Murinae	ANCESTRAL SPECIES	7	ENSGT00940000156722	ENSGT00940000154245.A	ENSGT00940000159531 #8	ENSGT00390000009693 #9	ENSGT00390000002292.b #10	ENSGT00940000159591 #11	ENSGT00940000159349 #12	ENSGT00940000157139 #14	ENSGT00940000157692 #15	ENSGT00940000157213 #16	ENSGT00940000156944 #17	ENSGT00390000012630.A #18	ENSGT00390000010107 #19	ENSGT00940000157281 #20	ENSGT00950000182859.A.a.b.b #21	ENSGT00940000155650 #22	ENSGT00390000012944 #23	ENSGT00390000011705 #24	ENSGT00940000161042 #25	ENSGT00940000159624	ENSGT00940000159087 #27	ENSGT00390000013517 #29	ENSGT00500000044831.a.a.b #28	ENSGT00940000158850 #30	ENSGT00940000162063 #31	ENSGT00940000154444.B #32	ENSGT00940000154444.A #33	ENSGT00940000159345.l.c #34	ENSGT00940000159345.l.d #35	ENSGT00520000062120 #36	ENSGT00940000159345.k.b #37
Mus	ANCESTRAL SPECIES	2	ENSGT00860000136074 #7	ENSGT00940000159531 #8	ENSGT00390000009693 #9	ENSGT00390000002292.b #10	ENSGT00940000159591 #11	ENSGT00940000159349 #12	ENSGT00860000135873 #13	ENSGT00940000157139 #14	ENSGT00940000157692 #15	ENSGT00940000157213 #16	ENSGT00940000156944 #17	ENSGT00390000012630.A #18	ENSGT00390000010107 #19	ENSGT00940000157281 #20	ENSGT00950000182859.A.a.b.b #21	ENSGT00940000155650 #22	ENSGT00390000012944 #23	ENSGT00390000011705 #24	ENSGT00940000161042 #25	ENSGT00940000159087 #27	ENSGT00390000013517 #29	ENSGT00500000044831.a.a.b #28	ENSGT00940000158850 #30	ENSGT00940000162063 #31	ENSGT00940000154444.B #32	ENSGT00940000154444.A #33	ENSGT00940000159345.l.c #34	ENSGT00940000159345.l.d #35	ENSGT00520000062120 #36	ENSGT00940000159345.k.b #37	ENSGT00940000159345.k.a ##37
Mus_A	ANCESTRAL SPECIES	2	ENSGT00860000136074 #7	ENSGT00940000159531 #8	ENSGT00390000009693 #9	ENSGT00390000002292.b #10	ENSGT00940000159591 #11	ENSGT00940000159349 #12	ENSGT00860000135873 #13	ENSGT00940000157139 #14	ENSGT00940000157692 #15	ENSGT00940000157213 #16	ENSGT00940000156944 #17	ENSGT00390000012630.A #18	ENSGT00390000010107 #19	ENSGT00940000157281 #20	ENSGT00950000182859.A.a.b.b #21	ENSGT00940000155650 #22	ENSGT00390000012944 #23	ENSGT00390000011705 #24	ENSGT00940000161042 #25	ENSGT00940000159087 #27	ENSGT00390000013517 #29	ENSGT00500000044831.a.a.b #28	ENSGT00940000158850 #30	ENSGT00940000162063 #31	ENSGT00940000154444.B #32	ENSGT00940000154444.A #33	ENSGT00940000159345.l.c #34	ENSGT00940000159345.l.d #35	ENSGT00520000062120 #36	ENSGT00940000159345.k.b #37	ENSGT00940000159345.k.a ##37
Ryukyu mouse	MODERN SPECIES	2	MGP_CAROLIEiJ_G0016219 #7	Atp10b (MGP_CAROLIEiJ_G0016220) #8	Pttg1 (MGP_CAROLIEiJ_G0016221) #9	Slu7 (MGP_CAROLIEiJ_G0016222) #10	C1qtnf2 (MGP_CAROLIEiJ_G0016223) #11	Ccnjl (MGP_CAROLIEiJ_G0016224) #12	MGP_CAROLIEiJ_G0016225 #13	Fabp6 (MGP_CAROLIEiJ_G0016226) #14	Pwwp2a (MGP_CAROLIEiJ_G0016227) #15	Ttc1 (MGP_CAROLIEiJ_G0016228) #16	Adra1b (MGP_CAROLIEiJ_G0016229) #17	Il12b (MGP_CAROLIEiJ_G0016230) #18	Ublcp1 (MGP_CAROLIEiJ_G0016231) #19	Rnf145 (MGP_CAROLIEiJ_G0016232) #20	Ebf1 (MGP_CAROLIEiJ_G0016233) #21	Clint1 (MGP_CAROLIEiJ_G0016234) #22	Lsm11 (MGP_CAROLIEiJ_G0016235) #23	Thg1l (MGP_CAROLIEiJ_G0016236) #24	Sox30 (MGP_CAROLIEiJ_G0016237) #25	Adam19 (MGP_CAROLIEiJ_G0016238) #26	Nipal4 (MGP_CAROLIEiJ_G0016239) #27	Cyfip2 (MGP_CAROLIEiJ_G0016240) #28	Fndc9 (MGP_CAROLIEiJ_G0016241) #29	Itk (MGP_CAROLIEiJ_G0016242) #30	Garin3 (MGP_CAROLIEiJ_G0016243) #31	Med7 (MGP_CAROLIEiJ_G0016244) #32	Havcr2 (MGP_CAROLIEiJ_G0016245) #33	Gm12169 (MGP_CAROLIEiJ_G0016246) #34	BC053393 (MGP_CAROLIEiJ_G0016247) #35	Dppa1 (MGP_CAROLIEiJ_G0016248) #36	MGP_CAROLIEiJ_G0016249 #37
Mus_B	ANCESTRAL SPECIES	2	ENSGT00860000136074 #7	ENSGT00940000159531 #8	ENSGT00390000009693 #9	ENSGT00390000002292.b #10	ENSGT00940000159591 #11	ENSGT00940000159349 #12	ENSGT00860000135873 #13	ENSGT00940000157139 #14	ENSGT00940000157692 #15	ENSGT00940000157213 #16	ENSGT00940000156944 #17	ENSGT00390000012630.A #18	ENSGT00390000010107 #19	ENSGT00940000157281 #20	ENSGT00950000182859.A.a.b.b #21	ENSGT00940000155650 #22	ENSGT00390000012944 #23	ENSGT00390000011705 #24	ENSGT00940000161042 #25	ENSGT00940000159087 #27	ENSGT00390000013517 #29	ENSGT00500000044831.a.a.b #28	ENSGT00940000158850 #30	ENSGT00940000162063 #31	ENSGT00940000154444.B #32	ENSGT00940000154444.A #33	ENSGT00940000159345.l.c #34	ENSGT00940000159345.l.d #35	ENSGT00520000062120 #36	ENSGT00940000159345.k.b #37	ENSGT00940000159345.k.a ##37
Mouse	MODERN SPECIES	2	Gabra6 (ENSMUSG00000020428)	Gabrb2 (ENSMUSG00000007653)	Atp10b (ENSMUSG00000055415) #8	Pttg1 (ENSMUSG00000020415) #9	Slu7 (ENSMUSG00000020409) #10	C1qtnf2 (ENSMUSG00000046491) #11	Ccnjl (ENSMUSG00000044707) #12	Fabp6 (ENSMUSG00000020405) #14	Pwwp2a (ENSMUSG00000044950) #15	Ttc1 (ENSMUSG00000041278) #16	Adra1b (ENSMUSG00000050541) #17	Il12b (ENSMUSG00000004296) #18	Ublcp1 (ENSMUSG00000041231) #19	Rnf145 (ENSMUSG00000019189) #20	Ebf1 (ENSMUSG00000057098) #21	Clint1 (ENSMUSG00000006169) #22	Lsm11 (ENSMUSG00000044847) #23	Thg1l (ENSMUSG00000011254) #24	Sox30 (ENSMUSG00000040489) #25	Gm12166 (ENSMUSG00000069899)	Adam19 (ENSMUSG00000011256) #26	Nipal4 (ENSMUSG00000020411) #27	Cyfip2 (ENSMUSG00000020340) #28	Fndc9 (ENSMUSG00000048721) #29	Itk (ENSMUSG00000020395) #30	Garin3 (ENSMUSG00000020401) #31	Med7 (ENSMUSG00000020397) #32	Havcr2 (ENSMUSG00000020399) #33	Gm12169 (ENSMUSG00000078924) #34	BC053393 (ENSMUSG00000046974) #35	Dppa1 (ENSMUSG00000064010) #36
Mus_C	ANCESTRAL SPECIES	3	ENSGT00860000136074 #7	ENSGT00940000159531 #8	ENSGT00390000009693 #9	ENSGT00390000002292.b #10	ENSGT00940000159591 #11	ENSGT00940000159349 #12	ENSGT00860000135873 #13	ENSGT00940000157139 #14	ENSGT00940000157692 #15	ENSGT00940000157213 #16	ENSGT00940000156944 #17	ENSGT00390000012630.A #18	ENSGT00390000010107 #19	ENSGT00940000157281 #20	ENSGT00950000182859.A.a.b.b #21	ENSGT00940000155650 #22	ENSGT00390000012944 #23	ENSGT00390000011705 #24	ENSGT00940000161042 #25	ENSGT00940000159087 #27	ENSGT00390000013517 #29	ENSGT00500000044831.a.a.b #28	ENSGT00940000158850 #30	ENSGT00940000162063 #31	ENSGT00940000154444.B #32	ENSGT00940000154444.A #33	ENSGT00940000159345.l.c #34	ENSGT00940000159345.l.d #35	ENSGT00520000062120 #36	ENSGT00940000159345.k.b #37	ENSGT00940000159345.k.a ##37
spretus	MODERN SPECIES	2	MGP_SPRETEiJ_G0017060 #7	Atp10b (MGP_SPRETEiJ_G0017061) #8	Pttg1 (MGP_SPRETEiJ_G0017062) #9	Slu7 (MGP_SPRETEiJ_G0017063) #10	C1qtnf2 (MGP_SPRETEiJ_G0017064) #11	Ccnjl (MGP_SPRETEiJ_G0017065) #12	MGP_SPRETEiJ_G0017066 #13	Fabp6 (MGP_SPRETEiJ_G0017067) #14	Pwwp2a (MGP_SPRETEiJ_G0017068) #15	Ttc1 (MGP_SPRETEiJ_G0017069) #16	Adra1b (MGP_SPRETEiJ_G0017070) #17	Il12b (MGP_SPRETEiJ_G0017071) #18	Ublcp1 (MGP_SPRETEiJ_G0017072) #19	Rnf145 (MGP_SPRETEiJ_G0017073) #20	Ebf1 (MGP_SPRETEiJ_G0017074) #21	Clint1 (MGP_SPRETEiJ_G0017075) #22	Lsm11 (MGP_SPRETEiJ_G0017076) #23	Thg1l (MGP_SPRETEiJ_G0017077) #24	Sox30 (MGP_SPRETEiJ_G0017078) #25	Adam19 (MGP_SPRETEiJ_G0017079) #26	Nipal4 (MGP_SPRETEiJ_G0017080) #27	Cyfip2 (MGP_SPRETEiJ_G0017081) #28	Fndc9 (MGP_SPRETEiJ_G0017082) #29	Itk (MGP_SPRETEiJ_G0017083) #30	Garin3 (MGP_SPRETEiJ_G0017084) #31	Med7 (MGP_SPRETEiJ_G0017085) #32	Havcr2 (MGP_SPRETEiJ_G0017086) #33	Gm12169 (MGP_SPRETEiJ_G0017087) #34	BC053393 (MGP_SPRETEiJ_G0017088) #35	Dppa1 (MGP_SPRETEiJ_G0017089) #36	Timd2 (MGP_SPRETEiJ_G0017090) #37
Steppe mouse	MODERN SPECIES	2745																Clint1 (ENSMSIG00000032206) #22	Lsm11 (ENSMSIG00000032205) #23	Thg1l (ENSMSIG00000032204) #24	ENSMSIG00000032203 #25	Adam19 (ENSMSIG00000032202) #26	Nipal4 (ENSMSIG00000032201) #27	Fndc9 (ENSMSIG00000032198) #29	Cyfip2 (ENSMSIG00000032197) #28	Itk (ENSMSIG00000032196) #30	Garin3 (ENSMSIG00000032195) #31	Med7 (ENSMSIG00000032194) #32	ENSMSIG00000032193	Havcr2 (ENSMSIG00000032192) #33
Shrew mouse	MODERN SPECIES	5	MGP_PahariEiJ_G0017355 #7	Atp10b (MGP_PahariEiJ_G0017356) #8	Pttg1 (MGP_PahariEiJ_G0017357) #9	Slu7 (MGP_PahariEiJ_G0017358) #10	C1qtnf2 (MGP_PahariEiJ_G0017359) #11	Ccnjl (MGP_PahariEiJ_G0017360) #12	MGP_PahariEiJ_G0017361 #13	Fabp6 (MGP_PahariEiJ_G0017362) #14	Pwwp2a (MGP_PahariEiJ_G0017363) #15	Ttc1 (MGP_PahariEiJ_G0017364) #16	Adra1b (MGP_PahariEiJ_G0017365) #17	Il12b (MGP_PahariEiJ_G0017366) #18	Ublcp1 (MGP_PahariEiJ_G0017367) #19	MGP_PahariEiJ_G0017368 #20	Ebf1 (MGP_PahariEiJ_G0017369) #21	Clint1 (MGP_PahariEiJ_G0017370) #22	Lsm11 (MGP_PahariEiJ_G0017371) #23	Thg1l (MGP_PahariEiJ_G0017372) #24	Sox30 (MGP_PahariEiJ_G0017373) #25	Adam19 (MGP_PahariEiJ_G0017374) #26	Nipal4 (MGP_PahariEiJ_G0017375) #27	Cyfip2 (MGP_PahariEiJ_G0017376) #28	Fndc9 (MGP_PahariEiJ_G0017377) #29	Itk (MGP_PahariEiJ_G0017378) #30	Garin3 (MGP_PahariEiJ_G0017379) #31	Med7 (MGP_PahariEiJ_G0017380) #32	Havcr2 (MGP_PahariEiJ_G0017381) #33	Gm12169 (MGP_PahariEiJ_G0017382) #34	BC053393 (MGP_PahariEiJ_G0017383) #35	MGP_PahariEiJ_G0017384 #36	MGP_PahariEiJ_G0017385 #37
Rat	MODERN SPECIES	1	Atp10b (ENSRNOG00000003781) #8	Pttg1 (ENSRNOG00000003802) #9	Slu7 (ENSRNOG00000003822) #10	C1qtnf2 (ENSRNOG00000003870) #11	Ccnjl (ENSRNOG00000003893) #12	Fabp6 (ENSRNOG00000003902) #14	Pwwp2a (ENSRNOG00000003936) #15	ENSRNOG00000064611	Ttc1 (ENSRNOG00000003980) #16	Adra1b (ENSRNOG00000060087) #17	AABR07029470.2 (ENSRNOG00000058024)	Il12b (ENSRNOG00000004380) #18	Ublcp1 (ENSRNOG00000004477) #19	Rnf145 (ENSRNOG00000004602) #20	Ebf1 (ENSRNOG00000028845) #21	Clint1 (ENSRNOG00000005406) #22	Lsm11 (ENSRNOG00000005450) #23	Thg1l (ENSRNOG00000005539) #24	Sox30 (ENSRNOG00000006098) #25	Adam19 (ENSRNOG00000042980)	Nipal4 (ENSRNOG00000006255) #27	Cyfip2 (ENSRNOG00000006557) #28	Fndc9 (ENSRNOG00000006549) #29	Itk (ENSRNOG00000006860) #30	Garin3 (ENSRNOG00000021425) #31	Med7 (ENSRNOG00000007053) #32	Havcr2 (ENSRNOG00000031443) #33	LOC100359777 (ENSRNOG00000043422) #34	LOC689968 (ENSRNOG00000042265) #35	Dppa1 (ENSRNOG00000043293) #36	Timd2 (ENSRNOG00000021345) #37