)	HNMT (ENSMICG00000042723)	ENSMICG00000036028	NXPH2 (ENSMICG00000045401)	ENSMICG00000007371	LRP1B (ENSMICG00000014855)	ENSMICG00000017770	GPR39 (ENSMICG00000031291)	SLC35F5 (ENSMICG00000010476) #21	ENSMICG00000033065 #22	DPP10 (ENSMICG00000032720) #23	ENSMICG00000039700	ENSMICG00000047072 #24	ENSMICG00000017591	CCDC93 (ENSMICG00000017592) #25	INSIG2 (ENSMICG00000046615) #26	EN1 (ENSMICG00000042501) #27	ENSMICG00000017595	ENSMICG00000033839 #29	ENSMICG00000000288 #30	C2orf76 (ENSMICG00000037028) #31	DBI (ENSMICG00000026878) #32	TMEM37 (ENSMICG00000000295) #33	SCTR (ENSMICG00000000297) #34	CFAP221 (ENSMICG00000017212) #35
Mouse lemur	MODERN SPECIES	29	USP44 (ENSMICG00000029998)	NTN4 (ENSMICG00000012141)	ENSMICG00000012153	CCDC38 (ENSMICG00000012156)	AMDHD1 (ENSMICG00000012168)	HAL (ENSMICG00000012174)	LTA4H (ENSMICG00000012198)	ELK3 (ENSMICG00000012211)	CDK17 (ENSMICG00000005540)	CFAP54 (ENSMICG00000015286)	NEDD1 (ENSMICG00000015320)	ENSMICG00000031893	SLC25A3 (ENSMICG00000045036)	IKBIP (ENSMICG00000026540)	ENSMICG00000003528	ENSMICG00000032726 #22	GARIN6 (ENSMICG00000030013)	ANKS1B (ENSMICG00000003540)	BLTP3B (ENSMICG00000010210)	ENSMICG00000016393	DEPDC4 (ENSMICG00000016407)	ENSMICG00000016414	SLC17A8 (ENSMICG00000001586)	NR1H4 (ENSMICG00000013522)	GAS2L3 (ENSMICG00000042318)	ENSMICG00000030149	ENSMICG00000047865	SLC5A8 (ENSMICG00000029503)	UTP20 (ENSMICG00000015736)	ARL1 (ENSMICG00000015801)	SPIC (ENSMICG00000044168)
Lemuriformes_a	ANCESTRAL SPECIES	169	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949.c #21	ENSGT00940000155065 #22	ENSGT00910000147551
Coquerels sifaka	MODERN SPECIES	466	UBXN4 (ENSPCOG00000023917)	R3HDM1 (ENSPCOG00000012698)	ZRANB3 (ENSPCOG00000003732)	ENSPCOG00000017303	RAB3GAP1 (ENSPCOG00000013566)	MAP3K19 (ENSPCOG00000013448)	CCNT2 (ENSPCOG00000024166)	ACMSD (ENSPCOG00000009868)	TMEM163 (ENSPCOG00000003562)	MGAT5 (ENSPCOG00000019388)	NCKAP5 (ENSPCOG00000015437)	ENSPCOG00000014180	LYPD1 (ENSPCOG00000020233)	GPR39 (ENSPCOG00000023485)	SLC35F5 (ENSPCOG00000028424) #21	ACTR3 (ENSPCOG00000024400) #22
Greater bamboo lemur	DUPLICATION
Greater bamboo lemur	MODERN SPECIES	747											NCKAP5 (ENSPSMG00000003118)	LYPD1 (ENSPSMG00000003094)	ENSPSMG00000003082	GPR39 (ENSPSMG00000003080)	SLC35F5 (ENSPSMG00000002919) #21	ACTR3 (ENSPSMG00000002857) #22	ENSPSMG00000002802	ENSPSMG00000002794
Greater bamboo lemur	MODERN SPECIES	591	TNFRSF11B (ENSPSMG00000022348)	COLEC10 (ENSPSMG00000022326)	MAL2 (ENSPSMG00000022322)	CCN3 (ENSPSMG00000022315)	ENPP2 (ENSPSMG00000022281)	TAF2 (ENSPSMG00000022194)	DSCC1 (ENSPSMG00000022143)	DEPTOR (ENSPSMG00000022131)	COL14A1 (ENSPSMG00000022031)	MRPL13 (ENSPSMG00000021817)	MTBP (ENSPSMG00000021807)	SNTB1 (ENSPSMG00000021782)	ENSPSMG00000021769	HAS2 (ENSPSMG00000021763)	ENSPSMG00000021755	ENSPSMG00000021750 #22	RAPGEF2 (ENSPSMG00000021648)	C4orf45 (ENSPSMG00000021458)	FNIP2 (ENSPSMG00000021450)	ENSPSMG00000021409	ETFDH (ENSPSMG00000021357)	C4orf46 (ENSPSMG00000021270)	RXFP1 (ENSPSMG00000021261)	TMEM144 (ENSPSMG00000021184)	GASK1B (ENSPSMG00000021157)	GRIA2 (ENSPSMG00000021111)	GLRB (ENSPSMG00000021023)	PDGFC (ENSPSMG00000020983)	ENSPSMG00000020970	CTSO (ENSPSMG00000020962)	TDO2 (ENSPSMG00000020915)
Euarchontoglires_A	ANCESTRAL SPECIES	13	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000165152	ENSGT00390000006925 #35
Tree shrew	MODERN SPECIES	593																ENSTBEG00000012805 #22
Glires	ANCESTRAL SPECIES	14	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000165152	ENSGT00390000006925 #35
Rodentia	ANCESTRAL SPECIES	14	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000165152	ENSGT00390000006925 #35
Rodentia_B	ANCESTRAL SPECIES	41	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Kangaroo rat	MODERN SPECIES	452	Ubxn4 (ENSDORG00000012991)	ENSDORG00000002670	ENSDORG00000027689	ENSDORG00000004211	Rab3gap1 (ENSDORG00000007961)	Map3k19 (ENSDORG00000023534)	ENSDORG00000026985	Acmsd (ENSDORG00000006096)	Tmem163 (ENSDORG00000015004)	Mgat5 (ENSDORG00000015002)	ENSDORG00000026573	ENSDORG00000030244	ENSDORG00000001242	Gpr39 (ENSDORG00000001240)	Slc35f5 (ENSDORG00000011284) #21	Actr3 (ENSDORG00000011988) #22
Myomorpha	ANCESTRAL SPECIES	54	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Lesser Egyptian jerboa	MODERN SPECIES	72	Svil (ENSJJAG00000019438)	ENSJJAG00000015366	Zfp438 (ENSJJAG00000024201)	ENSJJAG00000007372	Zeb1 (ENSJJAG00000009716)	ENSJJAG00000016042	Arhgap12 (ENSJJAG00000022673)	ENSJJAG00000024357	Fzd8 (ENSJJAG00000013971)	Gjd4 (ENSJJAG00000016842)	Ccny (ENSJJAG00000017981)	Nckap5 (ENSJJAG00000015804)	ENSJJAG00000015262	Gpr39 (ENSJJAG00000004959)	Slc35f5 (ENSJJAG00000021727) #21	Actr3 (ENSJJAG00000007565) #22	Dpp10 (ENSJJAG00000022273) #23	ENSJJAG00000017042 #24	ENSJJAG00000018802	Ccdc93 (ENSJJAG00000014671) #25	Insig2 (ENSJJAG00000023505) #26	ENSJJAG00000015447 #27	Marco (ENSJJAG00000019790) #28	C1ql2 (ENSJJAG00000018412) #29	Steap3 (ENSJJAG00000016586) #30	ENSJJAG00000013605 #31	Dbi (ENSJJAG00000015822) #32	Tmem37 (ENSJJAG00000021074) #33	Sctr (ENSJJAG00000012095) #34	Cfap221 (ENSJJAG00000019558) #35	Tmem177 (ENSJJAG00000009602) #36
Muroidea	ANCESTRAL SPECIES	64	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	889															Slc35f5 (ENSNGAG00000016275) #21	Actr3 (ENSNGAG00000011850) #22	Dpp10 (ENSNGAG00000006547) #23
Muroidea_A	ANCESTRAL SPECIES	12	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Murinae	ANCESTRAL SPECIES	11	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Mus	ANCESTRAL SPECIES	5	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Mus_A	ANCESTRAL SPECIES	5	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Mus_B	ANCESTRAL SPECIES	7	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Mus_C	ANCESTRAL SPECIES	1	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Steppe mouse	MODERN SPECIES	226	Ubxn4 (ENSMSIG00000025769)	R3hdm1 (ENSMSIG00000025791)	Zranb3 (ENSMSIG00000025901)	ENSMSIG00000025963	Rab3gap1 (ENSMSIG00000025984)	Map3k19 (ENSMSIG00000026051)	Ccnt2 (ENSMSIG00000026074)	Acmsd (ENSMSIG00000026123)	Tmem163 (ENSMSIG00000026138)	Mgat5 (ENSMSIG00000026163)	Nckap5 (ENSMSIG00000000300)	ENSMSIG00000001164	ENSMSIG00000001196	Gpr39 (ENSMSIG00000001206)	Slc35f5 (ENSMSIG00000001233) #21	Actr3 (ENSMSIG00000001372) #22	ENSMSIG00000001394	ENSMSIG00000001401
spretus	MODERN SPECIES		Mcm6 (MGP_SPRETEiJ_G0015353)	MGP_SPRETEiJ_G0015352	Ubxn4 (MGP_SPRETEiJ_G0015351)	R3hdm1 (MGP_SPRETEiJ_G0015350)	Zranb3 (MGP_SPRETEiJ_G0015349)	Rab3gap1 (MGP_SPRETEiJ_G0015348)	Map3k19 (MGP_SPRETEiJ_G0015347)	Ccnt2 (MGP_SPRETEiJ_G0015346)	Acmsd (MGP_SPRETEiJ_G0015345)	Tmem163 (MGP_SPRETEiJ_G0015344)	Mgat5 (MGP_SPRETEiJ_G0015343)	Nckap5 (MGP_SPRETEiJ_G0015342)	Lypd1 (MGP_SPRETEiJ_G0015341)	Gpr39 (MGP_SPRETEiJ_G0015340)	Slc35f5 (MGP_SPRETEiJ_G0015339) #21	Actr3 (MGP_SPRETEiJ_G0015338) #22	Dpp10 (MGP_SPRETEiJ_G0015337) #23	Ddx18 (MGP_SPRETEiJ_G0015336) #24	Htr5b (MGP_SPRETEiJ_G0015335)	Ccdc93 (MGP_SPRETEiJ_G0015334) #25	Insig2 (MGP_SPRETEiJ_G0015333) #26	En1 (MGP_SPRETEiJ_G0015332) #27	Marco (MGP_SPRETEiJ_G0015331) #28	C1ql2 (MGP_SPRETEiJ_G0015330) #29	Steap3 (MGP_SPRETEiJ_G0015329) #30	MGP_SPRETEiJ_G0015328 #31	Dbi (MGP_SPRETEiJ_G0015327) #32	Tmem37 (MGP_SPRETEiJ_G0015326) #33	Sctr (MGP_SPRETEiJ_G0015325) #34	Cfap221 (MGP_SPRETEiJ_G0015324) #35	Tmem177 (MGP_SPRETEiJ_G0015323) #36
Mouse	MODERN SPECIES		Mcm6 (ENSMUSG00000026355)	Lct (ENSMUSG00000026354)	Ubxn4 (ENSMUSG00000026353)	R3hdm1 (ENSMUSG00000056211)	Zranb3 (ENSMUSG00000036086)	Rab3gap1 (ENSMUSG00000036104)	Map3k19 (ENSMUSG00000051590)	Ccnt2 (ENSMUSG00000026349)	Acmsd (ENSMUSG00000026348)	Tmem163 (ENSMUSG00000026347)	Mgat5 (ENSMUSG00000036155)	Nckap5 (ENSMUSG00000049690)	Lypd1 (ENSMUSG00000026344)	Gpr39 (ENSMUSG00000026343)	Slc35f5 (ENSMUSG00000026342) #21	Actr3 (ENSMUSG00000026341) #22	Dpp10 (ENSMUSG00000036815) #23	Ddx18 (ENSMUSG00000001674) #24	Htr5b (ENSMUSG00000050534)	Ccdc93 (ENSMUSG00000026339) #25	Insig2 (ENSMUSG00000003721) #26	En1 (ENSMUSG00000058665) #27	Marco (ENSMUSG00000026390) #28	C1ql2 (ENSMUSG00000036907) #29	Steap3 (ENSMUSG00000026389) #30	3110009E18Rik (ENSMUSG00000026388)	Dbi (ENSMUSG00000026385) #32	Tmem37 (ENSMUSG00000050777) #33	Sctr (ENSMUSG00000026387) #34	Cfap221 (ENSMUSG00000036962) #35	Tmem177 (ENSMUSG00000036975) #36
Ryukyu mouse	MODERN SPECIES		Mcm6 (MGP_CAROLIEiJ_G0014546)	Lct (MGP_CAROLIEiJ_G0014545)	Ubxn4 (MGP_CAROLIEiJ_G0014544)	R3hdm1 (MGP_CAROLIEiJ_G0014543)	Zranb3 (MGP_CAROLIEiJ_G0014542)	Rab3gap1 (MGP_CAROLIEiJ_G0014541)	Map3k19 (MGP_CAROLIEiJ_G0014540)	Ccnt2 (MGP_CAROLIEiJ_G0014539)	Acmsd (MGP_CAROLIEiJ_G0014538)	Tmem163 (MGP_CAROLIEiJ_G0014537)	Mgat5 (MGP_CAROLIEiJ_G0014536)	Nckap5 (MGP_CAROLIEiJ_G0014535)	Lypd1 (MGP_CAROLIEiJ_G0014534)	Gpr39 (MGP_CAROLIEiJ_G0014533)	Slc35f5 (MGP_CAROLIEiJ_G0014532) #21	Actr3 (MGP_CAROLIEiJ_G0014531) #22	Dpp10 (MGP_CAROLIEiJ_G0014530) #23	Ddx18 (MGP_CAROLIEiJ_G0014529) #24	Htr5b (MGP_CAROLIEiJ_G0014528)	Ccdc93 (MGP_CAROLIEiJ_G0014527) #25	Insig2 (MGP_CAROLIEiJ_G0014526) #26	En1 (MGP_CAROLIEiJ_G0014525) #27	Marco (MGP_CAROLIEiJ_G0014524) #28	C1ql2 (MGP_CAROLIEiJ_G0014523) #29	Steap3 (MGP_CAROLIEiJ_G0014522) #30	MGP_CAROLIEiJ_G0014521 #31	MGP_CAROLIEiJ_G0014520 #32	Tmem37 (MGP_CAROLIEiJ_G0014519) #33	MGP_CAROLIEiJ_G0014518 #34	Cfap221 (MGP_CAROLIEiJ_G0014517) #35	Tmem177 (MGP_CAROLIEiJ_G0014516) #36
Shrew mouse	MODERN SPECIES	18	Mcm6 (MGP_PahariEiJ_G0027782)	Lct (MGP_PahariEiJ_G0027781)	Ubxn4 (MGP_PahariEiJ_G0027780)	R3hdm1 (MGP_PahariEiJ_G0027779)	Zranb3 (MGP_PahariEiJ_G0027778)	Rab3gap1 (MGP_PahariEiJ_G0027777)	MGP_PahariEiJ_G0027776	Ccnt2 (MGP_PahariEiJ_G0027775)	Acmsd (MGP_PahariEiJ_G0027774)	Tmem163 (MGP_PahariEiJ_G0027773)	Mgat5 (MGP_PahariEiJ_G0027772)	Nckap5 (MGP_PahariEiJ_G0027771)	Lypd1 (MGP_PahariEiJ_G0027770)	Gpr39 (MGP_PahariEiJ_G0027769)	Slc35f5 (MGP_PahariEiJ_G0027768) #21	Actr3 (MGP_PahariEiJ_G0027767) #22	Dpp10 (MGP_PahariEiJ_G0027766) #23	Ddx18 (MGP_PahariEiJ_G0027765) #24	Htr5b (MGP_PahariEiJ_G0027764)	Ccdc93 (MGP_PahariEiJ_G0027763) #25	Insig2 (MGP_PahariEiJ_G0027762) #26	En1 (MGP_PahariEiJ_G0027761) #27	Marco (MGP_PahariEiJ_G0027760) #28	C1ql2 (MGP_PahariEiJ_G0027759) #29	Steap3 (MGP_PahariEiJ_G0027758) #30	MGP_PahariEiJ_G0027757 #31	Dbi (MGP_PahariEiJ_G0027756) #32	Tmem37 (MGP_PahariEiJ_G0027755) #33	MGP_PahariEiJ_G0027754 #34	Cfap221 (MGP_PahariEiJ_G0027753) #35	Tmem177 (MGP_PahariEiJ_G0027752) #36
Rat	MODERN SPECIES	4	R3hdm1 (ENSRNOG00000004099)	Zranb3 (ENSRNOG00000003979)	Rab3gap1 (ENSRNOG00000003953)	Map3k19 (ENSRNOG00000003952)	Ccnt2 (ENSRNOG00000017113)	Acmsd (ENSRNOG00000003884)	Tmem163 (ENSRNOG00000003769)	Mgat5 (ENSRNOG00000003614)	ENSRNOG00000066401	tuba1c-ps1 (ENSRNOG00000070079)	Nckap5 (ENSRNOG00000021553)	Lypd1 (ENSRNOG00000003453)	Gpr39 (ENSRNOG00000021586)	Slc35f5 (ENSRNOG00000003403) #21	LOC100362110 (ENSRNOG00000030481)	Actr3 (ENSRNOG00000003206) #22	Dpp10 (ENSRNOG00000002595) #23	LOC103690298 (ENSRNOG00000029868)	Htr5b (ENSRNOG00000002549)	Ccdc93 (ENSRNOG00000002514) #25	Insig2 (ENSRNOG00000002478) #26	Tpt1-ps1 (ENSRNOG00000069572)	En1 (ENSRNOG00000056580) #27	Marco (ENSRNOG00000049303) #28	C1ql2 (ENSRNOG00000046863) #29	Steap3 (ENSRNOG00000049471) #30	C13h2orf76 (ENSRNOG00000045570) #31	Dbi (ENSRNOG00000046889) #32	Tmem37 (ENSRNOG00000047714) #33	Sctr (ENSRNOG00000049766) #34	Cfap221 (ENSRNOG00000056781) #35
Cricetidae	ANCESTRAL SPECIES	13	ENSGT01050000244824.D.b	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Cricetidae_B	ANCESTRAL SPECIES	8	ENSGT01050000244824.D.b	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Northern American deer mouse	MODERN SPECIES	2	Mcm6 (ENSPEMG00000020021)	Lct (ENSPEMG00000019494)	Ubxn4 (ENSPEMG00000010932)	R3hdm1 (ENSPEMG00000015187)	Zranb3 (ENSPEMG00000020506)	Rab3gap1 (ENSPEMG00000021375)	Map3k19 (ENSPEMG00000031034)	Ccnt2 (ENSPEMG00000020594)	Acmsd (ENSPEMG00000022800)	Tmem163 (ENSPEMG00000026492)	Mgat5 (ENSPEMG00000011505)	Nckap5 (ENSPEMG00000011621)	Lypd1 (ENSPEMG00000024961)	Gpr39 (ENSPEMG00000018261)	Slc35f5 (ENSPEMG00000016352) #21	Actr3 (ENSPEMG00000013664) #22	Dpp10 (ENSPEMG00000000215) #23	ENSPEMG00000026874	ENSPEMG00000031118	Ddx18 (ENSPEMG00000010438) #24	Htr5b (ENSPEMG00000008772)	Ccdc93 (ENSPEMG00000013504) #25	Insig2 (ENSPEMG00000011061) #26	ENSPEMG00000009245	Marco (ENSPEMG00000000377) #28	C1ql2 (ENSPEMG00000027803) #29	Steap3 (ENSPEMG00000023815) #30	ENSPEMG00000023706 #31	Dbi (ENSPEMG00000023060) #32	Tmem37 (ENSPEMG00000022811) #33	Sctr (ENSPEMG00000012122) #34
Prairie vole	MODERN SPECIES	14	Dars (ENSMOCG00000021532)	Cxcr4 (ENSMOCG00000002883)	ENSMOCG00000022887	Thsd7b (ENSMOCG00000013052)	ENSMOCG00000021535	Rab3gap1 (ENSMOCG00000008132)	Map3k19 (ENSMOCG00000013038)	Ccnt2 (ENSMOCG00000002940)	Acmsd (ENSMOCG00000014467)	Tmem163 (ENSMOCG00000022463)	Mgat5 (ENSMOCG00000022128)	ENSMOCG00000015715	Lypd1 (ENSMOCG00000012749)	Gpr39 (ENSMOCG00000014214)	Slc35f5 (ENSMOCG00000020193) #21	Actr3 (ENSMOCG00000016811) #22	ENSMOCG00000018044	Dpp10 (ENSMOCG00000018108) #23	ENSMOCG00000012842 #24	ENSMOCG00000022314	Ccdc93 (ENSMOCG00000014441) #25	Insig2 (ENSMOCG00000022239) #26	En1 (ENSMOCG00000021118) #27	Marco (ENSMOCG00000005754) #28	C1ql2 (ENSMOCG00000015563) #29	Steap3 (ENSMOCG00000008386) #30	ENSMOCG00000009556 #31	Dbi (ENSMOCG00000020761) #32	Tmem37 (ENSMOCG00000008468) #33	Sctr (ENSMOCG00000002265) #34	Cfap221 (ENSMOCG00000019701) #35
Cricetinae	ANCESTRAL SPECIES	4	ENSGT01050000244824.D.b	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b.m #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Chinese hamster chok1gshd	MODERN SPECIES	2	R3hdm1 (ENSCGRG00001012357)	ENSCGRG00001006066	Zranb3 (ENSCGRG00001000424)	Rab3gap1 (ENSCGRG00001021319)	Map3k19 (ENSCGRG00001013377)	Ccnt2 (ENSCGRG00001018905)	Acmsd (ENSCGRG00001020813)	ENSCGRG00001024550	Tmem163 (ENSCGRG00001020380)	MGAT5 (ENSCGRG00001021442)	ENSCGRG00001004696	Nckap5 (ENSCGRG00001017969)	Lypd1 (ENSCGRG00001015904)	Gpr39 (ENSCGRG00001018849)	Slc35f5 (ENSCGRG00001020752) #21	Actr3 (ENSCGRG00001003441) #22	Dpp10 (ENSCGRG00001021005) #23	ENSCGRG00001007041	ENSCGRG00001012190	ENSCGRG00001010803 #24	Htr5b (ENSCGRG00001012462)	Ccdc93 (ENSCGRG00001019734) #25	Insig2 (ENSCGRG00001016199) #26	En1 (ENSCGRG00001020962) #27	Marco (ENSCGRG00001024756) #28	C1ql2 (ENSCGRG00001007909) #29	Steap3 (ENSCGRG00001009470) #30	ENSCGRG00001013961 #31	ENSCGRG00001016035 #32	Tmem37 (ENSCGRG00001002385) #33	Sctr (ENSCGRG00001005944) #34
Golden Hamster	MODERN SPECIES	711	Mcm6 (ENSMAUG00000000085)	Lct (ENSMAUG00000001383)	Ubxn4 (ENSMAUG00000002324)	R3hdm1 (ENSMAUG00000010315)	Zranb3 (ENSMAUG00000002029)	Rab3gap1 (ENSMAUG00000004952)	ENSMAUG00000016085	Map3k19 (ENSMAUG00000010654)	Ccnt2 (ENSMAUG00000009688)	Acmsd (ENSMAUG00000011487)	Tmem163 (ENSMAUG00000012260)	Mgat5 (ENSMAUG00000016950)	Nckap5 (ENSMAUG00000014045)	Gpr39 (ENSMAUG00000013127)	Slc35f5 (ENSMAUG00000011137) #21	ENSMAUG00000014128 #22	Dpp10 (ENSMAUG00000002914) #23	ENSMAUG00000017530
Rodentia_A	ANCESTRAL SPECIES	13	ENSGT01050000244824.D.b	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000165152	ENSGT00390000006925 #35
Sciuridae	ANCESTRAL SPECIES	10	ENSGT01050000244824.D.b	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352.h #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000165152	ENSGT00390000006925 #35
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	12	ZRANB3 (ENSSVLG00005002019)	RAB3GAP1 (ENSSVLG00005001809)	ENSSVLG00005001704	MAP3K19 (ENSSVLG00005001601)	CCNT2 (ENSSVLG00005001535)	ACMSD (ENSSVLG00005001482)	ENSSVLG00005001460	TMEM163 (ENSSVLG00005001446)	MGAT5 (ENSSVLG00005001430)	NCKAP5 (ENSSVLG00005001316)	LYPD1 (ENSSVLG00005001165)	GPR39 (ENSSVLG00005001131)	ENSSVLG00005001116	ENSSVLG00005001047 #21	ENSSVLG00005000990	ENSSVLG00005000959 #22	ENSSVLG00005000918	DPP10 (ENSSVLG00005000789) #23	ENSSVLG00005000672	ENSSVLG00005000638 #24	ENSSVLG00005000613	CCDC93 (ENSSVLG00005000586) #25	INSIG2 (ENSSVLG00005000562) #26	EN1 (ENSSVLG00005000531) #27	MARCO (ENSSVLG00005000500) #28	C1QL2 (ENSSVLG00005000478) #29	STEAP3 (ENSSVLG00005000464) #30	C2orf76 (ENSSVLG00005000450) #31	DBI (ENSSVLG00005000415) #32	TMEM37 (ENSSVLG00005000377) #33	SCTR (ENSSVLG00005000343) #34
Eurasian red squirrel	MODERN SPECIES	14	ENSSVLG00005001178	CLEC4D (ENSSVLG00005001211)	CLEC6A (ENSSVLG00005001235)	ENSSVLG00005001261	ENSSVLG00005001276	ENSSVLG00005001309	ENSSVLG00005001324	ENSSVLG00005001341	ENSSVLG00005001402	FOXJ2 (ENSSVLG00005001472)	C3AR1 (ENSSVLG00005001489)	NECAP1 (ENSSVLG00005001532)	ENSSVLG00005001582	ENSSVLG00005001608	ENSSVLG00005001656	ENSSVLG00005001716 #22	ENSSVLG00005001730	ENSSVLG00005001746	GDF3 (ENSSVLG00005001758)	ENSSVLG00005001774	APOBEC1 (ENSSVLG00005001792)	AICDA (ENSSVLG00005001822)	MFAP5 (ENSSVLG00005001921)	ENSSVLG00005002030	RIMKLB (ENSSVLG00005002054)	ENSSVLG00005002073	PHC1 (ENSSVLG00005002104)	M6PR (ENSSVLG00005002144)	KLRG1 (ENSSVLG00005002175)	ENSSVLG00005002197	A2M (ENSSVLG00005002236)
Marmotini	ANCESTRAL SPECIES	2										ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352.h #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000165152	ENSGT00390000006925 #35
Alpin marmot	MODERN SPECIES	75									ENSMMMG00000022750	TMEM163 (ENSMMMG00000022747)	MGAT5 (ENSMMMG00000022745)	NCKAP5 (ENSMMMG00000022713)	LYPD1 (ENSMMMG00000022706)	GPR39 (ENSMMMG00000022704)	SLC35F5 (ENSMMMG00000022698) #21	ACTR3 (ENSMMMG00000022696) #22	DPP10 (ENSMMMG00000022691) #23	DDX18 (ENSMMMG00000022676) #24	ENSMMMG00000022675	CCDC93 (ENSMMMG00000022668) #25	INSIG2 (ENSMMMG00000022666) #26	ENSMMMG00000022662 #28	C1QL2 (ENSMMMG00000022661) #29	STEAP3 (ENSMMMG00000022653) #30	C2orf76 (ENSMMMG00000022651) #31	DBI (ENSMMMG00000022647) #32	TMEM37 (ENSMMMG00000022646) #33	SCTR (ENSMMMG00000022635) #34	ENSMMMG00000022630	ENSMMMG00000022627 #35	TMEM177 (ENSMMMG00000022626) #36
Marmotini_b	ANCESTRAL SPECIES	10										ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b.i	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT00940000155539.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352.h #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000165152	ENSGT00390000010354 #36
Squirrel	MODERN SPECIES	69											MGAT5 (ENSSTOG00000004740)	NCKAP5 (ENSSTOG00000027624)	LYPD1 (ENSSTOG00000025677)	GPR39 (ENSSTOG00000022199)	SLC35F5 (ENSSTOG00000003270) #21	ACTR3 (ENSSTOG00000011414) #22	DPP10 (ENSSTOG00000014468) #23	DDX18 (ENSSTOG00000010541) #24	ENSSTOG00000010554	CCDC93 (ENSSTOG00000010558) #25	INSIG2 (ENSSTOG00000010764) #26	ENSSTOG00000021609 #27	C1QL2 (ENSSTOG00000021568) #29	STEAP3 (ENSSTOG00000008264) #30	C2orf76 (ENSSTOG00000006753) #31	DBI (ENSSTOG00000006759) #32	TMEM37 (ENSSTOG00000006768) #33	SCTR (ENSSTOG00000006773) #34	ENSSTOG00000032843	TMEM177 (ENSSTOG00000029730) #36	PTPN4 (ENSSTOG00000015978) #37
Arctic ground squirrel	MODERN SPECIES	180														ENSUPAG00010006676	SLC35F5 (ENSUPAG00010006686) #21	ACTR3 (ENSUPAG00010006709) #22	DPP10 (ENSUPAG00010006733) #23	DDX18 (ENSUPAG00010006834) #24
Hystricomorpha	ANCESTRAL SPECIES	20	ENSGT01050000244824.D.b.d	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Hystricomorpha_a	ANCESTRAL SPECIES	17	ENSGT01050000244824.D.b.d	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Guinea pig	MODERN SPECIES	3	R3HDM1 (ENSCPOG00000012784)	ENSCPOG00000010385	RAB3GAP1 (ENSCPOG00000008653)	MAP3K19 (ENSCPOG00000004758)	ENSCPOG00000023350	CCNT2 (ENSCPOG00000003960)	ACMSD (ENSCPOG00000003832)	TMEM163 (ENSCPOG00000004944)	MGAT5 (ENSCPOG00000004942)	NCKAP5 (ENSCPOG00000011594)	LYPD1 (ENSCPOG00000037678)	ENSCPOG00000020207	GPR39 (ENSCPOG00000004139)	SLC35F5 (ENSCPOG00000008212) #21	ENSCPOG00000032878	ACTR3 (ENSCPOG00000032478) #22	DPP10 (ENSCPOG00000004892) #23	DDX18 (ENSCPOG00000007532) #24	ENSCPOG00000000511	CCDC93 (ENSCPOG00000036417) #25	ENSCPOG00000036244 #26	EN1 (ENSCPOG00000014063) #27	MARCO (ENSCPOG00000003499) #28	C1QL2 (ENSCPOG00000025695) #29	STEAP3 (ENSCPOG00000006387) #30	C2orf76 (ENSCPOG00000038860) #31	DBI (ENSCPOG00000000415) #32	ENSCPOG00000019725	TMEM37 (ENSCPOG00000032025) #33	SCTR (ENSCPOG00000015317) #34	ENSCPOG00000004735
Hystricomorpha_b	ANCESTRAL SPECIES	67	ENSGT01050000244824.D.b.d	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Long-tailed chinchilla	MODERN SPECIES	166															SLC35F5 (ENSCLAG00000002345) #21	ACTR3 (ENSCLAG00000005698) #22	DPP10 (ENSCLAG00000004961) #23	DDX18 (ENSCLAG00000004684) #24	ENSCLAG00000004250	CCDC93 (ENSCLAG00000004008) #25	INSIG2 (ENSCLAG00000003631) #26	ENSCLAG00000003601 #27	MARCO (ENSCLAG00000003783) #28	C1QL2 (ENSCLAG00000002797) #29	STEAP3 (ENSCLAG00000002741) #30	ENSCLAG00000002520 #31	DBI (ENSCLAG00000002481) #32	TMEM37 (ENSCLAG00000004567) #33	SCTR (ENSCLAG00000003965) #34	CFAP221 (ENSCLAG00000003127) #35	TMEM177 (ENSCLAG00000002898) #36
Degu	DUPLICATION
Degu	MODERN SPECIES	55	RAB3GAP1 (ENSODEG00000009115)	MAP3K19 (ENSODEG00000007486)	ENSODEG00000008322	ACMSD (ENSODEG00000007750)	ENSODEG00000019401	TMEM163 (ENSODEG00000011042)	MGAT5 (ENSODEG00000007626)	ENSODEG00000007582	ENSODEG00000007263	LYPD1 (ENSODEG00000006977)	ENSODEG00000006743	GPR39 (ENSODEG00000007476)	ENSODEG00000007110	ENSODEG00000008310 #21	ENSODEG00000008133	ENSODEG00000006746 #22	ENSODEG00000019411	DPP10 (ENSODEG00000007040) #23	ENSODEG00000007261	ENSODEG00000009186	DDX18 (ENSODEG00000007330) #24	CCDC93 (ENSODEG00000006407) #25	ENSODEG00000008015 #26	ENSODEG00000007637	EN1 (ENSODEG00000007479) #27	MARCO (ENSODEG00000009185) #28	C1QL2 (ENSODEG00000007608) #29	STEAP3 (ENSODEG00000007304) #30	C2orf76 (ENSODEG00000006814) #31	DBI (ENSODEG00000006339) #32	TMEM37 (ENSODEG00000009992) #33
Degu	MODERN SPECIES	42	ZNF451 (ENSODEG00000015693)	ENSODEG00000015324	ENSODEG00000015963	RAB23 (ENSODEG00000016056)	PRIM2 (ENSODEG00000015933)	KHDRBS2 (ENSODEG00000015927)	ENSODEG00000016695	ENSODEG00000015713	ENSODEG00000016016	LGSN (ENSODEG00000016651)	ENSODEG00000016255	ENSODEG00000020332	ENSODEG00000015899	ENSODEG00000015590	ENSODEG00000016630	ENSODEG00000015661 #22	ENSODEG00000016000	ENSODEG00000015697	ENSODEG00000016046	ENSODEG00000015414	ENSODEG00000015537	ENSODEG00000016200	ZNF366 (ENSODEG00000015681)	PTCD2 (ENSODEG00000016417)	ENSODEG00000016220	MRPS27 (ENSODEG00000016210)	ENSODEG00000015665	ENSODEG00000016114	ENSODEG00000015884	CARTPT (ENSODEG00000015860)	MCCC2 (ENSODEG00000016026)
Degu	MODERN SPECIES	69															ENSODEG00000009042	ENSODEG00000007147 #22	ENSODEG00000006710	MTHFD2L (ENSODEG00000007207)	EPGN (ENSODEG00000006108)	EREG (ENSODEG00000006095)	AREG (ENSODEG00000006514)	BTC (ENSODEG00000009726)	PARM1 (ENSODEG00000006846)	RCHY1 (ENSODEG00000010052)	ENSODEG00000007180	ENSODEG00000006617	CDKL2 (ENSODEG00000007091)	ENSODEG00000006601	USO1 (ENSODEG00000007153)	ENSODEG00000007348	PPEF2 (ENSODEG00000007849)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	27	ENSHGLG00000032120	ENSHGLG00000008487	ENSHGLG00000008840	HSD17B11 (ENSHGLG00000009549)	NUDT9 (ENSHGLG00000010306)	ENSHGLG00000010648	SPARCL1 (ENSHGLG00000011108)	ENSHGLG00000041536	DMP1 (ENSHGLG00000047355)	IBSP (ENSHGLG00000011597)	MEPE (ENSHGLG00000049259)	SPP1 (ENSHGLG00000012567)	ENSHGLG00000012710	ENSHGLG00000009525	ENSHGLG00000010362	ENSHGLG00000014204 #22	USO1 (ENSHGLG00000014182)	G3BP2 (ENSHGLG00000043631)	CDKL2 (ENSHGLG00000013277)	ENSHGLG00000013662	THAP6 (ENSHGLG00000043261)	ENSHGLG00000017025	PARM1 (ENSHGLG00000017045)	BTC (ENSHGLG00000010995)	AREG (ENSHGLG00000011242)	EREG (ENSHGLG00000011440)	ENSHGLG00000036014	MTHFD2L (ENSHGLG00000011885)	ENSHGLG00000047550	ENSHGLG00000045767	ENSHGLG00000042687
Naked mole-rat female	MODERN SPECIES	22	TMEFF2 (ENSHGLG00000014352)	ENSHGLG00000038831	NABP1 (ENSHGLG00000039589)	MYO1B (ENSHGLG00000001644)	STAT4 (ENSHGLG00000003160)	STAT1 (ENSHGLG00000003617)	ENSHGLG00000048389	ENSHGLG00000006028	ENSHGLG00000041459	ENSHGLG00000001132	NEMP2 (ENSHGLG00000001338)	MFSD6 (ENSHGLG00000001558)	INPP1 (ENSHGLG00000032929)	HIBCH (ENSHGLG00000002337)	ENSHGLG00000044500	ENSHGLG00000007656 #22	ENSHGLG00000042578	ENSHGLG00000005121 #23	ENSHGLG00000047626	ENSHGLG00000038322	ENSHGLG00000040375	ENSHGLG00000010182	ENSHGLG00000044680	ENSHGLG00000034383	DDX18 (ENSHGLG00000016324) #24	ENSHGLG00000042944	ENSHGLG00000016311 #25	INSIG2 (ENSHGLG00000048151) #26	EN1 (ENSHGLG00000008502) #27	MARCO (ENSHGLG00000007212) #28	C1QL2 (ENSHGLG00000005027) #29
Naked mole-rat female	MODERN SPECIES	6	TRPC4AP (ENSHGLG00000015614)	GSS (ENSHGLG00000013619)	ENSHGLG00000049123	ACSS2 (ENSHGLG00000013444)	GGT7 (ENSHGLG00000007389)	ENSHGLG00000005296	ENSHGLG00000020370	TP53INP2 (ENSHGLG00000033209)	ENSHGLG00000008565	MAP1LC3A (ENSHGLG00000009257)	ENSHGLG00000010397	ITCH (ENSHGLG00000005001)	AHCY (ENSHGLG00000009751)	ENSHGLG00000031940	RALY (ENSHGLG00000017779)	ENSHGLG00000042490 #22	ENSHGLG00000032344	ENSHGLG00000041357	ZNF341 (ENSHGLG00000013786)	PXMP4 (ENSHGLG00000016991)	ENSHGLG00000041428	E2F1 (ENSHGLG00000009301)	ENSHGLG00000009659	CBFA2T2 (ENSHGLG00000018266)	ENSHGLG00000047164	ENSHGLG00000018147	SNTA1 (ENSHGLG00000006583)	CDK5RAP1 (ENSHGLG00000005146)	ENSHGLG00000039669
Naked mole-rat female	MODERN SPECIES	11	ENSHGLG00000035571	ENSHGLG00000012925	SLC35A5 (ENSHGLG00000011730)	ENSHGLG00000010696	CCDC80 (ENSHGLG00000010040)	ENSHGLG00000017568	ENSHGLG00000018701	ENSHGLG00000039135	ENSHGLG00000018706	GTPBP8 (ENSHGLG00000018819)	NEPRO (ENSHGLG00000018829)	BOC (ENSHGLG00000016908)	CFAP44 (ENSHGLG00000016857)	SPICE1 (ENSHGLG00000013844)	SIDT1 (ENSHGLG00000012121)	ENSHGLG00000050610 #22	USF3 (ENSHGLG00000049683)	NAA50 (ENSHGLG00000050182)	ATP6V1A (ENSHGLG00000012241)	ENSHGLG00000050407	GRAMD1C (ENSHGLG00000016163)	ZDHHC23 (ENSHGLG00000047482)	ENSHGLG00000013354	CCDC191 (ENSHGLG00000011453)	ENSHGLG00000039283	ENSHGLG00000010705	DRD3 (ENSHGLG00000018420)	TIGIT (ENSHGLG00000014219)	ZBTB20 (ENSHGLG00000014197)	ENSHGLG00000006166	ENSHGLG00000046774
Lagomorpha	ANCESTRAL SPECIES	12	ENSGT01050000244824.D.b	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36	ENSGT00940000157211 #37
Pika	MODERN SPECIES	388																ACTR3 (ENSOPRG00000009211) #22
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	18	ENSOCUG00000000293	UBXN4 (ENSOCUG00000000291)	R3HDM1 (ENSOCUG00000017366)	ZRANB3 (ENSOCUG00000007243)	RAB3GAP1 (ENSOCUG00000002022)	ENSOCUG00000029409	MAP3K19 (ENSOCUG00000000666)	CCNT2 (ENSOCUG00000000661)	TMEM163 (ENSOCUG00000011107)	MGAT5 (ENSOCUG00000011096)	NCKAP5 (ENSOCUG00000000184)	LYPD1 (ENSOCUG00000000182)	GPR39 (ENSOCUG00000000181)	ENSOCUG00000014530	SLC35F5 (ENSOCUG00000013099) #21	ACTR3 (ENSOCUG00000004395) #22	ENSOCUG00000030005	DPP10 (ENSOCUG00000008378) #23	ENSOCUG00000025480	ENSOCUG00000031080	DDX18 (ENSOCUG00000012586) #24	ENSOCUG00000016884	CCDC93 (ENSOCUG00000005932) #25	INSIG2 (ENSOCUG00000005251) #26	EN1 (ENSOCUG00000011901) #27	MARCO (ENSOCUG00000006893) #28	STEAP3 (ENSOCUG00000013423) #30	ENSOCUG00000004561 #31	DBI (ENSOCUG00000004566) #32	TMEM37 (ENSOCUG00000017907) #33	SCTR (ENSOCUG00000007710) #34
Rabbit	MODERN SPECIES	14	NDUFB9 (ENSOCUG00000025074)	MTSS1 (ENSOCUG00000008102)	ENSOCUG00000030136	ZNF572 (ENSOCUG00000039324)	SQLE (ENSOCUG00000015771)	WASHC5 (ENSOCUG00000015785)	NSMCE2 (ENSOCUG00000008539)	ENSOCUG00000030414	TRIB1 (ENSOCUG00000024295)	ENSOCUG00000037909	LRATD2 (ENSOCUG00000003500)	MYC (ENSOCUG00000014289)	ENSOCUG00000000506	ENSOCUG00000025215	ENSOCUG00000038124	ENSOCUG00000024677 #22	ENSOCUG00000021577	ENSOCUG00000013690	ASAP1 (ENSOCUG00000002414)	ADCY8 (ENSOCUG00000002685)	ENSOCUG00000030310	ENSOCUG00000039078	ENSOCUG00000023866	ENSOCUG00000032952	EFR3A (ENSOCUG00000009294)	OC90 (ENSOCUG00000012033)	KCNQ3 (ENSOCUG00000012036)	ENSOCUG00000034102	DNAAF11 (ENSOCUG00000009754)	TMEM71 (ENSOCUG00000009761)	PHF20L1 (ENSOCUG00000009768)
Laurasiatheria	ANCESTRAL SPECIES	12	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147620	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000165152	ENSGT00390000006925 #35
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000155065 #22
Common shrew	MODERN SPECIES	1143																ACTR3 (ENSSARG00000009876) #22
Hedgehog	MODERN SPECIES	1678																ACTR3 (ENSEEUG00000015164) #22
Laurasiatheria_a	ANCESTRAL SPECIES	16	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147620	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000165152	ENSGT00390000006925 #35
Artiodactyla	ANCESTRAL SPECIES	13	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147620	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b.x #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000165152	ENSGT00390000006925 #35
Artiodactyla_a	ANCESTRAL SPECIES	13	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147620	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b.x #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000165152	ENSGT00390000006925 #35
Camelidae	ANCESTRAL SPECIES	16	ENSGT01050000244824.D.b	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT00500000045852	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b.x #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Arabian camel	MODERN SPECIES	31	R3HDM1 (ENSCDRG00005018316)	ENSCDRG00005018272	ZRANB3 (ENSCDRG00005018185)	RAB3GAP1 (ENSCDRG00005017183)	MAP3K19 (ENSCDRG00005016388)	CCNT2 (ENSCDRG00005016294)	ACMSD (ENSCDRG00005016206)	TMEM163 (ENSCDRG00005016133)	MGAT5 (ENSCDRG00005016077)	ENSCDRG00005016005	NCKAP5 (ENSCDRG00005015750)	LYPD1 (ENSCDRG00005015681)	ENSCDRG00005015665	ENSCDRG00005015625	SLC35F5 (ENSCDRG00005015269) #21	ACTR3 (ENSCDRG00005015049) #22	DPP10 (ENSCDRG00005014552) #23	DDX18 (ENSCDRG00005014417) #24	ENSCDRG00005014389	ENSCDRG00005014348	CCDC93 (ENSCDRG00005014090) #25	INSIG2 (ENSCDRG00005013996) #26	MARCO (ENSCDRG00005013731) #28	C1QL2 (ENSCDRG00005013691) #29	STEAP3 (ENSCDRG00005013627) #30	ENSCDRG00005013521 #31	ENSCDRG00005013176 #32	TMEM37 (ENSCDRG00005013093) #33	SCTR (ENSCDRG00005012956) #34	CFAP221 (ENSCDRG00005012865) #35	ENSCDRG00005012821 #36
Alpaca	MODERN SPECIES	3665															SLC35F5 (ENSVPAG00000009478) #21	ACTR3 (ENSVPAG00000009479) #22
Artiodactyla_b	ANCESTRAL SPECIES	12	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147620	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b.x #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000165152	ENSGT00390000006925 #35
Pecora	ANCESTRAL SPECIES	24	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00390000004945.j	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b.x #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000165152
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	19	ENSCHYG00000023275	SYT4 (ENSCHYG00000023253)	PIK3C3 (ENSCHYG00000022452)	CELF4 (ENSCHYG00000022121)	ENSCHYG00000022088	ENSCHYG00000022059	KIAA1328 (ENSCHYG00000021992)	TPGS2 (ENSCHYG00000021806)	FHOD3 (ENSCHYG00000020663)	MOCOS (ENSCHYG00000020478)	ELP2 (ENSCHYG00000019094)	SLC39A6 (ENSCHYG00000018931)	RPRD1A (ENSCHYG00000018735)	ENSCHYG00000018675	C18orf21 (ENSCHYG00000018586)	ENSCHYG00000018558 #22	ENSCHYG00000018508	GALNT1 (ENSCHYG00000018348)	INO80C (ENSCHYG00000018185)	ZNF24 (ENSCHYG00000018141)	ENSCHYG00000018124	ZNF397 (ENSCHYG00000018037)	ZSCAN30 (ENSCHYG00000017887)	ENSCHYG00000017843	MAPRE2 (ENSCHYG00000017572)	ENSCHYG00000017502	DTNA (ENSCHYG00000016221)	NOL4 (ENSCHYG00000015738)	ASXL3 (ENSCHYG00000015573)	CCDC178 (ENSCHYG00000014402)	KLHL14 (ENSCHYG00000014241)
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	26	ZRANB3 (ENSCHYG00000015153)	ENSCHYG00000015314	RAB3GAP1 (ENSCHYG00000015371)	ENSCHYG00000015893	MAP3K19 (ENSCHYG00000016167)	CCNT2 (ENSCHYG00000017100)	ACMSD (ENSCHYG00000017316)	TMEM163 (ENSCHYG00000017497)	MGAT5 (ENSCHYG00000017596)	ENSCHYG00000018252	NCKAP5 (ENSCHYG00000018364)	ENSCHYG00000018824	LYPD1 (ENSCHYG00000018957)	GPR39 (ENSCHYG00000019017)	SLC35F5 (ENSCHYG00000019102) #21	ENSCHYG00000019486 #22	DPP10 (ENSCHYG00000019654) #23	ENSCHYG00000020331	DDX18 (ENSCHYG00000020526) #24	ENSCHYG00000020836	CCDC93 (ENSCHYG00000020874) #25	ENSCHYG00000021196	INSIG2 (ENSCHYG00000021229) #26	EN1 (ENSCHYG00000021284) #27	MARCO (ENSCHYG00000021328) #28	C1QL2 (ENSCHYG00000021464) #29	ENSCHYG00000021492	STEAP3 (ENSCHYG00000021528) #30	C2orf76 (ENSCHYG00000021650) #31	ENSCHYG00000021738 #32	ENSCHYG00000021886 #33
Yarkand deer	MODERN SPECIES	29	YTHDC1 (ENSCHYG00000025605)	ENSCHYG00000025674	ENSCHYG00000025700	ENSCHYG00000000204	ENSCHYG00000000309	UGT2A2 (ENSCHYG00000000383)	SULT1B1 (ENSCHYG00000000442)	ENSCHYG00000000461	SULT1E1 (ENSCHYG00000000485)	ENSCHYG00000000529	CSN2 (ENSCHYG00000000592)	ODAM (ENSCHYG00000000613)	ENSCHYG00000000626	CABS1 (ENSCHYG00000000637)	ENSCHYG00000000640	ENSCHYG00000000649 #22	AMTN (ENSCHYG00000000661)	AMBN (ENSCHYG00000000691)	ENAM (ENSCHYG00000000740)	JCHAIN (ENSCHYG00000000764)	UTP3 (ENSCHYG00000000779)	RUFY3 (ENSCHYG00000000818)	GRSF1 (ENSCHYG00000000959)	MOB1B (ENSCHYG00000001010)	DCK (ENSCHYG00000001046)	SLC4A4 (ENSCHYG00000001138)	GC (ENSCHYG00000001315)	ENSCHYG00000001345	NPFFR2 (ENSCHYG00000001359)	ADAMTS3 (ENSCHYG00000001389)	COX18 (ENSCHYG00000001507)
Yarkand deer	MODERN SPECIES	5	ENSCHYG00000022214	ENSCHYG00000021642	CD34 (ENSCHYG00000021408)	PLXNA2 (ENSCHYG00000020834)	ENSCHYG00000020762	CAMK1G (ENSCHYG00000020591)	LAMB3 (ENSCHYG00000020408)	G0S2 (ENSCHYG00000020378)	HSD11B1 (ENSCHYG00000020326)	TRAF3IP3 (ENSCHYG00000019520)	C1orf74 (ENSCHYG00000019456)	IRF6 (ENSCHYG00000019355)	UTP25 (ENSCHYG00000019141)	SYT14 (ENSCHYG00000018953)	SERTAD4 (ENSCHYG00000018890)	ENSCHYG00000018823 #22	HHAT (ENSCHYG00000018477)	KCNH1 (ENSCHYG00000018244)	RCOR3 (ENSCHYG00000017267)	TRAF5 (ENSCHYG00000017106)	ENSCHYG00000017071	RD3 (ENSCHYG00000017041)	SLC30A1 (ENSCHYG00000017005)	ENSCHYG00000016984	NEK2 (ENSCHYG00000016778)	ENSCHYG00000016743	LPGAT1 (ENSCHYG00000016569)	INTS7 (ENSCHYG00000016045)	DTL (ENSCHYG00000015630)	PPP2R5A (ENSCHYG00000014835)	ENSCHYG00000014785
Yarkand deer	MODERN SPECIES	12	ENSCHYG00000020132	ENSCHYG00000020095	ENSCHYG00000020057	ENSCHYG00000019996	NDUFA10 (ENSCHYG00000019837)	HDAC4 (ENSCHYG00000019442)	TWIST2 (ENSCHYG00000019397)	ASB1 (ENSCHYG00000019175)	TRAF3IP1 (ENSCHYG00000018668)	PER2 (ENSCHYG00000018478)	HES6 (ENSCHYG00000018412)	ILKAP (ENSCHYG00000018073)	KLHL30 (ENSCHYG00000017904)	ESPNL (ENSCHYG00000017849)	SCLY (ENSCHYG00000017354)	ENSCHYG00000017305 #22	UBE2F (ENSCHYG00000016770)	RAMP1 (ENSCHYG00000016650)	RBM44 (ENSCHYG00000016388)	ENSCHYG00000016146	RAB17 (ENSCHYG00000015919)	PRLH (ENSCHYG00000015812)	MLPH (ENSCHYG00000015476)	COL6A3 (ENSCHYG00000014186)	ENSCHYG00000013906	ACKR3 (ENSCHYG00000013874)	IQCA1 (ENSCHYG00000013644)	ASB18 (ENSCHYG00000013467)	GBX2 (ENSCHYG00000013427)	AGAP1 (ENSCHYG00000011724)	SH3BP4 (ENSCHYG00000011561)
Percora_a	ANCESTRAL SPECIES	5	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00390000004945.j	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b.x #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000165152
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	347										MGAT5 (ENSMMSG00000022635)	NCKAP5 (ENSMMSG00000022679)	LYPD1 (ENSMMSG00000022743)	GPR39 (ENSMMSG00000022756)	ENSMMSG00000022768	SLC35F5 (ENSMMSG00000022784) #21	ACTR3 (ENSMMSG00000022842) #22	DPP10 (ENSMMSG00000022895) #23	ENSMMSG00000022975
Siberian musk deer	MODERN SPECIES	181										SNTG1 (ENSMMSG00000020088)	ENSMMSG00000019886	ST18 (ENSMMSG00000019802)	ALKAL1 (ENSMMSG00000019751)	RB1CC1 (ENSMMSG00000019672)	NPBWR1 (ENSMMSG00000019656)	ENSMMSG00000019617 #22	OPRK1 (ENSMMSG00000019585)	ATP6V1H (ENSMMSG00000019499)	RGS20 (ENSMMSG00000019413)	TCEA1 (ENSMMSG00000019249)	LYPLA1 (ENSMMSG00000019125)	ENSMMSG00000019067	SOX17 (ENSMMSG00000019055)	ENSMMSG00000019022	XKR4 (ENSMMSG00000018988)	TMEM68 (ENSMMSG00000018879)	TGS1 (ENSMMSG00000018818)	LYN (ENSMMSG00000018689)	ENSMMSG00000018541	MOS (ENSMMSG00000018521)	PLAG1 (ENSMMSG00000018496)
Siberian musk deer	MODERN SPECIES	348	ENSMMSG00000008556	ENSMMSG00000008573	ENSMMSG00000008590	CNTNAP5 (ENSMMSG00000008620)	ENSMMSG00000008783	ENSMMSG00000008835	ENSMMSG00000008864	GLS (ENSMMSG00000008990)	STAT1 (ENSMMSG00000009167)	STAT4 (ENSMMSG00000009440)	MYO1B (ENSMMSG00000009576)	NABP1 (ENSMMSG00000009814)	ENSMMSG00000009870	CAVIN2 (ENSMMSG00000009885)	TMEFF2 (ENSMMSG00000009914)	ENSMMSG00000009975 #22	ENSMMSG00000009998
Bovidae	ANCESTRAL SPECIES	8	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00390000004945.j	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b.x #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000165152
Bovinae	ANCESTRAL SPECIES	5	ENSGT01050000244824.D.b	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00390000004945.j	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00940000166097	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b.x #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34
American bison	DUPLICATION
American bison	MODERN SPECIES	3244	LCT (ENSBBBG00000012549)	UBXN4 (ENSBBBG00000012566)	R3HDM1 (ENSBBBG00000012694)	ZRANB3 (ENSBBBG00000012735)	RAB3GAP1 (ENSBBBG00000002477)	MAP3K19 (ENSBBBG00000002510)	CCNT2 (ENSBBBG00000001744)	ACMSD (ENSBBBG00000012859)	TMEM163 (ENSBBBG00000012878)	MGAT5 (ENSBBBG00000012893)	NCKAP5 (ENSBBBG00000012933)	LYPD1 (ENSBBBG00000012944)	ENSBBBG00000002561	ENSBBBG00000012949	SLC35F5 (ENSBBBG00000002588) #21	ACTR3 (ENSBBBG00000013025) #22
American bison	MODERN SPECIES	3239																ENSBBBG00000018182 #22	BRINP3 (ENSBBBG00000018191)	KCTD3 (ENSBBBG00000018232)	USH2A (ENSBBBG00000018368)	ESRRG (ENSBBBG00000018454)	GPATCH2 (ENSBBBG00000018481)	SPATA17 (ENSBBBG00000004546)	RRP15 (ENSBBBG00000018498)	TGFB2 (ENSBBBG00000007667)	ENSBBBG00000018524	LYPLAL1 (ENSBBBG00000018529)	SLC30A10 (ENSBBBG00000007438)	EPRS1 (ENSBBBG00000018572)	BPNT1 (ENSBBBG00000018637)	IARS2 (ENSBBBG00000018668)	RAB3GAP2 (ENSBBBG00000018706)
Bos	ANCESTRAL SPECIES	6	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT01100000263481.n.a.b.b.b.b	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00390000004945.j	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00510000046985.h.a.jd.k.a	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00940000166097	ENSGT00390000008042.A.b #30	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.a.b.b.a.a.a.b.b.b.a.a.a.a.a.b.a.a.b	ENSGT00390000015352 #31	ENSGT00940000154846.b.x #32
Bos_a	ANCESTRAL SPECIES	4	ENSGT00940000156095	ENSGT00940000158559	ENSGT01100000263481.n.a.b.b.b.b	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT01100000263480.a.a.b.b.b.a.a.a.b.a.a.b.b.a.a.b.b.a.b.a	ENSGT01100000263480.a.a.b.a.b.b.b.a.a.a.a.b	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00390000004945.j	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00510000046985.h.a.jd.k.a	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.a.b.b.a.a.a.b.b.b.a.a.a.a.a.b.a.a.b	ENSGT00390000015352 #31	ENSGT00940000154846.b.x.d #32	ENSGT00390000006225 #33
Wild yak	MODERN SPECIES	956											NCKAP5 (ENSBMUG00000004834)	LYPD1 (ENSBMUG00000004654)	ENSBMUG00000004642	ENSBMUG00000004628	SLC35F5 (ENSBMUG00000004621) #21	ACTR3 (ENSBMUG00000004569) #22	ENSBMUG00000004553	DPP10 (ENSBMUG00000004507) #23
Domestic yak	MODERN SPECIES	11	MAP3K19 (ENSBGRG00000000787)	CCNT2 (ENSBGRG00000000712)	ACMSD (ENSBGRG00000000653)	TMEM163 (ENSBGRG00000000610)	MGAT5 (ENSBGRG00000000528)	ENSBGRG00000000496	ENSBGRG00000000489	ENSBGRG00000000483	ENSBGRG00000000477	NCKAP5 (ENSBGRG00000000305)	ENSBGRG00000000269	LYPD1 (ENSBGRG00000000260)	ENSBGRG00000000241	SLC35F5 (ENSBGRG00000000225) #21	ENSBGRG00000000199	ACTR3 (ENSBGRG00000003534) #22	ENSBGRG00000003490	DPP10 (ENSBGRG00000003420) #23	DDX18 (ENSBGRG00000003383) #24	ENSBGRG00000003364	CCDC93 (ENSBGRG00000003157) #25	INSIG2 (ENSBGRG00000003131) #26	ENSBGRG00000003126	EN1 (ENSBGRG00000003115) #27	MARCO (ENSBGRG00000003091) #28	C1QL2 (ENSBGRG00000003071) #29	STEAP3 (ENSBGRG00000003034) #30	ENSBGRG00000003020	C2orf76 (ENSBGRG00000002982) #31	ENSBGRG00000002927 #32	TMEM37 (ENSBGRG00000002915) #33
Bos_b	ANCESTRAL SPECIES	3	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT01100000263481.n.a.b.b.b.b	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00510000046985.h.a.jd.k.a	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00940000166097	ENSGT00390000008042.A.b #30	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.a.b.b.a.a.a.b.b.b.a.a.a.a.a.b.a.a.b	ENSGT00390000015352 #31	ENSGT00940000154846.b.x #32	ENSGT00390000006225 #33
Hybrid Bos Indicus	MODERN SPECIES	11	ENSBIXG00005014335	MAP3K19 (ENSBIXG00005014314)	CCNT2 (ENSBIXG00005014240)	ACMSD (ENSBIXG00005014175)	TMEM163 (ENSBIXG00005001832)	MGAT5 (ENSBIXG00005014057)	ENSBIXG00005014012	ENSBIXG00005013944	NCKAP5 (ENSBIXG00005013828)	ENSBIXG00005013529	ENSBIXG00005001628	ENSBIXG00005001622	ENSBIXG00005013476	SLC35F5 (ENSBIXG00005013442) #21	ENSBIXG00005013364	ACTR3 (ENSBIXG00005013355) #22	DPP10 (ENSBIXG00005001530) #23	ENSBIXG00005013117	DDX18 (ENSBIXG00005013068) #24	ENSBIXG00005013035	CCDC93 (ENSBIXG00005013009) #25	INSIG2 (ENSBIXG00005012960) #26	ENSBIXG00005012923	EN1 (ENSBIXG00005012883) #27	ENSBIXG00005001431 #28	C1QL2 (ENSBIXG00005012834) #29	ENSBIXG00005012819	STEAP3 (ENSBIXG00005012793) #30	ENSBIXG00005012698	C2orf76 (ENSBIXG00005012681) #31	ENSBIXG00005012649
Cow	MODERN SPECIES	11	LCT (ENSBTAG00000015170)	UBXN4 (ENSBTAG00000015169)	R3HDM1 (ENSBTAG00000013302)	ZRANB3 (ENSBTAG00000026842)	ENSBTAG00000050570	RAB3GAP1 (ENSBTAG00000013449)	MAP3K19 (ENSBTAG00000014409)	CCNT2 (ENSBTAG00000014158)	ACMSD (ENSBTAG00000008039)	TMEM163 (ENSBTAG00000018753)	MGAT5 (ENSBTAG00000018744)	NCKAP5 (ENSBTAG00000005238)	LYPD1 (ENSBTAG00000005234)	GPR39 (ENSBTAG00000047036)	SLC35F5 (ENSBTAG00000021103) #21	ACTR3 (ENSBTAG00000003401) #22	DPP10 (ENSBTAG00000005235) #23	ENSBTAG00000015077 #24	ENSBTAG00000016785	CCDC93 (ENSBTAG00000010221) #25	INSIG2 (ENSBTAG00000002112) #26	ENSBTAG00000050695	EN1 (ENSBTAG00000021494) #27	MARCO (ENSBTAG00000018473) #28	C1QL2 (ENSBTAG00000003771) #29	STEAP3 (ENSBTAG00000007111) #30	C2H2orf76 (ENSBTAG00000010599) #31	DBI (ENSBTAG00000009517) #32	TMEM37 (ENSBTAG00000026825) #33	SCTR (ENSBTAG00000013619) #34	ENSBTAG00000054356
Caprinae	ANCESTRAL SPECIES	5	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b.x #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Rambouillet Sheep	MODERN SPECIES	11	MCM6 (ENSOARG00020012369)	LCT (ENSOARG00020012566)	R3HDM1 (ENSOARG00020012873)	ZRANB3 (ENSOARG00020015121)	RAB3GAP1 (ENSOARG00020015640)	ENSOARG00020016565	CCNT2 (ENSOARG00020017712)	ACMSD (ENSOARG00020017792)	ENSOARG00020017892	TMEM163 (ENSOARG00020017931)	MGAT5 (ENSOARG00020018034)	LYPD1 (ENSOARG00020019803)	ENSOARG00020019827	ENSOARG00020019862	SLC35F5 (ENSOARG00020019975) #21	ACTR3 (ENSOARG00020020404) #22	DPP10 (ENSOARG00020020607) #23	ENSOARG00020022402	DDX18 (ENSOARG00020022459) #24	ENSOARG00020022526	CCDC93 (ENSOARG00020022566) #25	Insig2 (ENSOARG00020022883) #26	EN1 (ENSOARG00020022915) #27	C1QL2 (ENSOARG00020022941) #29	STEAP3 (ENSOARG00020022977) #30	C2orf76 (ENSOARG00020023056) #31	DBI (ENSOARG00020023089) #32	TMEM37 (ENSOARG00020023172) #33	SCTR (ENSOARG00020023191) #34	CFAP221 (ENSOARG00020023250) #35	TMEM177 (ENSOARG00020023343) #36
Goat	DUPLICATION
Goat	MODERN SPECIES	11	ENSCHIG00000009928	RAB3GAP1 (ENSCHIG00000005692)	MAP3K19 (ENSCHIG00000015546)	CCNT2 (ENSCHIG00000016658)	ACMSD (ENSCHIG00000019884)	ENSCHIG00000009827	ENSCHIG00000013148	TMEM163 (ENSCHIG00000025354)	MGAT5 (ENSCHIG00000027215)	NCKAP5 (ENSCHIG00000026101)	LYPD1 (ENSCHIG00000019109)	ENSCHIG00000015349	GPR39 (ENSCHIG00000019970)	ENSCHIG00000026091	SLC35F5 (ENSCHIG00000013570) #21	ACTR3 (ENSCHIG00000015777) #22	DPP10 (ENSCHIG00000022323) #23	DDX18 (ENSCHIG00000019280) #24	ENSCHIG00000019661	CCDC93 (ENSCHIG00000013749) #25	INSIG2 (ENSCHIG00000017903) #26	ENSCHIG00000005523	ENSCHIG00000021503	EN1 (ENSCHIG00000017355) #27	ENSCHIG00000024655 #28	C1QL2 (ENSCHIG00000018522) #29	ENSCHIG00000010820	STEAP3 (ENSCHIG00000020375) #30	C2orf76 (ENSCHIG00000017290) #31	DBI (ENSCHIG00000015289) #32	TMEM37 (ENSCHIG00000008579) #33
Goat	MODERN SPECIES	41															DHRSX (ENSCHIG00000016682)	ENSCHIG00000005188 #22	ASMT (ENSCHIG00000006740)	AKAP17A (ENSCHIG00000000435)	P2RY8 (ENSCHIG00000019823)	ASMTL (ENSCHIG00000000269)
Cetacea	DUPLICATION
Cetacea	DUPLICATION
Cetacea	ANCESTRAL SPECIES																	ENSGT00940000155065.lb.a #22
Odontoceti	ANCESTRAL SPECIES																	ENSGT00940000155065.lb.a #22
Odontoceti_a	ANCESTRAL SPECIES																	ENSGT00940000155065.lb.a #22
Odontoceti_b	ANCESTRAL SPECIES																	ENSGT00940000155065.lb.a #22
Vaquita	MODERN SPECIES	15	DVL3 (ENSPSNG00000002831)	EIF2B5 (ENSPSNG00000002757)	ENSPSNG00000002695	ENSPSNG00000002642	ABCC5 (ENSPSNG00000002555)	PARL (ENSPSNG00000002457)	MAP6D1 (ENSPSNG00000002417)	YEATS2 (ENSPSNG00000002390)	KLHL24 (ENSPSNG00000002350)	KLHL6 (ENSPSNG00000002317)	ENSPSNG00000002280	B3GNT5 (ENSPSNG00000002266)	MCF2L2 (ENSPSNG00000002227)	LAMP3 (ENSPSNG00000002153)	MCCC1 (ENSPSNG00000002070)	ENSPSNG00000002025 #22	ENSPSNG00000002009	DCUN1D1 (ENSPSNG00000001998)	ENSPSNG00000001973	ENSPSNG00000001934	ENSPSNG00000001911	ENSPSNG00000001895	ENSPSNG00000001868	SOX2 (ENSPSNG00000001850)	ENSPSNG00000001824	FXR1 (ENSPSNG00000001732)	ENSPSNG00000001620	CCDC39 (ENSPSNG00000001552)	TTC14 (ENSPSNG00000001461)	ENSPSNG00000001427	PEX5L (ENSPSNG00000000991)
Monodontidae	ANCESTRAL SPECIES																	ENSGT00940000155065.lb.a #22
Narwhal	MODERN SPECIES	297	AP2M1 (ENSMMNG00015004290)	DVL3 (ENSMMNG00015004323)	EIF2B5 (ENSMMNG00015004352)	ENSMMNG00015004360	ENSMMNG00015004381	ABCC5 (ENSMMNG00015004426)	PARL (ENSMMNG00015004493)	MAP6D1 (ENSMMNG00015004521)	YEATS2 (ENSMMNG00015000154)	ENSMMNG00015000255	KLHL6 (ENSMMNG00015000283)	MCF2L2 (ENSMMNG00015000373)	B3GNT5 (ENSMMNG00015000474)	ENSMMNG00015000494	MCCC1 (ENSMMNG00015000549)	ENSMMNG00015000610 #22	DCUN1D1 (ENSMMNG00015000639)	ENSMMNG00015000676	ATP11B (ENSMMNG00015000694)	ENSMMNG00015000768	SOX2 (ENSMMNG00015000779)	ENSMMNG00015000787	ENSMMNG00015000810	FXR1 (ENSMMNG00015000882)	CCDC39 (ENSMMNG00015001064)	TTC14 (ENSMMNG00015001171)	PEX5L (ENSMMNG00015001374)	USP13 (ENSMMNG00015001699)	ENSMMNG00015001756	MRPL47 (ENSMMNG00015001795)	ACTL6A (ENSMMNG00015001826)
Cetacea	ANCESTRAL SPECIES	13	ENSGT00950000183019.e	ENSGT00940000162156	ENSGT00940000158227	ENSGT00940000155281	ENSGT00390000020445	ENSGT00940000158304	ENSGT00940000156280	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a ##26	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00940000155065.lb.b #22	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h	ENSGT00940000154095.b.a	ENSGT00490000043432	ENSGT00940000156086	ENSGT00390000013743	ENSGT00940000158089
Odontoceti	ANCESTRAL SPECIES	12	ENSGT00950000183019.e	ENSGT00940000162156	ENSGT00940000158227	ENSGT00940000155281	ENSGT00390000020445	ENSGT00940000158304	ENSGT00940000156280	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a ##26	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00940000155065.lb.b #22	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h	ENSGT00940000154095.b.a	ENSGT00490000043432	ENSGT00940000156086	ENSGT00390000013743	ENSGT00940000158089
Odontoceti_a	ANCESTRAL SPECIES	32	ENSGT00950000183019.e	ENSGT00940000162156.c	ENSGT00940000158227	ENSGT00940000155281	ENSGT00390000020445	ENSGT00940000158304	ENSGT00940000156280	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a ##26	ENSGT00940000159935	ENSGT00940000161119.g	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00940000155065.lb.b #22	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h	ENSGT00940000154095.b.a	ENSGT00490000043432	ENSGT00940000156086	ENSGT00390000013743	ENSGT00940000158089
Odontoceti_b	ANCESTRAL SPECIES	13	ENSGT00940000162156.c	ENSGT00940000158227	ENSGT00950000182891.a.a.b.a.b.a.h.a	ENSGT00940000155281	ENSGT00390000020445	ENSGT00940000158304	ENSGT00940000156280	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a ##26	ENSGT00940000159935	ENSGT00940000161119.g	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00940000155065.lb.b #22	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h	ENSGT00940000154095.b.a	ENSGT00490000043432	ENSGT00940000156086	ENSGT00390000013743	ENSGT00940000158089
Monodontidae	ANCESTRAL SPECIES	12	ENSGT00940000158227	ENSGT00950000182891.a.a.b.a.b.a.h.a	ENSGT00940000155281	ENSGT00390000001347.v.n.a	ENSGT00390000020445	ENSGT00940000158304	ENSGT00940000156280	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a ##26	ENSGT00940000159935	ENSGT00940000161119.g	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00940000155065.lb.b #22	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h	ENSGT00940000154095.b.a	ENSGT00490000043432	ENSGT00940000156086	ENSGT00390000013743	ENSGT00940000158089
Narwhal	MODERN SPECIES	306	KMT2C (ENSMMNG00015011514)	ENSMMNG00015011602	ENSMMNG00015011618	XRCC2 (ENSMMNG00015011631)	ENSMMNG00015011641	ENSMMNG00015011677	VPS26A (ENSMMNG00015011731)	DPP6 (ENSMMNG00015011821)	PAXIP1 (ENSMMNG00015012048)	ENSMMNG00015012070	HTR5A (ENSMMNG00015012085)	INSIG1 (ENSMMNG00015012094) ##26	EN2 (ENSMMNG00015012105)	ENSMMNG00015012121	RBM33 (ENSMMNG00015012160)	ENSMMNG00015012215 #22	ENSMMNG00015012228	RNF32 (ENSMMNG00015012241)	LMBR1 (ENSMMNG00015012265)	NOM1 (ENSMMNG00015012290)	MNX1 (ENSMMNG00015012314)	UBE3C (ENSMMNG00015012356)	DNAJB6 (ENSMMNG00015012425)	PTPRN2 (ENSMMNG00015012538)	ENSMMNG00015012714	NCAPG2 (ENSMMNG00015012729)	ESYT2 (ENSMMNG00015012779)	DYNC2I1 (ENSMMNG00015012847)	VIPR2 (ENSMMNG00015012899)
Beluga whale	MODERN SPECIES	72	ENSDLEG00000016412	KMT2C (ENSDLEG00000015997)	ENSDLEG00000015939	XRCC2 (ENSDLEG00000015930)	ACTR3B (ENSDLEG00000015872)	VPS26A (ENSDLEG00000015854)	DPP6 (ENSDLEG00000015018)	PAXIP1 (ENSDLEG00000014965)	HTR5A (ENSDLEG00000014954)	ENSDLEG00000014937 ##26	EN2 (ENSDLEG00000014927)	CNPY1 (ENSDLEG00000014918)	ENSDLEG00000014861	ENSDLEG00000014850	SHH (ENSDLEG00000014841)	ENSDLEG00000014824 #22	RNF32 (ENSDLEG00000014766)	LMBR1 (ENSDLEG00000014735)	NOM1 (ENSDLEG00000014714)	MNX1 (ENSDLEG00000014696)	UBE3C (ENSDLEG00000014653)	DNAJB6 (ENSDLEG00000014560)	PTPRN2 (ENSDLEG00000014373)	NCAPG2 (ENSDLEG00000014297)	ESYT2 (ENSDLEG00000014159)	ENSDLEG00000014097	VIPR2 (ENSDLEG00000014065)
Vaquita	MODERN SPECIES	20	PRKAG2 (ENSPSNG00000004954)	GALNTL5 (ENSPSNG00000004886)	GALNT11 (ENSPSNG00000004845)	ENSPSNG00000004819	ENSPSNG00000004796	XRCC2 (ENSPSNG00000004702)	ENSPSNG00000004645	DPP6 (ENSPSNG00000004321)	PAXIP1 (ENSPSNG00000011584)	HTR5A (ENSPSNG00000011521)	INSIG1 (ENSPSNG00000011487) ##26	EN2 (ENSPSNG00000011442)	ENSPSNG00000011324	RBM33 (ENSPSNG00000011237)	SHH (ENSPSNG00000011156)	ENSPSNG00000011099 #22	RNF32 (ENSPSNG00000011036)	LMBR1 (ENSPSNG00000010950)	NOM1 (ENSPSNG00000010865)	MNX1 (ENSPSNG00000010812)	UBE3C (ENSPSNG00000010638)	DNAJB6 (ENSPSNG00000010380)	ENSPSNG00000010301	NCAPG2 (ENSPSNG00000010189)	ESYT2 (ENSPSNG00000009925)	DYNC2I1 (ENSPSNG00000009771)	VIPR2 (ENSPSNG00000009695)
Blue whale	MODERN SPECIES	20	ENSBMSG00010011949	KMT2C (ENSBMSG00010011885)	XRCC2 (ENSBMSG00010011849)	ENSBMSG00010011834	ENSBMSG00010011791	ENSBMSG00010011763	ENSBMSG00010011738	DPP6 (ENSBMSG00010011416)	PAXIP1 (ENSBMSG00010011138)	HTR5A (ENSBMSG00010011100)	INSIG1 (ENSBMSG00010011082) ##26	EN2 (ENSBMSG00010011067)	ENSBMSG00010011052	RBM33 (ENSBMSG00010011000)	SHH (ENSBMSG00010010970)	ENSBMSG00010010938 #22	RNF32 (ENSBMSG00010010901)	LMBR1 (ENSBMSG00010010821)	NOM1 (ENSBMSG00010010740)	MNX1 (ENSBMSG00010010704)	UBE3C (ENSBMSG00010010629)	DNAJB6 (ENSBMSG00010010588)	PTPRN2 (ENSBMSG00010010494)	NCAPG2 (ENSBMSG00010010412)	ESYT2 (ENSBMSG00010010175)	DYNC2I1 (ENSBMSG00010009991)	VIPR2 (ENSBMSG00010009918)
Cetacea	ANCESTRAL SPECIES	14	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147620	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000007776.d	ENSGT00390000005949 #21	ENSGT00940000155065.mb #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT01010000229817	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b.x #32	ENSGT00940000159158	ENSGT00940000154817.b.b.b	ENSGT00390000011515
Blue whale	MODERN SPECIES	18	ENSBMSG00010001212	R3HDM1 (ENSBMSG00010001141)	ZRANB3 (ENSBMSG00010001026)	RAB3GAP1 (ENSBMSG00010000960)	ENSBMSG00010000873	CCNT2 (ENSBMSG00010000833)	ACMSD (ENSBMSG00010000783)	TMEM163 (ENSBMSG00010000754)	MGAT5 (ENSBMSG00010000719)	ENSBMSG00010000681	NCKAP5 (ENSBMSG00010000614)	LYPD1 (ENSBMSG00010000564)	GPR39 (ENSBMSG00010000548)	ENSBMSG00010000523	SLC35F5 (ENSBMSG00010000488) #21	ACTR3 (ENSBMSG00010000443) #22	DPP10 (ENSBMSG00010000227) #23	ENSBMSG00010000138	ENSBMSG00010000112 #24	ENSBMSG00010008969	CCDC93 (ENSBMSG00010008946) #25	INSIG2 (ENSBMSG00010008925) #26	EN1 (ENSBMSG00010008910) #27	MARCO (ENSBMSG00010008865) #28	C1QL2 (ENSBMSG00010008829) #29	STEAP3 (ENSBMSG00010008818) #30	C2orf76 (ENSBMSG00010008794) #31	ENSBMSG00010008755 #32	TFCP2L1 (ENSBMSG00010008719)	CLASP1 (ENSBMSG00010008661)	ENSBMSG00010008626
Odontoceti	ANCESTRAL SPECIES	13	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147620	ENSGT00940000153470.a.a.a.a	ENSGT00940000164579.f	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000007776.d	ENSGT00390000005949 #21	ENSGT00940000155065.mb #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT01010000229817	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b.x #32	ENSGT00940000159158	ENSGT00940000154817.b.b.b	ENSGT00390000011515
Odontoceti_a	ANCESTRAL SPECIES	10	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147620	ENSGT00940000153470.a.a.a.a	ENSGT00940000164579.f	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000007776.d	ENSGT00390000005949 #21	ENSGT00940000155065.mb #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000229817	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b.x #32	ENSGT00940000159158	ENSGT00940000154817.b.b.b	ENSGT00390000011515	ENSGT00940000153568.B
Dolphin	MODERN SPECIES	3534																ACTR3 (ENSTTRG00000002901) #22
Odontoceti_b	ANCESTRAL SPECIES	12	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147620	ENSGT00940000153470.a.a.a.a	ENSGT00390000011085.sb.a.a.a	ENSGT00940000164579.f	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000007776.d	ENSGT00390000005949 #21	ENSGT00940000155065.mb #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000229817	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b.x #32	ENSGT00940000159158	ENSGT00940000154817.b.b.b	ENSGT00390000011515	ENSGT00940000153568.B
Vaquita	MODERN SPECIES	18	R3HDM1 (ENSPSNG00000015949)	ZRANB3 (ENSPSNG00000016864)	RAB3GAP1 (ENSPSNG00000017295)	CCNT2 (ENSPSNG00000017589)	ACMSD (ENSPSNG00000017684)	TMEM163 (ENSPSNG00000017853)	ENSPSNG00000017945	MGAT5 (ENSPSNG00000017999)	ENSPSNG00000018042	ENSPSNG00000018068	NCKAP5 (ENSPSNG00000018140)	ENSPSNG00000018466	LYPD1 (ENSPSNG00000018523)	GPR39 (ENSPSNG00000018589)	SLC35F5 (ENSPSNG00000018619) #21	ACTR3 (ENSPSNG00000018767) #22	DPP10 (ENSPSNG00000018963) #23	DDX18 (ENSPSNG00000019409) #24	CCDC93 (ENSPSNG00000019464) #25	INSIG2 (ENSPSNG00000019505) #26	EN1 (ENSPSNG00000019538) #27	MARCO (ENSPSNG00000019604) #28	C1QL2 (ENSPSNG00000019823) #29	STEAP3 (ENSPSNG00000019857) #30	C2orf76 (ENSPSNG00000019896) #31	DBI (ENSPSNG00000019962) #32	ENSPSNG00000020099	TFCP2L1 (ENSPSNG00000020132)	CLASP1 (ENSPSNG00000020303)	NIFK (ENSPSNG00000020550)	TSN (ENSPSNG00000020598)
Monodontidae	ANCESTRAL SPECIES	10	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00390000011085.sb.a.a.a	ENSGT00940000164579.f	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000007776.d	ENSGT00390000005949 #21	ENSGT00940000155065.mb #22	ENSGT00940000154657.D #23	ENSGT00950000183010.a.a.a.b.a.a.a.a.b	ENSGT00680000100037 #24	ENSGT01010000229817	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b.x #32	ENSGT00940000159158	ENSGT00940000154817.b.b.b	ENSGT00390000011515
Narwhal	MODERN SPECIES	302	ZRANB3 (ENSMMNG00015006291)	ENSMMNG00015006347	RAB3GAP1 (ENSMMNG00015006395)	CCNT2 (ENSMMNG00015006480)	ACMSD (ENSMMNG00015006514)	TMEM163 (ENSMMNG00015006547)	MGAT5 (ENSMMNG00015006577)	ENSMMNG00015006617	ENSMMNG00015006627	ENSMMNG00015006640	NCKAP5 (ENSMMNG00015006713)	ENSMMNG00015006851	LYPD1 (ENSMMNG00015006865)	GPR39 (ENSMMNG00015006884)	SLC35F5 (ENSMMNG00015006913) #21	ACTR3 (ENSMMNG00015006959) #22	DPP10 (ENSMMNG00015007053) #23	ENSMMNG00015007279	DDX18 (ENSMMNG00015007294) #24	ENSMMNG00015007310	CCDC93 (ENSMMNG00015007324) #25	INSIG2 (ENSMMNG00015007370) #26	EN1 (ENSMMNG00015007385) #27	MARCO (ENSMMNG00015007408) #28	C1QL2 (ENSMMNG00015007435) #29	STEAP3 (ENSMMNG00015007462) #30	C2orf76 (ENSMMNG00015007492) #31	DBI (ENSMMNG00015007543) #32	TFCP2L1 (ENSMMNG00015007621)	CLASP1 (ENSMMNG00015007757)	NIFK (ENSMMNG00015007818)
Beluga whale	DUPLICATION
Beluga whale	MODERN SPECIES	5					ENSDLEG00000016891	ENSDLEG00000016879	ENSDLEG00000016860	ENSDLEG00000016849	ENSDLEG00000016835	NCKAP5 (ENSDLEG00000016766)	ENSDLEG00000016753	ENSDLEG00000016742	GPR39 (ENSDLEG00000016739)	ENSDLEG00000016727	SLC35F5 (ENSDLEG00000016710) #21	ACTR3 (ENSDLEG00000016689) #22	DPP10 (ENSDLEG00000016504) #23	ENSDLEG00000016473	DDX18 (ENSDLEG00000016447) #24	CCDC93 (ENSDLEG00000016397) #25	INSIG2 (ENSDLEG00000016370) #26	EN1 (ENSDLEG00000016364) #27	MARCO (ENSDLEG00000016344) #28	C1QL2 (ENSDLEG00000016331) #29	STEAP3 (ENSDLEG00000016318) #30	C2orf76 (ENSDLEG00000016309) #31	DBI (ENSDLEG00000016300) #32	ENSDLEG00000016288	TFCP2L1 (ENSDLEG00000016257)	CLASP1 (ENSDLEG00000015964)	NIFK (ENSDLEG00000015915)
Beluga whale	MODERN SPECIES	111	DVL3 (ENSDLEG00000010211)	ENSDLEG00000010244	EIF2B5 (ENSDLEG00000010324)	ENSDLEG00000011105	ABCC5 (ENSDLEG00000011158)	ENSDLEG00000011228	PARL (ENSDLEG00000011263)	MAP6D1 (ENSDLEG00000011273)	YEATS2 (ENSDLEG00000011294)	KLHL24 (ENSDLEG00000011392)	KLHL6 (ENSDLEG00000011412)	LAMP3 (ENSDLEG00000011466)	B3GNT5 (ENSDLEG00000011651)	MCCC1 (ENSDLEG00000011656)	ENSDLEG00000011678	ENSDLEG00000011686 #22	DCUN1D1 (ENSDLEG00000011699)	ENSDLEG00000011713	ATP11B (ENSDLEG00000011729)	ENSDLEG00000011867	SOX2 (ENSDLEG00000011877)	ENSDLEG00000011882	ENSDLEG00000011911	FXR1 (ENSDLEG00000011932)	ENSDLEG00000011974	CCDC39 (ENSDLEG00000011994)	TTC14 (ENSDLEG00000012062)	PEX5L (ENSDLEG00000012327)	USP13 (ENSDLEG00000014351)	ENSDLEG00000014388	MRPL47 (ENSDLEG00000014407)
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	19	ENSPCTG00005002312	ENSPCTG00005002320	ENSPCTG00005002325	ENSPCTG00005002334	KRTAP15-1 (ENSPCTG00005002379)	KRTAP19-2 (ENSPCTG00005002385)	KRTAP19-5 (ENSPCTG00005002391)	ENSPCTG00005002396	KRTAP19-6 (ENSPCTG00005002408)	KRTAP19-7 (ENSPCTG00005002417)	KRTAP21-1 (ENSPCTG00005002461)	ENSPCTG00005002470	ENSPCTG00005002481	KRTAP8-1 (ENSPCTG00005002493)	TIAM1 (ENSPCTG00005002554)	ENSPCTG00005002633 #22	ENSPCTG00005002649	SOD1 (ENSPCTG00005002658)	SCAF4 (ENSPCTG00005002739)	HUNK (ENSPCTG00005002812)	MIS18A (ENSPCTG00005002827)	ENSPCTG00005002863	EVA1C (ENSPCTG00005002920)	CFAP298 (ENSPCTG00005002934)	SYNJ1 (ENSPCTG00005003044)	PAXBP1 (ENSPCTG00005003338)	C8H21orf62 (ENSPCTG00005003354)	OLIG2 (ENSPCTG00005003364)	OLIG1 (ENSPCTG00005003370)	ENSPCTG00005003381	IFNAR2 (ENSPCTG00005003398)
Sperm whale	MODERN SPECIES	11	TMEM259 (ENSPCTG00005021523)	GRIN3B (ENSPCTG00005021545)	ENSPCTG00005021571	C2CD4C (ENSPCTG00005021579)	THEG (ENSPCTG00005021591)	MIER2 (ENSPCTG00005021624)	PLPP2 (ENSPCTG00005021677)	ENSPCTG00005000210	NCKAP5 (ENSPCTG00005000368)	ENSPCTG00005000450	LYPD1 (ENSPCTG00005000474)	GPR39 (ENSPCTG00005000485)	ENSPCTG00005000496	ENSPCTG00005000510	SLC35F5 (ENSPCTG00005000532) #21	ACTR3 (ENSPCTG00005000631) #22	DPP10 (ENSPCTG00005000715) #23	ENSPCTG00005000885	DDX18 (ENSPCTG00005000893) #24	ENSPCTG00005000904	INSIG2 (ENSPCTG00005000920) #26	ENSPCTG00005000944 #28	C1QL2 (ENSPCTG00005000985) #29	C2H2orf76 (ENSPCTG00005001002) #31	DBI (ENSPCTG00005001026) #32	ENSPCTG00005001064	TFCP2L1 (ENSPCTG00005001081)	CLASP1 (ENSPCTG00005001140)	NIFK (ENSPCTG00005001216)	TSN (ENSPCTG00005001244)	ENSPCTG00005001269
Sperm whale	MODERN SPECIES	16	GALNTL5 (ENSPCTG00005009865)	GALNT11 (ENSPCTG00005009799)	ENSPCTG00005009773	KMT2C (ENSPCTG00005008586)	XRCC2 (ENSPCTG00005008485)	ACTR3B (ENSPCTG00005008420)	ENSPCTG00005008391	DPP6 (ENSPCTG00005007889)	PAXIP1 (ENSPCTG00005007795)	HTR5A (ENSPCTG00005007776)	INSIG1 (ENSPCTG00005007737) ##26	EN2 (ENSPCTG00005007717)	ENSPCTG00005007688	RBM33 (ENSPCTG00005007636)	SHH (ENSPCTG00005007615)	ENSPCTG00005007606 #22	RNF32 (ENSPCTG00005007584)	LMBR1 (ENSPCTG00005007391)	NOM1 (ENSPCTG00005007325)	MNX1 (ENSPCTG00005007274)	UBE3C (ENSPCTG00005007142)	DNAJB6 (ENSPCTG00005007022)	PTPRN2 (ENSPCTG00005005949)	NCAPG2 (ENSPCTG00005005729)	ESYT2 (ENSPCTG00005005520)	DYNC2I1 (ENSPCTG00005005483)	ENSPCTG00005005469	VIPR2 (ENSPCTG00005020664)
Suina	ANCESTRAL SPECIES	48	ENSGT00940000155324	ENSGT00940000170936	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b.w.b #32	ENSGT00390000006225.b #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Chacoan peccary	MODERN SPECIES	130	ENSCWAG00000019832	R3HDM1 (ENSCWAG00000019873)	ZRANB3 (ENSCWAG00000020165)	ENSCWAG00000020208	RAB3GAP1 (ENSCWAG00000020244)	MAP3K19 (ENSCWAG00000020492)	CCNT2 (ENSCWAG00000020610)	ACMSD (ENSCWAG00000020650)	TMEM163 (ENSCWAG00000020690)	ENSCWAG00000020698	MGAT5 (ENSCWAG00000020711)	NCKAP5 (ENSCWAG00000020738)	LYPD1 (ENSCWAG00000020808)	GPR39 (ENSCWAG00000020819)	SLC35F5 (ENSCWAG00000020838) #21	ACTR3 (ENSCWAG00000020907) #22	DPP10 (ENSCWAG00000020970) #23	DDX18 (ENSCWAG00000021070) #24	ENSCWAG00000021086	CCDC93 (ENSCWAG00000021093) #25	INSIG2 (ENSCWAG00000021121) #26	EN1 (ENSCWAG00000021129) #27	C1QL2 (ENSCWAG00000021139) #29	STEAP3 (ENSCWAG00000021144) #30	C2orf76 (ENSCWAG00000021154) #31	ENSCWAG00000021157	ENSCWAG00000021169 #32	ENSCWAG00000021188 #33	SCTR (ENSCWAG00000021195) #34	CFAP221 (ENSCWAG00000021212) #35	TMEM177 (ENSCWAG00000021241) #36
Pig	MODERN SPECIES	6	MAP3K19 (ENSSSCG00000015696)	CCNT2 (ENSSSCG00000015697)	ACMSD (ENSSSCG00000015699)	ENSSSCG00000045091	TMEM163 (ENSSSCG00000015700)	MGAT5 (ENSSSCG00000015701)	ENSSSCG00000051912	NCKAP5 (ENSSSCG00000023479)	ENSSSCG00000051377	ENSSSCG00000052349	LYPD1 (ENSSSCG00000035102)	GPR39 (ENSSSCG00000015707)	ENSSSCG00000043652	ENSSSCG00000015708	SLC35F5 (ENSSSCG00000015709) #21	ACTR3 (ENSSSCG00000015710) #22	DPP10 (ENSSSCG00000015711) #23	ENSSSCG00000040343	ENSSSCG00000051241	DDX18 (ENSSSCG00000015712) #24	ENSSSCG00000015713	CCDC93 (ENSSSCG00000015714) #25	INSIG2 (ENSSSCG00000036229) #26	EN1 (ENSSSCG00000015715) #27	MARCO (ENSSSCG00000015716) #28	C1QL2 (ENSSSCG00000015717) #29	ENSSSCG00000031239	STEAP3 (ENSSSCG00000029304) #30	C2orf76 (ENSSSCG00000015718) #31	DBI (ENSSSCG00000032213) #32	ENSSSCG00000055602
Laurasiatheria_b	ANCESTRAL SPECIES	16	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT00940000164988	ENSGT00500000045852	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34
Laurasiatheria_c	ANCESTRAL SPECIES	18	ENSGT01050000244824.D.b	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT00940000164988	ENSGT00500000045852	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34
Equus	ANCESTRAL SPECIES	18	ENSGT00390000000805.h	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT00500000045852	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35
Donkey	MODERN SPECIES	24	LCT (ENSEASG00005007363)	UBXN4 (ENSEASG00005007369)	R3HDM1 (ENSEASG00005007392)	ZRANB3 (ENSEASG00005007414)	ENSEASG00005007411	RAB3GAP1 (ENSEASG00005007419)	MAP3K19 (ENSEASG00005007431)	CCNT2 (ENSEASG00005007433)	ACMSD (ENSEASG00005007438)	TMEM163 (ENSEASG00005007445)	MGAT5 (ENSEASG00005007448)	NCKAP5 (ENSEASG00005007468)	ENSEASG00005007486	ENSEASG00005026537	ENSEASG00005007490 #21	ENSEASG00005007495 #22	DPP10 (ENSEASG00005002144) #23	ENSEASG00005025997	ENSEASG00005002149	DDX18 (ENSEASG00005035983) #24	ENSEASG00005029911	ENSEASG00005034600	CCDC93 (ENSEASG00005031718) #25	INSIG2 (ENSEASG00005003537) #26	EN1 (ENSEASG00005023738) #27	MARCO (ENSEASG00005003544) #28	C1QL2 (ENSEASG00005003554) #29	STEAP3 (ENSEASG00005003559) #30	C2orf76 (ENSEASG00005003565) #31	ENSEASG00005026046 #32	ENSEASG00005038352
Horse	MODERN SPECIES	9	LCT (ENSECAG00000018594)	UBXN4 (ENSECAG00000008941)	R3HDM1 (ENSECAG00000019114)	ZRANB3 (ENSECAG00000011232)	ENSECAG00000057824	RAB3GAP1 (ENSECAG00000012270)	MAP3K19 (ENSECAG00000009919)	CCNT2 (ENSECAG00000022763)	ACMSD (ENSECAG00000017797)	TMEM163 (ENSECAG00000017568)	MGAT5 (ENSECAG00000019492)	NCKAP5 (ENSECAG00000017122)	LYPD1 (ENSECAG00000026896)	GPR39 (ENSECAG00000005577)	SLC35F5 (ENSECAG00000009292) #21	ACTR3 (ENSECAG00000020867) #22	DPP10 (ENSECAG00000000161) #23	ENSECAG00000053929	DDX18 (ENSECAG00000015740) #24	ENSECAG00000014433	ENSECAG00000052340	ENSECAG00000039697	ENSECAG00000028096	CCDC93 (ENSECAG00000011453) #25	INSIG2 (ENSECAG00000006707) #26	EN1 (ENSECAG00000000157) #27	MARCO (ENSECAG00000012151) #28	C1QL2 (ENSECAG00000030720) #29	STEAP3 (ENSECAG00000006470) #30	C18H2orf76 (ENSECAG00000002063) #31	DBI (ENSECAG00000018949) #32
Chiroptera	ANCESTRAL SPECIES	11	ENSGT01050000244824.D.b	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT00940000164988	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352.m #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Megabat	MODERN SPECIES	37																ACTR3 (ENSPVAG00000011094) #22
Microchiroptera	ANCESTRAL SPECIES	15	ENSGT01050000244824.D.b	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT00940000164988	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352.m #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Microbat	MODERN SPECIES	1053	ENSMLUG00000024185	ENSMLUG00000026430	ENSMLUG00000026384	ENSMLUG00000009452	ENSMLUG00000026334	ENSMLUG00000025576	ENSMLUG00000026538	ENSMLUG00000028602	ENSMLUG00000025589	ENSMLUG00000004575	LYPD1 (ENSMLUG00000004566)	ENSMLUG00000004563	ENSMLUG00000029455	SLC35F5 (ENSMLUG00000015813) #21	ENSMLUG00000023849	ACTR3 (ENSMLUG00000003895) #22
Greater horseshoe bat	MODERN SPECIES	26	ENSRFEG00010006221	LCT (ENSRFEG00010006250)	UBXN4 (ENSRFEG00010006282)	R3HDM1 (ENSRFEG00010006460)	ZRANB3 (ENSRFEG00010006895)	RAB3GAP1 (ENSRFEG00010007081)	MAP3K19 (ENSRFEG00010007402)	CCNT2 (ENSRFEG00010007854)	ACMSD (ENSRFEG00010007914)	TMEM163 (ENSRFEG00010008075)	MGAT5 (ENSRFEG00010008097)	NCKAP5 (ENSRFEG00010008169)	ENSRFEG00010008520	GPR39 (ENSRFEG00010008578)	SLC35F5 (ENSRFEG00010008610) #21	ACTR3 (ENSRFEG00010008856) #22	DPP10 (ENSRFEG00010008979) #23	ENSRFEG00010009464	DDX18 (ENSRFEG00010009499) #24	ENSRFEG00010009550	CCDC93 (ENSRFEG00010009589) #25	INSIG2 (ENSRFEG00010009692) #26	EN1 (ENSRFEG00010009720) #27	MARCO (ENSRFEG00010009759) #28	C1QL2 (ENSRFEG00010009811) #29	STEAP3 (ENSRFEG00010009849) #30	ENSRFEG00010009893 #31	DBI (ENSRFEG00010006803) #32	TMEM37 (ENSRFEG00010006908) #33	SCTR (ENSRFEG00010006931) #34	CFAP221 (ENSRFEG00010007006) #35
Carnivora	ANCESTRAL SPECIES	17	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000165152	ENSGT00390000006925 #35
Caniformia	ANCESTRAL SPECIES	14	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b.s.a #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000165152	ENSGT00390000006925 #35
Canidae	ANCESTRAL SPECIES	56	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00390000002565.k.a	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b.s.a.a #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000165152	ENSGT00390000006925 #35
Red fox	MODERN SPECIES	113	UBXN4 (ENSVVUG00000006542)	R3HDM1 (ENSVVUG00000006457)	ENSVVUG00000006450	ZRANB3 (ENSVVUG00000006362)	RAB3GAP1 (ENSVVUG00000006300)	MAP3K19 (ENSVVUG00000006280)	CCNT2 (ENSVVUG00000006262)	ACMSD (ENSVVUG00000006257)	TMEM163 (ENSVVUG00000006244)	MGAT5 (ENSVVUG00000006220)	NCKAP5 (ENSVVUG00000006181)	LYPD1 (ENSVVUG00000006177)	ENSVVUG00000006174	ENSVVUG00000006164 #21	ENSVVUG00000006163	ACTR3 (ENSVVUG00000006155) #22	DPP10 (ENSVVUG00000006103) #23
Canis_lupus	ANCESTRAL SPECIES	46	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT00940000158012.c.a.a.a	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00390000002565.k.a	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00950000183030.m.a.b.b.d.b.a	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b.s.a.a #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000165152
Dingo	MODERN SPECIES	101	ZRANB3 (ENSCAFG00020016080)	RAB3GAP1 (ENSCAFG00020015740)	ENSCAFG00020015733	CCNT2 (ENSCAFG00020015731)	ACMSD (ENSCAFG00020015725)	TMEM163 (ENSCAFG00020015719)	ENSCAFG00020015709	ENSCAFG00020015687	LYPD1 (ENSCAFG00020015684)	ENSCAFG00020015681	ENSCAFG00020015678	GPR39 (ENSCAFG00020015677)	ENSCAFG00020015676	SLC35F5 (ENSCAFG00020015641) #21	ENSCAFG00020015636	ACTR3 (ENSCAFG00020015635) #22	DPP10 (ENSCAFG00020014186) #23	DDX18 (ENSCAFG00020014114) #24	ENSCAFG00020014113	CCDC93 (ENSCAFG00020014106) #25	INSIG2 (ENSCAFG00020014102) #26	ENSCAFG00020014092	ENSCAFG00020014090	EN1 (ENSCAFG00020014084) #27	MARCO (ENSCAFG00020014069) #28	C1QL2 (ENSCAFG00020014066) #29	STEAP3 (ENSCAFG00020014063) #30	C2orf76 (ENSCAFG00020014061) #31	ENSCAFG00020014059 #32	TMEM37 (ENSCAFG00020014053) #33	SCTR (ENSCAFG00020014048) #34
Dog	MODERN SPECIES	10	ZRANB3 (ENSCAFG00845009173)	RAB3GAP1 (ENSCAFG00845008763)	MAP3K19 (ENSCAFG00845008480)	CCNT2 (ENSCAFG00845008293)	ACMSD (ENSCAFG00845008146)	TMEM163 (ENSCAFG00845008028)	MGAT5 (ENSCAFG00845007969)	ENSCAFG00845007813	NCKAP5 (ENSCAFG00845007269)	ENSCAFG00845006921	ENSCAFG00845006875	ENSCAFG00845006855	ENSCAFG00845006840	ENSCAFG00845006783 #21	ENSCAFG00845006717	ENSCAFG00845006622 #22	ENSCAFG00845006508	DPP10 (ENSCAFG00845006344) #23	ENSCAFG00845006094	DDX18 (ENSCAFG00845006065) #24	ENSCAFG00845006053	CCDC93 (ENSCAFG00845006007) #25	INSIG2 (ENSCAFG00845005970) #26	ENSCAFG00845005813	ENSCAFG00845005793	EN1 (ENSCAFG00845029136) #27	MARCO (ENSCAFG00845029094) #28	C1QL2 (ENSCAFG00845028993) #29	STEAP3 (ENSCAFG00845028945) #30	C2orf76 (ENSCAFG00845028896) #31	DBI (ENSCAFG00845028816) #32
Caniformia_b	ANCESTRAL SPECIES	13	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b.s.a #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Mustelinae	ANCESTRAL SPECIES	154	ENSGT01050000244824.D.b	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23
American mink	MODERN SPECIES	183										TMEM163 (ENSNVIG00000019615)	MGAT5 (ENSNVIG00000019620)	NCKAP5 (ENSNVIG00000019686)	LYPD1 (ENSNVIG00000019772)	GPR39 (ENSNVIG00000019795)	S35F5 (ENSNVIG00000019804) #21	ACTR3 (ENSNVIG00000019926) #22	ECI2 (ENSNVIG00000019991)	ENSNVIG00000020029	FAM217A (ENSNVIG00000020051)	PRPF4B (ENSNVIG00000020071)
Ferret	MODERN SPECIES	342											ENSMPUG00000010749	NCKAP5 (ENSMPUG00000010739)	GPR39 (ENSMPUG00000010736)	SLC35F5 (ENSMPUG00000010725) #21	ENSMPUG00000019181	ACTR3 (ENSMPUG00000010717) #22	DPP10 (ENSMPUG00000010707) #23
Ursidae	ANCESTRAL SPECIES	7	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b.s.a #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00390000010354 #36
Giant Panda	MODERN SPECIES	11	MCM6 (ENSAMEG00000005841)	LCT (ENSAMEG00000005800)	UBXN4 (ENSAMEG00000003672)	R3HDM1 (ENSAMEG00000014886)	ZRANB3 (ENSAMEG00000016419)	RAB3GAP1 (ENSAMEG00000016369)	MAP3K19 (ENSAMEG00000016364)	CCNT2 (ENSAMEG00000016341)	ACMSD (ENSAMEG00000016329)	TMEM163 (ENSAMEG00000016323)	MGAT5 (ENSAMEG00000016315)	NCKAP5 (ENSAMEG00000015179)	ENSAMEG00000003070	ENSAMEG00000003064	ENSAMEG00000003041 #21	ACTR3 (ENSAMEG00000014979) #22	DPP10 (ENSAMEG00000016502) #23	DDX18 (ENSAMEG00000012626) #24	ENSAMEG00000029074	CCDC93 (ENSAMEG00000012600) #25	INSIG2 (ENSAMEG00000012592) #26	ENSAMEG00000026450 #27	MARCO (ENSAMEG00000008460) #28	C1QL2 (ENSAMEG00000026220) #29	STEAP3 (ENSAMEG00000008497) #30	ENSAMEG00000008507 #31	DBI (ENSAMEG00000008509) #32	TMEM37 (ENSAMEG00000018844) #33	SCTR (ENSAMEG00000008518) #34	CFAP221 (ENSAMEG00000008585) #35	PTPN4 (ENSAMEG00000008588) #37
Ursus	ANCESTRAL SPECIES	162	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22
Polar bear	MODERN SPECIES	196	LCT (ENSUMAG00000005573)	UBXN4 (ENSUMAG00000005565)	R3HDM1 (ENSUMAG00000005552)	ZRANB3 (ENSUMAG00000005407)	RAB3GAP1 (ENSUMAG00000005260)	ENSUMAG00000005240	CCNT2 (ENSUMAG00000005230)	ACMSD (ENSUMAG00000005196)	TMEM163 (ENSUMAG00000005181)	MGAT5 (ENSUMAG00000005172)	ENSUMAG00000005144	LYPD1 (ENSUMAG00000005139)	ENSUMAG00000005137	GPR39 (ENSUMAG00000005134)	SLC35F5 (ENSUMAG00000005121) #21	ACTR3 (ENSUMAG00000004954) #22
American black bear	MODERN SPECIES	1458														ENSUAMG00000022944	SLC35F5 (ENSUAMG00000022871) #21	ACTR3 (ENSUAMG00000022870) #22
Felidae	ANCESTRAL SPECIES	15	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT01100000263767.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352.p #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000165152	ENSGT00390000006925 #35
Cat	MODERN SPECIES	239	ZRANB3 (ENSFCAG00000024830)	RAB3GAP1 (ENSFCAG00000040704)	MAP3K19 (ENSFCAG00000026221)	CCNT2 (ENSFCAG00000003956)	ACMSD (ENSFCAG00000003955)	TMEM163 (ENSFCAG00000045338)	MGAT5 (ENSFCAG00000015759)	ENSFCAG00000048299	ENSFCAG00000042540	ENSFCAG00000045530	ENSFCAG00000047696	NCKAP5 (ENSFCAG00000004991)	LYPD1 (ENSFCAG00000000024)	GPR39 (ENSFCAG00000000023)	SLC35F5 (ENSFCAG00000023214) #21	ACTR3 (ENSFCAG00000013525) #22	DPP10 (ENSFCAG00000005743) #23	ENSFCAG00000052897	DDX18 (ENSFCAG00000000753) #24	ENSFCAG00000010869	CCDC93 (ENSFCAG00000010870) #25	INSIG2 (ENSFCAG00000008978) #26	EN1 (ENSFCAG00000043894) #27	MARCO (ENSFCAG00000014026) #28	ENSFCAG00000048987 #29	ENSFCAG00000049463	STEAP3 (ENSFCAG00000007092) #30	DBI (ENSFCAG00000034130) #32	CC1H2orf76 (ENSFCAG00000004427) #31	TMEM37 (ENSFCAG00000012415) #33	SCTR (ENSFCAG00000004432) #34
Panthera	ANCESTRAL SPECIES	9	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT01100000263767.a.a	ENSGT00390000004755.z	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352.o.a #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000165152	ENSGT00390000006925 #35
Tiger	MODERN SPECIES	593	R3HDM1 (ENSPTIG00000016581)	ENSPTIG00000016006	ZRANB3 (ENSPTIG00000014207)	ENSPTIG00000013887	RAB3GAP1 (ENSPTIG00000012072)	ENSPTIG00000010805	CCNT2 (ENSPTIG00000008723)	ACMSD (ENSPTIG00000007502)	TMEM163 (ENSPTIG00000006597)	MGAT5 (ENSPTIG00000004901)	ENSPTIG00000002860	NCKAP5 (ENSPTIG00000021077)	LYPD1 (ENSPTIG00000020835)	GPR39 (ENSPTIG00000020659)	SLC35F5 (ENSPTIG00000017961) #21	ACTR3 (ENSPTIG00000017206) #22	DPP10 (ENSPTIG00000014928) #23	TMTC1 (ENSPTIG00000014312)	OVCH1 (ENSPTIG00000013280)	ERGIC2 (ENSPTIG00000012811)	FAR2 (ENSPTIG00000012687)
Panthera_a	ANCESTRAL SPECIES	6	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT01100000263767.a.a	ENSGT00390000004755.z	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352.p #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000165152	ENSGT00390000006925 #35
leopard	MODERN SPECIES	1	UBXN4 (ENSPPRG00000000615)	R3HDM1 (ENSPPRG00000002626)	ZRANB3 (ENSPPRG00000006011)	ENSPPRG00000006436	RAB3GAP1 (ENSPPRG00000009297)	ENSPPRG00000012476	CCNT2 (ENSPPRG00000013025)	ACMSD (ENSPPRG00000014298)	TMEM163 (ENSPPRG00000017089)	MGAT5 (ENSPPRG00000022919)	ENSPPRG00000018156	NCKAP5 (ENSPPRG00000001014)	LYPD1 (ENSPPRG00000001456)	GPR39 (ENSPPRG00000001979)	SLC35F5 (ENSPPRG00000003697) #21	ACTR3 (ENSPPRG00000004002) #22
lion	MODERN SPECIES	8	UBXN4 (ENSPLOG00000006259)	R3HDM1 (ENSPLOG00000006513)	ZRANB3 (ENSPLOG00000006791)	RAB3GAP1 (ENSPLOG00000006997)	MAP3K19 (ENSPLOG00000007107)	CCNT2 (ENSPLOG00000007236)	ACMSD (ENSPLOG00000007318)	TMEM163 (ENSPLOG00000007370)	MGAT5 (ENSPLOG00000007485)	ENSPLOG00000007548	ENSPLOG00000007558	NCKAP5 (ENSPLOG00000007593)	LYPD1 (ENSPLOG00000007721)	GPR39 (ENSPLOG00000007748)	SLC35F5 (ENSPLOG00000007783) #21	ACTR3 (ENSPLOG00000007973) #22	DPP10 (ENSPLOG00000008097) #23	DDX18 (ENSPLOG00000008410) #24	ENSPLOG00000008448	CCDC93 (ENSPLOG00000008468) #25	INSIG2 (ENSPLOG00000008517) #26	EN1 (ENSPLOG00000008546) #27	MARCO (ENSPLOG00000008598) #28	C1QL2 (ENSPLOG00000008738) #29	STEAP3 (ENSPLOG00000008769) #30	ENSPLOG00000008802 #31	DBI (ENSPLOG00000008854) #32	TMEM37 (ENSPLOG00000008951) #33	SCTR (ENSPLOG00000008978) #34	CFAP221 (ENSPLOG00000009073) #35	ENSPLOG00000009207 #36
Atlantogenata	ANCESTRAL SPECIES	9	ENSGT01050000244824.D.b	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23
Afrotheria	ANCESTRAL SPECIES	1	ENSGT01050000244824.D.b	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23
Tenrec	MODERN SPECIES	1611																ACTR3 (ENSETEG00000012720) #22
Afrotheria_a	ANCESTRAL SPECIES	1	ENSGT01050000244824.D.b	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23
Elephant	MODERN SPECIES	301	LCT (ENSLAFG00000009081)	UBXN4 (ENSLAFG00000009074)	R3HDM1 (ENSLAFG00000009065)	ZRANB3 (ENSLAFG00000015733)	RAB3GAP1 (ENSLAFG00000012024)	MAP3K19 (ENSLAFG00000008034)	CCNT2 (ENSLAFG00000008029)	ACMSD (ENSLAFG00000008025)	TMEM163 (ENSLAFG00000006542)	MGAT5 (ENSLAFG00000016247)	NCKAP5 (ENSLAFG00000014359)	LYPD1 (ENSLAFG00000020596)	ENSLAFG00000026153	GPR39 (ENSLAFG00000004083)	SLC35F5 (ENSLAFG00000006974) #21	ACTR3 (ENSLAFG00000013354) #22	DPP10 (ENSLAFG00000010652) #23	ENSLAFG00000025579
Hyrax	MODERN SPECIES	1283																ACTR3 (ENSPCAG00000006505) #22
Xenarthra	ANCESTRAL SPECIES																	ENSGT00940000155065 #22
Sloth	MODERN SPECIES	1413																ENSCHOG00000002963 #22
Armadillo	MODERN SPECIES	4501								ENSDNOG00000043667	NCKAP5 (ENSDNOG00000036913)	LYPD1 (ENSDNOG00000047273)	ENSDNOG00000036021	ENSDNOG00000036304	SLC35F5 (ENSDNOG00000041855) #21	ENSDNOG00000037464	ENSDNOG00000035162	ACTR3 (ENSDNOG00000010136) #22
Marsupialia	ANCESTRAL SPECIES	5	ENSGT00940000166747	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000178790	ENSGT00390000006925 #35
Marsupialia_b	ANCESTRAL SPECIES	3	ENSGT00940000166747	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000178790	ENSGT00390000006925 #35
Diprotodontia	ANCESTRAL SPECIES	40	ENSGT00940000166747	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22
Diprotodontia_a	ANCESTRAL SPECIES	39	ENSGT00940000166747	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22
koala	MODERN SPECIES	136	ENSPCIG00000034112	UBXN4 (ENSPCIG00000006935)	R3HDM1 (ENSPCIG00000002491)	ZRANB3 (ENSPCIG00000002444)	RAB3GAP1 (ENSPCIG00000002406)	ENSPCIG00000002384	CCNT2 (ENSPCIG00000002354)	ACMSD (ENSPCIG00000002314)	TMEM163 (ENSPCIG00000002266)	MGAT5 (ENSPCIG00000000463)	NCKAP5 (ENSPCIG00000024443)	LYPD1 (ENSPCIG00000024444)	ENSPCIG00000024445	ENSPCIG00000019348	SLC35F5 (ENSPCIG00000024574) #21	ACTR3 (ENSPCIG00000024570) #22
Common wonbat	MODERN SPECIES	1052	UBXN4 (ENSVURG00010006987)	R3HDM1 (ENSVURG00010007024)	ZRANB3 (ENSVURG00010007305)	RAB3GAP1 (ENSVURG00010007322)	ENSVURG00010007369	CCNT2 (ENSVURG00010007382)	ACMSD (ENSVURG00010007395)	TMEM163 (ENSVURG00010007413)	MGAT5 (ENSVURG00010007438)	ENSVURG00010007490	NCKAP5 (ENSVURG00010007509)	ENSVURG00010007522	ENSVURG00010007526	ENSVURG00010007531	ENSVURG00010007545 #21	ACTR3 (ENSVURG00010007571) #22
Wallaby	MODERN SPECIES	2384																ENSMEUG00000015990 #22
Tasmanian devil	MODERN SPECIES	2	MCM6 (ENSSHAG00000000346)	LCT (ENSSHAG00000017319)	ENSSHAG00000017244	R3HDM1 (ENSSHAG00000016999)	ZRANB3 (ENSSHAG00000016465)	RAB3GAP1 (ENSSHAG00000016199)	ENSSHAG00000015928	CCNT2 (ENSSHAG00000015774)	ACMSD (ENSSHAG00000025004)	TMEM163 (ENSSHAG00000014154)	MGAT5 (ENSSHAG00000013191)	NCKAP5 (ENSSHAG00000009085)	ENSSHAG00000008832	ENSSHAG00000024127	ENSSHAG00000002800 #21	ENSSHAG00000013117 #22	DPP10 (ENSSHAG00000010186) #23	ENSSHAG00000000873	DDX18 (ENSSHAG00000018781) #24	ENSSHAG00000032045	CCDC93 (ENSSHAG00000018688) #25	INSIG2 (ENSSHAG00000018592) #26	EN1 (ENSSHAG00000029860) #27	ENSSHAG00000017322 #28	C1QL2 (ENSSHAG00000025877) #29	STEAP3 (ENSSHAG00000016635) #30	C2orf76 (ENSSHAG00000025069) #31	ENSSHAG00000025578 #32	TMEM37 (ENSSHAG00000024776) #33	SCTR (ENSSHAG00000016070) #34	CFAP221 (ENSSHAG00000015680) #35
Opossum	DUPLICATION
Opossum	MODERN SPECIES	3	ZRANB3 (ENSMODG00000000848)	ENSMODG00000038786	RAB3GAP1 (ENSMODG00000000835)	ENSMODG00000000785	CCNT2 (ENSMODG00000000727)	ACMSD (ENSMODG00000000715)	ENSMODG00000024415	TMEM163 (ENSMODG00000000704)	MGAT5 (ENSMODG00000000690)	ENSMODG00000039758	NCKAP5 (ENSMODG00000024919)	LYPD1 (ENSMODG00000000657)	ENSMODG00000039684	ENSMODG00000024920	SLC35F5 (ENSMODG00000000615) #21	ACTR3 (ENSMODG00000000612) #22	ENSMODG00000044960	DPP10 (ENSMODG00000000555) #23	ENSMODG00000021045	ENSMODG00000041722	ENSMODG00000049065	DDX18 (ENSMODG00000000533) #24	ENSMODG00000000510	CCDC93 (ENSMODG00000000497) #25	ENSMODG00000000458 #26	ENSMODG00000051084	EN1 (ENSMODG00000000438) #27	MARCO (ENSMODG00000000433) #28	C1QL2 (ENSMODG00000000420) #29	STEAP3 (ENSMODG00000000408) #30	C2orf76 (ENSMODG00000043798) #31
Opossum	MODERN SPECIES	5	ENSMODG00000038345	PLAA (ENSMODG00000004155)	IFT74 (ENSMODG00000004236)	LRRC19 (ENSMODG00000004246)	TEK (ENSMODG00000004269)	ENSMODG00000004305	MOB3B (ENSMODG00000004294)	ENSMODG00000004309	C9orf72 (ENSMODG00000004328)	LINGO2 (ENSMODG00000025148)	ENSMODG00000046967	ENSMODG00000047494	ENSMODG00000044645	ENSMODG00000004341	ENSMODG00000041910	ENSMODG00000004424 #22	ENSMODG00000005705	ENSMODG00000039203	ENSMODG00000040853	ACO1 (ENSMODG00000004463)	NDUFB6 (ENSMODG00000004585)	TMEM215 (ENSMODG00000025140)	ENSMODG00000004608	PTGR1 (ENSMODG00000004680)	ENSMODG00000046345	ENSMODG00000004771	ENSMODG00000004719	ENSMODG00000038043	ENSMODG00000037931	ENSMODG00000010408	ENSMODG00000004809
Platypus	MODERN SPECIES		DNPEP (ENSOANG00000043343)	DES (ENSOANG00000044923)	ENSOANG00000048574	GMPPA (ENSOANG00000042671)	ENSOANG00000047961	ASIC4 (ENSOANG00000036681)	TMEM198 (ENSOANG00000045342)	ENSOANG00000028426	ENSOANG00000043036	ENSOANG00000042869	ENSOANG00000048016	SLC4A3 (ENSOANG00000038560)	ENSOANG00000048613	ENSOANG00000042746	ENSOANG00000033768 #21	ENSOANG00000049167 #22	DPP10 (ENSOANG00000047896) #23	DDX18 (ENSOANG00000050386) #24	CCDC93 (ENSOANG00000040049) #25	ENSOANG00000046004 ##26	ENSOANG00000002989 #27	ENSOANG00000048047 #28	C1QL2 (ENSOANG00000043110) #29	STEAP3 (ENSOANG00000040772) #30	C2orf76 (ENSOANG00000039631) #31	DBI (ENSOANG00000044604) #32	ENSOANG00000041713 #33	ENSOANG00000037952 #34	ENSOANG00000040756 #35	ENSOANG00000036384	ENSOANG00000042267
Sauria	ANCESTRAL SPECIES		ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000171141	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00940000178790
Archelosauria	ANCESTRAL SPECIES	8	ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000171141	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00940000178790
Archosauria	ANCESTRAL SPECIES	6	ENSGT00940000172822	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000171141	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00940000178790
Australian saltwater crocodile	MODERN SPECIES	66	ENSCPRG00005004804	R3HDM1 (ENSCPRG00005004542)	ZRANB3 (ENSCPRG00005004364)	RAB3GAP1 (ENSCPRG00005003872)	ENSCPRG00005003797	CCNT2 (ENSCPRG00005003794)	ENSCPRG00005003790	ACMSD (ENSCPRG00005003785)	TMEM163 (ENSCPRG00005003777)	MGAT5 (ENSCPRG00005003744)	ENSCPRG00005003730	NCKAP5 (ENSCPRG00005003668)	ENSCPRG00005003650	GPR39 (ENSCPRG00005003646)	SLC35F5 (ENSCPRG00005003643) #21	ACTR3 (ENSCPRG00005003555) #22	DPP10 (ENSCPRG00005003460) #23	DDX18 (ENSCPRG00005003425) #24	CCDC93 (ENSCPRG00005003409) #25	INSIG2 (ENSCPRG00005003394) #26	STEAP3 (ENSCPRG00005003364) #30	C2orf76 (ENSCPRG00005003361) #31	DBI (ENSCPRG00005003359) #32	TMEM37 (ENSCPRG00005003357) #33	SCTR (ENSCPRG00005003354) #34	ENSCPRG00005003346	CEP70 (ENSCPRG00005003340)	FAIM (ENSCPRG00005003325)	PARP9 (ENSCPRG00005003100)	DTX3L (ENSCPRG00005003075)	ENSCPRG00005003042
Aves	ANCESTRAL SPECIES	8	ENSGT00940000172822	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000171141	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00940000178790
African ostrich	MODERN SPECIES	692	NPY1R (ENSSCUG00000013539)	NPY5R (ENSSCUG00000013542)	TMA16 (ENSSCUG00000013543)	MARCHF1 (ENSSCUG00000013546)	SMIM31 (ENSSCUG00000013548)	TMEM192 (ENSSCUG00000013551)	KLHL2 (ENSSCUG00000013554)	MSMO1 (ENSSCUG00000013562)	CPE (ENSSCUG00000013565)	TLL1 (ENSSCUG00000013569)	SPOCK3 (ENSSCUG00000013577)	ANXA10 (ENSSCUG00000013580)	DDX60 (ENSSCUG00000013584)	PALLD (ENSSCUG00000013612)	CBR4 (ENSSCUG00000013631)	ACTR3 (ENSSCUG00000013633) #22	DPP10 (ENSSCUG00000013651) #23	ENSSCUG00000013697	DDX18 (ENSSCUG00000013699) #24	CCDC93 (ENSSCUG00000013701) #25	INSIG2 (ENSSCUG00000013704) #26	ENSSCUG00000013707	STEAP3 (ENSSCUG00000013709) #30	C2orf76 (ENSSCUG00000013710) #31	DBI (ENSSCUG00000013711) #32	TMEM37 (ENSSCUG00000013714) #33	SCTR (ENSSCUG00000013715) #34	CFAP221 (ENSSCUG00000013720) #35	ESYT3 (ENSSCUG00000013727)	CEP70 (ENSSCUG00000013738)	FAIM (ENSSCUG00000013742)
Neognathae	ANCESTRAL SPECIES	6	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000171141	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00940000178790
Neognathae_b	ANCESTRAL SPECIES	7	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000171141	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00940000178790
Neognathae_c	ANCESTRAL SPECIES	9	ENSGT01050000244824.D.b	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000165152	ENSGT00940000161072
Golden eagle	MODERN SPECIES	22	MCM6 (ENSACCG00020002049)	LCT (ENSACCG00020001924)	UBXN4 (ENSACCG00020001859)	R3HDM1 (ENSACCG00020001737)	ZRANB3 (ENSACCG00020001664)	RAB3GAP1 (ENSACCG00020001450)	ENSACCG00020001223	CCNT2 (ENSACCG00020001189)	ACMSD (ENSACCG00020001156)	TMEM163 (ENSACCG00020001133)	MGAT5 (ENSACCG00020001112)	NCKAP5 (ENSACCG00020001085)	LYPD1 (ENSACCG00020001065)	GPR39 (ENSACCG00020001056)	SLC35F5 (ENSACCG00020001037) #21	ACTR3 (ENSACCG00020001018) #22	DPP10 (ENSACCG00020000986) #23	DDX18 (ENSACCG00020000935) #24	ENSACCG00020000871	CCDC93 (ENSACCG00020000832) #25	INSIG2 (ENSACCG00020000804) #26	EN1 (ENSACCG00020000790) #27	MARCO (ENSACCG00020000763) #28	C1QL2 (ENSACCG00020000728) #29	STEAP3 (ENSACCG00020000701) #30	C2orf76 (ENSACCG00020000671) #31	DBI (ENSACCG00020000642) #32	TMEM37 (ENSACCG00020000624) #33	SCTR (ENSACCG00020000605) #34	ENSACCG00020000580	ESYT3 (ENSACCG00020000539)
Kakapo	MODERN SPECIES	22	MCM6 (ENSSHBG00005019682)	LCT (ENSSHBG00005019692)	UBXN4 (ENSSHBG00005019707)	R3HDM1 (ENSSHBG00005019728)	ZRANB3 (ENSSHBG00005019763)	RAB3GAP1 (ENSSHBG00005019778)	MAP3K19 (ENSSHBG00005019784)	CCNT2 (ENSSHBG00005019788)	ACMSD (ENSSHBG00005019791)	TMEM163 (ENSSHBG00005019795)	MGAT5 (ENSSHBG00005019800)	NCKAP5 (ENSSHBG00005019804)	LYPD1 (ENSSHBG00005019808)	GPR39 (ENSSHBG00005019810)	SLC35F5 (ENSSHBG00005019817) #21	ACTR3 (ENSSHBG00005000466) #22	DPP10 (ENSSHBG00005001557) #23	DDX18 (ENSSHBG00005001606) #24	ENSSHBG00005001662	CCDC93 (ENSSHBG00005001704) #25	INSIG2 (ENSSHBG00005001743) #26	EN1 (ENSSHBG00005001769) #27	MARCO (ENSSHBG00005001797) #28	C1QL2 (ENSSHBG00005001832) #29	STEAP3 (ENSSHBG00005001879) #30	C2orf76 (ENSSHBG00005001921) #31	ENSSHBG00005001950	TMEM37 (ENSSHBG00005001977) #33	SCTR (ENSSHBG00005002007) #34	ESYT3 (ENSSHBG00005002065)	CEP70 (ENSSHBG00005002124)
Passeriformes	ANCESTRAL SPECIES	6	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000171141	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00940000178790
Great tit	MODERN SPECIES	27	R3HDM1 (ENSPMJG00000019947)	ENSPMJG00000019946	RAB3GAP1 (ENSPMJG00000019945)	ENSPMJG00000019943	ENSPMJG00000019942	CCNT2 (ENSPMJG00000019941)	ACMSD (ENSPMJG00000019940)	TMEM163 (ENSPMJG00000019939)	MGAT5 (ENSPMJG00000019938)	NCKAP5 (ENSPMJG00000019937)	LYPD1 (ENSPMJG00000019936)	ENSPMJG00000019935	GPR39 (ENSPMJG00000019934)	SLC35F5 (ENSPMJG00000019933) #21	ENSPMJG00000019932	ACTR3 (ENSPMJG00000019931) #22	DPP10 (ENSPMJG00000019929) #23	DDX18 (ENSPMJG00000019927) #24	ENSPMJG00000019926	CCDC93 (ENSPMJG00000019925) #25	INSIG2 (ENSPMJG00000019924) #26	MARCO (ENSPMJG00000019921) #28	C1QL2 (ENSPMJG00000019920) #29	STEAP3 (ENSPMJG00000019919) #30	C2orf76 (ENSPMJG00000019918) #31	DBI (ENSPMJG00000019917) #32	TMEM37 (ENSPMJG00000019916) #33	SCTR (ENSPMJG00000019915) #34	ENSPMJG00000019914	ENSPMJG00000019913	ENSPMJG00000019912
Passeriformes_d	ANCESTRAL SPECIES	8	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000171141	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00940000161072
Flycatcher	MODERN SPECIES	26	LCT (ENSFALG00000013735)	UBXN4 (ENSFALG00000013733)	R3HDM1 (ENSFALG00000013731)	ENSFALG00000013728	RAB3GAP1 (ENSFALG00000013727)	MAP3K19 (ENSFALG00000013726)	CCNT2 (ENSFALG00000013725)	ACMSD (ENSFALG00000013724)	TMEM163 (ENSFALG00000013723)	MGAT5 (ENSFALG00000013722)	NCKAP5 (ENSFALG00000026028)	LYPD1 (ENSFALG00000013717)	ENSFALG00000024409	GPR39 (ENSFALG00000024975)	SLC35F5 (ENSFALG00000013716) #21	ACTR3 (ENSFALG00000013704) #22	DPP10 (ENSFALG00000013689) #23	DDX18 (ENSFALG00000013672) #24	ENSFALG00000013667	CCDC93 (ENSFALG00000013655) #25	INSIG2 (ENSFALG00000013646) #26	ENSFALG00000028266	MARCO (ENSFALG00000013637) #28	C1QL2 (ENSFALG00000013633) #29	STEAP3 (ENSFALG00000026887) #30	C2orf76 (ENSFALG00000025829) #31	DBI (ENSFALG00000025662) #32	TMEM37 (ENSFALG00000013623) #33	SCTR (ENSFALG00000013594) #34	CFAP221 (ENSFALG00000013582) #35	ESYT3 (ENSFALG00000013567)
Passeriformes_g	ANCESTRAL SPECIES	9	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000171141	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00940000161072
Medium ground finch	MODERN SPECIES	1	ENSGFOG00000003789	ENSGFOG00000003801	ZRANB3 (ENSGFOG00000003813)	RAB3GAP1 (ENSGFOG00000003907)	ENSGFOG00000004421	ENSGFOG00000004427	CCNT2 (ENSGFOG00000004444)	ACMSD (ENSGFOG00000004449)	TMEM163 (ENSGFOG00000004462)	MGAT5 (ENSGFOG00000004477)	NCKAP5 (ENSGFOG00000004514)	LYPD1 (ENSGFOG00000004572)	GPR39 (ENSGFOG00000004584)	ENSGFOG00000004597	SLC35F5 (ENSGFOG00000004612) #21	ACTR3 (ENSGFOG00000004640) #22	DPP10 (ENSGFOG00000004798) #23	DDX18 (ENSGFOG00000004826) #24	ENSGFOG00000004840	CCDC93 (ENSGFOG00000004846) #25	INSIG2 (ENSGFOG00000004873) #26	MARCO (ENSGFOG00000004881) #28	STEAP3 (ENSGFOG00000004909) #30	C2orf76 (ENSGFOG00000004979) #31	DBI (ENSGFOG00000004994) #32	TMEM37 (ENSGFOG00000005003) #33	SCTR (ENSGFOG00000005011) #34	ENSGFOG00000005038	ESYT3 (ENSGFOG00000005062)	CEP70 (ENSGFOG00000005278)	FAIM (ENSGFOG00000005307)
Passeroidea	ANCESTRAL SPECIES	8	ENSGT00940000155324.ab.b	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00940000161072
Common canary	MODERN SPECIES	8	LCT (ENSSCAG00000010173)	UBXN4 (ENSSCAG00000010209)	R3HDM1 (ENSSCAG00000010246)	ZRANB3 (ENSSCAG00000010440)	RAB3GAP1 (ENSSCAG00000010593)	ENSSCAG00000010603	CCNT2 (ENSSCAG00000010609)	ACMSD (ENSSCAG00000010635)	TMEM163 (ENSSCAG00000010647)	MGAT5 (ENSSCAG00000010656)	NCKAP5 (ENSSCAG00000010674)	LYPD1 (ENSSCAG00000010679)	ENSSCAG00000010704	GPR39 (ENSSCAG00000010738)	SLC35F5 (ENSSCAG00000010739) #21	ACTR3 (ENSSCAG00000010749) #22	DPP10 (ENSSCAG00000010815) #23	DDX18 (ENSSCAG00000010971) #24	ENSSCAG00000010980	CCDC93 (ENSSCAG00000010986) #25	INSIG2 (ENSSCAG00000010992) #26	MARCO (ENSSCAG00000010994) #28	STEAP3 (ENSSCAG00000010999) #30	C2orf76 (ENSSCAG00000011003) #31	DBI (ENSSCAG00000011005) #32	TMEM37 (ENSSCAG00000011008) #33	SCTR (ENSSCAG00000011011) #34	CFAP221 (ENSSCAG00000011018) #35	ESYT3 (ENSSCAG00000011029)	CEP70 (ENSSCAG00000011041)	FAIM (ENSSCAG00000011051)
Zebra finch	MODERN SPECIES	29	ENSTGUG00000025578	UBXN4 (ENSTGUG00000011772)	R3HDM1 (ENSTGUG00000011750)	ENSTGUG00000011743	RAB3GAP1 (ENSTGUG00000011724)	MAP3K19 (ENSTGUG00000029229)	CCNT2 (ENSTGUG00000011715)	ACMSD (ENSTGUG00000011711)	TMEM163 (ENSTGUG00000011703)	MGAT5 (ENSTGUG00000011688)	NCKAP5 (ENSTGUG00000011682)	LYPD1 (ENSTGUG00000029108)	ENSTGUG00000026176	GPR39 (ENSTGUG00000011677)	SLC35F5 (ENSTGUG00000011670) #21	ACTR3 (ENSTGUG00000011659) #22	DPP10 (ENSTGUG00000011635) #23	DDX18 (ENSTGUG00000011611) #24	ENSTGUG00000025171	CCDC93 (ENSTGUG00000011578) #25	INSIG2 (ENSTGUG00000024967) #26	EN1 (ENSTGUG00000026138) #27	MARCO (ENSTGUG00000011573) #28	C1QL2 (ENSTGUG00000020805) #29	ENSTGUG00000022199	STEAP3 (ENSTGUG00000011567) #30	C2orf76 (ENSTGUG00000028332) #31	DBI (ENSTGUG00000026977) #32	TMEM37 (ENSTGUG00000029671) #33	SCTR (ENSTGUG00000011525) #34	CFAP221 (ENSTGUG00000011524) #35
Galloanserae	ANCESTRAL SPECIES	7	ENSGT01050000244824.D.b	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT00500000045852	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35
Phasianidae	ANCESTRAL SPECIES	8	ENSGT01050000244824.D.b	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170.c	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00940000161072	ENSGT00390000009029
Japanese quail	MODERN SPECIES	25	MCM6 (ENSCJPG00005020470)	LCT (ENSCJPG00005020468)	UBXN4 (ENSCJPG00005020464)	R3HDM1 (ENSCJPG00005020461)	ZRANB3 (ENSCJPG00005020460)	RAB3GAP1 (ENSCJPG00005020459)	MAP3K19 (ENSCJPG00005020458)	CCNT2 (ENSCJPG00005020457)	ACMSD (ENSCJPG00005020456)	TMEM163 (ENSCJPG00005020455)	MGAT5 (ENSCJPG00005020454)	NCKAP5 (ENSCJPG00005020452)	ENSCJPG00005020450	GPR39 (ENSCJPG00005020449)	SLC35F5 (ENSCJPG00005020446) #21	ACTR3 (ENSCJPG00005020443) #22	CSRNP3 (ENSCJPG00005020436)	ENSCJPG00005020435	ENSCJPG00005019326	SCN3A (ENSCJPG00005015907)	SLC38A11 (ENSCJPG00005015801)	COBLL1 (ENSCJPG00005015791)	GRB14 (ENSCJPG00005015780)	FIGN (ENSCJPG00005015773)	KCNH7 (ENSCJPG00005015749)	IFIH1 (ENSCJPG00005015288)	FAP (ENSCJPG00005014311)	GCG (ENSCJPG00005014308)	ENSCJPG00005014307	SLC4A10 (ENSCJPG00005014306)	TBR1 (ENSCJPG00005014304)
Phasianidae_b	ANCESTRAL SPECIES	8	ENSGT01050000244824.D.b	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170.c	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00940000161072	ENSGT00390000009029
Chicken	MODERN SPECIES	36	MCM6 (ENSGALG00010019843)	LCT (ENSGALG00010019823)	UBXN4 (ENSGALG00010019811)	R3HDM1 (ENSGALG00010019786)	ZRANB3 (ENSGALG00010019717)	RAB3GAP1 (ENSGALG00010019643)	MAP3K19 (ENSGALG00010019600)	CCNT2 (ENSGALG00010019587)	ACMSD (ENSGALG00010019550)	TMEM163 (ENSGALG00010019474)	MGAT5 (ENSGALG00010019461)	NCKAP5 (ENSGALG00010019443)	LYPD1 (ENSGALG00010019423)	GPR39 (ENSGALG00010019416)	SLC35F5 (ENSGALG00010019398) #21	ACTR3 (ENSGALG00010019319) #22	DPP10 (ENSGALG00010021532) #23	DDX18 (ENSGALG00010021138) #24	CCDC93 (ENSGALG00010020963) #25	INSIG2 (ENSGALG00010020922) #26	EN1 (ENSGALG00010020915) #27	MARCO (ENSGALG00010020896) #28	C1QL2 (ENSGALG00010020798) #29	STEAP3 (ENSGALG00010020794) #30	C2orf76 (ENSGALG00010020766) #31	DBI (ENSGALG00010020747) #32	TMEM37 (ENSGALG00010020728) #33	SCTR (ENSGALG00010020713) #34	CFAP221 (ENSGALG00010020680) #35	ESYT3 (ENSGALG00010020664)	CEP70 (ENSGALG00010020646)
Turkey	MODERN SPECIES	27											ENSMGAG00000012332 #26	ENSMGAG00000012334 #25	ENSMGAG00000012345 #24	ENSMGAG00000020300 #23	ENSMGAG00000012354 #23	ENSMGAG00000012404 #22	ENSMGAG00000012413 #21	ENSMGAG00000015953	ENSMGAG00000012403	ENSMGAG00000021759	ENSMGAG00000018410	NCKAP5 (ENSMGAG00000012414)	ENSMGAG00000012429	ENSMGAG00000012420	ENSMGAG00000022328	ACMSD (ENSMGAG00000012432)	ENSMGAG00000012454	RAB3GAP1 (ENSMGAG00000012443)	ENSMGAG00000015963	ENSMGAG00000012437	ENSMGAG00000022859
Anatidae	ANCESTRAL SPECIES	37	ENSGT00940000155324	ENSGT00940000170936	ENSGT00940000172822	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT00500000045852	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00940000154865	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35
Pink-footed goose	MODERN SPECIES	25	ENSABRG00000005965	ENSABRG00000005951	R3HDM1 (ENSABRG00000005348)	ZRANB3 (ENSABRG00000005082)	RAB3GAP1 (ENSABRG00000003654)	ENSABRG00000003526	ENSABRG00000003516	CCNT2 (ENSABRG00000003228)	ACMSD (ENSABRG00000003121)	TMEM163 (ENSABRG00000003073)	MGAT5 (ENSABRG00000002157)	NCKAP5 (ENSABRG00000001938)	ENSABRG00000001884	GPR39 (ENSABRG00000001844)	SLC35F5 (ENSABRG00000001783) #21	ACTR3 (ENSABRG00000001760) #22	ENSABRG00000001742	DPP10 (ENSABRG00000001434) #23	DDX18 (ENSABRG00000001342) #24	ENSABRG00000001327	ENSABRG00000001320	CCDC93 (ENSABRG00000001244) #25	INSIG2 (ENSABRG00000001215) #26	EN1 (ENSABRG00000001167) #27	ENSABRG00000001002	C1QL2 (ENSABRG00000000968) #29	STEAP3 (ENSABRG00000000959) #30	C2orf76 (ENSABRG00000000943) #31	DBI (ENSABRG00000000933) #32	TMEM37 (ENSABRG00000000921) #33	SCTR (ENSABRG00000000883) #34
Duck	MODERN SPECIES	25	MCM6 (ENSAPLG00000016365)	LCT (ENSAPLG00000016089)	ENSAPLG00000030618	ENSAPLG00000026872	R3HDM1 (ENSAPLG00000015231)	ZRANB3 (ENSAPLG00000014815)	RAB3GAP1 (ENSAPLG00000014149)	MAP3K19 (ENSAPLG00000029463)	CCNT2 (ENSAPLG00000013992)	ACMSD (ENSAPLG00000013859)	TMEM163 (ENSAPLG00000024555)	MGAT5 (ENSAPLG00000013548)	NCKAP5 (ENSAPLG00000013464)	GPR39 (ENSAPLG00000013436)	SLC35F5 (ENSAPLG00000013162) #21	ACTR3 (ENSAPLG00000012845) #22	ENSAPLG00000028704	DPP10 (ENSAPLG00000012081) #23	DDX18 (ENSAPLG00000011648) #24	ENSAPLG00000025537	CCDC93 (ENSAPLG00000010805) #25	INSIG2 (ENSAPLG00000016106) #26	EN1 (ENSAPLG00000021676) #27	ENSAPLG00000000588	C1QL2 (ENSAPLG00000029910) #29	STEAP3 (ENSAPLG00000000975) #30	C2orf76 (ENSAPLG00000001103) #31	DBI (ENSAPLG00000008597) #32	TMEM37 (ENSAPLG00000001110) #33	SCTR (ENSAPLG00000008608) #34	CFAP221 (ENSAPLG00000009264) #35
Cryptodira	ANCESTRAL SPECIES	5	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00940000161072	ENSGT00390000009029
Chinese turtle	MODERN SPECIES	2215										ENSPSIG00000001571	NCKAP5 (ENSPSIG00000002891)	ENSPSIG00000001578	LYPD1 (ENSPSIG00000002919)	GPR39 (ENSPSIG00000002921)	SLC35F5 (ENSPSIG00000002923) #21	ACTR3 (ENSPSIG00000002957) #22	DPP10 (ENSPSIG00000002964) #23	ENSPSIG00000001588	ENSPSIG00000002966	DDX18 (ENSPSIG00000002977) #24	INSIG2 (ENSPSIG00000003037) #26	EN1 (ENSPSIG00000003044) #27	ENSPSIG00000003054	ENSPSIG00000001591 #29	STEAP3 (ENSPSIG00000003194) #30	C2orf76 (ENSPSIG00000003312) #31	DBI (ENSPSIG00000003317) #32	TMEM37 (ENSPSIG00000003326) #33	SCTR (ENSPSIG00000003330) #34	CFAP221 (ENSPSIG00000003411) #35	ESYT3 (ENSPSIG00000003444)
Testudinoidea	ANCESTRAL SPECIES	11	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00940000165152	ENSGT00940000161072
Testudinidae	ANCESTRAL SPECIES	8	ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00950000185980	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000165152	ENSGT00940000161072	ENSGT00390000009029
Abingdon island giant tortoise	MODERN SPECIES	974											NCKAP5 (ENSCABG00000009946)	LYPD1 (ENSCABG00000009942)	ENSCABG00000009941	GPR39 (ENSCABG00000009939)	SLC35F5 (ENSCABG00000009482) #21	ACTR3 (ENSCABG00000009473) #22
Goode s thornscrub tortoise	MODERN SPECIES	2	UBXN4 (ENSGEVG00005021073)	R3HDM1 (ENSGEVG00005021076)	ZRANB3 (ENSGEVG00005021082)	RAB3GAP1 (ENSGEVG00005021086)	ENSGEVG00005021095	ENSGEVG00005021097	ENSGEVG00005021102	ACMSD (ENSGEVG00005021106)	TMEM163 (ENSGEVG00005021110)	ENSGEVG00005021113	MGAT5 (ENSGEVG00005021116)	NCKAP5 (ENSGEVG00005021121)	LYPD1 (ENSGEVG00005021126)	GPR39 (ENSGEVG00005021128)	SLC35F5 (ENSGEVG00005021132) #21	ACTR3 (ENSGEVG00005021138) #22	DPP10 (ENSGEVG00005021153) #23	DDX18 (ENSGEVG00005021167) #24	ENSGEVG00005021170	CCDC93 (ENSGEVG00005021172) #25	INSIG2 (ENSGEVG00005021181) #26	EN1 (ENSGEVG00005021186) #27	C1QL2 (ENSGEVG00005021188) #29	STEAP3 (ENSGEVG00005021190) #30	C2orf76 (ENSGEVG00005021194) #31	DBI (ENSGEVG00005021198) #32	TMEM37 (ENSGEVG00005021202) #33	SCTR (ENSGEVG00005021205) #34	ENSGEVG00005021212	ENSGEVG00005004084	CEP70 (ENSGEVG00005004129)
Emydidae	ANCESTRAL SPECIES	4	ENSGT00940000160205	ENSGT00940000156457	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00390000006925 #35	ENSGT00940000161072	ENSGT00390000009029
Three-toed box turtle	MODERN SPECIES	25	ENSTMTG00000014891	ENSTMTG00000014877	R3HDM1 (ENSTMTG00000014805)	ZRANB3 (ENSTMTG00000014762)	RAB3GAP1 (ENSTMTG00000014691)	MAP3K19 (ENSTMTG00000014649)	CCNT2 (ENSTMTG00000014231)	ACMSD (ENSTMTG00000014161)	TMEM163 (ENSTMTG00000014144)	MGAT5 (ENSTMTG00000014128)	NCKAP5 (ENSTMTG00000014099)	LYPD1 (ENSTMTG00000014084)	ENSTMTG00000014075	GPR39 (ENSTMTG00000014070)	SLC35F5 (ENSTMTG00000014043) #21	ACTR3 (ENSTMTG00000014008) #22	DPP10 (ENSTMTG00000013893) #23	DDX18 (ENSTMTG00000013762) #24	ENSTMTG00000013724	CCDC93 (ENSTMTG00000013694) #25	INSIG2 (ENSTMTG00000013675) #26	EN1 (ENSTMTG00000013659) #27	C1QL2 (ENSTMTG00000013645) #29	STEAP3 (ENSTMTG00000013630) #30	C2orf76 (ENSTMTG00000013613) #31	DBI (ENSTMTG00000013605) #32	TMEM37 (ENSTMTG00000013600) #33	SCTR (ENSTMTG00000013571) #34	ENSTMTG00000013537	ESYT3 (ENSTMTG00000013474)	CEP70 (ENSTMTG00000013448)
painted turtle	MODERN SPECIES	13	DPP10 (ENSCPBG00000010272) #23	ENSCPBG00000010263	ZRANB3 (ENSCPBG00000010250)	RAB3GAP1 (ENSCPBG00000010240)	ENSCPBG00000010231	CCNT2 (ENSCPBG00000010223)	ACMSD (ENSCPBG00000010217)	TMEM163 (ENSCPBG00000010214)	MGAT5 (ENSCPBG00000010211)	NCKAP5 (ENSCPBG00000010195)	LYPD1 (ENSCPBG00000010186)	ENSCPBG00000010185	GPR39 (ENSCPBG00000010183)	SLC35F5 (ENSCPBG00000010179) #21	ENSCPBG00000010175	ACTR3 (ENSCPBG00000010170) #22	THSD7B (ENSCPBG00000010150)	CXCR4 (ENSCPBG00000010145)	DARS1 (ENSCPBG00000010133)	MCM6 (ENSCPBG00000010128)	LCT (ENSCPBG00000010124)	UBXN4 (ENSCPBG00000010085)	ENSCPBG00000010073	R3HDM1 (ENSCPBG00000009645)	MS4A12 (ENSCPBG00000009604)	TCN1 (ENSCPBG00000009594)	CBLIF (ENSCPBG00000009582)	MRPL16 (ENSCPBG00000009578)	ENSCPBG00000009572	STX3 (ENSCPBG00000009554)	OSBP (ENSCPBG00000009513)
Lepidosauria	ANCESTRAL SPECIES	7	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT01030000235139	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT01010000222287.B.a.b.b	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000165152	ENSGT00940000169408
tuatara	MODERN SPECIES	205	DARS1 (ENSSPUG00000004559)	LCT (ENSSPUG00000004436)	UBXN4 (ENSSPUG00000004414)	R3HDM1 (ENSSPUG00000004167)	ZRANB3 (ENSSPUG00000004049)	RAB3GAP1 (ENSSPUG00000003963)	ENSSPUG00000003933	ACMSD (ENSSPUG00000003910)	TMEM163 (ENSSPUG00000003811)	MGAT5 (ENSSPUG00000003754)	ENSSPUG00000003736	LYPD1 (ENSSPUG00000003707)	ENSSPUG00000003700	ENSSPUG00000003692	SLC35F5 (ENSSPUG00000003677) #21	ACTR3 (ENSSPUG00000003651) #22	DPP10 (ENSSPUG00000003624) #23
Episquamata	ANCESTRAL SPECIES		ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b.f	ENSGT01030000235139	ENSGT01100000263518.A.a.b.e	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000165152	ENSGT00940000169408	ENSGT00390000006925 #35
Toxicofera	ANCESTRAL SPECIES	10	ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b.f	ENSGT01030000235139	ENSGT01100000263518.A.a.b.e	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000165152	ENSGT00940000169408	ENSGT00940000161072
Lizard	MODERN SPECIES		ENSACAG00000041561	KALRN (ENSACAG00000010381)	ENSACAG00000044437	ENSACAG00000029257	CCDC14 (ENSACAG00000010616)	ENSACAG00000010638	ENSACAG00000035341	MYLK (ENSACAG00000010640)	HACD2 (ENSACAG00000010728)	ADCY5 (ENSACAG00000010774)	SEC22A (ENSACAG00000011029)	PDIA5 (ENSACAG00000011064)	ENSACAG00000045091	ENSACAG00000043603	SLC35F5 (ENSACAG00000002712) #21	ACTR3 (ENSACAG00000002564) #22	ENSACAG00000026449	ENSACAG00000039289	DPP10 (ENSACAG00000002171) #23	ENSACAG00000041076	ENSACAG00000039478	ENSACAG00000039374	DDX18 (ENSACAG00000002045) #24	CCDC93 (ENSACAG00000001798) #25	INSIG2 (ENSACAG00000037392) #26	EN1 (ENSACAG00000001792) #27	ENSACAG00000041716	SEMA5B (ENSACAG00000005053)	ENSACAG00000005017	ENSACAG00000037676	HSPBAP1 (ENSACAG00000004997)
Elapidae	ANCESTRAL SPECIES		ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759.r.a	ENSGT00940000155759.r.b	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT01030000235139	ENSGT00390000002215	ENSGT01100000263518.A.a.b.e	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000165152	ENSGT00940000161072	ENSGT00390000009029
Indian cobra	MODERN SPECIES		ENSNNAG00000014910	RAB3GAP1 (ENSNNAG00000015078)	ENSNNAG00000015109	ENSNNAG00000015126	ENSNNAG00000015156	ENSNNAG00000015163	ENSNNAG00000015191	ENSNNAG00000015219	TMEM163 (ENSNNAG00000015249)	MGAT5 (ENSNNAG00000015375)	ENSNNAG00000015394	ENSNNAG00000015404	LYPD1 (ENSNNAG00000015440)	GPR39 (ENSNNAG00000015448)	SLC35F5 (ENSNNAG00000015460) #21	ACTR3 (ENSNNAG00000015520) #22	DPP10 (ENSNNAG00000015568) #23	DDX18 (ENSNNAG00000015669) #24	CCDC93 (ENSNNAG00000015701) #25	INSIG2 (ENSNNAG00000015758) #26	EN1 (ENSNNAG00000015769) #27	MARCO (ENSNNAG00000015778) #28	C1QL2 (ENSNNAG00000015793) #29	STEAP3 (ENSNNAG00000015802) #30	C2orf76 (ENSNNAG00000015814) #31	ENSNNAG00000015832 #32	TMEM37 (ENSNNAG00000015842) #33	SCTR (ENSNNAG00000015847) #34	ENSNNAG00000015869	ENSNNAG00000015891	CEP70 (ENSNNAG00000015922)
Elapidae_a	ANCESTRAL SPECIES	5	ENSGT00940000156457	ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759.r.a	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT01030000235139	ENSGT00390000002215	ENSGT01100000263518.A.a.b.e	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000165152	ENSGT00940000161072	ENSGT00390000009029	ENSGT00390000007364	ENSGT00940000158837
Blue-lipped sea krait	MODERN SPECIES	3508																ACTR3 (ENSLLTG00000001817) #22
Acanthophiinae	ANCESTRAL SPECIES	7	ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759.r.a	ENSGT00940000155759.r.b	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT01030000235139	ENSGT00390000002215	ENSGT01100000263518.A.a.b.e	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000165152	ENSGT00940000161072	ENSGT00390000009029	ENSGT00390000007364	ENSGT00940000158837
Eastern brown snake	MODERN SPECIES	71	ENSPTXG00000011824	ENSPTXG00000011823	R3HDM1 (ENSPTXG00000011817)	ZRANB3 (ENSPTXG00000011811)	RAB3GAP1 (ENSPTXG00000011810)	ENSPTXG00000011809	CCNT2 (ENSPTXG00000011808)	ACMSD (ENSPTXG00000011807)	TMEM163 (ENSPTXG00000011806)	MGAT5 (ENSPTXG00000011804)	NCKAP5 (ENSPTXG00000011606)	ENSPTXG00000011602	LYPD1 (ENSPTXG00000011601)	GPR39 (ENSPTXG00000011600)	SLC35F5 (ENSPTXG00000011599) #21	ACTR3 (ENSPTXG00000011598) #22	ENSPTXG00000011597	DPP10 (ENSPTXG00000011596) #23	DDX18 (ENSPTXG00000011595) #24	CCDC93 (ENSPTXG00000011594) #25	INSIG2 (ENSPTXG00000011593) #26	C1QL2 (ENSPTXG00000011592) #29	STEAP3 (ENSPTXG00000011591) #30	C2orf76 (ENSPTXG00000011590) #31	DBI (ENSPTXG00000011589) #32	TMEM37 (ENSPTXG00000011588) #33	SCTR (ENSPTXG00000011524) #34	ENSPTXG00000011523	CEP70 (ENSPTXG00000011522)	FAIM (ENSPTXG00000011521)	PARP9 (ENSPTXG00000011519)
Mainland tiger snake	MODERN SPECIES	12	ENSNSUG00000007705	R3HDM1 (ENSNSUG00000007707)	ZRANB3 (ENSNSUG00000007861)	ENSNSUG00000007862	RAB3GAP1 (ENSNSUG00000007864)	ENSNSUG00000009065	ENSNSUG00000009066	ENSNSUG00000009067	ACMSD (ENSNSUG00000009068)	TMEM163 (ENSNSUG00000009070)	MGAT5 (ENSNSUG00000009071)	NCKAP5 (ENSNSUG00000009074)	LYPD1 (ENSNSUG00000009129)	GPR39 (ENSNSUG00000009130)	SLC35F5 (ENSNSUG00000009131) #21	ACTR3 (ENSNSUG00000009133) #22	ENSNSUG00000009134	DPP10 (ENSNSUG00000009136) #23	DDX18 (ENSNSUG00000009142) #24	CCDC93 (ENSNSUG00000009330) #25	INSIG2 (ENSNSUG00000009857) #26	ENSNSUG00000009858	EN1 (ENSNSUG00000009859) #27	MARCO (ENSNSUG00000009860) #28	STEAP3 (ENSNSUG00000009861) #30	C2orf76 (ENSNSUG00000009862) #31	DBI (ENSNSUG00000009863) #32	TMEM37 (ENSNSUG00000009864) #33	SCTR (ENSNSUG00000009865) #34	ENSNSUG00000009866	ENSNSUG00000009867
Laterata	ANCESTRAL SPECIES	2	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT01100000263518.A.a.b.f	ENSGT01030000235139	ENSGT00390000002215	ENSGT01100000263518.A.a.b.e	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.D #23	ENSGT00680000100037 #24	ENSGT00940000164988.i	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000160618 #34	ENSGT00940000165152	ENSGT00940000169408
Common wall lizard	MODERN SPECIES		R3HDM1 (ENSPMRG00000006817)	ZRANB3 (ENSPMRG00000006784)	RAB3GAP1 (ENSPMRG00000006767)	MAP3K19 (ENSPMRG00000006759)	CCNT2 (ENSPMRG00000006745)	ACMSD (ENSPMRG00000006733)	ENSPMRG00000006728	ENSPMRG00000006724	TMEM163 (ENSPMRG00000006721)	MGAT5 (ENSPMRG00000006713)	NCKAP5 (ENSPMRG00000006694)	LYPD1 (ENSPMRG00000006685)	GPR39 (ENSPMRG00000006679)	SLC35F5 (ENSPMRG00000006661) #21	ENSPMRG00000006655	ACTR3 (ENSPMRG00000006645) #22	ENSPMRG00000006640	ENSPMRG00000006638	DPP10 (ENSPMRG00000006619) #23	DDX18 (ENSPMRG00000006565) #24	ENSPMRG00000006546	ENSPMRG00000006543	CCDC93 (ENSPMRG00000006514) #25	ENSPMRG00000006497 #26	ENSPMRG00000006487 #26	ENSPMRG00000006476	EN1 (ENSPMRG00000006467) #27	ENSPMRG00000006453	C1QL2 (ENSPMRG00000006446) #29	STEAP3 (ENSPMRG00000006440) #30	C2orf76 (ENSPMRG00000006433) #31
Argentine black and white tegu	MODERN SPECIES	27	RAB3GAP1 (ENSSMRG00000014420)	ENSSMRG00000014419	ENSSMRG00000014418	ENSSMRG00000014417	CCNT2 (ENSSMRG00000014415)	ACMSD (ENSSMRG00000014414)	ENSSMRG00000014413	TMEM163 (ENSSMRG00000014412)	MGAT5 (ENSSMRG00000014410)	NCKAP5 (ENSSMRG00000014407)	ENSSMRG00000014406	ENSSMRG00000014405	LYPD1 (ENSSMRG00000014404)	ENSSMRG00000014403	SLC35F5 (ENSSMRG00000014402) #21	ACTR3 (ENSSMRG00000014400) #22	DPP10 (ENSSMRG00000014398) #23	ENSSMRG00000014396	DDX18 (ENSSMRG00000014395) #24	ENSSMRG00000014393	CCDC93 (ENSSMRG00000014392) #25	INSIG2 (ENSSMRG00000014389) #26	EN1 (ENSSMRG00000014387) #27	ENSSMRG00000014381 #28	C1QL2 (ENSSMRG00000014380) #29	STEAP3 (ENSSMRG00000014378) #30	C2orf76 (ENSSMRG00000014376) #31	ENSSMRG00000014375 #32	ENSSMRG00000014374	TMEM37 (ENSSMRG00000014373) #33	SCTR (ENSSMRG00000014372) #34
Anura	DUPLICATION
Anura	ANCESTRAL SPECIES	15	ENSGT00390000000713	ENSGT00940000154534.a	ENSGT00390000011219	ENSGT00640000092844	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603	ENSGT00940000160397	ENSGT00940000153704.B	ENSGT00550000074898	ENSGT00940000155246	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065.c #22	ENSGT00680000100037 #24	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00940000165589	ENSGT00940000159730	ENSGT00550000074820	ENSGT00940000159874	ENSGT00940000154775.c.a	ENSGT00950000183492	ENSGT00390000014175
Leishan spiny toad	MODERN SPECIES	99																ENSLLEG00000024022 #22
Frog	MODERN SPECIES	9														ENSXETG00000048453	SLC35F5 (ENSXETG00000046883) #21	actr3 (ENSXETG00000015291) #22	dpp10 (ENSXETG00000000625) #24	ccdc93 (ENSXETG00000014940) #25	insig2 (ENSXETG00000041409) #26	ENSXETG00000043053	en1 (ENSXETG00000046176) #27	ENSXETG00000048132	ENSXETG00000047501 #29	ENSXETG00000044865 #28	steap3 (ENSXETG00000033379) #30	c2orf76 (ENSXETG00000049047) #31	dbi (ENSXETG00000045826) ##32	tmem37 (ENSXETG00000042949) #33	SCTR (ENSXETG00000040455) #34	cfap221 (ENSXETG00000046793) #35	esyt3 (ENSXETG00000042276)
Anura	ANCESTRAL SPECIES																	ENSGT00940000155065.d #22
Leishan spiny toad	MODERN SPECIES	2	ENSLLEG00000011030	NECTIN1 (ENSLLEG00000010764)	ENSLLEG00000010704	ENSLLEG00000010666	OAF (ENSLLEG00000010619)	ENSLLEG00000010598	ENSLLEG00000010573	ENSLLEG00000010557	PHLDB1 (ENSLLEG00000008912)	TREH (ENSLLEG00000008429)	ENSLLEG00000019813	ENSLLEG00000019774	ENSLLEG00000019748	CXCR5 (ENSLLEG00000019695)	BCL9L (ENSLLEG00000019610)	ENSLLEG00000019555 #22	ENSLLEG00000019528	ENSLLEG00000019509	ENSLLEG00000019408	ENSLLEG00000019346	CENATAC (ENSLLEG00000019043)	ENSLLEG00000018915	ENSLLEG00000018876	ENSLLEG00000018785	TRAPPC4 (ENSLLEG00000018702)	ENSLLEG00000018680	SLC37A4 (ENSLLEG00000018580)	ENSLLEG00000017664	VPS11 (ENSLLEG00000017191)	KMT2A (ENSLLEG00000015751)	ENSLLEG00000015642
Coelacanth	MODERN SPECIES	1152														GPR39 (ENSLACG00000003819)	SLC35F5 (ENSLACG00000005843) #21	ACTR3 (ENSLACG00000007136) #22
Actinopterygii	ANCESTRAL SPECIES	123			ENSGT01090000259987.b.b.a.b	ENSGT00710000106813.A	ENSGT00940000160130	ENSGT00940000157406	ENSGT00930000151029	ENSGT00940000164835	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00390000008796	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.B ##23	ENSGT00680000100037 #24	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.a.b ##32	ENSGT00940000161072	ENSGT00390000009029	ENSGT00390000007364	ENSGT00940000158837	ENSGT00940000154311.a.b
Reedfish	MODERN SPECIES	16	itgb5 (ENSECRG00000009021)	ENSECRG00000009008	slc12a8 (ENSECRG00000008989)	znf148 (ENSECRG00000008976)	ENSECRG00000008959	snx4 (ENSECRG00000008942)	ENSECRG00000008926	OSBPL11 (ENSECRG00000008894)	gpd1c (ENSECRG00000008861)	LMLN (ENSECRG00000008805)	ENSECRG00000008763	LYPD1 (ENSECRG00000008751)	ENSECRG00000008745	gpr39 (ENSECRG00000008737)	SLC35F5 (ENSECRG00000008709) #21	actr3 (ENSECRG00000008686) #22	ENSECRG00000008672	ENSECRG00000008627 ##23	ENSECRG00000008596	ENSECRG00000008437 ##23	ddx18 (ENSECRG00000008365) #24	ccdc93 (ENSECRG00000008345) #25	insig2 (ENSECRG00000008313) #26	en1b (ENSECRG00000008287) #27	ENSECRG00000008264	C1QL2 (ENSECRG00000008247) #29	ENSECRG00000008238	STEAP3 (ENSECRG00000008230) #30	zgc:101851 (ENSECRG00000008209) #31	dbi (ENSECRG00000008196) #32	VPS13D (ENSECRG00000008075)
Neopterygii	ANCESTRAL SPECIES	1	ENSGT00390000012204	ENSGT00940000157201	ENSGT01090000259987.b.b.a.b	ENSGT00710000106813.A	ENSGT00940000160130	ENSGT00940000157406	ENSGT00930000151029.i.a	ENSGT00940000164835	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00390000008796	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.A ##23	ENSGT00940000154657.B ##23	ENSGT00680000100037 #24	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b #30	ENSGT00390000015352 #31	ENSGT00940000154846.a.b ##32	ENSGT00390000009029	ENSGT00390000007364	ENSGT00940000158837	ENSGT00940000154311.a.b
Spotted gar	MODERN SPECIES	650	rif1 (ENSLOCG00000002657)	tnfaip6 (ENSLOCG00000002695)	itgb5 (ENSLOCG00000002706)	heg1 (ENSLOCG00000002732)	slc12a8 (ENSLOCG00000002752)	znf148 (ENSLOCG00000002769)	snx4 (ENSLOCG00000002790)	ENSLOCG00000002813	OSBPL11 (ENSLOCG00000002826)	gpd1c (ENSLOCG00000002845)	LMLN (ENSLOCG00000002877)	NCKAP5 (ENSLOCG00000002895)	LYPD1 (ENSLOCG00000002923)	gpr39 (ENSLOCG00000002937)	SLC35F5 (ENSLOCG00000002955) #21	actr3 (ENSLOCG00000002976) #22	ENSLOCG00000002992 ##23	ENSLOCG00000003049 ##23	ddx18 (ENSLOCG00000003108) #24	ENSLOCG00000003129	ccdc93 (ENSLOCG00000003144) #25	insig2 (ENSLOCG00000003172) #26	en1b (ENSLOCG00000003193) #27	ENSLOCG00000003213 #28	C1QL2 (ENSLOCG00000003228) #29	STEAP3 (ENSLOCG00000003240) #30	zgc:101851 (ENSLOCG00000003255) #31	dbi (ENSLOCG00000003268) #32	tmem37 (ENSLOCG00000003281) #33	SCTR (ENSLOCG00000003294) #34	CFAP221 (ENSLOCG00000003308) #35
Osteoglossocephalai	ANCESTRAL SPECIES	223										ENSGT00930000151029.i.b	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.A ##23	ENSGT00940000154657.B ##23	ENSGT00680000100037 #24	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811 #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b #29	ENSGT00390000008042.A.b.d #30	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00390000008042.A.b.c #30	ENSGT00390000015352 #31	ENSGT00940000154846.a.b ##32	ENSGT00940000160618 #34
Osteoglossiformes	ANCESTRAL SPECIES	414												ENSGT00530000063607.b.j.a	ENSGT00390000002215	ENSGT01100000263518.A.a.b.nb	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.A ##23	ENSGT00940000154657.B ##23	ENSGT00680000100037 #24	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26
Asian bonytongue	MODERN SPECIES		ENSSFOG00015028359	faima (ENSSFOG00015025478)	ENSSFOG00015032158	znf148 (ENSSFOG00015024762)	SNX4 (ENSSFOG00015022755)	gpd1c (ENSSFOG00015022733)	ENSSFOG00015022704	LYPD1 (ENSSFOG00015022686)	ENSSFOG00015022676	gpr39 (ENSSFOG00015027257)	SLC35F5 (ENSSFOG00015027844) #21	LYPD1 (ENSSFOG00015026632)	ENSSFOG00015029033	gpr39 (ENSSFOG00015022669)	SLC35F5 (ENSSFOG00015022658) #21	actr3 (ENSSFOG00015022647) #22	ENSSFOG00015022612 ##23	ENSSFOG00015022573 ##23	ddx18 (ENSSFOG00015029658) #24	ccdc93 (ENSSFOG00015024988) #25	INSIG2 (ENSSFOG00015028296) #26	ENSSFOG00015028367	ENSSFOG00015006650	ENSSFOG00015029379	ENSSFOG00015006638	ENSSFOG00015030581	LRRC24 (ENSSFOG00015006665)	THEM6 (ENSSFOG00015006698)	THEM6 (ENSSFOG00015031535)	EEF1D (ENSSFOG00015006740)	ARHGAP39 (ENSSFOG00015006826)
P. kingsleyae	DUPLICATION
P. kingsleyae	MODERN SPECIES	406	tsn (ENSPKIG00000002005)	iqcb1 (ENSPKIG00000001976)	cryl1 (ENSPKIG00000001934)	ENSPKIG00000001894	ENSPKIG00000001869	hsd3b2 (ENSPKIG00000001764)	ENSPKIG00000001697	ENSPKIG00000001648	HECW2 (ENSPKIG00000001547)	RSPH1 (ENSPKIG00000001483)	vps16 (ENSPKIG00000001377)	faima (ENSPKIG00000001313)	LYPD1 (ENSPKIG00000001280)	gpr39 (ENSPKIG00000001251)	SLC35F5 (ENSPKIG00000001198) #21	actr3 (ENSPKIG00000001149) #22	ddx18 (ENSPKIG00000001118) #24	ccdc93 (ENSPKIG00000001052) #25	INSIG2 (ENSPKIG00000000966) #26
P. kingsleyae	MODERN SPECIES	321	znf148 (ENSPKIG00000016467)	SNX4 (ENSPKIG00000016386)	ENSPKIG00000016339	OSBPL11 (ENSPKIG00000016298)	si:dkey-261m9.17 (ENSPKIG00000016283)	ENSPKIG00000016262	ENSPKIG00000016216	zgc:173585 (ENSPKIG00000016202)	ENSPKIG00000016185	ENSPKIG00000016149	LMLN (ENSPKIG00000016041)	ENSPKIG00000015993	LYPD1 (ENSPKIG00000015979)	ENSPKIG00000015964	gpr39 (ENSPKIG00000015956)	actr3 (ENSPKIG00000015889) #22	ENSPKIG00000015854	ENSPKIG00000015790 ##23	EN1 (ENSPKIG00000015747) #27
Clupeocephala	ANCESTRAL SPECIES	289											ENSGT00530000063607.b.j.a	ENSGT00390000002215.i.a	ENSGT01100000263518.A.a.b	ENSGT00910000148192	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00680000100037 #24	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811.c.a #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b.j.b #29	ENSGT00390000008042.A.b.c #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000156402.A.b
Otomorpha	ANCESTRAL SPECIES	372													ENSGT00910000148192	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00680000100037 #24	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00990000210518	ENSGT00390000015352 #31	ENSGT00940000154846.a.b ##32	ENSGT00390000008042.A.b.c #30	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000156402.A.b
Clupeiformes	ANCESTRAL SPECIES	497																ENSGT00940000155065 #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00680000100037 #24	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000156913.b.j.b #29	ENSGT00940000170561.a.b
Atlantic herring	MODERN SPECIES	7	pacsin2 (ENSCHAG00000000898)	arfgap3 (ENSCHAG00000001497)	ENSCHAG00000001748	uhrf1bp1l (ENSCHAG00000002645)	ENSCHAG00000005835	anks1b (ENSCHAG00000005896)	apaf1 (ENSCHAG00000006477)	ENSCHAG00000007246	tcp11l2 (ENSCHAG00000007262)	ENSCHAG00000007282	SNX4 (ENSCHAG00000007306)	gpd1c (ENSCHAG00000008081)	NCKAP5 (ENSCHAG00000008112)	LYPD1 (ENSCHAG00000008181)	ENSCHAG00000008214	actr3 (ENSCHAG00000008265) #22	ENSCHAG00000009443 ##23	nudt5 (ENSCHAG00000011212)	ints2 (ENSCHAG00000011238)	ENSCHAG00000011510	pthlha (ENSCHAG00000011515)	ENSCHAG00000011521	ENSCHAG00000011529	lrp6 (ENSCHAG00000011581)	dusp16 (ENSCHAG00000013968)	crebl2 (ENSCHAG00000013974)	gpr19 (ENSCHAG00000013997)	tbk1 (ENSCHAG00000014015)	eps8a (ENSCHAG00000014301)	PTPRO (ENSCHAG00000014426)	si:cabz01085950.1 (ENSCHAG00000015370)
Denticle herring	MODERN SPECIES	12	ENSDCDG00000028334	slc9a3.1 (ENSDCDG00000028338)	ago3b (ENSDCDG00000028648)	olah (ENSDCDG00000031575)	tekt2 (ENSDCDG00000031577)	ENSDCDG00000031582	ENSDCDG00000031587	ENSDCDG00000031590	ENSDCDG00000031594	ENSDCDG00000031598	slc52a2 (ENSDCDG00000031600)	nfatc1 (ENSDCDG00000031606)	atp9b (ENSDCDG00000031729)	ENSDCDG00000033488	ENSDCDG00000033491	actr3 (ENSDCDG00000033512) #22	ENSDCDG00000033821 ##23	ENSDCDG00000034555 ##23	ddx18 (ENSDCDG00000034704) #24	ccdc93 (ENSDCDG00000034741) #25	insig2 (ENSDCDG00000034849) #26	C1QL2 (ENSDCDG00000034850) #29	ENSDCDG00000034851	dbi (ENSDCDG00000034852) ##32	rab5b (ENSDCDG00000034854)	dbr1 (ENSDCDG00000034859)	armc8 (ENSDCDG00000034867)	ENSDCDG00000035004	idh1 (ENSDCDG00000035020)	PLEKHM3 (ENSDCDG00000035092)	ENSDCDG00000035094
Otophysi	ANCESTRAL SPECIES	298													ENSGT00910000148192	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00680000100037 #24	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811.c.b #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b.j.b #29	ENSGT00940000170561.a.b	ENSGT00390000008042.A.b.c #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32	ENSGT00390000006225 #33	ENSGT00940000156402.A.b
Cyprinoidei	ANCESTRAL SPECIES	273														ENSGT00910000148192	ENSGT01100000263518.A.a.b	ENSGT00940000155065 #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23
Zebrafish	MODERN SPECIES	24													ubxn4 (ENSDARG00000100597)	ENSDARG00000098398	gpr39 (ENSDARG00000102888)	actr3 (ENSDARG00000091138) #22	rab3gap1 (ENSDARG00000098079)	lcp1 (ENSDARG00000023188)	cnot11 (ENSDARG00000068596)	rpl31 (ENSDARG00000053365)	TBC1D8 (ENSDARG00000104493)	edar (ENSDARG00000099088)	SH3RF3 (ENSDARG00000102334)	septin10 (ENSDARG00000099236)	ENSDARG00000112547	SOWAHC (ENSDARG00000098790)	akap17a (ENSDARG00000104768)	asmt (ENSDARG00000098249)	ARSD (ENSDARG00000002299)	MXRA5 (ENSDARG00000076309)	nlgn4xb (ENSDARG00000077761)
Cyprininae	ANCESTRAL SPECIES	703						ENSGT00510000049213.a	ENSGT00950000183030.a	ENSGT00390000006356	ENSGT00950000183097.a.a.b.e	ENSGT00390000006705.d	ENSGT00940000160205.e.a	ENSGT00940000165390.a	ENSGT00530000063686.a.a	ENSGT00910000148192	ENSGT01100000263518.A.a.b	ENSGT00940000155065 #22	ENSGT00940000154657.A.c.a ##23
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	27	ENSCARG00000012224	PDCL3 (ENSCARG00000012230)	ENSCARG00000012284	ENSCARG00000012802	rpl31 (ENSCARG00000012805)	lcp1 (ENSCARG00000012883)	ENSCARG00000013774	ENSCARG00000013789	ENSCARG00000013819	ENSCARG00000013837	UBXN4 (ENSCARG00000013842)	ENSCARG00000013865	ENSCARG00000013874	ENSCARG00000013881	gpr39 (ENSCARG00000013883)	actr3 (ENSCARG00000013924) #22	DPP10 (ENSCARG00000014284) ##23	ENSCARG00000016756	znf385b (ENSCARG00000016761)	sestd1 (ENSCARG00000016790)	ENSCARG00000016882	ENSCARG00000016960	ENSCARG00000016985	ENSCARG00000017049	ENSCARG00000017064	ENSCARG00000017088	ENSCARG00000017093	ENSCARG00000017104	fkbp7 (ENSCARG00000017123)	COL5A2 (ENSCARG00000017191)	gulp1a (ENSCARG00000017695)
Goldfish	MODERN SPECIES	49	ENSCARG00000000844	ENSCARG00000000860	ENSCARG00000000873	ENSCARG00000000877	ENSCARG00000000884	ENSCARG00000000887	ENSCARG00000000888	rpl31 (ENSCARG00000000898)	cnot11 (ENSCARG00000000909)	lcp1 (ENSCARG00000001057)	rab3gap1 (ENSCARG00000001496)	UBXN4 (ENSCARG00000001525)	ENSCARG00000001528	ENSCARG00000001531	ENSCARG00000001538	actr3 (ENSCARG00000001585) #22	ENSCARG00000001710 ##23	ENSCARG00000001779	ENSCARG00000001796	ANOS1 (ENSCARG00000001835)	tbl1x (ENSCARG00000001903)	GPR143 (ENSCARG00000001924)	ENSCARG00000001991	mospd2 (ENSCARG00000002044)	FANCB (ENSCARG00000002218)	glra2 (ENSCARG00000002241)	gpm6bb (ENSCARG00000002382)	ofd1 (ENSCARG00000002472)	TRAPPC2B (ENSCARG00000002489)	rab9a (ENSCARG00000002498)	ENSCARG00000002504
Cyprininae_a	ANCESTRAL SPECIES	1055																ENSGT00940000155065 #22	ENSGT00940000154657.A.c.a ##23
Common carp reference	DUPLICATION
Common carp reference	MODERN SPECIES	41	edar (ENSCCRG00000001782)	rpl31 (ENSCCRG00000069862)	ENSCCRG00000064926	ENSCCRG00000075062	TBC1D8 (ENSCCRG00000078121)	lcp1 (ENSCCRG00000027206)	ENSCCRG00000082855	ENSCCRG00000053966	ENSCCRG00000039395	ENSCCRG00000068826	ENSCCRG00000015008	ENSCCRG00000035475	ENSCCRG00000035481	ENSCCRG00000053984	ENSCCRG00000035471	actr3 (ENSCCRG00000079808) #22	ENSCCRG00000057438 ##23	ENSCCRG00000064941 ##23
Common carp reference	MODERN SPECIES	46	ENSCCRG00000057531	ENSCCRG00000066334	septin10 (ENSCCRG00000060110)	ENSCCRG00000057915	edar (ENSCCRG00000082034)	ENSCCRG00000079555	ENSCCRG00000056262	ENSCCRG00000001857	cnot11 (ENSCCRG00000001771)	rpl31 (ENSCCRG00000001807)	lcp1 (ENSCCRG00000081066)	ENSCCRG00000057647	rab3gap1 (ENSCCRG00000037810)	ENSCCRG00000081046	ENSCCRG00000035445	ENSCCRG00000035427 #22	ENSCCRG00000023923 ##23	ENSCCRG00000082376
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	1300								rab3gap1 (ENSSGRG00000010835)	ENSSGRG00000011237	ENSSGRG00000011241	ubxn4 (ENSSGRG00000011243)	ENSSGRG00000011244	ENSSGRG00000011247	ENSSGRG00000011250	gpr39 (ENSSGRG00000011253)	ACTR3 (ENSSGRG00000011290) #22	ENSSGRG00000012328 ##23
Golden-line barbel	MODERN SPECIES	2906																actr3 (ENSSGRG00000004274) #22
Characiphysae	ANCESTRAL SPECIES	3	ENSGT00950000183019.f.b.b.c	ENSGT00940000159069	ENSGT00530000063873.B	ENSGT00940000156552.c.a	ENSGT00940000156089.f	ENSGT00390000005159.i	ENSGT00940000156444.d	ENSGT00940000155861.C.f	ENSGT00940000158239.a.a.c	ENSGT00940000158239.a.b	ENSGT00390000013916	ENSGT00950000183046.a.a.fb	ENSGT00940000156449.a	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00680000100037 #24	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811.c.b #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b.j.b #29	ENSGT01030000235195	ENSGT00940000163460.c	ENSGT01060000248784	ENSGT00940000170561.a.b	ENSGT00390000008042.A.b.c #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32
Channel catfish	MODERN SPECIES	25	ENSIPUG00000011119	ENSIPUG00000011147	ttll4 (ENSIPUG00000011178)	prkag3b (ENSIPUG00000011296)	FER1L6 (ENSIPUG00000011610)	ENSIPUG00000011861	raph1 (ENSIPUG00000011891)	abi2a (ENSIPUG00000012006)	tmem237a (ENSIPUG00000012105)	ALS2 (ENSIPUG00000012149)	fzd7a (ENSIPUG00000012373)	fam117b (ENSIPUG00000012389)	Bmpr2 (ENSIPUG00000012409)	gpr39 (ENSIPUG00000012486)	slc35f5 (ENSIPUG00000012504) #21	actr3 (ENSIPUG00000012560) #22	ENSIPUG00000012623 ##23	ENSIPUG00000012829 ##23	ddx18 (ENSIPUG00000012876)	ccdc93 (ENSIPUG00000012974) #25	insig2 (ENSIPUG00000013001) #26	en1 (ENSIPUG00000013029) #27	ENSIPUG00000013048	c1ql2 (ENSIPUG00000013069) #29	ENSIPUG00000013085	ENSIPUG00000013095	steap3 (ENSIPUG00000013110) #30	c6h2orf76 (ENSIPUG00000013121) #31	dbi (ENSIPUG00000013139) #32	tmem37 (ENSIPUG00000013155) #33	sctr (ENSIPUG00000013182)
Characiphysae_b	ANCESTRAL SPECIES	11	ENSGT00950000183019.f.b.b.c	ENSGT00940000159069	ENSGT00530000063873.B	ENSGT00940000156552.c.a	ENSGT00940000156089.f	ENSGT00390000005159.i	ENSGT00940000156444.d	ENSGT00940000155861.C.f	ENSGT00940000158239.a.a.c	ENSGT00940000158239.a.b	ENSGT00390000013916	ENSGT00950000183046.a.a.fb	ENSGT00940000156449.a	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00680000100037 #24	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811.c.b #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b.j.b #29	ENSGT01030000235195	ENSGT00940000163460.c.a	ENSGT01060000248784	ENSGT00940000170561.a.b	ENSGT00390000008042.A.b.c #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32
Electric eel	MODERN SPECIES	176		ENSEEEG00000018942	prkag3b (ENSEEEG00000018996)	ENSEEEG00000019024	FER1L6 (ENSEEEG00000019025)	ENSEEEG00000019026	RAPH1 (ENSEEEG00000019030)	abi2a (ENSEEEG00000019071)	ALS2 (ENSEEEG00000019074)	fzd7a (ENSEEEG00000019075)	ENSEEEG00000019076	fam117bb (ENSEEEG00000019078)	bmpr2b (ENSEEEG00000019083)	gpr39 (ENSEEEG00000019087)	SLC35F5 (ENSEEEG00000019095) #21	actr3 (ENSEEEG00000019121) #22	ENSEEEG00000019395 ##23	ENSEEEG00000019404 ##23	ENSEEEG00000019405	ENSEEEG00000019406	zgc:113337 (ENSEEEG00000019407)	CFAP91 (ENSEEEG00000019408)	nr1i2 (ENSEEEG00000019417)	gsk3ba (ENSEEEG00000019444)	GPR156 (ENSEEEG00000019446)	LRRC58 (ENSEEEG00000019447)	fstl1b (ENSEEEG00000019448)
Characoidei	ANCESTRAL SPECIES	1	ENSGT00940000157916	ENSGT00950000183019.f.b.b.c	ENSGT00940000159069	ENSGT00530000063873.B	ENSGT00940000156552.c.a	ENSGT00940000156089.f	ENSGT00390000005159.i	ENSGT00940000156444.d	ENSGT00940000155861.C.f	ENSGT00940000158239.a.a.c	ENSGT00390000013916	ENSGT00950000183046.a.a.fb	ENSGT00940000156449.a	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00680000100037 #24	ENSGT00390000011294 #25	ENSGT00580000081600.c.b #26	ENSGT00940000160811.c.b #27	ENSGT00950000183074.C #28	ENSGT00940000156913.b.j.b #29	ENSGT01030000235195	ENSGT00940000163460.c.a	ENSGT01060000248784	ENSGT00940000170561.a.b	ENSGT00390000008042.A.b.c #30	ENSGT00390000015352 #31	ENSGT00940000154846.b #32
Mexicana tetra	MODERN SPECIES	10	FER1L6 (ENSAMXG00000016740)	ENSAMXG00000043077	RAPH1 (ENSAMXG00000016673)	abi2a (ENSAMXG00000041989)	tmem237a (ENSAMXG00000002221)	MPP4 (ENSAMXG00000002002)	ENSAMXG00000001777	ALS2 (ENSAMXG00000001685)	FZD7 (ENSAMXG00000024305)	ENSAMXG00000043514	CARF (ENSAMXG00000024302)	fam117bb (ENSAMXG00000024297)	bmpr2b (ENSAMXG00000024291)	gpr39 (ENSAMXG00000036048)	SLC35F5 (ENSAMXG00000024287) #21	actr3 (ENSAMXG00000024286) #22	ENSAMXG00000024284 ##23	ENSAMXG00000024272 ##23	ENSAMXG00000041658	ENSAMXG00000033643	ENSAMXG00000037342	ddx18 (ENSAMXG00000024269) #24	ccdc93 (ENSAMXG00000024268) #25	insig2 (ENSAMXG00000041946) #26	en1a (ENSAMXG00000044032) #27	ENSAMXG00000024263	C1QL2 (ENSAMXG00000031667) #29	ENSAMXG00000037026	ENSAMXG00000024261	ENSAMXG00000024880	ENSAMXG00000041756
Red-bellied piranha	MODERN SPECIES	22										FZD7 (ENSPNAG00000024668)	ENSPNAG00000024653	fam117bb (ENSPNAG00000005491)	bmpr2b (ENSPNAG00000024607)	gpr39 (ENSPNAG00000004962)	SLC35F5 (ENSPNAG00000024533) #21	actr3 (ENSPNAG00000024434) #22	ENSPNAG00000024385 ##23	ENSPNAG00000024306 ##23	ENSPNAG00000024274	ddx18 (ENSPNAG00000024239) #24	ccdc93 (ENSPNAG00000024210) #25	insig2 (ENSPNAG00000024171) #26	en1a (ENSPNAG00000024127) #27	ENSPNAG00000004764 #28	C1QL2 (ENSPNAG00000024092) #29	ENSPNAG00000024035	ENSPNAG00000024025	ENSPNAG00000024015	ENSPNAG00000006248	STEAP3 (ENSPNAG00000023982) #30	zgc:101851 (ENSPNAG00000005749) #31
Euteleosteomorpha	ANCESTRAL SPECIES	196	ENSGT00530000063564.b.a.b	ENSGT00940000158493	ENSGT00390000004145.b	ENSGT00390000016484	ENSGT00940000155466.e.b	ENSGT00940000154014.b.b	ENSGT00390000005550	ENSGT00390000005581.b	ENSGT00530000063607.b.j.a	ENSGT01030000234565.a.b	ENSGT00390000002215.i.a	ENSGT00970000197574	ENSGT00910000148192	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065 #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00680000100037 #24
Acanthomorphata	ANCESTRAL SPECIES	158	ENSGT00940000155408.o.b	ENSGT00940000155235.k.b	ENSGT00940000165586.b	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00930000151029.i.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065 #22	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981
Cod	DUPLICATION
Cod	MODERN SPECIES	17	ENSGMOG00000011286	ENSGMOG00000037128	ENSGMOG00000027977	ENSGMOG00000031293	ENSGMOG00000026081	ENSGMOG00000005378	ENSGMOG00000034018	ENSGMOG00000034147	ENSGMOG00000033822	ENSGMOG00000025299	ENSGMOG00000029542	ENSGMOG00000026758	ENSGMOG00000024588	ENSGMOG00000033374	ENSGMOG00000030623	ENSGMOG00000002043 #22	ENSGMOG00000023951	ENSGMOG00000029211	mrps9 (ENSGMOG00000032381)	ENSGMOG00000031908	ENSGMOG00000035288	ENSGMOG00000003871	ENSGMOG00000033154	ENSGMOG00000028121	ENSGMOG00000030346	ENSGMOG00000035856	ENSGMOG00000034015	ENSGMOG00000025152	ENSGMOG00000031279	ENSGMOG00000030149	ENSGMOG00000023691
Cod	MODERN SPECIES	8	ENSGMOG00000013884	ENSGMOG00000013808	ENSGMOG00000013751	ENSGMOG00000017918	ENSGMOG00000032481	ENSGMOG00000031330	ENSGMOG00000027264	ENSGMOG00000028116	ENSGMOG00000034050	ENSGMOG00000034310	ENSGMOG00000003166	ENSGMOG00000033164	ENSGMOG00000007095	ENSGMOG00000007101	ddx18 (ENSGMOG00000007113) #24	ENSGMOG00000007121 #22	ENSGMOG00000022609	ENSGMOG00000000375	ENSGMOG00000034565	ENSGMOG00000024834	ENSGMOG00000023998	ENSGMOG00000001552 ##23	ENSGMOG00000001593 ##23	ENSGMOG00000000682	COL6A3 (ENSGMOG00000000721)	ENSGMOG00000034817	ENSGMOG00000029886	ENSGMOG00000026452	ENSGMOG00000036911	ENSGMOG00000033501	ENSGMOG00000034028
Euacanthomorphacea	DUPLICATION
Euacanthomorphacea	DUPLICATION
Euacanthomorphacea	ANCESTRAL SPECIES	43	ENSGT00730000111249	ENSGT00940000155868.f	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.yb #22	ENSGT00940000155065.xb.a #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166277	ENSGT00940000166042.b	ENSGT00940000171532	ENSGT00940000156462.B.d	ENSGT00940000156462.B.c.a.b.b	ENSGT00940000156462.B.c.a.a	ENSGT00940000156462.C.`b.a	ENSGT00950000183138.a.b.r.b	ENSGT00940000177438	ENSGT00940000161839	ENSGT00530000063564.b.b.b	ENSGT00530000063564.b.a.b	ENSGT00940000158493
Percomorphaceae	ANCESTRAL SPECIES	43	ENSGT00940000177543	ENSGT00730000111249	ENSGT00940000155868.f	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.xb.a #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166277	ENSGT00940000166042.b	ENSGT00940000171532	ENSGT00940000156462.B.d	ENSGT00940000156462.B.c.a.b.b	ENSGT00940000156462.B.c.a.a	ENSGT00940000156462.C.`b.a	ENSGT00940000156462.C.ab	ENSGT00940000156462.B.c.b	ENSGT00940000156462.A	ENSGT00950000183138.a.b.r.b	ENSGT00940000177438	ENSGT00940000161839
Tiger tail seahorse	MODERN SPECIES	410				ENSHCOG00000008067	gtpbp8 (ENSHCOG00000008055)	slc10a2 (ENSHCOG00000008037)	ENSHCOG00000008018	inhbb (ENSHCOG00000007994)	gli2a (ENSHCOG00000007969)	clasp1a (ENSHCOG00000007772)	nifk (ENSHCOG00000007721)	ENSHCOG00000007707	ENSHCOG00000007672	zgc:172295 (ENSHCOG00000007649)	ddx18 (ENSHCOG00000007568) #24	actr3 (ENSHCOG00000007540) #22	ENSHCOG00000007506 ##23
Percomorphaceae_B	ANCESTRAL SPECIES	17	ENSGT00940000177543	ENSGT00730000111249	ENSGT00940000155868.f	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.xb.a #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166042.b	ENSGT00940000166277	ENSGT00940000171532	ENSGT00940000156462.B.d	ENSGT00940000156462.B.c.b	ENSGT00940000156462.A	ENSGT01070000254188	ENSGT00940000156462.B.c.a.b.b	ENSGT00940000156462.B.c.a.a	ENSGT00940000156462.C.`b.a	ENSGT00950000183138.a.b.r.b	ENSGT00940000177438	ENSGT00940000161839
Ovalentaria	ANCESTRAL SPECIES	14	ENSGT00390000015050.`b.a	ENSGT00730000111249	ENSGT00940000155868.f	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.xb.a #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166042.b	ENSGT00940000166277	ENSGT00940000171532	ENSGT01070000254188	ENSGT00940000156462.B.d	ENSGT00940000156462.B.c.a.b.b	ENSGT00940000156462.B.c.a.a	ENSGT00940000156462.C.`b.a	ENSGT00940000156462.C.ab	ENSGT00940000156462.B.c.b	ENSGT00940000156462.A	ENSGT00950000183138.a.b.r.b	ENSGT00940000177438
Ovalentaria_B	ANCESTRAL SPECIES	12	ENSGT00940000155868.f	ENSGT00990000210091	ENSGT00960000187045	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.xb.a #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166277	ENSGT00940000166042.b	ENSGT00940000171532	ENSGT01070000254188	ENSGT00940000156462.B.c.a.b.b	ENSGT00940000156462.B.c.a.a	ENSGT00940000156462.C.`b.a	ENSGT00940000156462.B.c.b	ENSGT00940000156462.A	ENSGT00950000183138.a.b.r.b	ENSGT00940000177438	ENSGT00940000161839	ENSGT00530000063564.b.b.b
Pomacentridae	ANCESTRAL SPECIES	51		ENSGT00730000111249	ENSGT00940000155868.f	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.xb.a #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166277	ENSGT00940000156462.B.c.a.b.b	ENSGT00940000156462.B.c.b	ENSGT00940000156462.B.c.a.a	ENSGT00940000156462.A	ENSGT00950000183138.a.b.r.b	ENSGT00940000177438	ENSGT00940000161839	ENSGT00530000063564.b.a.b	ENSGT00530000063564.b.b.b	ENSGT00940000158493	ENSGT00390000004145.b	ENSGT00390000016484
Bicolor damselfish	MODERN SPECIES	1097										tsn (ENSSPAG00000009283)	FAM124A (ENSSPAG00000009316)	serpine3 (ENSSPAG00000009327)	ints6 (ENSSPAG00000009350)	wdfy2 (ENSSPAG00000009429)	dhrs12 (ENSSPAG00000009463)	actr3 (ENSSPAG00000009503) #22
Pomacentridae_A	ANCESTRAL SPECIES	52												ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.xb.a #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166277	ENSGT00940000156462.B.c.a.b.b	ENSGT00940000156462.B.c.b	ENSGT00940000156462.B.c.a.a	ENSGT00940000156462.A	ENSGT00950000183138.a.b.r.b	ENSGT00940000177438	ENSGT00940000161839	ENSGT00530000063564.b.b.b	ENSGT00940000158493	ENSGT00390000004145.b	ENSGT00390000016484	ENSGT00940000155466.e.b
Amphiprion	ANCESTRAL SPECIES	52	ENSGT00950000182837.b.b.c.a	ENSGT00940000154714	ENSGT00940000154533.a.a.a	ENSGT00940000154533.b.b.b	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00440000033329.b.a.a	ENSGT00940000155063.a.a	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.xb.a #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166277	ENSGT00940000156462.B.c.a.b.b	ENSGT00940000156462.B.c.b	ENSGT00940000156462.B.c.a.a	ENSGT00940000156462.A	ENSGT00950000183138.a.b.r.b	ENSGT00940000177438	ENSGT00940000161839	ENSGT00530000063564.b.b.b	ENSGT00940000158493	ENSGT00390000004145.b	ENSGT00390000016484	ENSGT00940000155466.e.b
Clown anemonefish	MODERN SPECIES	582	CACNB4 (ENSAOCG00000013774)	arl5a (ENSAOCG00000013722)	NEB (ENSAOCG00000000858)	ENSAOCG00000013239	TBC1D8 (ENSAOCG00000013192)	PDCL3 (ENSAOCG00000013097)	ENSAOCG00000013088	ENSAOCG00000013069	ENSAOCG00000013000	ENSAOCG00000012747	ENSAOCG00000012721	nifk (ENSAOCG00000012662)	ENSAOCG00000012613	zgc:172295 (ENSAOCG00000012545)	ddx18 (ENSAOCG00000012438) #24	actr3 (ENSAOCG00000012415) #22	ENSAOCG00000012369
Orange clownfish	MODERN SPECIES	3	CACNB4 (ENSAPEG00000000953)	arl5a (ENSAPEG00000000995)	NEB (ENSAPEG00000001049)	ENSAPEG00000001640	TBC1D8 (ENSAPEG00000001672)	PDCL3 (ENSAPEG00000001738)	ENSAPEG00000001752	ENSAPEG00000001771	ENSAPEG00000001809	ENSAPEG00000002031	ENSAPEG00000002087	nifk (ENSAPEG00000002123)	ENSAPEG00000002198	zgc:172295 (ENSAPEG00000002279)	ddx18 (ENSAPEG00000002348) #24	actr3 (ENSAPEG00000002368) #22	ENSAPEG00000002424	ENSAPEG00000002490 ##23	ENSAPEG00000002557 ##23	cops8 (ENSAPEG00000002579)	COL6A3 (ENSAPEG00000002655)	ENSAPEG00000002754	ENSAPEG00000002799	ENSAPEG00000002834	MLPH (ENSAPEG00000002873)	RAB17 (ENSAPEG00000002915)	ENSAPEG00000002932	tyw5 (ENSAPEG00000002972)	maip1 (ENSAPEG00000003003)	PGAP1 (ENSAPEG00000003029)	HECW2 (ENSAPEG00000003193)
Spiny chromis	MODERN SPECIES	1850													ENSAPOG00000018973	zgc:172295 (ENSAPOG00000019011)	ddx18 (ENSAPOG00000019022) #24	actr3 (ENSAPOG00000019097) #22
Cichlidae	ANCESTRAL SPECIES	14	ENSGT00940000154817.b.a	ENSGT00940000159158	ENSGT00390000013973.A.a.c.a	ENSGT00940000159213.q.a	ENSGT00940000159862.a	ENSGT00940000165735	ENSGT00950000182808.a.a.a.a.a	ENSGT00390000001083	ENSGT00960000187045	ENSGT00940000155868.f	ENSGT00730000111249	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.xb.a #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166277	ENSGT00940000166042.b	ENSGT00940000171532	ENSGT01070000254188	ENSGT00940000156462.B.c.a.b.b	ENSGT00940000156462.B.c.b	ENSGT00940000156462.B.c.a.a	ENSGT00940000156462.A	ENSGT00940000156462.C.`b.a	ENSGT00950000183138.a.b.r.b	ENSGT00940000177438	ENSGT00940000161839	ENSGT00530000063564.b.b.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	15	ENSGT00910000144271.C.b	ENSGT00940000154817.b.a	ENSGT00940000159158	ENSGT00390000013973.A.a.c.a	ENSGT00940000159862.a	ENSGT00940000165735	ENSGT00950000182808.a.a.a.a.a	ENSGT00390000001083	ENSGT00960000187045	ENSGT00940000155868.f	ENSGT00730000111249	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.xb.a #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166277	ENSGT00940000171532	ENSGT01070000254188	ENSGT00940000156462.B.c.a.b.b	ENSGT00940000156462.B.c.a.a	ENSGT00940000156462.B.c.b	ENSGT00940000156462.A	ENSGT00940000156462.C.`b.a	ENSGT00950000183138.a.b.r.b	ENSGT00940000177438	ENSGT00940000161839	ENSGT00530000063564.b.b.b	ENSGT00530000063564.b.a.b.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	14	ENSGT00940000154817.b.a	ENSGT00940000159158	ENSGT00390000013973.A.a.c.a	ENSGT00940000159862.a	ENSGT00940000165735	ENSGT00950000182808.a.a.a.a.a	ENSGT00390000001083	ENSGT00960000187045	ENSGT00940000155868.f	ENSGT00730000111249	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.yb.b #22	ENSGT00940000155065.xb.a #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166277	ENSGT00940000171532	ENSGT01070000254188	ENSGT00940000156462.B.c.a.b.b.h	ENSGT00940000156462.B.c.a.a	ENSGT00940000156462.B.c.b	ENSGT00940000156462.A	ENSGT00940000156462.C.`b.a	ENSGT00950000183138.a.b.r.b	ENSGT00940000177438	ENSGT00940000161839	ENSGT00530000063564.b.b.b	ENSGT00530000063564.b.a.b.a
Haplochromini	ANCESTRAL SPECIES	19	ENSGT00940000154817.b.a	ENSGT00940000159158	ENSGT00390000013973.A.a.c.a	ENSGT00940000159862.a	ENSGT00940000165735	ENSGT00950000182808.a.a.a.a.a.o.b	ENSGT00950000182808.a.a.a.a.a.o.a	ENSGT00390000001083	ENSGT00960000187045	ENSGT00940000155868.f	ENSGT00730000111249	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.xb.a #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166277	ENSGT01070000254188	ENSGT00940000156462.B.c.a.b.b.h	ENSGT00940000156462.B.c.b	ENSGT00940000156462.B.c.a.a	ENSGT00940000156462.A	ENSGT00940000156462.C.`b.a	ENSGT00950000183138.a.b.r.b	ENSGT00940000177438	ENSGT00940000161839	ENSGT00530000063564.b.b.b	ENSGT00530000063564.b.a.b.a	ENSGT00940000158493.p
Haplochromini_A	ANCESTRAL SPECIES	19	ENSGT00940000154817.b.a	ENSGT00940000159158	ENSGT00390000013973.A.a.c.a	ENSGT00940000159862.a	ENSGT00940000165735	ENSGT00950000182808.a.a.a.a.a.o.b	ENSGT00950000182808.a.a.a.a.a.o.a	ENSGT00390000001083	ENSGT00940000155868.f	ENSGT00730000111249	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.yb.b.b #22	ENSGT00940000155065.xb.a #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166277	ENSGT01070000254188	ENSGT00940000156462.B.c.a.b.b.h	ENSGT00940000156462.B.c.a.a	ENSGT00940000156462.C.`b.a	ENSGT00950000183138.a.b.r.b	ENSGT00940000177438	ENSGT00940000161839	ENSGT00530000063564.b.b.b	ENSGT00530000063564.b.a.b.a	ENSGT00940000158493.p	ENSGT00530000063564.b.a.b.b	ENSGT00940000158493.o.a
P. nyererei	MODERN SPECIES	435										efnb2a (ENSPNYG00000016257)	arglu1a (ENSPNYG00000016278)	nifk (ENSPNYG00000016315)	ENSPNYG00000016360	zgc:172295 (ENSPNYG00000016396)	ddx18 (ENSPNYG00000016437) #24	actr3 (ENSPNYG00000016473) #22	ENSPNYG00000016522 ##23	ENSPNYG00000016571 ##23	cops8 (ENSPNYG00000016623)	ENSPNYG00000016647	ENSPNYG00000016711
Burton s mouthbrooder	MODERN SPECIES	298	tfcp2l1 (ENSHBUG00000000004)	ENSHBUG00000001220	ENSHBUG00000001219	inhbb (ENSHBUG00000001218)	ENSHBUG00000001217	slc10a2 (ENSHBUG00000001216)	slc10a2 (ENSHBUG00000001215)	gtpbp8 (ENSHBUG00000001214)	ENSHBUG00000001213	efnb2a (ENSHBUG00000001212)	arglu1a (ENSHBUG00000001211)	nifk (ENSHBUG00000001209)	ENSHBUG00000001206	zgc:172295 (ENSHBUG00000001205)	ddx18 (ENSHBUG00000001204) #24	ENSHBUG00000001202 #22	ENSHBUG00000001201 ##23	ENSHBUG00000001200 ##23	cops8 (ENSHBUG00000001199)	ENSHBUG00000001198	COL6A3 (ENSHBUG00000001197)
Nile tilapia	MODERN SPECIES	7	ENSONIG00000036696	ENSONIG00000004472	inhbb (ENSONIG00000004476)	ENSONIG00000030774	slc10a2 (ENSONIG00000028469)	ENSONIG00000036900	gtpbp8 (ENSONIG00000004479)	ENSONIG00000041690	efnb2a (ENSONIG00000035334)	arglu1 (ENSONIG00000034710)	ENSONIG00000035475	nifk (ENSONIG00000042666)	ENSONIG00000040916	zgc:172295 (ENSONIG00000007888)	ddx18 (ENSONIG00000007887) #24	actr3 (ENSONIG00000007884) #22	ENSONIG00000007860 ##23	ENSONIG00000007838 ##23	cops8 (ENSONIG00000007833)	ENSONIG00000041011	ENSONIG00000039100	COL6A3 (ENSONIG00000007828)	MLPH (ENSONIG00000016771)	ENSONIG00000040656	RAB17 (ENSONIG00000016776)	ENSONIG00000016777	tyw5 (ENSONIG00000016779)	maip1 (ENSONIG00000032238)	PGAP1 (ENSONIG00000016782)	HECW2 (ENSONIG00000016784)	stk17b (ENSONIG00000016791)
Atherinomorphae	ANCESTRAL SPECIES	24	ENSGT00940000155408.o.b	ENSGT00940000155235.k.b	ENSGT00940000165586.b	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a #22	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00940000177931	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b
Cyprinodontiformes	ANCESTRAL SPECIES	26	ENSGT00940000155408.o.b	ENSGT00940000155235.k.b	ENSGT00940000165586.b	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a #22	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00940000177931	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b
Cyprinodontoidei	ANCESTRAL SPECIES	26	ENSGT00940000155408.o.b	ENSGT00940000155235.k.b	ENSGT00940000165586.b	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a #22	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00940000177931	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b
Poeciliinae	ANCESTRAL SPECIES	23	ENSGT00940000157249	ENSGT00940000155408.o.b	ENSGT00940000155235.k.b	ENSGT00940000165586.b	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a #22	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C
Poecilia	DUPLICATION
Poecilia	ANCESTRAL SPECIES	45	ENSGT00940000157249	ENSGT00940000155408.o.b	ENSGT00940000155235.k.b	ENSGT00940000165586.b	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a.a #22	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C
NAME_6	ANCESTRAL SPECIES	239									ENSGT00940000157652.s	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a.a #22	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C
Sailfin molly	MODERN SPECIES	88							acadl (ENSPLAG00000017351)	ENSPLAG00000017231	acadl (ENSPLAG00000017213)	ENSPLAG00000000390	ENSPLAG00000017178	OSBPL11 (ENSPLAG00000017155)	gpd1c (ENSPLAG00000000388)	NCKAP5 (ENSPLAG00000017102)	LYPD1 (ENSPLAG00000017090)	actr3 (ENSPLAG00000017079) #22	ENSPLAG00000017053
Amazon molly	MODERN SPECIES	309							acadl (ENSPFOG00000012140)	ENSPFOG00000012261	ENSPFOG00000012328	ENSPFOG00000023505	UNC80 (ENSPFOG00000012390)	OSBPL11 (ENSPFOG00000013280)	gpd1c (ENSPFOG00000013450)	NCKAP5 (ENSPFOG00000013527)	LYPD1 (ENSPFOG00000013617)	actr3 (ENSPFOG00000013626) #22	ENSPFOG00000013697	pou3f3b (ENSPFOG00000013701)	mrps9 (ENSPFOG00000013721)	ENSPFOG00000013825	FAM171B (ENSPFOG00000013868)	ENSPFOG00000021831	ENSPFOG00000013924	COL5A2 (ENSPFOG00000014044)	ENSPFOG00000014758	pwp2h (ENSPFOG00000014764)	eed (ENSPFOG00000014791)	ATP7B (ENSPFOG00000014876)	LRRC3 (ENSPFOG00000020176)	ENSPFOG00000015051	ENSPFOG00000015163
Guppy	MODERN SPECIES	450	mettl21a (ENSPREG00000016885)	CREB1 (ENSPREG00000016872)	klf7a (ENSPREG00000016867)	si:ch211-93g23.2 (ENSPREG00000016831)	RAMP1 (ENSPREG00000016819)	erbb4a (ENSPREG00000016755)	lancl1 (ENSPREG00000016732)	mylz3 (ENSPREG00000016719)	ENSPREG00000016631	ENSPREG00000016604	UNC80 (ENSPREG00000016482)	OSBPL11 (ENSPREG00000016431)	gpd1c (ENSPREG00000016404)	NCKAP5 (ENSPREG00000016365)	LYPD1 (ENSPREG00000016343)	ENSPREG00000016318 #22	ENSPREG00000016302	pou3f3b (ENSPREG00000016284)	mrps9 (ENSPREG00000016254)	ENSPREG00000016230	FAM171B (ENSPREG00000016216)	zswim2 (ENSPREG00000016206)	ENSPREG00000016193	ENSPREG00000016172	COL5A2 (ENSPREG00000015993)	ENSPREG00000015932	pwp2h (ENSPREG00000015887)	eed (ENSPREG00000015809)	ATP7B (ENSPREG00000015767)	LRRC3 (ENSPREG00000015757)	ENSPREG00000015736
Poecilia	ANCESTRAL SPECIES																	ENSGT00940000155065.xb.a.b #22
NAME_6	ANCESTRAL SPECIES	455											ENSGT00940000154817.b.a.c	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.xb.a.b #22
Amazon molly	MODERN SPECIES	865								clasp1a (ENSPFOG00000000392)	ahsa1b (ENSPFOG00000000452)	ENSPFOG00000024201	ENSPFOG00000022837	nifk (ENSPFOG00000000517)	ENSPFOG00000000544	zgc:172295 (ENSPFOG00000000658)	ddx18 (ENSPFOG00000000969) #24	actr3 (ENSPFOG00000001136) #22	tfcp2l1 (ENSPFOG00000001485)	ENSPFOG00000001863
NAME_4	ANCESTRAL SPECIES	90	ENSGT00940000155408.o.b	ENSGT00940000155235.k.b	ENSGT00940000165586.b	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a #22	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00940000177931	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b
Sheepshead minnow	MODERN SPECIES	265															LYPD1 (ENSCVAG00000000808)	ACTR3 (ENSCVAG00000000211) #22	pou3f3b (ENSCVAG00000007726)	mrps9 (ENSCVAG00000007791)	ENSCVAG00000007816	FAM171B (ENSCVAG00000007832)	zswim2 (ENSCVAG00000000212)	ENSCVAG00000008212	ENSCVAG00000014163	ENSCVAG00000014333	pwp2h (ENSCVAG00000000996)	eed (ENSCVAG00000014409)	ATP7B (ENSCVAG00000014446)	ENSCVAG00000014466	LRRC3 (ENSCVAG00000014472)	ENSCVAG00000014482	ENSCVAG00000014489
Mummichog	MODERN SPECIES	2266	klf7a (ENSFHEG00000008252)	ENSFHEG00000008274	RAMP1 (ENSFHEG00000008290)	erbb4a (ENSFHEG00000008374)	lancl1 (ENSFHEG00000008419)	mylz3 (ENSFHEG00000008428)	acadl (ENSFHEG00000008455)	ENSFHEG00000008465	ENSFHEG00000008496	ENSFHEG00000008511	OSBPL11 (ENSFHEG00000008566)	ENSFHEG00000008576	gpd1c (ENSFHEG00000008637)	NCKAP5 (ENSFHEG00000000681)	LYPD1 (ENSFHEG00000008701)	ACTR3 (ENSFHEG00000008744) #22	ENSFHEG00000008756	pou3f3b (ENSFHEG00000008779)	mrps9 (ENSFHEG00000008856)	ENSFHEG00000008868	FAM171B (ENSFHEG00000008900)	zswim2 (ENSFHEG00000008914)	ENSFHEG00000008985	ENSFHEG00000009001	ENSFHEG00000009028	ENSFHEG00000009063	pwp2h (ENSFHEG00000009078)
Aplocheiloidei	ANCESTRAL SPECIES	124	ENSGT00390000016499	ENSGT00730000111249	ENSGT00940000155868.f	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.yb #22	ENSGT00940000155065.xb.a #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166042.b	ENSGT00940000166277
Mangrove rivulus	DUPLICATION
Mangrove rivulus	MODERN SPECIES	96	CREB1 (ENSKMAG00000003336)	ENSKMAG00000003378	KLF7 (ENSKMAG00000003399)	RAMP1 (ENSKMAG00000003429)	erbb4a (ENSKMAG00000003490)	lancl1 (ENSKMAG00000003708)	mylz3 (ENSKMAG00000003763)	acadl (ENSKMAG00000003795)	ENSKMAG00000003852	ENSKMAG00000003880	UNC80 (ENSKMAG00000003925)	OSBPL11 (ENSKMAG00000004099)	gpd1c (ENSKMAG00000004164)	NCKAP5 (ENSKMAG00000004210)	LYPD1 (ENSKMAG00000004243)	actr3 (ENSKMAG00000004250) #22
Mangrove rivulus	MODERN SPECIES	116															tfcp2l1 (ENSKMAG00000008068)	actr3 (ENSKMAG00000007995) #22	ENSKMAG00000007867 ##23	ENSKMAG00000007797 ##23	trim63b (ENSKMAG00000007767)	cops8 (ENSKMAG00000007738)	ENSKMAG00000007638	ENSKMAG00000007555	syt9b (ENSKMAG00000007517)	ENSKMAG00000007503	ENSKMAG00000007485	RASSF10 (ENSKMAG00000007471)	tead1a (ENSKMAG00000007425)	parvaa (ENSKMAG00000007355)	mical2b (ENSKMAG00000007101)	dkk3b (ENSKMAG00000007031)	far1 (ENSKMAG00000006954)
Oryzias	ANCESTRAL SPECIES	75		ENSGT00950000183208.A.c.b	ENSGT00390000006631	ENSGT00940000157879	ENSGT00390000012914	ENSGT00940000165301.a	ENSGT01100000263523.A.z.d.h.w.a	ENSGT01100000263532.A.b.c.b	ENSGT01100000263532.A.a.a.a.a.a	ENSGT01100000263523.I.b	ENSGT01100000263523.I.a.a.a.b	ENSGT01100000263523.E	ENSGT00940000156449.b.b	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.xb.a #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166277	ENSGT00940000156462.B.d	ENSGT00940000156462.B.c.a.b.b	ENSGT00940000156462.B.c.b	ENSGT00940000156462.A	ENSGT00950000183138.a.b.r.b	ENSGT00530000063564.b.b.b
Oryzias_b	ANCESTRAL SPECIES	24	ENSGT00940000157249	ENSGT00940000155408.o.b	ENSGT00940000155235.k.b	ENSGT00940000165586.b	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a #22	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00940000155773.a	ENSGT01030000235131	ENSGT00950000183028.a.a.a.g.b	ENSGT00940000161625.m	ENSGT00390000003194.n.a	ENSGT00390000003194.n.b	ENSGT00940000165423.a.b	ENSGT01070000253760.b.a.a.a.b.a.a.a.a.a.a.a.a.a.a.b	ENSGT01100000263489.a.b.a.b.b.a.a.b.a.b.a.b.a.b.b.a	ENSGT01100000263489.a.b.a.b.b.a.a.a.a.b.a.b	ENSGT01020000230582	ENSGT01100000263489.a.b.a.b.b.a.a.b.a.a.a.a.a.b.a.b.b.b.b.b.a
Javanese ricefish	MODERN SPECIES	11	ENSOJAG00000010889	mettl21a (ENSOJAG00000010881)	CREB1 (ENSOJAG00000010805)	klf7a (ENSOJAG00000010793)	si:ch211-93g23.2 (ENSOJAG00000010785)	RAMP1 (ENSOJAG00000010777)	erbb4a (ENSOJAG00000006976)	ENSOJAG00000006555	lancl1 (ENSOJAG00000006445)	acadl (ENSOJAG00000005560)	ENSOJAG00000005443	gpd1c (ENSOJAG00000005357)	ENSOJAG00000005329	ENSOJAG00000005320	LYPD1 (ENSOJAG00000005312)	actr3 (ENSOJAG00000005253) #22	pou3f3b (ENSOJAG00000005234)	mrps9 (ENSOJAG00000005057)	ENSOJAG00000005026	ENSOJAG00000003970	ENSOJAG00000003735	ENSOJAG00000003720	ENSOJAG00000003675	ENSOJAG00000003657	ENSOJAG00000003136	ENSOJAG00000003123	ENSOJAG00000003109	ENSOJAG00000003095	ENSOJAG00000003071	ENSOJAG00000003065	ENSOJAG00000003057
Indian medaka	DUPLICATION
Indian medaka	MODERN SPECIES	20	RAMP1 (ENSOMEG00000013331)	ENSOMEG00000013308	ENSOMEG00000013298	erbb4a (ENSOMEG00000013241)	ENSOMEG00000013039	lancl1 (ENSOMEG00000013026)	mylz3 (ENSOMEG00000012994)	acadl (ENSOMEG00000012967)	ENSOMEG00000012905	ENSOMEG00000012845	ENSOMEG00000012825	ENSOMEG00000012810	gpd1c (ENSOMEG00000012800)	NCKAP5 (ENSOMEG00000012736)	LYPD1 (ENSOMEG00000012570)	actr3 (ENSOMEG00000012544) #22
Indian medaka	MODERN SPECIES	38	ENSOMEG00000017254	ENSOMEG00000017268	ENSOMEG00000017276	ENSOMEG00000017289	ENSOMEG00000017309	MPP4 (ENSOMEG00000017364)	TRIM45 (ENSOMEG00000017394)	man1a2 (ENSOMEG00000017454)	tent5c (ENSOMEG00000017474)	gdap2 (ENSOMEG00000017513)	wdr3 (ENSOMEG00000017592)	ENSOMEG00000017637	ENSOMEG00000017656	zgc:172295 (ENSOMEG00000017731)	ddx18 (ENSOMEG00000017773) #24	actr3 (ENSOMEG00000017827) #22	ENSOMEG00000017943 ##23	ENSOMEG00000000467 ##23	cops8 (ENSOMEG00000018087)	COL6A3 (ENSOMEG00000018190)	ENSOMEG00000018229	ENSOMEG00000018254	ENSOMEG00000018325	ENSOMEG00000018366	RAPH1 (ENSOMEG00000018419)	ENSOMEG00000018493	crygm3 (ENSOMEG00000000863)	ENSOMEG00000018531	ENSOMEG00000018539	ENSOMEG00000018570	ENSOMEG00000018590
Oryzias_a	ANCESTRAL SPECIES	97	ENSGT00390000006631	ENSGT00940000157879	ENSGT00390000012914	ENSGT00940000165301.a	ENSGT01100000263523.A.z.d.h.w.a	ENSGT01100000263532.B.b	ENSGT01100000263532.A.a.b.i	ENSGT01100000263523.K	ENSGT01100000263523.G.a.b.b	ENSGT01100000263523.H.a	ENSGT01100000263523.I.a.a.a.b	ENSGT01100000263523.E	ENSGT00940000156449.b.b	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.xb.a #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166277	ENSGT00940000156462.B.d	ENSGT00940000156462.B.c.a.b.b	ENSGT00940000156462.B.c.b	ENSGT00950000183138.a.b.r.b	ENSGT00530000063564.b.b.b
Chinese medaka	MODERN SPECIES	1128	zeb2a (ENSOSIG00000010015)	MYLK (ENSOSIG00000009990)	tp53rk (ENSOSIG00000009989)	ENSOSIG00000009987	ENSOSIG00000009986	ENSOSIG00000009984	ENSOSIG00000009983	ENSOSIG00000009982	ENSOSIG00000009980	ENSOSIG00000022392	ENSOSIG00000022388	ENSOSIG00000022381	ENSOSIG00000022369	zgc:172295 (ENSOSIG00000022357)	ddx18 (ENSOSIG00000022345) #24	actr3 (ENSOSIG00000022324) #22	ENSOSIG00000021450 ##23	ENSOSIG00000021420 ##23	cops8 (ENSOSIG00000021411)	ENSOSIG00000021409	ENSOSIG00000021406
Japanese Medaka HdrR	DUPLICATION
Japanese Medaka HdrR	MODERN SPECIES	11	ENSORLG00000027116	ENSORLG00000027125	ENSORLG00000001841	ENSORLG00000023893	ENSORLG00000001848	ENSORLG00000001854	ENSORLG00000001869	ENSORLG00000001882	mrps9 (ENSORLG00000001896)	pou3f3b (ENSORLG00000001901)	ENSORLG00000023000	OSBPL11 (ENSORLG00000001914)	gpd1c (ENSORLG00000001939)	NCKAP5 (ENSORLG00000001953)	ENSORLG00000028132	ACTR3 (ENSORLG00000001964) #22	COL8A1 (ENSORLG00000001968)	ENSORLG00000001973	FILIP1L (ENSORLG00000001976)	ENSORLG00000024492	ccdc28a (ENSORLG00000026855)	prox1a (ENSORLG00000001996)	ENSORLG00000027612	ATP1A1 (ENSORLG00000018557)	ENSORLG00000002047	obsl1a (ENSORLG00000002135)	CTDSP1 (ENSORLG00000002151)	spega (ENSORLG00000002177)	inha (ENSORLG00000002184)	ENSORLG00000002202	stk11ip (ENSORLG00000002225)
Japanese Medaka HdrR	MODERN SPECIES	13	ENSORLG00000024835	ENSORLG00000026975	ENSORLG00000029121	ENSORLG00000025067	ENSORLG00000024269	ENSORLG00000028350	ENSORLG00000027326	ENSORLG00000028119	ENSORLG00000028842	ENSORLG00000027027	ENSORLG00000025254	ENSORLG00000024035	ENSORLG00000029523	ENSORLG00000008069	ddx18 (ENSORLG00000008090) #24	actr3 (ENSORLG00000008104) #22	ENSORLG00000008123 ##23	ENSORLG00000008155 ##23	cops8 (ENSORLG00000008172)	COL6A3 (ENSORLG00000008197)	ENSORLG00000027455	ENSORLG00000027647	ENSORLG00000024019	ENSORLG00000030179	ENSORLG00000024761	ENSORLG00000008202	ENSORLG00000029098	ENSORLG00000028419	ENSORLG00000025311	ENSORLG00000008223	ENSORLG00000026226
Percomorphaceae_C	ANCESTRAL SPECIES	23	ENSGT00940000155408.o.b	ENSGT00940000155235.k.b	ENSGT00940000165586.b	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a #22	ENSGT00940000155065.xb.b #22	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00940000177931	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d
Percomorphaceae_D	ANCESTRAL SPECIES	12	ENSGT00730000111249	ENSGT00940000155868.f	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.yb #22	ENSGT00940000155065.xb.a #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166042.b	ENSGT00940000166277	ENSGT00940000171532	ENSGT00940000156462.B.d	ENSGT00940000156462.B.c.a.b.b	ENSGT00940000156462.B.c.b	ENSGT00940000156462.B.c.a.a	ENSGT00940000156462.A	ENSGT00950000183138.a.b.r.b	ENSGT00940000177438	ENSGT00940000161839	ENSGT00530000063564.b.b.b	ENSGT00940000158493
Anabantaria	ANCESTRAL SPECIES																	ENSGT00940000155065.xb.a #22
Anabantoidei	ANCESTRAL SPECIES																	ENSGT00940000155065.xb.a #22
Siamese fighting fish	MODERN SPECIES	11	LYPD1 (ENSBSLG00000023446)	gpr39 (ENSBSLG00000023454)	SLC35F5 (ENSBSLG00000023523) #21	SYMPK (ENSBSLG00000023781)	zgc:136439 (ENSBSLG00000023918)	ENSBSLG00000023950	asnsd1 (ENSBSLG00000023938)	slc40a1 (ENSBSLG00000023961)	wdr75 (ENSBSLG00000023991)	STAT4 (ENSBSLG00000024063)	ENSBSLG00000024106	ENSBSLG00000024209	fkbp7 (ENSBSLG00000025010)	zgc:172295 (ENSBSLG00000025488)	ddx18 (ENSBSLG00000025695) #24	actr3 (ENSBSLG00000025746) #22	ENSBSLG00000025939	ENSBSLG00000026090 ##23	ENSBSLG00000004877 ##23	cops8 (ENSBSLG00000004929)	COL6A3 (ENSBSLG00000005154)	ENSBSLG00000005925	MLPH (ENSBSLG00000005933)	RAB17 (ENSBSLG00000006286)	ENSBSLG00000006516	ENSBSLG00000006848	tyw5 (ENSBSLG00000006858)	maip1 (ENSBSLG00000006900)	maip1 (ENSBSLG00000006922)	maip1 (ENSBSLG00000006940)	PLCD4 (ENSBSLG00000006962)
Carangaria	ANCESTRAL SPECIES	12	ENSGT00940000177543	ENSGT00730000111249	ENSGT00940000155868.f	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.xb.a #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166042.b	ENSGT00940000166277	ENSGT00940000171532	ENSGT00940000156462.B.d	ENSGT00940000156462.B.c.b	ENSGT00940000156462.B.c.a.a	ENSGT00940000156462.A	ENSGT00940000156462.B.c.a.b.b	ENSGT00950000183138.a.b.r.b	ENSGT00940000177438	ENSGT00940000161839	ENSGT00530000063564.b.b.b	ENSGT00530000063564.b.a.b
Carangaria_A	ANCESTRAL SPECIES	11										ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.xb.a #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166277	ENSGT00940000156462.B.c.a.b.b	ENSGT00940000156462.B.c.b	ENSGT00940000156462.B.c.a.a	ENSGT00940000156462.A	ENSGT00950000183138.a.b.r.b	ENSGT00940000177438	ENSGT00940000161839	ENSGT00530000063564.b.a.b	ENSGT00940000158493	ENSGT00390000004145.b	ENSGT00390000016484	ENSGT00940000155466.e.b
Seriola	ANCESTRAL SPECIES	34										ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.xb.a #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166277	ENSGT00940000156462.B.c.a.b.b	ENSGT00940000156462.B.c.b	ENSGT00940000156462.B.c.a.a	ENSGT00940000156462.A	ENSGT00950000183138.a.b.r.b	ENSGT00940000177438	ENSGT00940000161839	ENSGT00530000063564.b.b.b	ENSGT00940000158493	ENSGT00390000004145.b	ENSGT00390000016484	ENSGT00940000155466.e.b
Greater amberjack	MODERN SPECIES	21								ENSSDUG00000005672	ENSSDUG00000005678	tfcp2l1 (ENSSDUG00000005692)	clasp1a (ENSSDUG00000005734)	nifk (ENSSDUG00000005813)	ENSSDUG00000005840	zgc:172295 (ENSSDUG00000005893)	ddx18 (ENSSDUG00000005957) #24	actr3 (ENSSDUG00000005999) #22	ENSSDUG00000006039 ##23	ENSSDUG00000006158 ##23	cops8 (ENSSDUG00000006205)	trim63b (ENSSDUG00000006213)	COL6A3 (ENSSDUG00000006293)	ENSSDUG00000006486	ENSSDUG00000006504	MLPH (ENSSDUG00000006522)	ENSSDUG00000006605	RAB17 (ENSSDUG00000006618)	ENSSDUG00000006643	tyw5 (ENSSDUG00000006709)	maip1 (ENSSDUG00000006738)	PGAP1 (ENSSDUG00000006768)	HECW2 (ENSSDUG00000006908)
Yellowtail amberjack	MODERN SPECIES	2968	ENSSLDG00000002891	ENSSLDG00000002908	mmadhcb (ENSSLDG00000002926)	LYPD6 (ENSSLDG00000002966)	ENSSLDG00000002991	arglu1a (ENSSLDG00000003015)	efnb2a (ENSSLDG00000003056)	ENSSLDG00000003106	ENSSLDG00000003121	tfcp2l1 (ENSSLDG00000003147)	clasp1a (ENSSLDG00000003234)	nifk (ENSSLDG00000003456)	ENSSLDG00000003474	zgc:172295 (ENSSLDG00000003563)	ddx18 (ENSSLDG00000003692) #24	actr3 (ENSSLDG00000003797) #22	ENSSLDG00000003857 ##23	ENSSLDG00000003951 ##23	ENSSLDG00000003970	cops8 (ENSSLDG00000004007)	COL6A3 (ENSSLDG00000004066)
Pleuronectoidei	ANCESTRAL SPECIES	9	ENSGT00940000157541.f.d	ENSGT00390000015050.`b.a	ENSGT00730000111249	ENSGT00940000155868.f	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.xb.a #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166042.b	ENSGT00940000166277	ENSGT00940000171532	ENSGT00940000156462.B.d	ENSGT00940000156462.B.c.b	ENSGT00940000156462.A	ENSGT00940000156462.B.c.a.b.b	ENSGT00950000183138.a.b.r.b	ENSGT00940000177438	ENSGT00940000161839	ENSGT00530000063564.b.b.b	ENSGT00940000158493	ENSGT00390000004145.b
Tongue sole	DUPLICATION
Tongue sole	MODERN SPECIES	5	GPR180 (ENSCSEG00000003364)	cdadc1 (ENSCSEG00000003370)	cab39l (ENSCSEG00000003374)	MCF2L (ENSCSEG00000003384)	arpc2 (ENSCSEG00000003404)	ENSCSEG00000003406	ENSCSEG00000003409	ENSCSEG00000003414	bzw1a (ENSCSEG00000003418)	ENSCSEG00000003428	ENSCSEG00000003432	KYNU (ENSCSEG00000003441)	OSBPL11 (ENSCSEG00000003461)	ENSCSEG00000003472	LYPD1 (ENSCSEG00000003476)	actr3 (ENSCSEG00000003485) #22	pou3f3b (ENSCSEG00000003499)	mrps9 (ENSCSEG00000003508)	ENSCSEG00000003510	NSMF (ENSCSEG00000003518)	ENSCSEG00000003532	ENSCSEG00000003544	ADORA2A (ENSCSEG00000003550)	BCR (ENSCSEG00000003567)	atp2a2b (ENSCSEG00000003600)	pus1 (ENSCSEG00000003629)	noc4l (ENSCSEG00000003635)	RIMBP2 (ENSCSEG00000003643)	ENSCSEG00000003654	TMEM132C (ENSCSEG00000003665)	ENSCSEG00000003709
Tongue sole	MODERN SPECIES	7	ENSCSEG00000015535	ENSCSEG00000015528	arglu1a (ENSCSEG00000015511)	efnb2a (ENSCSEG00000015494)	gtpbp8 (ENSCSEG00000015488)	slc10a2 (ENSCSEG00000015484)	ENSCSEG00000015477	inhbb (ENSCSEG00000015473)	gli2a (ENSCSEG00000015457)	ENSCSEG00000015429	nifk (ENSCSEG00000015419)	clasp1a (ENSCSEG00000015392)	tfcp2l1 (ENSCSEG00000015326)	zgc:172295 (ENSCSEG00000015293)	ddx18 (ENSCSEG00000015266) #24	actr3 (ENSCSEG00000015255) #22	ENSCSEG00000015233 ##23	trim63b (ENSCSEG00000015223)	cops8 (ENSCSEG00000015213)	ENSCSEG00000015209	COL6A3 (ENSCSEG00000015177)	ENSCSEG00000015161	ENSCSEG00000015147	ENSCSEG00000015137	ENSCSEG00000015129	tyw5 (ENSCSEG00000015119)	maip1 (ENSCSEG00000015115)	PGAP1 (ENSCSEG00000015103)	HECW2 (ENSCSEG00000015064)	stk17b (ENSCSEG00000015043)	zgc:153521 (ENSCSEG00000015035)
Eupercaria	ANCESTRAL SPECIES	23	ENSGT00940000155408.o.b	ENSGT00940000155235.k.b	ENSGT00940000165586.b	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a #22	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00940000177931	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b
Tetraodontidae	ANCESTRAL SPECIES		ENSGT00940000158406	ENSGT00940000157314.B	ENSGT00510000048978	ENSGT00940000155868.f	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000165735.b	ENSGT00940000159862.a	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.yb #22	ENSGT00940000155065.xb.a #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166042.b	ENSGT00940000166277	ENSGT00940000156462.B.c.a.b.b	ENSGT00950000183138.a.b.r.b	ENSGT00940000161839	ENSGT00530000063564.b.b.b	ENSGT00940000158493	ENSGT00390000004145.b	ENSGT00390000016484	ENSGT00940000155466.e.b	ENSGT00940000154014.b.b	ENSGT00390000005550	ENSGT00390000005581.b
Tetraodon	MODERN SPECIES	13	insig2 (ENSTNIG00000005976) #26	si:dkey-251i10.3 (ENSTNIG00000005975)	efnb2a (ENSTNIG00000017824)	gtpbp8 (ENSTNIG00000017825)	slc10a2 (ENSTNIG00000017826)	ENSTNIG00000017827	ENSTNIG00000000433	inhbb (ENSTNIG00000000778)	ENSTNIG00000017828	tfcp2l1 (ENSTNIG00000017829)	clasp1a (ENSTNIG00000017830)	nifk (ENSTNIG00000017831)	ENSTNIG00000017832	zgc:172295 (ENSTNIG00000017833)	ddx18 (ENSTNIG00000017834) #24	actr3 (ENSTNIG00000017835) #22	ENSTNIG00000017836 ##23	ENSTNIG00000017837	ENSTNIG00000001179	ENSTNIG00000001233	ENSTNIG00000017839 ##23	trim63b (ENSTNIG00000017841)	cops8 (ENSTNIG00000017840)	COL6A3 (ENSTNIG00000017842)	ENSTNIG00000017843	ENSTNIG00000017844	LRRFIP1 (ENSTNIG00000017845)	tyw5 (ENSTNIG00000017846)	maip1 (ENSTNIG00000017847)	PGAP1 (ENSTNIG00000017848)	HECW2 (ENSTNIG00000017849)
Eupecaria_A	ANCESTRAL SPECIES	23	ENSGT00940000155408.o.b	ENSGT00940000155235.k.b	ENSGT00940000165586.b	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a #22	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00940000177931	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	65					ERBB4 (ENSLBEG00000007583)	lancl1 (ENSLBEG00000007526)	mylz3 (ENSLBEG00000007506)	acadl (ENSLBEG00000007469)	ENSLBEG00000007407	ENSLBEG00000007366	ENSLBEG00000007343	OSBPL11 (ENSLBEG00000007267)	gpd1c (ENSLBEG00000007203)	NCKAP5 (ENSLBEG00000007143)	LYPD1 (ENSLBEG00000007128)	actr3 (ENSLBEG00000007072) #22	ENSLBEG00000007033	pou3f3b (ENSLBEG00000007009)	ENSLBEG00000006977	mrps9 (ENSLBEG00000006954)	SLAIN1 (ENSLBEG00000006927)	FAM171B (ENSLBEG00000006878)	zswim2 (ENSLBEG00000006844)	ENSLBEG00000006775	ENSLBEG00000006549	ENSLBEG00000006488	pwp2h (ENSLBEG00000006388)	eed (ENSLBEG00000006356)	ATP7B (ENSLBEG00000006266)	LRRC3 (ENSLBEG00000006245)	ENSLBEG00000006201
Ballan wrasse	MODERN SPECIES	55				gtpbp8 (ENSLBEG00000026954)	slc10a2 (ENSLBEG00000026969)	ENSLBEG00000026983	inhbb (ENSLBEG00000026996)	gli2a (ENSLBEG00000027012)	ENSLBEG00000027039	tfcp2l1 (ENSLBEG00000027055)	clasp1a (ENSLBEG00000027086)	nifk (ENSLBEG00000027125)	ENSLBEG00000027153	zgc:172295 (ENSLBEG00000027182)	ddx18 (ENSLBEG00000027227) #24	actr3 (ENSLBEG00000027252) #22	ENSLBEG00000027295 ##23	ENSLBEG00000027355 ##23	cops8 (ENSLBEG00000027418)	ENSLBEG00000027430	ENSLBEG00000027448	ENSLBEG00000027476	ENSLBEG00000027507	ENSLBEG00000027538	ENSLBEG00000027580	ENSLBEG00000027588	ENSLBEG00000027600	MLPH (ENSLBEG00000027636)	ENSLBEG00000027682	RAB17 (ENSLBEG00000027691)	ENSLBEG00000027720
Eupecaria_B	ANCESTRAL SPECIES	23	ENSGT00940000155408.o.b	ENSGT00940000155235.k.b	ENSGT00940000165586.b	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a #22	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00940000177931	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b
Perciformes	ANCESTRAL SPECIES	27											ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a #22	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00940000177931	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b
Perciformes_a	ANCESTRAL SPECIES	29				ENSGT01030000234635.a.b.a.b.a	ENSGT00940000155318.b.b	ENSGT00390000010543	ENSGT00940000156365	ENSGT00940000157860	ENSGT00390000000292.B	ENSGT00390000013073	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a #22	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00940000177931	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b
Pike perch	MODERN SPECIES	9	wdr12 (ENSSLUG00000025741)	nop58 (ENSSLUG00000025745)	ENSSLUG00000025754	chn1 (ENSSLUG00000025763)	FARP1 (ENSSLUG00000025804)	ggact.3 (ENSSLUG00000025819)	arl13b (ENSSLUG00000025823)	NCAM2 (ENSSLUG00000025829)	ENSSLUG00000025834	gart (ENSSLUG00000025845)	n6amt1 (ENSSLUG00000025852)	OSBPL11 (ENSSLUG00000025859)	gpd1c (ENSSLUG00000025864)	NCKAP5 (ENSSLUG00000025867)	LYPD1 (ENSSLUG00000025873)	actr3 (ENSSLUG00000025880) #22	ENSSLUG00000025884	pou3f3b (ENSSLUG00000025885)	mrps9 (ENSSLUG00000025888)	ENSSLUG00000025889	FAM171B (ENSSLUG00000025890)	zswim2 (ENSSLUG00000025891)	ENSSLUG00000025893	ENSSLUG00000025899	ENSSLUG00000025902	ENSSLUG00000025903	pwp2h (ENSSLUG00000025908)	ATP7B (ENSSLUG00000025934)	LRRC3 (ENSSLUG00000025954)	ENSSLUG00000025955	ENSSLUG00000025956
Cottioidei	ANCESTRAL SPECIES	48	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00940000155749.d	ENSGT00510000047334	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000155675.p.b	ENSGT00940000165235.a.a	ENSGT00390000006826	ENSGT00950000183184.a.a.b	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a #22	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00390000013073	ENSGT00390000000292.B	ENSGT00940000157860	ENSGT00940000156365	ENSGT00390000010543	ENSGT00940000155318.b.b	ENSGT01030000234635.a.b.a.b.a
Lumpfish	MODERN SPECIES	11	ENSCLMG00005005299	LRRC3 (ENSCLMG00005005297)	ATP7B (ENSCLMG00005004095)	pwp2h (ENSCLMG00005004069)	ENSCLMG00005004061	ENSCLMG00005004058	ENSCLMG00005003879	zswim2 (ENSCLMG00005003873)	FAM171B (ENSCLMG00005003871)	ENSCLMG00005003860	ENSCLMG00005003870	OSBPL11 (ENSCLMG00005003844)	gpd1c (ENSCLMG00005003822)	NCKAP5 (ENSCLMG00005003817)	ENSCLMG00005003813	actr3 (ENSCLMG00005003694) #22	ENSCLMG00005003691	pou3f3b (ENSCLMG00005003690)	mrps9 (ENSCLMG00005003170)	ENSCLMG00005003157	n6amt1 (ENSCLMG00005003150)	gart (ENSCLMG00005003036)	ENSCLMG00005002951	ENSCLMG00005002934	ENSCLMG00005002920	ENSCLMG00005002907	ENSCLMG00005002895	ENSCLMG00005002877	ENSCLMG00005002826	ENSCLMG00005011335	ENSCLMG00005011334
Stickleback	DUPLICATION
Stickleback	MODERN SPECIES	530	TUBA4A (ENSGACG00000014965)	gpd2 (ENSGACG00000014962)	ENSGACG00000014958	ENSGACG00000014955	LRRC3 (ENSGACG00000014953)	ATP7B (ENSGACG00000014945)	eed (ENSGACG00000014939)	pwp2h (ENSGACG00000014928)	ENSGACG00000014923	ENSGACG00000014916	ENSGACG00000014913	OSBPL11 (ENSGACG00000014904)	gpd1c (ENSGACG00000014899)	NCKAP5 (ENSGACG00000014896)	ENSGACG00000014894	actr3 (ENSGACG00000014876) #22
Stickleback	MODERN SPECIES	16	ENSGACG00000001537	arglu1a (ENSGACG00000001538)	efnb2a (ENSGACG00000001539)	gtpbp8 (ENSGACG00000001542)	ENSGACG00000001543	slc10a2 (ENSGACG00000001545)	inhbb (ENSGACG00000001546)	gli2a (ENSGACG00000001547)	ENSGACG00000001548	tfcp2l1 (ENSGACG00000001549)	clasp1a (ENSGACG00000001550)	nifk (ENSGACG00000001551)	ENSGACG00000001556	zgc:172295 (ENSGACG00000001559)	ddx18 (ENSGACG00000001563) #24	actr3 (ENSGACG00000001577) #22	ENSGACG00000001590 ##23	ENSGACG00000001595 ##23	cops8 (ENSGACG00000001602)	trim63b (ENSGACG00000001607)	COL6A3 (ENSGACG00000001609)	ENSGACG00000001620	ENSGACG00000001638	ENSGACG00000001640	tyw5 (ENSGACG00000001659)	maip1 (ENSGACG00000001661)	PGAP1 (ENSGACG00000001664)	HECW2 (ENSGACG00000001668)	stk17b (ENSGACG00000001676)	zgc:153521 (ENSGACG00000001680)	atp6ap2 (ENSGACG00000001684)
Eupecaria_C	ANCESTRAL SPECIES	30	ENSGT00940000155408.o.b	ENSGT00940000155235.k.b	ENSGT00940000165586.b	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a #22	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d.cb	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	41	ENSGT00940000157249	ENSGT00940000155408.o.b	ENSGT00940000155235.k.b	ENSGT00940000165586.b	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a #22	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d.cb	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C
Large yellow croaker	MODERN SPECIES	486	CREB1 (ENSLCRG00005004271)	klf7a (ENSLCRG00005004301)	si:ch211-93g23.2 (ENSLCRG00005004302)	RAMP1 (ENSLCRG00005004304)	erbb4a (ENSLCRG00005004324)	ENSLCRG00005004961	lancl1 (ENSLCRG00005004963)	mylz3 (ENSLCRG00005004965)	acadl (ENSLCRG00005004993)	ENSLCRG00005005063	ENSLCRG00005005071	OSBPL11 (ENSLCRG00005005075)	gpd1c (ENSLCRG00005005078)	NCKAP5 (ENSLCRG00005005087)	LYPD1 (ENSLCRG00005005090)	actr3 (ENSLCRG00005005092) #22	ENSLCRG00005005108	pou3f3b (ENSLCRG00005005109)	mrps9 (ENSLCRG00005005112)	SLAIN1 (ENSLCRG00005005207)	FAM171B (ENSLCRG00005005210)	zswim2 (ENSLCRG00005005211)	ENSLCRG00005005215	ENSLCRG00005005225	clcn4 (ENSLCRG00005005283)	ENSLCRG00005005464	ENSLCRG00005005469	CLASP1 (ENSLCRG00005005519)	gli2b (ENSLCRG00005008478)	INHBB (ENSLCRG00005008479)	ENSLCRG00005008480
Gilthead seabream	DUPLICATION
Gilthead seabream	MODERN SPECIES	16	ENSSAUG00010017966	ENSSAUG00010017965	ENSSAUG00010017964	ENSSAUG00010017963	ENSSAUG00010017961	ENSSAUG00010017958	ENSSAUG00010017955	ENSSAUG00010017954	ENSSAUG00010017953	ENSSAUG00010017952	ENSSAUG00010017947	OSBPL11 (ENSSAUG00010017936)	gpd1c (ENSSAUG00010017909)	NCKAP5 (ENSSAUG00010017901)	LYPD1 (ENSSAUG00010017899)	actr3 (ENSSAUG00010017878) #22	ENSSAUG00010017876	pou3f3b (ENSSAUG00010017873)	mrps9 (ENSSAUG00010017854)	ENSSAUG00010017850	SLAIN1 (ENSSAUG00010017846)	ENSSAUG00010017840	ENSSAUG00010017837	ENSSAUG00010017836	ENSSAUG00010017834	ENSSAUG00010017832	ENSSAUG00010026067	FAM171B (ENSSAUG00010026066)	ENSSAUG00010026065	ENSSAUG00010026059	pwp2h (ENSSAUG00010026036)
Gilthead seabream	MODERN SPECIES	23	ENSSAUG00010022296	inhbb (ENSSAUG00010022293)	ENSSAUG00010022288	ENSSAUG00010022286	ENSSAUG00010022253	ENSSAUG00010022251	ENSSAUG00010022248	ENSSAUG00010022246	tfcp2l1 (ENSSAUG00010022242)	tfcp2l1 (ENSSAUG00010022237)	clasp1a (ENSSAUG00010018312)	nifk (ENSSAUG00010018263)	ENSSAUG00010018261	zgc:172295 (ENSSAUG00010015328)	ddx18 (ENSSAUG00010015230) #24	actr3 (ENSSAUG00010014775) #22	ENSSAUG00010010808 ##23	ENSSAUG00010010749 ##23	cops8 (ENSSAUG00010010746)	COL6A3 (ENSSAUG00010010741)	ENSSAUG00010010327	ENSSAUG00010010320	MLPH (ENSSAUG00010010317)	ENSSAUG00010010315	RAB17 (ENSSAUG00010010314)	LRRFIP1 (ENSSAUG00010010306)	tyw5 (ENSSAUG00010010293)	maip1 (ENSSAUG00010010290)	PGAP1 (ENSSAUG00010010282)	HECW2 (ENSSAUG00010009675)	stk17b (ENSSAUG00010009654)
Euacanthomorphacea	ANCESTRAL SPECIES	26	ENSGT00940000155408.o.b	ENSGT00940000155235.k.b	ENSGT00940000165586.b	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00930000151029.i.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b #22	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C
Percomorphaceae	ANCESTRAL SPECIES	22	ENSGT00940000157249	ENSGT00940000155408.o.b	ENSGT00940000155235.k.b	ENSGT00940000165586.b	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b #22	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C
Tiger tail seahorse	MODERN SPECIES	404	ATP7B (ENSHCOG00000017943)	eed (ENSHCOG00000018019)	pwp2h (ENSHCOG00000018121)	ENSHCOG00000018137	ENSHCOG00000018153	ENSHCOG00000018182	ENSHCOG00000018192	ENSHCOG00000018263	ENSHCOG00000018303	gpd1c (ENSHCOG00000018335)	ENSHCOG00000018361	OSBPL11 (ENSHCOG00000018415)	NCKAP5 (ENSHCOG00000018424)	ENSHCOG00000018442	LYPD1 (ENSHCOG00000018450)	actr3 (ENSHCOG00000018497) #22	ENSHCOG00000018520	pou3f3b (ENSHCOG00000018524)	spo11 (ENSHCOG00000018647)	bmp7b (ENSHCOG00000018687)	irf10 (ENSHCOG00000018699)	ENSHCOG00000000585	ENSHCOG00000000765	ENSHCOG00000018728	MTG2 (ENSHCOG00000018733)	LSM14B (ENSHCOG00000018747)	CDH4 (ENSHCOG00000018785)	kcnk15 (ENSHCOG00000018798)	ogfr (ENSHCOG00000018803)	col9a3 (ENSHCOG00000018872)	ENSHCOG00000018916
Percomorphaceae_B	ANCESTRAL SPECIES	22	ENSGT00940000155408.o.b	ENSGT00940000155235.k.b	ENSGT00940000165586.b	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b #22	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00940000177931	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b
Percomorphaceae_C	ANCESTRAL SPECIES	23	ENSGT00940000155235.k.b	ENSGT00940000165586.b	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.a #22	ENSGT00940000155065.xb.b #22	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00940000177931	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b
Percomorphaceae_D	ANCESTRAL SPECIES	23	ENSGT00940000155408.o.b	ENSGT00940000155235.k.b	ENSGT00940000165586.b	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b #22	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C
Carangaria	ANCESTRAL SPECIES	23	ENSGT00940000155408.o.b	ENSGT00940000155235.k.b	ENSGT00940000165586.b	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652.p	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b #22	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325.d	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C
Carangaria_A	ANCESTRAL SPECIES	38	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00940000155749.d	ENSGT00510000047334	ENSGT00550000074981	ENSGT00950000183140.a.a	ENSGT00940000168325.d	ENSGT00940000165235.a.a	ENSGT00390000006826	ENSGT00950000183184.a.a.b	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b #22	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f
Seriola	ANCESTRAL SPECIES	47												ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b #22	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C
Greater amberjack	MODERN SPECIES	7												OSBPL11 (ENSSDUG00000011051)	gpd1c (ENSSDUG00000011096)	NCKAP5 (ENSSDUG00000011127)	LYPD1 (ENSSDUG00000011164)	actr3 (ENSSDUG00000011172) #22	ENSSDUG00000011199	pou3f3b (ENSSDUG00000011212)	mrps9 (ENSSDUG00000011236)	SLAIN1 (ENSSDUG00000011268)	zswim2 (ENSSDUG00000011305)	FAM171B (ENSSDUG00000011334)	ENSSDUG00000011349	ENSSDUG00000011373	ENSSDUG00000011421	ENSSDUG00000011435	pwp2h (ENSSDUG00000011462)	eed (ENSSDUG00000011532)	ATP7B (ENSSDUG00000011556)	LRRC3 (ENSSDUG00000011592)	ENSSDUG00000011608
Yellowtail amberjack	MODERN SPECIES	3005	CREB1 (ENSSLDG00000005993)	klf7a (ENSSLDG00000005956)	si:ch211-93g23.2 (ENSSLDG00000005926)	RAMP1 (ENSSLDG00000005911)	erbb4a (ENSSLDG00000005838)	lancl1 (ENSSLDG00000005802)	mylz3 (ENSSLDG00000005770)	acadl (ENSSLDG00000005722)	ENSSLDG00000005658	UNC80 (ENSSLDG00000005477)	gpd1c (ENSSLDG00000005420)	OSBPL11 (ENSSLDG00000005371)	ENSSLDG00000005335	ENSSLDG00000005306	LYPD1 (ENSSLDG00000005291)	actr3 (ENSSLDG00000005231) #22	ENSSLDG00000005209	pou3f3b (ENSSLDG00000005195)	mrps9 (ENSSLDG00000005169)	ENSSLDG00000005141	ENSSLDG00000004979	stoml2 (ENSSLDG00000004916)	ENSSLDG00000004890	ENSSLDG00000004843	cbsa (ENSSLDG00000004764)	u2af1 (ENSSLDG00000004576)	ENSSLDG00000004551	zgc:172122 (ENSSLDG00000004531)	ENSSLDG00000004521	ENSSLDG00000004505	ENSSLDG00000004486
Barramundi perch	MODERN SPECIES	115	ENSLCAG00010011361	LRRC3 (ENSLCAG00010011355)	ATP7B (ENSLCAG00010010607)	eed (ENSLCAG00010010473)	pwp2h (ENSLCAG00010010467)	ENSLCAG00010010465	ENSLCAG00010010090	ENSLCAG00010009959	zswim2 (ENSLCAG00010009948)	FAM171B (ENSLCAG00010009946)	ENSLCAG00010009938	OSBPL11 (ENSLCAG00010009913)	gpd1c (ENSLCAG00010009903)	NCKAP5 (ENSLCAG00010009890)	LYPD1 (ENSLCAG00010009884)	actr3 (ENSLCAG00010009875) #22	ENSLCAG00010009867	ENSLCAG00010009865	pou3f3b (ENSLCAG00010009863)	mrps9 (ENSLCAG00010009840)	SLAIN1 (ENSLCAG00010009828)
Anabantaria	ANCESTRAL SPECIES	32												ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b #22	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C
Anabantoidei	ANCESTRAL SPECIES	28	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000164908	ENSGT00940000157360.c	ENSGT00940000154657.A.d ##23	ENSGT00950000183165.a.a.a	ENSGT00950000183038.a.b.b.b.r	ENSGT00390000001718.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b #22	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C
Climbing perch	MODERN SPECIES	11	cyp20a1 (ENSATEG00000013941)	tmem237b (ENSATEG00000013987)	ENSATEG00000014005	ALS2 (ENSATEG00000014072)	ENSATEG00000014233	ENSATEG00000014443	ENSATEG00000014519	ENSATEG00000014628 ##23	ENSATEG00000026630	ENSATEG00000014678	ENSATEG00000014800	ENSATEG00000014880	ENSATEG00000014967	ENSATEG00000015005	ENSATEG00000015044	ENSATEG00000015062 #22	ENSATEG00000015108	ENSATEG00000015179	mrps9 (ENSATEG00000015199)	ENSATEG00000015213	FAM171B (ENSATEG00000015221)	ENSATEG00000015273	ENSATEG00000015305	ENSATEG00000026059	ENSATEG00000015465	ENSATEG00000015493	ENSATEG00000015756	ENSATEG00000015772	ENSATEG00000015787	ENSATEG00000026622	ENSATEG00000015871
Siamese fighting fish	MODERN SPECIES	10	cyp20a1 (ENSBSLG00000004024)	tmem237b (ENSBSLG00000003916)	MPP4 (ENSBSLG00000003898)	ALS2 (ENSBSLG00000003776)	CHRNA2 (ENSBSLG00000003586)	zgc:113142 (ENSBSLG00000003212)	inpp4ab (ENSBSLG00000003185)	ENSBSLG00000002627 ##23	ENSBSLG00000001877	NR4A2 (ENSBSLG00000001870)	gpd2 (ENSBSLG00000001802)	OSBPL11 (ENSBSLG00000001729)	gpd1c (ENSBSLG00000001710)	NCKAP5 (ENSBSLG00000001671)	LYPD1 (ENSBSLG00000001663)	actr3 (ENSBSLG00000001636) #22	pou3f3b (ENSBSLG00000001618)	mrps9 (ENSBSLG00000001466)	ENSBSLG00000001411	FAM171B (ENSBSLG00000001401)	ENSBSLG00000001392	ENSBSLG00000001375	ENSBSLG00000001320	ENSBSLG00000001294	pwp2h (ENSBSLG00000001247)	eed (ENSBSLG00000000888)	ATP7B (ENSBSLG00000000664)	ENSBSLG00000000540	LRRC3 (ENSBSLG00000000527)	ENSBSLG00000000465	ENSBSLG00000000444
Zig-zag eel	MODERN SPECIES	11	ENSMAMG00000027293	ENSMAMG00000022338	ENSMAMG00000022336	ENSMAMG00000022335	ENSMAMG00000022334	ENSMAMG00000022327	ENSMAMG00000022325	ENSMAMG00000022323	ENSMAMG00000022320	ENSMAMG00000022315	ENSMAMG00000022309	ENSMAMG00000022306	ENSMAMG00000022304	ENSMAMG00000022299	ENSMAMG00000022296	ENSMAMG00000022293 #22	ENSMAMG00000022292	ENSMAMG00000022291	mrps9 (ENSMAMG00000022287)	ENSMAMG00000022284	zc3h13 (ENSMAMG00000022274)	cpb2 (ENSMAMG00000022271)	alg11 (ENSMAMG00000022268)	spp2 (ENSMAMG00000022266)	raph1b (ENSMAMG00000022248)	ENSMAMG00000022240	ENSMAMG00000022239	mdh1b (ENSMAMG00000022235)	retreg2 (ENSMAMG00000022232)	ENSMAMG00000022222	cnppd1 (ENSMAMG00000022216)
Ovalentaria	ANCESTRAL SPECIES	23	ENSGT00940000155408.o.b	ENSGT00940000155235.k.b	ENSGT00940000165586.b	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b #22	ENSGT00940000155065.yb #22	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00940000177931	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d
Ovalentaria_B	ANCESTRAL SPECIES	22	ENSGT00940000155408.o.b	ENSGT00940000155235.k.b	ENSGT00940000165586.b	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b #22	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00940000155675.p.b	ENSGT00940000177931	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b
Pomacentridae	ANCESTRAL SPECIES	111	ENSGT00940000155235.k.b	ENSGT00940000165586.b	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00390000011204	ENSGT00940000164385.a.a.a.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b #22	ENSGT00940000154317.b	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a	ENSGT00940000154840.b.f.c.a	ENSGT01100000263585	ENSGT00940000154840.b.f.c.b	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00390000005935
Pomacentridae_A	ANCESTRAL SPECIES	115	ENSGT00940000155235.k.b	ENSGT00940000165586.b	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b.e	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00390000011204	ENSGT00940000164385.a.a.a.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b #22	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a	ENSGT00940000154840.b.f.c.a	ENSGT01100000263585.h	ENSGT00940000154840.b.f.c.b	ENSGT01100000263585.g	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00390000005935
Amphiprion	ANCESTRAL SPECIES	135	ENSGT00940000155235.k.b	ENSGT00940000165586.b	ENSGT00940000159224.b.e	ENSGT00940000154695.d.b.b.e	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00390000011204	ENSGT00940000164385.a.a.a.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b #22	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00940000154790.a.a.a	ENSGT00940000154840.b.f.c.a	ENSGT01100000263585.h	ENSGT00940000154840.b.f.c.b	ENSGT01100000263585.g	ENSGT00940000156702.a.b.b	ENSGT01040000240451.a.a.d	ENSGT00940000163418.D	ENSGT00390000005935
Orange clownfish	MODERN SPECIES	16	klf7a (ENSAPEG00000012825)	si:ch211-93g23.2 (ENSAPEG00000012843)	RAMP1 (ENSAPEG00000012854)	erbb4a (ENSAPEG00000012873)	lancl1 (ENSAPEG00000012953)	mylz3 (ENSAPEG00000012988)	acadl (ENSAPEG00000013016)	ENSAPEG00000013075	UNC80 (ENSAPEG00000013145)	mrps9 (ENSAPEG00000013413)	pou3f3b (ENSAPEG00000013456)	OSBPL11 (ENSAPEG00000013486)	gpd1c (ENSAPEG00000013535)	NCKAP5 (ENSAPEG00000013630)	LYPD1 (ENSAPEG00000013659)	actr3 (ENSAPEG00000013673) #22	FILIP1L (ENSAPEG00000013770)	ENSAPEG00000013789	ENSAPEG00000013811	ccdc28a (ENSAPEG00000013881)	ENSAPEG00000013974	ATP1A1 (ENSAPEG00000014030)	ENSAPEG00000014118	ENSAPEG00000014141	obsl1a (ENSAPEG00000014228)	CTDSP1 (ENSAPEG00000014300)	spega (ENSAPEG00000014333)	inha (ENSAPEG00000014437)	ENSAPEG00000014463	NCAM2 (ENSAPEG00000014541)	arl13b (ENSAPEG00000014654)
Clown anemonefish	MODERN SPECIES	483										mrps9 (ENSAOCG00000017749)	pou3f3b (ENSAOCG00000017762)	OSBPL11 (ENSAOCG00000001954)	gpd1c (ENSAOCG00000017832)	NCKAP5 (ENSAOCG00000017870)	LYPD1 (ENSAOCG00000017891)	actr3 (ENSAOCG00000017943) #22
Spiny chromis	MODERN SPECIES	3027															LYPD1 (ENSAPOG00000014690)	actr3 (ENSAPOG00000014763) #22
Bicolor damselfish	MODERN SPECIES	858												OSBPL11 (ENSSPAG00000021023)	gpd1c (ENSSPAG00000021055)	NCKAP5 (ENSSPAG00000021074)	LYPD1 (ENSSPAG00000021097)	actr3 (ENSSPAG00000021107) #22
Cichlidae	ANCESTRAL SPECIES	27	ENSGT00940000155408.o.b	ENSGT00940000155235.k.b	ENSGT00940000165586.b	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b #22	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00940000157360.c	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00940000155675.p.b	ENSGT00940000177931	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	10	ENSGT00940000155408.o.b	ENSGT00940000155235.k.b	ENSGT00940000165586.b	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b #22	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00940000157360.c	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00940000177931	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	16	ENSGT00940000155408.o.b	ENSGT00940000155235.k.b	ENSGT00940000165586.b	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b #22	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00940000157360.c	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00940000177931	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b
Haplochromini	ANCESTRAL SPECIES	41	ENSGT00940000155408.o.b	ENSGT00940000155235.k.b	ENSGT00940000165586.b	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b #22	ENSGT00390000017581.b.b	ENSGT00950000182812.B.a.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00940000157360.c	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00940000177931	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d
Haplochromini_A	ANCESTRAL SPECIES	76	ENSGT00940000155408.o.b	ENSGT00940000155235.k.b	ENSGT00940000165586.b	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b #22	ENSGT00390000017581.b.b	ENSGT00950000182812.B.a.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00940000157360.c	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d
Haplochromini_B	ANCESTRAL SPECIES	91	ENSGT00940000155408.o.b	ENSGT00940000155235.k.b	ENSGT00940000165586.b	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b #22	ENSGT00390000017581.b.b	ENSGT00950000182812.B.a.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00940000157360.c	ENSGT00940000165235.a.a	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d
Zebra mbuna	MODERN SPECIES	1105	RAMP1 (ENSMZEG00005014637)	erbb4a (ENSMZEG00005014678)	ENSMZEG00005014764	ENSMZEG00005014775	ENSMZEG00005014785	lancl1 (ENSMZEG00005014788)	mylz3 (ENSMZEG00005014804)	acadl (ENSMZEG00005014822)	ENSMZEG00005014849	UNC80 (ENSMZEG00005015080)	ENSMZEG00005015129	OSBPL11 (ENSMZEG00005015141)	gpd1c (ENSMZEG00005015157)	NCKAP5 (ENSMZEG00005015180)	LYPD1 (ENSMZEG00005015213)	ACTR3 (ENSMZEG00005015223) #22	ENSMZEG00005015233	ENSMZEG00005015241	pou3f3b (ENSMZEG00005015253)	mrps9 (ENSMZEG00005015264)	SLAIN1 (ENSMZEG00005015282)	ENSMZEG00005015297	inpp4ab (ENSMZEG00005015313)	ENSMZEG00005015345	ENSMZEG00005015382	ENSMZEG00005015426	pwp2h (ENSMZEG00005015448)	eed (ENSMZEG00005015490)	ENSMZEG00005015497	gpd2 (ENSMZEG00005015505)	nr4a2b (ENSMZEG00005015529)
P. nyererei	MODERN SPECIES	413	klf7a (ENSPNYG00000009394)	si:ch211-93g23.2 (ENSPNYG00000009369)	RAMP1 (ENSPNYG00000009353)	erbb4a (ENSPNYG00000009235)	ENSPNYG00000009218	lancl1 (ENSPNYG00000009191)	mylz3 (ENSPNYG00000009169)	acadl (ENSPNYG00000009136)	ENSPNYG00000009098	ENSPNYG00000009075	ENSPNYG00000009023	OSBPL11 (ENSPNYG00000008964)	gpd1c (ENSPNYG00000008925)	NCKAP5 (ENSPNYG00000008855)	LYPD1 (ENSPNYG00000008826)	actr3 (ENSPNYG00000008790) #22	ENSPNYG00000008774	ENSPNYG00000008750	pou3f3b (ENSPNYG00000008739)	mrps9 (ENSPNYG00000008697)	ENSPNYG00000008662	ENSPNYG00000008633	INPP4A (ENSPNYG00000008561)	ENSPNYG00000008513	ENSPNYG00000008421	ENSPNYG00000008393	pwp2h (ENSPNYG00000008379)	eed (ENSPNYG00000008359)
Nile tilapia	MODERN SPECIES	14	CREB1 (ENSONIG00000013380)	klf7a (ENSONIG00000013381)	ENSONIG00000035269	si:ch211-93g23.2 (ENSONIG00000013383)	RAMP1 (ENSONIG00000013384)	erbb4a (ENSONIG00000013385)	lancl1 (ENSONIG00000039677)	mylz3 (ENSONIG00000013405)	acadl (ENSONIG00000013415)	ENSONIG00000031428	ENSONIG00000013432	OSBPL11 (ENSONIG00000013436)	NCKAP5 (ENSONIG00000013447)	gpd1c (ENSONIG00000013442)	LYPD1 (ENSONIG00000042130)	actr3 (ENSONIG00000013451) #22	ENSONIG00000040824	pou3f3b (ENSONIG00000033851)	mrps9 (ENSONIG00000013457)	SLAIN1 (ENSONIG00000013458)	ENSONIG00000013460	inpp4ab (ENSONIG00000007183)	ENSONIG00000007178	ENSONIG00000007142	ENSONIG00000007140	pwp2h (ENSONIG00000007136)	eed (ENSONIG00000007134)	ATP7B (ENSONIG00000012121)	LRRC3 (ENSONIG00000021036)	ENSONIG00000012122	ENSONIG00000041348
Pinecone sodierfish	MODERN SPECIES	11	si:ch211-93g23.2 (ENSMMDG00005000637)	RAMP1 (ENSMMDG00005000623)	ENSMMDG00005000615	ERBB4 (ENSMMDG00005000605)	lancl1 (ENSMMDG00005000594)	mylz3 (ENSMMDG00005000540)	acadl (ENSMMDG00005000534)	acadl (ENSMMDG00005000529)	ENSMMDG00005000523	UNC80 (ENSMMDG00005000474)	SNX4 (ENSMMDG00005000443)	OSBPL11 (ENSMMDG00005000421)	gpd1c (ENSMMDG00005000403)	NCKAP5 (ENSMMDG00005000392)	LYPD1 (ENSMMDG00005000386)	actr3 (ENSMMDG00005000371) #22	ENSMMDG00005000359	pou3f3b (ENSMMDG00005000354)	mrps9 (ENSMMDG00005000347)	SLAIN1 (ENSMMDG00005000336)	FAM171B (ENSMMDG00005000328)	zswim2 (ENSMMDG00005000318)	ENSMMDG00005000123	ENSMMDG00005000081	pwp2h (ENSMMDG00005007880)	eed (ENSMMDG00005007873)	ATP7B (ENSMMDG00005007871)	LRRC3 (ENSMMDG00005007869)	ENSMMDG00005007814	ENSMMDG00005007805	gpd2 (ENSMMDG00005007801)
Euacanthomorphacea	ANCESTRAL SPECIES	43	ENSGT00940000177543	ENSGT00730000111249	ENSGT00940000155868.f	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.yb #22	ENSGT00940000155065.xb.a #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166277	ENSGT00940000166042.b	ENSGT00940000171532	ENSGT00940000156462.B.d	ENSGT00940000156462.B.c.a.b.b	ENSGT00940000156462.B.c.a.a	ENSGT00940000156462.C.`b.a	ENSGT00950000183138.a.b.r.b	ENSGT00940000177438	ENSGT00940000161839	ENSGT00530000063564.b.b.b	ENSGT00530000063564.b.a.b
Pinecone sodierfish	MODERN SPECIES	13	hao2 (ENSMMDG00005015896)	wars2 (ENSMMDG00005015901)	tbx15 (ENSMMDG00005015903)	ENSMMDG00005015905	ENSMMDG00005015907	wdr3 (ENSMMDG00005015915)	gdap2 (ENSMMDG00005015965)	tent5c (ENSMMDG00005015979)	man1a2 (ENSMMDG00005016023)	TRIM45 (ENSMMDG00005018590)	ENSMMDG00005018595	ENSMMDG00005018601	ENSMMDG00005018604	zgc:172295 (ENSMMDG00005018629)	ddx18 (ENSMMDG00005018937) #24	actr3 (ENSMMDG00005019427) #22	ENSMMDG00005019995 ##23	ENSMMDG00005020000 ##23	cops8 (ENSMMDG00005020001)	COL6A3 (ENSMMDG00005020010)	ENSMMDG00005020365	ENSMMDG00005020369	ENSMMDG00005020373	ENSMMDG00005020374	ENSMMDG00005020378	ENSMMDG00005020381	ENSMMDG00005020383	ENSMMDG00005020384	ENSMMDG00005020386	ENSMMDG00005020390	ENSMMDG00005020394
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00940000155065.yb #22
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00940000155065.yb #22
Ovalentaria	ANCESTRAL SPECIES	23	ENSGT00940000155235.k.b	ENSGT00940000165586.b	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000163454.a.a.a.b.b	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.xb.b #22	ENSGT00940000155065.yb #22	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000155675.p.b	ENSGT00940000177931	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b
Ovalentaria_B	ANCESTRAL SPECIES																	ENSGT00940000155065.yb #22
Cichlidae	DUPLICATION
Cichlidae	DUPLICATION
Cichlidae	ANCESTRAL SPECIES																	ENSGT00940000155065.yb.a.a #22
Pseudocrenilabrinae	ANCESTRAL SPECIES																	ENSGT00940000155065.yb.a.a #22
Pseudocrenilabrinae_A	ANCESTRAL SPECIES																	ENSGT00940000155065.yb.a.a #22
Lyretail cichlid	MODERN SPECIES	315									ENSNBRG00000017269	UNC80 (ENSNBRG00000017115)	ENSNBRG00000017069	OSBPL11 (ENSNBRG00000017006)	gpd1c (ENSNBRG00000016963)	NCKAP5 (ENSNBRG00000016948)	LYPD1 (ENSNBRG00000016930)	actr3 (ENSNBRG00000016906) #22	ENSNBRG00000016892	pou3f3b (ENSNBRG00000016867)	mrps9 (ENSNBRG00000016845)	SLAIN1 (ENSNBRG00000016815)	ENSNBRG00000016769	INPP4A (ENSNBRG00000016726)	ENSNBRG00000016687	ENSNBRG00000016673	ENSNBRG00000016650	ENSNBRG00000016629	pwp2h (ENSNBRG00000016527)	eed (ENSNBRG00000016506)	ATP7B (ENSNBRG00000016446)	ENSNBRG00000016409	ENSNBRG00000016366
Midas cichlid	MODERN SPECIES	1022	mettl21a (ENSACIG00000024035)	CREB1 (ENSACIG00000024044)	klf7a (ENSACIG00000024057)	si:ch211-93g23.2 (ENSACIG00000024058)	RAMP1 (ENSACIG00000024059)	erbb4a (ENSACIG00000024060)	lancl1 (ENSACIG00000024064)	mylz3 (ENSACIG00000024069)	acadl (ENSACIG00000024075)	ENSACIG00000024076	ENSACIG00000024077	OSBPL11 (ENSACIG00000024078)	gpd1c (ENSACIG00000024080)	NCKAP5 (ENSACIG00000024082)	LYPD1 (ENSACIG00000024083)	actr3 (ENSACIG00000024085) #22	ENSACIG00000024086	pou3f3b (ENSACIG00000024088)	mrps9 (ENSACIG00000024089)	ENSACIG00000024092	ENSACIG00000024094	inpp4ab (ENSACIG00000024097)	ENSACIG00000024101	ENSACIG00000024104	ENSACIG00000024105	ENSACIG00000024107	pwp2h (ENSACIG00000024109)	eed (ENSACIG00000024110)	ENSACIG00000024113
Cichlidae	ANCESTRAL SPECIES																	ENSGT00940000155065.yb.a.b #22
Pseudocrenilabrinae	ANCESTRAL SPECIES																	ENSGT00940000155065.yb.a.b #22
Pseudocrenilabrinae_A	ANCESTRAL SPECIES																	ENSGT00940000155065.yb.a.b #22
Lyretail cichlid	MODERN SPECIES	398										ENSNBRG00000011538	efnb2a (ENSNBRG00000011517)	arglu1a (ENSNBRG00000011489)	nifk (ENSNBRG00000011444)	ENSNBRG00000011399	ENSNBRG00000011374	actr3 (ENSNBRG00000011342) #22	ENSNBRG00000011301 #22	ENSNBRG00000011239 ##23	ENSNBRG00000011179 ##23	cops8 (ENSNBRG00000011147)	ENSNBRG00000010724	ENSNBRG00000010660	ENSNBRG00000010606
Cichlidae	ANCESTRAL SPECIES																	ENSGT00940000155065.yb.b #22
Midas cichlid	MODERN SPECIES	529																ACTR3 (ENSACIG00000007784) #22	ENSACIG00000007810 ##23	ENSACIG00000007937 ##23	cops8 (ENSACIG00000008022)	trim63b (ENSACIG00000008036)	ENSACIG00000008177	ENSACIG00000008636
Pseudocrenilabrinae	ANCESTRAL SPECIES																	ENSGT00940000155065.yb.b #22
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	14	ENSGT00910000144271.C.b	ENSGT00940000154817.b.a	ENSGT00940000159158	ENSGT00390000013973.A.a.c.a	ENSGT00940000159862.a	ENSGT00940000165735	ENSGT00950000182808.a.a.a.a.a	ENSGT00390000001083	ENSGT00960000187045	ENSGT00940000155868.f	ENSGT00730000111249	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.yb.b #22	ENSGT00940000155065.xb.a #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166277	ENSGT00940000171532	ENSGT01070000254188	ENSGT00940000156462.B.c.a.b.b.h	ENSGT00940000156462.B.c.a.a	ENSGT00940000156462.B.c.b	ENSGT00940000156462.A	ENSGT00940000156462.C.`b.a	ENSGT00950000183138.a.b.r.b	ENSGT00940000177438	ENSGT00940000161839	ENSGT00530000063564.b.b.b
Lyretail cichlid	MODERN SPECIES	398									ENSNBRG00000011538	efnb2a (ENSNBRG00000011517)	arglu1a (ENSNBRG00000011489)	nifk (ENSNBRG00000011444)	ENSNBRG00000011399	ENSNBRG00000011374	actr3 (ENSNBRG00000011342) #22	ENSNBRG00000011301 #22	ENSNBRG00000011239 ##23	ENSNBRG00000011179 ##23	cops8 (ENSNBRG00000011147)	ENSNBRG00000010724	ENSNBRG00000010660	ENSNBRG00000010606
Haplochromini	DUPLICATION
Haplochromini	ANCESTRAL SPECIES																	ENSGT00940000155065.yb.b.a #22
Burton s mouthbrooder	MODERN SPECIES	304	ENSHBUG00000004353	klf7a (ENSHBUG00000004389)	si:ch211-93g23.2 (ENSHBUG00000004418)	RAMP1 (ENSHBUG00000004428)	ERBB4 (ENSHBUG00000004534)	lancl1 (ENSHBUG00000004582)	mylz3 (ENSHBUG00000000111)	acadl (ENSHBUG00000004635)	ENSHBUG00000004642	UNC80 (ENSHBUG00000004774)	ENSHBUG00000004820	OSBPL11 (ENSHBUG00000004848)	gpd1c (ENSHBUG00000004876)	NCKAP5 (ENSHBUG00000004916)	LYPD1 (ENSHBUG00000004940)	actr3 (ENSHBUG00000004956) #22	ENSHBUG00000004970	ENSHBUG00000005011	pou3f3b (ENSHBUG00000000126)	mrps9 (ENSHBUG00000005067)	SLAIN1 (ENSHBUG00000005081)	FAM171B (ENSHBUG00000005092)	INPP4A (ENSHBUG00000005299)	ENSHBUG00000005353	ENSHBUG00000005415	ENSHBUG00000005434	ENSHBUG00000005457	pwp2h (ENSHBUG00000005530)	eed (ENSHBUG00000005542)	ENSHBUG00000005560	WDR49 (ENSHBUG00000005604)
Haplochromini_A	ANCESTRAL SPECIES																	ENSGT00940000155065.yb.b.a #22
Haplochromini_B	ANCESTRAL SPECIES																	ENSGT00940000155065.yb.b.a #22
Eastern happy	MODERN SPECIES	14	klf7a (ENSACLG00000009535)	si:ch211-93g23.2 (ENSACLG00000009543)	ENSACLG00000009550	RAMP1 (ENSACLG00000009561)	erbb4a (ENSACLG00000009657)	lancl1 (ENSACLG00000009724)	mylz3 (ENSACLG00000009730)	acadl (ENSACLG00000009736)	ENSACLG00000009755	UNC80 (ENSACLG00000010248)	ENSACLG00000010303	OSBPL11 (ENSACLG00000010308)	gpd1c (ENSACLG00000010329)	NCKAP5 (ENSACLG00000010348)	LYPD1 (ENSACLG00000010372)	actr3 (ENSACLG00000010384) #22	ENSACLG00000010396	ENSACLG00000010404	pou3f3b (ENSACLG00000010758)	ENSACLG00000010806	mrps9 (ENSACLG00000010815)	SLAIN1 (ENSACLG00000010893)	ENSACLG00000010924	inpp4ab (ENSACLG00000010937)	ENSACLG00000010997	ENSACLG00000011037	ENSACLG00000011140	pwp2h (ENSACLG00000011425)	eed (ENSACLG00000011473)	ATP7B (ENSACLG00000011489)	ENSACLG00000011525
Haplochromini	ANCESTRAL SPECIES																	ENSGT00940000155065.yb.b.b #22
Haplochromini_A	ANCESTRAL SPECIES	19	ENSGT00910000144271.C.b	ENSGT00940000154817.b.a	ENSGT00940000159158	ENSGT00390000013973.A.a.c.a	ENSGT00940000159862.a	ENSGT00940000165735	ENSGT00950000182808.a.a.a.a.a.o.b	ENSGT00950000182808.a.a.a.a.a.o.a	ENSGT00390000001083	ENSGT00940000155868.f	ENSGT00730000111249	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.yb.b.b #22	ENSGT00940000155065.xb.a #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166277	ENSGT01070000254188	ENSGT00940000156462.B.c.a.b.b.h	ENSGT00940000156462.B.c.a.a	ENSGT00940000156462.C.`b.a	ENSGT00950000183138.a.b.r.b	ENSGT00940000177438	ENSGT00940000161839	ENSGT00530000063564.b.b.b	ENSGT00530000063564.b.a.b.a	ENSGT00940000158493.p	ENSGT00530000063564.b.a.b.b
Haplochromini_B	ANCESTRAL SPECIES	39	ENSGT00940000154817.b.a	ENSGT00940000159158	ENSGT00390000013973.A.a.c.a	ENSGT00940000159862.a	ENSGT00940000165735	ENSGT00950000182808.a.a.a.a.a.o.b	ENSGT00950000182808.a.a.a.a.a.o.a	ENSGT00390000001083	ENSGT00950000182996.b.b.c.b.b.a.b.d.b	ENSGT00940000155868.f	ENSGT00730000111249	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.yb.b.b #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166277	ENSGT00940000156462.B.c.a.b.b.h	ENSGT00940000156462.B.c.a.b.b.g	ENSGT00940000156462.B.c.a.a	ENSGT00950000183138.a.b.r.b	ENSGT00940000177438	ENSGT00940000161839	ENSGT00530000063564.b.b.b	ENSGT00940000158493.o.a	ENSGT00390000004145.b	ENSGT00390000016484	ENSGT00940000155466.e.b	ENSGT00940000154014.b.b
Eastern happy	MODERN SPECIES	7	clasp1a (ENSACLG00000022095)	tfcp2l1 (ENSACLG00000022460)	ENSACLG00000022501	ENSACLG00000022539	inhbb (ENSACLG00000022628)	ENSACLG00000022640	ENSACLG00000022671	slc10a2 (ENSACLG00000022706)	ENSACLG00000022759	gtpbp8 (ENSACLG00000022779)	ENSACLG00000022798	ENSACLG00000022861	ENSACLG00000022899	efnb2a (ENSACLG00000022904)	arglu1a (ENSACLG00000000047)	actr3 (ENSACLG00000000154) #22	nifk (ENSACLG00000000228)	ENSACLG00000000263	zgc:172295 (ENSACLG00000000277)	ddx18 (ENSACLG00000000352) #24	ENSACLG00000000393	ENSACLG00000000438 ##23	ENSACLG00000000592 ##23	cops8 (ENSACLG00000000629)	COL6A3 (ENSACLG00000000677)	ENSACLG00000001026	ENSACLG00000001055	ENSACLG00000001083	MLPH (ENSACLG00000001132)	ENSACLG00000001207	RAB17 (ENSACLG00000001218)
Zebra mbuna	MODERN SPECIES	1098	ENSMZEG00005012836	inhbb (ENSMZEG00005012868)	ENSMZEG00005012879	slc10a2 (ENSMZEG00005012894)	slc10a2 (ENSMZEG00005012920)	slc10a2 (ENSMZEG00005012959)	slc10a2 (ENSMZEG00005012987)	gtpbp8 (ENSMZEG00005012995)	ENSMZEG00005013008	efnb2a (ENSMZEG00005013024)	arglu1a (ENSMZEG00005013034)	nifk (ENSMZEG00005013057)	ENSMZEG00005013132	zgc:172295 (ENSMZEG00005013155)	ddx18 (ENSMZEG00005013189) #24	actr3 (ENSMZEG00005013235) #22	ENSMZEG00005013302 ##23	ENSMZEG00005013582	ENSMZEG00005013593 ##23	ENSMZEG00005013619	ENSMZEG00005013630	ENSMZEG00005013637	ENSMZEG00005013645	ENSMZEG00005013647	MLPH (ENSMZEG00005013661)	ENSMZEG00005013672	RAB17 (ENSMZEG00005013677)	LRRFIP1 (ENSMZEG00005013703)	tyw5 (ENSMZEG00005013950)	maip1 (ENSMZEG00005013965)	ENSMZEG00005013978
Atherinomorphae	ANCESTRAL SPECIES	13	ENSGT00390000016499	ENSGT00730000111249	ENSGT00940000155868.f	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.yb #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166042.b	ENSGT00940000166277	ENSGT01070000254188	ENSGT00940000156462.B.d	ENSGT00940000156462.B.c.a.b.b	ENSGT00940000156462.B.c.b	ENSGT00940000156462.B.c.a.a	ENSGT00940000156462.A	ENSGT00950000183138.a.b.r.b	ENSGT00940000161839	ENSGT00530000063564.b.b.b	ENSGT00530000063564.b.a.b	ENSGT00940000158493
Oryzias	ANCESTRAL SPECIES																	ENSGT00940000155065.yb #22
Oryzias_b	ANCESTRAL SPECIES	78	ENSGT01030000234640.a.b.a.a.a.a.a.a.a.a.e.b	ENSGT01030000234640.a.b.a.a.a.a.a.b.a.b.a.a.g.b	ENSGT01030000234640.a.b.a.a.a.a.a.b.a.b.a.a.g.a.a.a	ENSGT01030000234640.a.b.a.a.a.a.a.b.a.b.a.a.h.a	ENSGT01030000234640.a.b.a.a.a.a.a.b.a.b.a.a.g.a.a.b	ENSGT00950000183023.A.f.a.b.a.a.b	ENSGT00940000156444.d	ENSGT00940000154334	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00940000156449.b.b	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.yb #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166277	ENSGT00940000156462.B.d	ENSGT00940000156462.B.c.b	ENSGT00940000156462.A	ENSGT00950000183138.a.b.r.b
Javanese ricefish	MODERN SPECIES	13	ENSOJAG00000018320	ENSOJAG00000018346	ENSOJAG00000018352	ENSOJAG00000018377	ENSOJAG00000018402	ENSOJAG00000018418	ENSOJAG00000018428	MPP4 (ENSOJAG00000018455)	TRIM45 (ENSOJAG00000018740)	man1a2 (ENSOJAG00000018870)	tent5c (ENSOJAG00000019701)	gdap2 (ENSOJAG00000019711)	ENSOJAG00000019849	zgc:172295 (ENSOJAG00000019916)	ddx18 (ENSOJAG00000020481) #24	actr3 (ENSOJAG00000020595) #22	ENSOJAG00000021044 ##23	ENSOJAG00000021139 ##23	cops8 (ENSOJAG00000021166)	COL6A3 (ENSOJAG00000021179)	ENSOJAG00000021265	ENSOJAG00000021289	ENSOJAG00000021300	ENSOJAG00000021317
Oryzias_a	ANCESTRAL SPECIES																	ENSGT00940000155065.yb #22
Chinese medaka	MODERN SPECIES	229				ENSOSIG00000000603	ENSOSIG00000000607	ENSOSIG00000000615	ENSOSIG00000000616	si:dkey-276j7.1 (ENSOSIG00000000617)	ENSOSIG00000000618	mrps9 (ENSOSIG00000000621)	pou3f3b (ENSOSIG00000001036)	OSBPL11 (ENSOSIG00000001053)	gpd1c (ENSOSIG00000003177)	NCKAP5 (ENSOSIG00000003206)	LYPD1 (ENSOSIG00000003228)	ACTR3 (ENSOSIG00000003238) #22	COL8A1 (ENSOSIG00000003281)	ENSOSIG00000003286	FILIP1L (ENSOSIG00000003291)	ccdc28a (ENSOSIG00000003296)	ENSOSIG00000003306	ATP1A1 (ENSOSIG00000003574)
Cyprinodontiformes	ANCESTRAL SPECIES	15	ENSGT00390000016499	ENSGT00730000111249	ENSGT00940000155868.f	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.yb #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166042.b	ENSGT00940000166277	ENSGT00940000156462.C.ab	ENSGT00940000156462.B.c.b	ENSGT00940000156462.A	ENSGT00950000183138.a.b.r.b	ENSGT00940000161839	ENSGT00530000063564.b.b.b	ENSGT00530000063564.b.a.b	ENSGT00940000158493	ENSGT00390000004145.b	ENSGT00390000016484	ENSGT00940000155466.e.b
Cyprinodontoidei	ANCESTRAL SPECIES	30							ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a.m	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.yb #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166277	ENSGT00940000166042.b	ENSGT00940000173891	ENSGT00940000156462.C.ab	ENSGT00940000156462.B.c.b	ENSGT00940000156462.B.c.a.a	ENSGT00940000156462.A	ENSGT00950000183138.a.b.r.b	ENSGT00940000161839	ENSGT00530000063564.b.a.b	ENSGT00940000158493	ENSGT00390000004145.b	ENSGT00390000016484
Poeciliinae	ANCESTRAL SPECIES	29								ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.yb #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166277	ENSGT00940000173891	ENSGT00940000156462.C.ab	ENSGT00940000156462.B.c.b	ENSGT00940000156462.B.c.a.a	ENSGT00940000156462.A	ENSGT00950000183138.a.b.r.b	ENSGT00530000063564.b.b.b	ENSGT00530000063564.b.a.b	ENSGT00940000158493	ENSGT00390000004145.b	ENSGT00390000016484	ENSGT00940000155466.e.b
Platyfish	DUPLICATION
Platyfish	MODERN SPECIES	16	klf7a (ENSXMAG00000023355)	si:ch211-93g23.2 (ENSXMAG00000007855)	RAMP1 (ENSXMAG00000028360)	erbb4a (ENSXMAG00000007866)	lancl1 (ENSXMAG00000007902)	mylz3 (ENSXMAG00000029420)	acadl (ENSXMAG00000004697)	ENSXMAG00000026703	acadl (ENSXMAG00000026099)	ENSXMAG00000014512	ENSXMAG00000025117	OSBPL11 (ENSXMAG00000007933)	gpd1c (ENSXMAG00000007949)	NCKAP5 (ENSXMAG00000003034)	LYPD1 (ENSXMAG00000007958)	ACTR3 (ENSXMAG00000007959) #22	ENSXMAG00000026038	ENSXMAG00000022133	pou3f3b (ENSXMAG00000021922)	mrps9 (ENSXMAG00000007974)	ENSXMAG00000007979	ENSXMAG00000022497	zswim2 (ENSXMAG00000024598)	ENSXMAG00000007989	ENSXMAG00000007999	ENSXMAG00000008123	pwp2h (ENSXMAG00000008124)	eed (ENSXMAG00000008149)	ATP7B (ENSXMAG00000008157)	LRRC3 (ENSXMAG00000019730)	ENSXMAG00000008175
Platyfish	MODERN SPECIES	21							inhbb (ENSXMAG00000002125)	ENSXMAG00000022953	ENSXMAG00000023889	gli2a (ENSXMAG00000026745)	clasp1a (ENSXMAG00000005216)	nifk (ENSXMAG00000023401)	ENSXMAG00000012805	zgc:172295 (ENSXMAG00000007505)	ddx18 (ENSXMAG00000018003) #24	actr3 (ENSXMAG00000018018) #22	ENSXMAG00000028276	ENSXMAG00000017085 ##23	ENSXMAG00000017079 ##23	ENSXMAG00000028467	cops8 (ENSXMAG00000026428)	ENSXMAG00000027881	ENSXMAG00000024080	ENSXMAG00000022487	ENSXMAG00000023767	ENSXMAG00000015199	ENSXMAG00000030007	ENSXMAG00000023016	ENSXMAG00000021881	ENSXMAG00000021560	ENSXMAG00000025272
Poecilia	ANCESTRAL SPECIES	109							ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00940000159158	ENSGT00940000154817.b.a.d	ENSGT00940000154817.b.a.c	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.yb #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166277
NAME_6	ANCESTRAL SPECIES																	ENSGT00940000155065.yb #22
Sailfin molly	MODERN SPECIES	3275																actr3 (ENSPLAG00000003126) #22
Guppy	DUPLICATION
Guppy	MODERN SPECIES	66													ENSPREG00000008935	ddx18 (ENSPREG00000008894) #24	actr3 (ENSPREG00000008868) #22	ENSPREG00000008851 #22	ENSPREG00000008844 ##23
Guppy	MODERN SPECIES	66														ENSPREG00000008935	ddx18 (ENSPREG00000008894) #24	actr3 (ENSPREG00000008868) #22	ENSPREG00000008851 #22	ENSPREG00000008844 ##23
NAME_4	ANCESTRAL SPECIES	328							ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a.m	ENSGT00940000159158	ENSGT00940000154817.a	ENSGT00940000154817.b.a.f	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.yb #22
Mummichog	MODERN SPECIES	1337														ddx18 (ENSFHEG00000008433) #24	ddx18 (ENSFHEG00000008442) #24	actr3 (ENSFHEG00000008498) #22
Sheepshead minnow	DUPLICATION
Sheepshead minnow	MODERN SPECIES	913						gli2a (ENSCVAG00000018681)	ENSCVAG00000018560	tfcp2l1 (ENSCVAG00000018551)	ENSCVAG00000018460	ENSCVAG00000018419	nifk (ENSCVAG00000018411)	ENSCVAG00000018381	zgc:172295 (ENSCVAG00000018064)	ENSCVAG00000017961	ddx18 (ENSCVAG00000017936) #24	ENSCVAG00000017919 #22	actr3 (ENSCVAG00000017879) #22	ENSCVAG00000017855 ##23
Sheepshead minnow	MODERN SPECIES	913					gli2a (ENSCVAG00000018681)	ENSCVAG00000018560	tfcp2l1 (ENSCVAG00000018551)	ENSCVAG00000018460	ENSCVAG00000018419	nifk (ENSCVAG00000018411)	ENSCVAG00000018381	zgc:172295 (ENSCVAG00000018064)	ENSCVAG00000017961	ddx18 (ENSCVAG00000017936) #24	ENSCVAG00000017919 #22	actr3 (ENSCVAG00000017879) #22	ENSCVAG00000017855 ##23
Aplocheiloidei	ANCESTRAL SPECIES	124	ENSGT00940000158231.l	ENSGT00390000016499	ENSGT00730000111249	ENSGT00940000155868.f	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.yb #22	ENSGT00940000155065.xb.a #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166042.b	ENSGT00940000166277
Turquoise killifish	DUPLICATION
Turquoise killifish	MODERN SPECIES	1613	KLF7 (ENSNFUG00015003179)	RAMP1 (ENSNFUG00015003186)	ERBB4 (ENSNFUG00015003347)	ENSNFUG00015003800	ENSNFUG00015003802	ENSNFUG00015003804	ENSNFUG00015003808	lancl1 (ENSNFUG00015003811)	MYLZ3 (ENSNFUG00015003820)	ACADL (ENSNFUG00015003830)	ENSNFUG00015003871	OSBPL11 (ENSNFUG00015003923)	GPD1C (ENSNFUG00015003969)	NCKAP5 (ENSNFUG00015003981)	LYPD1 (ENSNFUG00015003990)	actr3 (ENSNFUG00015003996) #22	ENSNFUG00015004005	ENSNFUG00015004012	ENSNFUG00015004015	POU3F3B (ENSNFUG00015004017)	mrps9 (ENSNFUG00015004033)	SLAIN1 (ENSNFUG00015004070)	jagn1b (ENSNFUG00015004083)	ENSNFUG00015004097	ENSNFUG00015004185	WBP4 (ENSNFUG00015004530)	MTRF1 (ENSNFUG00015004546)	TSC22D1 (ENSNFUG00015004555)	NELFA (ENSNFUG00015004572)	FAAH2 (ENSNFUG00015004612)	TESK1 (ENSNFUG00015004650)
Turquoise killifish	MODERN SPECIES	1617	ENSNFUG00015007514	GTPBP8 (ENSNFUG00015007510)	SLC10A2 (ENSNFUG00015007503)	Nfu_g_1_019255 (ENSNFUG00015006527)	ENSNFUG00015006426	ENSNFUG00015006414	MKI67IP (ENSNFUG00015006411)	ENSNFUG00015006402	ENSNFUG00015006392	clasp1a (ENSNFUG00015006175)	tfcp2l1 (ENSNFUG00015005996)	Nfu_g_1_019270 (ENSNFUG00015005977)	gli2a (ENSNFUG00015005941)	INHBB (ENSNFUG00015005925)	ddx18 (ENSNFUG00015005910) #24	ENSNFUG00015005394 #22	ENSNFUG00015005221 ##23	ENSNFUG00015005209	ENSNFUG00015005096 ##23	coq9 (ENSNFUG00015005073)	txndc5 (ENSNFUG00015004822)	BMP6 (ENSNFUG00015004744)	ECHDC3 (ENSNFUG00015004733)	PDCD6 (ENSNFUG00015004719)	rec8b (ENSNFUG00015004710)	si:ch211-196f5.2 (ENSNFUG00015004700)	IPO4 (ENSNFUG00015004585)	nanog (ENSNFUG00015004574)	TM9SF1 (ENSNFUG00015004566)	ENSNFUG00015004562	FEN1 (ENSNFUG00015004542)
Percomorphaceae_C	ANCESTRAL SPECIES	13	ENSGT00940000177543	ENSGT00730000111249	ENSGT00940000155868.f	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.yb #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166042.b	ENSGT00940000166277	ENSGT00940000171532	ENSGT00940000156462.B.d	ENSGT00940000156462.B.c.a.b.b	ENSGT00940000156462.B.c.b	ENSGT00940000156462.B.c.a.a	ENSGT00940000156462.A	ENSGT00950000183138.a.b.r.b	ENSGT00940000177438	ENSGT00940000161839	ENSGT00530000063564.b.b.b	ENSGT00940000158493
Percomorphaceae_D	ANCESTRAL SPECIES	12	ENSGT00940000177543	ENSGT00730000111249	ENSGT00940000155868.f	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.yb #22	ENSGT00940000155065.xb.a #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166042.b	ENSGT00940000166277	ENSGT00940000171532	ENSGT00940000156462.B.d	ENSGT00940000156462.B.c.a.b.b	ENSGT00940000156462.B.c.b	ENSGT00940000156462.B.c.a.a	ENSGT00940000156462.A	ENSGT00950000183138.a.b.r.b	ENSGT00940000177438	ENSGT00940000161839	ENSGT00530000063564.b.b.b
Carangaria	ANCESTRAL SPECIES																	ENSGT00940000155065.yb #22
Carangaria_A	ANCESTRAL SPECIES																	ENSGT00940000155065.yb #22
Barramundi perch	MODERN SPECIES	111	ENSLCAG00010011785	ENSLCAG00010011787	ENSLCAG00010011790	hpxa (ENSLCAG00010011795)	olig1 (ENSLCAG00010011800)	olig2 (ENSLCAG00010011803)	ENSLCAG00010011806	ENSLCAG00010011807	ENSLCAG00010011815	tfcp2l1 (ENSLCAG00010011831)	clasp1a (ENSLCAG00010012621)	nifk (ENSLCAG00010014787)	ENSLCAG00010014795	zgc:172295 (ENSLCAG00010014881)	ddx18 (ENSLCAG00010015198) #24	actr3 (ENSLCAG00010015392) #22
Pleuronectoidei	ANCESTRAL SPECIES	47	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000157249	ENSGT00940000155408.o.b	ENSGT00940000155235.k.b	ENSGT00940000159224.b	ENSGT00940000154695.d.b.b	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a.p	ENSGT00940000157652.p	ENSGT00940000156597.a.b.a	ENSGT00640000091496	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.yb #22	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000168325.d	ENSGT00950000183140.a.a	ENSGT00550000074981	ENSGT00510000047334	ENSGT00940000155749.d	ENSGT00940000154360.A.b.b	ENSGT00940000162768.B.b	ENSGT00390000004923.C
Turbot	DUPLICATION
Turbot	MODERN SPECIES	5	ENSSMAG00000016847	ENSSMAG00000016812	arglu1a (ENSSMAG00000016795)	efnb2a (ENSSMAG00000016754)	gtpbp8 (ENSSMAG00000002103)	slc10a2 (ENSSMAG00000002074)	ENSSMAG00000002063	INHBB (ENSSMAG00000002053)	gli2a (ENSSMAG00000002040)	tfcp2l1 (ENSSMAG00000001965)	clasp1a (ENSSMAG00000001880)	nifk (ENSSMAG00000001845)	ENSSMAG00000001792	ENSSMAG00000001675	ENSSMAG00000001652 #24	ENSSMAG00000001627 #22	ENSSMAG00000001475	ENSSMAG00000029835	ENSSMAG00000001389 ##23	ENSSMAG00000001341 ##23	trim63b (ENSSMAG00000024050)	cops8 (ENSSMAG00000031368)	ENSSMAG00000037914	ENSSMAG00000001091	ENSSMAG00000001027	COL6A3 (ENSSMAG00000000810)	ENSSMAG00000031033	MLPH (ENSSMAG00000000783)	ENSSMAG00000000758	RAB17 (ENSSMAG00000018614)	ENSSMAG00000018506
Turbot	MODERN SPECIES		ENSSMAG00000010950	METTL21A (ENSSMAG00000010945)	ENSSMAG00000010920	KLF7 (ENSSMAG00000010904)	ENSSMAG00000036077	erbb4a (ENSSMAG00000010805)	LANCL1 (ENSSMAG00000010780)	mylz3 (ENSSMAG00000010764)	ACADL (ENSSMAG00000010744)	ENSSMAG00000010026	ENSSMAG00000028385	ENSSMAG00000010077	ENSSMAG00000010137	ENSSMAG00000010164	ENSSMAG00000033279	ENSSMAG00000010624 #22	ENSSMAG00000010680	ENSSMAG00000010693	ENSSMAG00000010706	ENSSMAG00000010712	ENSSMAG00000031472	ENSSMAG00000028603	zswim2 (ENSSMAG00000011667)	ENSSMAG00000011680	ENSSMAG00000011709	ENSSMAG00000030332	ENSSMAG00000011793	ENSSMAG00000011839	ENSSMAG00000011872	ENSSMAG00000011898	ENSSMAG00000011922
Anabantaria	ANCESTRAL SPECIES	14			ENSGT00730000111249	ENSGT00940000155868.f	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.yb #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166277	ENSGT00940000156462.B.d	ENSGT00940000156462.B.c.a.b.b	ENSGT00940000156462.B.c.a.a	ENSGT00940000156462.A	ENSGT00950000183138.a.b.r.b	ENSGT00940000161839	ENSGT00530000063564.b.b.b	ENSGT00940000158493	ENSGT00390000004145.b	ENSGT00390000016484	ENSGT00940000155466.e.b	ENSGT00940000154014.b.b
Anabantoidei	ANCESTRAL SPECIES	13			ENSGT00730000111249	ENSGT00940000155868.f	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.yb #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166277	ENSGT00940000156462.B.c.a.b.b	ENSGT00940000156462.B.c.a.a	ENSGT00950000183138.a.b.r.b	ENSGT00940000161839	ENSGT00530000063564.b.b.b	ENSGT00940000158493	ENSGT00390000004145.b	ENSGT00390000016484	ENSGT00940000155466.e.b	ENSGT00940000154014.b.b	ENSGT00390000005550	ENSGT00390000005581.b
Climbing perch	MODERN SPECIES	12	arglu1a (ENSATEG00000005743)	efnb2a (ENSATEG00000030016)	gtpbp8 (ENSATEG00000005805)	slc10a2 (ENSATEG00000025740)	ENSATEG00000026038	ENSATEG00000027382	ENSATEG00000027795	gli2a (ENSATEG00000005931)	ENSATEG00000005997	ENSATEG00000025776	clasp1a (ENSATEG00000006024)	ENSATEG00000006206	ENSATEG00000006246	ENSATEG00000006313	ENSATEG00000006330 #24	ENSATEG00000006529 #22	ENSATEG00000006583 ##23	ENSATEG00000006715 ##23	cops8 (ENSATEG00000007220)	COL6A3 (ENSATEG00000007260)	ENSATEG00000007494	ENSATEG00000028208	ENSATEG00000026276	MLPH (ENSATEG00000007856)	RAB17 (ENSATEG00000007921)	ENSATEG00000007942	tyw5 (ENSATEG00000007983)	maip1 (ENSATEG00000008023)	ENSATEG00000008039	ENSATEG00000008178	stk17b (ENSATEG00000028247)
Zig-zag eel	MODERN SPECIES	13	ENSMAMG00000026151	arglu1a (ENSMAMG00000024802)	efnb2a (ENSMAMG00000026875)	ENSMAMG00000026788	ENSMAMG00000008656	gtpbp8 (ENSMAMG00000008709)	slc10a2 (ENSMAMG00000028476)	ENSMAMG00000008731	ENSMAMG00000008751	ENSMAMG00000008771	clasp1a (ENSMAMG00000008838)	ENSMAMG00000008963	ENSMAMG00000008986	ENSMAMG00000009052	ENSMAMG00000009100 #24	ENSMAMG00000009139 #22	ENSMAMG00000009192 ##23	ENSMAMG00000009353 ##23	ENSMAMG00000027486	ENSMAMG00000024269	cops8 (ENSMAMG00000009503)	COL6A3 (ENSMAMG00000009541)	ENSMAMG00000009662	ENSMAMG00000009845	ENSMAMG00000025350	ENSMAMG00000009869	MLPH (ENSMAMG00000009892)	RAB17 (ENSMAMG00000009937)	ENSMAMG00000009965	tyw5 (ENSMAMG00000010116)	maip1 (ENSMAMG00000010129)
Eupercaria	ANCESTRAL SPECIES	25	ENSGT00940000177543	ENSGT00730000111249	ENSGT00940000155868.f	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.yb #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166042.b	ENSGT00940000166277	ENSGT00940000171532	ENSGT00940000156462.B.c.a.b.b	ENSGT00940000156462.B.c.b	ENSGT00940000156462.A	ENSGT00950000183138.a.b.r.b	ENSGT00940000177438	ENSGT00940000161839	ENSGT00530000063564.b.b.b	ENSGT00940000158493	ENSGT00390000004145.b	ENSGT00390000016484
Eupecaria_A	ANCESTRAL SPECIES	24	ENSGT00940000177543	ENSGT00730000111249	ENSGT00940000155868.f	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.yb #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166042.b	ENSGT00940000166277	ENSGT00940000171532	ENSGT00940000156462.B.c.a.b.b	ENSGT00940000156462.B.c.b	ENSGT00940000156462.A	ENSGT00950000183138.a.b.r.b	ENSGT00940000177438	ENSGT00940000161839	ENSGT00530000063564.b.b.b	ENSGT00940000158493	ENSGT00390000004145.b	ENSGT00390000016484
Eupecaria_B	ANCESTRAL SPECIES	24	ENSGT00510000048978	ENSGT00730000111249	ENSGT00940000155868.f	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.yb #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166042.b	ENSGT00940000166277	ENSGT00940000156462.B.c.a.b.b	ENSGT00940000156462.B.c.b	ENSGT00940000156462.A	ENSGT00950000183138.a.b.r.b	ENSGT00940000177438	ENSGT00940000161839	ENSGT00530000063564.b.b.b	ENSGT00940000158493	ENSGT00390000004145.b	ENSGT00390000016484	ENSGT00940000155466.e.b
Eupecaria_C	ANCESTRAL SPECIES	24	ENSGT00390000016499	ENSGT00940000177543	ENSGT00730000111249	ENSGT00940000155868.f	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00390000013973.A.a.c.a	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.yb #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166042.b	ENSGT00940000166277	ENSGT00940000156462.B.c.a.b.b	ENSGT00940000156462.B.c.b	ENSGT00940000156462.A	ENSGT00950000183138.a.b.r.b	ENSGT00940000177438	ENSGT00940000161839	ENSGT00530000063564.b.b.b	ENSGT00940000158493	ENSGT00390000004145.b	ENSGT00390000016484	ENSGT00940000155466.e.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	66														ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.yb #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166042.b	ENSGT00940000166277	ENSGT00940000156462.B.c.a.b.b	ENSGT00940000156462.B.c.b	ENSGT00940000156462.A	ENSGT00950000183138.a.b.r.b	ENSGT00940000177438	ENSGT00940000161839	ENSGT00530000063564.b.b.b	ENSGT00940000158493	ENSGT00390000004145.b	ENSGT00390000016484	ENSGT00940000155466.e.b
Large yellow croaker	MODERN SPECIES	490	tmem177 (ENSLCRG00005009093) #36	ENSLCRG00005009091	MRAS (ENSLCRG00005009090)	pth2ra (ENSLCRG00005009081)	ENSLCRG00005009076	tmem163a (ENSLCRG00005009073)	acmsd (ENSLCRG00005009053)	ENSLCRG00005009050	ccnt2a (ENSLCRG00005008833)	ENSLCRG00005008825	ramp1 (ENSLCRG00005008824)	ENSLCRG00005008823	ube2f (ENSLCRG00005008819)	zgc:172295 (ENSLCRG00005007062)	ddx18 (ENSLCRG00005006880) #24	actr3 (ENSLCRG00005006791) #22	ENSLCRG00005005583 ##23	ENSLCRG00005005547 ##23	trim63b (ENSLCRG00005005543)	cops8 (ENSLCRG00005005540)	ENSLCRG00005005532	dnajc15 (ENSLCRG00005005527)	sestd1 (ENSLCRG00005005515)	ENSLCRG00005005510	ENSLCRG00005005505	cwc22 (ENSLCRG00005005299)	ENSLCRG00005005294	ENSLCRG00005005290	TRIM45 (ENSLCRG00005005288)	man1a2 (ENSLCRG00005004499)	tent5c (ENSLCRG00005004483)
European seabass	DUPLICATION
European seabass	MODERN SPECIES	5	pms1 (ENSDLAG00005022460)	ormdl1 (ENSDLAG00005027751)	ENSDLAG00005022445	adat3 (ENSDLAG00005022449)	osgepl1 (ENSDLAG00005022441)	ENSDLAG00005022435	ENSDLAG00005021562	ENSDLAG00005021526	ENSDLAG00005021493	wdr75 (ENSDLAG00005021240)	slc40a1 (ENSDLAG00005021220)	asnsd1 (ENSDLAG00005021210)	ENSDLAG00005020767	ENSDLAG00005018390	ENSDLAG00005017706 #24	ENSDLAG00005016887 #22	ENSDLAG00005016414 ##23	ENSDLAG00005016349 ##23	trim63b (ENSDLAG00005031720)	ENSDLAG00005030648	ENSDLAG00005031197	ENSDLAG00005030172	ENSDLAG00005032093	ENSDLAG00005028863	ENSDLAG00005032032	ENSDLAG00005016271	COL6A3 (ENSDLAG00005016109)	MLPH (ENSDLAG00005016070)	ENSDLAG00005016059	RAB17 (ENSDLAG00005016045)	ENSDLAG00005015741
European seabass	MODERN SPECIES	15	ENSDLAG00005031054	KLF7 (ENSDLAG00005034369)	si:ch211-93g23.2 (ENSDLAG00005026289)	ENSDLAG00005026609	erbb4a (ENSDLAG00005026285)	lancl1 (ENSDLAG00005028062)	mylz3 (ENSDLAG00005026275)	ACADL (ENSDLAG00005026259)	ENSDLAG00005026247	ENSDLAG00005026239	ENSDLAG00005026236	ENSDLAG00005026230	ENSDLAG00005026223	ENSDLAG00005027126	ENSDLAG00005026218	ENSDLAG00005026217 #22	ENSDLAG00005026212	ENSDLAG00005026210	ENSDLAG00005028117	ENSDLAG00005031664	ENSDLAG00005033457	ENSDLAG00005026194	ENSDLAG00005026180	ENSDLAG00005032136	ENSDLAG00005026175	ENSDLAG00005026165	ENSDLAG00005026359	ENSDLAG00005026064	ENSDLAG00005028144	ENSDLAG00005026006	ENSDLAG00005026002
Perciformes	ANCESTRAL SPECIES	23	ENSGT00940000177543	ENSGT00730000111249	ENSGT00940000155868.f	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.yb #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166042.b	ENSGT00940000166277	ENSGT00940000156462.B.c.a.b.b	ENSGT00950000183138.a.b.r.b	ENSGT00940000177438	ENSGT00940000161839	ENSGT00530000063564.b.b.b	ENSGT00940000158493	ENSGT00390000004145.b	ENSGT00390000016484	ENSGT00940000155466.e.b	ENSGT00940000154014.b.b	ENSGT00390000005550
Cottioidei	ANCESTRAL SPECIES	30	ENSGT00390000016499	ENSGT00730000111249	ENSGT00940000155868.f	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.yb #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166277	ENSGT00940000166042.b	ENSGT00940000156462.B.c.a.b.b	ENSGT00950000183138.a.b.r.b	ENSGT00940000161839	ENSGT00530000063564.b.b.b	ENSGT00940000158493	ENSGT00390000004145.b	ENSGT00390000016484	ENSGT00940000155466.e.b	ENSGT00940000154014.b.b	ENSGT00390000005550	ENSGT00390000008856
Lumpfish	MODERN SPECIES	13	UBXN4 (ENSCLMG00005004115)	ENSCLMG00005004111	ENSCLMG00005004108	ENSCLMG00005004105	ENSCLMG00005004099	slc37a1 (ENSCLMG00005003073)	inhbb (ENSCLMG00005002997)	gli2a (ENSCLMG00005002836)	ENSCLMG00005002790	tfcp2l1 (ENSCLMG00005020823)	clasp1a (ENSCLMG00005020222)	nifk (ENSCLMG00005020182)	ENSCLMG00005020177	ENSCLMG00005020174	ddx18 (ENSCLMG00005019789) #24	ENSCLMG00005019376 #22	ENSCLMG00005019367	ENSCLMG00005019365 ##23	ENSCLMG00005019361 ##23	cops8 (ENSCLMG00005019356)	ENSCLMG00005019353	MLPH (ENSCLMG00005019350)	RAB17 (ENSCLMG00005019346)	LRRFIP1 (ENSCLMG00005019327)	ENSCLMG00005019325	ENSCLMG00005019324	ENSCLMG00005019323	tyw5 (ENSCLMG00005019322)	maip1 (ENSCLMG00005019320)	PGAP1 (ENSCLMG00005019288)	HECW2 (ENSCLMG00005019227)
Perciformes_a	ANCESTRAL SPECIES	23	ENSGT00940000177543	ENSGT00730000111249	ENSGT00940000155868.f	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.yb #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166042.b	ENSGT00940000166277	ENSGT00940000156462.B.c.a.b.b	ENSGT00950000183138.a.b.r.b	ENSGT00940000177438	ENSGT00940000161839	ENSGT00530000063564.b.b.b	ENSGT00940000158493	ENSGT00390000004145.b	ENSGT00390000016484	ENSGT00940000155466.e.b	ENSGT00940000154014.b.b	ENSGT00390000005550
Pike perch	MODERN SPECIES	5	gtpbp8 (ENSSLUG00000023571)	slc10a2 (ENSSLUG00000023563)	ENSSLUG00000023559	inhbb (ENSSLUG00000023551)	ENSSLUG00000023543	ENSSLUG00000023539	ENSSLUG00000023535	gli2a (ENSSLUG00000023465)	ENSSLUG00000023453	tfcp2l1 (ENSSLUG00000023274)	clasp1a (ENSSLUG00000022081)	nifk (ENSSLUG00000021955)	ENSSLUG00000021950	zgc:172295 (ENSSLUG00000021849)	ddx18 (ENSSLUG00000021692) #24	actr3 (ENSSLUG00000021107) #22	ENSSLUG00000021079	ENSSLUG00000021076	nkl.2 (ENSSLUG00000021075)	tonsl (ENSSLUG00000021072)	GABRR1 (ENSSLUG00000021068)	PM20D2 (ENSSLUG00000021063)	CNR1 (ENSSLUG00000021060)	akirin2 (ENSSLUG00000021052)	orc3 (ENSSLUG00000020927)	ENSSLUG00000020902	ENSSLUG00000020900	ENSSLUG00000020894	cga (ENSSLUG00000020889)	syncripl (ENSSLUG00000020262)	SNX14 (ENSSLUG00000018965)
Channel bull blenny	DUPLICATION
Channel bull blenny	MODERN SPECIES	13	arglu1a (ENSCGOG00000013590)	efnb2a (ENSCGOG00000013595)	ENSCGOG00000013598	gtpbp8 (ENSCGOG00000013603)	slc10a2 (ENSCGOG00000013610)	ENSCGOG00000013611	inhbb (ENSCGOG00000013612)	gli2a (ENSCGOG00000013614)	ENSCGOG00000013617	tfcp2l1 (ENSCGOG00000013618)	clasp1a (ENSCGOG00000013701)	nifk (ENSCGOG00000017549)	ENSCGOG00000017556	zgc:172295 (ENSCGOG00000017609)	ddx18 (ENSCGOG00000018807) #24	ENSCGOG00000018836 #22	ENSCGOG00000019534 ##23	ENSCGOG00000019556 ##23	cops8 (ENSCGOG00000019563)	trim63b (ENSCGOG00000019611)	COL6A3 (ENSCGOG00000019614)	ENSCGOG00000019620	ENSCGOG00000019625	ENSCGOG00000019629	ENSCGOG00000019631	ENSCGOG00000019635	RAB17 (ENSCGOG00000019637)	ENSCGOG00000019641	tyw5 (ENSCGOG00000019746)	maip1 (ENSCGOG00000019751)	PGAP1 (ENSCGOG00000019753)
Channel bull blenny	MODERN SPECIES	11	ENSCGOG00000007678	chn1 (ENSCGOG00000007702)	FARP1 (ENSCGOG00000008418)	ggact.3 (ENSCGOG00000010730)	arl13b (ENSCGOG00000010733)	NCAM2 (ENSCGOG00000010755)	ENSCGOG00000011560	ENSCGOG00000011561	gart (ENSCGOG00000011590)	n6amt1 (ENSCGOG00000012715)	ENSCGOG00000012716	OSBPL11 (ENSCGOG00000012722)	gpd1c (ENSCGOG00000012810)	NCKAP5 (ENSCGOG00000013216)	LYPD1 (ENSCGOG00000013222)	actr3 (ENSCGOG00000013242) #22	ENSCGOG00000013928	pou3f3b (ENSCGOG00000013930)	mrps9 (ENSCGOG00000013936)	ENSCGOG00000014061	n6amt1 (ENSCGOG00000014068)	FAM171B (ENSCGOG00000014069)	zswim2 (ENSCGOG00000014072)	ENSCGOG00000014080	ENSCGOG00000014139	ENSCGOG00000014216	pwp2h (ENSCGOG00000014224)	eed (ENSCGOG00000014468)	ATP7B (ENSCGOG00000014706)	LRRC3 (ENSCGOG00000016789)	PCBP3 (ENSCGOG00000016792)
Tetraodontidae	ANCESTRAL SPECIES		ENSGT00510000051617	ENSGT00940000158406	ENSGT00940000157314.B	ENSGT00510000048978	ENSGT00940000155868.f	ENSGT00390000001083	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000165735.b	ENSGT00940000159862.a	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037 #24	ENSGT00940000155065.yb #22	ENSGT00940000155065.xb.a #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00940000166042.b	ENSGT00940000166277	ENSGT00940000156462.B.c.a.b.b	ENSGT00950000183138.a.b.r.b	ENSGT00940000161839	ENSGT00530000063564.b.b.b	ENSGT00940000158493	ENSGT00390000004145.b	ENSGT00390000016484	ENSGT00940000155466.e.b	ENSGT00940000154014.b.b	ENSGT00390000005550
Fugu	DUPLICATION
Fugu	MODERN SPECIES	20	pwp2h (ENSTRUG00000013258)	ENSTRUG00000013604	ENSTRUG00000029949	ENSTRUG00000027802	gpd2 (ENSTRUG00000002012)	ENSTRUG00000033060	ENSTRUG00000030198	inpp4ab (ENSTRUG00000011479)	zgc:113142 (ENSTRUG00000011355)	fzd7a (ENSTRUG00000027540)	cdk15 (ENSTRUG00000011133)	ENSTRUG00000011124	dph3 (ENSTRUG00000011120)	gpd1c (ENSTRUG00000010970)	LYPD1 (ENSTRUG00000010883)	actr3 (ENSTRUG00000010618) #22	ENSTRUG00000033327	ENSTRUG00000029842	ENSTRUG00000028067	ENSTRUG00000028398	pou3f3b (ENSTRUG00000030854)	ENSTRUG00000026898	ENSTRUG00000010321	ALS2 (ENSTRUG00000009974)	MPP4 (ENSTRUG00000009863)	tmem237b (ENSTRUG00000009812)	cyp20a1 (ENSTRUG00000009561)	abi2b (ENSTRUG00000009423)	ENSTRUG00000029019	ENSTRUG00000008468	ENSTRUG00000019616
Fugu	MODERN SPECIES		ENSTRUG00000030055	ENSTRUG00000032922	ENSTRUG00000001494	ENSTRUG00000032182	slc10a2 (ENSTRUG00000001580)	ENSTRUG00000025216	inhbb (ENSTRUG00000020085)	ENSTRUG00000033480	ENSTRUG00000001954	tfcp2l1 (ENSTRUG00000002438)	clasp1a (ENSTRUG00000003681)	nifk (ENSTRUG00000005206)	ENSTRUG00000005320	zgc:172295 (ENSTRUG00000005395)	ddx18 (ENSTRUG00000005649) #24	actr3 (ENSTRUG00000005816) #22	ENSTRUG00000006248 ##23	ENSTRUG00000021752	ENSTRUG00000027591 ##23	trim63b (ENSTRUG00000007735)	ENSTRUG00000026530 ##23	cops8 (ENSTRUG00000007598)	ENSTRUG00000007787	MLPH (ENSTRUG00000008356)	RAB17 (ENSTRUG00000008464)	ENSTRUG00000023791	tyw5 (ENSTRUG00000008883)	maip1 (ENSTRUG00000020162)	PGAP1 (ENSTRUG00000008912)	HECW2 (ENSTRUG00000009174)	stk17b (ENSTRUG00000025803)
Protacanthopterygii	DUPLICATION
Protacanthopterygii	DUPLICATION
Protacanthopterygii	ANCESTRAL SPECIES	64	ENSGT00530000063564.b.b.b.b	ENSGT00940000158493	ENSGT00390000004145.b	ENSGT00390000016484	ENSGT00940000155466.e.b	ENSGT00940000154014.b.b	ENSGT00390000005550	ENSGT00390000005581.b	ENSGT00530000063607.b.j.a	ENSGT01030000234565.a.b	ENSGT00390000002215.i.a	ENSGT00970000197574	ENSGT00910000148192	ENSGT01100000263518.A.a.b	ENSGT00390000005949 #21	ENSGT00940000155065.`c.a #22	ENSGT00940000154657.A.c ##23	ENSGT00940000154657.B ##23	ENSGT00680000100037 #24	ENSGT01090000260005.a.a.a.b.a.b.a	ENSGT00940000155324.h	ENSGT00940000157440.m.a	ENSGT00940000166532	ENSGT00940000165503	ENSGT00940000153969.b	ENSGT00720000108822	ENSGT00530000063273.b.a.a	ENSGT00940000155992.c.a	ENSGT01090000259987.a.a.a.p	ENSGT00940000160544.f.a	ENSGT00940000167133
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	757							ENSGT00940000155466.e.b.q	ENSGT00940000154014.b.b.g	ENSGT00390000005550	ENSGT00390000005581.b	ENSGT00530000063607.b.j.a.a	ENSGT00390000002215.i.a.e	ENSGT00910000148192	ENSGT01100000263518.A.a.b.sb	ENSGT00390000005949.m #21	ENSGT00940000155065.`c.a.a #22
Huchen	MODERN SPECIES	1093									stk17b (ENSHHUG00000030498)	zgc:153521 (ENSHHUG00000030496)	ftcdnl1 (ENSHHUG00000030489)	ENSHHUG00000030478	LYPD1 (ENSHHUG00000030474)	gpr39 (ENSHHUG00000030418)	SLC35F5 (ENSHHUG00000030411) #21	ENSHHUG00000030300 #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000155065.`c.a.a #22
Salmo	ANCESTRAL SPECIES																	ENSGT00940000155065.`c.a.a #22
River trout	MODERN SPECIES	12	ENSSTUG00000028828	nabp1a (ENSSTUG00000028796)	cavin2a (ENSSTUG00000028780)	tmeff2a (ENSSTUG00000028628)	ENSSTUG00000028611	ENSSTUG00000028607	slc39a10 (ENSSTUG00000028564)	esyt3 (ENSSTUG00000028462)	HECW2 (ENSSTUG00000025544)	stk17b (ENSSTUG00000025450)	zgc:153521 (ENSSTUG00000025444)	ftcdnl1 (ENSSTUG00000025439)	LYPD1 (ENSSTUG00000025431)	gpr39 (ENSSTUG00000025423)	SLC35F5 (ENSSTUG00000023994) #21	ACTR3 (ENSSTUG00000023017) #22	ENSSTUG00000022576 ##23	ENSSTUG00000022542 ##23	zgc:172323 (ENSSTUG00000022492)	ddx18 (ENSSTUG00000022084) #24	gjc4b (ENSSTUG00000022067)	hdac4 (ENSSTUG00000021569)	twist2 (ENSSTUG00000021540)	ENSSTUG00000021538	asb1 (ENSSTUG00000021531)	traf3ip1 (ENSSTUG00000021506)	agr1 (ENSSTUG00000021502)	ADARB1 (ENSSTUG00000021460)	ENSSTUG00000021455	ITGB2 (ENSSTUG00000018110)	vil1 (ENSSTUG00000016422)
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00940000155065.`c.a.a #22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00940000155065.`c.a.a #22
Chinook salmon	MODERN SPECIES	18	ENSOTSG00005019569	nabp1a (ENSOTSG00005019573)	cavin2a (ENSOTSG00005019576)	tmeff2a (ENSOTSG00005019578)	slc39a10 (ENSOTSG00005019579)	esyt3 (ENSOTSG00005019583)	HECW2 (ENSOTSG00005019607)	stk17b (ENSOTSG00005019967)	ftcdnl1 (ENSOTSG00005019968)	zgc:153521 (ENSOTSG00005019972)	ENSOTSG00005019975	ENSOTSG00005019976	LYPD1 (ENSOTSG00005019977)	gpr39 (ENSOTSG00005019978)	SLC35F5 (ENSOTSG00005019979) #21	actr3 (ENSOTSG00005019980) #22	ENSOTSG00005020009 ##23	ENSOTSG00005023216	ddx18 (ENSOTSG00005023217) #24	gjc4b (ENSOTSG00005023219)	hdac4 (ENSOTSG00005023226)	twist2 (ENSOTSG00005024899)	ENSOTSG00005024900	asb1 (ENSOTSG00005024901)	traf3ip1 (ENSOTSG00005024903)	agr1 (ENSOTSG00005024905)	ADARB1 (ENSOTSG00005024907)	ITGB2 (ENSOTSG00005024955)	vil1 (ENSOTSG00005033430)	zgc:66484 (ENSOTSG00005033517)	CYP27A1 (ENSOTSG00005033518)
Salmoninae	ANCESTRAL SPECIES	548														ENSGT01100000263518.A.a.b.rb	ENSGT00390000005949.n #21	ENSGT00940000155065.`c.a.b #22	ENSGT00940000154657.A.c.j ##23	ENSGT00940000164536.a.b.f	ENSGT00940000154657.A.c.i ##23	ENSGT00940000154657.B ##23	ENSGT00680000100037.jb #24	ENSGT01090000260005.a.a.a.b.a.b.a	ENSGT00940000155324.h	ENSGT00940000157440.m.a.d	ENSGT00940000166532.h	ENSGT00940000165503.i	ENSGT00720000108822.d	ENSGT00530000063273.b.a.a.h	ENSGT00940000155992.c.a.d	ENSGT01090000259987.a.a.a.p.a	ENSGT00940000160544.f.b
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES		ENSGT01050000244848.A.b.a	ENSGT00940000155812	ENSGT00950000182910.a.a.c.a	ENSGT00940000156056.A.i.b	ENSGT00940000160335	ENSGT00940000165191	ENSGT00940000155466.e.b.q	ENSGT00940000154014.b.b.g	ENSGT00390000005550	ENSGT00390000005581.b	ENSGT00530000063607.b.j.a.a	ENSGT00390000002215.i.a.e	ENSGT00910000148192	ENSGT01100000263518.A.a.b.sb	ENSGT00390000005949.m #21	ENSGT00940000155065.`c.a.b.a #22	ENSGT00940000154657.A.c.j ##23	ENSGT00940000164536.a.b.f	ENSGT00680000100037.kb #24	ENSGT00940000157440.m.a.c	ENSGT00940000166532.g	ENSGT00940000165503.j	ENSGT00940000153969.b	ENSGT00720000108822.c	ENSGT00530000063273.b.a.a.g	ENSGT00940000155992.c.a.c	ENSGT01090000259987.a.a.a.p.b	ENSGT00940000160544.f.a	ENSGT00940000167133	ENSGT00950000182905.a.a.a.a.b.j	ENSGT00390000005415
Salmo	ANCESTRAL SPECIES	10	ENSGT00940000163418.A.b.f	ENSGT01050000244848.A.b.a	ENSGT00940000155812.t	ENSGT00950000182910.a.a.c.a	ENSGT00940000156056.A.i.b	ENSGT00940000160335	ENSGT00940000165191	ENSGT00940000155466.e.b.q	ENSGT00940000154014.b.b.g	ENSGT00390000005550	ENSGT00390000005581.b	ENSGT00530000063607.b.j.a.a	ENSGT00390000002215.i.a.e	ENSGT01100000263518.A.a.b.sb	ENSGT00390000005949.m #21	ENSGT00940000155065.`c.a.b.a #22	ENSGT00940000154657.A.c.j ##23	ENSGT00940000154657.B.c ##23	ENSGT00940000164536.a.b.f	ENSGT00680000100037.kb #24	ENSGT00940000157440.m.a.c	ENSGT00940000166532.g	ENSGT00940000165503.j	ENSGT00940000153969.b	ENSGT00720000108822.c	ENSGT00530000063273.b.a.a.g	ENSGT00940000155992.c.a.c	ENSGT01090000259987.a.a.a.p.b	ENSGT00940000160544.f.a	ENSGT00950000182905.a.a.a.a.b.j	ENSGT00390000005415
Atlantic salmon	MODERN SPECIES	13	nabp1a (ENSSSAG00000106278)	ENSSSAG00000118677	cavin2a (ENSSSAG00000053765)	tmeff2a (ENSSSAG00000053774)	ENSSSAG00000086058	slc39a10 (ENSSSAG00000053804)	ENSSSAG00000054062	ENSSSAG00000054185	stk17b (ENSSSAG00000086172)	zgc:153521 (ENSSSAG00000109891)	ftcdnl1 (ENSSSAG00000088851)	ENSSSAG00000054612	ENSSSAG00000085895	ENSSSAG00000054634	SLC35F5 (ENSSSAG00000054722) #21	ENSSSAG00000057356 #22	ENSSSAG00000058374 ##23	ENSSSAG00000059337	DDX18 (ENSSSAG00000059371) #24	gjc4b (ENSSSAG00000059516)	ENSSSAG00000092726	hdac4 (ENSSSAG00000006508)	TWST2 (ENSSSAG00000015666)	asb1 (ENSSSAG00000015679)	traf3ip1 (ENSSSAG00000118564)	agr1 (ENSSSAG00000015737)	ENSSSAG00000015780	ENSSSAG00000086387	ENSSSAG00000022772	vil1 (ENSSSAG00000033358)	ENSSSAG00000041425
Oncorhynchus	ANCESTRAL SPECIES	13	ENSGT01050000244848.A.b.a	ENSGT00940000155812.v	ENSGT00950000182910.a.a.c.a	ENSGT00940000156056.A.i.b	ENSGT00940000160335	ENSGT00940000165191	ENSGT00940000155466.e.b.q	ENSGT00940000154014.b.b.g	ENSGT00390000005550	ENSGT00390000005581.b	ENSGT00530000063607.b.j.a.a	ENSGT00390000002215.i.a.e	ENSGT00910000148192	ENSGT01100000263518.A.a.b.sb	ENSGT00390000005949.m #21	ENSGT00940000155065.`c.a.b.a #22	ENSGT00940000154657.A.c.j ##23	ENSGT00940000164536.a.b.f	ENSGT00680000100037.kb #24	ENSGT00940000157440.m.a.c	ENSGT00940000166532.g	ENSGT00940000165503.j	ENSGT00940000153969.b	ENSGT00720000108822.c	ENSGT00530000063273.b.a.a.g	ENSGT00940000155992.c.a.c	ENSGT01090000259987.a.a.a.p.b	ENSGT00940000160544.f.a	ENSGT00940000167133.e	ENSGT00950000182905.a.a.a.a.b.j	ENSGT00390000005415
Rainbow trout	MODERN SPECIES	14	ENSOMYG00000063335	ENSOMYG00000058198	il1rapl1a (ENSOMYG00000024257)	ENSOMYG00000024248	ENSOMYG00000024245	ENSOMYG00000024204	ENSOMYG00000022389	stk17b (ENSOMYG00000021830)	zgc:153521 (ENSOMYG00000021824)	ftcdnl1 (ENSOMYG00000021818)	ENSOMYG00000021789	ENSOMYG00000054315	ENSOMYG00000059185	GPR39 (ENSOMYG00000021749)	SLC35F5 (ENSOMYG00000021198) #21	ENSOMYG00000020956 #22	ENSOMYG00000056105	ENSOMYG00000017748 ##23	ENSOMYG00000017383	DDX18 (ENSOMYG00000016742) #24	gjc4b (ENSOMYG00000016703)	ENSOMYG00000058183	hdac4 (ENSOMYG00000016587)	twist2 (ENSOMYG00000016557)	ENSOMYG00000076629	asb1 (ENSOMYG00000016548)	ENSOMYG00000065849	traf3ip1 (ENSOMYG00000016497)	agr1 (ENSOMYG00000016488)	ENSOMYG00000016259	ENSOMYG00000016214
Oncorhynchus_a	ANCESTRAL SPECIES	11	ENSGT00940000163418.A.a.b	ENSGT01050000244848.A.b.a	ENSGT00940000155812.v	ENSGT00950000182910.a.a.c.a	ENSGT00940000156056.A.i.b	ENSGT00940000160335	ENSGT00940000165191	ENSGT00940000155466.e.b.q	ENSGT00940000154014.b.b.g	ENSGT00390000005550	ENSGT00390000005581.b	ENSGT00530000063607.b.j.a.a	ENSGT00390000002215.i.a.e	ENSGT01100000263518.A.a.b.sb	ENSGT00390000005949.m #21	ENSGT00940000155065.`c.a.b.a #22	ENSGT00940000154657.A.c.j ##23	ENSGT00940000164536.a.b.f	ENSGT00680000100037.kb #24	ENSGT00940000157440.m.a.c	ENSGT00940000166532.g	ENSGT00940000165503.j	ENSGT00940000153969.b	ENSGT00720000108822.c	ENSGT00530000063273.b.a.a.g	ENSGT00940000155992.c.a.c	ENSGT01090000259987.a.a.a.p.b	ENSGT00940000160544.f.a	ENSGT00940000167133.e	ENSGT00950000182905.a.a.a.a.b.j	ENSGT00390000005415
Chinook salmon	MODERN SPECIES	22	col18a1a (ENSOTSG00005019501)	cops8 (ENSOTSG00005019508)	COL6A3 (ENSOTSG00005019517)	ENSOTSG00005019519	ENSOTSG00005019520	ENSOTSG00005019521	maip1 (ENSOTSG00005019523)	PGAP1 (ENSOTSG00005019524)	HECW2 (ENSOTSG00005019525)	stk17b (ENSOTSG00005000317)	ENSOTSG00005000330	LYPD1 (ENSOTSG00005000333)	ENSOTSG00005000334	gpr39 (ENSOTSG00005000336)	SLC35F5 (ENSOTSG00005000340) #21	actr3 (ENSOTSG00005000356) #22	ENSOTSG00005000408 ##23	ENSOTSG00005000639 ##23	ddx18 (ENSOTSG00005000672) #24	gjc4b (ENSOTSG00005000691)	LCT (ENSOTSG00005000697)	hdac4 (ENSOTSG00005000763)	twist2 (ENSOTSG00005008005)	ENSOTSG00005008007	ENSOTSG00005008008	traf3ip1 (ENSOTSG00005008011)	agr1 (ENSOTSG00005008013)	ADARB1 (ENSOTSG00005008022)	ITGB2 (ENSOTSG00005008041)	vil1 (ENSOTSG00005009220)	CYP27A1 (ENSOTSG00005009360)
Coho salmon	MODERN SPECIES	18	ENSOKIG00005009825	slc39a10 (ENSOKIG00005009834)	esyt3 (ENSOKIG00005009879)	HECW2 (ENSOKIG00005010053)	stk17b (ENSOKIG00005011860)	ftcdnl1 (ENSOKIG00005011871)	zgc:153521 (ENSOKIG00005011882)	ENSOKIG00005011892	LYPD1 (ENSOKIG00005011902)	GPR39 (ENSOKIG00005011909)	ENSOKIG00005011927	ENSOKIG00005011938	ENSOKIG00005011944	ENSOKIG00005011956	SLC35F5 (ENSOKIG00005011981) #21	ENSOKIG00005012109 #22	ENSOKIG00005012862 ##23	ENSOKIG00005013230	DDX18 (ENSOKIG00005013296) #24	gjc4b (ENSOKIG00005014580)	hdac4 (ENSOKIG00005014642)	twist2 (ENSOKIG00005015419)	ENSOKIG00005015426	asb1 (ENSOKIG00005015436)	traf3ip1 (ENSOKIG00005015449)	agr1 (ENSOKIG00005015486)	ADARB1 (ENSOKIG00005015504)	ITGB2 (ENSOKIG00005015663)	vil1 (ENSOKIG00005016604)	zgc:66484 (ENSOKIG00005016818)	CYP27A1 (ENSOKIG00005016838)
Salmoninae_a	ANCESTRAL SPECIES		ENSGT00940000171532	ENSGT00940000156462.B.c.a.b.a.b.b	ENSGT00940000156462.B.c.a.b.a.a.a	ENSGT00940000156462.B.d.d.a	ENSGT00530000063564.b.b.b.b	ENSGT00940000158493.n	ENSGT00390000004145.b.e	ENSGT00390000016484	ENSGT00940000155466.e.b.r	ENSGT00940000154014.b.b.h	ENSGT00530000063607.b.j.a.b	ENSGT01030000234565.a.b.b.b.b	ENSGT00390000002215.i.a.f	ENSGT01100000263518.A.a.b.rb	ENSGT00390000005949.n #21	ENSGT00940000155065.`c.a.b.b #22	ENSGT00940000154657.A.c.i ##23	ENSGT00940000154657.B ##23	ENSGT00680000100037.jb #24	ENSGT01090000260005.a.a.a.b.a.b.a	ENSGT00940000155324.h	ENSGT00940000157440.m.a.d	ENSGT00940000166532.h	ENSGT00940000165503.i	ENSGT00720000108822.d	ENSGT00530000063273.b.a.a.h	ENSGT00940000155992.c.a.d	ENSGT01090000259987.a.a.a.p.a	ENSGT00940000160544.f.b	ENSGT00950000182905.a.a.a.a.b.i	ENSGT00940000156180.f.g
Oncorhynchus	ANCESTRAL SPECIES	3	ENSGT01040000240451.a.a.c.g	ENSGT00940000158212.B.n	ENSGT00940000166277.a	ENSGT00940000156462.B.c.a.b.a.a.a	ENSGT00940000156462.B.d.d.a	ENSGT00530000063564.b.b.b.b	ENSGT00390000004145.b.e	ENSGT00390000016484	ENSGT00940000155466.e.b.r	ENSGT00940000154014.b.b.h	ENSGT00530000063607.b.j.a.b	ENSGT01030000234565.a.b.b.b.b.f.b.b.b.a.a.a.a.a.a.b.a	ENSGT00390000002215.i.a.f	ENSGT01100000263518.A.a.b.rb	ENSGT00390000005949.n #21	ENSGT00940000155065.`c.a.b.b #22	ENSGT00940000154657.A.c.i ##23	ENSGT00940000154657.B ##23	ENSGT00680000100037.jb #24	ENSGT01090000260005.a.a.a.b.a.b.a	ENSGT00940000155324.h	ENSGT00940000157440.m.a.d	ENSGT00940000166532.h	ENSGT00940000165503.i	ENSGT00720000108822.d	ENSGT00530000063273.b.a.a.h	ENSGT00940000155992.c.a.d	ENSGT01090000259987.a.a.a.p.a	ENSGT00940000160544.f.b	ENSGT00950000182905.a.a.a.a.b.i	ENSGT00940000156180.f.g
Oncorhynchus_a	ANCESTRAL SPECIES	8	ENSGT01040000240451.a.a.c.g	ENSGT00940000158212.B.n	ENSGT00940000166277.a	ENSGT00940000156462.B.c.a.b.a.b.b	ENSGT00940000156462.B.d.d.a	ENSGT00530000063564.b.b.b.b	ENSGT00390000004145.b.e	ENSGT00390000016484	ENSGT00940000155466.e.b.r	ENSGT00940000154014.b.b.h	ENSGT00530000063607.b.j.a.b	ENSGT00390000002215.i.a.f	ENSGT00910000148192	ENSGT01100000263518.A.a.b.rb	ENSGT00390000005949.n #21	ENSGT00940000155065.`c.a.b.b #22	ENSGT00940000154657.A.c.i ##23	ENSGT00940000154657.B ##23	ENSGT00680000100037.jb #24	ENSGT01090000260005.a.a.a.b.a.b.a	ENSGT00940000155324.h	ENSGT00940000157440.m.a.d	ENSGT00940000166532.h	ENSGT00940000165503.i	ENSGT00720000108822.d	ENSGT00530000063273.b.a.a.h	ENSGT00940000155992.c.a.d	ENSGT01090000259987.a.a.a.p.a	ENSGT00940000160544.f.b	ENSGT00950000182905.a.a.a.a.b.i	ENSGT00940000156180.f.g
Coho salmon	MODERN SPECIES	11	ENSOKIG00005002569	ENSOKIG00005002579	ENSOKIG00005002593	ENSOKIG00005002658	ENSOKIG00005002946	ENSOKIG00005002976	maip1 (ENSOKIG00005003010)	ENSOKIG00005003022	HECW2 (ENSOKIG00005003105)	stk17b (ENSOKIG00005003310)	ENSOKIG00005003318	ENSOKIG00005003331	LYPD1 (ENSOKIG00005003353)	gpr39 (ENSOKIG00005003422)	SLC35F5 (ENSOKIG00005003382) #21	ACTR3 (ENSOKIG00005003482) #22	ENSOKIG00005003721 ##23	ENSOKIG00005003988	DPP10 (ENSOKIG00005003995) ##23	ddx18 (ENSOKIG00005004062) #24	gjc4b (ENSOKIG00005004791)	LCT (ENSOKIG00005004815)	ENSOKIG00005004929	hdac4 (ENSOKIG00005004948)	ENSOKIG00005005179	ENSOKIG00005005185	traf3ip1 (ENSOKIG00005005199)	agr1 (ENSOKIG00005005225)	ADARB1 (ENSOKIG00005005242)	ENSOKIG00005005265	ITGB2 (ENSOKIG00005005385)
Rainbow trout	MODERN SPECIES	21	ENSOMYG00000069344	ENSOMYG00000014202	ENSOMYG00000014230	maip1 (ENSOMYG00000014243)	PGAP1 (ENSOMYG00000014290)	ENSOMYG00000014460	stk17b (ENSOMYG00000016524)	ENSOMYG00000016537	ENSOMYG00000016540	ENSOMYG00000016571	ENSOMYG00000058260	ENSOMYG00000016614	GPR39 (ENSOMYG00000016616)	ENSOMYG00000016623	ENSOMYG00000016636 #21	ENSOMYG00000016687 #22	ENSOMYG00000047901	ENSOMYG00000016917 ##23	ENSOMYG00000019425 ##23	ENSOMYG00000023011	ENSOMYG00000026661 #24	gjc4b (ENSOMYG00000026850)	ENSOMYG00000027008	hdac4 (ENSOMYG00000027815)	twist2 (ENSOMYG00000075003)	ENSOMYG00000029407	ENSOMYG00000052562	traf3ip1 (ENSOMYG00000029507)	ENSOMYG00000064875	agr1 (ENSOMYG00000029562)	ENSOMYG00000029608
Salmo	ANCESTRAL SPECIES	15	ENSGT00940000158212.B.n	ENSGT00940000166277.a	ENSGT00940000171532	ENSGT00940000156462.B.c.a.b.a.b.b	ENSGT00940000156462.B.c.a.b.a.a.a	ENSGT00530000063564.b.b.b.b	ENSGT00940000158493.n	ENSGT00390000004145.b.e	ENSGT00390000016484	ENSGT00940000155466.e.b.r	ENSGT00940000154014.b.b.h	ENSGT00530000063607.b.j.a.b	ENSGT00390000002215.i.a.f	ENSGT01100000263518.A.a.b.rb	ENSGT00390000005949.n #21	ENSGT00940000155065.`c.a.b.b #22	ENSGT00940000154657.A.c.i ##23	ENSGT00940000154657.B.d ##23	ENSGT00680000100037.jb #24	ENSGT01090000260005.a.a.a.b.a.b.a	ENSGT00940000155324.h	ENSGT00940000157440.m.a.d	ENSGT00940000166532.h	ENSGT00940000165503.i	ENSGT00720000108822.d	ENSGT00530000063273.b.a.a.h	ENSGT00940000155992.c.a.d	ENSGT01090000259987.a.a.a.p.a	ENSGT00940000160544.f.b	ENSGT00940000167133	ENSGT00950000182905.a.a.a.a.b.i
Atlantic salmon	MODERN SPECIES	17	ENSSSAG00000050603	ENSSSAG00000087836	ENSSSAG00000113612	tyw5 (ENSSSAG00000104380)	cssa25h2orf47 (ENSSSAG00000050746)	ENSSSAG00000096142	ENSSSAG00000050758	ENSSSAG00000051028	ENSSSAG00000096506	stk17b (ENSSSAG00000057196)	ENSSSAG00000093854	ENSSSAG00000057220	ENSSSAG00000083924	GPR39 (ENSSSAG00000057249)	ENSSSAG00000057281 #21	ENSSSAG00000057782 #22	ENSSSAG00000084588	ENSSSAG00000062802 ##23	ENSSSAG00000063863 ##23	ENSSSAG00000063891 #24	gjc4b (ENSSSAG00000105948)	ENSSSAG00000064238	hdac4 (ENSSSAG00000064721)	ENSSSAG00000096490	twist2 (ENSSSAG00000109762)	ENSSSAG00000088412	ENSSSAG00000066671	traf3ip1 (ENSSSAG00000066695)	AGR3 (ENSSSAG00000066735)	ENSSSAG00000066766	ENSSSAG00000067161
River trout	MODERN SPECIES	16	cops8 (ENSSTUG00000012018)	ENSSTUG00000012028	COL6A3 (ENSSTUG00000012130)	ENSSTUG00000012354	ENSSTUG00000012406	ENSSTUG00000012702	tyw5 (ENSSTUG00000012929)	maip1 (ENSSTUG00000013025)	ENSSTUG00000013033	ENSSTUG00000013141	stk17b (ENSSTUG00000015394)	ENSSTUG00000015404	LYPD1 (ENSSTUG00000015420)	gpr39 (ENSSTUG00000015430)	SLC35F5 (ENSSTUG00000015449) #21	ENSSTUG00000015509 #22	ENSSTUG00000016645 ##23	DPP10 (ENSSTUG00000018216) ##23	ddx18 (ENSSTUG00000018342) #24	gjc4b (ENSSTUG00000019068)	LCT (ENSSTUG00000019104)	hdac4 (ENSSTUG00000019572)	ENSSTUG00000021836	ENSSTUG00000021840	hdac4 (ENSSTUG00000027555)	twist2 (ENSSTUG00000027570)	ENSSTUG00000027571	traf3ip1 (ENSSTUG00000027577)	agr1 (ENSSTUG00000027607)	ENSSTUG00000027619	ADARB1 (ENSSTUG00000027632)
Northern pike	MODERN SPECIES	15	rab17 (ENSELUG00000009631)	ENSELUG00000009514	tyw5 (ENSELUG00000009389)	maip1 (ENSELUG00000009347)	ENSELUG00000009323	HECW2 (ENSELUG00000009237)	stk17b (ENSELUG00000009179)	zgc:153521 (ENSELUG00000009172)	ftcdnl1 (ENSELUG00000009151)	ENSELUG00000009095	LYPD1 (ENSELUG00000009030)	ENSELUG00000008997	ENSELUG00000009018	gpr39 (ENSELUG00000009008)	SLC35F5 (ENSELUG00000008979) #21	actr3 (ENSELUG00000008916) #22	ENSELUG00000008743 ##23	ENSELUG00000008667 ##23	ddx18 (ENSELUG00000008640) #24	gjc4b (ENSELUG00000008615)	LCT (ENSELUG00000008584)	ENSELUG00000024888	vwc2l (ENSELUG00000008497)	ENSELUG00000008469	ABCA12 (ENSELUG00000008398)	pofut2 (ENSELUG00000008188)	MYO1B (ENSELUG00000008161)	BZW1 (ENSELUG00000008110)	ENSELUG00000033010	ENSELUG00000034188	ENSELUG00000031151
Protacanthopterygii	ANCESTRAL SPECIES	27	ENSGT00940000157230.b	ENSGT00940000155655.A	ENSGT00940000155773.a	ENSGT00940000178373	ENSGT00390000014376.c.b	ENSGT00950000183028.a.a.a.g.b	ENSGT00390000007225	ENSGT00940000157728.a.a	ENSGT00970000193621	ENSGT01100000263502.A.a.a.a.b.a.b	ENSGT00940000158714.c	ENSGT00940000158398	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.`c.b #22	ENSGT00940000154657.A.d ##23	ENSGT00940000160811.d #27	ENSGT00940000156913.b.j.a #29	ENSGT00390000008042.A.b.d #30	ENSGT00940000154846.a.a ##32	ENSGT00940000156402.A.a	ENSGT00940000173761	ENSGT00940000178790	ENSGT00390000006925 #35	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b	ENSGT00950000183055.a.a	ENSGT00940000159810
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	321									ENSGT00390000000145.g.a.a.b	ENSGT01100000263502.A.a.a.a.b.a.b.c	ENSGT00940000158714.c.a	ENSGT00940000158398.j	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b.b	ENSGT00390000002215.i.b.a.a	ENSGT00940000155065.`c.b.a #22	ENSGT00940000154657.A.d.a ##23	ENSGT00390000002215.i.b.a.b	ENSGT00940000155065.ac #22	ENSGT01100000263489.a.a.b.b.f.c.a.a.b.b.a.b.a.a.b.b	ENSGT00940000158398.i	ENSGT00530000063607.b.j.b.a.a	ENSGT00390000002215.i.b.b	ENSGT00940000155065.`c.b.b #22	ENSGT00940000154657.A.d.b ##23	ENSGT00940000160811.d.a #27	ENSGT00940000156913.b.j.a.b #29	ENSGT00390000008042.A.b.d.c #30	ENSGT00940000154846.a.a ##32	ENSGT00940000156402.A.a.a	ENSGT00940000165152
Salmoninae_a	ANCESTRAL SPECIES	97	ENSGT00940000155773.a.e	ENSGT00390000014376.c.b.c.b	ENSGT00950000183028.a.a.a.g.b.c	ENSGT00390000007225.ac	ENSGT00390000007225.`c	ENSGT00940000157728.a.a	ENSGT00970000193621.a	ENSGT00390000000145.g.b.b	ENSGT01100000263502.A.a.a.a.b.a.b.c	ENSGT00940000158714.c.a	ENSGT00940000158398.j	ENSGT00390000003114.e.b.a.f	ENSGT00390000003114.e.b.a.e.b	ENSGT00530000063607.b.j.b.b	ENSGT00390000002215.i.b.a.a	ENSGT00940000155065.`c.b.a #22	ENSGT00940000154657.A.d.a ##23	ENSGT00940000160811.d.b #27	ENSGT00940000156913.b.j.a.a #29	ENSGT00390000008042.A.b.d.d #30	ENSGT00940000156402.A.a.b.a.b	ENSGT00390000006925 #35	ENSGT00940000155607.mc.b.b	ENSGT00940000156234.a.b.a	ENSGT00940000154713.A.c.b.b	ENSGT00390000012721.b.n	ENSGT00950000183055.a.a.h	ENSGT00940000159810.e	ENSGT00940000160718.f	ENSGT00940000158453.a.h	ENSGT00940000155821.c.b.b
Salmo	ANCESTRAL SPECIES	41	ENSGT00950000183028.a.a.a.g.b.c	ENSGT00390000007225.ac	ENSGT00940000157728.a.a.e	ENSGT00970000193621.a	ENSGT00390000000145.g.a.a.b	ENSGT01100000263502.A.a.a.a.b.a.b.c	ENSGT00940000158714.c.a	ENSGT01000000215975.b.b.a.b.a.b	ENSGT01100000263505.b.b.a.a.a.a.a.i.a.b	ENSGT01100000263505.b.b.a.a.a.a.a.i.b.a	ENSGT01100000263505.b.b.a.a.a.a.a.i.a.a	ENSGT00940000158398.j	ENSGT00390000003114.e.b.a.e.b	ENSGT00530000063607.b.j.b.b	ENSGT00390000002215.i.b.a.a	ENSGT00940000155065.`c.b.a #22	ENSGT00940000154657.A.d.a ##23	ENSGT00940000160811.d.b #27	ENSGT00940000156913.b.j.a.a #29	ENSGT00390000008042.A.b.d.d #30	ENSGT00940000154846.a.a.b ##32	ENSGT00940000156402.A.a.b.b	ENSGT00390000006925 #35	ENSGT00940000155607.mc.b.b	ENSGT00940000156234.a.b.a	ENSGT00940000154713.A.c.b.b	ENSGT00390000012721.b.n	ENSGT00950000183055.a.a.h	ENSGT00940000159810.e	ENSGT00940000160718.f	ENSGT00940000158453.a.h
Atlantic salmon	MODERN SPECIES	8	fhl2b (ENSSSAG00000054289)	nck2b (ENSSSAG00000054326)	ENSSSAG00000095686	ENSSSAG00000054333	ECRG4 (ENSSSAG00000108114)	ENSSSAG00000054346	st6gal2b (ENSSSAG00000054363)	ENSSSAG00000114141	ENSSSAG00000054632	ENSSSAG00000093874	ENSSSAG00000054641	ENSSSAG00000115864	ENSSSAG00000066944	ENSSSAG00000055388	ENSSSAG00000055395	ENSSSAG00000055421 #22	ENSSSAG00000102032 ##23	ENSSSAG00000055530	EN1 (ENSSSAG00000087049) #27	ENSSSAG00000055554	C1QL2 (ENSSSAG00000055556) #29	STEAP3 (ENSSSAG00000055567) #30	ENSSSAG00000106812	ENSSSAG00000096172	ENSSSAG00000113164	cfap221 (ENSSSAG00000055630) #35	ENSSSAG00000055654	ENSSSAG00000093479	GABRA5 (ENSSSAG00000037635)	ndfip2 (ENSSSAG00000113560)	SPRY2 (ENSSSAG00000110085)
River trout	MODERN SPECIES	32	ENSSTUG00000041429	dph3 (ENSSTUG00000041381)	nck2b (ENSSTUG00000041352)	ENSSTUG00000041325	ECRG4 (ENSSTUG00000041296)	ENSSTUG00000041273	st6gal2b (ENSSTUG00000041156)	ENSSTUG00000041135	ENSSTUG00000041123	ENSSTUG00000041113	ENSSTUG00000041078	OSBPL11 (ENSSTUG00000040777)	gpd1c (ENSSTUG00000040693)	NCKAP5 (ENSSTUG00000040471)	LYPD1 (ENSSTUG00000040458)	ACTR3 (ENSSTUG00000039922) #22	ENSSTUG00000039815 ##23	en1b (ENSSTUG00000039800) #27	C1QL2 (ENSSTUG00000039793) #29	STEAP3 (ENSSTUG00000039770) #30	ENSSTUG00000039767	DBI (ENSSTUG00000039749) ##32	ENSSTUG00000039739	ENSSTUG00000039718 #35	GABRG3 (ENSSTUG00000039629)	GABRA5 (ENSSTUG00000039620)	GABRB3 (ENSSTUG00000039592)	ndfip2 (ENSSTUG00000039560)	spry2 (ENSSTUG00000039552)	ENSSTUG00000039547	SLITRK1 (ENSSTUG00000039540)
Oncorhynchus	ANCESTRAL SPECIES	43	ENSGT00940000157230.b.d	ENSGT00940000155655.A.b	ENSGT00940000155773.a.e	ENSGT00390000014376.c.b.c.b	ENSGT00950000183028.a.a.a.g.b.c	ENSGT00390000007225.ac	ENSGT00940000157728.a.a.g	ENSGT00970000193621.a.a	ENSGT00390000000145.g.b.b	ENSGT01100000263502.A.a.a.a.b.a.b.c	ENSGT00940000158714.c.a	ENSGT00940000158398.j	ENSGT00390000003114.e.b.a.f	ENSGT00530000063607.b.j.b.b	ENSGT00390000002215.i.b.b.b	ENSGT00940000155065.`c.b.a #22	ENSGT00940000154657.A.d.a ##23	ENSGT00940000160811.d.a.d #27	ENSGT00940000156913.b.j.a.a #29	ENSGT00390000008042.A.b.d.d #30	ENSGT00940000154846.a.a.a.b ##32	ENSGT00940000156402.A.a.b.a.a	ENSGT00390000006925 #35	ENSGT00940000155607.mc.b.b	ENSGT00940000156234.a.b.a	ENSGT00940000154713.A.c.b.b	ENSGT00390000012721.b.n	ENSGT00950000183055.a.a.h	ENSGT00940000159810.e	ENSGT00940000160718.f	ENSGT00940000158453.a.h
Rainbow trout	MODERN SPECIES	28	ENSOMYG00000014288	si:dkey-276j7.1 (ENSOMYG00000014260)	fhl2b (ENSOMYG00000014240)	dph3 (ENSOMYG00000014223)	nck2b (ENSOMYG00000014213)	ENSOMYG00000014200	ECRG4 (ENSOMYG00000014170)	ENSOMYG00000014119	ENSOMYG00000049105	st6gal2b (ENSOMYG00000014045)	ENSOMYG00000014027	ENSOMYG00000066186	ENSOMYG00000013984	ENSOMYG00000013923	ENSOMYG00000055245	ENSOMYG00000046679 #22	ENSOMYG00000046559 ##23	EN1 (ENSOMYG00000046484) #27	C1QL2 (ENSOMYG00000046476) #29	STEAP3 (ENSOMYG00000046463) #30	DBI (ENSOMYG00000057161) ##32	ENSOMYG00000046453	ENSOMYG00000046439 #35	GABRG3 (ENSOMYG00000046430)	ENSOMYG00000046418	GABRB3 (ENSOMYG00000046384)	ndfip2 (ENSOMYG00000051073)	ENSOMYG00000060485	SPRY2 (ENSOMYG00000046378)	ENSOMYG00000063954	SLITRK1 (ENSOMYG00000068410)
Oncorhynchus_a	ANCESTRAL SPECIES	66	ENSGT00940000155655.A.b	ENSGT00940000155773.a.e	ENSGT00390000014376.c.b.c.b	ENSGT00950000183028.a.a.a.g.b.c	ENSGT00390000007225.ac	ENSGT00940000157728.a.a.g	ENSGT00970000193621.a.a	ENSGT00390000000145.g.b.b	ENSGT01100000263502.A.a.a.a.b.a.b.c	ENSGT00940000158714.c.a	ENSGT00940000158398.j	ENSGT00390000003114.e.b.a.f	ENSGT00530000063607.b.j.b.b	ENSGT00390000002215.i.b.b.b	ENSGT00940000155065.ac #22	ENSGT00940000155065.`c.b.a #22	ENSGT00940000154657.A.d.a ##23	ENSGT00940000160811.d.a.d #27	ENSGT00940000156913.b.j.a.a #29	ENSGT00390000008042.A.b.d.d #30	ENSGT00940000154846.a.a.a.b ##32	ENSGT00940000156402.A.a.b.a.b	ENSGT00390000006925 #35	ENSGT00940000155607.mc.b.b	ENSGT00940000156234.a.b.a	ENSGT00940000154713.A.c.b.b	ENSGT00390000012721.b.n	ENSGT00950000183055.a.a.h	ENSGT00940000159810.e	ENSGT00940000160718.f	ENSGT00940000158453.a.h
Chinook salmon	MODERN SPECIES	31	fhl2b (ENSOTSG00005012379)	dph3 (ENSOTSG00005012378)	nck2b (ENSOTSG00005012377)	ENSOTSG00005012374	ECRG4 (ENSOTSG00005012373)	ENSOTSG00005012372	st6gal2b (ENSOTSG00005012366)	ENSOTSG00005012365	ENSOTSG00005012364	ENSOTSG00005012362	OSBPL11 (ENSOTSG00005012259)	gpd1c (ENSOTSG00005012239)	ENSOTSG00005012238	ENSOTSG00005012237	LYPD1 (ENSOTSG00005012235)	ENSOTSG00005012065 #22	ENSOTSG00005012055 ##23	en1b (ENSOTSG00005012050) #27	C1QL2 (ENSOTSG00005012048) #29	fam107b (ENSOTSG00005012047)	ENSOTSG00005012045	grm3 (ENSOTSG00005012042)	sema3d (ENSOTSG00005011945)	sema3ab (ENSOTSG00005010487)	ENSOTSG00005010472	desmb (ENSOTSG00005010307)	tmem198b (ENSOTSG00005010303)	ENSOTSG00005010299	MAP3K2 (ENSOTSG00005009181)	sumo1 (ENSOTSG00005009174)	FZD7 (ENSOTSG00005009171)
Salmoninae	ANCESTRAL SPECIES	321	ENSGT00390000000145.g.a.a.b	ENSGT01100000263502.A.a.a.a.b.a.b.c	ENSGT00940000158714.c.a	ENSGT00940000158398.j	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b.b	ENSGT00390000002215.i.b.a.a	ENSGT00940000155065.`c.b.a #22	ENSGT00940000154657.A.d.a ##23	ENSGT00390000002215.i.b.a.b	ENSGT00940000155065.ac #22	ENSGT01100000263489.a.a.b.b.f.c.a.a.b.b.a.b.a.a.b.b	ENSGT00940000158398.i	ENSGT00530000063607.b.j.b.a.a	ENSGT00390000002215.i.b.b	ENSGT00940000155065.`c.b.b #22	ENSGT00940000154657.A.d.b ##23	ENSGT00940000160811.d.a #27	ENSGT00940000156913.b.j.a.b #29	ENSGT00390000008042.A.b.d.c #30	ENSGT00940000154846.a.a ##32	ENSGT00940000156402.A.a.a	ENSGT00940000165152	ENSGT00940000156402.A.a.b.a.b	ENSGT00940000173761	ENSGT00940000155607.mc.b.a	ENSGT00940000156234.a.b.b	ENSGT00940000154713.A.c.b.a	ENSGT00390000012721.b.m	ENSGT00950000183055.a.a.g	ENSGT00940000159810.f
Salmoninae_a	ANCESTRAL SPECIES	49	ENSGT00940000157230.b.c	ENSGT00940000155655.A.a	ENSGT00940000155773.a.f	ENSGT00390000014376.c.b.c.a	ENSGT00950000183028.a.a.a.g.b.d	ENSGT01030000235464	ENSGT00390000000145.g.a.b	ENSGT01100000263502.A.a.a.a.b.a.b.d	ENSGT00940000158714.c.b	ENSGT01100000263489.a.a.b.b.f.c.a.a.b.b.a.b.a.a.b.b	ENSGT01090000260030.a.a.b.a.a	ENSGT00940000158398.i	ENSGT00390000003114.e.b.a.e.a	ENSGT00530000063607.b.j.b.a.a	ENSGT00390000002215.i.b.b	ENSGT00940000155065.`c.b.b #22	ENSGT00940000154657.A.d.b ##23	ENSGT00940000160811.d.a #27	ENSGT00940000156913.b.j.a.b #29	ENSGT00390000008042.A.b.d.c #30	ENSGT00940000154846.a.a.a ##32	ENSGT00940000156402.A.a.a	ENSGT00940000173761	ENSGT00940000155607.mc.b.a	ENSGT00940000156234.a.b.b	ENSGT00940000154713.A.c.b.a	ENSGT00390000012721.b.m	ENSGT00950000183055.a.a.g	ENSGT00940000159810.f	ENSGT00940000160718.e	ENSGT00940000158453.a.g
Oncorhynchus	ANCESTRAL SPECIES	49	ENSGT00950000183028.a.a.a.g.b.d	ENSGT00390000007225.`c	ENSGT00940000157728.a.a.h	ENSGT00970000193621.b	ENSGT00390000000145.g.a.b	ENSGT00970000193621.a.b	ENSGT00390000000145.g.b.a	ENSGT01100000263502.A.a.a.a.b.a.b.d	ENSGT00940000158714.c.b	ENSGT01100000263489.a.a.b.b.f.c.a.a.b.b.a.b.a.a.b.b	ENSGT01090000260030.a.a.b.a.a	ENSGT00940000158398.i	ENSGT00390000003114.e.b.a.e.a	ENSGT00530000063607.b.j.b.a.a	ENSGT00390000002215.i.b.b.a	ENSGT00940000155065.`c.b.b #22	ENSGT00940000154657.A.d.b ##23	ENSGT00940000160811.d.a.c #27	ENSGT00940000156913.b.j.a.b #29	ENSGT00390000008042.A.b.d.c #30	ENSGT00940000154846.a.a.a.a ##32	ENSGT00940000156402.A.a.a	ENSGT00940000165152	ENSGT00940000155607.mc.b.a	ENSGT00940000156234.a.b.b	ENSGT00940000154713.A.c.b.a	ENSGT00390000012721.b.m	ENSGT00950000183055.a.a.g	ENSGT00940000159810.f	ENSGT00940000160718.e	ENSGT00940000158453.a.g
Oncorhynchus_a	ANCESTRAL SPECIES	6	ENSGT00390000014376.c.b.c.a	ENSGT00950000183028.a.a.a.g.b.d	ENSGT00390000007225.`c	ENSGT00940000157728.a.a.h	ENSGT00970000193621.b	ENSGT00390000000145.g.a.b	ENSGT00390000000145.g.b.a	ENSGT01100000263502.A.a.a.a.b.a.b.d	ENSGT00940000158714.c.b	ENSGT01100000263489.a.a.b.b.f.c.a.a.b.b.a.b.a.a.b.b	ENSGT01090000260030.a.a.b.a.a	ENSGT00940000158398.i	ENSGT00390000003114.e.b.a.e.a	ENSGT00530000063607.b.j.b.a.a	ENSGT00390000002215.i.b.b.a	ENSGT00940000155065.`c.b.b #22	ENSGT00940000154657.A.d.b ##23	ENSGT00940000160811.d.a.c #27	ENSGT00940000156913.b.j.a.b #29	ENSGT00390000008042.A.b.d.c #30	ENSGT00940000154846.a.a.a.a ##32	ENSGT00940000156402.A.a.a	ENSGT00940000165152	ENSGT00940000155607.mc.b.a	ENSGT00940000156234.a.b.b	ENSGT00940000154713.A.c.b.a	ENSGT00390000012721.b.m	ENSGT00950000183055.a.a.g	ENSGT00940000159810.f	ENSGT00940000160718.e	ENSGT00940000158453.a.g
Chinook salmon	MODERN SPECIES	5	ENSOTSG00005017803	si:dkey-276j7.1 (ENSOTSG00005017796)	fhl2b (ENSOTSG00005017795)	dph3 (ENSOTSG00005017794)	nck2b (ENSOTSG00005017793)	ECRG4 (ENSOTSG00005017792)	ENSOTSG00005017791	st6gal2b (ENSOTSG00005017790)	ENSOTSG00005017788	ENSOTSG00005017787	ENSOTSG00005017786	ENSOTSG00005017711	gpd1c (ENSOTSG00005017702)	NCKAP5 (ENSOTSG00005017700)	ENSOTSG00005017694	actr3 (ENSOTSG00005016031) #22	ENSOTSG00005011897 ##23	en1b (ENSOTSG00005011884) #27	C1QL2 (ENSOTSG00005011882) #29	STEAP3 (ENSOTSG00005011880) #30	DBI (ENSOTSG00005011878) ##32	ENSOTSG00005011876	ENSOTSG00005011873	GABRG3 (ENSOTSG00005011865)	GABRA5 (ENSOTSG00005011863)	GABRB3 (ENSOTSG00005011862)	ENSOTSG00005011861	ndfip2 (ENSOTSG00005011860)	spry2 (ENSOTSG00005011859)	SLITRK1 (ENSOTSG00005011858)	slitrk6 (ENSOTSG00005011856)
Coho salmon	MODERN SPECIES	7	fhl2b (ENSOKIG00005012190)	dph3 (ENSOKIG00005012209)	nck2b (ENSOKIG00005012223)	ENSOKIG00005012243	ECRG4 (ENSOKIG00005012259)	ENSOKIG00005012268	st6gal2b (ENSOKIG00005012286)	ENSOKIG00005012357	ENSOKIG00005012359	ENSOKIG00005012372	ENSOKIG00005012382	gpd1c (ENSOKIG00005012442)	ENSOKIG00005012495	ENSOKIG00005012516	LYPD1 (ENSOKIG00005012528)	ENSOKIG00005012574 #22	ENSOKIG00005013020	ENSOKIG00005013180 ##23	EN1 (ENSOKIG00005016536) #27	C1QL2 (ENSOKIG00005016544) #29	STEAP3 (ENSOKIG00005016556) #30	DBI (ENSOKIG00005016562) ##32	ENSOKIG00005016581	ENSOKIG00005016609	GABRG3 (ENSOKIG00005016618)	GABRA5 (ENSOKIG00005016626)	GABRB3 (ENSOKIG00005016634)	ndfip2 (ENSOKIG00005016661)	ENSOKIG00005016670	SPRY2 (ENSOKIG00005016673)	SLITRK1 (ENSOKIG00005016678)
Rainbow trout	MODERN SPECIES	9	si:dkey-276j7.1 (ENSOMYG00000005165)	fhl2b (ENSOMYG00000027174)	dph3 (ENSOMYG00000027159)	nck2b (ENSOMYG00000027147)	ENSOMYG00000027142	ECRG4 (ENSOMYG00000027134)	ENSOMYG00000027123	st6gal2b (ENSOMYG00000027099)	ENSOMYG00000027057	ENSOMYG00000027054	ENSOMYG00000027044	ENSOMYG00000051479	ENSOMYG00000026942	ENSOMYG00000026801	ENSOMYG00000026755	ENSOMYG00000026466 #22	ENSOMYG00000026340	ENSOMYG00000069602	ENSOMYG00000025707 ##23	EN1 (ENSOMYG00000025464) #27	C1QL2 (ENSOMYG00000025444) #29	STEAP3 (ENSOMYG00000025427) #30	DBI (ENSOMYG00000025419) ##32	ENSOMYG00000065838	ENSOMYG00000025381	GABRG3 (ENSOMYG00000024418)	ENSOMYG00000024190	GABRB3 (ENSOMYG00000024114)	ndfip2 (ENSOMYG00000024059)	SPRY2 (ENSOMYG00000024043)	SLITRK1 (ENSOMYG00000058831)
Salmo	ANCESTRAL SPECIES																	ENSGT00940000155065.`c.b.b #22
Atlantic salmon	MODERN SPECIES	7	fhl2b (ENSSSAG00000066603)	ENSSSAG00000066644	nck2b (ENSSSAG00000066648)	ENSSSAG00000083110	ENSSSAG00000066655	ECRG4 (ENSSSAG00000110539)	ENSSSAG00000066670	ENSSSAG00000066675	st6gal2b (ENSSSAG00000066685)	ENSSSAG00000122010	ENSSSAG00000066711	ENSSSAG00000119957	ENSSSAG00000055361	ENSSSAG00000066969	ENSSSAG00000103795	ENSSSAG00000066992 #22	ENSSSAG00000067197 ##23	ENSSSAG00000092681	EN1 (ENSSSAG00000111087) #27	C1QL2 (ENSSSAG00000070885) #29	ENSSSAG00000070933	STEAP3 (ENSSSAG00000070938) #30	ENSSSAG00000110964	ENSSSAG00000070950	GABRG3 (ENSSSAG00000070959)	ENSSSAG00000070991	GABRB3 (ENSSSAG00000092168)	ndfip2 (ENSSSAG00000071066)	SPRY2 (ENSSSAG00000071081)	ENSSSAG00000099884	slitrk6 (ENSSSAG00000071089)
Huchen	MODERN SPECIES	18							ENSHHUG00000005938	ENSHHUG00000005934	ENSHHUG00000005931	ENSHHUG00000005924	OSBPL11 (ENSHHUG00000005868)	gpd1c (ENSHHUG00000005782)	ENSHHUG00000005775	ENSHHUG00000005742	LYPD1 (ENSHHUG00000005735)	ENSHHUG00000005665 #22	ENSHHUG00000005446 ##23	en1b (ENSHHUG00000005436) #27	C1QL2 (ENSHHUG00000005414) #29	STEAP3 (ENSHHUG00000005409) #30	DBI (ENSHHUG00000005403) ##32	ENSHHUG00000005357	ENSHHUG00000005341	GABRG3 (ENSHHUG00000005307)	GABRA5 (ENSHHUG00000005301)	GABRB3 (ENSHHUG00000005287)	ndfip2 (ENSHHUG00000005282)	spry2 (ENSHHUG00000005279)	SLITRK1 (ENSHHUG00000005271)	slitrk6 (ENSHHUG00000005269)	SLITRK5 (ENSHHUG00000005264)
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00940000155065.ac #22
Northern pike	MODERN SPECIES	21	ENSELUG00000019595	wdsub1 (ENSELUG00000019642)	ENSELUG00000019725	ENSELUG00000019828	si:dkey-276j7.1 (ENSELUG00000019885)	fhl2b (ENSELUG00000019918)	dph3 (ENSELUG00000019946)	nck2b (ENSELUG00000019964)	ECRG4 (ENSELUG00000033126)	ENSELUG00000020002	st6gal2b (ENSELUG00000020025)	OSBPL11 (ENSELUG00000020068)	gpd1c (ENSELUG00000020097)	NCKAP5 (ENSELUG00000020214)	LYPD1 (ENSELUG00000020286)	ENSELUG00000020305 #22	ENSELUG00000020446 ##23	en1b (ENSELUG00000020464) #27	C1QL2 (ENSELUG00000020473) #29	STEAP3 (ENSELUG00000020486) #30	DBI (ENSELUG00000020520) ##32	ENSELUG00000020562	ENSELUG00000033577	ENSELUG00000020624 #35	GABRG3 (ENSELUG00000020670)	GABRA5 (ENSELUG00000020706)	GABRB3 (ENSELUG00000020729)	ndfip2 (ENSELUG00000028282)	spry2 (ENSELUG00000020786)	SLITRK1 (ENSELUG00000034451)	slitrk6 (ENSELUG00000027650)
Salmoninae	ANCESTRAL SPECIES	321						ENSGT00390000000145.g.a.a.b	ENSGT01100000263502.A.a.a.a.b.a.b.c	ENSGT00940000158714.c.a	ENSGT00940000158398.j	ENSGT00390000003114.e.b.a	ENSGT00530000063607.b.j.b.b	ENSGT00390000002215.i.b.a.a	ENSGT00940000155065.`c.b.a #22	ENSGT00940000154657.A.d.a ##23	ENSGT00390000002215.i.b.a.b	ENSGT00940000155065.ac #22	ENSGT01100000263489.a.a.b.b.f.c.a.a.b.b.a.b.a.a.b.b	ENSGT00940000158398.i	ENSGT00530000063607.b.j.b.a.a	ENSGT00390000002215.i.b.b	ENSGT00940000155065.`c.b.b #22	ENSGT00940000154657.A.d.b ##23	ENSGT00940000160811.d.a #27	ENSGT00940000156913.b.j.a.b #29	ENSGT00390000008042.A.b.d.c #30	ENSGT00940000154846.a.a ##32	ENSGT00940000156402.A.a.a	ENSGT00940000165152	ENSGT00940000156402.A.a.b.a.b	ENSGT00940000173761	ENSGT00940000155607.mc.b.a
Salmoninae_a	ANCESTRAL SPECIES	629															ENSGT00390000002215.i.b.a.b	ENSGT00940000155065.ac #22
Salmo	ANCESTRAL SPECIES	48	ENSGT00390000014376.c.b.d.b	ENSGT00950000183028.a.a.a.g.b.d	ENSGT00390000007225.`c	ENSGT00940000157728.a.a.f	ENSGT00970000193621.b	ENSGT00390000000145.g.b.a	ENSGT00940000163467.a.b.a.b.c.b.a.b.d.a	ENSGT01100000263502.A.a.a.a.b.a.b.d	ENSGT00940000158714.c.b	ENSGT01100000263489.a.a.b.b.f.c.a.a.b.b.a.b.a.a.b.b	ENSGT01090000260030.a.a.b.a.a	ENSGT00940000158398.i	ENSGT00390000003114.e.b.a.e.a	ENSGT00530000063607.b.j.b.a.a	ENSGT00390000002215.i.b.a.b	ENSGT00940000155065.ac #22	ENSGT00940000154657.A.d.b ##23	ENSGT00940000160811.d.a #27	ENSGT00940000156913.b.j.a.b #29	ENSGT01100000264922.a	ENSGT00390000008042.A.b.d.c #30	ENSGT00940000154846.a.a.a ##32	ENSGT00940000156402.A.a.a	ENSGT00940000173761	ENSGT00940000155607.mc.b.a	ENSGT00940000156234.a.b.b	ENSGT00940000154713.A.c.b.a	ENSGT00390000012721.b.m	ENSGT00950000183055.a.a.g	ENSGT00940000159810.f	ENSGT00940000160718.e
River trout	MODERN SPECIES	36	dph3 (ENSSTUG00000014081)	nck2b (ENSSTUG00000014086)	ENSSTUG00000014091	ECRG4 (ENSSTUG00000014097)	ENSSTUG00000014107	ENSSTUG00000014120	st6gal2b (ENSSTUG00000014196)	ENSSTUG00000014203	ENSSTUG00000014215	ENSSTUG00000014217	ENSSTUG00000014224	ENSSTUG00000014235	gpd1c (ENSSTUG00000014468)	NCKAP5 (ENSSTUG00000014501)	LYPD1 (ENSSTUG00000014520)	actr3 (ENSSTUG00000014546) #22	ENSSTUG00000015070 ##23	en1b (ENSSTUG00000016497) #27	C1QL2 (ENSSTUG00000016501) #29	ENSSTUG00000016514	STEAP3 (ENSSTUG00000016577) #30	DBI (ENSSTUG00000016581) ##32	ENSSTUG00000016586	ENSSTUG00000016603	GABRG3 (ENSSTUG00000016625)	GABRA5 (ENSSTUG00000016656)	GABRB3 (ENSSTUG00000016691)	ndfip2 (ENSSTUG00000016744)	spry2 (ENSSTUG00000016775)	SLITRK1 (ENSSTUG00000016778)	slitrk6 (ENSSTUG00000016779)
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00940000155065.ac #22
Oncorhynchus_a	ANCESTRAL SPECIES	66	ENSGT00940000157230.b.d	ENSGT00940000155655.A.b	ENSGT00940000155773.a.e	ENSGT00390000014376.c.b.c.b	ENSGT00950000183028.a.a.a.g.b.c	ENSGT00390000007225.ac	ENSGT00940000157728.a.a.g	ENSGT00970000193621.a.a	ENSGT00390000000145.g.b.b	ENSGT01100000263502.A.a.a.a.b.a.b.c	ENSGT00940000158714.c.a	ENSGT00940000158398.j	ENSGT00390000003114.e.b.a.f	ENSGT00530000063607.b.j.b.b	ENSGT00390000002215.i.b.b.b	ENSGT00940000155065.ac #22	ENSGT00940000155065.`c.b.a #22	ENSGT00940000154657.A.d.a ##23	ENSGT00940000160811.d.a.d #27	ENSGT00940000156913.b.j.a.a #29	ENSGT00390000008042.A.b.d.d #30	ENSGT00940000154846.a.a.a.b ##32	ENSGT00940000156402.A.a.b.a.b	ENSGT00390000006925 #35	ENSGT00940000155607.mc.b.b	ENSGT00940000156234.a.b.a	ENSGT00940000154713.A.c.b.b	ENSGT00390000012721.b.n	ENSGT00950000183055.a.a.h	ENSGT00940000159810.e	ENSGT00940000160718.f
Coho salmon	MODERN SPECIES	25	fhl2b (ENSOKIG00005031455)	dph3 (ENSOKIG00005031444)	nck2b (ENSOKIG00005031427)	ENSOKIG00005031404	ECRG4 (ENSOKIG00005031294)	ENSOKIG00005031278	st6gal2b (ENSOKIG00005031215)	ENSOKIG00005031194	ENSOKIG00005031179	OSBPL11 (ENSOKIG00005031130)	ENSOKIG00005031118	ENSOKIG00005030980	ENSOKIG00005030967	NCKAP5 (ENSOKIG00005030956)	LYPD1 (ENSOKIG00005030951)	ENSOKIG00005030067 #22	ENSOKIG00005029021 ##23	en1b (ENSOKIG00005028929) #27	C1QL2 (ENSOKIG00005028915) #29	ENSOKIG00005028895 ##32	ENSOKIG00005028885	ENSOKIG00005028866 #35	GABRG3 (ENSOKIG00005028801)	GABRA5 (ENSOKIG00005028780)	GABRB3 (ENSOKIG00005028726)	ndfip2 (ENSOKIG00005028667)	spry2 (ENSOKIG00005028657)	SLITRK1 (ENSOKIG00005050752)	ENSOKIG00005050750	slitrk6 (ENSOKIG00005050749)	SLITRK5 (ENSOKIG00005050745)
Huchen	DUPLICATION
Huchen	MODERN SPECIES	637				NCK2 (ENSHHUG00000037947)	ENSHHUG00000037955	ENSHHUG00000037962	ENSHHUG00000037965	ENSHHUG00000038036	ENSHHUG00000038071	ENSHHUG00000038074	ENSHHUG00000038082	OSBPL11 (ENSHHUG00000038087)	gpd1c (ENSHHUG00000038101)	NCKAP5 (ENSHHUG00000038135)	LYPD1 (ENSHHUG00000038145)	ENSHHUG00000038152 #22	ENSHHUG00000038444 ##23
Huchen	MODERN SPECIES	1911													gpr39 (ENSHHUG00000005899)	SLC35F5 (ENSHHUG00000005836) #21	ENSHHUG00000005826	actr3 (ENSHHUG00000005513) #22
Huchen	MODERN SPECIES	448										msi2b (ENSHHUG00000032240)	ENSHHUG00000032219	nos2a (ENSHHUG00000031793)	lyrm9 (ENSHHUG00000031772)	nlk2 (ENSHHUG00000031738)	ENSHHUG00000031735	ENSHHUG00000031721 #22	ENSHHUG00000031710	ENSHHUG00000031708	ENSHHUG00000031700	WSCD1 (ENSHHUG00000031691)	gucy2f (ENSHHUG00000031517)	serpinh1b (ENSHHUG00000031500)	GDPD5 (ENSHHUG00000031429)	hspa13 (ENSHHUG00000031423)	samsn1a (ENSHHUG00000031399)	ENSHHUG00000031395	ENSHHUG00000031387	med17 (ENSHHUG00000031354)	ENSHHUG00000031338	ENSHHUG00000031328	ENSHHUG00000031300
Elephant shark	MODERN SPECIES	1530	LCT (ENSCMIG00000008504)	UBXN4 (ENSCMIG00000008493)	R3HDM1 (ENSCMIG00000008457)	ZRANB3 (ENSCMIG00000008375)	rab3gap1 (ENSCMIG00000008312)	ENSCMIG00000008296	ENSCMIG00000008294	ccnt2a (ENSCMIG00000008284)	acmsd (ENSCMIG00000008270)	tmem163a (ENSCMIG00000008264)	mgat5 (ENSCMIG00000008251)	ENSCMIG00000008243	LYPD1 (ENSCMIG00000008240)	gpr39 (ENSCMIG00000008236)	SLC35F5 (ENSCMIG00000008172) #21	actr3 (ENSCMIG00000007938) #22	ENSCMIG00000007872	DPP10 (ENSCMIG00000007762) #23	ddx18 (ENSCMIG00000007666) #24	ENSCMIG00000007657	ccdc93 (ENSCMIG00000007585) #25	insig2 (ENSCMIG00000007551) #26	en1b (ENSCMIG00000007547) #27	marco (ENSCMIG00000007543)	C1QL2 (ENSCMIG00000007538) #29	STEAP3 (ENSCMIG00000007534) #30	zgc:101851 (ENSCMIG00000007532) #31	DBI (ENSCMIG00000007526) #32	ENSCMIG00000007522	tmem37 (ENSCMIG00000007517) #33	ENSCMIG00000007492 #34