Fungi/Metazoa group	ANCESTRAL SPECIES																	ENSGT00390000002732 #22
Bilateria	ANCESTRAL SPECIES																	ENSGT00390000002732 #22
Chordata	ANCESTRAL SPECIES																	ENSGT00390000002732 #22
Vertebrata	ANCESTRAL SPECIES	1101															ENSGT00960000187074	ENSGT00390000002732 #22
Gnathostomata	ANCESTRAL SPECIES	1709															ENSGT00960000187074	ENSGT00390000002732 #22
Euteleostomi	ANCESTRAL SPECIES	1402															ENSGT00960000187074	ENSGT00390000002732 #22
Sarcopterygii	ANCESTRAL SPECIES																	ENSGT00390000002732 #22
Tetrapoda	ANCESTRAL SPECIES	459															ENSGT00390000010799 #21	ENSGT00390000002732 #22
Amniota	DUPLICATION
Amniota	ANCESTRAL SPECIES	246															ENSGT00390000010799 #21	ENSGT00390000002732.n #22
Mammalia	ANCESTRAL SPECIES	104	ENSGT00390000007725.B.c	ENSGT00940000162339	ENSGT00940000160292	ENSGT00940000153222.a.b.a	ENSGT01050000244900.a.b	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000161485 #11	ENSGT00420000029926 #14	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799 #21	ENSGT00390000002732.n #22
Theria	ANCESTRAL SPECIES	37	ENSGT01050000244900.a.b	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00950000185347	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799 #21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT01100000267133	ENSGT00390000010727 #37
Eutheria	ANCESTRAL SPECIES	21	ENSGT00940000163157 #9	ENSGT00940000165610	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00950000185347	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.a ##21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT01100000267133	ENSGT00390000010727 #37
Boreoeutheria	ANCESTRAL SPECIES	5	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.a #21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT01100000267133
Euarchontoglires	ANCESTRAL SPECIES	5	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.a #21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT01100000267133
Euarchontoglires_A	ANCESTRAL SPECIES	7	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.a #21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000114226	ENSGT00940000175482	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36
Glires	ANCESTRAL SPECIES	6	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.a #21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT01100000267133
Rodentia	DUPLICATION
Rodentia	ANCESTRAL SPECIES	8	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.a #21	ENSGT00390000002732.n.`b #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT01100000267133
Rodentia_A	ANCESTRAL SPECIES	6	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.a #21	ENSGT00390000002732.n.`b #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT01100000267133
Sciuridae	ANCESTRAL SPECIES	36	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.a #21	ENSGT00390000002732.n.`b #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Marmotini	ANCESTRAL SPECIES	7	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.a.d ##21	ENSGT00390000002732.n.`b #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a.c #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Alpin marmot	DUPLICATION
Alpin marmot	MODERN SPECIES	45	HRC (ENSMMMG00000011025) #7	TRPM4 (ENSMMMG00000009725) #8	ENSMMMG00000009686 #9	SLC6A16 (ENSMMMG00000009666) #10	CD37 (ENSMMMG00000009568) #11	TEAD2 (ENSMMMG00000009513) #12	DKKL1 (ENSMMMG00000009496) #13	KASH5 (ENSMMMG00000009443) #14	PTH2 (ENSMMMG00000009431) #15	GFY (ENSMMMG00000009423) #16	SLC17A7 (ENSMMMG00000009401) #17	PIH1D1 (ENSMMMG00000009345) #18	ALDH16A1 (ENSMMMG00000009292) #19	FLT3LG (ENSMMMG00000009274) #20	ENSMMMG00000009223 #21	RPS11 (ENSMMMG00000009205) #22	FCGRT (ENSMMMG00000009200) #23	RCN3 (ENSMMMG00000009187) #24	NOSIP (ENSMMMG00000009170) #25	PRRG2 (ENSMMMG00000009090) #26	PRR12 (ENSMMMG00000008958) #27	RRAS (ENSMMMG00000008947) #28	ENSMMMG00000008939 #29	ENSMMMG00000008929 #30	IRF3 (ENSMMMG00000008918) #31	BCL2L12 (ENSMMMG00000008873) #32	PRMT1 (ENSMMMG00000008667) #33	CPT1C (ENSMMMG00000008619) #34	TSKS (ENSMMMG00000008591) #35	AP2A1 (ENSMMMG00000008509) #36	FUZ (ENSMMMG00000008435) #37
Alpin marmot	MODERN SPECIES	73	C1QTNF12 (ENSMMMG00000020956)	UBE2J2 (ENSMMMG00000020952)	ENSMMMG00000020944	ACAP3 (ENSMMMG00000020193)	PUSL1 (ENSMMMG00000020168)	INTS11 (ENSMMMG00000020151)	CPTP (ENSMMMG00000020146)	TAS1R3 (ENSMMMG00000020135)	DVL1 (ENSMMMG00000020124)	AURKAIP1 (ENSMMMG00000020118)	CCNL2 (ENSMMMG00000020112)	ENSMMMG00000020095	ENSMMMG00000020093	VWA1 (ENSMMMG00000020087)	ATAD3A (ENSMMMG00000020062)	ENSMMMG00000020057 ##22	ENSMMMG00000020051	MIB2 (ENSMMMG00000019966)	ENSMMMG00000019177	SLC35E2B (ENSMMMG00000019163)	NADK (ENSMMMG00000019153)	GNB1 (ENSMMMG00000019141)	CALML6 (ENSMMMG00000019136)	TMEM52 (ENSMMMG00000019122)	ENSMMMG00000019112	GABRD (ENSMMMG00000019103)	PRKCZ (ENSMMMG00000019084)	ENSMMMG00000019075	MORN1 (ENSMMMG00000019043)	RER1 (ENSMMMG00000019040)	PEX10 (ENSMMMG00000019038)
Marmotini_b	ANCESTRAL SPECIES	22	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.a.d ##21	ENSGT00390000002732.n.`b #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a.c #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Arctic ground squirrel	MODERN SPECIES	332	HRC (ENSUPAG00010013283) #7	TRPM4 (ENSUPAG00010013291) #8	ENSUPAG00010013350 #9	SLC6A16 (ENSUPAG00010013358) #10	CD37 (ENSUPAG00010013380) #11	TEAD2 (ENSUPAG00010013409) #12	DKKL1 (ENSUPAG00010013475) #13	KASH5 (ENSUPAG00010013497) #14	PTH2 (ENSUPAG00010013534) #15	GFY (ENSUPAG00010013540) #16	SLC17A7 (ENSUPAG00010013549) #17	PIH1D1 (ENSUPAG00010013578) #18	ALDH16A1 (ENSUPAG00010013606) #19	FLT3LG (ENSUPAG00010013649) #20	ENSUPAG00010013671 ##21	RPS11 (ENSUPAG00010013718) #22	FCGRT (ENSUPAG00010013737) #23	RCN3 (ENSUPAG00010013756) #24	NOSIP (ENSUPAG00010013771) #25	ENSUPAG00010013794 #26	PRR12 (ENSUPAG00010013819) #27	RRAS (ENSUPAG00010013833) #28	SCAF1 (ENSUPAG00010013843) #29	IRF3 (ENSUPAG00010013866) #31	BCL2L12 (ENSUPAG00010013879) #32	PRMT1 (ENSUPAG00010013901) #33	ENSUPAG00010013972	CPT1C (ENSUPAG00010013990) #34	TSKS (ENSUPAG00010014030) #35	AP2A1 (ENSUPAG00010014052) #36	FUZ (ENSUPAG00010014135) #37
Squirrel	MODERN SPECIES	264	HRC (ENSSTOG00000021781) #7	TRPM4 (ENSSTOG00000026855) #8	ENSSTOG00000020728 #9	ENSSTOG00000031718	CD37 (ENSSTOG00000022179) #11	TEAD2 (ENSSTOG00000012695) #12	DKKL1 (ENSSTOG00000025892) #13	KASH5 (ENSSTOG00000012706) #14	PTH2 (ENSSTOG00000023166) #15	GFY (ENSSTOG00000032262) #16	SLC17A7 (ENSSTOG00000014610) #17	PIH1D1 (ENSSTOG00000025836) #18	ALDH16A1 (ENSSTOG00000014893) #19	FLT3LG (ENSSTOG00000033194) #20	ENSSTOG00000021558 ##21	RPS11 (ENSSTOG00000023443) #22	FCGRT (ENSSTOG00000014628) #23	RCN3 (ENSSTOG00000014632) #24	NOSIP (ENSSTOG00000014638) #25	PRRG2 (ENSSTOG00000014274) #26	PRR12 (ENSSTOG00000025104) #27	RRAS (ENSSTOG00000001860) #28	SCAF1 (ENSSTOG00000019495) #29	IRF3 (ENSSTOG00000022900) #31	BCL2L12 (ENSSTOG00000005394) #32	PRMT1 (ENSSTOG00000025543) #33	CPT1C (ENSSTOG00000015267) #34	TSKS (ENSSTOG00000009763) #35	AP2A1 (ENSSTOG00000012743) #36	FUZ (ENSSTOG00000031126) #37	MED25 (ENSSTOG00000012769)
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	3	ENSSVLG00005015789	ENSSVLG00005015831	FBXO28 (ENSSVLG00005015889)	TP53BP2 (ENSSVLG00005015950)	CAPN2 (ENSSVLG00005016131)	CAPN8 (ENSSVLG00005016359)	CCDC185 (ENSSVLG00005016646)	SUSD4 (ENSSVLG00005016664)	ENSSVLG00005016801	TLR5 (ENSSVLG00005016843)	DISP1 (ENSSVLG00005016863)	FAM177B (ENSSVLG00005016899)	ENSSVLG00005017010	ENSSVLG00005017467	ENSSVLG00005017706	ENSSVLG00005017761 #22	ENSSVLG00005017780	MIA3 (ENSSVLG00005017865)	ENSSVLG00005018144	TAF1A (ENSSVLG00005018206)	HHIPL2 (ENSSVLG00005018294)	ENSSVLG00005018388	ENSSVLG00005018405	DUSP10 (ENSSVLG00005018430)	HLX (ENSSVLG00005018486)	MTARC1 (ENSSVLG00005018516)	MTARC2 (ENSSVLG00005018561)	C1orf115 (ENSSVLG00005018598)	MARK1 (ENSSVLG00005018649)	RAB3GAP2 (ENSSVLG00005018763)	IARS2 (ENSSVLG00005019124)
Eurasian red squirrel	MODERN SPECIES	8	ENSSVLG00005018058 #9	ENSSVLG00005018154	SLC6A16 (ENSSVLG00005018304) #10	ENSSVLG00005018435	CD37 (ENSSVLG00005018472) #11	ENSSVLG00005018761 #12	DKKL1 (ENSSVLG00005019174) #13	KASH5 (ENSSVLG00005019324) #14	PTH2 (ENSSVLG00005019434) #15	GFY (ENSSVLG00005019482) #16	SLC17A7 (ENSSVLG00005019609) #17	PIH1D1 (ENSSVLG00005019780) #18	ALDH16A1 (ENSSVLG00005019893) #19	FLT3LG (ENSSVLG00005020373) #20	ENSSVLG00005020410 #21	ENSSVLG00005020539 #22	FCGRT (ENSSVLG00005020604) #23	RCN3 (ENSSVLG00005020707) #24	NOSIP (ENSSVLG00005020742) #25	PRRG2 (ENSSVLG00005020778) #26	ENSSVLG00005020873 #27	ENSSVLG00005020892 #27	RRAS (ENSSVLG00005020957) #28	SCAF1 (ENSSVLG00005020993) #29	IRF3 (ENSSVLG00005021057) #31	ENSSVLG00005021344 #32	PRMT1 (ENSSVLG00005021460) #33	CPT1C (ENSSVLG00005021628) #34	TSKS (ENSSVLG00005021672) #35	AP2A1 (ENSSVLG00005021771) #36	ENSSVLG00005021820 #37
Hystricomorpha	ANCESTRAL SPECIES	2	ENSGT01050000244900.a.b	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.a.e.a #21	ENSGT00390000002732.n.`b #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT01100000267133	ENSGT00390000010727 #37
Naked mole-rat female	MODERN SPECIES	21	ENSHGLG00000033555	ENSHGLG00000031915	LIN7B (ENSHGLG00000005712)	ENSHGLG00000004741	ENSHGLG00000012825	SLC6A16 (ENSHGLG00000011131) #10	CD37 (ENSHGLG00000009184) #11	TEAD2 (ENSHGLG00000008688) #12	DKKL1 (ENSHGLG00000012104) #13	ENSHGLG00000010212 #14	PTH2 (ENSHGLG00000009333) #15	SLC17A7 (ENSHGLG00000011238) #17	ALDH16A1 (ENSHGLG00000010891) #19	FLT3LG (ENSHGLG00000007895) #20	ENSHGLG00000010070 #21	RPS11 (ENSHGLG00000040635) #22	FCGRT (ENSHGLG00000040787) #23	RCN3 (ENSHGLG00000048489) #24	ENSHGLG00000046891 #25	ENSHGLG00000043624	ENSHGLG00000011479 #18	ENSHGLG00000043111 #28	ENSHGLG00000038097 #29	IRF3 (ENSHGLG00000009400) #31	BCL2L12 (ENSHGLG00000008378) #32	PRMT1 (ENSHGLG00000006326) #33	ENSHGLG00000041739	ENSHGLG00000032781	ENSHGLG00000047510 #34	TSKS (ENSHGLG00000005186) #35	ENSHGLG00000050426 #36
Hystricomorpha_a	ANCESTRAL SPECIES	33	ENSGT00940000153222.a.b.a	ENSGT01050000244900.a.b	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.a.f #21	ENSGT00390000002732.n.`b #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37	ENSGT00940000160439
Guinea pig	MODERN SPECIES	70	SNRNP70 (ENSCPOG00000019589)	LIN7B (ENSCPOG00000002461)	PPFIA3 (ENSCPOG00000003554)	HRC (ENSCPOG00000003564) #7	TRPM4 (ENSCPOG00000025709) #8	CD37 (ENSCPOG00000023237) #11	TEAD2 (ENSCPOG00000011572) #12	DKKL1 (ENSCPOG00000023360) #13	KASH5 (ENSCPOG00000005265) #14	PTH2 (ENSCPOG00000039126) #15	SLC17A7 (ENSCPOG00000006786) #17	PIH1D1 (ENSCPOG00000026119) #18	ALDH16A1 (ENSCPOG00000002850) #19	FLT3LG (ENSCPOG00000022577) #20	ENSCPOG00000012417 #21	RPS11 (ENSCPOG00000015145) #22	FCGRT (ENSCPOG00000025125) #23	RCN3 (ENSCPOG00000003639) #24	NOSIP (ENSCPOG00000011811) #25	PRRG2 (ENSCPOG00000008051) #26	PRR12 (ENSCPOG00000011808) #27	RRAS (ENSCPOG00000033433) #28	SCAF1 (ENSCPOG00000019794) #29	IRF3 (ENSCPOG00000026146) #31	BCL2L12 (ENSCPOG00000005156) #32	PRMT1 (ENSCPOG00000019328) #33	CPT1C (ENSCPOG00000015483) #34	TSKS (ENSCPOG00000005997) #35	AP2A1 (ENSCPOG00000005104) #36	FUZ (ENSCPOG00000005113) #37	MED25 (ENSCPOG00000005117)
Hystricomorpha_b	ANCESTRAL SPECIES	65	ENSGT00940000153222.a.b.a	ENSGT01050000244900.a.b	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.a.f #21	ENSGT00390000002732.n.`b #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37	ENSGT00940000160439
Long-tailed chinchilla	DUPLICATION
Long-tailed chinchilla	MODERN SPECIES	210	ENSCLAG00000001847	BTK (ENSCLAG00000002604)	TIMM8A (ENSCLAG00000002392)	DRP2 (ENSCLAG00000002187)	ENSCLAG00000001830	TMEM35A (ENSCLAG00000002663)	ENSCLAG00000017487	XKRX (ENSCLAG00000002588)	NOX1 (ENSCLAG00000002437)	CSTF2 (ENSCLAG00000001904)	SYTL4 (ENSCLAG00000002223)	SRPX2 (ENSCLAG00000002093)	TSPAN6 (ENSCLAG00000002059)	TNMD (ENSCLAG00000002007)	PCDH19 (ENSCLAG00000001982)	ENSCLAG00000001946 #22	ENSCLAG00000003982	DIAPH2 (ENSCLAG00000003080)	ENSCLAG00000002742
Long-tailed chinchilla	MODERN SPECIES	233			ENSCLAG00000000206	CALHM4 (ENSCLAG00000000213)	TRAPPC3L (ENSCLAG00000000221)	CALHM5 (ENSCLAG00000000210)	DSE (ENSCLAG00000000219)	NT5DC1 (ENSCLAG00000000283)	ENSCLAG00000000565	FRK (ENSCLAG00000000628)	HS3ST5 (ENSCLAG00000000666)	ENSCLAG00000000682	HDAC2 (ENSCLAG00000000749)	ENSCLAG00000000824	ENSCLAG00000017382	ENSCLAG00000000058 #22	ENSCLAG00000000080	LAMA4 (ENSCLAG00000000130)	FAM229B (ENSCLAG00000000365)	TUBE1 (ENSCLAG00000000067)	CCN6 (ENSCLAG00000000109)
Long-tailed chinchilla	MODERN SPECIES	266	SNRNP70 (ENSCLAG00000007991)	LIN7B (ENSCLAG00000007463)	PPFIA3 (ENSCLAG00000006122)	HRC (ENSCLAG00000005840) #7	TRPM4 (ENSCLAG00000006981) #8	CD37 (ENSCLAG00000006408) #11	TEAD2 (ENSCLAG00000006081) #12	DKKL1 (ENSCLAG00000005952) #13	PTH2 (ENSCLAG00000005627) #15	GFY (ENSCLAG00000005274) #16	SLC17A7 (ENSCLAG00000004681) #17	PIH1D1 (ENSCLAG00000004603) #18	ALDH16A1 (ENSCLAG00000004135) #19	FLT3LG (ENSCLAG00000003815) #20	ENSCLAG00000012323 #21	RPS11 (ENSCLAG00000011518) #22	FCGRT (ENSCLAG00000008478) #23	RCN3 (ENSCLAG00000008137) #24	NOSIP (ENSCLAG00000007784) #25	PRRG2 (ENSCLAG00000007479) #26	PRR12 (ENSCLAG00000007194) #27	RRAS (ENSCLAG00000004920) #28	ENSCLAG00000004727 #29	IRF3 (ENSCLAG00000004576) #31	BCL2L12 (ENSCLAG00000004288) #32	PRMT1 (ENSCLAG00000003806) #33	ENSCLAG00000006977 #34	TSKS (ENSCLAG00000006760) #35	AP2A1 (ENSCLAG00000010607) #36	FUZ (ENSCLAG00000016293) #37	MED25 (ENSCLAG00000009793)
Degu	DUPLICATION
Degu	MODERN SPECIES	273														ENSODEG00000001662	BCOR (ENSODEG00000001651)	ENSODEG00000001626 #22	ENSODEG00000001615	CXorf38 (ENSODEG00000001590)	MED14 (ENSODEG00000001567)	ENSODEG00000001539	ENSODEG00000001529	ENSODEG00000001518	ENSODEG00000018682	USP9X (ENSODEG00000001431)	ENSODEG00000001355	NYX (ENSODEG00000001332)	GPR34 (ENSODEG00000018828)	GPR82 (ENSODEG00000002230)	CASK (ENSODEG00000002069)
Degu	MODERN SPECIES	78	ENSODEG00000012514	ENSODEG00000010269	ENSODEG00000019801	SCRT2 (ENSODEG00000011872)	SRXN1 (ENSODEG00000011193)	TCF15 (ENSODEG00000010643)	ENSODEG00000019802	ENSODEG00000011479	TBC1D20 (ENSODEG00000010895)	RBCK1 (ENSODEG00000010172)	TRIB3 (ENSODEG00000010963)	NRSN2 (ENSODEG00000011631)	SOX12 (ENSODEG00000020040)	ZCCHC3 (ENSODEG00000010730)	C20orf96 (ENSODEG00000011348)	ENSODEG00000019969 #22	DEFB128 (ENSODEG00000014590)	ENSODEG00000012325	DEFB119 (ENSODEG00000011255)	ENSODEG00000012410	DEFB123 (ENSODEG00000011781)	ENSODEG00000010872	DEFB124 (ENSODEG00000011947)	REM1 (ENSODEG00000012458)	ENSODEG00000011012	HM13 (ENSODEG00000012125)	MCTS2 (ENSODEG00000011493)	ID1 (ENSODEG00000012592)	COX4I2 (ENSODEG00000012477)	ENSODEG00000019781	BCL2L1 (ENSODEG00000011428)
Degu	MODERN SPECIES	76	ENSODEG00000014737	AUTS2 (ENSODEG00000016622)	ENSODEG00000020191	GALNT17 (ENSODEG00000016292)	CALN1 (ENSODEG00000015050)	ENSODEG00000014729	ENSODEG00000015687	ENSODEG00000016093	RABGEF1 (ENSODEG00000015206)	KCTD7 (ENSODEG00000014785)	TPST1 (ENSODEG00000015532)	ENSODEG00000014255	ASL (ENSODEG00000014371)	GUSB (ENSODEG00000014869)	ENSODEG00000014101	ENSODEG00000020198 #22	ENSODEG00000014564	PHKG1 (ENSODEG00000014159)	ENSODEG00000014693	PSPH (ENSODEG00000014742)	NIPSNAP2 (ENSODEG00000014015)	ENSODEG00000015145	SEPTIN14 (ENSODEG00000014211)	ENSODEG00000020219	MRPS24 (ENSODEG00000016539)	URGCP (ENSODEG00000015352)	DBNL (ENSODEG00000014896)	PGAM2 (ENSODEG00000014343)	POLM (ENSODEG00000015087)	AEBP1 (ENSODEG00000015327)	POLD2 (ENSODEG00000014406)
Degu	MODERN SPECIES	309	PPFIA3 (ENSODEG00000017094)	HRC (ENSODEG00000017081) #7	TRPM4 (ENSODEG00000017093) #8	CD37 (ENSODEG00000017043) #11	ENSODEG00000020399	ENSODEG00000017031 #12	DKKL1 (ENSODEG00000016882) #13	KASH5 (ENSODEG00000017104) #14	PTH2 (ENSODEG00000017092) #15	GFY (ENSODEG00000017469) #16	SLC17A7 (ENSODEG00000017136) #17	PIH1D1 (ENSODEG00000017073) #18	ALDH16A1 (ENSODEG00000016912) #19	ENSODEG00000017084 #20	ENSODEG00000016831 #21	ENSODEG00000016970 #22	FCGRT (ENSODEG00000017231) #23	RCN3 (ENSODEG00000016858) #24	NOSIP (ENSODEG00000016859) #25	PRRG2 (ENSODEG00000016952) #26	PRR12 (ENSODEG00000016863) #27	RRAS (ENSODEG00000016763) #28	SCAF1 (ENSODEG00000017762) #29	IRF3 (ENSODEG00000017008) #31	BCL2L12 (ENSODEG00000016838) #32	ENSODEG00000016694 #33	CPT1C (ENSODEG00000017021) #34	TSKS (ENSODEG00000017089) #35	AP2A1 (ENSODEG00000016865) #36	FUZ (ENSODEG00000016367) #37	ENSODEG00000017065
Rodentia_B	ANCESTRAL SPECIES	34	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.v ##21	ENSGT00390000002732.n.`b #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37	ENSGT00940000160439
Kangaroo rat	MODERN SPECIES	424	Lin7b (ENSDORG00000010225)	Ppfia3 (ENSDORG00000008397)	ENSDORG00000029876 #7	Trpm4 (ENSDORG00000010697) #8	ENSDORG00000028308 #9	Cd37 (ENSDORG00000028018) #11	ENSDORG00000010207 #12	Dkkl1 (ENSDORG00000013582) #13	Kash5 (ENSDORG00000013586) #14	Pth2 (ENSDORG00000013590) #15	ENSDORG00000028515 #16	Slc17a7 (ENSDORG00000013592) #17	Pih1d1 (ENSDORG00000013596) #18	Aldh16a1 (ENSDORG00000013597) #19	Rpl13a (ENSDORG00000012194) ##21	ENSDORG00000012195 #22	Rcn3 (ENSDORG00000012197) #24	ENSDORG00000001351 #25	Prrg2 (ENSDORG00000000079) #26	Prr12 (ENSDORG00000014917) #27	Rras (ENSDORG00000014918) #28	Scaf1 (ENSDORG00000014919) #29	Irf3 (ENSDORG00000014920) #31	Bcl2l12 (ENSDORG00000014921) #32	Prmt1 (ENSDORG00000014923) #33	ENSDORG00000014925 #34	ENSDORG00000027048 #34	Tsks (ENSDORG00000014926) #35	Ap2a1 (ENSDORG00000014931) #36	Fuz (ENSDORG00000014940) #37	ENSDORG00000027418
Myomorpha	ANCESTRAL SPECIES	39	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.v ##21	ENSGT00390000002732.n.`b #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37	ENSGT00940000160439
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	42	ENSJJAG00000005687	Kitl (ENSJJAG00000021051)	Tmtc3 (ENSJJAG00000013597)	Cep290 (ENSJJAG00000002440)	4930430F08Rik (ENSJJAG00000013569)	1700017N19Rik (ENSJJAG00000023823)	Mgat4c (ENSJJAG00000021989)	Nts (ENSJJAG00000014653)	Rassf9 (ENSJJAG00000013251)	ENSJJAG00000002806	Alx1 (ENSJJAG00000006817)	Slc6a15 (ENSJJAG00000006373)	Tmtc2 (ENSJJAG00000016641)	Mettl25 (ENSJJAG00000023860)	Ccdc59 (ENSJJAG00000015263)	ENSJJAG00000003779 #22	Ppfia2 (ENSJJAG00000006298)	Acss3 (ENSJJAG00000008308)	Lin7a (ENSJJAG00000023503)	Myf5 (ENSJJAG00000003407)	Myf6 (ENSJJAG00000011250)	Ptprq (ENSJJAG00000017741)	Otogl (ENSJJAG00000019493)	Ppp1r12a (ENSJJAG00000023796)	Pawr (ENSJJAG00000018666)	Syt1 (ENSJJAG00000023399)	ENSJJAG00000022372	Nav3 (ENSJJAG00000012332)	ENSJJAG00000010552	E2f7 (ENSJJAG00000007878)	ENSJJAG00000005723
Lesser Egyptian jerboa	MODERN SPECIES	214	Slc41a3 (ENSJJAG00000013462)	Iqsec1 (ENSJJAG00000015042)	Nup210 (ENSJJAG00000017557)	Hdac11 (ENSJJAG00000013601)	Fbln2 (ENSJJAG00000014814)	Wnt7a (ENSJJAG00000015421)	Vmn1r54 (ENSJJAG00000015738)	ENSJJAG00000015764	ENSJJAG00000016008	Tmem43 (ENSJJAG00000016739)	Xpc (ENSJJAG00000017201)	Lsm3 (ENSJJAG00000017351)	Slc6a6 (ENSJJAG00000017759)	Grip2 (ENSJJAG00000018619)	ENSJJAG00000020269	ENSJJAG00000020662 #22	Slc4a7 (ENSJJAG00000021063)
Lesser Egyptian jerboa	MODERN SPECIES	228	ENSJJAG00000015650 #7	Trpm4 (ENSJJAG00000013013) #8	Slc6a21 (ENSJJAG00000010422) #9	Cd37 (ENSJJAG00000009318) #11	ENSJJAG00000006911 #12	ENSJJAG00000005122 #12	Dkkl1 (ENSJJAG00000003941) #13	Kash5 (ENSJJAG00000001333) #14	Pth2 (ENSJJAG00000008910) #15	Gfy (ENSJJAG00000007780) #16	Slc17a7 (ENSJJAG00000003062) #17	Pih1d1 (ENSJJAG00000024001) #18	Aldh16a1 (ENSJJAG00000015970) #19	ENSJJAG00000011073 #20	Rpl13a (ENSJJAG00000000343) ##21	Rps11 (ENSJJAG00000021986) #22	Fcgrt (ENSJJAG00000023789) #23	Rcn3 (ENSJJAG00000023309) #24	ENSJJAG00000023221 #25	Prrg2 (ENSJJAG00000020611) #26	Prr12 (ENSJJAG00000003240) #27	Rras (ENSJJAG00000000707) #28	Scaf1 (ENSJJAG00000020045) #29	ENSJJAG00000018742 #31	Bcl2l12 (ENSJJAG00000017216) #32	Prmt1 (ENSJJAG00000018374) #33	Cpt1c (ENSJJAG00000009112) #34	Tsks (ENSJJAG00000004998) #35	Ap2a1 (ENSJJAG00000024079) #36	Fuz (ENSJJAG00000021197) #37	ENSJJAG00000018751
Muroidea	ANCESTRAL SPECIES	41	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.v ##21	ENSGT00390000002732.n.`b #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37	ENSGT00940000160439
Muroidea_A	ANCESTRAL SPECIES		ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.v ##21	ENSGT00390000002732.n.`b #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37	ENSGT00960000192808
Cricetidae	ANCESTRAL SPECIES	28	ENSGT01050000244900.a.b	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.v ##21	ENSGT00390000002732.n.`b #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37	ENSGT00960000192808
Cricetidae_B	ANCESTRAL SPECIES	31	ENSGT01050000244900.a.b	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.v ##21	ENSGT00390000002732.n.`b #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37	ENSGT00960000192808
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	12	Ebag9 (ENSPEMG00000008118)	Pkhd1l1 (ENSPEMG00000021231)	ENSPEMG00000025458	Eny2 (ENSPEMG00000022758)	Nudcd1 (ENSPEMG00000005927)	Trhr (ENSPEMG00000020401)	Tmem74 (ENSPEMG00000028243)	ENSPEMG00000030818	ENSPEMG00000029407	Emc2 (ENSPEMG00000020515)	Eif3e (ENSPEMG00000008528)	Rspo2 (ENSPEMG00000024367)	Angpt1 (ENSPEMG00000013024)	Abra (ENSPEMG00000020836)	Oxr1 (ENSPEMG00000028644)	ENSPEMG00000025732 #22	Zfpm2 (ENSPEMG00000008866)	ENSPEMG00000026853	Lrp12 (ENSPEMG00000008441)	Dpys (ENSPEMG00000019656)	Dcstamp (ENSPEMG00000007166)	Rims2 (ENSPEMG00000019463)	Dcaf13 (ENSPEMG00000011958)	Slc25a32 (ENSPEMG00000000366)	Cthrc1 (ENSPEMG00000016828)	Fzd6 (ENSPEMG00000021530)	Atp6v1c1 (ENSPEMG00000020452)	Azin1 (ENSPEMG00000021239)	Klf10 (ENSPEMG00000007722)	ENSPEMG00000025191	Odf1 (ENSPEMG00000023346)
Northern American deer mouse	MODERN SPECIES	18	Tmem170 (ENSPEMG00000027661)	Chst5 (ENSPEMG00000001162)	Tmem231 (ENSPEMG00000015338)	ENSPEMG00000029312	Adat1 (ENSPEMG00000013185)	Kars (ENSPEMG00000012277)	Terf2ip (ENSPEMG00000004753)	Cntnap4 (ENSPEMG00000012271)	Mon1b (ENSPEMG00000010449)	Syce1l (ENSPEMG00000007573)	Adamts18 (ENSPEMG00000017721)	Nudt7 (ENSPEMG00000015550)	Vat1l (ENSPEMG00000015665)	Clec3a (ENSPEMG00000031227)	Wwox (ENSPEMG00000016944)	ENSPEMG00000030824 #22	Maf (ENSPEMG00000019355)	Dynlrb2 (ENSPEMG00000019948)	Cdyl2 (ENSPEMG00000019625)	ENSPEMG00000020157	Cenpn (ENSPEMG00000002034)	Atmin (ENSPEMG00000019534)	ENSPEMG00000011494	1700030J22Rik (ENSPEMG00000014171)	Gcsh (ENSPEMG00000019328)	Pkd1l2 (ENSPEMG00000019583)	Bco1 (ENSPEMG00000020066)	Gan (ENSPEMG00000020147)	Cmip (ENSPEMG00000019741)	Plcg2 (ENSPEMG00000018570)	Sdr42e1 (ENSPEMG00000029375)
Northern American deer mouse	MODERN SPECIES	458																ENSPEMG00000013353 #22
Northern American deer mouse	MODERN SPECIES		Lin7b (ENSPEMG00000004601)	Ppfia3 (ENSPEMG00000012202)	Hrc (ENSPEMG00000029397) #7	Trpm4 (ENSPEMG00000007526) #8	ENSPEMG00000012881 #9	Cd37 (ENSPEMG00000014152) #11	Tead2 (ENSPEMG00000011577) #12	Dkkl1 (ENSPEMG00000018460) #13	Pth2 (ENSPEMG00000026468) #15	Gfy (ENSPEMG00000013608) #16	Slc17a7 (ENSPEMG00000018918) #17	Pih1d1 (ENSPEMG00000011439) #18	Aldh16a1 (ENSPEMG00000004925) #19	Flt3l (ENSPEMG00000012798) #20	Rpl13a (ENSPEMG00000009221) ##21	Rps11 (ENSPEMG00000015976) #22	Fcgrt (ENSPEMG00000010129) #23	Rcn3 (ENSPEMG00000015947) #24	Nosip (ENSPEMG00000011136) #25	Prrg2 (ENSPEMG00000001303) #26	Prr12 (ENSPEMG00000010751) #27	Rras (ENSPEMG00000017709) #28	Scaf1 (ENSPEMG00000013288) #29	Irf3 (ENSPEMG00000010948) #31	Bcl2l12 (ENSPEMG00000017405) #32	Prmt1 (ENSPEMG00000014287) #33	Cpt1c (ENSPEMG00000013161) #34	Tsks (ENSPEMG00000012885) #35	Ap2a1 (ENSPEMG00000013224) #36	Fuz (ENSPEMG00000006496) #37	ENSPEMG00000024339
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	163	Slc7a8 (ENSMOCG00000017595)	Homez (ENSMOCG00000012834)	Ppp1r3e (ENSMOCG00000018607)	ENSMOCG00000018557	Slc22a17 (ENSMOCG00000021722)	Efs (ENSMOCG00000002012)	Il25 (ENSMOCG00000006767)	Cmtm5 (ENSMOCG00000001040)	Myh6 (ENSMOCG00000013782)	Myh7 (ENSMOCG00000014763)	Ngdn (ENSMOCG00000021605)	Zfhx2 (ENSMOCG00000017802)	Thtpa (ENSMOCG00000000100)	Ap1g2 (ENSMOCG00000018293) ##36	Jph4 (ENSMOCG00000013717)	ENSMOCG00000016373 #22	Dhrs2 (ENSMOCG00000002449)	ENSMOCG00000022329	Carmil3 (ENSMOCG00000005088)	Cpne6 (ENSMOCG00000021526)	Nrl (ENSMOCG00000007332)	Pck2 (ENSMOCG00000011432)	Fitm1 (ENSMOCG00000014601)	ENSMOCG00000007640	Emc9 (ENSMOCG00000001974)	ENSMOCG00000013234	Rnf31 (ENSMOCG00000016561)	Irf9 (ENSMOCG00000005971)	Rec8 (ENSMOCG00000008584)	Ipo4 (ENSMOCG00000020462)	Tm9sf1 (ENSMOCG00000014908)
Prairie vole	MODERN SPECIES	97	Lin7b (ENSMOCG00000016722)	Ppfia3 (ENSMOCG00000002812)	ENSMOCG00000015224 #7	Trpm4 (ENSMOCG00000019009) #8	Cd37 (ENSMOCG00000000849) #11	ENSMOCG00000012050 #12	Dkkl1 (ENSMOCG00000010393) #13	Kash5 (ENSMOCG00000009932) #14	Pth2 (ENSMOCG00000003262) #15	Gfy (ENSMOCG00000006947) #16	Slc17a7 (ENSMOCG00000008964) #17	Pih1d1 (ENSMOCG00000017144) #18	Aldh16a1 (ENSMOCG00000005158) #19	Flt3l (ENSMOCG00000010342) #20	ENSMOCG00000002774 ##21	Rps11 (ENSMOCG00000014469) #22	Fcgrt (ENSMOCG00000017574) #23	Rcn3 (ENSMOCG00000000557) #24	ENSMOCG00000002542 #25	Prrg2 (ENSMOCG00000003675) #26	Prr12 (ENSMOCG00000018369) #27	Rras (ENSMOCG00000002251) #28	Scaf1 (ENSMOCG00000012474) #29	Irf3 (ENSMOCG00000013920) #31	Bcl2l12 (ENSMOCG00000022863) #32	ENSMOCG00000004064 #33	Cpt1c (ENSMOCG00000001831) #34	Tsks (ENSMOCG00000012880) #35	Ap2a1 (ENSMOCG00000007825) #36	Fuz (ENSMOCG00000003081) #37	Med25 (ENSMOCG00000006863)
Cricetinae	ANCESTRAL SPECIES	33	ENSGT01050000244900.a.b	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.v ##21	ENSGT00390000002732.n.`b #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37	ENSGT00940000160439
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	121	Ogdh (ENSCGRG00001018679)	Zmiz2 (ENSCGRG00001000371)	PPIA (ENSCGRG00001013904)	H2az2 (ENSCGRG00001004602)	Purb (ENSCGRG00001000874)	Myo1g (ENSCGRG00001017997)	Ccm2 (ENSCGRG00001010117)	Nacad (ENSCGRG00001013416)	Tbrg4 (ENSCGRG00001020595)	Wap (ENSCGRG00001019924)	Ramp3 (ENSCGRG00001000830)	Adcy1 (ENSCGRG00001013356)	Ccdc201 (ENSCGRG00001022774)	Igfbp1 (ENSCGRG00001009922)	Igfbp3 (ENSCGRG00001016878)	ENSCGRG00001010027 #22	ENSCGRG00001000648	Tns3 (ENSCGRG00001013727)	Pkd1l1 (ENSCGRG00001021143)	Hus1 (ENSCGRG00001016677)	Sun3 (ENSCGRG00001025047)	Gm11992 (ENSCGRG00001001888)	Upp1 (ENSCGRG00001009551)	Abca13 (ENSCGRG00001018005)	ENSCGRG00001015573	Vwc2 (ENSCGRG00001016858)	Zpbp (ENSCGRG00001019295)	Spata48 (ENSCGRG00001004222)	Ikzf1 (ENSCGRG00001015985)	Fignl1 (ENSCGRG00001005568)	Ddc (ENSCGRG00001020321)
Chinese hamster chok1gshd	MODERN SPECIES	271	Ppfia3 (ENSCGRG00001013785)	ENSCGRG00001018520 #7	Trpm4 (ENSCGRG00001021970) #8	Slc6a21 (ENSCGRG00001013493) #9	Cd37 (ENSCGRG00001017160) #11	Tead2 (ENSCGRG00001020731) #12	Dkkl1 (ENSCGRG00001023677) #13	Kash5 (ENSCGRG00001015515) #14	Pth2 (ENSCGRG00001021030) #15	Gfy (ENSCGRG00001000062) #16	Slc17a7 (ENSCGRG00001007021) #17	Pih1d1 (ENSCGRG00001013397) #18	Aldh16a1 (ENSCGRG00001016532) #19	Flt3l (ENSCGRG00001017445) #20	ENSCGRG00001018651 ##21	Rps11 (ENSCGRG00001023575) #22	Fcgrt (ENSCGRG00001000744) #23	Rcn3 (ENSCGRG00001003964) #24	Nosip (ENSCGRG00001013092) #25	Prrg2 (ENSCGRG00001014643) #26	Prr12 (ENSCGRG00001016597) #27	Rras (ENSCGRG00001019817) #28	Scaf1 (ENSCGRG00001021428) #29	Irf3 (ENSCGRG00001000404) #31	Bcl2l12 (ENSCGRG00001008963) #32	Prmt1 (ENSCGRG00001018188) #33	Cpt1c (ENSCGRG00001015931) #34	ENSCGRG00001019632	ENSCGRG00001022440 #35	Ap2a1 (ENSCGRG00001004014) #36	ENSCGRG00001002717
Golden Hamster	DUPLICATION
Golden Hamster	MODERN SPECIES	120															ENSMAUG00000016402 ##21	ENSMAUG00000012416 #22
Golden Hamster	MODERN SPECIES	643	Shq1 (ENSMAUG00000022030)	ENSMAUG00000010991	Rybp (ENSMAUG00000010834)	Prok2 (ENSMAUG00000007849)	Gpr27 (ENSMAUG00000010831)	Eif4e3 (ENSMAUG00000019824)	Foxp1 (ENSMAUG00000022171)	Mdfic2 (ENSMAUG00000012915)	Mitf (ENSMAUG00000004545)	Frmd4b (ENSMAUG00000007225)	Lmod3 (ENSMAUG00000010204)	Arl6ip5 (ENSMAUG00000009657)	Uba3 (ENSMAUG00000017525)	Tmf1 (ENSMAUG00000021427)	Eogt (ENSMAUG00000017534)	ENSMAUG00000020979 #22	Tafa4 (ENSMAUG00000019968)	Tafa1 (ENSMAUG00000019067)	Suclg2 (ENSMAUG00000021321)	ENSMAUG00000009672	Kbtbd8 (ENSMAUG00000017081)	Lrig1 (ENSMAUG00000007470)	Slc25a26 (ENSMAUG00000021604)	ENSMAUG00000004998	Magi1 (ENSMAUG00000021226)	ENSMAUG00000010107	Adamts9 (ENSMAUG00000021440)	Prickle2 (ENSMAUG00000013569)	Trh (ENSMAUG00000016316)	Rbsn (ENSMAUG00000010240)	Nr2c2 (ENSMAUG00000016840)
Golden Hamster	DUPLICATION
Golden Hamster	DUPLICATION
Golden Hamster	MODERN SPECIES	811	Ppp1r3e (ENSMAUG00000012375)	ENSMAUG00000007383	Slc22a17 (ENSMAUG00000012724)	Efs (ENSMAUG00000009729)	Il25 (ENSMAUG00000016858)	Cmtm5 (ENSMAUG00000020256)	Myh6 (ENSMAUG00000010999)	Myh7 (ENSMAUG00000011363)	Ngdn (ENSMAUG00000011909)	Thtpa (ENSMAUG00000021239)	Zfhx2 (ENSMAUG00000020668)	Ap1g2 (ENSMAUG00000009342) ##36	ENSMAUG00000004020 ##36	Jph4 (ENSMAUG00000022115)	ENSMAUG00000004321	ENSMAUG00000004149 #22	Dhrs4 (ENSMAUG00000013418)	Carmil3 (ENSMAUG00000022089)	Cpne6 (ENSMAUG00000020335)	Nrl (ENSMAUG00000011630)	Pck2 (ENSMAUG00000013705)	Dcaf11 (ENSMAUG00000007770)	Fitm1 (ENSMAUG00000011840)	Psme1 (ENSMAUG00000015111)	Emc9 (ENSMAUG00000015414)	ENSMAUG00000015092	Rnf31 (ENSMAUG00000017984)	Irf9 (ENSMAUG00000020370)	Rec8 (ENSMAUG00000019355)	Ipo4 (ENSMAUG00000017565)	Tm9sf1 (ENSMAUG00000011062)
Golden Hamster	MODERN SPECIES	781	Galnt11 (ENSMAUG00000014251)	ENSMAUG00000012286	ENSMAUG00000009446	ENSMAUG00000012568	Actr3b (ENSMAUG00000009519)	Dpp6 (ENSMAUG00000007340)	Paxip1 (ENSMAUG00000003325)	Htr5a (ENSMAUG00000001772)	Insig1 (ENSMAUG00000000814)	En2 (ENSMAUG00000018311)	ENSMAUG00000000075	Rbm33 (ENSMAUG00000017332)	Shh (ENSMAUG00000016493)	Rnf32 (ENSMAUG00000000042)	Lmbr1 (ENSMAUG00000015566)	ENSMAUG00000014867 #22	Nom1 (ENSMAUG00000017988)	Mnx1 (ENSMAUG00000016323)	Ube3c (ENSMAUG00000014156)
Golden Hamster	MODERN SPECIES	619	Ctnna1 (ENSMAUG00000020855)	Sil1 (ENSMAUG00000017543)	Matr3 (ENSMAUG00000011647)	Paip2 (ENSMAUG00000011522)	Slc23a1 (ENSMAUG00000020803)	Mzb1 (ENSMAUG00000015331)	Prob1 (ENSMAUG00000000382)	Spata24 (ENSMAUG00000019828)	Dnajc18 (ENSMAUG00000001327)	Ecscr (ENSMAUG00000021134)	Smim33 (ENSMAUG00000008798)	Sting1 (ENSMAUG00000019161)	Ube2d2a (ENSMAUG00000009230)	Cxxc5 (ENSMAUG00000015581)	Psd2 (ENSMAUG00000016332)	ENSMAUG00000015369 #22	ENSMAUG00000010710	Pura (ENSMAUG00000011024)	Igip (ENSMAUG00000006054)	Cystm1 (ENSMAUG00000020526)	ENSMAUG00000010575	ENSMAUG00000009444	Hbegf (ENSMAUG00000001210)	Slc4a9 (ENSMAUG00000018095)
Murinae	ANCESTRAL SPECIES		ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.v ##21	ENSGT00390000002732.n.`b #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37	ENSGT00960000192808
Mus	ANCESTRAL SPECIES		ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.v ##21	ENSGT00390000002732.n.`b #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37	ENSGT00960000192808
Shrew mouse	MODERN SPECIES		Ppfia3 (MGP_PahariEiJ_G0012937)	Hrc (MGP_PahariEiJ_G0012936) #7	Trpm4 (MGP_PahariEiJ_G0012935) #8	Slc6a21 (MGP_PahariEiJ_G0012934) #9	Cd37 (MGP_PahariEiJ_G0012933) #11	Tead2 (MGP_PahariEiJ_G0012932) #12	Dkkl1 (MGP_PahariEiJ_G0012931) #13	Kash5 (MGP_PahariEiJ_G0012930) #14	Pth2 (MGP_PahariEiJ_G0012929) #15	Gfy (MGP_PahariEiJ_G0012928) #16	Slc17a7 (MGP_PahariEiJ_G0012927) #17	Pih1d1 (MGP_PahariEiJ_G0012926) #18	Aldh16a1 (MGP_PahariEiJ_G0012925) #19	MGP_PahariEiJ_G0012924 #20	Rpl13a (MGP_PahariEiJ_G0012923) ##21	Rps11 (MGP_PahariEiJ_G0012922) #22	Fcgrt (MGP_PahariEiJ_G0012921) #23	Rcn3 (MGP_PahariEiJ_G0012920) #24	Nosip (MGP_PahariEiJ_G0012919) #25	Prrg2 (MGP_PahariEiJ_G0012918) #26	Prr12 (MGP_PahariEiJ_G0012917) #27	Rras (MGP_PahariEiJ_G0012916) #28	Scaf1 (MGP_PahariEiJ_G0012915) #29	Irf3 (MGP_PahariEiJ_G0012914) #31	Bcl2l12 (MGP_PahariEiJ_G0012913) #32	MGP_PahariEiJ_G0012912 #33	MGP_PahariEiJ_G0012911 #33	Cpt1c (MGP_PahariEiJ_G0012910) #34	Tsks (MGP_PahariEiJ_G0012909) #35	Ap2a1 (MGP_PahariEiJ_G0012908) #36	Fuz (MGP_PahariEiJ_G0012907) #37
Mus_A	ANCESTRAL SPECIES	1	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.v ##21	ENSGT00390000002732.n.`b #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37	ENSGT00960000192808
Ryukyu mouse	MODERN SPECIES	16	Ppfia3 (MGP_CAROLIEiJ_G0029712)	Hrc (MGP_CAROLIEiJ_G0029711) #7	Trpm4 (MGP_CAROLIEiJ_G0029710) #8	Slc6a21 (MGP_CAROLIEiJ_G0029709) #9	Cd37 (MGP_CAROLIEiJ_G0029708) #11	Tead2 (MGP_CAROLIEiJ_G0029707) #12	Dkkl1 (MGP_CAROLIEiJ_G0029706) #13	Kash5 (MGP_CAROLIEiJ_G0029705) #14	Pth2 (MGP_CAROLIEiJ_G0029704) #15	Gfy (MGP_CAROLIEiJ_G0029703) #16	Slc17a7 (MGP_CAROLIEiJ_G0029702) #17	Pih1d1 (MGP_CAROLIEiJ_G0029701) #18	Aldh16a1 (MGP_CAROLIEiJ_G0029700) #19	MGP_CAROLIEiJ_G0029699 #20	Rpl13a (MGP_CAROLIEiJ_G0029698) ##21	Rps11 (MGP_CAROLIEiJ_G0029697) #22	Fcgrt (MGP_CAROLIEiJ_G0029696) #23	Rcn3 (MGP_CAROLIEiJ_G0029695) #24	Nosip (MGP_CAROLIEiJ_G0029694) #25	Prrg2 (MGP_CAROLIEiJ_G0029693) #26	Prr12 (MGP_CAROLIEiJ_G0029692) #27	Rras (MGP_CAROLIEiJ_G0029691) #28	Scaf1 (MGP_CAROLIEiJ_G0029690) #29	Irf3 (MGP_CAROLIEiJ_G0029689) #31	Bcl2l12 (MGP_CAROLIEiJ_G0029688) #32	MGP_CAROLIEiJ_G0029687 #33	MGP_CAROLIEiJ_G0029686 #33	Cpt1c (MGP_CAROLIEiJ_G0029685) #34	Tsks (MGP_CAROLIEiJ_G0029684) #35	Ap2a1 (MGP_CAROLIEiJ_G0029683) #36	Fuz (MGP_CAROLIEiJ_G0029682) #37
Mus_B	ANCESTRAL SPECIES		ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.v.g ##21	ENSGT00390000002732.n.`b #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37	ENSGT00960000192808
Mouse	MODERN SPECIES	16	Trpm4 (ENSMUSG00000038260) #8	Slc6a21 (ENSMUSG00000070568) #9	Slc6a16 (ENSMUSG00000094152) #10	Cd37 (ENSMUSG00000030798) #11	Tead2 (ENSMUSG00000030796) #12	Dkkl1 (ENSMUSG00000030792) #13	Kash5 (ENSMUSG00000038292) #14	Pth2 (ENSMUSG00000038300) #15	Gfy (ENSMUSG00000095276) #16	Slc17a7 (ENSMUSG00000070570) #17	Pih1d1 (ENSMUSG00000003423) #18	Aldh16a1 (ENSMUSG00000007833) #19	Flt3l (ENSMUSG00000110206) #20	Gm45713 (ENSMUSG00000089989)	Rpl13a (ENSMUSG00000074129) ##21	Rps11 (ENSMUSG00000003429) #22	Fcgrt (ENSMUSG00000003420) #23	Rcn3 (ENSMUSG00000019539) #24	Nosip (ENSMUSG00000003421) #25	Prrg2 (ENSMUSG00000007837) #26	Prr12 (ENSMUSG00000046574) #27	Rras (ENSMUSG00000038387) #28	Scaf1 (ENSMUSG00000038406) #29	Irf3 (ENSMUSG00000003184) #31	Bcl2l12 (ENSMUSG00000003190) #32	Prmt1 (ENSMUSG00000109324) #33	Cpt1c (ENSMUSG00000007783) #34	Tsks (ENSMUSG00000059891) #35	Ap2a1 (ENSMUSG00000060279) #36	Fuz (ENSMUSG00000011658) #37	Med25 (ENSMUSG00000002968)
Mus_C	ANCESTRAL SPECIES	13	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.v.g ##21	ENSGT00390000002732.n.`b #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37	ENSGT00960000192808
spretus	MODERN SPECIES	16	Ppfia3 (MGP_SPRETEiJ_G0030810)	Hrc (MGP_SPRETEiJ_G0030809) #7	Trpm4 (MGP_SPRETEiJ_G0030808) #8	Slc6a21 (MGP_SPRETEiJ_G0030807) #9	Cd37 (MGP_SPRETEiJ_G0030806) #11	Tead2 (MGP_SPRETEiJ_G0030805) #12	Dkkl1 (MGP_SPRETEiJ_G0030804) #13	Kash5 (MGP_SPRETEiJ_G0030803) #14	Pth2 (MGP_SPRETEiJ_G0030802) #15	Gfy (MGP_SPRETEiJ_G0030801) #16	Slc17a7 (MGP_SPRETEiJ_G0030800) #17	Pih1d1 (MGP_SPRETEiJ_G0030799) #18	Aldh16a1 (MGP_SPRETEiJ_G0030798) #19	MGP_SPRETEiJ_G0030797 #20	MGP_SPRETEiJ_G0030796 ##21	Rps11 (MGP_SPRETEiJ_G0030795) #22	Fcgrt (MGP_SPRETEiJ_G0030794) #23	Rcn3 (MGP_SPRETEiJ_G0030793) #24	Nosip (MGP_SPRETEiJ_G0030792) #25	Prrg2 (MGP_SPRETEiJ_G0030791) #26	Prr12 (MGP_SPRETEiJ_G0030790) #27	Rras (MGP_SPRETEiJ_G0030789) #28	Scaf1 (MGP_SPRETEiJ_G0030788) #29	Irf3 (MGP_SPRETEiJ_G0030787) #31	Bcl2l12 (MGP_SPRETEiJ_G0030786) #32	MGP_SPRETEiJ_G0030785 #33	MGP_SPRETEiJ_G0030784 #33	Cpt1c (MGP_SPRETEiJ_G0030783) #34	MGP_SPRETEiJ_G0030782 #35	Fuz (MGP_SPRETEiJ_G0030781) #37	Ap2a1 (MGP_SPRETEiJ_G0030780) #36
Steppe mouse	DUPLICATION
Steppe mouse	MODERN SPECIES	2865	Hrc (ENSMSIG00000019742) #7	Trpm4 (ENSMSIG00000019757) #8	Slc6a21 (ENSMSIG00000019811) #9	Slc6a16 (ENSMSIG00000019829) #10	ENSMSIG00000019855 #11	Tead2 (ENSMSIG00000019927) #12	Dkkl1 (ENSMSIG00000019972) #13	Kash5 (ENSMSIG00000020002) #14	ENSMSIG00000020034	Gfy (ENSMSIG00000020053) #16	ENSMSIG00000020069 #17	Pih1d1 (ENSMSIG00000020099) #18	Aldh16a1 (ENSMSIG00000020116) #19	Flt3l (ENSMSIG00000020203) #20	ENSMSIG00000020261 ##21	ENSMSIG00000020310 #22	Fcgrt (ENSMSIG00000020357) #23	Rcn3 (ENSMSIG00000020381) #24	Nosip (ENSMSIG00000020392) #25	Prrg2 (ENSMSIG00000020460) #26	Prr12 (ENSMSIG00000020493) #27	Rras (ENSMSIG00000020541) #28	Scaf1 (ENSMSIG00000020578) #29	Irf3 (ENSMSIG00000020627) #31	Bcl2l12 (ENSMSIG00000020678) #32	Prmt1 (ENSMSIG00000020718) #33	Cpt1c (ENSMSIG00000020889) #34	Tsks (ENSMSIG00000020920) #35	Ap2a1 (ENSMSIG00000020986) #36	Fuz (ENSMSIG00000021162) #37	ENSMSIG00000021217
Steppe mouse	MODERN SPECIES	1210																ENSMSIG00000007106 #22
Rat	DUPLICATION
Rat	MODERN SPECIES	15	Trappc3 (ENSRNOG00000010550)	Col8a2 (ENSRNOG00000010841)	Adprs (ENSRNOG00000010849)	Tekt2 (ENSRNOG00000011033)	Ago3 (ENSRNOG00000034269)	Ago1 (ENSRNOG00000055915)	Ago4 (ENSRNOG00000025596)	Clspn (ENSRNOG00000011332)	RGD1563072 (ENSRNOG00000021609)	Psmb2 (ENSRNOG00000011463)	Tfap2e (ENSRNOG00000027595)	Ncdn (ENSRNOG00000011751)	LOC100294508 (ENSRNOG00000012204)	Zmym4 (ENSRNOG00000012397)	AABR07049918.1 (ENSRNOG00000029310)	ENSRNOG00000062954 #22	Rpl37a-ps1 (ENSRNOG00000066117)	Sfpq (ENSRNOG00000058461)	Zmym1 (ENSRNOG00000013855)	Zmym6 (ENSRNOG00000013865)	Tmem35b (ENSRNOG00000028083)	Dlgap3 (ENSRNOG00000014302)	Smim12 (ENSRNOG00000014352)	Gja4 (ENSRNOG00000014357)	ENSRNOG00000067866	Gjb3 (ENSRNOG00000014372)	Gjb4 (ENSRNOG00000026910)	Gjb5 (ENSRNOG00000059897)	LOC682102 (ENSRNOG00000048129)	Csmd2 (ENSRNOG00000007057)	Hmgb4 (ENSRNOG00000032889)
Rat	MODERN SPECIES	14	Hnrnpa2b1 (ENSRNOG00000011175)	Nfe2l3 (ENSRNOG00000010886)	Cux1-ps1 (ENSRNOG00000065301)	ENSRNOG00000062862	Npvf (ENSRNOG00000010806)	LOC500124 (ENSRNOG00000010594)	Cycs-ps9 (ENSRNOG00000010452)	AC113910.1 (ENSRNOG00000033274)	Osbpl3 (ENSRNOG00000010011)	Gsdme (ENSRNOG00000009970)	Pals2 (ENSRNOG00000021579)	Npy (ENSRNOG00000046449)	RGD1564712 (ENSRNOG00000043158)	ENSRNOG00000065775	Stk31 (ENSRNOG00000057554)	RGD1563352 (ENSRNOG00000009583) #22	Fam221a (ENSRNOG00000009447)	LOC100910678 (ENSRNOG00000070474)	Ccdc126 (ENSRNOG00000009322)	Gemin7l1 (ENSRNOG00000034168)	Tra2a (ENSRNOG00000009156)	Igf2bp3 (ENSRNOG00000009052)	Malsu1 (ENSRNOG00000009035)	Gpnmb (ENSRNOG00000008816)	Svs1 (ENSRNOG00000008714)	Doxl2 (ENSRNOG00000032432)	Doxl1 (ENSRNOG00000023612)	Aoc1 (ENSRNOG00000008575)	Tmem176a (ENSRNOG00000023708)	Tmem176b (ENSRNOG00000008465)	Gimap5 (ENSRNOG00000008416)
Rat	MODERN SPECIES		Lin7b (ENSRNOG00000020746)	Ppfia3 (ENSRNOG00000020731)	Hrc (ENSRNOG00000020719) #7	Trpm4 (ENSRNOG00000020714) #8	Slc6a21 (ENSRNOG00000037219) #9	Slc6a16 (ENSRNOG00000025220) #10	Cd37 (ENSRNOG00000020699) #11	Tead2 (ENSRNOG00000020695) #12	Dkkl1 (ENSRNOG00000020686) #13	Kash5 (ENSRNOG00000025378) #14	Gfy (ENSRNOG00000047401) #16	Slc17a7 (ENSRNOG00000020650) #17	Pih1d1 (ENSRNOG00000020634) #18	Aldh16a1 (ENSRNOG00000020623) #19	Rpl13a (ENSRNOG00000020618) ##21	Rps11 (ENSRNOG00000020595) #22	Fcgrt (ENSRNOG00000020583) #23	Rcn3 (ENSRNOG00000043007) #24	Nosip (ENSRNOG00000020543) #25	Prrg2 (ENSRNOG00000020517) #26	Prr12 (ENSRNOG00000059408) #27	Rras (ENSRNOG00000037247) #28	Scaf1 (ENSRNOG00000056946) #29	Irf3 (ENSRNOG00000043388) #31	Bcl2l12 (ENSRNOG00000020486) #32	Prmt1 (ENSRNOG00000026109) #33	Cpt1c (ENSRNOG00000026163) #34	Tsks (ENSRNOG00000020443) #35	Ap2a1 (ENSRNOG00000026243) #36	Fuz (ENSRNOG00000053084) #37	Med25 (ENSRNOG00000020363)
Rat	MODERN SPECIES	5	Qdpr (ENSRNOG00000003253)	ENSRNOG00000069412	Ldb2 (ENSRNOG00000003205)	Tapt1 (ENSRNOG00000003174)	Prom1 (ENSRNOG00000003098)	Fgfbp1 (ENSRNOG00000003095)	Apex2l1 (ENSRNOG00000026046)	Cd38 (ENSRNOG00000003069)	Bst1 (ENSRNOG00000003064)	Fbxl5 (ENSRNOG00000005261)	Cc2d2a (ENSRNOG00000059715)	C1qtnf7 (ENSRNOG00000005094)	Isca2-ps1 (ENSRNOG00000005077)	Cpeb2 (ENSRNOG00000005043)	Rab5al1 (ENSRNOG00000062595)	Rps11-ps1 (ENSRNOG00000064268) #22	RGD1561694 (ENSRNOG00000029107)	Bod1l1 (ENSRNOG00000050437)	Nkx3-2 (ENSRNOG00000060782)	Rab28 (ENSRNOG00000017074)	AABR07015759.1 (ENSRNOG00000033640)	Hs3st1 (ENSRNOG00000068537)	Clnk (ENSRNOG00000051169)	Zfp518b (ENSRNOG00000028534)	Wdr1 (ENSRNOG00000028498)	Slc2a9 (ENSRNOG00000005302)	Drd5 (ENSRNOG00000005338)	Otop1 (ENSRNOG00000028423)	Tmem128 (ENSRNOG00000005346)	Lyar (ENSRNOG00000005374)	Zbtb49 (ENSRNOG00000005633)
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	820													Fyb2 (ENSNGAG00000017815)	Prkaa2 (ENSNGAG00000000779)	Plpp3 (ENSNGAG00000018872)	ENSNGAG00000005691 #22	Usp24 (ENSNGAG00000019206)	Pcsk9 (ENSNGAG00000021883)	Bsnd (ENSNGAG00000019132)	Dhcr24 (ENSNGAG00000012557)	Lexm (ENSNGAG00000017393)	Ttc22 (ENSNGAG00000003040)	Pars2 (ENSNGAG00000015140)	Ttc4 (ENSNGAG00000022703)	Mroh7 (ENSNGAG00000022964)	Fam151a (ENSNGAG00000023920)	Acot11 (ENSNGAG00000010332)	Ssbp3 (ENSNGAG00000024145)	Mrpl37 (ENSNGAG00000023680)	Cyb5rl (ENSNGAG00000023345)	Cdcp2 (ENSNGAG00000022960)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1286	Lin7b (ENSNGAG00000022313)	Ppfia3 (ENSNGAG00000021597)	ENSNGAG00000024042 #7	Trpm4 (ENSNGAG00000011776) #8	Cd37 (ENSNGAG00000013611) #11	Tead2 (ENSNGAG00000022467) #12	Dkkl1 (ENSNGAG00000021269) #13	Kash5 (ENSNGAG00000013348) #14	Pth2 (ENSNGAG00000023230) #15	Gfy (ENSNGAG00000021574) #16	Slc17a7 (ENSNGAG00000021921) #17	Pih1d1 (ENSNGAG00000021616) #18	Aldh16a1 (ENSNGAG00000022707) #19	Flt3l (ENSNGAG00000003724) #20	Rpl13a (ENSNGAG00000021984) ##21	Rps11 (ENSNGAG00000021376) #22	Fcgrt (ENSNGAG00000020635) #23	Rcn3 (ENSNGAG00000022084) #24	Nosip (ENSNGAG00000018058) #25	Prrg2 (ENSNGAG00000023084) #26	Prr12 (ENSNGAG00000023139) #27	Rras (ENSNGAG00000015476) #28	Scaf1 (ENSNGAG00000009448) #29	Irf3 (ENSNGAG00000022121) #31	Bcl2l12 (ENSNGAG00000013191) #32	Prmt1 (ENSNGAG00000018656) #33	Cpt1c (ENSNGAG00000022950) #34	Tsks (ENSNGAG00000007904) #35	Ap2a1 (ENSNGAG00000017671) #36	Fuz (ENSNGAG00000021167) #37	Med25 (ENSNGAG00000021950)
Upper Galilee mountains blind mole rat	MODERN SPECIES	895	Mov10l1 (ENSNGAG00000001193)	Panx2 (ENSNGAG00000013856)	Trabd (ENSNGAG00000007919)	Selenoo (ENSNGAG00000011370)	Tubgcp6 (ENSNGAG00000001119)	Hdac10 (ENSNGAG00000021671)	Mapk12 (ENSNGAG00000017682)	Mapk11 (ENSNGAG00000001344)	ENSNGAG00000010358	ENSNGAG00000011156	Dennd6b (ENSNGAG00000017789)	Ppp6r2 (ENSNGAG00000018791)	Sbf1 (ENSNGAG00000005935)	Adm2 (ENSNGAG00000020892)	Miox (ENSNGAG00000019418)	ENSNGAG00000023096 #22	Lmf2 (ENSNGAG00000013536)	Ncaph2 (ENSNGAG00000020931)	Sco2 (ENSNGAG00000016352)	Tymp (ENSNGAG00000019416)	Odf3b (ENSNGAG00000013244)	Syce3 (ENSNGAG00000002569)	Cpt1b (ENSNGAG00000021066) ##34	Chkb (ENSNGAG00000013327)	Mapk8ip2 (ENSNGAG00000014860)	Arsa (ENSNGAG00000013935)	Shank3 (ENSNGAG00000016865)	ENSNGAG00000016824	Rabl2 (ENSNGAG00000012843)
Rodentia	DUPLICATION
Rodentia	ANCESTRAL SPECIES																	ENSGT00390000002732.n.z.a ##22
Rodentia_A	ANCESTRAL SPECIES																	ENSGT00390000002732.n.z.a ##22
Hystricomorpha	ANCESTRAL SPECIES																	ENSGT00390000002732.n.z.a ##22
Hystricomorpha_a	ANCESTRAL SPECIES																	ENSGT00390000002732.n.z.a ##22
Hystricomorpha_b	ANCESTRAL SPECIES																	ENSGT00390000002732.n.z.a ##22
Degu	MODERN SPECIES	257	ENSODEG00000000963	APCDD1 (ENSODEG00000001023)	VAPA (ENSODEG00000001065)	RAB31 (ENSODEG00000001085)	PPP4R1 (ENSODEG00000001319)	RALBP1 (ENSODEG00000001763)	TWSG1 (ENSODEG00000003220)	ENSODEG00000003236	ENSODEG00000003298	ENSODEG00000003312	PROSER1 (ENSODEG00000003365)	ENSODEG00000003473	LHFPL6 (ENSODEG00000003836)	COG6 (ENSODEG00000003859)	ENSODEG00000000717	ENSODEG00000000728 ##22	FOXO1 (ENSODEG00000000747)	ENSODEG00000000752	ENSODEG00000000759	ENSODEG00000000772	ENSODEG00000000791	THSD1 (ENSODEG00000000849)	VPS36 (ENSODEG00000000909)	CKAP2 (ENSODEG00000001025)	NEK3 (ENSODEG00000001087)
Rodentia_B	ANCESTRAL SPECIES																	ENSGT00390000002732.n.z.a ##22
Myomorpha	ANCESTRAL SPECIES																	ENSGT00390000002732.n.z.a ##22
Lesser Egyptian jerboa	MODERN SPECIES	64	Zcchc24 (ENSJJAG00000010391)	Ppif (ENSJJAG00000011851)	Zmiz1 (ENSJJAG00000016307)	ENSJJAG00000007712	ENSJJAG00000016217	ENSJJAG00000006291	ENSJJAG00000019119	Kcnma1 (ENSJJAG00000015287)	Lrmda (ENSJJAG00000010771)	Zfp503 (ENSJJAG00000012451)	Comtd1 (ENSJJAG00000023380)	Vdac2 (ENSJJAG00000013813)	Samd8 (ENSJJAG00000019200)	Dusp13 (ENSJJAG00000021011)	Dusp29 (ENSJJAG00000012771)	ENSJJAG00000016757 ##22	ENSJJAG00000019180	ENSJJAG00000010577	Adk (ENSJJAG00000000489)	Ap3m1 (ENSJJAG00000021173)	Vcl (ENSJJAG00000017784)	Plau (ENSJJAG00000022417)	Camk2g (ENSJJAG00000013441)	Ndst2 (ENSJJAG00000015732)	Zswim8 (ENSJJAG00000002294)	Chchd1 (ENSJJAG00000001170)	Fut11 (ENSJJAG00000014414)	ENSJJAG00000000430	Synpo2l (ENSJJAG00000013887)	Myoz1 (ENSJJAG00000000328)	ENSJJAG00000007939
Muroidea	ANCESTRAL SPECIES																	ENSGT00390000002732.n.z.a ##22
Muroidea_A	ANCESTRAL SPECIES																	ENSGT00390000002732.n.z.a ##22
Cricetidae	ANCESTRAL SPECIES																	ENSGT00390000002732.n.z.a ##22
Cricetidae_B	ANCESTRAL SPECIES																	ENSGT00390000002732.n.z.a ##22
Prairie vole	MODERN SPECIES		ENSMOCG00000021013	ENSMOCG00000005730	Heatr4 (ENSMOCG00000015139)	Riox1 (ENSMOCG00000007570)	Numb (ENSMOCG00000022280)	Papln (ENSMOCG00000001461)	ENSMOCG00000005015	Psen1 (ENSMOCG00000009775)	ENSMOCG00000005921	Rbm25 (ENSMOCG00000001935)	Zfyve1 (ENSMOCG00000022979)	Dcaf4 (ENSMOCG00000015020)	Dpf3 (ENSMOCG00000003784)	Rgs6 (ENSMOCG00000005512)	Sipa1l1 (ENSMOCG00000020326)	ENSMOCG00000022199 ##22	Pcnx (ENSMOCG00000016626)	Map3k9 (ENSMOCG00000008905)	Ttc9 (ENSMOCG00000018568)	Med6 (ENSMOCG00000022028)	Synj2bp (ENSMOCG00000017570)	Cox16 (ENSMOCG00000004091)	Slc8a3 (ENSMOCG00000021316)	Smoc1 (ENSMOCG00000019851)	Slc10a1 (ENSMOCG00000015201)	Srsf5 (ENSMOCG00000013134)	Susd6 (ENSMOCG00000011519)	Ccdc177 (ENSMOCG00000011888)	Plekhd1 (ENSMOCG00000015986)	Slc39a9 (ENSMOCG00000014951)	ENSMOCG00000013525
Kangaroo rat	MODERN SPECIES	323															ENSDORG00000010015	ENSDORG00000023626 ##22	ENSDORG00000016106	Hook3 (ENSDORG00000001526)	Rnf170 (ENSDORG00000024809)	Thap1 (ENSDORG00000028182)	Chrna6 (ENSDORG00000008288)	Chrnb3 (ENSDORG00000006299)	Smim19 (ENSDORG00000030229)	Slc20a2 (ENSDORG00000002428)	ENSDORG00000002427	Dkk4 (ENSDORG00000002426)	Polb (ENSDORG00000002424)	Ikbkb (ENSDORG00000012732)	Plat (ENSDORG00000011916)	Ap3m2 (ENSDORG00000011915)	ENSDORG00000013658
Rodentia	ANCESTRAL SPECIES																	ENSGT00390000002732.n.z.b ##22
Rodentia_B	ANCESTRAL SPECIES																	ENSGT00390000002732.n.z.b ##22
Myomorpha	ANCESTRAL SPECIES																	ENSGT00390000002732.n.z.b ##22
Muroidea	ANCESTRAL SPECIES																	ENSGT00390000002732.n.z.b ##22
Muroidea_A	ANCESTRAL SPECIES																	ENSGT00390000002732.n.z.b ##22
Cricetidae	ANCESTRAL SPECIES																	ENSGT00390000002732.n.z.b ##22
Cricetidae_B	ANCESTRAL SPECIES																	ENSGT00390000002732.n.z.b ##22
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	354	Nop53 (ENSMOCG00000008367)	ENSMOCG00000017884	Crx (ENSMOCG00000020933)	Mzf1 (ENSMOCG00000011386)	Ube2m (ENSMOCG00000016295)	Chmp2a (ENSMOCG00000003404)	Trim28 (ENSMOCG00000015909)	Zbtb45 (ENSMOCG00000001388)	Slc27a5 (ENSMOCG00000004298)	ENSMOCG00000018903	Zfp324 (ENSMOCG00000019412)	Rnf225 (ENSMOCG00000002634)	Rps5 (ENSMOCG00000022992)	Zscan22 (ENSMOCG00000005599)	Zfp128 (ENSMOCG00000009285)	ENSMOCG00000018600 ##22	Zfp329 (ENSMOCG00000007161)	Lypd5 (ENSMOCG00000020197)	Kcnn4 (ENSMOCG00000004304)	Smg9 (ENSMOCG00000014343)	Irgc1 (ENSMOCG00000012592)	Cadm4 (ENSMOCG00000016755)	ENSMOCG00000012553	Irgq (ENSMOCG00000013018)	Pinlyp (ENSMOCG00000013333)	Xrcc1 (ENSMOCG00000022521)	Zfp575 (ENSMOCG00000017783)	Ethe1 (ENSMOCG00000006120)	ENSMOCG00000015518	Lypd4 (ENSMOCG00000008530)	Dmrtc2 (ENSMOCG00000018292)
Prairie vole	MODERN SPECIES	7	Pgam5 (ENSMOCG00000018637)	Pxmp2 (ENSMOCG00000014970)	Pole (ENSMOCG00000021483)	P2rx2 (ENSMOCG00000013202)	Lrcol1 (ENSMOCG00000007334)	Fbrsl1 (ENSMOCG00000020234)	Galnt9 (ENSMOCG00000011083)	ENSMOCG00000014860	Rph3a (ENSMOCG00000019903)	Ptpn11 (ENSMOCG00000017604)	ENSMOCG00000015858	Hectd4 (ENSMOCG00000000572)	ENSMOCG00000013800	Naa25 (ENSMOCG00000017243)	Erp29 (ENSMOCG00000013561)	ENSMOCG00000007822 ##22	Tmem116 (ENSMOCG00000002712)	Mapkapk5 (ENSMOCG00000020026)	Aldh2 (ENSMOCG00000019600)	ENSMOCG00000020267	Brap (ENSMOCG00000013461)	Atxn2 (ENSMOCG00000005219)	Sh2b3 (ENSMOCG00000013499)	Pheta1 (ENSMOCG00000004810)	Cux2 (ENSMOCG00000021745)	Myl2 (ENSMOCG00000010135)	Ccdc63 (ENSMOCG00000001073)	Ppp1cc (ENSMOCG00000009688)	Hvcn1 (ENSMOCG00000010612)	Tctn1 (ENSMOCG00000018752)	ENSMOCG00000014155
Lagomorpha	ANCESTRAL SPECIES																	ENSGT00390000002732.n #22
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	9	ENSOCUG00000038741	SLK (ENSOCUG00000003035)	COL17A1 (ENSOCUG00000003049)	SFR1 (ENSOCUG00000012794)	CFAP43 (ENSOCUG00000008688)	GSTO1 (ENSOCUG00000008702)	GSTO2 (ENSOCUG00000008708)	ITPRIP (ENSOCUG00000008713)	CFAP58 (ENSOCUG00000008719)	ENSOCUG00000031917	SORCS3 (ENSOCUG00000013880)	SORCS1 (ENSOCUG00000000972)	ENSOCUG00000016851	ENSOCUG00000037965	ENSOCUG00000039094	ENSOCUG00000024241 #22	XPNPEP1 (ENSOCUG00000003648)	ADD3 (ENSOCUG00000029743)	MXI1 (ENSOCUG00000015401)	SMNDC1 (ENSOCUG00000008145)	DUSP5 (ENSOCUG00000001540)	SMC3 (ENSOCUG00000011142)	RBM20 (ENSOCUG00000016811)	PDCD4 (ENSOCUG00000016822)	ENSOCUG00000036190	SHOC2 (ENSOCUG00000014348)	GPAM (ENSOCUG00000007893)	TECTB (ENSOCUG00000007903)	ENSOCUG00000023136	ACSL5 (ENSOCUG00000003593)	ZDHHC6 (ENSOCUG00000003602)
Rabbit	MODERN SPECIES		ENSOCUG00000031086	INSL6 (ENSOCUG00000013682)	ENSOCUG00000037721	JAK2 (ENSOCUG00000016853)	RCL1 (ENSOCUG00000008161)	ENSOCUG00000013279	ENSOCUG00000011411	CDC37L1 (ENSOCUG00000003468)	SPATA6L (ENSOCUG00000003455)	PLPP6 (ENSOCUG00000003465)	ENSOCUG00000022202	ENSOCUG00000026987	ENSOCUG00000013264	ENSOCUG00000036407	GLIS3 (ENSOCUG00000023004)	ENSOCUG00000027590 #22	ENSOCUG00000023393	RFX3 (ENSOCUG00000014086)	ENSOCUG00000039572	ENSOCUG00000004189	KCNV2 (ENSOCUG00000004385)	VLDLR (ENSOCUG00000002231)	ENSOCUG00000022775	SMARCA2 (ENSOCUG00000006320)	ENSOCUG00000000241	ENSOCUG00000035677	ENSOCUG00000023438	ENSOCUG00000034834	ENSOCUG00000037388	DMRT2 (ENSOCUG00000003299)	ENSOCUG00000027863
Rabbit	MODERN SPECIES	11	CCDC85A (ENSOCUG00000003491)	ENSOCUG00000038290	EFEMP1 (ENSOCUG00000014657)	PNPT1 (ENSOCUG00000006889)	PPP4R3B (ENSOCUG00000006880)	CFAP36 (ENSOCUG00000006874)	CCDC88A (ENSOCUG00000003620)	ENSOCUG00000011673	MTIF2 (ENSOCUG00000003617)	ENSOCUG00000003609	RTN4 (ENSOCUG00000012050)	EML6 (ENSOCUG00000012044)	SPTBN1 (ENSOCUG00000005008)	C2orf73 (ENSOCUG00000011269)	ENSOCUG00000015408	ENSOCUG00000027435 #22	ENSOCUG00000037992	ENSOCUG00000004696	GPR75 (ENSOCUG00000000815)	ERLEC1 (ENSOCUG00000014412)	ASB3 (ENSOCUG00000013610)	CHAC2 (ENSOCUG00000028058)	NRXN1 (ENSOCUG00000005620)	ENSOCUG00000028197	ENSOCUG00000038083	ENSOCUG00000035063	FSHR (ENSOCUG00000011234)	LHCGR (ENSOCUG00000011227)	GTF2A1L (ENSOCUG00000034645)	STON1 (ENSOCUG00000006982)	PPP1R21 (ENSOCUG00000006967)
Tree shrew	DUPLICATION
Tree shrew	MODERN SPECIES	6239																ENSTBEG00000015501 #22
Tree shrew	MODERN SPECIES	2068															ENSTBEG00000016579 ##21	ENSTBEG00000016677 #22
Primates	ANCESTRAL SPECIES	15	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.a.b ##21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Strepsirrhini	ANCESTRAL SPECIES	16	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.b.b ##21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Bushbaby	DUPLICATION
Bushbaby	MODERN SPECIES	119	FER1L6 (ENSOGAG00000028552)	TMEM65 (ENSOGAG00000029697)	TRMT12 (ENSOGAG00000015845)	RNF139 (ENSOGAG00000027959)	TATDN1 (ENSOGAG00000015849)	NDUFB9 (ENSOGAG00000030772)	MTSS1 (ENSOGAG00000015853)	ZNF572 (ENSOGAG00000015777)	SQLE (ENSOGAG00000015778)	WASHC5 (ENSOGAG00000015786)	NSMCE2 (ENSOGAG00000015798)	TRIB1 (ENSOGAG00000008784)	LRATD2 (ENSOGAG00000032355)	MYC (ENSOGAG00000005372)	ENSOGAG00000002105	ENSOGAG00000000369 #22	CYRIB (ENSOGAG00000002107)	ASAP1 (ENSOGAG00000002108)	ADCY8 (ENSOGAG00000001459)
Bushbaby	MODERN SPECIES	125	ENSOGAG00000026324	LRRC8C (ENSOGAG00000005172)	LRRC8D (ENSOGAG00000033080)	ZNF326 (ENSOGAG00000013770)	ENSOGAG00000032000	BARHL2 (ENSOGAG00000011079)	ZNF644 (ENSOGAG00000000665)	HFM1 (ENSOGAG00000032369)	ENSOGAG00000034533	CDC7 (ENSOGAG00000029298)	TGFBR3 (ENSOGAG00000016364)	ENSOGAG00000029718	BRDT (ENSOGAG00000001001)	EPHX4 (ENSOGAG00000001002)	ENSOGAG00000034632	ENSOGAG00000029908 #22	ENSOGAG00000001005	BTBD8 (ENSOGAG00000028985)	C1orf146 (ENSOGAG00000001007)	ENSOGAG00000001008	ENSOGAG00000001009	GFI1 (ENSOGAG00000027913)	EVI5 (ENSOGAG00000013240)	RPL5 (ENSOGAG00000013246)	DIPK1A (ENSOGAG00000013249)	ENSOGAG00000030106	MTF2 (ENSOGAG00000002432)	TMED5 (ENSOGAG00000015057)	CCDC18 (ENSOGAG00000006059)	DR1 (ENSOGAG00000005967)	FNBP1L (ENSOGAG00000011225)
Bushbaby	MODERN SPECIES	326	HRC (ENSOGAG00000034618) #7	TRPM4 (ENSOGAG00000000779) #8	ENSOGAG00000031181 #9	ENSOGAG00000026405	SLC6A16 (ENSOGAG00000010061) #10	ENSOGAG00000032610	CD37 (ENSOGAG00000015953) #11	TEAD2 (ENSOGAG00000010067) #12	DKKL1 (ENSOGAG00000010074) #13	KASH5 (ENSOGAG00000004608) #14	PTH2 (ENSOGAG00000025508) #15	SLC17A7 (ENSOGAG00000000525) #17	PIH1D1 (ENSOGAG00000004612) #18	ALDH16A1 (ENSOGAG00000004615) #19	ENSOGAG00000004625 ##21	ENSOGAG00000004627 #22	FCGRT (ENSOGAG00000033149) #23	RCN3 (ENSOGAG00000015973) #24	NOSIP (ENSOGAG00000031136) #25	PRRG2 (ENSOGAG00000029157) #26	PRR12 (ENSOGAG00000028634) #27	RRAS (ENSOGAG00000010243) #28	SCAF1 (ENSOGAG00000034071) #29	IRF3 (ENSOGAG00000011935) #31	BCL2L12 (ENSOGAG00000024949) #32	PRMT1 (ENSOGAG00000011938) #33	CPT1C (ENSOGAG00000012448) #34	TSKS (ENSOGAG00000009741) #35	AP2A1 (ENSOGAG00000016501) #36	FUZ (ENSOGAG00000024265) #37	MED25 (ENSOGAG00000005310)
Lemuriformes	ANCESTRAL SPECIES	15	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.b.b ##21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Lemuriformes_a	ANCESTRAL SPECIES	5	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.b.b ##21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Greater bamboo lemur	MODERN SPECIES	1049	PDE3B (ENSPSMG00000021835)	ENSPSMG00000021843	PSMA1 (ENSPSMG00000021887)	COPB1 (ENSPSMG00000021960)	ENSPSMG00000021981	ENSPSMG00000021993 #12	DKKL1 (ENSPSMG00000022010) #13	KASH5 (ENSPSMG00000022015) #14	PTH2 (ENSPSMG00000022021) #15	GFY (ENSPSMG00000022028) #16	SLC17A7 (ENSPSMG00000022041) #17	PIH1D1 (ENSPSMG00000022069) #18	ALDH16A1 (ENSPSMG00000022163) #19	FLT3LG (ENSPSMG00000022197) #20	ENSPSMG00000022217 ##21	RPS11 (ENSPSMG00000022235) #22	FCGRT (ENSPSMG00000022254) #23	RCN3 (ENSPSMG00000022260) #24	NOSIP (ENSPSMG00000022266) #25	PRRG2 (ENSPSMG00000022274) #26	PRR12 (ENSPSMG00000022287) #27	RRAS (ENSPSMG00000022293) #28	ENSPSMG00000022320 #29	IRF3 (ENSPSMG00000022357) #31	BCL2L12 (ENSPSMG00000022396) #32	PRMT1 (ENSPSMG00000022503) #33	ENSPSMG00000022558	CPT1C (ENSPSMG00000022578) #34	TSKS (ENSPSMG00000022602) #35	AP2A1 (ENSPSMG00000022943) #36	FUZ (ENSPSMG00000023196) #37
Coquerels sifaka	MODERN SPECIES	280	LIN7B (ENSPCOG00000019238)	PPFIA3 (ENSPCOG00000013244)	HRC (ENSPCOG00000026150) #7	TRPM4 (ENSPCOG00000000102) #8	CD37 (ENSPCOG00000025064) #11	TEAD2 (ENSPCOG00000010471) #12	DKKL1 (ENSPCOG00000015210) #13	KASH5 (ENSPCOG00000015950) #14	PTH2 (ENSPCOG00000021425) #15	GFY (ENSPCOG00000025078) #16	SLC17A7 (ENSPCOG00000026961) #17	PIH1D1 (ENSPCOG00000021089) #18	ALDH16A1 (ENSPCOG00000024480) #19	FLT3LG (ENSPCOG00000020522) #20	ENSPCOG00000023898 ##21	RPS11 (ENSPCOG00000028258) #22	FCGRT (ENSPCOG00000022052) #23	RCN3 (ENSPCOG00000015352) #24	NOSIP (ENSPCOG00000022792) #25	PRRG2 (ENSPCOG00000020752) #26	PRR12 (ENSPCOG00000027631) #27	RRAS (ENSPCOG00000018040) #28	SCAF1 (ENSPCOG00000008862) #29	ENSPCOG00000013825 #31	BCL2L12 (ENSPCOG00000026501) #32	PRMT1 (ENSPCOG00000013819) #33	ADM5 (ENSPCOG00000028667)	CPT1C (ENSPCOG00000017917) #34	TSKS (ENSPCOG00000004463) #35	AP2A1 (ENSPCOG00000025187) #36	FUZ (ENSPCOG00000026495) #37
Mouse lemur	DUPLICATION
Mouse lemur	MODERN SPECIES	29	BCDIN3D (ENSMICG00000031908)	FAIM2 (ENSMICG00000015588)	AQP2 (ENSMICG00000036745)	AQP5 (ENSMICG00000015604)	AQP6 (ENSMICG00000038503)	RACGAP1 (ENSMICG00000015618)	ASIC1 (ENSMICG00000015635)	SMARCD1 (ENSMICG00000015651)	GPD1 (ENSMICG00000015665)	CERS5 (ENSMICG00000015675)	LIMA1 (ENSMICG00000015696)	ENSMICG00000034794	ENSMICG00000017886	FAM186A (ENSMICG00000035471)	ENSMICG00000012388	ENSMICG00000046094 #22	DIP2B (ENSMICG00000005057)	ENSMICG00000043979	ATF1 (ENSMICG00000003301)	TMPRSS12 (ENSMICG00000014455)	ENSMICG00000043558	METTL7A (ENSMICG00000033526)	HIGD1C (ENSMICG00000044696)	ENSMICG00000017248	ENSMICG00000017243	ENSMICG00000012880	LETMD1 (ENSMICG00000009526)	CSRNP2 (ENSMICG00000043238)	TFCP2 (ENSMICG00000009544)	POU6F1 (ENSMICG00000009560)	SMAGP (ENSMICG00000045772)
Mouse lemur	MODERN SPECIES	14	LIN7B (ENSMICG00000015544)	PPFIA3 (ENSMICG00000015555)	HRC (ENSMICG00000047576) #7	TRPM4 (ENSMICG00000014746) #8	CD37 (ENSMICG00000034917) #11	TEAD2 (ENSMICG00000009284) #12	DKKL1 (ENSMICG00000009288) #13	KASH5 (ENSMICG00000009290) #14	PTH2 (ENSMICG00000029136) #15	GFY (ENSMICG00000031077) #16	SLC17A7 (ENSMICG00000030896) #17	PIH1D1 (ENSMICG00000009307) #18	ALDH16A1 (ENSMICG00000027350) #19	FLT3LG (ENSMICG00000030023) #20	ENSMICG00000009318 ##21	ENSMICG00000028139 #22	FCGRT (ENSMICG00000008987) #23	RCN3 (ENSMICG00000045822) #24	NOSIP (ENSMICG00000009006) #25	PRRG2 (ENSMICG00000009845) #26	PRR12 (ENSMICG00000032448) #27	RRAS (ENSMICG00000001757) #28	SCAF1 (ENSMICG00000032113) #29	IRF3 (ENSMICG00000001752) #31	BCL2L12 (ENSMICG00000001755) #32	PRMT1 (ENSMICG00000030079) #33	ENSMICG00000044006	CPT1C (ENSMICG00000013992) #34	TSKS (ENSMICG00000013406) #35	AP2A1 (ENSMICG00000003081) #36	FUZ (ENSMICG00000003089) #37
Haplorrhini	ANCESTRAL SPECIES	16	ENSGT01050000244900.a.b	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.a.b ##21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	5795														CD302 (ENSTSYG00000002564)	MARCHF7 (ENSTSYG00000002516)	ENSTSYG00000033626 #22	BAZ2B (ENSTSYG00000001627)	WDSUB1 (ENSTSYG00000001741)	TANC1 (ENSTSYG00000001709)
Tarsier	MODERN SPECIES	4401										METTL16 (ENSTSYG00000006264)	MNT (ENSTSYG00000006750)	SGSM2 (ENSTSYG00000006734)	TSR1 (ENSTSYG00000005468)	SRR (ENSTSYG00000005456)	SMG6 (ENSTSYG00000003406)	ENSTSYG00000025859 #22	HIC1 (ENSTSYG00000032991)
Tarsier	MODERN SPECIES	6384													ALDH16A1 (ENSTSYG00000036178) #19	FLT3LG (ENSTSYG00000037558) #20	RPL13A (ENSTSYG00000008791) ##21	RPS11 (ENSTSYG00000035050) #22	FCGRT (ENSTSYG00000029432) #23	RCN3 (ENSTSYG00000028024) #24	NOSIP (ENSTSYG00000037080) #25	PRRG2 (ENSTSYG00000013973) #26	PRR12 (ENSTSYG00000012999) #27
Simiiformes	ANCESTRAL SPECIES	16	ENSGT01050000244900.a.b	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.a.b ##21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Platyrrhini	DUPLICATION
Platyrrhini	DUPLICATION
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00390000002732.n.m.a #22
Mas night monkey	MODERN SPECIES	790	ENSANAG00000024375	RBKS (ENSANAG00000022543)	BABAM2 (ENSANAG00000029801)	FOSL2 (ENSANAG00000024076)	ENSANAG00000029897	PLB1 (ENSANAG00000033768)	PPP1CB (ENSANAG00000023075)	TRMT61B (ENSANAG00000019659)	WDR43 (ENSANAG00000035736)	TOGARAM2 (ENSANAG00000035464)	PCARE (ENSANAG00000036715)	ENSANAG00000030793	CLIP4 (ENSANAG00000019476)	ALK (ENSANAG00000035118)	YPEL5 (ENSANAG00000021134)	ENSANAG00000023193 #22	LBH (ENSANAG00000031643)	LCLAT1 (ENSANAG00000031030)	CAPN13 (ENSANAG00000028856)	GALNT14 (ENSANAG00000013279)	CAPN14 (ENSANAG00000031505)	EHD3 (ENSANAG00000020422)	XDH (ENSANAG00000033099)	SRD5A2 (ENSANAG00000024836)	ENSANAG00000033740	ENSANAG00000025823	MEMO1 (ENSANAG00000021250)	DPY30 (ENSANAG00000033628)	ENSANAG00000032382	SPAST (ENSANAG00000036158)	SLC30A6 (ENSANAG00000030881)
Cebidae	ANCESTRAL SPECIES																	ENSGT00390000002732.n.m.a #22
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00390000002732.n.m.a #22
Capuchin	MODERN SPECIES	45	ENSCCAG00000036890	FKBP14 (ENSCCAG00000033075)	SCRN1 (ENSCCAG00000031678)	WIPF3 (ENSCCAG00000026498)	CHN2 (ENSCCAG00000031145)	ENSCCAG00000031849	CPVL (ENSCCAG00000037178)	TRIL (ENSCCAG00000003310)	CREB5 (ENSCCAG00000028715)	JAZF1 (ENSCCAG00000025827)	TAX1BP1 (ENSCCAG00000032690)	ENSCCAG00000019760	ENSCCAG00000025275	HIBADH (ENSCCAG00000020606)	ENSCCAG00000037634	ENSCCAG00000029237 #22	EVX1 (ENSCCAG00000030309)	HOXA13 (ENSCCAG00000028264)	HOXA11 (ENSCCAG00000035880)	HOXA10 (ENSCCAG00000034574)	HOXA9 (ENSCCAG00000029541)	HOXA7 (ENSCCAG00000024332)	HOXA6 (ENSCCAG00000010092)	HOXA5 (ENSCCAG00000029402)	HOXA4 (ENSCCAG00000027072)	HOXA3 (ENSCCAG00000023332)	HOXA2 (ENSCCAG00000027236)	HOXA1 (ENSCCAG00000023769)	SKAP2 (ENSCCAG00000034754)	SNX10 (ENSCCAG00000029733)	CBX3 (ENSCCAG00000027804)
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00390000002732.n.m.b #22
Mas night monkey	MODERN SPECIES	583															ENSANAG00000021640	ENSANAG00000021616 #22
Platyrrhini	ANCESTRAL SPECIES	20	ENSGT01050000244900.a.b	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.a.a.a.a.b ##21	ENSGT00390000002732.n.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505.n.a.a #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	966	SPRY4 (ENSANAG00000029641)	ENSANAG00000032884	ENSANAG00000037720	FGF1 (ENSANAG00000030014)	ENSANAG00000029175	NR3C1 (ENSANAG00000027316)	ENSANAG00000021549	ENSANAG00000020874	YIPF5 (ENSANAG00000036994)	KCTD16 (ENSANAG00000026211)	ENSANAG00000037716	PRELID2 (ENSANAG00000037895)	GRXCR2 (ENSANAG00000029301)	SH3RF2 (ENSANAG00000037988)	PLAC8L1 (ENSANAG00000037249)	ENSANAG00000015519 #22	LARS1 (ENSANAG00000014375)	RBM27 (ENSANAG00000034039)	ENSANAG00000029729	POU4F3 (ENSANAG00000037628)	TCERG1 (ENSANAG00000028973)	PPP2R2B (ENSANAG00000034965)	STK32A (ENSANAG00000026412)	DPYSL3 (ENSANAG00000021603)	JAKMIP2 (ENSANAG00000023224)	SPINK1 (ENSANAG00000023762)	SCGB3A2 (ENSANAG00000023468)	C5orf46 (ENSANAG00000037273)	SPINK5 (ENSANAG00000034759)	SPINK14 (ENSANAG00000029562)	SPINK6 (ENSANAG00000037160)
Mas night monkey	MODERN SPECIES	1285	PPFIA3 (ENSANAG00000031902)	HRC (ENSANAG00000020571) #7	ENSANAG00000030806	SLC6A16 (ENSANAG00000036262) #10	CD37 (ENSANAG00000022990) #11	ENSANAG00000024433 #12	DKKL1 (ENSANAG00000037350) #13	KASH5 (ENSANAG00000020668) #14	PTH2 (ENSANAG00000018736) #15	GFY (ENSANAG00000030169) #16	SLC17A7 (ENSANAG00000036576) #17	PIH1D1 (ENSANAG00000029718) #18	ALDH16A1 (ENSANAG00000027131) #19	FLT3LG (ENSANAG00000029260) #20	ENSANAG00000030530 ##21	ENSANAG00000022898 #22	FCGRT (ENSANAG00000028290) #23	RCN3 (ENSANAG00000037039) #24	NOSIP (ENSANAG00000021786) #25	PRRG2 (ENSANAG00000035663) #26	PRR12 (ENSANAG00000034977) #27	RRAS (ENSANAG00000031347) #28	SCAF1 (ENSANAG00000016485) #29	IRF3 (ENSANAG00000032698) #31	BCL2L12 (ENSANAG00000029602) #32	PRMT1 (ENSANAG00000021704) #33	ADM5 (ENSANAG00000021656)	CPT1C (ENSANAG00000024263) #34	TSKS (ENSANAG00000020537) #35	AP2A1 (ENSANAG00000024248) #36	FUZ (ENSANAG00000037210) #37
Cebidae	ANCESTRAL SPECIES	8	ENSGT01050000244900.a.b	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.a.a.a.a.b ##21	ENSGT00390000002732.n.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505.n.a.a #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Marmoset	MODERN SPECIES	14	LIN7B (ENSCJAG00000000189)	PPFIA3 (ENSCJAG00000000151)	HRC (ENSCJAG00000075796) #7	TRPM4 (ENSCJAG00000081754) #8	CD37 (ENSCJAG00000047922) #11	TEAD2 (ENSCJAG00000000104) #12	DKKL1 (ENSCJAG00000000102) #13	KASH5 (ENSCJAG00000000094) #14	PTH2 (ENSCJAG00000000093) #15	GFY (ENSCJAG00000043345) #16	SLC17A7 (ENSCJAG00000000089) #17	PIH1D1 (ENSCJAG00000000084) #18	ALDH16A1 (ENSCJAG00000086591) #19	FLT3LG (ENSCJAG00000000081) #20	ENSCJAG00000000072 ##21	RPS11 (ENSCJAG00000000069) #22	FCGRT (ENSCJAG00000000066) #23	RCN3 (ENSCJAG00000000060) #24	NOSIP (ENSCJAG00000017616) #25	PRRG2 (ENSCJAG00000017641) #26	PRR12 (ENSCJAG00000017654) #27	RRAS (ENSCJAG00000003614) #28	SCAF1 (ENSCJAG00000003625) #29	IRF3 (ENSCJAG00000003637) #31	BCL2L12 (ENSCJAG00000003663) #32	ENSCJAG00000003670 #33	CPT1C (ENSCJAG00000003757) #34	TSKS (ENSCJAG00000003802) #35	AP2A1 (ENSCJAG00000003806) #36	FUZ (ENSCJAG00000003892) #37	MED25 (ENSCJAG00000003943)
Cebidae_a	ANCESTRAL SPECIES	20	ENSGT01050000244900.a.b	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.a.a.a.a.b ##21	ENSGT00390000002732.n.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505.n.a.a #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Bolivian squirrel monkey	MODERN SPECIES	169	PPFIA3 (ENSSBOG00000036261)	HRC (ENSSBOG00000035952) #7	TRPM4 (ENSSBOG00000025910) #8	SLC6A16 (ENSSBOG00000024851) #10	CD37 (ENSSBOG00000030150) #11	TEAD2 (ENSSBOG00000029357) #12	DKKL1 (ENSSBOG00000030135) #13	KASH5 (ENSSBOG00000024830) #14	PTH2 (ENSSBOG00000006554) #15	GFY (ENSSBOG00000020100) #16	SLC17A7 (ENSSBOG00000030154) #17	PIH1D1 (ENSSBOG00000019965) #18	ALDH16A1 (ENSSBOG00000024687) #19	FLT3LG (ENSSBOG00000021267) #20	RPL13A (ENSSBOG00000028481) ##21	RPS11 (ENSSBOG00000030203) #22	FCGRT (ENSSBOG00000030231) #23	RCN3 (ENSSBOG00000033369) #24	NOSIP (ENSSBOG00000034587) #25	PRRG2 (ENSSBOG00000024513) #26	PRR12 (ENSSBOG00000025929) #27	RRAS (ENSSBOG00000021255) #28	ENSSBOG00000027147 #29	IRF3 (ENSSBOG00000033765) #31	BCL2L12 (ENSSBOG00000024390) #32	PRMT1 (ENSSBOG00000021030) #33	ADM5 (ENSSBOG00000035636)	CPT1C (ENSSBOG00000022411) #34	TSKS (ENSSBOG00000034066) #35	AP2A1 (ENSSBOG00000022105) #36	FUZ (ENSSBOG00000025448) #37
Capuchin	DUPLICATION
Capuchin	MODERN SPECIES	166					ARHGAP29 (ENSCCAG00000024973)	ABCA4 (ENSCCAG00000033955)	GCLM (ENSCCAG00000017215)	ENSCCAG00000019911	DNTTIP2 (ENSCCAG00000025785)	BCAR3 (ENSCCAG00000036151)	FNBP1L (ENSCCAG00000034576)	DR1 (ENSCCAG00000030021)	CCDC18 (ENSCCAG00000030645)	TMED5 (ENSCCAG00000036284)	MTF2 (ENSCCAG00000037974)	ENSCCAG00000026616 #22	ENSCCAG00000031400	DIPK1A (ENSCCAG00000033496)	RPL5 (ENSCCAG00000024885)	ENSCCAG00000021472	EVI5 (ENSCCAG00000034070)	GFI1 (ENSCCAG00000036072)	RPAP2 (ENSCCAG00000024859)	GLMN (ENSCCAG00000038123)	C1orf146 (ENSCCAG00000032973)	BTBD8 (ENSCCAG00000031364)	ENSCCAG00000029619	ENSCCAG00000036616	ENSCCAG00000033925	ENSCCAG00000027791	ENSCCAG00000038015
Capuchin	MODERN SPECIES	266	PPFIA3 (ENSCCAG00000026376)	HRC (ENSCCAG00000031854) #7	TRPM4 (ENSCCAG00000027877) #8	SLC6A16 (ENSCCAG00000001024) #10	CD37 (ENSCCAG00000035588) #11	TEAD2 (ENSCCAG00000030155) #12	ENSCCAG00000022912 #13	KASH5 (ENSCCAG00000029552) #14	PTH2 (ENSCCAG00000026177) #15	GFY (ENSCCAG00000030107) #16	SLC17A7 (ENSCCAG00000026447) #17	PIH1D1 (ENSCCAG00000027317) #18	ALDH16A1 (ENSCCAG00000012874) #19	FLT3LG (ENSCCAG00000001876) #20	RPL13A (ENSCCAG00000022898) ##21	RPS11 (ENSCCAG00000037559) #22	FCGRT (ENSCCAG00000030152) #23	RCN3 (ENSCCAG00000035673) #24	NOSIP (ENSCCAG00000038048) #25	ENSCCAG00000024935	ENSCCAG00000036590	ENSCCAG00000007585	ENSCCAG00000024034
Catarrhini	ANCESTRAL SPECIES		ENSGT01050000244900.a.b	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.a.b.o.a ##21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Cercopithecidae	ANCESTRAL SPECIES	12	ENSGT01050000244900.a.b	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.a.b.o.a ##21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B.i.a #32	ENSGT00940000154700 #33	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Rhinopithecus	ANCESTRAL SPECIES	175	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.a.a.a.b ##21	ENSGT00390000010799.u.b.a.a.b.o.a ##21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B.i.a #32
Golden snub-nosed monkey	DUPLICATION
Golden snub-nosed monkey	MODERN SPECIES	1630	CFAP57 (ENSRROG00000019730)	EBNA1BP2 (ENSRROG00000012178)	CFAP144 (ENSRROG00000012345)	SLC2A1 (ENSRROG00000037496)	ENSRROG00000033231	ZNF691 (ENSRROG00000031294)	ENSRROG00000043754	ERMAP (ENSRROG00000045082)	SVBP (ENSRROG00000040670)	ENSRROG00000039617	C1orf50 (ENSRROG00000041151)	P3H1 (ENSRROG00000038286)	CLDN19 (ENSRROG00000041438)	ENSRROG00000032663	PPIH (ENSRROG00000044177)	ENSRROG00000020866 #22	CCDC30 (ENSRROG00000031908)	PPCS (ENSRROG00000017918)	ZMYND12 (ENSRROG00000032381)	RIMKLA (ENSRROG00000029394)	FOXJ3 (ENSRROG00000001301)	GUCA2A (ENSRROG00000020496)	GUCA2B (ENSRROG00000032199)
Golden snub-nosed monkey	MODERN SPECIES	1464	PPFIA3 (ENSRROG00000029194)	HRC (ENSRROG00000042675) #7	TRPM4 (ENSRROG00000001529) #8	SLC6A16 (ENSRROG00000037729) #10	CD37 (ENSRROG00000037102) #11	TEAD2 (ENSRROG00000039768) #12	DKKL1 (ENSRROG00000043796) #13	KASH5 (ENSRROG00000028573) #14	PTH2 (ENSRROG00000037368) #15	GFY (ENSRROG00000043399) #16	SLC17A7 (ENSRROG00000043166) #17	PIH1D1 (ENSRROG00000042187) #18	ALDH16A1 (ENSRROG00000044736) #19	FLT3LG (ENSRROG00000041379) #20	ENSRROG00000042976 ##21	RPS11 (ENSRROG00000045541) #22	FCGRT (ENSRROG00000010492) #23	RCN3 (ENSRROG00000041003) #24	NOSIP (ENSRROG00000030583) #25	PRRG2 (ENSRROG00000034623) #26	PRR12 (ENSRROG00000034505) #27	RRAS (ENSRROG00000019886) #28	SCAF1 (ENSRROG00000038280) #29	IRF3 (ENSRROG00000033700) #31	ENSRROG00000042358 #32	PRMT1 (ENSRROG00000039426) #33	ADM5 (ENSRROG00000042548)	CPT1C (ENSRROG00000029606) #34	TSKS (ENSRROG00000036981) #35	AP2A1 (ENSRROG00000039730) #36	FUZ (ENSRROG00000037776) #37
Black snub-nosed monkey	DUPLICATION
Black snub-nosed monkey	MODERN SPECIES	1661					MBTD1 (ENSRBIG00000031922)	ENSRBIG00000044790	SPAG9 (ENSRBIG00000044908)	WFIKKN2 (ENSRBIG00000038637)	LUC7L3 (ENSRBIG00000032055)	ANKRD40 (ENSRBIG00000030459)	ABCC3 (ENSRBIG00000036905)	CACNA1G (ENSRBIG00000044812)	SPATA20 (ENSRBIG00000041592)	EPN3 (ENSRBIG00000038001)	MYCBPAP (ENSRBIG00000029890)	ENSRBIG00000042395 #22	RSAD1 (ENSRBIG00000044435)	ACSF2 (ENSRBIG00000039108)	CHAD (ENSRBIG00000044280)	LRRC59 (ENSRBIG00000033634)	EME1 (ENSRBIG00000033427)	MRPL27 (ENSRBIG00000033398)	XYLT2 (ENSRBIG00000044739)	TMEM92 (ENSRBIG00000032676)	COL1A1 (ENSRBIG00000039556)	SGCA (ENSRBIG00000024658)	ENSRBIG00000035550	PPP1R9B (ENSRBIG00000000643)	SAMD14 (ENSRBIG00000040751)	PDK2 (ENSRBIG00000029967)	ITGA3 (ENSRBIG00000031472)
Black snub-nosed monkey	MODERN SPECIES	697	HRC (ENSRBIG00000044681) #7	TRPM4 (ENSRBIG00000037879) #8	ENSRBIG00000043070	SLC6A16 (ENSRBIG00000044820) #10	CD37 (ENSRBIG00000036974) #11	TEAD2 (ENSRBIG00000038090) #12	DKKL1 (ENSRBIG00000036522) #13	KASH5 (ENSRBIG00000042656) #14	PTH2 (ENSRBIG00000031263) #15	GFY (ENSRBIG00000028996) #16	SLC17A7 (ENSRBIG00000007433) #17	PIH1D1 (ENSRBIG00000035363) #18	ALDH16A1 (ENSRBIG00000040057) #19	FLT3LG (ENSRBIG00000037282) #20	RPL13A (ENSRBIG00000044737) ##21	ENSRBIG00000041174 #22	FCGRT (ENSRBIG00000017955) #23	RCN3 (ENSRBIG00000022285) #24	ENSRBIG00000000401 #25	PRRG2 (ENSRBIG00000002898) #26	PRR12 (ENSRBIG00000029709) #27	RRAS (ENSRBIG00000044344) #28	ENSRBIG00000040700 #29	IRF3 (ENSRBIG00000030363) #31	ENSRBIG00000035712 #32	PRMT1 (ENSRBIG00000037391) #33	ADM5 (ENSRBIG00000034258)	CPT1C (ENSRBIG00000034255) #34	TSKS (ENSRBIG00000043641) #35	AP2A1 (ENSRBIG00000032858) #36	FUZ (ENSRBIG00000038573) #37
Cercopithecinae	DUPLICATION
Cercopithecinae	DUPLICATION
Cercopithecinae	ANCESTRAL SPECIES	6	ENSGT00940000161475	ENSGT00950000182934.a.b	ENSGT00390000013823.b.c.a.a	ENSGT00390000013823.b.c.b	ENSGT00390000013823.b.c.a.b	ENSGT00940000156674	ENSGT00390000018318.v	ENSGT00950000182978.A.a.a	ENSGT00940000160174	ENSGT00940000155712	ENSGT00940000159614	ENSGT00940000155726	ENSGT00940000156799	ENSGT00940000156274	ENSGT00940000156248	ENSGT00390000002732.n.s.a #22	ENSGT00940000156509	ENSGT00940000159413	ENSGT00950000183215.c.a.a	ENSGT00950000183163.a.b.c	ENSGT00950000182941.a.a.a	ENSGT00940000159155	ENSGT00940000157264	ENSGT00940000160083	ENSGT00910000146884	ENSGT00940000157314.A	ENSGT00940000161124	ENSGT00510000048929	ENSGT00940000160850	ENSGT00940000154296.jb.b	ENSGT00940000153876.B.i
Cercopithecinae_a	ANCESTRAL SPECIES	6	ENSGT00940000161475	ENSGT00950000182934.a.b	ENSGT00390000013823.b.c.a.a	ENSGT00390000013823.b.c.b	ENSGT00390000013823.b.c.a.b	ENSGT00940000156674	ENSGT00390000018318.u.a	ENSGT00950000182978.A.a.a	ENSGT00940000160174	ENSGT00940000155712	ENSGT00940000159614	ENSGT00940000155726	ENSGT00940000156799	ENSGT00940000156274	ENSGT00940000156248	ENSGT00390000002732.n.s.a #22	ENSGT00940000156509	ENSGT00940000159413	ENSGT00950000183215.c.a.a	ENSGT00950000183163.a.b.c	ENSGT00950000182941.a.a.a	ENSGT00940000159155	ENSGT00940000157264	ENSGT00940000160083	ENSGT00910000146884	ENSGT00940000157314.A	ENSGT00940000161124	ENSGT00510000048929	ENSGT00940000160850	ENSGT00940000154296.jb.b	ENSGT00940000153876.B.i
Macaca	ANCESTRAL SPECIES	9	ENSGT00940000161475	ENSGT00950000182934.a.b	ENSGT00390000013823.b.c.a.a	ENSGT00390000013823.b.c.b	ENSGT00390000013823.b.c.a.b	ENSGT00940000156674	ENSGT00390000018318.u.a	ENSGT00950000182978.A.a.a	ENSGT00940000160174	ENSGT00940000155712	ENSGT00940000159614	ENSGT00940000155726	ENSGT00940000156799	ENSGT00940000156274	ENSGT00940000156248	ENSGT00390000002732.n.s.a #22	ENSGT00940000156509	ENSGT00940000159413	ENSGT00950000183215.c.a.a	ENSGT00950000183163.a.b.c	ENSGT00950000182941.a.a.a	ENSGT00940000159155	ENSGT00940000157264	ENSGT00940000160083	ENSGT00910000146884	ENSGT00940000157314.A	ENSGT00940000161124	ENSGT00510000048929	ENSGT00940000160850	ENSGT00940000154296.jb.b	ENSGT00940000153876.B.i
Macaca_a	ANCESTRAL SPECIES	9	ENSGT00950000182934.a.b	ENSGT00390000013823.b.c.a.a	ENSGT00390000013823.b.c.b	ENSGT00390000013823.b.c.a.b	ENSGT00940000156674	ENSGT00390000018318.u.a	ENSGT00950000182978.A.a.a	ENSGT00940000160174	ENSGT00940000155712	ENSGT00940000159614	ENSGT00940000155726	ENSGT01100000263539.b.a.a.a.a.a.b.a.a.a.a.b	ENSGT00940000156799	ENSGT00940000156274	ENSGT00940000156248	ENSGT00390000002732.n.s.a #22	ENSGT00940000156509	ENSGT00940000159413	ENSGT00950000183215.c.a.a	ENSGT00950000183163.a.b.c	ENSGT00950000182941.a.a.a	ENSGT00940000159155	ENSGT00940000157264	ENSGT00940000160083	ENSGT00940000157314.A	ENSGT00940000161124	ENSGT00510000048929	ENSGT00940000160850	ENSGT00940000158448	ENSGT00530000063484.a.c	ENSGT00530000064150
Rhesus	MODERN SPECIES	14	VNN3 (ENSMMUG00000015090)	VNN2 (ENSMMUG00000015091)	SLC18B1 (ENSMMUG00000013236)	RPS12 (ENSMMUG00000013237)	EYA4 (ENSMMUG00000005745)	TCF21 (ENSMMUG00000064455)	TBPL1 (ENSMMUG00000022920)	SLC2A12 (ENSMMUG00000022921)	ENSMMUG00000061787	SGK1 (ENSMMUG00000008140)	ENSMMUG00000053927	ENSMMUG00000061139	HBS1L (ENSMMUG00000004802)	MYB (ENSMMUG00000018166)	AHI1 (ENSMMUG00000009368)	ENSMMUG00000044284 #22	ENSMMUG00000053328	PDE7B (ENSMMUG00000003708)	MTFR2 (ENSMMUG00000003709)	BCLAF1 (ENSMMUG00000003710)	MAP7 (ENSMMUG00000016373)	MAP3K5 (ENSMMUG00000016376)	PEX7 (ENSMMUG00000016382)	SLC35D3 (ENSMMUG00000055984)	IL20RA (ENSMMUG00000013566)	ENSMMUG00000062792	IL22RA2 (ENSMMUG00000013562)	IFNGR1 (ENSMMUG00000062426)	OLIG3 (ENSMMUG00000047350)	TNFAIP3 (ENSMMUG00000008869)	PERP (ENSMMUG00000049387)
Crab-eating macaque	MODERN SPECIES	14	VNN1 (ENSMFAG00000044253)	ENSMFAG00000038860	VNN2 (ENSMFAG00000043542)	SLC18B1 (ENSMFAG00000040844)	ENSMFAG00000042652	EYA4 (ENSMFAG00000037522)	TCF21 (ENSMFAG00000060473)	TBPL1 (ENSMFAG00000040137)	SLC2A12 (ENSMFAG00000002658)	SGK1 (ENSMFAG00000037310)	ENSMFAG00000055793	ALDH8A1 (ENSMFAG00000037548)	HBS1L (ENSMFAG00000003766)	MYB (ENSMFAG00000036535)	AHI1 (ENSMFAG00000033411)	ENSMFAG00000007648 #22	ENSMFAG00000065391	PDE7B (ENSMFAG00000032923)	MTFR2 (ENSMFAG00000038742)	BCLAF1 (ENSMFAG00000039754)	MAP7 (ENSMFAG00000042781)	MAP3K5 (ENSMFAG00000040944)	PEX7 (ENSMFAG00000036835)	SLC35D3 (ENSMFAG00000036990)	IL20RA (ENSMFAG00000030911)	ENSMFAG00000053800	IL22RA2 (ENSMFAG00000030047)	IFNGR1 (ENSMFAG00000003984)	ENSMFAG00000054860	OLIG3 (ENSMFAG00000027435)	ENSMFAG00000051130
Cercopithecinae_b	ANCESTRAL SPECIES	17	ENSGT00940000161475	ENSGT00950000182934.a.b	ENSGT00390000013823.b.c.a.a	ENSGT00390000013823.b.c.b	ENSGT00390000013823.b.c.a.b	ENSGT00940000156674	ENSGT00390000018318.v	ENSGT00950000182978.A.a.a	ENSGT00940000160174	ENSGT00940000155712	ENSGT00940000159614	ENSGT00940000155726	ENSGT00940000156799	ENSGT00940000156274	ENSGT00940000156248	ENSGT00390000002732.n.s.a #22	ENSGT00940000156509	ENSGT00940000159413	ENSGT00950000183215.c.a.a	ENSGT00950000183163.a.b.c	ENSGT00950000182941.a.a.a	ENSGT00940000159155	ENSGT00940000157264	ENSGT00940000160083	ENSGT00910000146884	ENSGT00940000157314.A	ENSGT00940000161124	ENSGT00510000048929	ENSGT00940000160850	ENSGT00940000154296.jb.b	ENSGT00940000153876.B.i
Olive baboon	MODERN SPECIES	16	VNN2 (ENSPANG00000018931)	SLC18B1 (ENSPANG00000011087)	RPS12 (ENSPANG00000032106)	EYA4 (ENSPANG00000013262)	ENSPANG00000050946	ENSPANG00000040940	TCF21 (ENSPANG00000037480)	ENSPANG00000041421	TBPL1 (ENSPANG00000020089)	SLC2A12 (ENSPANG00000022519)	SGK1 (ENSPANG00000010260)	ENSPANG00000047724	ALDH8A1 (ENSPANG00000022180)	HBS1L (ENSPANG00000007075)	MYB (ENSPANG00000018932)	ENSPANG00000033626 #22	AHI1 (ENSPANG00000008061)	PDE7B (ENSPANG00000015851)	MTFR2 (ENSPANG00000014438)	BCLAF1 (ENSPANG00000022182)	ENSPANG00000047396	MAP7 (ENSPANG00000016952)	MAP3K5 (ENSPANG00000015068)	PEX7 (ENSPANG00000023965)	SLC35D3 (ENSPANG00000005133)	ENSPANG00000033937	IL20RA (ENSPANG00000017634)	ENSPANG00000039384	IL22RA2 (ENSPANG00000000356)	IFNGR1 (ENSPANG00000018173)	OLIG3 (ENSPANG00000006465)
Vervet Monkey	MODERN SPECIES	4	TAAR2 (ENSCSAG00000016673)	TAAR1 (ENSCSAG00000000184)	VNN1 (ENSCSAG00000016681)	VNN2 (ENSCSAG00000016687)	SLC18B1 (ENSCSAG00000016693)	ENSCSAG00000016696	EYA4 (ENSCSAG00000016701)	TCF21 (ENSCSAG00000016705)	TBPL1 (ENSCSAG00000016709)	SLC2A12 (ENSCSAG00000016714)	SGK1 (ENSCSAG00000016730)	ENSCSAG00000016735	ALDH8A1 (ENSCSAG00000016740)	HBS1L (ENSCSAG00000016791)	MYB (ENSCSAG00000016815)	ENSCSAG00000016818 #22	AHI1 (ENSCSAG00000016829)	PDE7B (ENSCSAG00000016849)	MTFR2 (ENSCSAG00000016854)	BCLAF1 (ENSCSAG00000016867)	MAP7 (ENSCSAG00000016880)	MAP3K5 (ENSCSAG00000016892)	PEX7 (ENSCSAG00000016896)	SLC35D3 (ENSCSAG00000016900)	IL20RA (ENSCSAG00000016925)	IL22RA2 (ENSCSAG00000016931)	IFNGR1 (ENSCSAG00000016936)	OLIG3 (ENSCSAG00000000185)	ENSCSAG00000016938	TNFAIP3 (ENSCSAG00000016944)	PERP (ENSCSAG00000016948)
Cercopithecinae	ANCESTRAL SPECIES																	ENSGT00390000002732.n.s.b #22
Vervet Monkey	MODERN SPECIES	26	ARHGAP10 (ENSCSAG00000003372)	ENSCSAG00000003366	DCLK2 (ENSCSAG00000003362)	ENSCSAG00000003358	MAB21L2 (ENSCSAG00000000389)	LRBA (ENSCSAG00000003355)	ENSCSAG00000003348	ENSCSAG00000000388	RPS3A (ENSCSAG00000003344)	SH3D19 (ENSCSAG00000003339)	PRSS48 (ENSCSAG00000003331)	FHIP1A (ENSCSAG00000003322)	GATB (ENSCSAG00000003318)	FBXW7 (ENSCSAG00000003313)	TMEM154 (ENSCSAG00000003309)	ENSCSAG00000000387 #22	TIGD4 (ENSCSAG00000000386)	ARFIP1 (ENSCSAG00000003306)	FHDC1 (ENSCSAG00000003305)	ENSCSAG00000003303	TRIM2 (ENSCSAG00000003302)	MND1 (ENSCSAG00000003300)	TMEM131L (ENSCSAG00000003293)	TLR2 (ENSCSAG00000000385)	RNF175 (ENSCSAG00000003282)	SFRP2 (ENSCSAG00000003281)	ENSCSAG00000003278	PLRG1 (ENSCSAG00000003275)	FGB (ENSCSAG00000003272)	ENSCSAG00000003270	FGG (ENSCSAG00000003268)
Cercopithecinae	ANCESTRAL SPECIES	1	ENSGT01050000244900.a.b	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026.a #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.a.b.o.a ##21	ENSGT00390000002732.n.t #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B.i.a #32	ENSGT00940000154700 #33	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Vervet Monkey	MODERN SPECIES	25	PPFIA3 (ENSCSAG00000002755)	HRC (ENSCSAG00000002752) #7	TRPM4 (ENSCSAG00000002727) #8	SLC6A16 (ENSCSAG00000002652) #10	CD37 (ENSCSAG00000002650) #11	TEAD2 (ENSCSAG00000002642) #12	DKKL1 (ENSCSAG00000002634) #13	KASH5 (ENSCSAG00000002618) #14	PTH2 (ENSCSAG00000002588) #15	GFY (ENSCSAG00000002584) #16	SLC17A7 (ENSCSAG00000002583) #17	PIH1D1 (ENSCSAG00000002579) #18	ALDH16A1 (ENSCSAG00000002553) #19	FLT3LG (ENSCSAG00000002539) #20	ENSCSAG00000002537 ##21	RPS11 (ENSCSAG00000002534) #22	FCGRT (ENSCSAG00000002513) #23	RCN3 (ENSCSAG00000002501) #24	NOSIP (ENSCSAG00000002499) #25	PRRG2 (ENSCSAG00000002498) #26	PRR12 (ENSCSAG00000002495) #27	RRAS (ENSCSAG00000002482) #28	SCAF1 (ENSCSAG00000002481) #29	IRF3 (ENSCSAG00000002477) #31	PRMT1 (ENSCSAG00000002474) #33	ADM5 (ENSCSAG00000002466)	CPT1C (ENSCSAG00000002461) #34	TSKS (ENSCSAG00000002454) #35	ENSCSAG00000002449 ##36	AP2A1 (ENSCSAG00000002446) #36	FUZ (ENSCSAG00000002433) #37
Cercopithecinae_a	ANCESTRAL SPECIES	3	ENSGT01050000244900.a.b	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026.a #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.a.b.o.a ##21	ENSGT00390000002732.n.t #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B.i.a #32	ENSGT00940000154700 #33	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Macaca	ANCESTRAL SPECIES	12	ENSGT01050000244900.a.b	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026.a #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.a.b.o.a ##21	ENSGT00390000002732.n.t #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B.i.a #32	ENSGT00940000154700 #33	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Pig-tailed macaque	DUPLICATION
Pig-tailed macaque	MODERN SPECIES	104								ENSMNEG00000040532	CYP2C9 (ENSMNEG00000038926)	ENSMNEG00000042327	ENSMNEG00000037980	ENSMNEG00000041232	ENSMNEG00000044889	HELLS (ENSMNEG00000042628)	TBC1D12 (ENSMNEG00000042246)	ENSMNEG00000021980 #22	NOC3L (ENSMNEG00000027484)	PLCE1 (ENSMNEG00000030694)	SLC35G1 (ENSMNEG00000043665)	ENSMNEG00000033144	LGI1 (ENSMNEG00000036411)	FRA10AC1 (ENSMNEG00000040322)	PDE6C (ENSMNEG00000040848)	FFAR4 (ENSMNEG00000031922)	RBP4 (ENSMNEG00000031052)	CEP55 (ENSMNEG00000032641)	MYOF (ENSMNEG00000013341)	ENSMNEG00000044241	ENSMNEG00000030366	CYP26A1 (ENSMNEG00000028946)	CYP26C1 (ENSMNEG00000045176)
Pig-tailed macaque	MODERN SPECIES	248	HRC (ENSMNEG00000032961) #7	TRPM4 (ENSMNEG00000044458) #8	ENSMNEG00000031663	SLC6A16 (ENSMNEG00000032765) #10	CD37 (ENSMNEG00000040079) #11	TEAD2 (ENSMNEG00000030869) #12	DKKL1 (ENSMNEG00000040824) #13	KASH5 (ENSMNEG00000040116) #14	PTH2 (ENSMNEG00000045538) #15	GFY (ENSMNEG00000045535) #16	SLC17A7 (ENSMNEG00000036752) #17	PIH1D1 (ENSMNEG00000035306) #18	ALDH16A1 (ENSMNEG00000039451) #19	FLT3LG (ENSMNEG00000029282) #20	ENSMNEG00000034977 ##21	RPS11 (ENSMNEG00000043643) #22	FCGRT (ENSMNEG00000036913) #23	RCN3 (ENSMNEG00000031036) #24	NOSIP (ENSMNEG00000030270) #25	PRRG2 (ENSMNEG00000026492) #26	PRR12 (ENSMNEG00000032408) #27	RRAS (ENSMNEG00000032590) #28	SCAF1 (ENSMNEG00000041264) #29	IRF3 (ENSMNEG00000037326) #31	ENSMNEG00000038769 #32	PRMT1 (ENSMNEG00000007881) #33	ADM5 (ENSMNEG00000038068)	CPT1C (ENSMNEG00000042605) #34	TSKS (ENSMNEG00000034415) #35	AP2A1 (ENSMNEG00000038226) #36	FUZ (ENSMNEG00000038987) #37
Macaca_a	ANCESTRAL SPECIES	4	ENSGT00940000161569	ENSGT00940000162213.h	ENSGT00940000163317	ENSGT00940000153496.a.b	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00390000007792.l	ENSGT00950000183213.a.b	ENSGT00390000007792.k	ENSGT00940000161624	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000010799.u.b.a.a.b.o.a ##21	ENSGT00390000002732.n.t #22	ENSGT00390000011216	ENSGT00940000156830	ENSGT00940000154464.a	ENSGT00390000017385	ENSGT00530000063937.a	ENSGT00390000014660.o	ENSGT00940000158326	ENSGT00390000014943	ENSGT00940000156584	ENSGT00390000005672.a.a	ENSGT00940000158833	ENSGT00940000160279	ENSGT01030000234646.B.a.a.a.a	ENSGT00940000157746	ENSGT00940000158951
Crab-eating macaque	MODERN SPECIES	7	NME2 (ENSMFAG00000007607)	NME1 (ENSMFAG00000058207)	SPAG9 (ENSMFAG00000035882)	ENSMFAG00000052208	ENSMFAG00000055535	TOB1 (ENSMFAG00000025713)	WFIKKN2 (ENSMFAG00000041670)	ANKRD40CL (ENSMFAG00000049218)	LUC7L3 (ENSMFAG00000031780)	ANKRD40 (ENSMFAG00000003914)	ABCC3 (ENSMFAG00000040341)	ENSMFAG00000065101	ENSMFAG00000055574	EPN3 (ENSMFAG00000044525)	MYCBPAP (ENSMFAG00000045294)	ENSMFAG00000024046 #22	RSAD1 (ENSMFAG00000035805)	ACSF2 (ENSMFAG00000042230)	CHAD (ENSMFAG00000031869)	EME1 (ENSMFAG00000040987)	ENSMFAG00000031691	XYLT2 (ENSMFAG00000043415)	TMEM92 (ENSMFAG00000040318)	COL1A1 (ENSMFAG00000033990)	SGCA (ENSMFAG00000029765)	PPP1R9B (ENSMFAG00000041494)	SAMD14 (ENSMFAG00000045601)	PDK2 (ENSMFAG00000042437)	ITGA3 (ENSMFAG00000043382)	DLX3 (ENSMFAG00000032276)	DLX4 (ENSMFAG00000013144)
Rhesus	MODERN SPECIES	10	PPFIA3 (ENSMMUG00000007533)	HRC (ENSMMUG00000064607) #7	TRPM4 (ENSMMUG00000007538) #8	SLC6A16 (ENSMMUG00000014787) #10	CD37 (ENSMMUG00000014789) #11	TEAD2 (ENSMMUG00000014791) #12	DKKL1 (ENSMMUG00000014794) #13	KASH5 (ENSMMUG00000014795) #14	PTH2 (ENSMMUG00000014797) #15	GFY (ENSMMUG00000061126) #16	SLC17A7 (ENSMMUG00000014800) #17	PIH1D1 (ENSMMUG00000022116) #18	ALDH16A1 (ENSMMUG00000022117) #19	FLT3LG (ENSMMUG00000051892) #20	RPL13A (ENSMMUG00000007551) ##21	RPS11 (ENSMMUG00000007549) #22	ENSMMUG00000012273 #23	ENSMMUG00000009787 #24	NOSIP (ENSMMUG00000003819) #25	PRRG2 (ENSMMUG00000049747) #26	PRR12 (ENSMMUG00000012937) #27	RRAS (ENSMMUG00000028733) #28	SCAF1 (ENSMMUG00000012938) #29	IRF3 (ENSMMUG00000022735) #31	BCL2L12 (ENSMMUG00000003926) #32	PRMT1 (ENSMMUG00000003029) #33	ADM5 (ENSMMUG00000038407)	CPT1C (ENSMMUG00000014735) #34	TSKS (ENSMMUG00000019328) #35	AP2A1 (ENSMMUG00000011612) #36	FUZ (ENSMMUG00000011614) #37
Cercopithecinae_b	ANCESTRAL SPECIES	23	ENSGT01050000244900.a.b	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026.a #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.a.b.o.a ##21	ENSGT00390000002732.n.t #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B.j #32	ENSGT00940000154700 #33	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Olive baboon	MODERN SPECIES	12	ENSPANG00000039841	IGSF23 (ENSPANG00000012805)	ENSPANG00000040501	CEACAM20 (ENSPANG00000030689)	SLC6A16 (ENSPANG00000014593) #10	CD37 (ENSPANG00000013472) #11	TEAD2 (ENSPANG00000023792) #12	DKKL1 (ENSPANG00000023596) #13	KASH5 (ENSPANG00000012936) #14	PTH2 (ENSPANG00000017970) #15	SLC17A7 (ENSPANG00000020841) #17	PIH1D1 (ENSPANG00000017749) #18	ALDH16A1 (ENSPANG00000017969) #19	FLT3LG (ENSPANG00000008127) #20	ENSPANG00000012050 ##21	ENSPANG00000012512 #22	FCGRT (ENSPANG00000012030) #23	RCN3 (ENSPANG00000002525) #24	NOSIP (ENSPANG00000010475) #25	PRRG2 (ENSPANG00000017531) #26	PRR12 (ENSPANG00000012511) #27	RRAS (ENSPANG00000015923) #28	SCAF1 (ENSPANG00000008801) #29	IRF3 (ENSPANG00000014697) #31	ENSPANG00000017968 #32	PRMT1 (ENSPANG00000021846) #33	ADM5 (ENSPANG00000013470)	CPT1C (ENSPANG00000019475) #34	TSKS (ENSPANG00000012509) #35	AP2A1 (ENSPANG00000012049) #36	FUZ (ENSPANG00000012029) #37
Cercopithecinae_d	ANCESTRAL SPECIES	9	ENSGT01050000244900.a.b	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026.a #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.a.b.o.a ##21	ENSGT00390000002732.n.t #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B.i.a #32	ENSGT00940000154700 #33	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Drill	MODERN SPECIES	753	PPFIA3 (ENSMLEG00000035903)	HRC (ENSMLEG00000041368) #7	TRPM4 (ENSMLEG00000039997) #8	SLC6A16 (ENSMLEG00000034720) #10	CD37 (ENSMLEG00000009882) #11	TEAD2 (ENSMLEG00000033177) #12	DKKL1 (ENSMLEG00000032132) #13	KASH5 (ENSMLEG00000040647) #14	PTH2 (ENSMLEG00000028213) #15	GFY (ENSMLEG00000030206) #16	SLC17A7 (ENSMLEG00000033767) #17	PIH1D1 (ENSMLEG00000042489) #18	ALDH16A1 (ENSMLEG00000031645) #19	FLT3LG (ENSMLEG00000013825) #20	ENSMLEG00000038132 ##21	RPS11 (ENSMLEG00000029083) #22
Sooty mangabey	DUPLICATION
Sooty mangabey	MODERN SPECIES	324	TAAR1 (ENSCATG00000010900)	VNN1 (ENSCATG00000033244)	ENSCATG00000037011	VNN2 (ENSCATG00000012186)	SLC18B1 (ENSCATG00000035898)	ENSCATG00000036985	EYA4 (ENSCATG00000043182)	TCF21 (ENSCATG00000037198)	TBPL1 (ENSCATG00000045200)	SLC2A12 (ENSCATG00000010423)	SGK1 (ENSCATG00000044319)	ENSCATG00000043694	ALDH8A1 (ENSCATG00000045306)	HBS1L (ENSCATG00000043042)	MYB (ENSCATG00000029830)	ENSCATG00000039064 #22	AHI1 (ENSCATG00000017191)	PDE7B (ENSCATG00000039515)	MTFR2 (ENSCATG00000029871)	BCLAF1 (ENSCATG00000018862)	MAP7 (ENSCATG00000041354)	MAP3K5 (ENSCATG00000017514)	PEX7 (ENSCATG00000030986)	SLC35D3 (ENSCATG00000029391)	ENSCATG00000043504	IL20RA (ENSCATG00000037479)	IL22RA2 (ENSCATG00000031043)	IFNGR1 (ENSCATG00000037440)	OLIG3 (ENSCATG00000015711)	ENSCATG00000041894	ENSCATG00000044693
Sooty mangabey	MODERN SPECIES	228	PPFIA3 (ENSCATG00000030416)	HRC (ENSCATG00000019115) #7	TRPM4 (ENSCATG00000028889) #8	SLC6A16 (ENSCATG00000039181) #10	CD37 (ENSCATG00000035497) #11	TEAD2 (ENSCATG00000020018) #12	DKKL1 (ENSCATG00000031178) #13	KASH5 (ENSCATG00000031423) #14	PTH2 (ENSCATG00000044577) #15	GFY (ENSCATG00000037315) #16	SLC17A7 (ENSCATG00000031736) #17	PIH1D1 (ENSCATG00000033857) #18	ALDH16A1 (ENSCATG00000013461) #19	FLT3LG (ENSCATG00000044584) #20	ENSCATG00000011576 ##21	RPS11 (ENSCATG00000017632) #22	FCGRT (ENSCATG00000033126) #23	RCN3 (ENSCATG00000043770) #24	NOSIP (ENSCATG00000035285) #25	PRRG2 (ENSCATG00000030138) #26	PRR12 (ENSCATG00000042487) #27	RRAS (ENSCATG00000007379) #28	SCAF1 (ENSCATG00000033591) #29	IRF3 (ENSCATG00000040122) #31	ENSCATG00000032204 #32	PRMT1 (ENSCATG00000041012) #33	ADM5 (ENSCATG00000035159)	CPT1C (ENSCATG00000039916) #34	TSKS (ENSCATG00000042464) #35	AP2A1 (ENSCATG00000032213) #36	FUZ (ENSCATG00000025834) #37
Sooty mangabey	MODERN SPECIES	564									LUC7L3 (ENSCATG00000034891)	ANKRD40 (ENSCATG00000041250)	ENSCATG00000045059	CACNA1G (ENSCATG00000039012)	SPATA20 (ENSCATG00000042972)	EPN3 (ENSCATG00000040419)	MYCBPAP (ENSCATG00000035055)	ENSCATG00000016163 #22	RSAD1 (ENSCATG00000042705)	ACSF2 (ENSCATG00000035014)	CHAD (ENSCATG00000038156)	LRRC59 (ENSCATG00000015912)	EME1 (ENSCATG00000000384)	MRPL27 (ENSCATG00000028901)	XYLT2 (ENSCATG00000038951)	TMEM92 (ENSCATG00000044818)	COL1A1 (ENSCATG00000026514)	SGCA (ENSCATG00000004963)	ENSCATG00000044884	PPP1R9B (ENSCATG00000037746)	SAMD14 (ENSCATG00000031573)	PDK2 (ENSCATG00000032247)	ITGA3 (ENSCATG00000022073)
Hominoidea	ANCESTRAL SPECIES		ENSGT01050000244900.a.b	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.a.a.a.a.b ##21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B.g #32	ENSGT00940000154700 #33	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Gibbon	DUPLICATION
Gibbon	MODERN SPECIES		EP400 (ENSNLEG00000008508)	ENSNLEG00000035444	ENSNLEG00000031082	ENSNLEG00000008548	NOC4L (ENSNLEG00000008553)	ENSNLEG00000008568	ENSNLEG00000027581	FBRSL1 (ENSNLEG00000008576)	LRCOL1 (ENSNLEG00000008583)	POLE (ENSNLEG00000008602)	PXMP2 (ENSNLEG00000034633)	ENSNLEG00000027733	PGAM5 (ENSNLEG00000008711)	ENSNLEG00000008725	GOLGA3 (ENSNLEG00000012426)	ENSNLEG00000019081 #22	CHFR (ENSNLEG00000012438)	ZNF605 (ENSNLEG00000012463)	ZNF26 (ENSNLEG00000012466)	ZNF84 (ENSNLEG00000012472)	ZNF140 (ENSNLEG00000012479)	ZNF10 (ENSNLEG00000035463)	ZNF268 (ENSNLEG00000012485)	ENSNLEG00000012507
Gibbon	MODERN SPECIES		HRC (ENSNLEG00000004990) #7	ENSNLEG00000005008 #8	ENSNLEG00000032063	SLC6A16 (ENSNLEG00000005039) #10	CD37 (ENSNLEG00000036137) #11	TEAD2 (ENSNLEG00000005091) #12	ENSNLEG00000005111 #13	KASH5 (ENSNLEG00000005112) #14	PTH2 (ENSNLEG00000005124) #15	GFY (ENSNLEG00000034360) #16	SLC17A7 (ENSNLEG00000005132) #17	ENSNLEG00000033852 #18	ENSNLEG00000005172 #19	ENSNLEG00000005205 #20	ENSNLEG00000005211 ##21	RPS11 (ENSNLEG00000031159) #22	ENSNLEG00000028731	RCN3 (ENSNLEG00000005216) #24	NOSIP (ENSNLEG00000005234) #25	ENSNLEG00000031889 #26	PRR12 (ENSNLEG00000005252) #27	RRAS (ENSNLEG00000005258) #28	SCAF1 (ENSNLEG00000027756) #29	ENSNLEG00000005277 #31	ENSNLEG00000005290 #32	ENSNLEG00000005306 #33	ADM5 (ENSNLEG00000031967)	ENSNLEG00000005319 #34	ENSNLEG00000005330 #35	AP2A1 (ENSNLEG00000005331) #36	FUZ (ENSNLEG00000005341) #37
Hominidae	ANCESTRAL SPECIES		ENSGT01050000244900.a.b	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.a.a.a.a.b ##21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B.g #32	ENSGT00940000154700 #33	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Orangutan	MODERN SPECIES	10	PPFIA3 (ENSPPYG00000010237)	HRC (ENSPPYG00000010238) #7	TRPM4 (ENSPPYG00000010239) #8	SLC6A16 (ENSPPYG00000010240) #10	ENSPPYG00000010242 #11	TEAD2 (ENSPPYG00000010243) #12	DKKL1 (ENSPPYG00000010244) #13	KASH5 (ENSPPYG00000010245) #14	ENSPPYG00000010246 #15	GFY (ENSPPYG00000032044) #16	SLC17A7 (ENSPPYG00000010247) #17	PIH1D1 (ENSPPYG00000010248) #18	ALDH16A1 (ENSPPYG00000010249) #19	FLT3LG (ENSPPYG00000032479) #20	RPL13A (ENSPPYG00000010251) ##21	RPS11 (ENSPPYG00000025860) #22	FCGRT (ENSPPYG00000010253) #23	RCN3 (ENSPPYG00000010254) #24	ENSPPYG00000010255 #25	PRRG2 (ENSPPYG00000010256) #26	ENSPPYG00000010257 #27	ENSPPYG00000010258 #28	SCAF1 (ENSPPYG00000010259) #29	ENSPPYG00000010260 #31	BCL2L12 (ENSPPYG00000029416) #32	PRMT1 (ENSPPYG00000010261) #33	ADM5 (ENSPPYG00000038301)	CPT1C (ENSPPYG00000010527) #34	ENSPPYG00000041203	TSKS (ENSPPYG00000010538) #35	AP2A1 (ENSPPYG00000010262) #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES		ENSGT00940000158693.C.e.a #8	ENSGT00940000154319.u.a.c.a	ENSGT00940000158693.C.f #8	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.a.a.a.a.b ##21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B.g #32	ENSGT00940000154700 #33	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Gorilla	MODERN SPECIES	10	HRC (ENSGGOG00000008420) #7	TRPM4 (ENSGGOG00000008427) #8	ENSGGOG00000040729	SLC6A16 (ENSGGOG00000016349) #10	CD37 (ENSGGOG00000016357) #11	TEAD2 (ENSGGOG00000016367) #12	DKKL1 (ENSGGOG00000016382) #13	KASH5 (ENSGGOG00000016130) #14	PTH2 (ENSGGOG00000026280) #15	GFY (ENSGGOG00000038755) #16	SLC17A7 (ENSGGOG00000016632) #17	PIH1D1 (ENSGGOG00000016642) #18	ALDH16A1 (ENSGGOG00000010135) #19	FLT3LG (ENSGGOG00000010144) #20	RPL13A (ENSGGOG00000002932) ##21	RPS11 (ENSGGOG00000002936) #22	FCGRT (ENSGGOG00000008774) #23	RCN3 (ENSGGOG00000008781) #24	NOSIP (ENSGGOG00000007004) #25	PRRG2 (ENSGGOG00000001713) #26	ENSGGOG00000001717 #27	RRAS (ENSGGOG00000038961) #28	SCAF1 (ENSGGOG00000000495) #29	ENSGGOG00000000499 #31	ENSGGOG00000000501 #32	PRMT1 (ENSGGOG00000000503) #33	ADM5 (ENSGGOG00000022737)	CPT1C (ENSGGOG00000012237) #34	ENSGGOG00000025810	TSKS (ENSGGOG00000010134) #35	AP2A1 (ENSGGOG00000010141) #36
Homo/Pan group	ANCESTRAL SPECIES		ENSGT00940000158693.C.e.a #8	ENSGT00940000154319.u.a.c.a	ENSGT00940000158693.C.f #8	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.a.a.a.a.b ##21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B.g #32	ENSGT00940000154700 #33	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Human	MODERN SPECIES	10	PPFIA3 (ENSG00000177380)	HRC (ENSG00000130528) #7	TRPM4 (ENSG00000130529) #8	SLC6A16 (ENSG00000063127) #10	CD37 (ENSG00000104894) #11	TEAD2 (ENSG00000074219) #12	DKKL1 (ENSG00000104901) #13	KASH5 (ENSG00000161609) #14	PTH2 (ENSG00000142538) #15	GFY (ENSG00000261949) #16	SLC17A7 (ENSG00000104888) #17	PIH1D1 (ENSG00000104872) #18	ALDH16A1 (ENSG00000161618) #19	FLT3LG (ENSG00000090554) #20	RPL13A (ENSG00000142541) ##21	RPS11 (ENSG00000142534) #22	FCGRT (ENSG00000104870) #23	RCN3 (ENSG00000142552) #24	NOSIP (ENSG00000142546) #25	PRRG2 (ENSG00000126460) #26	PRR12 (ENSG00000126464) #27	RRAS (ENSG00000126458) #28	SCAF1 (ENSG00000126461) #29	IRF3 (ENSG00000126456) #31	BCL2L12 (ENSG00000126453) #32	PRMT1 (ENSG00000126457) #33	ADM5 (ENSG00000224420)	CPT1C (ENSG00000169169) #34	TSKS (ENSG00000126467) #35	AP2A1 (ENSG00000196961) #36	FUZ (ENSG00000010361) #37
Pan	ANCESTRAL SPECIES	9	ENSGT00730000111459 #7	ENSGT00940000158693.C.e.a #8	ENSGT00940000154319.u.a.c.a	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.a.a.a.a.b ##21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B.g #32	ENSGT00940000154700 #33	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Chimpanzee	MODERN SPECIES	10	HRC (ENSPTRG00000011284) #7	TRPM4 (ENSPTRG00000011286) #8	ENSPTRG00000043756	SLC6A16 (ENSPTRG00000011288) #10	CD37 (ENSPTRG00000011289) #11	TEAD2 (ENSPTRG00000011290) #12	DKKL1 (ENSPTRG00000011292) #13	KASH5 (ENSPTRG00000011293) #14	PTH2 (ENSPTRG00000045765) #15	GFY (ENSPTRG00000042806) #16	SLC17A7 (ENSPTRG00000011294) #17	PIH1D1 (ENSPTRG00000011295) #18	ALDH16A1 (ENSPTRG00000011296) #19	FLT3LG (ENSPTRG00000011297) #20	RPL13A (ENSPTRG00000011298) ##21	RPS11 (ENSPTRG00000011299) #22	FCGRT (ENSPTRG00000023168) #23	RCN3 (ENSPTRG00000011303) #24	NOSIP (ENSPTRG00000011304) #25	PRRG2 (ENSPTRG00000011305) #26	PRR12 (ENSPTRG00000011306) #27	RRAS (ENSPTRG00000011307) #28	SCAF1 (ENSPTRG00000011308) #29	IRF3 (ENSPTRG00000011309) #31	BCL2L12 (ENSPTRG00000011310) #32	PRMT1 (ENSPTRG00000040282) #33	CPT1C (ENSPTRG00000011313) #34	ENSPTRG00000045479	TSKS (ENSPTRG00000011314) #35	AP2A1 (ENSPTRG00000011315) #36	FUZ (ENSPTRG00000011318) #37
Bonobo	MODERN SPECIES	10	PPFIA3 (ENSPPAG00000025943)	HRC (ENSPPAG00000031502) #7	TRPM4 (ENSPPAG00000031662) #8	SLC6A16 (ENSPPAG00000038255) #10	CD37 (ENSPPAG00000038312) #11	TEAD2 (ENSPPAG00000041515) #12	DKKL1 (ENSPPAG00000028279) #13	KASH5 (ENSPPAG00000040313) #14	ENSPPAG00000042298 #15	GFY (ENSPPAG00000026513) #16	SLC17A7 (ENSPPAG00000042379) #17	PIH1D1 (ENSPPAG00000035526) #18	ALDH16A1 (ENSPPAG00000037820) #19	ENSPPAG00000020354 #20	RPL13A (ENSPPAG00000037365) ##21	RPS11 (ENSPPAG00000038695) #22	FCGRT (ENSPPAG00000043605) #23	RCN3 (ENSPPAG00000037004) #24	NOSIP (ENSPPAG00000033342) #25	PRRG2 (ENSPPAG00000009244) #26	PRR12 (ENSPPAG00000001106) #27	RRAS (ENSPPAG00000033675) #28	SCAF1 (ENSPPAG00000040154) #29	ENSPPAG00000035759 #31	ENSPPAG00000008160 #32	PRMT1 (ENSPPAG00000034989) #33	ADM5 (ENSPPAG00000038454)	CPT1C (ENSPPAG00000036321) #34	ENSPPAG00000043211	TSKS (ENSPPAG00000003064) #35	AP2A1 (ENSPPAG00000025102) #36
Laurasiatheria	ANCESTRAL SPECIES	5	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.a #21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000002732.n #22
Hedgehog	MODERN SPECIES	9101																RPS11 (ENSEEUG00000003392) #22
Common shrew	DUPLICATION
Common shrew	MODERN SPECIES	13529																ENSSARG00000006814 #22
Common shrew	MODERN SPECIES	4175														ALDH16A1 (ENSSARG00000003119) #19	ENSSARG00000003214 #20	RPS11 (ENSSARG00000003236) #22
Laurasiatheria_a	ANCESTRAL SPECIES	5	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.a #21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Artiodactyla	ANCESTRAL SPECIES	5	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.a.i #21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Artiodactyla_a	ANCESTRAL SPECIES	4	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.a.i #21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Camelidae	ANCESTRAL SPECIES	40	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.a.i #21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Arabian camel	MODERN SPECIES	35	TRPM4 (ENSCDRG00005003217) #8	ENSCDRG00005003301 #9	ENSCDRG00005003322	SLC6A16 (ENSCDRG00005006445) #10	CD37 (ENSCDRG00005006530) #11	TEAD2 (ENSCDRG00005006601) #12	DKKL1 (ENSCDRG00005006697) #13	KASH5 (ENSCDRG00005006777) #14	PTH2 (ENSCDRG00005006847) #15	GFY (ENSCDRG00005006879) #16	SLC17A7 (ENSCDRG00005006915) #17	PIH1D1 (ENSCDRG00005006995) #18	ALDH16A1 (ENSCDRG00005007092) #19	FLT3LG (ENSCDRG00005007423) #20	ENSCDRG00005007454 #21	RPS11 (ENSCDRG00005007529) #22	FCGRT (ENSCDRG00005007612) #23	RCN3 (ENSCDRG00005007659) #24	NOSIP (ENSCDRG00005007735) #25	PRRG2 (ENSCDRG00005007833) #26	ENSCDRG00005007865 #27	RRAS (ENSCDRG00005007942) #28	ENSCDRG00005008031 #29	IRF3 (ENSCDRG00005008089) #31	BCL2L12 (ENSCDRG00005008265) #32	PRMT1 (ENSCDRG00005008397) #33	ENSCDRG00005008537	CPT1C (ENSCDRG00005008587) #34	TSKS (ENSCDRG00005008834) #35	AP2A1 (ENSCDRG00005008977) #36	FUZ (ENSCDRG00005009177) #37
Artiodactyla_b	ANCESTRAL SPECIES	4	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.a.i #21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Cetacea	ANCESTRAL SPECIES	6	ENSGT01050000244900.a.b	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.a.i #21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Blue whale	MODERN SPECIES	10	PPFIA3 (ENSBMSG00010015555)	HRC (ENSBMSG00010015506) #7	TRPM4 (ENSBMSG00010015389) #8	SLC6A16 (ENSBMSG00010015306) #10	CD37 (ENSBMSG00010015170) #11	TEAD2 (ENSBMSG00010014899) #12	DKKL1 (ENSBMSG00010014828) #13	KASH5 (ENSBMSG00010014734) #14	PTH2 (ENSBMSG00010014700) #15	GFY (ENSBMSG00010014599) #16	SLC17A7 (ENSBMSG00010014462) #17	PIH1D1 (ENSBMSG00010014378) #18	ALDH16A1 (ENSBMSG00010014229) #19	FLT3LG (ENSBMSG00010014045) #20	ENSBMSG00010021476 #21	RPS11 (ENSBMSG00010021462) #22	FCGRT (ENSBMSG00010021425) #23	RCN3 (ENSBMSG00010021418) #24	NOSIP (ENSBMSG00010021409) #25	PRRG2 (ENSBMSG00010021396) #26	PRR12 (ENSBMSG00010021379) #27	RRAS (ENSBMSG00010021366) #28	SCAF1 (ENSBMSG00010021355) #29	IRF3 (ENSBMSG00010021347) #31	PRMT1 (ENSBMSG00010021258) #33	ENSBMSG00010021213	CPT1C (ENSBMSG00010021196) #34	TSKS (ENSBMSG00010021176) #35	AP2A1 (ENSBMSG00010021155) #36	FUZ (ENSBMSG00010021113) #37	MED25 (ENSBMSG00010021075)
Odontoceti	ANCESTRAL SPECIES	6	ENSGT00940000153222.a.b.a	ENSGT01050000244900.a.b	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.a.i #21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Sperm whale	MODERN SPECIES	32				ENSPCTG00005016339 #8	CD37 (ENSPCTG00005016170) #11	TEAD2 (ENSPCTG00005016120) #12	DKKL1 (ENSPCTG00005016039) #13	KASH5 (ENSPCTG00005015801) #14	PTH2 (ENSPCTG00005015750) #15	GFY (ENSPCTG00005015696) #16	SLC17A7 (ENSPCTG00005015504) #17	PIH1D1 (ENSPCTG00005015437) #18	ALDH16A1 (ENSPCTG00005014757) #19	FLT3LG (ENSPCTG00005014716) #20	RPL13A (ENSPCTG00005014604) #21	RPS11 (ENSPCTG00005014521) #22	FCGRT (ENSPCTG00005014411) #23	RCN3 (ENSPCTG00005014344) #24	NOSIP (ENSPCTG00005014288) #25	ENSPCTG00005014202 #26
Odontoceti_a	ANCESTRAL SPECIES	7	ENSGT00940000153222.a.b.a	ENSGT01050000244900.a.b	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.a.i #21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Dolphin	MODERN SPECIES	3246						CD37 (ENSTTRG00000005342) #11	TEAD2 (ENSTTRG00000005361) #12	DKKL1 (ENSTTRG00000005371) #13	KASH5 (ENSTTRG00000005384) #14	PTH2 (ENSTTRG00000005425) #15	SLC17A7 (ENSTTRG00000005430) #17	PIH1D1 (ENSTTRG00000005448) #18	ALDH16A1 (ENSTTRG00000005455) #19	FLT3LG (ENSTTRG00000005474) #20	ENSTTRG00000005485 #21	RPS11 (ENSTTRG00000005495) #22	FCGRT (ENSTTRG00000005500) #23	RCN3 (ENSTTRG00000005508) #24	NOSIP (ENSTTRG00000005514) #25	PRRG2 (ENSTTRG00000005516) #26	ENSTTRG00000005519 #27	RRAS (ENSTTRG00000005524) #28	SCAF1 (ENSTTRG00000005527) #29	IRF3 (ENSTTRG00000005531) #31	BCL2L12 (ENSTTRG00000005533) #32	PRMT1 (ENSTTRG00000005537) #33	CPT1C (ENSTTRG00000005539) #34	TSKS (ENSTTRG00000005542) #35	AP2A1 (ENSTTRG00000005545) #36	FUZ (ENSTTRG00000005547) #37
Odontoceti_b	ANCESTRAL SPECIES	5	ENSGT00940000153222.a.b.a	ENSGT01050000244900.a.b	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.a.i #21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #34	ENSGT00940000153096.b.c.b.a.b.a	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36
Vaquita	MODERN SPECIES	10	SNRNP70 (ENSPSNG00000015326)	LIN7B (ENSPSNG00000015206)	PPFIA3 (ENSPSNG00000014977)	ENSPSNG00000014908 #7	TRPM4 (ENSPSNG00000014728) #8	CD37 (ENSPSNG00000014576) #11	TEAD2 (ENSPSNG00000014317) #12	DKKL1 (ENSPSNG00000014226) #13	KASH5 (ENSPSNG00000014166) #14	PTH2 (ENSPSNG00000014105) #15	SLC17A7 (ENSPSNG00000013695) #17	PIH1D1 (ENSPSNG00000013618) #18	ALDH16A1 (ENSPSNG00000013301) #19	FLT3LG (ENSPSNG00000013210) #20	ENSPSNG00000013096 #21	RPS11 (ENSPSNG00000013005) #22	FCGRT (ENSPSNG00000012896) #23	RCN3 (ENSPSNG00000012833) #24	NOSIP (ENSPSNG00000021969) #25	PRRG2 (ENSPSNG00000021949) #26	PRR12 (ENSPSNG00000021923) #27	RRAS (ENSPSNG00000021900) #28	IRF3 (ENSPSNG00000021872) #31	SCAF1 (ENSPSNG00000021783) #29	CPT1C (ENSPSNG00000021576) #34	ENSPSNG00000021511	TSKS (ENSPSNG00000021441) #35	AP2A1 (ENSPSNG00000021396) #36	FUZ (ENSPSNG00000021345) #37	MED25 (ENSPSNG00000021248)	PTOV1 (ENSPSNG00000021199)
Monodontidae	ANCESTRAL SPECIES	3	ENSGT00940000153222.a.b.a	ENSGT01050000244900.a.b	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.a.i #21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #34	ENSGT00940000153096.b.c.b.a.b.a	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36
Beluga whale	MODERN SPECIES	14	LIN7B (ENSDLEG00000000470)	PPFIA3 (ENSDLEG00000000270)	HRC (ENSDLEG00000000203) #7	TRPM4 (ENSDLEG00000000152) #8	CD37 (ENSDLEG00000000123) #11	ENSDLEG00000000102 ##12	DKKL1 (ENSDLEG00000000085) #13	KASH5 (ENSDLEG00000000059) #14	PTH2 (ENSDLEG00000000043) #15	GFY (ENSDLEG00000005724) #16	SLC17A7 (ENSDLEG00000005707) #17	PIH1D1 (ENSDLEG00000005667) #18	ALDH16A1 (ENSDLEG00000005644) #19	FLT3LG (ENSDLEG00000005583) #20	RPL13A (ENSDLEG00000005530) #21	RPS11 (ENSDLEG00000005522) #22	FCGRT (ENSDLEG00000005485) #23	RCN3 (ENSDLEG00000005474) #24	ENSDLEG00000005466 #25	PRRG2 (ENSDLEG00000005453) #26	PRR12 (ENSDLEG00000005433) #27	RRAS (ENSDLEG00000005402) #28	SCAF1 (ENSDLEG00000005393) #29	IRF3 (ENSDLEG00000005363) #31	BCL2L12 (ENSDLEG00000005332) #32	ENSDLEG00000005326	PRMT1 (ENSDLEG00000005316) #33	ADM5 (ENSDLEG00000005309)	CPT1C (ENSDLEG00000004382) #34	ENSDLEG00000004185	ENSDLEG00000004141 #35
Narwhal	DUPLICATION
Narwhal	MODERN SPECIES	307	ENSMMNG00015011164	ENSMMNG00015011177	ADGRL3 (ENSMMNG00015011387)	IGFBP7 (ENSMMNG00015011877)	ENSMMNG00015011894	POLR2B (ENSMMNG00015011928)	ENSMMNG00015011995	NOA1 (ENSMMNG00015012010)	ENSMMNG00015012028	ENSMMNG00015012040	ENSMMNG00015012049	ENSMMNG00015012062	ENSMMNG00015012122	HOPX (ENSMMNG00015012141)	THEGL (ENSMMNG00015012165)	ENSMMNG00015012180 #22	ENSMMNG00015012186	SRP72 (ENSMMNG00015012225)	PAICS (ENSMMNG00015012325)	PPAT (ENSMMNG00015012362)	ENSMMNG00015012406	AASDH (ENSMMNG00015012429)	CRACD (ENSMMNG00015012549)	ENSMMNG00015012615	CEP135 (ENSMMNG00015012654)	EXOC1 (ENSMMNG00015012800)	EXOC1L (ENSMMNG00015012879)	NMU (ENSMMNG00015012920)	PDCL2 (ENSMMNG00015012976)	CLOCK (ENSMMNG00015012990)	TMEM165 (ENSMMNG00015013015)
Narwhal	MODERN SPECIES	296	SNRNP70 (ENSMMNG00015002806)	LIN7B (ENSMMNG00015002825)	PPFIA3 (ENSMMNG00015002883)	TRPM4 (ENSMMNG00015003024) #8	CD37 (ENSMMNG00015003082) #11	ENSMMNG00015003135 #12	DKKL1 (ENSMMNG00015003218) #13	KASH5 (ENSMMNG00015003246) #14	PTH2 (ENSMMNG00015003265) #15	GFY (ENSMMNG00015003272) #16	SLC17A7 (ENSMMNG00015003297) #17	PIH1D1 (ENSMMNG00015003335) #18	ALDH16A1 (ENSMMNG00015003418) #19	ENSMMNG00015003557 #20	ENSMMNG00015003578 #21	ENSMMNG00015003626 #22	FCGRT (ENSMMNG00015003661) #23	RCN3 (ENSMMNG00015003695) #24	NOSIP (ENSMMNG00015003722) #25	PRRG2 (ENSMMNG00015003734) #26	PRR12 (ENSMMNG00015003767) #27	RRAS (ENSMMNG00015003824) #28	SCAF1 (ENSMMNG00015003847) #29	IRF3 (ENSMMNG00015003876) #31	BCL2L12 (ENSMMNG00015005053) #32	PRMT1 (ENSMMNG00015005090) #33	ENSMMNG00015005132	CPT1C (ENSMMNG00015005146) #34	ENSMMNG00015005171	TSKS (ENSMMNG00015005180) #35	AP2A1 (ENSMMNG00015005214) #36
Pecora	ANCESTRAL SPECIES	4	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.a.i #21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Yarkand deer	MODERN SPECIES	32	PRDM6 (ENSCHYG00000005012)	PPIC (ENSCHYG00000005034)	SNX24 (ENSCHYG00000005056)	SNX2 (ENSCHYG00000005112)	SNCAIP (ENSCHYG00000005329)	ENSCHYG00000005670	LOX (ENSCHYG00000005705)	SRFBP1 (ENSCHYG00000005772)	FTMT (ENSCHYG00000005816)	PRR16 (ENSCHYG00000000399)	FAM170A (ENSCHYG00000000416)	HSD17B4 (ENSCHYG00000000468)	TNFAIP8 (ENSCHYG00000000581)	DMXL1 (ENSCHYG00000000630)	DTWD2 (ENSCHYG00000000678)	ENSCHYG00000000719 #22	ENSCHYG00000000735	ENSCHYG00000000743	SEMA6A (ENSCHYG00000000796)	COMMD10 (ENSCHYG00000001036)	ENSCHYG00000001130	ARL10 (ENSCHYG00000001158)	NOP16 (ENSCHYG00000001193)	ENSCHYG00000001204	CLTB (ENSCHYG00000001215)	FAF2 (ENSCHYG00000001227)	RNF44 (ENSCHYG00000001257)	CDHR2 (ENSCHYG00000001290)	GPRIN1 (ENSCHYG00000001429)	ENSCHYG00000001450	EIF4E1B (ENSCHYG00000001478)
Percora_a	ANCESTRAL SPECIES	4	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.a.i #21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Bovidae	ANCESTRAL SPECIES	4	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.a.i #21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Caprinae	ANCESTRAL SPECIES	4	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.a.i.b #21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Rambouillet Sheep	MODERN SPECIES	5	TRPM4 (ENSOARG00020021353) #8	ENSOARG00020021835 #9	ENSOARG00020021931	ENSOARG00020021984 #10	CD37 (ENSOARG00020022044) #11	ENSOARG00020022124 #12	DKKL1 (ENSOARG00020022489) #13	KASH5 (ENSOARG00020022523) #14	PTH2 (ENSOARG00020022564) #15	GFY (ENSOARG00020022588) #16	SLC17A7 (ENSOARG00020022623) #17	PIH1D1 (ENSOARG00020022711) #18	ALDH16A1 (ENSOARG00020022768) #19	FLT3LG (ENSOARG00020022954) #20	ENSOARG00020022981 #21	RPS11 (ENSOARG00020009205) #22	FCGRT (ENSOARG00020009245) #23	RCN3 (ENSOARG00020009363) #24	NOSIP (ENSOARG00020009405) #25	PRRG2 (ENSOARG00020009444) #26	PRR12 (ENSOARG00020009487) #27	RRAS (ENSOARG00020009655) #28	SCAF1 (ENSOARG00020009687) #29	IRF3 (ENSOARG00020009726) #31	BCL2L12 (ENSOARG00020009833) #32	PRMT1 (ENSOARG00020009967) #33	ENSOARG00020010309	CPT1C (ENSOARG00020010351) #34	TSKS (ENSOARG00020010412) #35	AP2A1 (ENSOARG00020010527) #36	FUZ (ENSOARG00020010715) #37
Goat	DUPLICATION
Goat	MODERN SPECIES	6	C11orf16 (ENSCHIG00000027030)	ASCL3 (ENSCHIG00000004050)	TMEM9B (ENSCHIG00000019262)	NRIP3 (ENSCHIG00000020900)	SCUBE2 (ENSCHIG00000017481)	DENND5A (ENSCHIG00000013301)	ENSCHIG00000021194	TMEM41B (ENSCHIG00000016086)	IPO7 (ENSCHIG00000024527)	ZNF143 (ENSCHIG00000026822)	WEE1 (ENSCHIG00000017141)	ENSCHIG00000019629	SWAP70 (ENSCHIG00000000725)	SBF2 (ENSCHIG00000019548)	ADM (ENSCHIG00000022711)	ENSCHIG00000010925 #22	AMPD3 (ENSCHIG00000013332)	RNF141 (ENSCHIG00000014083)	LYVE1 (ENSCHIG00000025251)	IRAG1 (ENSCHIG00000025822)	ENSCHIG00000024170	CTR9 (ENSCHIG00000011919)	EIF4G2 (ENSCHIG00000017894)	ZBED5 (ENSCHIG00000011923)	GALNT18 (ENSCHIG00000012207)	USP47 (ENSCHIG00000009969)	DKK3 (ENSCHIG00000011378)	MICAL2 (ENSCHIG00000024501)	ENSCHIG00000011918	PARVA (ENSCHIG00000024855)	TEAD1 (ENSCHIG00000015300) ##12
Goat	MODERN SPECIES	9	LIN7B (ENSCHIG00000018852)	PPFIA3 (ENSCHIG00000008211)	HRC (ENSCHIG00000012285) #7	TRPM4 (ENSCHIG00000017260) #8	ENSCHIG00000010650	CD37 (ENSCHIG00000023749) #11	TEAD2 (ENSCHIG00000026187) #12	DKKL1 (ENSCHIG00000023158) #13	KASH5 (ENSCHIG00000026858) #14	PTH2 (ENSCHIG00000022486) #15	SLC17A7 (ENSCHIG00000016894) #17	PIH1D1 (ENSCHIG00000025674) #18	ALDH16A1 (ENSCHIG00000022106) #19	FLT3LG (ENSCHIG00000013222) #20	ENSCHIG00000021732 #21	RPS11 (ENSCHIG00000027213) #22	FCGRT (ENSCHIG00000024609) #23	RCN3 (ENSCHIG00000010966) #24	NOSIP (ENSCHIG00000024881) #25	PRRG2 (ENSCHIG00000023430) #26	ENSCHIG00000027043 #27	ENSCHIG00000012558 #27	RRAS (ENSCHIG00000025071) #28	SCAF1 (ENSCHIG00000019580) #29	IRF3 (ENSCHIG00000017942) #31	BCL2L12 (ENSCHIG00000014818) #32	PRMT1 (ENSCHIG00000014997) #33	ENSCHIG00000016069	CPT1C (ENSCHIG00000025275) #34	TSKS (ENSCHIG00000018371) #35	AP2A1 (ENSCHIG00000025129) #36
Bovinae	ANCESTRAL SPECIES	3	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.a.i #21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Bos	ANCESTRAL SPECIES	4	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.a.i #21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a.h.b #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Bos_a	ANCESTRAL SPECIES	16	ENSGT00940000158693.C.j #8	ENSGT00940000163157 #9	ENSGT00940000165610	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.a.i #21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a.h.b #29	ENSGT00950000183205.b.a.b.a.a.h.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36
Wild yak	MODERN SPECIES	1784														TNR (ENSBMUG00000003870)	COP1 (ENSBMUG00000003970)	ENSBMUG00000004002 #22	PAPPA2 (ENSBMUG00000004038)	ASTN1 (ENSBMUG00000004087)	BRINP2 (ENSBMUG00000004155)
Domestic yak	DUPLICATION
Domestic yak	MODERN SPECIES	5	DARS2 (ENSBGRG00000003809)	ZBTB37 (ENSBGRG00000004020)	SERPINC1 (ENSBGRG00000004062)	RC3H1 (ENSBGRG00000004088)	ENSBGRG00000004220	RABGAP1L (ENSBGRG00000004274)	ENSBGRG00000004651	ENSBGRG00000004677	CACYBP (ENSBGRG00000004812)	MRPS14 (ENSBGRG00000004938)	TNN (ENSBGRG00000005011)	KIAA0040 (ENSBGRG00000005374)	ENSBGRG00000005388	TNR (ENSBGRG00000005411)	COP1 (ENSBGRG00000005533)	ENSBGRG00000005719 #22	ENSBGRG00000005745	PAPPA2 (ENSBGRG00000005766)	ASTN1 (ENSBGRG00000005944)	BRINP2 (ENSBGRG00000006577)	SEC16B (ENSBGRG00000006615)	ENSBGRG00000006741	RASAL2 (ENSBGRG00000006798)	ENSBGRG00000006970	ENSBGRG00000006994	TEX35 (ENSBGRG00000007160)	ENSBGRG00000007255	RALGPS2 (ENSBGRG00000007367)	ANGPTL1 (ENSBGRG00000007986)	FAM20B (ENSBGRG00000008050)	TOR3A (ENSBGRG00000008187)
Domestic yak	MODERN SPECIES	12	ENSBGRG00000016207 #8	ENSBGRG00000016128 #9	ENSBGRG00000015988	SLC6A16 (ENSBGRG00000015829) #10	CD37 (ENSBGRG00000015543) #11	TEAD2 (ENSBGRG00000015338) #12	DKKL1 (ENSBGRG00000015226) #13	KASH5 (ENSBGRG00000014950) #14	PTH2 (ENSBGRG00000014887) #15	ENSBGRG00000014846 #16	SLC17A7 (ENSBGRG00000014567) #17	PIH1D1 (ENSBGRG00000014484) #18	ALDH16A1 (ENSBGRG00000014086) #19	FLT3LG (ENSBGRG00000014021) #20	ENSBGRG00000024407 #21	ENSBGRG00000024351 #22	FCGRT (ENSBGRG00000024262) #23	RCN3 (ENSBGRG00000024220) #24	ENSBGRG00000024196	NOSIP (ENSBGRG00000024116) #25	ENSBGRG00000024046 #26	ENSBGRG00000024015 #27	ENSBGRG00000023926 #27	RRAS (ENSBGRG00000023868) #28	ENSBGRG00000023836 #29	ENSBGRG00000023762 #29	IRF3 (ENSBGRG00000023684) #31	BCL2L12 (ENSBGRG00000023636) #32	PRMT1 (ENSBGRG00000023312) #33	ENSBGRG00000023243	CPT1C (ENSBGRG00000023169) #34
Bos_b	ANCESTRAL SPECIES		ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.a.i #21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a.h.b #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Cow	MODERN SPECIES	9	TRPM4 (ENSBTAG00000006139) #8	ENSBTAG00000030505 #9	ENSBTAG00000030502	SLC6A16 (ENSBTAG00000030543) #10	TEAD2 (ENSBTAG00000016349) #12	CD37 (ENSBTAG00000011421) #11	DKKL1 (ENSBTAG00000012186) #13	KASH5 (ENSBTAG00000008614) #14	PTH2 (ENSBTAG00000001062) #15	GFY (ENSBTAG00000054265) #16	SLC17A7 (ENSBTAG00000007036) #17	PIH1D1 (ENSBTAG00000016526) #18	ALDH16A1 (ENSBTAG00000000330) #19	FLT3LG (ENSBTAG00000038045) #20	RPL13A (ENSBTAG00000005296) #21	RPS11 (ENSBTAG00000013924) #22	FCGRT (ENSBTAG00000013926) #23	RCN3 (ENSBTAG00000021799) #24	NOSIP (ENSBTAG00000014450) #25	PRRG2 (ENSBTAG00000030563) #26	PRR12 (ENSBTAG00000014454) #27	ENSBTAG00000049577 #27	RRAS (ENSBTAG00000020983) #28	SCAF1 (ENSBTAG00000006612) #29	IRF3 (ENSBTAG00000006633) #31	BCL2L12 (ENSBTAG00000006638) #32	PRMT1 (ENSBTAG00000006646) #33	ENSBTAG00000049114	CPT1C (ENSBTAG00000012205) #34	TSKS (ENSBTAG00000019179) #35	AP2A1 (ENSBTAG00000019180) #36
Hybrid Bos Indicus	MODERN SPECIES	9	TRPM4 (ENSBIXG00005004722) #8	ENSBIXG00005027469 #9	ENSBIXG00005027532	SLC6A16 (ENSBIXG00005027576) #10	CD37 (ENSBIXG00005004745) #11	TEAD2 (ENSBIXG00005027736) #12	DKKL1 (ENSBIXG00005004772) #13	KASH5 (ENSBIXG00005027885) #14	PTH2 (ENSBIXG00005027930) #15	GFY (ENSBIXG00005027944) #16	SLC17A7 (ENSBIXG00005027991) #17	PIH1D1 (ENSBIXG00005028016) #18	ALDH16A1 (ENSBIXG00005028107) #19	FLT3LG (ENSBIXG00005028193) #20	ENSBIXG00005028251 #21	RPS11 (ENSBIXG00005028282) #22	FCGRT (ENSBIXG00005004878) #23	RCN3 (ENSBIXG00005028407) #24	NOSIP (ENSBIXG00005028444) #25	PRRG2 (ENSBIXG00005028454) #26	PRR12 (ENSBIXG00005028496) #27	RRAS (ENSBIXG00005028511) #28	SCAF1 (ENSBIXG00005028526) #29	IRF3 (ENSBIXG00005006544) #31	BCL2L12 (ENSBIXG00005028650) #32	PRMT1 (ENSBIXG00005028768) #33	CPT1C (ENSBIXG00005028794) #34	TSKS (ENSBIXG00005005006) #35	AP2A1 (ENSBIXG00005028858) #36	FUZ (ENSBIXG00005005035) #37	MED25 (ENSBIXG00005029006)
American bison	DUPLICATION
American bison	MODERN SPECIES	3204	TEX50 (ENSBBBG00000014893)	KLHL20 (ENSBBBG00000003672)	CENPL (ENSBBBG00000014872)	DARS2 (ENSBBBG00000014851)	ZBTB37 (ENSBBBG00000014612)	SERPINC1 (ENSBBBG00000014603)	RC3H1 (ENSBBBG00000014592)	RABGAP1L (ENSBBBG00000007217)	CACYBP (ENSBBBG00000003339)	ENSBBBG00000014428	TNN (ENSBBBG00000003322)	KIAA0040 (ENSBBBG00000003278)	ENSBBBG00000003276	TNR (ENSBBBG00000014346)	COP1 (ENSBBBG00000007454)	ENSBBBG00000001427 #22	PAPPA2 (ENSBBBG00000014249)	ASTN1 (ENSBBBG00000014224)	BRINP2 (ENSBBBG00000014194)	SEC16B (ENSBBBG00000001446)	ENSBBBG00000014162	RASAL2 (ENSBBBG00000014156)	CLEC20A (ENSBBBG00000014145)	TEX35 (ENSBBBG00000003185)	RALGPS2 (ENSBBBG00000014129)	ANGPTL1 (ENSBBBG00000003159)	FAM20B (ENSBBBG00000014086)	TOR3A (ENSBBBG00000003148)	ABL2 (ENSBBBG00000014062)	SOAT1 (ENSBBBG00000013899)	ENSBBBG00000007253
American bison	MODERN SPECIES	3201	PPFIA3 (ENSBBBG00000010537)	TRPM4 (ENSBBBG00000001824) #8	ENSBBBG00000001811 #9	ENSBBBG00000001810	SLC6A16 (ENSBBBG00000007116) #10	CD37 (ENSBBBG00000010414) #11	TEAD2 (ENSBBBG00000010398) #12	DKKL1 (ENSBBBG00000001791) #13	KASH5 (ENSBBBG00000010328) #14	PTH2 (ENSBBBG00000010316) #15	GFY (ENSBBBG00000010311) #16	SLC17A7 (ENSBBBG00000001775) #17	ALDH16A1 (ENSBBBG00000008431) #19	FLT3LG (ENSBBBG00000000042) #20	ENSBBBG00000000077 #21	RPS11 (ENSBBBG00000000112) #22	FCGRT (ENSBBBG00000000126) #23	RCN3 (ENSBBBG00000000135) #24	ENSBBBG00000007115 #25	PRRG2 (ENSBBBG00000001739) #26	PRR12 (ENSBBBG00000010246) #27	ENSBBBG00000001733 #29	ENSBBBG00000010184 #31	BCL2L12 (ENSBBBG00000010166) #32	PRMT1 (ENSBBBG00000010142) #33	ENSBBBG00000010104	CPT1C (ENSBBBG00000010097) #34	TSKS (ENSBBBG00000010082) #35	AP2A1 (ENSBBBG00000010075) #36	FUZ (ENSBBBG00000010049) #37	MED25 (ENSBBBG00000010023)
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	124	TRPM4 (ENSMMSG00000003502) #8	ENSMMSG00000003474 #9	ENSMMSG00000003446	SLC6A16 (ENSMMSG00000003421) #10	CD37 (ENSMMSG00000003382) #11	TEAD2 (ENSMMSG00000003325) #12	DKKL1 (ENSMMSG00000003310) #13	KASH5 (ENSMMSG00000003248) #14	PTH2 (ENSMMSG00000003219) #15	GFY (ENSMMSG00000003211) #16	SLC17A7 (ENSMMSG00000003183) #17	PIH1D1 (ENSMMSG00000003162) #18	ALDH16A1 (ENSMMSG00000003049) #19	ENSMMSG00000002991 #20	ENSMMSG00000002918 #21	ENSMMSG00000002892 #22	ENSMMSG00000002876 #28	FCGRT (ENSMMSG00000002863) #23	RCN3 (ENSMMSG00000002846) #24	NOSIP (ENSMMSG00000002827) #25	PRRG2 (ENSMMSG00000002800) #26	PRR12 (ENSMMSG00000002678) #27	RRAS (ENSMMSG00000002634) #28	SCAF1 (ENSMMSG00000002608) #29	IRF3 (ENSMMSG00000002560) #31	BCL2L12 (ENSMMSG00000002524) #32	ENSMMSG00000002440 #33	ENSMMSG00000002408	CPT1C (ENSMMSG00000002363) #34	TSKS (ENSMMSG00000002323) #35	AP2A1 (ENSMMSG00000002265) #36
Siberian musk deer	MODERN SPECIES	1247	GCAT (ENSMMSG00000017960)	GALR3 (ENSMMSG00000017921)	ANKRD54 (ENSMMSG00000017762)	EIF3L (ENSMMSG00000017549)	MICALL1 (ENSMMSG00000017486)	C22orf23 (ENSMMSG00000017395)	POLR2F (ENSMMSG00000017290)	SOX10 (ENSMMSG00000017263)	PICK1 (ENSMMSG00000017236)	SLC16A8 (ENSMMSG00000017176)	BAIAP2L2 (ENSMMSG00000017039)	ENSMMSG00000017006	PLA2G6 (ENSMMSG00000016959)	MAFF (ENSMMSG00000016934)	TMEM184B (ENSMMSG00000016881)	ENSMMSG00000016861 #22	CSNK1E (ENSMMSG00000016744)	KCNJ4 (ENSMMSG00000016714)	KDELR3 (ENSMMSG00000016681)	DDX17 (ENSMMSG00000016642)	DMC1 (ENSMMSG00000016408)	FAM227A (ENSMMSG00000016242)	CBY1 (ENSMMSG00000016196)	TOMM22 (ENSMMSG00000016177)	JOSD1 (ENSMMSG00000016158)	GTPBP1 (ENSMMSG00000016125)	SUN2 (ENSMMSG00000016072)	DNAL4 (ENSMMSG00000016031)	NPTXR (ENSMMSG00000015982)	CBX6 (ENSMMSG00000015947)	ENSMMSG00000015829
Siberian musk deer	MODERN SPECIES	1266							ADGRL3 (ENSMMSG00000022820)	IGFBP7 (ENSMMSG00000024272)	POLR2B (ENSMMSG00000024277)	NOA1 (ENSMMSG00000024285)	ENSMMSG00000024287	ENSMMSG00000024288	ENSMMSG00000024290	ENSMMSG00000024291	HOPX (ENSMMSG00000024293)	ENSMMSG00000024294 #22	THEGL (ENSMMSG00000024295)	ENSMMSG00000024297	SRP72 (ENSMMSG00000024300)	PAICS (ENSMMSG00000024303)	PPAT (ENSMMSG00000024306)	ENSMMSG00000024308	ENSMMSG00000024310	AASDH (ENSMMSG00000024311)	ENSMMSG00000024316	ENSMMSG00000024317	CEP135 (ENSMMSG00000024320)	EXOC1 (ENSMMSG00000024323)	EXOC1L (ENSMMSG00000024327)	NMU (ENSMMSG00000024331)	PDCL2 (ENSMMSG00000024349)
Suina	ANCESTRAL SPECIES	2	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.a.i #21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Pig	MODERN SPECIES	14	HRC (ENSSSCG00000003156) #7	TRPM4 (ENSSSCG00000022672) #8	ENSSSCG00000038264 #9	ENSSSCG00000044312	CD37 (ENSSSCG00000033849) #11	TEAD2 (ENSSSCG00000025568) #12	DKKL1 (ENSSSCG00000038579) #13	KASH5 (ENSSSCG00000003172) #14	PTH2 (ENSSSCG00000003171) #15	GFY (ENSSSCG00000035723) #16	SLC17A7 (ENSSSCG00000003170) #17	PIH1D1 (ENSSSCG00000003169) #18	ALDH16A1 (ENSSSCG00000003168) #19	FLT3LG (ENSSSCG00000034448) #20	ENSSSCG00000052671 #21	RPS11 (ENSSSCG00000003165) #22	FCGRT (ENSSSCG00000003187) #23	RCN3 (ENSSSCG00000024823) #24	NOSIP (ENSSSCG00000029154) #25	PRRG2 (ENSSSCG00000003161) #26	ENSSSCG00000032668 #27	RRAS (ENSSSCG00000003183) #28	SCAF1 (ENSSSCG00000038807) #29	IRF3 (ENSSSCG00000003178) #31	ENSSSCG00000003177	PRMT1 (ENSSSCG00000003189) #33	CPT1C (ENSSSCG00000024872) #34	TSKS (ENSSSCG00000003191) #35	AP2A1 (ENSSSCG00000003199) #36	FUZ (ENSSSCG00000003198) #37	MED25 (ENSSSCG00000003197)
Chacoan peccary	MODERN SPECIES	799	HRC (ENSCWAG00000005168) #7	TRPM4 (ENSCWAG00000005251) #8	ENSCWAG00000005322 #9	ENSCWAG00000005362	CD37 (ENSCWAG00000005412) #11	TEAD2 (ENSCWAG00000005526) #12	DKKL1 (ENSCWAG00000005622) #13	KASH5 (ENSCWAG00000005665) #14	PTH2 (ENSCWAG00000005738) #15	GFY (ENSCWAG00000005762) #16	SLC17A7 (ENSCWAG00000005787) #17	PIH1D1 (ENSCWAG00000005886) #18	ALDH16A1 (ENSCWAG00000005930) #19	FLT3LG (ENSCWAG00000006205) #20	ENSCWAG00000006241 #21	RPS11 (ENSCWAG00000006295) #22	FCGRT (ENSCWAG00000006333) #23	RCN3 (ENSCWAG00000006394) #24	NOSIP (ENSCWAG00000006413) #25	PRRG2 (ENSCWAG00000006438) #26	PRR12 (ENSCWAG00000006486) #27	RRAS (ENSCWAG00000006558) #28	SCAF1 (ENSCWAG00000006581) #29	IRF3 (ENSCWAG00000006610) #31	BCL2L12 (ENSCWAG00000006662) #32	PRMT1 (ENSCWAG00000006728) #33	ADM5 (ENSCWAG00000006802)	CPT1C (ENSCWAG00000006842) #34	TSKS (ENSCWAG00000007022) #35	AP2A1 (ENSCWAG00000007063) #36	FUZ (ENSCWAG00000007131) #37
Laurasiatheria_b	ANCESTRAL SPECIES	5	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.a.b ##21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Carnivora	ANCESTRAL SPECIES	2	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.a.b ##21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Caniformia	ANCESTRAL SPECIES	1	ENSGT00940000163157 #9	ENSGT00940000165610.b.b	ENSGT00940000165610.a	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.a.b ##21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Canidae	DUPLICATION
Canidae	DUPLICATION
Canidae	ANCESTRAL SPECIES																	ENSGT00390000002732.n.pb.a #22
Red fox	MODERN SPECIES	9	PAWR (ENSVVUG00000010028)	PPP1R12A (ENSVVUG00000010043)	OTOGL (ENSVVUG00000010103)	ENSVVUG00000010366	PTPRQ (ENSVVUG00000010403)	MYF6 (ENSVVUG00000010529)	ENSVVUG00000010537	LIN7A (ENSVVUG00000010554)	ACSS3 (ENSVVUG00000010570)	PPFIA2 (ENSVVUG00000010745)	ENSVVUG00000010950	CCDC59 (ENSVVUG00000010954)	METTL25 (ENSVVUG00000010971)	TMTC2 (ENSVVUG00000011020)	SLC6A15 (ENSVVUG00000011094)	ENSVVUG00000011115 #22	TSPAN19 (ENSVVUG00000011198)	LRRIQ1 (ENSVVUG00000011218)	ALX1 (ENSVVUG00000011346)	ENSVVUG00000011364	NTS (ENSVVUG00000011394)	MGAT4C (ENSVVUG00000011397)	ENSVVUG00000011423	C12orf50 (ENSVVUG00000011456)	C12orf29 (ENSVVUG00000011487)	CEP290 (ENSVVUG00000011505)	TMTC3 (ENSVVUG00000011546)	KITLG (ENSVVUG00000011565)	DUSP6 (ENSVVUG00000011620)	ENSVVUG00000011627	ENSVVUG00000011636
Canidae	ANCESTRAL SPECIES	37	ENSGT00940000161768.A.f.b	ENSGT00940000161322	ENSGT00390000012726	ENSGT00950000182857.a.a.b.a.r.b.g.b.b.e.a	ENSGT00940000162451	ENSGT00940000157297	ENSGT00940000157996	ENSGT00390000014020	ENSGT00940000157196	ENSGT00940000160111	ENSGT00940000159999	ENSGT00940000165796	ENSGT00390000008142	ENSGT00940000153737.a	ENSGT00940000161870	ENSGT00390000002732.n.pb.b #22	ENSGT00940000156455	ENSGT00940000160863	ENSGT00940000162128	ENSGT00940000159471	ENSGT01060000248564.b.b	ENSGT00890000139472	ENSGT00680000100018.a.b	ENSGT00390000006788.a.a	ENSGT00940000153904.b	ENSGT01100000263478.b.a.a	ENSGT01090000260024.A.a.b.b	ENSGT01100000263574.b.i.a	ENSGT00940000157904.d	ENSGT00940000158972	ENSGT00940000157245
Canis_lupus	ANCESTRAL SPECIES	22	ENSGT00940000161322.n	ENSGT01030000234626.A.b.bb.a	ENSGT00390000012726	ENSGT00950000182857.a.a.b.a.r.b.g.b.b.e.a	ENSGT00940000162451	ENSGT00940000157297	ENSGT00940000157996	ENSGT00390000014020	ENSGT00940000157196	ENSGT00940000160111	ENSGT00940000159999	ENSGT00940000165796	ENSGT00390000008142	ENSGT00940000153737.a	ENSGT00940000161870	ENSGT00390000002732.n.pb.b #22	ENSGT00940000156455	ENSGT00940000160863	ENSGT00940000162128	ENSGT00940000159471	ENSGT01060000248564.b.b	ENSGT00890000139472	ENSGT00680000100018.a.b	ENSGT00390000006788.a.a	ENSGT00940000153904.b	ENSGT01100000263478.b.a.a	ENSGT00390000005922.b.d.b.a.i.b	ENSGT01100000263574.b.i.a	ENSGT00940000157904.d	ENSGT00940000158972	ENSGT00940000157245
Dingo	MODERN SPECIES	347	ENSCAFG00020001820	ENSCAFG00020001813	ACTRT1 (ENSCAFG00020001806)	ENSCAFG00020001796	ENSCAFG00020001783	SMARCA1 (ENSCAFG00020001751)	OCRL (ENSCAFG00020001626)	APLN (ENSCAFG00020001584)	XPNPEP2 (ENSCAFG00020001538)	SASH3 (ENSCAFG00020001524)	ZDHHC9 (ENSCAFG00020001516)	ENSCAFG00020001508	ENSCAFG00020001499	ENSCAFG00020001479	ELF4 (ENSCAFG00020001458)	ENSCAFG00020001440 #22	AIFM1 (ENSCAFG00020001426)	RAB33A (ENSCAFG00020001403)	ZNF280C (ENSCAFG00020001255)	SLC25A14 (ENSCAFG00020001088)	GPR119 (ENSCAFG00020001070)	RBMX2 (ENSCAFG00020001063)	ENSCAFG00020001039	ENOX2 (ENSCAFG00020000943)	ARHGAP36 (ENSCAFG00020000912)	IGSF1 (ENSCAFG00020000850)	ENSCAFG00020000826	STK26 (ENSCAFG00020000768)	FRMD7 (ENSCAFG00020000739)	RAP2C (ENSCAFG00020000728)	MBNL3 (ENSCAFG00020000653)
Dog	MODERN SPECIES	144	ENSCAFG00845030952	ENSCAFG00845030957	PRR32 (ENSCAFG00845030958)	ENSCAFG00845030965	ENSCAFG00845030970	SMARCA1 (ENSCAFG00845030980)	OCRL (ENSCAFG00845030998)	APLN (ENSCAFG00845031008)	XPNPEP2 (ENSCAFG00845031010)	SASH3 (ENSCAFG00845031013)	ZDHHC9 (ENSCAFG00845031015)	ENSCAFG00845031016	ENSCAFG00845031018	BCORL1 (ENSCAFG00845031020)	ELF4 (ENSCAFG00845031025)	ENSCAFG00845031027 #22	AIFM1 (ENSCAFG00845031031)	RAB33A (ENSCAFG00845031035)	ZNF280C (ENSCAFG00845031036)	SLC25A14 (ENSCAFG00845031040)	GPR119 (ENSCAFG00845031046)	RBMX2 (ENSCAFG00845031049)	ENSCAFG00845031056	ENOX2 (ENSCAFG00845031064)	ARHGAP36 (ENSCAFG00845031067)	IGSF1 (ENSCAFG00845031072)	ENSCAFG00845031076	ENSCAFG00845031078	STK26 (ENSCAFG00845031083)	FRMD7 (ENSCAFG00845031084)	RAP2C (ENSCAFG00845031086)
Red fox	MODERN SPECIES	146	DCAF12L2 (ENSVVUG00000008845)	PRR32 (ENSVVUG00000008849)	ENSVVUG00000008859	ACTRT1 (ENSVVUG00000008865)	ENSVVUG00000008872	SMARCA1 (ENSVVUG00000008878)	OCRL (ENSVVUG00000008897)	APLN (ENSVVUG00000008912)	XPNPEP2 (ENSVVUG00000008919)	SASH3 (ENSVVUG00000008926)	ZDHHC9 (ENSVVUG00000008927)	ENSVVUG00000008936	UTP14A (ENSVVUG00000008939)	BCORL1 (ENSVVUG00000008947)	ELF4 (ENSVVUG00000008977)	ENSVVUG00000008982 #22	AIFM1 (ENSVVUG00000008984)	RAB33A (ENSVVUG00000008988)	ZNF280C (ENSVVUG00000008995)	SLC25A14 (ENSVVUG00000009023)	GPR119 (ENSVVUG00000009055)	RBMX2 (ENSVVUG00000009059)	ENSVVUG00000009068	ENOX2 (ENSVVUG00000009084)
Canidae	ANCESTRAL SPECIES	5	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610.b.b	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.b.b ##21	ENSGT00390000002732.n.qb #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Red fox	MODERN SPECIES	101	TRPM4 (ENSVVUG00000022792) #8	ENSVVUG00000022776	ENSVVUG00000022736 #9	ENSVVUG00000022751	ENSVVUG00000022716 #11	TEAD2 (ENSVVUG00000022680) #12	DKKL1 (ENSVVUG00000022674) #13	KASH5 (ENSVVUG00000022642) #14	PTH2 (ENSVVUG00000022641) #15	GFY (ENSVVUG00000022640) #16	SLC17A7 (ENSVVUG00000022638) #17	PIH1D1 (ENSVVUG00000022633) #18	ALDH16A1 (ENSVVUG00000022622) #19	FLT3LG (ENSVVUG00000022614) #20	RPL13A (ENSVVUG00000022597) ##21	RPS11 (ENSVVUG00000022590) #22	FCGRT (ENSVVUG00000022578) #23	RCN3 (ENSVVUG00000022571) #24	PRRG2 (ENSVVUG00000022563) #26	NOSIP (ENSVVUG00000022560) #25	PRR12 (ENSVVUG00000022528) #27	RRAS (ENSVVUG00000022504) #28	SCAF1 (ENSVVUG00000022453) #29	IRF3 (ENSVVUG00000022435) #31	BCL2L12 (ENSVVUG00000022403) #32	PRMT1 (ENSVVUG00000021435) #33	ADM5 (ENSVVUG00000021360)	CPT1C (ENSVVUG00000021351) #34	TSKS (ENSVVUG00000021336) #35	AP2A1 (ENSVVUG00000021313) #36	FUZ (ENSVVUG00000021304) #37
Canis_lupus	ANCESTRAL SPECIES		ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610.b.b	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.b.b ##21	ENSGT00390000002732.n.qb #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Dingo	MODERN SPECIES	125	TRPM4 (ENSCAFG00020025292) #8	ENSCAFG00020025227 #9	ENSCAFG00020025218	ENSCAFG00020025214	SLC6A16 (ENSCAFG00020025199) #10	CD37 (ENSCAFG00020025183) #11	TEAD2 (ENSCAFG00020025163) #12	DKKL1 (ENSCAFG00020025159) #13	KASH5 (ENSCAFG00020025136) #14	PTH2 (ENSCAFG00020025128) #15	GFY (ENSCAFG00020025126) #16	SLC17A7 (ENSCAFG00020025100) #17	PIH1D1 (ENSCAFG00020025087) #18	ALDH16A1 (ENSCAFG00020024960) #19	ENSCAFG00020024917 ##21	RPS11 (ENSCAFG00020024909) #22	FCGRT (ENSCAFG00020024896) #23	RCN3 (ENSCAFG00020024895) #24	NOSIP (ENSCAFG00020024889) #25	PRRG2 (ENSCAFG00020024886) #26	ENSCAFG00020024885 #27	ENSCAFG00020024884 #27	RRAS (ENSCAFG00020024879) #28	ENSCAFG00020024859 #29	IRF3 (ENSCAFG00020024853) #31	BCL2L12 (ENSCAFG00020024844) #32	PRMT1 (ENSCAFG00020024443) #33	ADM5 (ENSCAFG00020024378)	CPT1C (ENSCAFG00020023872) #34	TSKS (ENSCAFG00020023817) #35	AP2A1 (ENSCAFG00020023376) #36
Dog	DUPLICATION
Dog	MODERN SPECIES	2	NPR2 (ENSCAFG00845009777)	MSMP (ENSCAFG00845009707)	RGP1 (ENSCAFG00845009657)	GBA2 (ENSCAFG00845009561)	CREB3 (ENSCAFG00845009477)	TLN1 (ENSCAFG00845009262)	TPM2 (ENSCAFG00845009024)	CA9 (ENSCAFG00845008914)	ARHGEF39 (ENSCAFG00845008765)	CCDC107 (ENSCAFG00845008499)	SIT1 (ENSCAFG00845008405)	CD72 (ENSCAFG00845008349)	TESK1 (ENSCAFG00845008265)	FAM166B (ENSCAFG00845008219)	RUSC2 (ENSCAFG00845008154)	ENSCAFG00845008095 #22	ENSCAFG00845007992	UNC13B (ENSCAFG00845006572)	FAM214B (ENSCAFG00845006129)	STOML2 (ENSCAFG00845006030)	PIGO (ENSCAFG00845005874)	FANCG (ENSCAFG00845005691)	VCP (ENSCAFG00845005647)	ENSCAFG00845005597	ENSCAFG00845005578	DNAJB5 (ENSCAFG00845005536)	ENSCAFG00845005505	ENSCAFG00845005494	PHF24 (ENSCAFG00845005480)	ENSCAFG00845005432	ENSCAFG00845005403
Dog	MODERN SPECIES		ENSCAFG00845000224 #9	ENSCAFG00845000207	SLC6A16 (ENSCAFG00845000203) #10	TRPM4 (ENSCAFG00845000181) #8	ENSCAFG00845000143 #11	TEAD2 (ENSCAFG00845000111) #12	DKKL1 (ENSCAFG00845000090) #13	KASH5 (ENSCAFG00845025192) #14	PTH2 (ENSCAFG00845025155) #15	GFY (ENSCAFG00845025048) #16	SLC17A7 (ENSCAFG00845024908) #17	PIH1D1 (ENSCAFG00845024664) #18	ALDH16A1 (ENSCAFG00845024360) #19	FLT3LG (ENSCAFG00845024253) #20	RPL13A (ENSCAFG00845024086) ##21	RPS11 (ENSCAFG00845023961) #22	FCGRT (ENSCAFG00845023878) #23	RCN3 (ENSCAFG00845023834) #24	NOSIP (ENSCAFG00845023744) #25	PRRG2 (ENSCAFG00845023671) #26	PRR12 (ENSCAFG00845023579) #27	RRAS (ENSCAFG00845023497) #28	SCAF1 (ENSCAFG00845023416) #29	IRF3 (ENSCAFG00845023315) #31	BCL2L12 (ENSCAFG00845023183) #32	PRMT1 (ENSCAFG00845022617) #33	ADM5 (ENSCAFG00845022542)	CPT1C (ENSCAFG00845022213) #34	TSKS (ENSCAFG00845022049) #35	AP2A1 (ENSCAFG00845021617) #36	FUZ (ENSCAFG00845021309) #37
Caniformia_b	ANCESTRAL SPECIES	2	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610.a	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.a.b ##21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Ursidae	ANCESTRAL SPECIES	30	ENSGT00940000165610.b.b	ENSGT00940000165610.a	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.a.b ##21	ENSGT00390000010799.u.b.a.b.b ##21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700.qc.b #33	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Ursus	ANCESTRAL SPECIES	13	ENSGT01050000244900.a.b	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610.a	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.b.b ##21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700.qc.b #33	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Polar bear	MODERN SPECIES	115	HRC (ENSUMAG00000001563) #7	TRPM4 (ENSUMAG00000001580) #8	ENSUMAG00000001616 #9	ENSUMAG00000001624	SLC6A16 (ENSUMAG00000001659) #10	ENSUMAG00000001689	CD37 (ENSUMAG00000001698) #11	TEAD2 (ENSUMAG00000001746) #12	DKKL1 (ENSUMAG00000001841) #13	KASH5 (ENSUMAG00000001846) #14	SLC17A7 (ENSUMAG00000001869) #17	PIH1D1 (ENSUMAG00000001943) #18	ALDH16A1 (ENSUMAG00000001975) #19	FLT3LG (ENSUMAG00000002372) #20	ENSUMAG00000002385 ##21	RPS11 (ENSUMAG00000002394) #22	FCGRT (ENSUMAG00000002401) #23	RCN3 (ENSUMAG00000002431) #24	ENSUMAG00000002445 #25	ENSUMAG00000002454 #27	RRAS (ENSUMAG00000002464) #28	ENSUMAG00000002553 #29	IRF3 (ENSUMAG00000002587) #31	BCL2L12 (ENSUMAG00000002590) #32	PRMT1 (ENSUMAG00000002599) #33	ENSUMAG00000002609	CPT1C (ENSUMAG00000002617) #34	TSKS (ENSUMAG00000002694) #35	AP2A1 (ENSUMAG00000003074) #36	FUZ (ENSUMAG00000007031) #37	MED25 (ENSUMAG00000007065)
American black bear	MODERN SPECIES	257						CD37 (ENSUAMG00000007455) #11	TEAD2 (ENSUAMG00000007459) #12	DKKL1 (ENSUAMG00000007466) #13	PTH2 (ENSUAMG00000007473) #15	GFY (ENSUAMG00000007474) #16	SLC17A7 (ENSUAMG00000007476) #17	PIH1D1 (ENSUAMG00000007477) #18	ALDH16A1 (ENSUAMG00000007491) #19	FLT3LG (ENSUAMG00000008435) #20	ENSUAMG00000008438 ##21	RPS11 (ENSUAMG00000008447) #22	FCGRT (ENSUAMG00000008455) #23	RCN3 (ENSUAMG00000008459) #24
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	1091																ENSAMEG00000024090 #22
Giant Panda	MODERN SPECIES	1149																ENSAMEG00000020076 #22
Giant Panda	MODERN SPECIES	3	HRC (ENSAMEG00000014363) #7	TRPM4 (ENSAMEG00000014295) #8	ENSAMEG00000014292 #9	ENSAMEG00000028170	SLC6A16 (ENSAMEG00000014233) #10	ENSAMEG00000014224 #11	TEAD2 (ENSAMEG00000014183) #12	DKKL1 (ENSAMEG00000014181) #13	KASH5 (ENSAMEG00000014168) #14	GFY (ENSAMEG00000023614) #16	SLC17A7 (ENSAMEG00000014111) #17	PIH1D1 (ENSAMEG00000014098) #18	ALDH16A1 (ENSAMEG00000014055) #19	ENSAMEG00000014041 #20	RPL13A (ENSAMEG00000014027) ##21	RPS11 (ENSAMEG00000014020) #22	ENSAMEG00000013998 #23	NOSIP (ENSAMEG00000013962) #25	RCN3 (ENSAMEG00000013976) #24	ENSAMEG00000013954 #26	PRR12 (ENSAMEG00000029999) #27	RRAS (ENSAMEG00000013931) #28	ENSAMEG00000013914 #29	IRF3 (ENSAMEG00000013892) #31	BCL2L12 (ENSAMEG00000013888) #32	PRMT1 (ENSAMEG00000013871) #33	ENSAMEG00000026436	CPT1C (ENSAMEG00000013819) #34	TSKS (ENSAMEG00000013807) #35	AP2A1 (ENSAMEG00000013743) #36	FUZ (ENSAMEG00000013731) #37
Giant Panda	MODERN SPECIES	1036																ENSAMEG00000024990 #22
Mustelinae	ANCESTRAL SPECIES	7	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610.a	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.a.b ##21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Ferret	MODERN SPECIES	291	PPFIA3 (ENSMPUG00000003043)	HRC (ENSMPUG00000003039) #7	TRPM4 (ENSMPUG00000003021) #8	ENSMPUG00000002762	ENSMPUG00000002758	CD37 (ENSMPUG00000002710) #11	TEAD2 (ENSMPUG00000002689) #12	DKKL1 (ENSMPUG00000002681) #13	KASH5 (ENSMPUG00000002672) #14	GFY (ENSMPUG00000019362) #16	SLC17A7 (ENSMPUG00000002665) #17	PIH1D1 (ENSMPUG00000002657) #18	ALDH16A1 (ENSMPUG00000002650) #19	FLT3LG (ENSMPUG00000002613) #20	RPL13A (ENSMPUG00000002604) ##21	RPS11 (ENSMPUG00000002599) #22	FCGRT (ENSMPUG00000002596) #23	RCN3 (ENSMPUG00000002591) #24	NOSIP (ENSMPUG00000002583) #25	PRRG2 (ENSMPUG00000002578) #26	PRR12 (ENSMPUG00000002538) #27	RRAS (ENSMPUG00000002515) #28	SCAF1 (ENSMPUG00000002481) #29	IRF3 (ENSMPUG00000002477) #31	BCL2L12 (ENSMPUG00000002461) #32	PRMT1 (ENSMPUG00000002401) #33	CPT1C (ENSMPUG00000002399) #34	TSKS (ENSMPUG00000002382) #35	AP2A1 (ENSMPUG00000002373) #36	FUZ (ENSMPUG00000002370) #37	MED25 (ENSMPUG00000002366)
American mink	MODERN SPECIES	135	ENSNVIG00000013162 #9	ENSNVIG00000013174	SLC6A16 (ENSNVIG00000013206) #10	ENSNVIG00000013237	CD37 (ENSNVIG00000013249) #11	TEAD2 (ENSNVIG00000013313) #12	DKKL1 (ENSNVIG00000013406) #13	KASH5 (ENSNVIG00000013426) #14	PTH2 (ENSNVIG00000013459) #15	GFY (ENSNVIG00000013465) #16	SLC17A7 (ENSNVIG00000013475) #17	PIH1D1 (ENSNVIG00000013493) #18	A16A1 (ENSNVIG00000013514) #19	FLT3LG (ENSNVIG00000013636) #20	RPL13A (ENSNVIG00000013662) ##21	RPS11 (ENSNVIG00000013696) #22	FCGRT (ENSNVIG00000013729) #23	RCN3 (ENSNVIG00000013791) #24	NOSIP (ENSNVIG00000013805) #25	TMG2 (ENSNVIG00000013836) #26	PRR12 (ENSNVIG00000013877) #27	RRAS (ENSNVIG00000013892) #28	SCAF1 (ENSNVIG00000013902) #29	IRF3 (ENSNVIG00000013916) #31	BCL2L12 (ENSNVIG00000013961) #32	PRMT1 (ENSNVIG00000013974) #33	ENSNVIG00000014029	CPT1C (ENSNVIG00000014042) #34	ENSNVIG00000014121	TSKS (ENSNVIG00000014153) #35	AP2A1 (ENSNVIG00000014173) #36
Felidae	DUPLICATION
Felidae	DUPLICATION
Felidae	ANCESTRAL SPECIES																	ENSGT00390000002732.n.vb.a #22
Panthera	ANCESTRAL SPECIES																	ENSGT00390000002732.n.vb.a #22
Panthera_a	ANCESTRAL SPECIES	12	ENSGT00390000006088	ENSGT00390000004984	ENSGT00940000159081	ENSGT00950000182885.B	ENSGT00940000156566	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00390000007685	ENSGT00390000000987	ENSGT00940000158078	ENSGT00940000160733	ENSGT00940000154917	ENSGT00940000160180	ENSGT00940000159167	ENSGT00950000183042.a.b	ENSGT00390000002732.n.vb.a #22	ENSGT00940000153889.e.b	ENSGT00390000000376	ENSGT00940000158018	ENSGT00390000002524	ENSGT00940000158319	ENSGT00610000087444	ENSGT00940000157255	ENSGT00390000015968	ENSGT00940000157835	ENSGT00950000183132.A	ENSGT01050000244879.b.a.b.a	ENSGT00390000014700.a	ENSGT00390000013899.a.a	ENSGT00530000063817.b	ENSGT00940000155455
leopard	MODERN SPECIES	13	PMCH (ENSPPRG00000001052)	IGF1 (ENSPPRG00000000922)	PAH (ENSPPRG00000022926)	STAB2 (ENSPPRG00000023837)	NT5DC3 (ENSPPRG00000018102)	HSP90B1 (ENSPPRG00000014461)	UQCC6 (ENSPPRG00000013349)	TDG (ENSPPRG00000013124)	GLT8D2 (ENSPPRG00000012524)	HCFC2 (ENSPPRG00000011330)	NFYB (ENSPPRG00000010826)	TXNRD1 (ENSPPRG00000010028)	ENSPPRG00000004363	ENSPPRG00000004168	SLC41A2 (ENSPPRG00000004007)	ENSPPRG00000015202 #22	ENSPPRG00000003400	NOPCHAP1 (ENSPPRG00000003272)	ALDH1L2 (ENSPPRG00000003194)	WASHC4 (ENSPPRG00000003069)	APPL2 (ENSPPRG00000000703)	C12orf75 (ENSPPRG00000022693)	NUAK1 (ENSPPRG00000014460)	ENSPPRG00000013296	ENSPPRG00000012657	TCP11L2 (ENSPPRG00000012496)	POLR3B (ENSPPRG00000012076)	RFX4 (ENSPPRG00000011565)	RIC8B (ENSPPRG00000009882)	TMEM263 (ENSPPRG00000009078)	MTERF2 (ENSPPRG00000015020)
lion	MODERN SPECIES	7	PMCH (ENSPLOG00000020209)	IGF1 (ENSPLOG00000020253)	PAH (ENSPLOG00000020332)	STAB2 (ENSPLOG00000020621)	NT5DC3 (ENSPLOG00000020837)	ENSPLOG00000020955	ENSPLOG00000021063	UQCC6 (ENSPLOG00000021114)	TDG (ENSPLOG00000021131)	GLT8D2 (ENSPLOG00000021181)	HCFC2 (ENSPLOG00000021251)	NFYB (ENSPLOG00000021286)	TXNRD1 (ENSPLOG00000021406)	CHST11 (ENSPLOG00000021502)	SLC41A2 (ENSPLOG00000021528)	ENSPLOG00000021549 #22	ENSPLOG00000021564	NOPCHAP1 (ENSPLOG00000021588)	ALDH1L2 (ENSPLOG00000021623)	WASHC4 (ENSPLOG00000021702)	APPL2 (ENSPLOG00000021757)	ENSPLOG00000021789	ENSPLOG00000021828	NUAK1 (ENSPLOG00000021840)	CKAP4 (ENSPLOG00000021865)	TCP11L2 (ENSPLOG00000021880)	POLR3B (ENSPLOG00000021928)	RFX4 (ENSPLOG00000022021)	RIC8B (ENSPLOG00000022104)	ENSPLOG00000022146	TMEM263 (ENSPLOG00000022158)
Cat	MODERN SPECIES	238	IGF1 (ENSFCAG00000024009)	PAH (ENSFCAG00000008519)	ASCL1 (ENSFCAG00000008250)	ENSFCAG00000048583	STAB2 (ENSFCAG00000007290)	NT5DC3 (ENSFCAG00000019230)	HSP90B1 (ENSFCAG00000014077)	UQCC6 (ENSFCAG00000014078)	TDG (ENSFCAG00000014079)	GLT8D2 (ENSFCAG00000029578)	HCFC2 (ENSFCAG00000014081)	NFYB (ENSFCAG00000026471)	TXNRD1 (ENSFCAG00000003645)	CHST11 (ENSFCAG00000034483)	SLC41A2 (ENSFCAG00000018522)	ENSFCAG00000024200 #22	CB4H12orf45 (ENSFCAG00000039522)	ALDH1L2 (ENSFCAG00000001459)	WASHC4 (ENSFCAG00000001460)	APPL2 (ENSFCAG00000001461)	ENSFCAG00000053109	NUAK1 (ENSFCAG00000046248)	CKAP4 (ENSFCAG00000034811)	TCP11L2 (ENSFCAG00000013633)	POLR3B (ENSFCAG00000015617)	RFX4 (ENSFCAG00000015618)	RIC8B (ENSFCAG00000023932)	TMEM263 (ENSFCAG00000028960)	MTERF2 (ENSFCAG00000030683)	CRY1 (ENSFCAG00000028263)	BTBD11 (ENSFCAG00000010776)
Felidae	ANCESTRAL SPECIES																	ENSGT00390000002732.n.vb.b #22
Panthera	ANCESTRAL SPECIES																	ENSGT00390000002732.n.vb.b #22
Panthera_a	ANCESTRAL SPECIES																	ENSGT00390000002732.n.vb.b #22
leopard	MODERN SPECIES	5	ENSPPRG00000017612	SOX14 (ENSPPRG00000016124)	IL20RB (ENSPPRG00000020247)	NCK1 (ENSPPRG00000023991)	ENSPPRG00000016154	ENSPPRG00000023730	SLC35G2 (ENSPPRG00000016217)	ENSPPRG00000000098	ENSPPRG00000002338	ENSPPRG00000003051	PCCB (ENSPPRG00000005478)	MSL2 (ENSPPRG00000006654)	PPP2R3A (ENSPPRG00000007652)	EPHB1 (ENSPPRG00000009661)	KY (ENSPPRG00000010719)	ENSPPRG00000016728 #22	CEP63 (ENSPPRG00000016549)	ANAPC13 (ENSPPRG00000019992)	AMOTL2 (ENSPPRG00000021975)	RYK (ENSPPRG00000024286)	SLCO2A1 (ENSPPRG00000023617)	RAB6B (ENSPPRG00000023437)	SRPRB (ENSPPRG00000023305)	TF (ENSPPRG00000022859)	ENSPPRG00000015818	TOPBP1 (ENSPPRG00000024306)	ENSPPRG00000000178	BFSP2 (ENSPPRG00000000592)	TMEM108 (ENSPPRG00000001338)	NPHP3 (ENSPPRG00000002115)	UBA5 (ENSPPRG00000003792)
Felidae	ANCESTRAL SPECIES	7	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.a #21	ENSGT00390000002732.n.wb #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Cat	MODERN SPECIES	246	HRC (ENSFCAG00000038379) #7	TRPM4 (ENSFCAG00000000257) #8	ENSFCAG00000027004 #9	ENSFCAG00000003914	CD37 (ENSFCAG00000001261) #11	TEAD2 (ENSFCAG00000001523) #12	DKKL1 (ENSFCAG00000032008) #13	KASH5 (ENSFCAG00000001524) #14	PTH2 (ENSFCAG00000001525) #15	GFY (ENSFCAG00000040325) #16	SLC17A7 (ENSFCAG00000023749) #17	PIH1D1 (ENSFCAG00000009191) #18	ALDH16A1 (ENSFCAG00000009193) #19	FLT3LG (ENSFCAG00000030375) #20	RPL13A (ENSFCAG00000009194) ##21	RPS11 (ENSFCAG00000009196) #22	FCGRT (ENSFCAG00000009199) #23	RCN3 (ENSFCAG00000000028) #24	NOSIP (ENSFCAG00000010497) #25	PRRG2 (ENSFCAG00000010498) #26	PRR12 (ENSFCAG00000025376) #27	RRAS (ENSFCAG00000024840) #28	SCAF1 (ENSFCAG00000045933) #29	IRF3 (ENSFCAG00000006074) #31	BCL2L12 (ENSFCAG00000034454) #32	PRMT1 (ENSFCAG00000006081) #33	ENSFCAG00000029354	CPT1C (ENSFCAG00000006084) #34	TSKS (ENSFCAG00000004426) #35	AP2A1 (ENSFCAG00000004429) #36	FUZ (ENSFCAG00000004433) #37
Panthera	ANCESTRAL SPECIES	20	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.a #21	ENSGT00390000002732.n.wb #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Tiger	MODERN SPECIES	36	ENSPTIG00000018250	LIN7B (ENSPTIG00000018805)	ENSPTIG00000019132	ENSPTIG00000020399	TRPM4 (ENSPTIG00000006518) #8	CD37 (ENSPTIG00000011428) #11	TEAD2 (ENSPTIG00000012740) #12	DKKL1 (ENSPTIG00000017248) #13	KASH5 (ENSPTIG00000017807) #14	GFY (ENSPTIG00000018230) #16	SLC17A7 (ENSPTIG00000019109) #17	PIH1D1 (ENSPTIG00000019309) #18	ALDH16A1 (ENSPTIG00000020037) #19	ENSPTIG00000021950 #20	ENSPTIG00000022003 #21	RPS11 (ENSPTIG00000002272) #22	FCGRT (ENSPTIG00000004003) #23	RCN3 (ENSPTIG00000007038) #24	ENSPTIG00000007453 #25	PRRG2 (ENSPTIG00000007792) #26	ENSPTIG00000008236 #27	RRAS (ENSPTIG00000011339) #28	ENSPTIG00000011785 #29	IRF3 (ENSPTIG00000012537) #31	ENSPTIG00000017895 #32	PRMT1 (ENSPTIG00000019080) #33	ENSPTIG00000020152	CPT1C (ENSPTIG00000020349) #34	TSKS (ENSPTIG00000006061) #35	ENSPTIG00000007548 #36	FUZ (ENSPTIG00000007760) #37
Panthera_a	ANCESTRAL SPECIES	22	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.b ##21	ENSGT00390000002732.n.wb #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
lion	MODERN SPECIES	15	HRC (ENSPLOG00000010980) #7	TRPM4 (ENSPLOG00000011141) #8	ENSPLOG00000011551 #9	ENSPLOG00000011613	CD37 (ENSPLOG00000011803) #11	TEAD2 (ENSPLOG00000011911) #12	DKKL1 (ENSPLOG00000012339) #13	KASH5 (ENSPLOG00000005429) #14	PTH2 (ENSPLOG00000005562) #15	GFY (ENSPLOG00000005581) #16	SLC17A7 (ENSPLOG00000005616) #17	PIH1D1 (ENSPLOG00000005668) #18	ALDH16A1 (ENSPLOG00000005728) #19	FLT3LG (ENSPLOG00000005848) #20	ENSPLOG00000005914 ##21	RPS11 (ENSPLOG00000006028) #22	FCGRT (ENSPLOG00000006103) #23	RCN3 (ENSPLOG00000006156) #24	CYP2S1 (ENSPLOG00000006185)	AXL (ENSPLOG00000006282)	HNRNPUL1 (ENSPLOG00000006494)	CCDC97 (ENSPLOG00000006566)	TGFB1 (ENSPLOG00000006598)	B9D2 (ENSPLOG00000006618)	TMEM91 (ENSPLOG00000006632)	EXOSC5 (ENSPLOG00000006679)	BCKDHA (ENSPLOG00000006715)	B3GNT8 (ENSPLOG00000006750)	DMAC2 (ENSPLOG00000006789)	ENSPLOG00000006846	ENSPLOG00000006902
leopard	MODERN SPECIES	103	LIN7B (ENSPPRG00000006579)	PPFIA3 (ENSPPRG00000012416)	HRC (ENSPPRG00000013719) #7	TRPM4 (ENSPPRG00000022997) #8	CD37 (ENSPPRG00000000274) #11	TEAD2 (ENSPPRG00000003644) #12	DKKL1 (ENSPPRG00000004043) #13	KASH5 (ENSPPRG00000005628) #14	PTH2 (ENSPPRG00000006087) #15	GFY (ENSPPRG00000006208) #16	SLC17A7 (ENSPPRG00000007058) #17	PIH1D1 (ENSPPRG00000007680) #18	ALDH16A1 (ENSPPRG00000009904) #19	FLT3LG (ENSPPRG00000010392) #20	ENSPPRG00000011265 ##21	RPS11 (ENSPPRG00000012091) #22	FCGRT (ENSPPRG00000013062) #23	RCN3 (ENSPPRG00000013222) #24	NOSIP (ENSPPRG00000014345) #25	PRRG2 (ENSPPRG00000015395) #26	RRAS (ENSPPRG00000020676) #28	SCAF1 (ENSPPRG00000023162) #29	IRF3 (ENSPPRG00000003901) #31	BCL2L12 (ENSPPRG00000006198) #32	PRMT1 (ENSPPRG00000007371) #33	ENSPPRG00000008136 #33	ENSPPRG00000008239	CPT1C (ENSPPRG00000009392) #34	TSKS (ENSPPRG00000010063) #35	AP2A1 (ENSPPRG00000012521) #36	FUZ (ENSPPRG00000015640) #37
Laurasiatheria_c	ANCESTRAL SPECIES	4	ENSGT00940000163157 #9	ENSGT00940000165610	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.a.b ##21	ENSGT00390000010799.u.a #21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B.p.a #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Equus	ANCESTRAL SPECIES	1	ENSGT00940000165610	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.a.b ##21	ENSGT00390000002732.m.a ##22	ENSGT00390000010799.u.b.a.a.a.b ##21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B.p.a #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37
Donkey	MODERN SPECIES	18	TRPM4 (ENSEASG00005004950) #8	ENSEASG00005031538 #9	ENSEASG00005004960	SLC6A16 (ENSEASG00005004965) #10	ENSEASG00005004967 #11	TEAD2 (ENSEASG00005004969) #12	DKKL1 (ENSEASG00005004970) #13	KASH5 (ENSEASG00005004979) #14	PTH2 (ENSEASG00005004989) #15	GFY (ENSEASG00005004992) #16	SLC17A7 (ENSEASG00005004995) #17	PIH1D1 (ENSEASG00005004996) #18	ALDH16A1 (ENSEASG00005004997) #19	ENSEASG00005005002 #20	ENSEASG00005005007 ##21	RPS11 (ENSEASG00005034777) #22	FCGRT (ENSEASG00005005020) #23	RCN3 (ENSEASG00005005046) #24	NOSIP (ENSEASG00005005049) #25	PRRG2 (ENSEASG00005005054) #26	ENSEASG00005037867 #27	ENSEASG00005035361 #27	RRAS (ENSEASG00005005083) #28	SCAF1 (ENSEASG00005005102) #29	IRF3 (ENSEASG00005005140) #31	BCL2L12 (ENSEASG00005005229) #32	PRMT1 (ENSEASG00005005297) #33	ENSEASG00005030277	CPT1C (ENSEASG00005005975) #34	TSKS (ENSEASG00005026212) #35	AP2A1 (ENSEASG00005006948) #36
Chiroptera	ANCESTRAL SPECIES	16	ENSGT00940000158693.C #8	ENSGT00940000165610	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.a.b ##21	ENSGT00390000010799.u.a #21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B.p.a #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37	ENSGT00940000160439
Microchiroptera	ANCESTRAL SPECIES	18	ENSGT00940000158693.C #8	ENSGT00940000165610	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.a.b ##21	ENSGT00390000010799.u.a #21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B.p.a #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37	ENSGT00940000160439
Microbat	MODERN SPECIES	2205												SLC17A7 (ENSMLUG00000009945) #17	PIH1D1 (ENSMLUG00000004914) #18	ALDH16A1 (ENSMLUG00000004927) #19	ENSMLUG00000004945 #21	RPS11 (ENSMLUG00000030475) #22
Greater horseshoe bat	DUPLICATION
Greater horseshoe bat	MODERN SPECIES	10	ENSRFEG00010017006	TWSG1 (ENSRFEG00010017042)	ENSRFEG00010017125	ANKRD12 (ENSRFEG00010017178)	NDUFV2 (ENSRFEG00010017276)	ENSRFEG00010017327	ENSRFEG00010010493	RAB12 (ENSRFEG00010010724)	PTPRM (ENSRFEG00010010873)	LRRC30 (ENSRFEG00010011243)	LAMA1 (ENSRFEG00010011271)	ARHGAP28 (ENSRFEG00010011354)	ENSRFEG00010011861	L3MBTL4 (ENSRFEG00010011944)	TMEM200C (ENSRFEG00010012187)	ENSRFEG00010012203 #22	EPB41L3 (ENSRFEG00010012327)	ZBTB14 (ENSRFEG00010013973)	ENSRFEG00010014022	AKAIN1 (ENSRFEG00010014046)	DLGAP1 (ENSRFEG00010014146)	TGIF1 (ENSRFEG00010014659)	MYL12B (ENSRFEG00010014767)	ENSRFEG00010014795	MYOM1 (ENSRFEG00010014872)	LPIN2 (ENSRFEG00010016004)	EMILIN2 (ENSRFEG00010016098)	SMCHD1 (ENSRFEG00010016132)	NDC80 (ENSRFEG00010016810)	METTL4 (ENSRFEG00010017011)	ENSRFEG00010017086
Greater horseshoe bat	MODERN SPECIES	6	HRC (ENSRFEG00010008036) #7	TRPM4 (ENSRFEG00010008167) #8	ENSRFEG00010008271	SLC6A16 (ENSRFEG00010008390) #10	TEAD2 (ENSRFEG00010008573) #12	CD37 (ENSRFEG00010008713) #11	DKKL1 (ENSRFEG00010008799) #13	KASH5 (ENSRFEG00010008844) #14	PTH2 (ENSRFEG00010008874) #15	GFY (ENSRFEG00010008908) #16	SLC17A7 (ENSRFEG00010008954) #17	PIH1D1 (ENSRFEG00010009002) #18	ALDH16A1 (ENSRFEG00010009144) #19	FLT3LG (ENSRFEG00010009320) #20	RPL13A (ENSRFEG00010009364) ##21	ENSRFEG00010009427 #22	FCGRT (ENSRFEG00010009551) #23	RCN3 (ENSRFEG00010009608) #24	NOSIP (ENSRFEG00010009649) #25	PRRG2 (ENSRFEG00010009690) #26	PRR12 (ENSRFEG00010009738) #27	RRAS (ENSRFEG00010009871) #28	SCAF1 (ENSRFEG00010009912) #29	IRF3 (ENSRFEG00010009958) #31	BCL2L12 (ENSRFEG00010010039) #32	PRMT1 (ENSRFEG00010010147) #33	CPT1C (ENSRFEG00010010276) #34	TSKS (ENSRFEG00010010392) #35	AP2A1 (ENSRFEG00010010576) #36	FUZ (ENSRFEG00010010654) #37	MED25 (ENSRFEG00010010795)
Atlantogenata	ANCESTRAL SPECIES	38	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.a ##21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37	ENSGT00940000160439
Xenarthra	ANCESTRAL SPECIES																	ENSGT00390000002732.n #22
Armadillo	MODERN SPECIES	2774	DLX6 (ENSDNOG00000031561)	SEM1 (ENSDNOG00000048095)	ENSDNOG00000039816	SLC25A13 (ENSDNOG00000015565)	ENSDNOG00000047415	ENSDNOG00000033564	PDK4 (ENSDNOG00000012861)	ASB4 (ENSDNOG00000043911)	PON2 (ENSDNOG00000048645)	PON3 (ENSDNOG00000005791)	PON1 (ENSDNOG00000006882)	PPP1R9A (ENSDNOG00000006871)	ENSDNOG00000036759	SGCE (ENSDNOG00000002355)	CASD1 (ENSDNOG00000007252)	ENSDNOG00000045185 #22	COL1A2 (ENSDNOG00000001921)
Afrotheria	ANCESTRAL SPECIES	22	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.a ##21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37	ENSGT00940000160439
Afrotheria_a	ANCESTRAL SPECIES	21	ENSGT00730000111459 #7	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.a ##21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37	ENSGT00940000160439
Hyrax	MODERN SPECIES	6408							TEAD2 (ENSPCAG00000003576) #12	DKKL1 (ENSPCAG00000003640) #13	ENSPCAG00000003660 #14	PTH2 (ENSPCAG00000003770) #15	SLC17A7 (ENSPCAG00000003793) #17	PIH1D1 (ENSPCAG00000003860) #18	ALDH16A1 (ENSPCAG00000003932) #19	FLT3LG (ENSPCAG00000004039) #20	RPL13A (ENSPCAG00000004086) ##21	RPS11 (ENSPCAG00000004146) #22
Elephant	MODERN SPECIES	375	ENSLAFG00000027450 #9	ENSLAFG00000029890	ENSLAFG00000026533 #10	TRPM4 (ENSLAFG00000022565) #8	ENSLAFG00000011819 #10	CD37 (ENSLAFG00000016178) #11	TEAD2 (ENSLAFG00000016184) #12	DKKL1 (ENSLAFG00000016188) #13	KASH5 (ENSLAFG00000029145) #14	PTH2 (ENSLAFG00000026150) #15	SLC17A7 (ENSLAFG00000016196) #17	PIH1D1 (ENSLAFG00000016200) #18	ENSLAFG00000016203	FLT3LG (ENSLAFG00000016211) #20	RPL13A (ENSLAFG00000016213) ##21	RPS11 (ENSLAFG00000016217) #22	RCN3 (ENSLAFG00000011677) #24	NOSIP (ENSLAFG00000017025) #25	PRRG2 (ENSLAFG00000026190) #26	PRR12 (ENSLAFG00000016051) #27	RRAS (ENSLAFG00000028763) #28	SCAF1 (ENSLAFG00000021360) #29	IRF3 (ENSLAFG00000028074) #31	ENSLAFG00000022155 #23	PRMT1 (ENSLAFG00000018053) #33	ENSLAFG00000027232 ##34	TSKS (ENSLAFG00000016910) #35	AP2A1 (ENSLAFG00000027046) #36	FUZ (ENSLAFG00000029729) #37	MED25 (ENSLAFG00000014186)	PNKP (ENSLAFG00000022483)
Tenrec	DUPLICATION
Tenrec	MODERN SPECIES	773													PIH1D1 (ENSETEG00000017070) #18	ALDH16A1 (ENSETEG00000017073) #19	RPL13A (ENSETEG00000017076) ##21	ENSETEG00000017080 #22
Tenrec	MODERN SPECIES	13001																ENSETEG00000011214 #22
Tenrec	MODERN SPECIES	16178																ENSETEG00000019860 #22
Marsupialia	DUPLICATION
Marsupialia	DUPLICATION
Marsupialia	ANCESTRAL SPECIES																	ENSGT00390000002732.n.cc.a #22
Marsupialia_b	ANCESTRAL SPECIES																	ENSGT00390000002732.n.cc.a #22
Diprotodontia	ANCESTRAL SPECIES																	ENSGT00390000002732.n.cc.a #22
Wallaby	MODERN SPECIES	1407																RPS11 (ENSMEUG00000008649) #22	ENSMEUG00000008659 #23
Opossum	MODERN SPECIES	2	HAS2 (ENSMODG00000046665)	SNTB1 (ENSMODG00000002274)	MTBP (ENSMODG00000002290)	MRPL13 (ENSMODG00000040540)	ENSMODG00000048911	ENSMODG00000003690	DEPTOR (ENSMODG00000025626)	DSCC1 (ENSMODG00000003856)	ENSMODG00000040574	ENSMODG00000045886	TAF2 (ENSMODG00000003943)	ENSMODG00000044265	ENSMODG00000036390	ENPP2 (ENSMODG00000003977)	CCN3 (ENSMODG00000003994)	ENSMODG00000004003 #22	MAL2 (ENSMODG00000004011)	ENSMODG00000004037	COLEC10 (ENSMODG00000049233)	TNFRSF11B (ENSMODG00000004064)	ENSMODG00000024468	ENSMODG00000049307	SAMD12 (ENSMODG00000004068)	EXT1 (ENSMODG00000004092)	MED30 (ENSMODG00000004103)	ENSMODG00000033067	RAD21 (ENSMODG00000004133)	UTP23 (ENSMODG00000004140)	EIF3H (ENSMODG00000004154)	TRPS1 (ENSMODG00000004181)	ENSMODG00000047826
Marsupialia	ANCESTRAL SPECIES	27	ENSGT00940000160292	ENSGT00940000162339	ENSGT00390000007725.B.c	ENSGT00940000161285	ENSGT00940000153556.B	ENSGT00390000018612.a.a	ENSGT00940000153096	ENSGT01090000260003.a.b.a	ENSGT00390000007946	ENSGT00390000001927.b	ENSGT00940000161908	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799 #21	ENSGT00390000002732.n.cc.b #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154700 #33	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37	ENSGT00940000160439	ENSGT00940000159302
Opossum	MODERN SPECIES	3	PPFIA3 (ENSMODG00000013817)	ENSMODG00000023381	KCNA7 (ENSMODG00000037394)	NTF4 (ENSMODG00000013772)	ENSMODG00000013768	RUVBL2 (ENSMODG00000013763)	GYS1 (ENSMODG00000013742)	ENSMODG00000013730	BAX (ENSMODG00000013726)	ENSMODG00000013719	ENSMODG00000013712	ENSMODG00000013699	ENSMODG00000013683 #18	ALDH16A1 (ENSMODG00000013676) #19	RPL13A (ENSMODG00000023391) #21	ENSMODG00000013434 #22	ENSMODG00000013649 #23	RCN3 (ENSMODG00000013632) #24	NOSIP (ENSMODG00000013629) #25	ENSMODG00000013620 #26	ENSMODG00000013613 #27	RRAS (ENSMODG00000037260) #28	ENSMODG00000023396	ENSMODG00000041939 #29	IRF3 (ENSMODG00000013603) #31	PRMT1 (ENSMODG00000013595) #33	ENSMODG00000013567 #34	ENSMODG00000013440 #35	FUZ (ENSMODG00000013403) #37	ENSMODG00000043953	AKT1S1 (ENSMODG00000044767)
Marsupialia_b	ANCESTRAL SPECIES	28	ENSGT00940000160292	ENSGT00940000162339	ENSGT00390000007725.B.c	ENSGT00940000161285	ENSGT00940000153556.B	ENSGT00390000018612.a.a	ENSGT00940000153096	ENSGT01090000260003.a.b.a	ENSGT00390000007946	ENSGT00390000001927.b	ENSGT00940000161908	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799 #21	ENSGT00390000002732.n.cc.b #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505.`b.a #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154700 #33	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37	ENSGT00940000160439	ENSGT00940000159302
Diprotodontia	ANCESTRAL SPECIES	45	ENSGT00940000160292	ENSGT00940000162339	ENSGT00390000007725.B.c	ENSGT00940000161285	ENSGT00940000153556.B	ENSGT00390000018612.a.a	ENSGT00940000153096	ENSGT01090000260003.a.b.a	ENSGT00390000007946	ENSGT00390000001927.b	ENSGT00940000161908	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799 #21	ENSGT00390000002732.n.cc.b #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505.`b.a #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154700 #33	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37	ENSGT00940000160439	ENSGT00940000159302
Diprotodontia_a	ANCESTRAL SPECIES	40	ENSGT00940000160292	ENSGT00940000162339	ENSGT00390000007725.B.c	ENSGT00940000161285	ENSGT00940000153556.B	ENSGT00390000018612.a.a	ENSGT00940000153096.f.a	ENSGT01090000260003.a.b.a	ENSGT00390000007946	ENSGT00390000001927.b	ENSGT00940000161908	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799 #21	ENSGT00390000002732.n.cc.b #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505.`b.a #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154700 #33	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35	ENSGT00950000182838.A.a.a #36	ENSGT00390000010727 #37	ENSGT00940000160439	ENSGT00940000159302
koala	MODERN SPECIES	100	ENSPCIG00000007294	SNRNP70 (ENSPCIG00000007296)	KCNA7 (ENSPCIG00000007299)	NTF4 (ENSPCIG00000007300)	ENSPCIG00000007302	RUVBL2 (ENSPCIG00000007304)	GYS1 (ENSPCIG00000007306)	ENSPCIG00000007308	BAX (ENSPCIG00000007329)	DHDH (ENSPCIG00000007331)	TULP2 (ENSPCIG00000007335)	ENSPCIG00000007337 #18	ALDH16A1 (ENSPCIG00000007338) #19	ENSPCIG00000032295 #20	ENSPCIG00000007340 #21	RPS11 (ENSPCIG00000007352) #22	ENSPCIG00000031152 #23	RCN3 (ENSPCIG00000007365) #24	NOSIP (ENSPCIG00000007366) #25	PRR12 (ENSPCIG00000007368) #27	RRAS (ENSPCIG00000007369) #28	ENSPCIG00000032871	ENSPCIG00000007371 #31	PRMT1 (ENSPCIG00000007372) #33	CPT1C (ENSPCIG00000007931) #34	ENSPCIG00000007939	TSKS (ENSPCIG00000007950) #35	AP2A1 (ENSPCIG00000008128) #36	FUZ (ENSPCIG00000018698) #37	MED25 (ENSPCIG00000018700)	PNKP (ENSPCIG00000018702)
Marsupialia	ANCESTRAL SPECIES																	ENSGT00390000002732.n.dc #22
Marsupialia_b	ANCESTRAL SPECIES																	ENSGT00390000002732.n.dc #22
Diprotodontia	ANCESTRAL SPECIES																	ENSGT00390000002732.n.dc #22
Diprotodontia_a	ANCESTRAL SPECIES																	ENSGT00390000002732.n.dc #22
Common wonbat	DUPLICATION
Common wonbat	DUPLICATION
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	634																ENSVURG00010020976 #22
Common wonbat	MODERN SPECIES	585																ENSVURG00010018753 #22
Common wonbat	MODERN SPECIES	633																ENSVURG00010020975 #22
Common wonbat	MODERN SPECIES	584																ENSVURG00010018748 #22
Opossum	MODERN SPECIES	1	TSTD1 (ENSMODG00000005452)	F11R (ENSMODG00000044346)	PDCD2 (ENSMODG00000005477)	TBP (ENSMODG00000005484)	PSMB1 (ENSMODG00000005573)	ENSMODG00000045045	ENSMODG00000029038	DLL1 (ENSMODG00000005607)	ERMARD (ENSMODG00000005645)	TCTE3 (ENSMODG00000040827)	PHF10 (ENSMODG00000005689)	C6orf120 (ENSMODG00000023268)	WDR27 (ENSMODG00000005707)	THBS2 (ENSMODG00000005780)	ENSMODG00000023269	ENSMODG00000005785 #22	SMOC2 (ENSMODG00000005807)	ENSMODG00000005818	ENSMODG00000005865	ENSMODG00000037854	ENSMODG00000040141	AFDN (ENSMODG00000006062)	UNC93A (ENSMODG00000025690)	TTLL2 (ENSMODG00000006111)	ENSMODG00000029483	GPR31 (ENSMODG00000006120)	CCR6 (ENSMODG00000037007)	ENSMODG00000006175	RNASET2 (ENSMODG00000006193)	ENSMODG00000006251	RPS6KA2 (ENSMODG00000006241)
Platypus	MODERN SPECIES	1	ENSOANG00000049948	RUVBL2 (ENSOANG00000051054)	GYS1 (ENSOANG00000004219)	FTL (ENSOANG00000045435)	ENSOANG00000047614	BAX (ENSOANG00000039128)	ENSOANG00000002021 #9	ENSOANG00000013934 #11	TEAD2 (ENSOANG00000013933) #12	ENSOANG00000051009 #13	ENSOANG00000040922	SLC17A7 (ENSOANG00000037713) #17	PIH1D1 (ENSOANG00000050468) #18	ALDH16A1 (ENSOANG00000006835) #19	ENSOANG00000000827 #20	RPS11 (ENSOANG00000000829) #22	ENSOANG00000046443	ENSOANG00000048222	ENSOANG00000031146	ENSOANG00000049617	PLEKHA4 (ENSOANG00000046259)	ENSOANG00000012856	RASIP1 (ENSOANG00000049908)	NTN5 (ENSOANG00000001706)	CA11 (ENSOANG00000047341)	ENSOANG00000002210	SPHK2 (ENSOANG00000039278)	RPL18 (ENSOANG00000021547)	SPACA4 (ENSOANG00000012774)	FAM83E (ENSOANG00000036377)	SULT2B1 (ENSOANG00000020298)
Sauria	ANCESTRAL SPECIES	99																ENSGT00390000002732.n #22	ENSGT01090000260043.a.a.a.b.b.b	ENSGT00940000156437.j.b.a	ENSGT00940000162603	ENSGT00390000010849	ENSGT00940000157809	ENSGT00960000189084
Lepidosauria	ANCESTRAL SPECIES	324																ENSGT00390000002732.n #22	ENSGT01100000263528.C
tuatara	MODERN SPECIES	1773																RPS11 (ENSSPUG00000005205) #22	ENSSPUG00000005195	ENSSPUG00000005186	ENSSPUG00000005175
Episquamata	ANCESTRAL SPECIES	2	ENSGT00960000190355	ENSGT00940000167530	ENSGT00510000047925	ENSGT00950000183078.b.a.a	ENSGT00390000013075.a	ENSGT00390000004140.b	ENSGT01060000248588.b	ENSGT01030000234601.c.a.a.a	ENSGT00550000074799	ENSGT00510000047299	ENSGT00940000155158	ENSGT00390000000214.a.a	ENSGT00940000165269	ENSGT00910000144246	ENSGT01100000263522.B.d	ENSGT00390000002732.n #22	ENSGT01090000260043.a.a.a.b.b.b	ENSGT00940000156437.j.b.a.b	ENSGT00940000162603	ENSGT00940000156437.j.b.a.a	ENSGT00940000156437.j.a	ENSGT00390000010849	ENSGT00940000157809.d	ENSGT00960000189084	ENSGT00940000157809.c	ENSGT00390000016268	ENSGT00950000182936.a.a.a	ENSGT00940000159415	ENSGT01100000263563.c.a	ENSGT00950000183182.b	ENSGT00390000000002.a.b
Toxicofera	ANCESTRAL SPECIES	39	ENSGT00960000190355	ENSGT00940000167530	ENSGT00510000047925	ENSGT00950000183078.b.a.a	ENSGT00390000013075.a	ENSGT00390000004140.b	ENSGT01060000248588.b	ENSGT01030000234601.c.a.a.a	ENSGT00550000074799	ENSGT00510000047299	ENSGT00940000155158	ENSGT00390000000214.a.a	ENSGT00940000165269	ENSGT00910000144246	ENSGT01100000263522.B.c	ENSGT00390000002732.n #22	ENSGT01090000260043.a.a.a.b.b.b	ENSGT00940000156437.j.b.a.b	ENSGT00940000156437.j.a	ENSGT00940000157809.c	ENSGT00390000010849	ENSGT00940000157809.d	ENSGT00960000189084	ENSGT00940000155116.a.t	ENSGT00390000016268	ENSGT00950000182936.a.a.a	ENSGT00940000159415	ENSGT01100000263563.c.a	ENSGT00950000183182.b	ENSGT00390000000002.a.b	ENSGT00390000009178
Lizard	MODERN SPECIES	1298											ENSACAG00000003506	ENSACAG00000003248	ENSACAG00000003089	ENSACAG00000038640	ENSACAG00000036246	ENSACAG00000003051 #22	ENSACAG00000002646	ENSACAG00000038472
Elapidae	ANCESTRAL SPECIES	37	ENSGT00510000047925	ENSGT00950000183078.b.a.a	ENSGT00390000013075.a	ENSGT00390000004140.b	ENSGT01060000248588.b	ENSGT01030000234601.c.a.a.a	ENSGT00550000074799	ENSGT00510000047299	ENSGT00940000155158	ENSGT00390000000214.a.a	ENSGT00940000165269	ENSGT00910000144246	ENSGT01100000263522.B.c	ENSGT01100000263522.A.c.b.d	ENSGT01100000263490.D.a.a	ENSGT00390000002732.n #22	ENSGT01090000260043.a.a.a.b.b.b	ENSGT00940000156437.j.b.a.b	ENSGT00940000156437.j.b.a.a	ENSGT00940000156437.j.a	ENSGT00940000157809.c	ENSGT00390000010849	ENSGT00940000157809.d	ENSGT00960000189084.f	ENSGT01090000259999.C.k.a	ENSGT00940000155116.a.t	ENSGT00390000016268	ENSGT00950000182936.a.a.a	ENSGT00940000159415	ENSGT01100000263563.c.a	ENSGT00950000183182.b
Indian cobra	MODERN SPECIES	337	ENSNNAG00000003311	ENSNNAG00000003296	ENSNNAG00000006808	ENSNNAG00000006801	ENSNNAG00000006776	ENSNNAG00000006763	ENSNNAG00000006702	ENSNNAG00000006667	ENSNNAG00000006644	ENSNNAG00000006611	ENSNNAG00000006580	ENSNNAG00000006548	ENSNNAG00000006536	ENSNNAG00000006469	ENSNNAG00000006444	ENSNNAG00000006434 #22	ENSNNAG00000006419	ENSNNAG00000006404	ENSNNAG00000006387	ENSNNAG00000006378	ENSNNAG00000006367	ENSNNAG00000006341	ENSNNAG00000006326	ENSNNAG00000006309	ENSNNAG00000006299	ENSNNAG00000006268	ENSNNAG00000006254	ENSNNAG00000006232	ENSNNAG00000006214	ENSNNAG00000006201	ENSNNAG00000006186
Elapidae_a	ANCESTRAL SPECIES	87			ENSGT00390000013075.a	ENSGT00390000004140.b	ENSGT01060000248588.b	ENSGT01030000234601.c.a.a.a	ENSGT00550000074799	ENSGT00510000047299	ENSGT00940000155158	ENSGT00390000000214.a.a	ENSGT00940000165269	ENSGT00910000144246	ENSGT01100000263522.B.c	ENSGT01100000263522.A.c.b.d	ENSGT01100000263490.D.a.a	ENSGT00390000002732.n #22	ENSGT01090000260043.a.a.a.b.b.b	ENSGT00940000156437.j.b.a.b	ENSGT00940000156437.j.b.a.a	ENSGT00940000156437.j.a	ENSGT00940000157809.c	ENSGT00390000010849	ENSGT00940000157809.d	ENSGT01090000260056	ENSGT00940000155717.d	ENSGT00940000155116.a.t	ENSGT00390000016268	ENSGT00950000182936.a.a.a	ENSGT00940000159415	ENSGT01100000263563.c.a	ENSGT00950000183182.b
Acanthophiinae	ANCESTRAL SPECIES	83				ENSGT00390000013075.a	ENSGT00390000004140.b	ENSGT01060000248588.b	ENSGT01030000234601.c.a.a.a	ENSGT00550000074799	ENSGT00510000047299	ENSGT00940000155158	ENSGT00390000000214.a.a	ENSGT00940000165269	ENSGT00910000144246	ENSGT01100000263522.B.c	ENSGT01100000263522.A.c.b.d	ENSGT00390000002732.n #22	ENSGT01090000260043.a.a.a.b.b.b	ENSGT00940000156437.j.b.a.b	ENSGT00940000156437.j.a	ENSGT00390000010849	ENSGT00940000157809.c	ENSGT00960000189084.e	ENSGT00940000157809.d	ENSGT01090000260056	ENSGT00940000155717.d	ENSGT00940000155116.a.t	ENSGT00390000016268	ENSGT00950000182936.a.a.a	ENSGT00940000159415	ENSGT01100000263563.c.a	ENSGT00950000183182.b
Mainland tiger snake	MODERN SPECIES	289														ENSNSUG00000009515	ENSNSUG00000009514	RPS11 (ENSNSUG00000009513) #22	ENSNSUG00000009501	ENSNSUG00000009500	ENSNSUG00000009499	ENSNSUG00000009498	CSNK2B (ENSNSUG00000009497)	GPANK1 (ENSNSUG00000009496)	ENSNSUG00000009495	ENSNSUG00000009494	TNF (ENSNSUG00000009492)	ENSNSUG00000009491
Eastern brown snake	MODERN SPECIES	176		RNF121 (ENSPTXG00000011388)	XNDC1N (ENSPTXG00000011389)	ENSPTXG00000011391	ENSPTXG00000011392	ENSPTXG00000011393	NUP98 (ENSPTXG00000011420)	PGAP2 (ENSPTXG00000011475)	RHOG (ENSPTXG00000011479)	STIM1 (ENSPTXG00000011481)	ENSPTXG00000011485	RRM1 (ENSPTXG00000011494)	ENSPTXG00000011500	ENSPTXG00000011504	ENSPTXG00000011507	RPS11 (ENSPTXG00000011510) #22	ENSPTXG00000011515	ENSPTXG00000011517	ENSPTXG00000011520	ENSPTXG00000011536	ENSPTXG00000011537	ENSPTXG00000011538	ENSPTXG00000011539	ENSPTXG00000011541	CDCA8 (ENSPTXG00000011543)	ENSPTXG00000011545	CCKBR (ENSPTXG00000011564)	ENSPTXG00000011566	CNGA4 (ENSPTXG00000011567)	ENSPTXG00000011568	ENSPTXG00000011569
Blue-lipped sea krait	DUPLICATION
Blue-lipped sea krait	MODERN SPECIES	4894									STIM1 (ENSLLTG00000007745)	ENSLLTG00000007686	RRM1 (ENSLLTG00000007635)	ENSLLTG00000007550	ENSLLTG00000007518	OR51E2 (ENSLLTG00000007499)	ENSLLTG00000006179	RPS11 (ENSLLTG00000006158) #22	ENSLLTG00000006153	ENSLLTG00000006151	ENSLLTG00000006145	ENSLLTG00000006016	ENSLLTG00000006001	ENSLLTG00000005994	ENSLLTG00000005930	CIAO1 (ENSLLTG00000005903)	TMEM127 (ENSLLTG00000005893)	STARD7 (ENSLLTG00000005880)
Blue-lipped sea krait	MODERN SPECIES	605																ENSLLTG00000018243 #22	ENSLLTG00000018236
Laterata	ANCESTRAL SPECIES	63	ENSGT00940000155956	ENSGT00390000006189	ENSGT00450000040326	ENSGT00950000183040.A.a	ENSGT00940000155128.a.a.b	ENSGT00940000158173	ENSGT00390000009178	ENSGT00390000000002.a.b	ENSGT00950000183182.b	ENSGT01100000263563.c.a	ENSGT00940000159415	ENSGT00950000182936.a.a.a	ENSGT00390000016268	ENSGT00940000155116.a	ENSGT00980000198666	ENSGT00390000002732.n #22	ENSGT01090000260043.a.a.a.b.b.b	ENSGT00940000156437.j.b.a.b	ENSGT00940000162603	ENSGT00940000156437.j.b.a.a	ENSGT00940000156437.j.a	ENSGT00940000157809.c.a	ENSGT00960000189084	ENSGT00940000157809.c.b
Argentine black and white tegu	MODERN SPECIES	118	NUP98 (ENSSMRG00000001664)	PGAP2 (ENSSMRG00000001672)	RHOG (ENSSMRG00000001677)	STIM1 (ENSSMRG00000001690)	RRM1 (ENSSMRG00000001706)	OR52M1 (ENSSMRG00000001709)	ENSSMRG00000001710	ENSSMRG00000001716	ENSSMRG00000001723	ENSSMRG00000001741	ENSSMRG00000001743	ENSSMRG00000001745	ENSSMRG00000001770	ENSSMRG00000001781	CDCA8 (ENSSMRG00000001785)	RPS11 (ENSSMRG00000001831) #22	ENSSMRG00000001844	ENSSMRG00000001849	ENSSMRG00000001850	ENSSMRG00000001853	ENSSMRG00000001858	ENSSMRG00000001870	ENSSMRG00000001873	ENSSMRG00000001888	ENSSMRG00000001889
Common wall lizard	MODERN SPECIES	12	ENSPMRG00000002220	ENSPMRG00000002217	ENSPMRG00000002213	ENSPMRG00000002212	ENSPMRG00000002210	ENSPMRG00000002208	ENSPMRG00000002203	ENSPMRG00000002201	ENSPMRG00000002198	ENSPMRG00000002195	ENSPMRG00000002189	ENSPMRG00000002184	ENSPMRG00000002173	OR52R1 (ENSPMRG00000002165)	ENSPMRG00000002158	RPS11 (ENSPMRG00000002142) #22	ENSPMRG00000002134	ENSPMRG00000002130	ENSPMRG00000002126	ENSPMRG00000002124	ENSPMRG00000002122	ENSPMRG00000002119	ENSPMRG00000002114	ENSPMRG00000002108	ENSPMRG00000002105	ENSPMRG00000000811	ENSPMRG00000000288	ENSPMRG00000000264	ENSPMRG00000000236	ENSPMRG00000000202	ENSPMRG00000000180
Archelosauria	ANCESTRAL SPECIES	124																ENSGT00390000002732.n #22	ENSGT01090000260043.a.a.a.b.b.b	ENSGT00940000156437.j.b.a	ENSGT00940000162603
Cryptodira	ANCESTRAL SPECIES	191															ENSGT01090000260013.b.a.b.b.a.b.a.b.a.b.b.b	ENSGT00390000002732.n #22	ENSGT01100000263528.C
Chinese turtle	MODERN SPECIES	25															ENSPSIG00000001633	ENSPSIG00000011089 #22
Testudinoidea	ANCESTRAL SPECIES	107														ENSGT01090000260013.b.a.b.b.a.b.a.b.a.b.b.b.a.b.a	ENSGT01090000260013.b.a.b.b.a.b.a.b.a.b.b.b.a.a	ENSGT00390000002732.n #22	ENSGT01100000263528.C	ENSGT01090000260043.a.a.a.b.b.a.a.a
Emydidae	ANCESTRAL SPECIES	214																ENSGT00390000002732.n #22	ENSGT01100000263528.C	ENSGT01090000260043.a.a.a.b.b.a.a.a
painted turtle	DUPLICATION
painted turtle	MODERN SPECIES	1528																ENSCPBG00000002937 #22	ENSCPBG00000002972	ENSCPBG00000002988
painted turtle	MODERN SPECIES	716	FNBP1 (ENSCPBG00000022705)	ENSCPBG00000022697	ENSCPBG00000022683	ASS1 (ENSCPBG00000022650)	FUBP3 (ENSCPBG00000022635)	PRDM12 (ENSCPBG00000022628)	EXOSC2 (ENSCPBG00000022626)	ABL1 (ENSCPBG00000022624)	QRFP (ENSCPBG00000022622)	FIBCD1 (ENSCPBG00000022617)	LAMC3 (ENSCPBG00000022610)	AIF1L (ENSCPBG00000022607)	NUP214 (ENSCPBG00000022591)	FAM78A (ENSCPBG00000022584)	PLPP7 (ENSCPBG00000022582)	ENSCPBG00000022580 #22	PRRC2B (ENSCPBG00000021552)	POMT1 (ENSCPBG00000021526)	UCK1 (ENSCPBG00000021525)	RAPGEF1 (ENSCPBG00000021248)	MED27 (ENSCPBG00000021233)	NTNG2 (ENSCPBG00000021231)	SETX (ENSCPBG00000021225)	TTF1 (ENSCPBG00000021220)	ENSCPBG00000021218	BARHL1 (ENSCPBG00000021217)	DDX31 (ENSCPBG00000021215)	ENSCPBG00000021213	GTF3C4 (ENSCPBG00000021211)	SPACA9 (ENSCPBG00000021206)	TSC1 (ENSCPBG00000021196)
Three-toed box turtle	MODERN SPECIES	248											ENSTMTG00000015500	ENSTMTG00000015509	ENSTMTG00000015516	ENSTMTG00000015527	ENSTMTG00000015536	ENSTMTG00000015542 #22	OR52P1 (ENSTMTG00000015567)	ENSTMTG00000015575	ENSTMTG00000015588	ENSTMTG00000015601	ENSTMTG00000015614	ENSTMTG00000015657	ENSTMTG00000015669	ENSTMTG00000015684	ENSTMTG00000015698	ENSTMTG00000015705	ENSTMTG00000015713	ENSTMTG00000015721	ENSTMTG00000015736	ENSTMTG00000015766	ENSTMTG00000015783
Testudinidae	ANCESTRAL SPECIES	146															ENSGT01090000260013.b.a.b.b.a.b.a.b.a.b.b.b.a.a.b	ENSGT00390000002732.n #22	ENSGT01100000263528.C	ENSGT01090000260043.a.a.a.b.b.a.a.a
Goode s thornscrub tortoise	MODERN SPECIES	143	ENSGEVG00005009391	ENSGEVG00005009412	ENSGEVG00005009449	ENSGEVG00005009496	ENSGEVG00005009535	ENSGEVG00005009676	ENSGEVG00005009725	ENSGEVG00005009754	ENSGEVG00005009771	ENSGEVG00005009793	ENSGEVG00005009807	ENSGEVG00005009822	ENSGEVG00005009873	ENSGEVG00005009923	ENSGEVG00005009959	RPS11 (ENSGEVG00005010001) #22	ENSGEVG00005010145	ENSGEVG00005010191	ENSGEVG00005010235	ENSGEVG00005010277	ENSGEVG00005010310	ENSGEVG00005010348	ENSGEVG00005010378	ENSGEVG00005010400	ENSGEVG00005010424	ENSGEVG00005010460	ENSGEVG00005010508	ENSGEVG00005010543	ENSGEVG00005010588	ENSGEVG00005010628	ENSGEVG00005010681
Abingdon island giant tortoise	MODERN SPECIES	2154											ENSCABG00000017681	ENSCABG00000017679	ENSCABG00000017674	ENSCABG00000017670	ENSCABG00000017668	RPS11 (ENSCABG00000017657) #22	ENSCABG00000017654	ENSCABG00000017650	ENSCABG00000017649	ENSCABG00000017645	ENSCABG00000017643	ENSCABG00000017633	ENSCABG00000017624
Archosauria	ANCESTRAL SPECIES	230																ENSGT00390000002732.n #22	ENSGT01090000260043.a.a.a.b.b.b
Aves	ANCESTRAL SPECIES	220																ENSGT00390000002732.n #22	ENSGT01090000260043.a.a.a.b.b.b
African ostrich	MODERN SPECIES	787											ENSSCUG00000011698	ENSSCUG00000011702	ENSSCUG00000011714	ENSSCUG00000011729	ENSSCUG00000011731	RPS11 (ENSSCUG00000011737) #22	ENSSCUG00000011743	ENSSCUG00000011746
Neognathae	ANCESTRAL SPECIES	1	ENSGT00940000155158	ENSGT00390000000214.a.a	ENSGT00940000165269	ENSGT00910000144246	ENSGT01090000260013.b.b	ENSGT01100000263528.A.b.b	ENSGT01100000263528.A.b.a	ENSGT01100000263490.C.a	ENSGT01100000263490.D.a.a	ENSGT01090000259999.F	ENSGT00950000183144.A.c	ENSGT01100000263554.A.b	ENSGT01090000260043.a.a.a.b.b.a.b	ENSGT00940000156437.j.a.a	ENSGT01090000260043.a.a.a.b.b.b	ENSGT00390000002732.n #22	ENSGT00940000155116.a	ENSGT00950000182936.a.a.a	ENSGT00940000159415	ENSGT01100000263563.c.a	ENSGT00950000183182.b	ENSGT00390000000002.a.b	ENSGT00390000009178	ENSGT00940000158173	ENSGT00950000183040.A.a	ENSGT00450000040326	ENSGT00390000006189	ENSGT00940000155956	ENSGT00390000009368	ENSGT00390000008684	ENSGT00940000163671.b
Galloanserae	ANCESTRAL SPECIES	1	ENSGT00390000015701	ENSGT00950000182887.C.a.b	ENSGT00960000190186	ENSGT00550000074799	ENSGT00510000047299	ENSGT00940000155158	ENSGT00390000000214.a.a	ENSGT00940000165269	ENSGT00910000144246	ENSGT01090000260013.b.b	ENSGT01090000260013.b.a.a.a.b	ENSGT01100000263490.A.a.a.a	ENSGT01090000260043.a.a.a.b.b.a.a.a	ENSGT00950000183144.A.c	ENSGT01100000263554.A.b	ENSGT00390000002732.n #22	ENSGT00950000182936.a.a.a	ENSGT00940000159415	ENSGT01100000263563.c.a	ENSGT00950000183182.b	ENSGT00390000000002.a.b	ENSGT00390000009178	ENSGT00940000158173	ENSGT00950000183040.A.a	ENSGT00450000040326	ENSGT00390000006189	ENSGT00940000155956	ENSGT00390000009368	ENSGT00390000008684	ENSGT00940000163671.b	ENSGT00940000162599
Anatidae	ANCESTRAL SPECIES	165														ENSGT01090000260043.a.a.a.b.b.a.b	ENSGT01090000260043.a.a.a.b.b.b	ENSGT00390000002732.n #22
Pink-footed goose	MODERN SPECIES	278	RRM1 (ENSABRG00000012244)	ENSABRG00000012269	ENSABRG00000012276	ENSABRG00000012295	ENSABRG00000012322	ENSABRG00000012324	ENSABRG00000012330	ENSABRG00000012338	ENSABRG00000012341	ENSABRG00000012346	ENSABRG00000012354	ENSABRG00000012390	ENSABRG00000012400	ENSABRG00000012407	ENSABRG00000012410	RPS11 (ENSABRG00000000727) #22	ENSABRG00000000791	FHIP1B (ENSABRG00000000820)	CNGA4 (ENSABRG00000000926)	CCKBR (ENSABRG00000000945)	APBB1 (ENSABRG00000001000)	HPX (ENSABRG00000001101)	TRIM3 (ENSABRG00000001142)	ARFIP2 (ENSABRG00000001173)	TIMM10B (ENSABRG00000001192)	ENSABRG00000001223	ILK (ENSABRG00000001278)	TAF10 (ENSABRG00000001328)	TPP1 (ENSABRG00000001354)	ENSABRG00000001391	LCMT2 (ENSABRG00000001414)
Phasianidae	ANCESTRAL SPECIES		ENSGT01100000263528.A.b.b	ENSGT01090000259999.F	ENSGT01100000263490.D.a.a	ENSGT01090000260013.b.a.a.a.b	ENSGT00960000189084.h	ENSGT00940000157809.e.b	ENSGT00390000010849.b	ENSGT00940000157809.e.a.a.b	ENSGT00390000010849.a.e.b	ENSGT01090000260043.a.a.a.b.b.a.a.a	ENSGT00950000183144.A.c	ENSGT01100000263554.A.b	ENSGT01090000260043.a.a.a.b.b.a.b	ENSGT00940000156437.j.a.a	ENSGT01090000260043.a.a.a.b.b.b	ENSGT00390000002732.n #22	ENSGT00950000182936.a.a.a	ENSGT00940000159415	ENSGT01100000263563.c.a	ENSGT00950000183182.b	ENSGT00390000000002.a.b	ENSGT00390000009178	ENSGT00940000158173	ENSGT00950000183040.A.a	ENSGT00450000040326	ENSGT00390000006189	ENSGT00940000155956	ENSGT00390000009368	ENSGT00390000008684	ENSGT00940000163671.b	ENSGT00940000162599
Japanese quail	MODERN SPECIES		ENSCJPG00005005670	ENSCJPG00005005666	OR51E2 (ENSCJPG00005005660)	ENSCJPG00005005657	ENSCJPG00005005655	ENSCJPG00005005654	ENSCJPG00005005652	ENSCJPG00005005650	ENSCJPG00005005649	ENSCJPG00005005510	ENSCJPG00005005507	ENSCJPG00005005504	ENSCJPG00005005502	ENSCJPG00005005500	ENSCJPG00005005498	RPS11 (ENSCJPG00005005488) #22	FHIP1B (ENSCJPG00005005483)	CNGA4 (ENSCJPG00005005481)	CCKBR (ENSCJPG00005005479)	SMPD1 (ENSCJPG00005005471)	APBB1 (ENSCJPG00005005399)	HPX (ENSCJPG00005005397)	ARFIP2 (ENSCJPG00005005388)	TIMM10B (ENSCJPG00005005386)	ENSCJPG00005005381	RRP8 (ENSCJPG00005005367)	ILK (ENSCJPG00005005363)	TPP1 (ENSCJPG00005005361)	ENSCJPG00005005359	LCMT2 (ENSCJPG00005005357)	ENSCJPG00005005355
Phasianidae_b	ANCESTRAL SPECIES	45						ENSGT01100000263554.A.a	ENSGT00390000010849.a.e.b	ENSGT00390000010849.b	ENSGT00940000157809.e.a.a.b	ENSGT01090000260043.a.a.a.b.b.a.a.a	ENSGT00950000183144.A.c	ENSGT01100000263554.A.b	ENSGT01090000260043.a.a.a.b.b.a.b	ENSGT00940000156437.j.a.a	ENSGT01090000260043.a.a.a.b.b.b	ENSGT00390000002732.n #22	ENSGT00950000182936.a.a.a	ENSGT00940000159415	ENSGT01100000263563.c.a	ENSGT00950000183182.b	ENSGT00390000000002.a.b	ENSGT00390000009178	ENSGT00940000158173	ENSGT00950000183040.A.a	ENSGT00450000040326	ENSGT00940000155956	ENSGT00390000009368	ENSGT00390000008684	ENSGT00940000163671.b	ENSGT00940000162599
Chicken	MODERN SPECIES		ENSGALG00010003326	ENSGALG00010003342	ENSGALG00010003339	OR52R1 (ENSGALG00010003544)	OR51M1 (ENSGALG00010003349)	HBBA (ENSGALG00010003868)	ENSGALG00010003371	ENSGALG00010003379	HBE1 (ENSGALG00010003363)	ENSGALG00010003389	FOLR1 (ENSGALG00010003415)	ENSGALG00010003450	OR52B2L (ENSGALG00010003487)	ENSGALG00010003494	ENSGALG00010003499	RPS11 (ENSGALG00010001654) #22	FHIP1B (ENSGALG00010001551)	CNGA4 (ENSGALG00010001553)	CCKBR (ENSGALG00010001558)	SMPD1 (ENSGALG00010001570)	APBB1 (ENSGALG00010001605)	HPX (ENSGALG00010001612)	TRIM3 (ENSGALG00010001617)	ARFIP2 (ENSGALG00010001627)	TIMM10B (ENSGALG00010001635)	ENSGALG00010001674	ILK (ENSGALG00010001689)	TAF10 (ENSGALG00010001697)	TPP1 (ENSGALG00010003814)	ENSGALG00010001704	LCMT2 (ENSGALG00010001710)
Neognathae_b	ANCESTRAL SPECIES	38	ENSGT00940000160721	ENSGT01030000234601.c.a.a	ENSGT00960000189458	ENSGT00390000013075.a	ENSGT00390000004140.b	ENSGT00950000183078.b.a.a	ENSGT00390000016789	ENSGT00940000161220	ENSGT00390000000938	ENSGT00950000183144.A.d	ENSGT00950000183144.A.c	ENSGT01100000263554.A.b	ENSGT01090000260043.a.a.a.b.b.a.b	ENSGT00940000156437.j.a.a	ENSGT01090000260043.a.a.a.b.b.b	ENSGT00390000002732.n #22	ENSGT00950000182936.a.a.a	ENSGT00940000159415	ENSGT01100000263563.c.a	ENSGT00950000183182.b	ENSGT00390000000002.a.b	ENSGT00390000009178	ENSGT00940000158173	ENSGT00950000183040.A.a	ENSGT00450000040326	ENSGT00390000006189	ENSGT00940000155956	ENSGT00390000009368	ENSGT00390000008684	ENSGT00940000163671.b	ENSGT00940000162599
Neognathae_c	ANCESTRAL SPECIES	11	ENSGT01100000263528.A.b.b	ENSGT01100000263528.A.b.a	ENSGT01100000263490.C.a	ENSGT01100000263490.D.a.a	ENSGT00960000189084.j	ENSGT00940000157809.f.b.a.b	ENSGT00940000157809.f.b.a.a	ENSGT00960000189084.i	ENSGT00940000157809.f.a	ENSGT00390000010849.b.b	ENSGT00950000183144.A.c	ENSGT01100000263554.A.b	ENSGT01090000260043.a.a.a.b.b.a.b	ENSGT00940000156437.j.a.a	ENSGT01090000260043.a.a.a.b.b.b	ENSGT00390000002732.n #22	ENSGT00950000182936.a.a.a	ENSGT00940000159415	ENSGT01100000263563.c.a	ENSGT00950000183182.b	ENSGT00390000000002.a.b	ENSGT00390000009178	ENSGT00940000158173	ENSGT00950000183040.A.a	ENSGT00450000040326	ENSGT00940000155956	ENSGT00390000009368	ENSGT00390000008684	ENSGT00940000163671.b	ENSGT00940000162599
Golden eagle	MODERN SPECIES	10	ENSACCG00020010456	ENSACCG00020010465	OR52R1 (ENSACCG00020010475)	ENSACCG00020010520	ENSACCG00020010578	ENSACCG00020010594	ENSACCG00020010609	ENSACCG00020010616	ENSACCG00020010627	ENSACCG00020010635	ENSACCG00020010643	OR51Q1 (ENSACCG00020010649)	ENSACCG00020010657	ENSACCG00020010662	ENSACCG00020010672	RPS11 (ENSACCG00020010680) #22	FHIP1B (ENSACCG00020010699)	CNGA4 (ENSACCG00020010709)	CCKBR (ENSACCG00020010725)	SMPD1 (ENSACCG00020010734)	APBB1 (ENSACCG00020010749)	HPX (ENSACCG00020010777)	TRIM3 (ENSACCG00020010804)	ARFIP2 (ENSACCG00020010820)	ENSACCG00020010833	ENSACCG00020010860	ILK (ENSACCG00020010887)	TAF10 (ENSACCG00020010904)	TPP1 (ENSACCG00020010919)	ENSACCG00020010926	ENSACCG00020010940
Passeriformes	ANCESTRAL SPECIES	1		ENSGT00940000162599	ENSGT00940000163671.b	ENSGT00390000008684	ENSGT00390000009368	ENSGT00940000155956	ENSGT00390000006189	ENSGT00450000040326	ENSGT00950000183040.A.a	ENSGT00940000158173	ENSGT00390000000002.a.b	ENSGT00950000183182.b	ENSGT01100000263563.c.a	ENSGT00940000159415	ENSGT00950000182936.a.a.a	ENSGT00390000002732.n #22	ENSGT01090000260043.a.a.a.b.b.b	ENSGT01090000260043.a.a.a.b.b.a.b	ENSGT00950000183144.A.c	ENSGT00950000183144.A.d	ENSGT00390000000938	ENSGT00940000161220	ENSGT00390000016789	ENSGT00950000183078.b.a.a	ENSGT00390000004140.b	ENSGT00390000013075.a	ENSGT00960000189458	ENSGT00390000016499	ENSGT00390000000455.a	ENSGT00940000158923	ENSGT00940000164659
Great tit	MODERN SPECIES		TPP1 (ENSPMJG00000005682)	TAF10 (ENSPMJG00000005681)	ILK (ENSPMJG00000005678)	ENSPMJG00000005677	ENSPMJG00000005672	ENSPMJG00000005669	ENSPMJG00000005659	ENSPMJG00000005658	ARFIP2 (ENSPMJG00000005656)	TRIM3 (ENSPMJG00000005653)	APBB1 (ENSPMJG00000005651)	SMPD1 (ENSPMJG00000005650)	CCKBR (ENSPMJG00000005649)	CNGA4 (ENSPMJG00000005623)	FHIP1B (ENSPMJG00000005493)	RPS11 (ENSPMJG00000005488) #22	ENSPMJG00000005486	ENSPMJG00000005482	ENSPMJG00000005480	ENSPMJG00000005479	ENSPMJG00000005478	ENSPMJG00000005452	ENSPMJG00000005451	ENSPMJG00000005450	ENSPMJG00000005449	ENSPMJG00000005448	NUP98 (ENSPMJG00000000924)	ENSPMJG00000000891	RHOG (ENSPMJG00000000889)	STIM1 (ENSPMJG00000000616)	RRM1 (ENSPMJG00000000066)
Amniota	DUPLICATION
Amniota	ANCESTRAL SPECIES																	ENSGT00390000002732.m.a ##22
Mammalia	ANCESTRAL SPECIES																	ENSGT00390000002732.m.a ##22
Theria	ANCESTRAL SPECIES																	ENSGT00390000002732.m.a ##22
Eutheria	ANCESTRAL SPECIES																	ENSGT00390000002732.m.a ##22
Boreoeutheria	ANCESTRAL SPECIES	174															ENSGT00390000010799.u.b.a.a.b ##21	ENSGT00390000002732.m.a ##22
Laurasiatheria	ANCESTRAL SPECIES	158															ENSGT00390000010799.u.b.a.a.b ##21	ENSGT00390000002732.m.a ##22
Laurasiatheria_a	ANCESTRAL SPECIES	160															ENSGT00390000010799.u.b.a.a.b ##21	ENSGT00390000002732.m.a ##22
Laurasiatheria_b	ANCESTRAL SPECIES																	ENSGT00390000002732.m.a ##22
Carnivora	ANCESTRAL SPECIES																	ENSGT00390000002732.m.a ##22
Caniformia	ANCESTRAL SPECIES																	ENSGT00390000002732.m.a ##22
Canidae	ANCESTRAL SPECIES																	ENSGT00390000002732.m.a ##22
Canis_lupus	ANCESTRAL SPECIES	12	ENSGT00940000155429.b	ENSGT00940000160838	ENSGT00950000183175.B.a	ENSGT00940000162796	ENSGT00940000161160	ENSGT00940000158553.b.b	ENSGT00940000157197	ENSGT00940000160186	ENSGT00910000144291.m	ENSGT00390000003426.c	ENSGT00940000160017	ENSGT00390000000537	ENSGT00940000153451.a.a.b	ENSGT00940000158129	ENSGT00950000182938.a	ENSGT00390000002732.m.a ##22	ENSGT00940000158761	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000155857	ENSGT00940000159824	ENSGT00390000000483.a.a	ENSGT00640000091672	ENSGT00940000154998.a.a	ENSGT00390000008496.i.a	ENSGT00940000154979	ENSGT00390000005989.a	ENSGT00940000158996	ENSGT00390000014412	ENSGT00390000007125.b	ENSGT00940000156866.fb	ENSGT00530000063113.C
Dingo	MODERN SPECIES	324	EIF4E1B (ENSCAFG00020011562)	SNCB (ENSCAFG00020011551)	GPRIN1 (ENSCAFG00020011549)	CDHR2 (ENSCAFG00020011543)	RNF44 (ENSCAFG00020011531)	FAF2 (ENSCAFG00020011523)	CLTB (ENSCAFG00020011522)	ENSCAFG00020011512	NOP16 (ENSCAFG00020011505)	ARL10 (ENSCAFG00020011500)	KIAA1191 (ENSCAFG00020011491)	SIMC1 (ENSCAFG00020011485)	ENSCAFG00020011479	THOC3 (ENSCAFG00020011477)	CPLX2 (ENSCAFG00020011467)	ENSCAFG00020011464 ##22	HRH2 (ENSCAFG00020011462)	SFXN1 (ENSCAFG00020011449)	ENSCAFG00020011446	DRD1 (ENSCAFG00020011444)	MSX2 (ENSCAFG00020011431)	NSG2 (ENSCAFG00020011410)	C5orf47 (ENSCAFG00020011376)	CPEB4 (ENSCAFG00020011285)	ENSCAFG00020011279	ENSCAFG00020011274	STC2 (ENSCAFG00020011270)	NKX2-5 (ENSCAFG00020011268)	BNIP1 (ENSCAFG00020011264)	CREBRF (ENSCAFG00020011261)	ENSCAFG00020011259
Dog	MODERN SPECIES	32	TSPAN17 (ENSCAFG00845012066)	EIF4E1B (ENSCAFG00845012098)	GPRIN1 (ENSCAFG00845012133)	CDHR2 (ENSCAFG00845012169)	RNF44 (ENSCAFG00845012289)	FAF2 (ENSCAFG00845012363)	CLTB (ENSCAFG00845012437)	HIGD2A (ENSCAFG00845012471)	NOP16 (ENSCAFG00845012492)	ARL10 (ENSCAFG00845012509)	KIAA1191 (ENSCAFG00845012621)	SIMC1 (ENSCAFG00845012793)	THOC3 (ENSCAFG00845012878)	HRH2 (ENSCAFG00845000234)	HRH2 (ENSCAFG00845000310)	ENSCAFG00845000366 ##22	SFXN1 (ENSCAFG00845000413)	DRD1 (ENSCAFG00845000442)	MSX2 (ENSCAFG00845000450)	CPEB4 (ENSCAFG00845000467)	C5orf47 (ENSCAFG00845000487)	CPEB4 (ENSCAFG00845000511)	ENSCAFG00845000535	ENSCAFG00845000564	STC2 (ENSCAFG00845000605)	NKX2-5 (ENSCAFG00845000634)	BNIP1 (ENSCAFG00845000706)	CREBRF (ENSCAFG00845000727)	ATP6V0E1 (ENSCAFG00845000758)	ERGIC1 (ENSCAFG00845000852)	DUSP1 (ENSCAFG00845000953)
Laurasiatheria_c	ANCESTRAL SPECIES																	ENSGT00390000002732.m.a ##22
Equus	ANCESTRAL SPECIES	1	ENSGT00940000158693.C #8	ENSGT00940000163157 #9	ENSGT00940000165610	ENSGT00940000163283 #10	ENSGT00940000161485 #11	ENSGT00950000182956.b.a #12	ENSGT00390000014026 #13	ENSGT00420000029926 #14	ENSGT00410000026259 #15	ENSGT00730000111841 #16	ENSGT00940000159110 #17	ENSGT00510000048192 #18	ENSGT00940000161135 #19	ENSGT00530000064424 #20	ENSGT00390000010799.u.b.a.a.b ##21	ENSGT00390000002732.m.a ##22	ENSGT00390000010799.u.b.a.a.a.b ##21	ENSGT00390000002732.n #22	ENSGT01100000263475.d.b #23	ENSGT01010000222360.G #24	ENSGT00390000015505 #25	ENSGT00950000183084.b.a.a #26	ENSGT00440000037417.B.p.a #27	ENSGT00940000160972 #28	ENSGT00950000183205.b.a.b.a.a #29	ENSGT00940000160569 #31	ENSGT00940000154318.B #32	ENSGT00940000154700 #33	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #34	ENSGT00390000002611 #35
Horse	MODERN SPECIES	1	HRC (ENSECAG00000020005) #7	TRPM4 (ENSECAG00000021852) #8	ENSECAG00000039171 #9	SLC6A16 (ENSECAG00000012631) #10	CD37 (ENSECAG00000014032) #11	TEAD2 (ENSECAG00000018010) #12	DKKL1 (ENSECAG00000024239) #13	PTH2 (ENSECAG00000008078) #15	KASH5 (ENSECAG00000024488) #14	GFY (ENSECAG00000038182) #16	SLC17A7 (ENSECAG00000008206) #17	PIH1D1 (ENSECAG00000021267) #18	ALDH16A1 (ENSECAG00000023437) #19	ENSECAG00000038488 #20	RPL13A (ENSECAG00000015832) ##21	RPS11 (ENSECAG00000000370) ##22	FCGRT (ENSECAG00000002855) #23	RCN3 (ENSECAG00000010512) #24	NOSIP (ENSECAG00000010590) #25	PRRG2 (ENSECAG00000011504) #26	ENSECAG00000012525 #27	RRAS (ENSECAG00000016716) #28	ENSECAG00000017909 #29	IRF3 (ENSECAG00000018265) #31	BCL2L12 (ENSECAG00000022614) #32	PRMT1 (ENSECAG00000024076) #33	CPT1C (ENSECAG00000015556) #34	TSKS (ENSECAG00000023945) #35	AP2A1 (ENSECAG00000007134) #36	FUZ (ENSECAG00000019538) #37	MED25 (ENSECAG00000008563)
Amniota	ANCESTRAL SPECIES																	ENSGT00390000002732.m.b ##22
Mammalia	ANCESTRAL SPECIES																	ENSGT00390000002732.m.b ##22
Theria	ANCESTRAL SPECIES																	ENSGT00390000002732.m.b ##22
Eutheria	ANCESTRAL SPECIES																	ENSGT00390000002732.m.b ##22
Boreoeutheria	ANCESTRAL SPECIES																	ENSGT00390000002732.m.b ##22
Laurasiatheria	ANCESTRAL SPECIES																	ENSGT00390000002732.m.b ##22
Laurasiatheria_a	ANCESTRAL SPECIES																	ENSGT00390000002732.m.b ##22
Laurasiatheria_b	ANCESTRAL SPECIES																	ENSGT00390000002732.m.b ##22
Carnivora	ANCESTRAL SPECIES																	ENSGT00390000002732.m.b ##22
Caniformia	ANCESTRAL SPECIES																	ENSGT00390000002732.m.b ##22
Canidae	ANCESTRAL SPECIES																	ENSGT00390000002732.m.b ##22
Canis_lupus	ANCESTRAL SPECIES																	ENSGT00390000002732.m.b ##22
Dog	MODERN SPECIES	36	PLEKHH1 (ENSCAFG00845003414)	TMEM229B (ENSCAFG00845003381)	PLEK2 (ENSCAFG00845003328)	EIF2S1 (ENSCAFG00845003308)	ATP6V1D (ENSCAFG00845003279)	PALS1 (ENSCAFG00845003252)	GARIN2 (ENSCAFG00845003237)	ENSCAFG00845003227	ENSCAFG00845003219	ENSCAFG00845003201	GPHN (ENSCAFG00845003022)	CCDC196 (ENSCAFG00845002927)	ENSCAFG00845002877	ENSCAFG00845002859	ENSCAFG00845002840	ENSCAFG00845002829 ##22	FUT8 (ENSCAFG00845002810)	MAX (ENSCAFG00845002666)	FNTB (ENSCAFG00845002568)	ENSCAFG00845002535	GPX2 (ENSCAFG00845002511)	ENSCAFG00845002489	SPTB (ENSCAFG00845002451)	PLEKHG3 (ENSCAFG00845002267)	PPP1R36 (ENSCAFG00845002212)	HSPA2 (ENSCAFG00845002192)	ZBTB1 (ENSCAFG00845002174)	ZBTB25 (ENSCAFG00845002081)	AKAP5 (ENSCAFG00845002054)	MTHFD1 (ENSCAFG00845002014)	ENSCAFG00845001990
Dingo	MODERN SPECIES	161	TMEM229B (ENSCAFG00020006534)	PLEK2 (ENSCAFG00020006535)	EIF2S1 (ENSCAFG00020006539)	ATP6V1D (ENSCAFG00020006543)	PALS1 (ENSCAFG00020006548)	GARIN2 (ENSCAFG00020006693)	GPHN (ENSCAFG00020006734)	ENSCAFG00020006739	ENSCAFG00020006742	ENSCAFG00020006743	ENSCAFG00020006753	CCDC196 (ENSCAFG00020006761)	FUT8 (ENSCAFG00020006786)	ENSCAFG00020006817	ENSCAFG00020006820	ENSCAFG00020006824 ##22	MAX (ENSCAFG00020006853)	FNTB (ENSCAFG00020006858)	RAB15 (ENSCAFG00020006867)	GPX2 (ENSCAFG00020006873)	ENSCAFG00020006879	SPTB (ENSCAFG00020006916)	PLEKHG3 (ENSCAFG00020007103)	PPP1R36 (ENSCAFG00020007140)	HSPA2 (ENSCAFG00020007157)	ZBTB1 (ENSCAFG00020007170)	ZBTB25 (ENSCAFG00020007174)	AKAP5 (ENSCAFG00020007180)	ENSCAFG00020007183	ENSCAFG00020007205	ENSCAFG00020007211
Laurasiatheria_c	ANCESTRAL SPECIES																	ENSGT00390000002732.m.b ##22
Chiroptera	ANCESTRAL SPECIES																	ENSGT00390000002732.m.b ##22
Microchiroptera	ANCESTRAL SPECIES																	ENSGT00390000002732.m.b ##22
Greater horseshoe bat	MODERN SPECIES	8	GLYCTK (ENSRFEG00010017030)	DNAH1 (ENSRFEG00010017179)	BAP1 (ENSRFEG00010017990)	PHF7 (ENSRFEG00010018334)	SEMA3G (ENSRFEG00010018373)	TNNC1 (ENSRFEG00010018419)	NISCH (ENSRFEG00010018464)	STAB1 (ENSRFEG00010018575)	NT5DC2 (ENSRFEG00010020356)	UQCC5 (ENSRFEG00010020406)	PBRM1 (ENSRFEG00010020466)	ENSRFEG00010020600	GLT8D1 (ENSRFEG00010020644)	ENSRFEG00010020673	NEK4 (ENSRFEG00010020693)	ENSRFEG00010020738 ##22	ITIH1 (ENSRFEG00010020810)	ITIH4 (ENSRFEG00010021058)	MUSTN1 (ENSRFEG00010021121)	STIMATE (ENSRFEG00010021137)	SFMBT1 (ENSRFEG00010021160)	RFT1 (ENSRFEG00010021195)	PRKCD (ENSRFEG00010021234)	TKT (ENSRFEG00010021261)	DCP1A (ENSRFEG00010021288)	CACNA1D (ENSRFEG00010021388)	CHDH (ENSRFEG00010021510)	IL17RB (ENSRFEG00010021525)	ACTR8 (ENSRFEG00010021547)	SELENOK (ENSRFEG00010021571)	ENSRFEG00010021590
Sauria	ANCESTRAL SPECIES																	ENSGT00390000002732.m.b ##22
Lepidosauria	ANCESTRAL SPECIES																	ENSGT00390000002732.m.b ##22
Episquamata	ANCESTRAL SPECIES																	ENSGT00390000002732.m.b ##22
Toxicofera	ANCESTRAL SPECIES																	ENSGT00390000002732.m.b ##22
Elapidae	ANCESTRAL SPECIES																	ENSGT00390000002732.m.b ##22
Elapidae_a	ANCESTRAL SPECIES																	ENSGT00390000002732.m.b ##22
Acanthophiinae	ANCESTRAL SPECIES																	ENSGT00390000002732.m.b ##22
Mainland tiger snake	MODERN SPECIES	1301															ENSNSUG00000011380	ENSNSUG00000011379 ##22
Archelosauria	ANCESTRAL SPECIES																	ENSGT00390000002732.m.b ##22
Archosauria	ANCESTRAL SPECIES																	ENSGT00390000002732.m.b ##22
Aves	ANCESTRAL SPECIES																	ENSGT00390000002732.m.b ##22
Neognathae	ANCESTRAL SPECIES																	ENSGT00390000002732.m.b ##22
Galloanserae	ANCESTRAL SPECIES																	ENSGT00390000002732.m.b ##22
Anatidae	ANCESTRAL SPECIES																	ENSGT00390000002732.m.b ##22
Duck	MODERN SPECIES		ENSAPLG00000000847	ENSAPLG00000014541	ENSAPLG00000000841	ENSAPLG00000000833	ENSAPLG00000000832	OR51E2 (ENSAPLG00000000823)	OR52R1 (ENSAPLG00000000781)	ENSAPLG00000022038	ENSAPLG00000022404	ENSAPLG00000023947	ENSAPLG00000001553	ENSAPLG00000002208	ENSAPLG00000003503	ENSAPLG00000015040	ENSAPLG00000011624	RPS11 (ENSAPLG00000010997) ##22	ENSAPLG00000023002	FHIP1B (ENSAPLG00000006910)	SMPD1 (ENSAPLG00000030260)	CCKBR (ENSAPLG00000006606)	APBB1 (ENSAPLG00000021238)	HPX (ENSAPLG00000028385)	TIMM10B (ENSAPLG00000025254)	ENSAPLG00000009463	ENSAPLG00000020105	ENSAPLG00000024979	ENSAPLG00000029753	ENSAPLG00000029556	ENSAPLG00000024523	ENSAPLG00000010069
Anura	ANCESTRAL SPECIES	595															ENSGT00390000010799 #21	ENSGT00390000002732 #22
Frog	MODERN SPECIES	1													ENSXETG00000047161	rpl13a (ENSXETG00000014144) #21	ENSXETG00000047330	rps11 (ENSXETG00000043869) #22	trim25 (ENSXETG00000048454)	coil (ENSXETG00000041941)	scpep1 (ENSXETG00000020061)	ENSXETG00000049207	rab11fip4 (ENSXETG00000047529)	utp6 (ENSXETG00000020057)	suz12 (ENSXETG00000020055)	crlf3 (ENSXETG00000020053)	atad5 (ENSXETG00000025818)	tefm (ENSXETG00000020052)	adap2 (ENSXETG00000043318)	ENSXETG00000049060	rhot1 (ENSXETG00000020040)	RHBDL3 (ENSXETG00000047111)	ENSXETG00000045511
Leishan spiny toad	DUPLICATION
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	8	ENSLLEG00000019140	ENSLLEG00000019081	ENSLLEG00000018866	GPAA1 (ENSLLEG00000018465)	EXOSC4 (ENSLLEG00000018367)	OPLAH (ENSLLEG00000018132)	ENSLLEG00000017992	ENSLLEG00000017969	ENSLLEG00000017770	ENSLLEG00000016463	KHDRBS3 (ENSLLEG00000016295)	ENSLLEG00000016270	ENSLLEG00000016176	ENSLLEG00000016059	ENSLLEG00000015716 #21	ENSLLEG00000015623 #22	MFSD3 (ENSLLEG00000015544)	ENSLLEG00000015452	ENSLLEG00000015396	ENSLLEG00000015382	ENSLLEG00000015361	ENSLLEG00000015307	ENSLLEG00000015240	ENSLLEG00000015183	ENSLLEG00000015157	FBXL6 (ENSLLEG00000015007)	SCRT1 (ENSLLEG00000014955)	ENSLLEG00000014812	ENSLLEG00000014736	DGAT1 (ENSLLEG00000014578)	ENSLLEG00000024304
Leishan spiny toad	MODERN SPECIES	5	ENSLLEG00000001088	NUCKS1 (ENSLLEG00000001102)	RAB29 (ENSLLEG00000001126)	SLC41A1 (ENSLLEG00000001142)	GGNBP2 (ENSLLEG00000001180)	PIGW (ENSLLEG00000001206)	MYO19 (ENSLLEG00000001213)	ZNHIT3 (ENSLLEG00000001287)	DCAF6 (ENSLLEG00000001357)	CNTN2 (ENSLLEG00000001673)	ENSLLEG00000001877	ENSLLEG00000001937	ENSLLEG00000001982	LIPT1 (ENSLLEG00000002301)	ENSLLEG00000002352	ENSLLEG00000002521 #22	ENSLLEG00000002537	BYSL (ENSLLEG00000002547)	MED20 (ENSLLEG00000002575)	USP49 (ENSLLEG00000002603)	ENSLLEG00000002630	ENSLLEG00000002657	ENSLLEG00000002705	ENSLLEG00000002731	ENSLLEG00000002748	RBBP5 (ENSLLEG00000002837)	ENSLLEG00000002944	TMEM81 (ENSLLEG00000002983)	ENSLLEG00000002994	ENSLLEG00000003038	RAB7B (ENSLLEG00000003186)
Leishan spiny toad	MODERN SPECIES	6	ENSLLEG00000010021	ENSLLEG00000010033	AGBL1 (ENSLLEG00000010067)	ENSLLEG00000010448	ENSLLEG00000010462	KLHL25 (ENSLLEG00000010478)	AKAP13 (ENSLLEG00000010520)	ENSLLEG00000010841	ENSLLEG00000010893	SV2B (ENSLLEG00000004324)	ENSLLEG00000004331	SLCO3A1 (ENSLLEG00000004337)	ENSLLEG00000004344	ENSLLEG00000004349	ENSLLEG00000004353	ENSLLEG00000004356 #22	ST8SIA2 (ENSLLEG00000004365)	ENSLLEG00000004376	ENSLLEG00000004380	ENSLLEG00000004385	FAM174B (ENSLLEG00000004394)	ENSLLEG00000004402	ENSLLEG00000004418	CHD2 (ENSLLEG00000004448)	ENSLLEG00000004519	RGMA (ENSLLEG00000004523)	ENSLLEG00000004528	ENSLLEG00000004535	ENSLLEG00000004543	ENSLLEG00000004546	ENSLLEG00000004551
Coelacanth	MODERN SPECIES	552	ENSLACG00000014748	ENSLACG00000014592	ENSLACG00000013703	ENSLACG00000013062	ENSLACG00000012797 #18	PRL (ENSLACG00000012742)	ENSLACG00000012241	DHDH (ENSLACG00000011719)	ENSLACG00000010885	ENSLACG00000022321 #14	ENSLACG00000010046	ENSLACG00000009209 ##12	ENSLACG00000007841 #11	slc6a16b (ENSLACG00000006840) #9	ENSLACG00000006256	RPS11 (ENSLACG00000001903) #22
Actinopterygii	ANCESTRAL SPECIES	1175															ENSGT00960000187074	ENSGT00390000002732 #22
Reedfish	MODERN SPECIES	2	ENSECRG00000015384	uba1 (ENSECRG00000015428)	ENSECRG00000015499	ENSECRG00000015520	ENSECRG00000015584	ENSECRG00000015597	ENSECRG00000015626	tbc1d17 (ENSECRG00000015677)	ENSECRG00000015725	bcat2 (ENSECRG00000015785)	ENSECRG00000016058	ENSECRG00000020669	ENSECRG00000020680	kcnc3a (ENSECRG00000020718)	ENSECRG00000020831	rps11 (ENSECRG00000020848) #22	lin7b (ENSECRG00000020880)	PPFIA3 (ENSECRG00000020920)	ENSECRG00000021011	ENSECRG00000021087	NTF4 (ENSECRG00000021095)	ENSECRG00000021113	snrnp70 (ENSECRG00000021135)	ENSECRG00000021156	tbc1d25 (ENSECRG00000021177)	porcnl (ENSECRG00000021214)	ENSECRG00000021250	ENSECRG00000021270	ENSECRG00000021288	ENSECRG00000021296	slc17a7a (ENSECRG00000021336) #17
Neopterygii	ANCESTRAL SPECIES	955															ENSGT00960000187074	ENSGT00390000002732 #22
Spotted gar	MODERN SPECIES	258															kcnc3b (ENSLOCG00000006820)	rps11 (ENSLOCG00000006848) #22	ENSLOCG00000006864	ENSLOCG00000006878	NTF4 (ENSLOCG00000006896)	ENSLOCG00000006906
Osteoglossocephalai	ANCESTRAL SPECIES	83	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT00940000161121	ENSGT01050000244900.a.b	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b	ENSGT00940000161346	ENSGT00390000009532.A.d.b	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000160292	ENSGT00940000153222.a.b.a	ENSGT00940000164903.a	ENSGT00940000161135 #19	ENSGT00950000182841.a	ENSGT01030000235305	ENSGT00940000160609.f	ENSGT00510000048192 #18	ENSGT00940000164511.C	ENSGT00980000198607	ENSGT00950000182818.A	ENSGT00940000154700 #33	ENSGT00950000182838.A.a.a #36	ENSGT00940000167194	ENSGT00940000160972 #28
Osteoglossiformes	ANCESTRAL SPECIES	187																ENSGT00390000002732 #22	ENSGT00940000160292	ENSGT00940000164903.a.g	ENSGT00940000161135 #19	ENSGT00950000182841.a.g	ENSGT00940000166481.g	ENSGT00940000160609.f	ENSGT00510000048192 #18	ENSGT01060000248595.b.a.b.b.a.a #34	ENSGT00940000164511.C.r.a	ENSGT00980000198607	ENSGT00950000182818.A.m	ENSGT00940000154700.c #33	ENSGT00950000182838.A.a.a.g #36	ENSGT00940000167194	ENSGT00940000160972 #28
P. kingsleyae	MODERN SPECIES	58	tspan4b (ENSPKIG00000019030)	rcn3 (ENSPKIG00000019083) ##24	ENSPKIG00000019098	TRPM4 (ENSPKIG00000019124) #8	ENSPKIG00000019247 #29	ENSPKIG00000019283	PRR12 (ENSPKIG00000019321) #27	rras (ENSPKIG00000019373) #28	ENSPKIG00000019407	AP2A1 (ENSPKIG00000019518) #36	prmt1 (ENSPKIG00000019643) #33	prl (ENSPKIG00000019703)	si:dkey-16p21.8 (ENSPKIG00000019729)	ENSPKIG00000019764	ENSPKIG00000019879 #34	rps11 (ENSPKIG00000019942) #22	snrnp70 (ENSPKIG00000019992)	ENSPKIG00000020024	ENSPKIG00000020058	aldh16a1 (ENSPKIG00000020091) #19	ENSPKIG00000020133	syt5b (ENSPKIG00000020148)	tnnt1 (ENSPKIG00000020175)	pih1d1 (ENSPKIG00000020208) #18	dcun1d3 (ENSPKIG00000020238)	ENSPKIG00000020248	eps8l1a (ENSPKIG00000020265)	ENSPKIG00000020301 #9	SLC17A7 (ENSPKIG00000020349) #17	pold1 (ENSPKIG00000020431)	gys1 (ENSPKIG00000020552)
Asian bonytongue	MODERN SPECIES	23	cabp5b (ENSSFOG00015003598)	pitpnbl (ENSSFOG00015003623)	ypel3 (ENSSFOG00015003651)	GDPD3 (ENSSFOG00015003682)	MAPK3 (ENSSFOG00015027162)	nudt9 (ENSSFOG00015025893)	cln3 (ENSSFOG00015004024)	ALDOA (ENSSFOG00015004063)	nucb1 (ENSSFOG00015004072)	PPFIA3 (ENSSFOG00015004126)	ENSSFOG00015004265	ENSSFOG00015004441	hsd17b14 (ENSSFOG00015029443)	bcat2 (ENSSFOG00015004484)	baxa (ENSSFOG00015004539)	rps11 (ENSSFOG00015004554) #22	snrnp70 (ENSSFOG00015004562)	ENSSFOG00015004589	aldh16a1 (ENSSFOG00015027454) #19	ENSSFOG00015004824	ENSSFOG00015020517	syt5b (ENSSFOG00015005602)	tnnt1 (ENSSFOG00015005622)	pih1d1 (ENSSFOG00015005655) #18	ENSSFOG00015029154	ENSSFOG00015032473	prl (ENSSFOG00015005709)	prmt1 (ENSSFOG00015005748) #33	AP2A1 (ENSSFOG00015005800) #36	ENSSFOG00015005892	rras (ENSSFOG00015005953) #28
Clupeocephala	ANCESTRAL SPECIES	13	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00950000183080.a.b.b.b	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000160292	ENSGT00940000153222.a.b.a	ENSGT01100000263614	ENSGT00940000161135 #19	ENSGT00950000182841.a	ENSGT00940000166981	ENSGT00940000160609.f	ENSGT00510000048192 #18	ENSGT01060000248595.b.a.b.b.a.a #34	ENSGT00940000164511.C	ENSGT00980000198607	ENSGT00950000182818.A	ENSGT00940000154700 #33	ENSGT00950000182838.A.a.a #36	ENSGT00940000167194
Otomorpha	ANCESTRAL SPECIES	36	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00950000183080.a.b.b.b	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000160292	ENSGT00940000153222.a.b.a	ENSGT01100000263614	ENSGT00940000161135 #19	ENSGT00950000182841.a	ENSGT00940000166981	ENSGT00940000160609.f	ENSGT00510000048192 #18	ENSGT01060000248595.b.a.b.b.a.a #34	ENSGT00940000164511.C.q	ENSGT00980000198607	ENSGT00950000182818.A	ENSGT00940000154700 #33	ENSGT00950000182838.A.a.a #36	ENSGT00940000167194
Clupeiformes	ANCESTRAL SPECIES	84	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000164147.b	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00950000183080.a.b.b.b	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000160292	ENSGT00940000153222.a.b.a	ENSGT00940000178247	ENSGT00940000164903.b	ENSGT00940000161135 #19	ENSGT00950000182841.a	ENSGT00940000166981	ENSGT00940000160609.f	ENSGT00510000048192 #18	ENSGT01060000248595.b.a.b.b.a.a #34	ENSGT00940000164511.C.q	ENSGT00950000182818.A	ENSGT00940000154700 #33	ENSGT00950000182838.A.a.a #36	ENSGT00940000167194
Atlantic herring	MODERN SPECIES		ENSCHAG00000016815	PLEKHH3 (ENSCHAG00000016798)	tubg1 (ENSCHAG00000016741)	ENSCHAG00000016703	ENSCHAG00000016694	psmc3ip (ENSCHAG00000016650)	mlx (ENSCHAG00000016603)	FMNL1 (ENSCHAG00000014878)	SRCIN1 (ENSCHAG00000014750)	arf2a (ENSCHAG00000014725)	wnt9b (ENSCHAG00000014675)	gosr2 (ENSCHAG00000014645)	gpatch8 (ENSCHAG00000014632)	ENSCHAG00000014561	baxa (ENSCHAG00000014466)	rps11 (ENSCHAG00000014403) #22	snrnp70 (ENSCHAG00000014372)	lin7b (ENSCHAG00000014284)	CMC4 (ENSCHAG00000014272)	tbl3 (ENSCHAG00000012272)	noxo1a (ENSCHAG00000012212)	GID4 (ENSCHAG00000012185)	drc3 (ENSCHAG00000012087)	TOM1L2 (ENSCHAG00000012019)	srebf1 (ENSCHAG00000011109)	ENSCHAG00000011044	FAM20C (ENSCHAG00000010994)	nptx2a (ENSCHAG00000010954)	ENSCHAG00000010948	ENSCHAG00000010928	baiap2l1b (ENSCHAG00000010913)
Denticle herring	MODERN SPECIES	17	bcat2 (ENSDCDG00000012897)	ifi35 (ENSDCDG00000012887)	ENSDCDG00000012883	ENSDCDG00000012882	ENSDCDG00000012881	psmc3ip (ENSDCDG00000012877)	mlx (ENSDCDG00000012871)	FMNL1 (ENSDCDG00000009946)	SRCIN1 (ENSDCDG00000009840)	arf2a (ENSDCDG00000009795)	wnt9b (ENSDCDG00000009785)	gosr2 (ENSDCDG00000009778)	gpatch8 (ENSDCDG00000009763)	ENSDCDG00000009741	baxa (ENSDCDG00000009725)	rps11 (ENSDCDG00000009699) #22	ENSDCDG00000009690	ENSDCDG00000009682	lin7b (ENSDCDG00000009633)	kcnc3a (ENSDCDG00000009608)	aldh16a1 (ENSDCDG00000009570) #19	fthl27 (ENSDCDG00000009511)	syt5a (ENSDCDG00000009476)	tnnt1 (ENSDCDG00000008859)	pih1d1 (ENSDCDG00000008842) #18	ENSDCDG00000007748	prl (ENSDCDG00000005960)	prmt1 (ENSDCDG00000005341) #33	wdr46 (ENSDCDG00000005318)	ENSDCDG00000005302	ENSDCDG00000005294
Otophysi	ANCESTRAL SPECIES	11	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00950000183080.a.b.b.b	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00400000022305	ENSGT00940000154991.a.b	ENSGT00940000154991.a.a	ENSGT00940000157190.c	ENSGT00710000106813.B.a	ENSGT00940000161586.c	ENSGT01080000257365.b.a.a.b.b.f	ENSGT00390000012062	ENSGT00940000166828	ENSGT00940000166962	ENSGT00390000017613	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.f	ENSGT00390000017837.a.v	ENSGT00940000156993.d	ENSGT00940000157982.a.b
Characiphysae	ANCESTRAL SPECIES	11	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00950000183080.a.b.b.b	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00400000022305	ENSGT00940000165535	ENSGT00940000168601	ENSGT00940000154991.a.b	ENSGT00940000154991.a.a	ENSGT00940000157190.c	ENSGT00710000106813.B.a	ENSGT00940000161586.c	ENSGT01080000257365.b.a.a.b.b.e.a	ENSGT00390000012062	ENSGT00940000166828	ENSGT00940000166962	ENSGT00390000017613	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.f	ENSGT00390000017837.a.v
Characiphysae_b	ANCESTRAL SPECIES	66	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00950000183080.a.b.b.b	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00400000022305	ENSGT00940000154991.a.a	ENSGT00940000157190.c	ENSGT00940000154991.a.b	ENSGT00710000106813.B.a	ENSGT00940000161586.c	ENSGT01080000257365.b.a.a.b.b.e.a	ENSGT00390000012062	ENSGT00940000166828	ENSGT00940000166962	ENSGT00390000017613	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.f	ENSGT00390000017837.a.v	ENSGT00940000156993.d	ENSGT00940000157982.a.b
Characoidei	ANCESTRAL SPECIES	66	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00950000183080.a.b.b.b	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00400000022305	ENSGT00940000154991.a.a	ENSGT00940000157190.c	ENSGT00940000154991.a.b	ENSGT00710000106813.B.a	ENSGT00940000161586.c	ENSGT01080000257365.b.a.a.b.b.e.a	ENSGT00390000012062	ENSGT00940000166828	ENSGT00940000166962	ENSGT00390000017613	ENSGT00390000017837.a.v	ENSGT00940000156993.d	ENSGT00940000157982.a.b	ENSGT00940000163852.c.a.a
Red-bellied piranha	MODERN SPECIES	768																rps11 (ENSPNAG00000008314) #22	ENSPNAG00000008335	ENSPNAG00000000918	asic2 (ENSPNAG00000008365)	MPP3 (ENSPNAG00000008434)
Mexicana tetra	MODERN SPECIES	11	snu13a (ENSAMXG00000042994)	ENSAMXG00000032711	uqcrc2a (ENSAMXG00000015603)	ENSAMXG00000043913	nags (ENSAMXG00000031643)	ENSAMXG00000037462	gngt2a (ENSAMXG00000040925)	ENSAMXG00000041236	arf2a (ENSAMXG00000035742)	wnt9b (ENSAMXG00000034910)	gosr2 (ENSAMXG00000005255)	gpatch8 (ENSAMXG00000041683)	ENSAMXG00000005213	ENSAMXG00000005183	baxa (ENSAMXG00000037918)	rps11 (ENSAMXG00000042366) #22	ENSAMXG00000042989	ENSAMXG00000005135	ENSAMXG00000040890	ENSAMXG00000035582	TLR5 (ENSAMXG00000026012)	ENSAMXG00000029295	ENSAMXG00000041578	ENSAMXG00000041079	ENSAMXG00000026292	asic2 (ENSAMXG00000015036)	ENSAMXG00000035824	MPP3 (ENSAMXG00000015095)	ENSAMXG00000033657	ENSAMXG00000041417	ENSAMXG00000037621
Electric eel	MODERN SPECIES	785											wnt9b (ENSEEEG00000003596)	gosr2 (ENSEEEG00000003599)	gpatch8 (ENSEEEG00000003600)	ENSEEEG00000003601	baxa (ENSEEEG00000003603)	rps11 (ENSEEEG00000003606) #22	ENSEEEG00000003613	ENSEEEG00000003614
Channel catfish	MODERN SPECIES	11	zgc:86896 (ENSIPUG00000014606)	prkar1a (ENSIPUG00000014651)	rac3 (ENSIPUG00000014714)	gps1 (ENSIPUG00000014781)	dus1l (ENSIPUG00000014839)	csnk1da (ENSIPUG00000014886)	glyr1 (ENSIPUG00000014982)	ppl (ENSIPUG00000015236)	ENSIPUG00000015346	wnt9b (ENSIPUG00000015375)	Gosr2 (ENSIPUG00000015403)	gpatch8 (ENSIPUG00000015431)	ENSIPUG00000015461	ENSIPUG00000015503	baxa (ENSIPUG00000015513)	rps11 (ENSIPUG00000015554) #22	ENSIPUG00000015654	ENSIPUG00000015667	ENSIPUG00000015675	ENSIPUG00000015702	asic2 (ENSIPUG00000015756)	MPP3 (ENSIPUG00000015775)	ENSIPUG00000015823	ZNF281 (ENSIPUG00000015878)	ENSIPUG00000015904	tmem98 (ENSIPUG00000015917)	ENSIPUG00000015962	ENSIPUG00000016123	retsat.2 (ENSIPUG00000016137)	ENSIPUG00000016164	nmt1 (ENSIPUG00000016186)
Cyprinoidei	DUPLICATION
Cyprinoidei	ANCESTRAL SPECIES	56				ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00950000183080.a.b.b.b	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732.a #22	ENSGT00400000022305	ENSGT00940000154991.a.a.b.b	ENSGT00710000106813.B.a	ENSGT00940000154991.a.a.b.a	ENSGT00940000157190.c	ENSGT01050000245493	ENSGT00940000161586.c	ENSGT01080000257365.b.a.a.b.b.f	ENSGT00390000012062	ENSGT00940000166828	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.f	ENSGT00940000166962	ENSGT00390000017613	ENSGT00390000017837.a.v	ENSGT00940000156993.d
Cyprininae	ANCESTRAL SPECIES	464	ENSGT00940000156604.h.a	ENSGT00940000166174.i	ENSGT00940000159764.dc.b	ENSGT00940000156957.w	ENSGT00940000166807.j	ENSGT00390000006890.g.b	ENSGT00940000157377.a	ENSGT00940000156292.g.b.b	ENSGT00940000157961.B.a	ENSGT00950000183080.a.b.b.b.d.a	ENSGT00940000158599.e	ENSGT00950000183192.a.b.a	ENSGT00940000159523.e	ENSGT00940000156497.a.c	ENSGT01090000260003.a.b.b.b.a	ENSGT00390000002732.a #22	ENSGT00400000022305.c	ENSGT00940000154991.a.a.b.b	ENSGT00940000157190.c.a	ENSGT00710000106813.B.a.a	ENSGT00940000161586.c.c	ENSGT01080000257365.b.a.a.b.b.f.a
Cyprininae_a	ANCESTRAL SPECIES	137	ENSGT00940000156604.h.a	ENSGT00940000166174.i	ENSGT00940000159764.dc.b	ENSGT00940000156957.w	ENSGT00940000166807.j	ENSGT00390000006890.g.b	ENSGT00940000157377.a	ENSGT00940000156292.g.b.b	ENSGT00940000157961.B.a	ENSGT00950000183080.a.b.b.b.d.a	ENSGT00940000158599.e	ENSGT00950000183192.a.b.b	ENSGT00940000159523.e	ENSGT00940000156497.a.c	ENSGT01090000260003.a.b.b.b.a	ENSGT00390000002732.a #22	ENSGT00400000022305.c	ENSGT00940000154991.a.a.b.b
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	301	ENSSGRG00000042290	PLEKHH3 (ENSSGRG00000042381)	tubg1 (ENSSGRG00000042382)	ENSSGRG00000042383	psmc3ip (ENSSGRG00000042395)	ENSSGRG00000042396	mlx (ENSSGRG00000042397)	FMNL1 (ENSSGRG00000042411)	ENSSGRG00000042917	arf2a (ENSSGRG00000042924)	wnt9b (ENSSGRG00000042968)	gosr2 (ENSSGRG00000042969)	gpatch8 (ENSSGRG00000042970)	ENSSGRG00000042971	baxa (ENSSGRG00000042972)	rps11 (ENSSGRG00000042973) #22	ENSSGRG00000043010	ENSSGRG00000043012	ENSSGRG00000043013	ENSSGRG00000043014
Golden-line barbel	MODERN SPECIES	126	EZH1 (ENSSGRG00000050383)	ENSSGRG00000050364	PLEKHH3 (ENSSGRG00000050363)	tubg1 (ENSSGRG00000050304)	ENSSGRG00000050299	psmc3ip (ENSSGRG00000050297)	mlx (ENSSGRG00000050291)	FMNL1 (ENSSGRG00000050275)	ENSSGRG00000050271	arf2a (ENSSGRG00000050239)	wnt9b (ENSSGRG00000050238)	gosr2 (ENSSGRG00000050235)	gpatch8 (ENSSGRG00000050234)	ENSSGRG00000050232	baxa (ENSSGRG00000050231)	rps11 (ENSSGRG00000050214) #22	ENSSGRG00000050211	ENSSGRG00000050210
Common carp reference	MODERN SPECIES	1	EZH1 (ENSCCRG00000020895)	ENSCCRG00000001147	PLEKHH3 (ENSCCRG00000047160)	tubg1 (ENSCCRG00000047141)	ENSCCRG00000064129	psmc3ip (ENSCCRG00000018558)	mlx (ENSCCRG00000056623)	ENSCCRG00000018496	ENSCCRG00000018415	arf2a (ENSCCRG00000005312)	wnt9b (ENSCCRG00000018400)	gosr2 (ENSCCRG00000039650)	gpatch8 (ENSCCRG00000054555)	ENSCCRG00000036645	baxa (ENSCCRG00000073863)	rps11 (ENSCCRG00000070361) #22	ENSCCRG00000074318	asic2 (ENSCCRG00000072603)	ENSCCRG00000061355	ENSCCRG00000071154	ENSCCRG00000046275	ENSCCRG00000067467	ENSCCRG00000049882	ENSCCRG00000006317	tmem98 (ENSCCRG00000051132)	ENSCCRG00000012002	plcd3a (ENSCCRG00000080337)	ENSCCRG00000008650	ENSCCRG00000062380	ENSCCRG00000041170	zgc:165423 (ENSCCRG00000075158)
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	1794	ENSCARG00000038912	PLEKHH3 (ENSCARG00000038810)	tubg1 (ENSCARG00000038692)	ENSCARG00000038668	ENSCARG00000038656	psmc3ip (ENSCARG00000038634)	mlx (ENSCARG00000038598)	FMNL1 (ENSCARG00000038200)	SRCIN1 (ENSCARG00000038080)	arf2a (ENSCARG00000038066)	wnt9b (ENSCARG00000038052)	gosr2 (ENSCARG00000038048)	gpatch8 (ENSCARG00000038001)	ENSCARG00000037903	baxa (ENSCARG00000037829)	rps11 (ENSCARG00000037708) #22	ENSCARG00000037596
Goldfish	MODERN SPECIES	311																rps11 (ENSCARG00000063323) #22	ENSCARG00000063269
Zebrafish	MODERN SPECIES	18	PLEKHH3 (ENSDARG00000070174)	tubg1 (ENSDARG00000015610)	ENSDARG00000059804	psmc3ip (ENSDARG00000037892)	mlx (ENSDARG00000037891)	FMNL1 (ENSDARG00000055713)	SRCIN1 (ENSDARG00000059773)	arf2a (ENSDARG00000014763)	wnt9b (ENSDARG00000037889)	gosr2 (ENSDARG00000053070)	gpatch8 (ENSDARG00000059768)	ENSDARG00000074060	ENSDARG00000096233	ENSDARG00000089129	baxa (ENSDARG00000020623)	rps11 (ENSDARG00000053058) #22	ENSDARG00000096229	asic2 (ENSDARG00000006849)	ENSDARG00000089021	MPP3 (ENSDARG00000015184)	ENSDARG00000091834	ZNF281 (ENSDARG00000000567)	ENSDARG00000059747	si:dkey-106c17.2 (ENSDARG00000094994)	tmem98 (ENSDARG00000059743)	ENSDARG00000017036	ENSDARG00000030163	retsat.2 (ENSDARG00000018600)	retsat.1 (ENSDARG00000070140)	ENSDARG00000089377	nmt1a (ENSDARG00000052966)
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT00390000002732.b #22
Cyprininae	ANCESTRAL SPECIES	116	ENSGT00940000156604.h.b	ENSGT00940000166174.j	ENSGT00940000159764.dc.a	ENSGT00940000156957.x	ENSGT00940000166807.i	ENSGT00390000006890.g.a	ENSGT00940000157377.b	ENSGT00940000156292.g.b.a	ENSGT00940000157961.B.b	ENSGT00950000183080.a.b.b.b.d.b	ENSGT00940000158599.f	ENSGT00950000183192.a.b.b	ENSGT00940000159523.f	ENSGT00940000156497.a.d	ENSGT01090000260003.a.b.b.b.b	ENSGT00390000002732.b #22	ENSGT00940000154991.a.a.a	ENSGT00940000157190.c.b	ENSGT00710000106813.B.a.b	ENSGT00940000161586.c.d	ENSGT01080000257365.b.a.a.b.b.f.b	ENSGT00390000012062	ENSGT00940000166828.q	ENSGT00940000166962.d	ENSGT00390000017613.f	ENSGT00390000017837.a.v.a	ENSGT00940000156993.d.d	ENSGT00940000166828.r	ENSGT00940000166962.c	ENSGT00390000017613.e	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.f.a
Cyprininae_a	ANCESTRAL SPECIES	182	ENSGT00940000156604.h.b	ENSGT00940000166174.j	ENSGT00940000159764.dc.a	ENSGT00940000156957.x	ENSGT00940000166807.i	ENSGT00390000006890.g.a	ENSGT00940000157377.b	ENSGT00940000156292.g.b.a	ENSGT00940000157961.B.b	ENSGT00950000183080.a.b.b.b.d.b	ENSGT00940000158599.f	ENSGT00950000183192.a.b.a	ENSGT00940000159523.f	ENSGT00940000156497.a.d	ENSGT01090000260003.a.b.b.b.b	ENSGT00390000002732.b #22	ENSGT00940000154991.a.a.a	ENSGT00940000154991.a.a.b.a	ENSGT00940000157190.c.b	ENSGT00710000106813.B.a.b	ENSGT00940000161586.c.d	ENSGT01080000257365.b.a.a.b.b.f.b	ENSGT00390000012062	ENSGT00940000166828.q	ENSGT00940000166962.d	ENSGT00390000017613.f	ENSGT00390000017837.a.v.a	ENSGT00940000156993.d.d	ENSGT00940000157982.a.b.b	ENSGT00940000163009.b.a.a.b.a.c	ENSGT00940000163852.c.a.b.a.a.g.c
Common carp reference	MODERN SPECIES	3	EZH1 (ENSCCRG00000027440)	ENSCCRG00000029573	PLEKHH3 (ENSCCRG00000013912)	tubg1 (ENSCCRG00000005207)	ENSCCRG00000059643	psmc3ip (ENSCCRG00000075940)	mlx (ENSCCRG00000056078)	ENSCCRG00000027894	ENSCCRG00000027899	arf2a (ENSCCRG00000018405)	wnt9b (ENSCCRG00000064558)	gosr2 (ENSCCRG00000022476)	gpatch8 (ENSCCRG00000055381)	ENSCCRG00000022483	baxa (ENSCCRG00000058456)	ENSCCRG00000068014 #22	ENSCCRG00000058590	ENSCCRG00000019067	ENSCCRG00000063011	ENSCCRG00000042557	ENSCCRG00000042551	tmem98 (ENSCCRG00000065860)	ENSCCRG00000060600	ENSCCRG00000080197	retsat.2 (ENSCCRG00000004753)	ENSCCRG00000033935	ENSCCRG00000068724	ENSCCRG00000033930	ENSCCRG00000057888	nmt1a (ENSCCRG00000079152)	plcd3a (ENSCCRG00000011708)
Goldfish	MODERN SPECIES	22	EZH1 (ENSCARG00000053434)	ENSCARG00000053832	PLEKHH3 (ENSCARG00000054218)	tubg1 (ENSCARG00000054266)	ENSCARG00000054367	psmc3ip (ENSCARG00000054386)	mlx (ENSCARG00000054445)	FMNL1 (ENSCARG00000054511)	SRCIN1 (ENSCARG00000054755)	arf2a (ENSCARG00000054989)	wnt9b (ENSCARG00000055006)	gosr2 (ENSCARG00000055032)	gpatch8 (ENSCARG00000055091)	ENSCARG00000055167	baxa (ENSCARG00000055183)	RPS11 (ENSCARG00000055244) #22	ASIC2 (ENSCARG00000055319)	MPP3 (ENSCARG00000055433)	ENSCARG00000055735	ZNF281 (ENSCARG00000055752)	ENSCARG00000055764	zgc:153240 (ENSCARG00000055784)	rhot1a (ENSCARG00000055883)	ENSCARG00000057110	ENSCARG00000057530	ENSCARG00000057536	ppp4ca (ENSCARG00000057542)	nudt9 (ENSCARG00000057560)	mapk3 (ENSCARG00000057611)	gdpd3a (ENSCARG00000058572)	ypel3 (ENSCARG00000058708)
Zebrafish	MODERN SPECIES	23	ddx20 (ENSDARG00000061204)	kcnd3 (ENSDARG00000056101)	cttnbp2nlb (ENSDARG00000056091)	capza1b (ENSDARG00000056090)	wnt2bb (ENSDARG00000032234)	mov10b.1 (ENSDARG00000061177)	mov10b.2 (ENSDARG00000056065)	rhocb (ENSDARG00000018328)	tafa3b (ENSDARG00000020292)	slc16a1b (ENSDARG00000068572)	zmynd12 (ENSDARG00000017055)	rimkla (ENSDARG00000016830)	ENSDARG00000090721	si:ch211-156j16.1 (ENSDARG00000092035)	kazna (ENSDARG00000076923)	ENSDARG00000093606 #22	tmem51a (ENSDARG00000068575)	sema3b (ENSDARG00000011672)	sema3bl (ENSDARG00000007560)	zgc:136971 (ENSDARG00000055970)	ifrd2 (ENSDARG00000036811)	amt (ENSDARG00000010862)	si:dkey-20d21.12 (ENSDARG00000092123)	hyal3 (ENSDARG00000036818)	NAA80 (ENSDARG00000068590)	prkar2aa (ENSDARG00000033184)	mgll (ENSDARG00000036820)	ENSDARG00000055835	ENSDARG00000097292	wdr6 (ENSDARG00000078571)	CELSR3 (ENSDARG00000055825)
Euteleosteomorpha	ANCESTRAL SPECIES		ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00950000183080.a.b.b.b	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
Acanthomorphata	ANCESTRAL SPECIES	2	ENSGT00940000160264	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
Cod	MODERN SPECIES	11	EZH1 (ENSGMOG00000015628)	ENSGMOG00000015582	PLEKHH3 (ENSGMOG00000015562)	tubg1 (ENSGMOG00000015544)	ENSGMOG00000005432	psmc3ip (ENSGMOG00000005417)	mlx (ENSGMOG00000005397)	ENSGMOG00000005334	ENSGMOG00000005295	wnt9b (ENSGMOG00000005285)	ENSGMOG00000036064	gosr2 (ENSGMOG00000005275)	gpatch8 (ENSGMOG00000031431)	ENSGMOG00000030003	baxa (ENSGMOG00000030152)	rps11 (ENSGMOG00000005159) #22	lfng (ENSGMOG00000025707)	ENSGMOG00000005112	snx8a (ENSGMOG00000005094)	nudt1 (ENSGMOG00000005086)	MRM2 (ENSGMOG00000005078)	ELFN1 (ENSGMOG00000005062)	psmg3 (ENSGMOG00000005056)	tmem184a (ENSGMOG00000005027)	mafk (ENSGMOG00000022824)	INTS1 (ENSGMOG00000004941)	ENSGMOG00000003173	micall2a (ENSGMOG00000033554)	UNCX (ENSGMOG00000022590)	zfand2a (ENSGMOG00000004883)	galr2b (ENSGMOG00000026333)
Euacanthomorphacea	ANCESTRAL SPECIES	5	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
Pinecone sodierfish	MODERN SPECIES	22	EZH1 (ENSMMDG00005023444)	ENSMMDG00005023441	PLEKHH3 (ENSMMDG00005023440)	tubg1 (ENSMMDG00005023438)	ENSMMDG00005023435	psmc3ip (ENSMMDG00005023432)	mlx (ENSMMDG00005023428)	FMNL1 (ENSMMDG00005023244)	SRCIN1 (ENSMMDG00005023216)	ENSMMDG00005023213	wnt9b (ENSMMDG00005023212)	gosr2 (ENSMMDG00005023211)	gpatch8 (ENSMMDG00005023209)	ENSMMDG00005023206	baxa (ENSMMDG00005023205)	rps11 (ENSMMDG00005023198) #22	lfng (ENSMMDG00005023197)	TTYH3 (ENSMMDG00005023194)	snx8a (ENSMMDG00005023189)	nudt1 (ENSMMDG00005023185)	MRM2 (ENSMMDG00005023184)	ELFN1 (ENSMMDG00005023182)	psmg3 (ENSMMDG00005023181)	tmem184a (ENSMMDG00005023151)	mafk (ENSMMDG00005023140)	INTS1 (ENSMMDG00005023011)	micall2a (ENSMMDG00005022984)	ENSMMDG00005022981	zfand2a (ENSMMDG00005022978)	galr2a (ENSMMDG00005022977)	axin1 (ENSMMDG00005022975)
Percomorphaceae	ANCESTRAL SPECIES	3	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
Percomorphaceae_B	ANCESTRAL SPECIES	2	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
Percomorphaceae_C	ANCESTRAL SPECIES		ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
Percomorphaceae_D	ANCESTRAL SPECIES	1	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
Anabantaria	ANCESTRAL SPECIES	6	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
Anabantoidei	ANCESTRAL SPECIES	7	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000167841	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
Climbing perch	MODERN SPECIES	21	EZH1 (ENSATEG00000002588)	ENSATEG00000002650	PLEKHH3 (ENSATEG00000002730)	tubg1 (ENSATEG00000002776)	ENSATEG00000002830	psmc3ip (ENSATEG00000028607)	mlx (ENSATEG00000027012)	ENSATEG00000002884	ENSATEG00000002902	ENSATEG00000003174	wnt9b (ENSATEG00000003182)	gosr2 (ENSATEG00000029641)	gpatch8 (ENSATEG00000003247)	ENSATEG00000003273	baxa (ENSATEG00000003284)	rps11 (ENSATEG00000003330) #22	lfng (ENSATEG00000003362)	ENSATEG00000003393	snx8a (ENSATEG00000003460)	nudt1 (ENSATEG00000025891)	MRM2 (ENSATEG00000003512)	ENSATEG00000029098	ELFN1 (ENSATEG00000003517)	psmg3 (ENSATEG00000003548)	tmem184a (ENSATEG00000003555)	mafk (ENSATEG00000003594)	INTS1 (ENSATEG00000003599)	ENSATEG00000003792	micall2a (ENSATEG00000029688)	UNCX (ENSATEG00000003850)	zfand2a (ENSATEG00000003882)
Zig-zag eel	MODERN SPECIES	22	EZH1 (ENSMAMG00000000857)	ENSMAMG00000000979	PLEKHH3 (ENSMAMG00000001054)	tubg1 (ENSMAMG00000001087)	ENSMAMG00000001117	psmc3ip (ENSMAMG00000026094)	mlx (ENSMAMG00000028482)	ENSMAMG00000001211	ENSMAMG00000001349	ENSMAMG00000024914	wnt9b (ENSMAMG00000001566)	gosr2 (ENSMAMG00000001593)	gpatch8 (ENSMAMG00000001618)	ENSMAMG00000001651	baxa (ENSMAMG00000001693)	rps11 (ENSMAMG00000001705) #22	lfng (ENSMAMG00000001750)	ENSMAMG00000001791	snx8a (ENSMAMG00000001810)	nudt1 (ENSMAMG00000001889)	MRM2 (ENSMAMG00000001903)	ELFN1 (ENSMAMG00000001912)	psmg3 (ENSMAMG00000025041)	tmem184a (ENSMAMG00000001934)	mafk (ENSMAMG00000001966)	INTS1 (ENSMAMG00000001974)	ENSMAMG00000027644	micall2a (ENSMAMG00000027070)	UNCX (ENSMAMG00000002191)	zfand2a (ENSMAMG00000002206)	ENSMAMG00000025020
Carangaria	ANCESTRAL SPECIES	4	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
Carangaria_A	DUPLICATION
Carangaria_A	ANCESTRAL SPECIES																	ENSGT00390000002732.c #22
Seriola	ANCESTRAL SPECIES																	ENSGT00390000002732.c #22
Yellowtail amberjack	MODERN SPECIES	1511																ENSSLDG00000001611 #22
Carangaria_A	ANCESTRAL SPECIES	28	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764.cb	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732.d #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
Barramundi perch	MODERN SPECIES	27	EZH1 (ENSLCAG00010007008)	ENSLCAG00010006991	PLEKHH3 (ENSLCAG00010006975)	tubg1 (ENSLCAG00010006970)	ENSLCAG00010006962	psmc3ip (ENSLCAG00010006958)	mlx (ENSLCAG00010006953)	FMNL1 (ENSLCAG00010006929)	SRCIN1 (ENSLCAG00010006913)	ENSLCAG00010006864	wnt9b (ENSLCAG00010006847)	gosr2 (ENSLCAG00010006842)	gpatch8 (ENSLCAG00010006839)	ENSLCAG00010006833	baxa (ENSLCAG00010006827)	rps11 (ENSLCAG00010006806) #22	lfng (ENSLCAG00010006795)	TTYH3 (ENSLCAG00010006791)	snx8a (ENSLCAG00010006788)	nudt1 (ENSLCAG00010006782)	MRM2 (ENSLCAG00010006779)	ELFN1 (ENSLCAG00010006775)	psmg3 (ENSLCAG00010006769)	tmem184a (ENSLCAG00010006761)	mafk (ENSLCAG00010006757)	INTS1 (ENSLCAG00010006748)	ENSLCAG00010006735	zgc:113279 (ENSLCAG00010006726)	ENSLCAG00010006717	ENSLCAG00010006714	zbtb44 (ENSLCAG00010006709)
Seriola	ANCESTRAL SPECIES	15	ENSGT00940000166174	ENSGT00940000156604	ENSGT00940000160264	ENSGT00940000164286.j.a.a.b	ENSGT00940000164286.j.a.b.b	ENSGT00940000156913.a	ENSGT00390000015009	ENSGT00390000003267	ENSGT00940000161812	ENSGT00940000163949.b	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732.d #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
Yellowtail amberjack	MODERN SPECIES	2918	ENSSLDG00000008822	EZH1 (ENSSLDG00000008875)	ramp2 (ENSSLDG00000008927)	ENSSLDG00000008948	ENSSLDG00000008960	ENSSLDG00000008970	ccdc43 (ENSSLDG00000008982)	ENSSLDG00000009010	fzd2 (ENSSLDG00000009048)	ENSSLDG00000009073	wnt9b (ENSSLDG00000009172)	gosr2 (ENSSLDG00000009194)	gpatch8 (ENSSLDG00000009225)	ENSSLDG00000009236	baxa (ENSSLDG00000009258)	rps11 (ENSSLDG00000009272) #22	lfng (ENSSLDG00000009390)	TTYH3 (ENSSLDG00000009427)	snx8a (ENSSLDG00000009467)	nudt1 (ENSSLDG00000009496)	MRM2 (ENSSLDG00000009513)	ELFN1 (ENSSLDG00000009529)	psmg3 (ENSSLDG00000009536)	tmem184a (ENSSLDG00000009552)	mafk (ENSSLDG00000009594)	INTS1 (ENSSLDG00000009656)	ENSSLDG00000009884	micall2a (ENSSLDG00000009915)	UNCX (ENSSLDG00000009939)	zfand2a (ENSSLDG00000009961)	galr2a (ENSSLDG00000009995)
Greater amberjack	MODERN SPECIES	17	ENSSDUG00000017753	EZH1 (ENSSDUG00000017787)	ramp2 (ENSSDUG00000017870)	ENSSDUG00000017887	ENSSDUG00000017896	ENSSDUG00000017905	ccdc43 (ENSSDUG00000017914)	ENSSDUG00000017934	fzd2 (ENSSDUG00000017955)	ENSSDUG00000017980	wnt9b (ENSSDUG00000018015)	gosr2 (ENSSDUG00000018035)	gpatch8 (ENSSDUG00000018065)	ENSSDUG00000018085	baxa (ENSSDUG00000018153)	rps11 (ENSSDUG00000018178) #22	lfng (ENSSDUG00000018217)	TTYH3 (ENSSDUG00000018241)	snx8a (ENSSDUG00000018288)	nudt1 (ENSSDUG00000018312)	MRM2 (ENSSDUG00000018319)	ELFN1 (ENSSDUG00000018326)	psmg3 (ENSSDUG00000018334)	tmem184a (ENSSDUG00000018367)	mafk (ENSSDUG00000018382)	INTS1 (ENSSDUG00000018402)	ENSSDUG00000018504	micall2a (ENSSDUG00000018540)	UNCX (ENSSDUG00000018575)	zfand2a (ENSSDUG00000018587)	ENSSDUG00000018604
Pleuronectoidei	ANCESTRAL SPECIES	2	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
Tongue sole	MODERN SPECIES	8	asb16 (ENSCSEG00000021489)	ENSCSEG00000021486	ENSCSEG00000021483	olfm2a (ENSCSEG00000021480)	ZNF385C (ENSCSEG00000021383)	dhx58 (ENSCSEG00000021382)	mlx (ENSCSEG00000021380)	FMNL1 (ENSCSEG00000021373)	SRCIN1 (ENSCSEG00000021366)	ENSCSEG00000021280	wnt9b (ENSCSEG00000021279)	gosr2 (ENSCSEG00000021278)	gpatch8 (ENSCSEG00000021277)	ENSCSEG00000021276	baxa (ENSCSEG00000021275)	rps11 (ENSCSEG00000021271) #22	lfng (ENSCSEG00000021270)	TTYH3 (ENSCSEG00000021269)	snx8a (ENSCSEG00000021266)	nudt1 (ENSCSEG00000021265)	MRM2 (ENSCSEG00000021245)	ELFN1 (ENSCSEG00000021244)	psmg3 (ENSCSEG00000021243)	tmem184a (ENSCSEG00000021242)	mafk (ENSCSEG00000021241)	INTS1 (ENSCSEG00000021240)	ENSCSEG00000021221	ENSCSEG00000021218	UNCX (ENSCSEG00000021217)	zfand2a (ENSCSEG00000021215)	axin1 (ENSCSEG00000021213)
Turbot	MODERN SPECIES	10	EZH1 (ENSSMAG00000006442)	ENSSMAG00000006378	PLEKHH3 (ENSSMAG00000006345)	tubg1 (ENSSMAG00000006308)	ENSSMAG00000006295	psmc3ip (ENSSMAG00000006279)	mlx (ENSSMAG00000006228)	ENSSMAG00000006213	ENSSMAG00000006144	ENSSMAG00000027450	wnt9b (ENSSMAG00000006115)	gosr2 (ENSSMAG00000033562)	gpatch8 (ENSSMAG00000029837)	ENSSMAG00000006007	baxa (ENSSMAG00000006054)	rps11 (ENSSMAG00000026047) #22	lfng (ENSSMAG00000005925)	ENSSMAG00000005834	snx8a (ENSSMAG00000005733)	nudt1 (ENSSMAG00000027765)	MRM2 (ENSSMAG00000005720)	ELFN1 (ENSSMAG00000005711)	psmg3 (ENSSMAG00000005699)	tmem184a (ENSSMAG00000005669)	mafk (ENSSMAG00000005660)	INTS1 (ENSSMAG00000005590)	ENSSMAG00000005577	micall2a (ENSSMAG00000005547)	ENSSMAG00000005540	zfand2a (ENSSMAG00000005518)	ENSSMAG00000005513
Eupercaria	ANCESTRAL SPECIES	3	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
Tetraodontidae	ANCESTRAL SPECIES	8	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000167841	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
Tetraodon	MODERN SPECIES	18	ENSTNIG00000011695	EZH1 (ENSTNIG00000011694)	ENSTNIG00000011693	PLEKHH3 (ENSTNIG00000011692)	tubg1 (ENSTNIG00000011691)	ENSTNIG00000011690	psmc3ip (ENSTNIG00000011689)	mlx (ENSTNIG00000011688)	FMNL1 (ENSTNIG00000011687)	SRCIN1 (ENSTNIG00000011686)	ENSTNIG00000011685	wnt9b (ENSTNIG00000011684)	gosr2 (ENSTNIG00000011683)	ENSTNIG00000011682	ENSTNIG00000011681	rps11 (ENSTNIG00000011680) #22	lfng (ENSTNIG00000003930)	TTYH3 (ENSTNIG00000005558)	snx8a (ENSTNIG00000005557)	nudt1 (ENSTNIG00000005556)	MRM2 (ENSTNIG00000005555)	ELFN1 (ENSTNIG00000007006)	psmg3 (ENSTNIG00000000227)	tmem184a (ENSTNIG00000004470)	mafk (ENSTNIG00000004471)	INTS1 (ENSTNIG00000018606)	micall2a (ENSTNIG00000018605)	UNCX (ENSTNIG00000018604)	zfand2a (ENSTNIG00000018603)	galr2a (ENSTNIG00000018602)	axin1 (ENSTNIG00000018601)
Fugu	MODERN SPECIES	17	EZH1 (ENSTRUG00000015011)	ENSTRUG00000014881	PLEKHH3 (ENSTRUG00000014831)	tubg1 (ENSTRUG00000014769)	ENSTRUG00000023156	psmc3ip (ENSTRUG00000031330)	mlx (ENSTRUG00000014631)	FMNL1 (ENSTRUG00000014461)	SRCIN1 (ENSTRUG00000014357)	ENSTRUG00000011190	wnt9b (ENSTRUG00000014284)	gosr2 (ENSTRUG00000014249)	gpatch8 (ENSTRUG00000020474)	ENSTRUG00000014209	baxa (ENSTRUG00000014208)	rps11 (ENSTRUG00000014172) #22	lfng (ENSTRUG00000014098)	TTYH3 (ENSTRUG00000013933)	snx8a (ENSTRUG00000013891)	nudt1 (ENSTRUG00000013868)	MRM2 (ENSTRUG00000027173)	ELFN1 (ENSTRUG00000013856)	psmg3 (ENSTRUG00000026675)	tmem184a (ENSTRUG00000019485)	mafk (ENSTRUG00000013716)	INTS1 (ENSTRUG00000013554)	ENSTRUG00000027816	ENSTRUG00000029216	UNCX (ENSTRUG00000013503)	zfand2a (ENSTRUG00000013429)	galr2a (ENSTRUG00000031971)
Eupecaria_A	ANCESTRAL SPECIES	5	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
Ballan wrasse	MODERN SPECIES	443	EZH1 (ENSLBEG00000022683)	ENSLBEG00000022809	PLEKHH3 (ENSLBEG00000022847)	tubg1 (ENSLBEG00000022896)	ENSLBEG00000022935	psmc3ip (ENSLBEG00000022959)	mlx (ENSLBEG00000022998)	FMNL1 (ENSLBEG00000023047)	SRCIN1 (ENSLBEG00000023169)	ENSLBEG00000023263	wnt9b (ENSLBEG00000023281)	gosr2 (ENSLBEG00000023313)	gpatch8 (ENSLBEG00000023352)	ENSLBEG00000023392	baxa (ENSLBEG00000023417)	rps11 (ENSLBEG00000023436) #22	lfng (ENSLBEG00000023495)	TTYH3 (ENSLBEG00000023547)
Eupecaria_B	ANCESTRAL SPECIES		ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
Eupecaria_C	ANCESTRAL SPECIES	25	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
Gilthead seabream	MODERN SPECIES	15	EZH1 (ENSSAUG00010022316)	ENSSAUG00010022460	PLEKHH3 (ENSSAUG00010023083)	tubg1 (ENSSAUG00010023085)	ENSSAUG00010023086	psmc3ip (ENSSAUG00010023088)	mlx (ENSSAUG00010023089)	FMNL1 (ENSSAUG00010023092)	SRCIN1 (ENSSAUG00010023527)	ENSSAUG00010023538	wnt9b (ENSSAUG00010023539)	gosr2 (ENSSAUG00010023540)	gpatch8 (ENSSAUG00010023544)	ENSSAUG00010023545	BAX (ENSSAUG00010023549)	rps11 (ENSSAUG00010023555) #22	lfng (ENSSAUG00010023567)	TTYH3 (ENSSAUG00010002824)	snx8a (ENSSAUG00010002888)	nudt1 (ENSSAUG00010002902)	MRM2 (ENSSAUG00010002909)	ELFN1 (ENSSAUG00010002910)	psmg3 (ENSSAUG00010002914)	tmem184a (ENSSAUG00010002940)	mafk (ENSSAUG00010003292)	INTS1 (ENSSAUG00010003323)	ENSSAUG00010003525	micall2a (ENSSAUG00010003528)	UNCX (ENSSAUG00010003537)	zfand2a (ENSSAUG00010003543)	GALR2 (ENSSAUG00010003547)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	23	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
European seabass	MODERN SPECIES	21	ramp2 (ENSDLAG00005020167)	EZH1 (ENSDLAG00005018927)	ENSDLAG00005017325	PLEKHH3 (ENSDLAG00005017232)	tubg1 (ENSDLAG00005017183)	ENSDLAG00005027835	mlx (ENSDLAG00005033890)	ENSDLAG00005016708	ENSDLAG00005016516	ENSDLAG00005016424	wnt9b (ENSDLAG00005016400)	gosr2 (ENSDLAG00005032162)	gpatch8 (ENSDLAG00005016354)	ENSDLAG00005016332	baxa (ENSDLAG00005016285)	rps11 (ENSDLAG00005016216) #22	lfng (ENSDLAG00005016089)	ENSDLAG00005016061	snx8a (ENSDLAG00005015992)	nudt1 (ENSDLAG00005015983)	MRM2 (ENSDLAG00005015981)	ELFN1 (ENSDLAG00005028900)	psmg3 (ENSDLAG00005015972)	mafk (ENSDLAG00005033598)	tmem184a (ENSDLAG00005026985)	INTS1 (ENSDLAG00005015472)	ENSDLAG00005015430	micall2a (ENSDLAG00005015419)	UNCX (ENSDLAG00005015415)	zfand2a (ENSDLAG00005015409)	ENSDLAG00005015402
Large yellow croaker	MODERN SPECIES	483	ramp2 (ENSLCRG00005001951)	EZH1 (ENSLCRG00005002022)	ENSLCRG00005003928	PLEKHH3 (ENSLCRG00005003933)	tubg1 (ENSLCRG00005003934)	ENSLCRG00005003937	psmc3ip (ENSLCRG00005003940)	mlx (ENSLCRG00005003949)	FMNL1 (ENSLCRG00005004002)	SRCIN1 (ENSLCRG00005004826)	ENSLCRG00005004843	wnt9b (ENSLCRG00005004844)	ENSLCRG00005004845	gpatch8 (ENSLCRG00005004846)	ENSLCRG00005004850	rps11 (ENSLCRG00005004858) #22	baxa (ENSLCRG00005004884)	lfng (ENSLCRG00005004901)	TTYH3 (ENSLCRG00005004931)	snx8a (ENSLCRG00005004936)	nudt1 (ENSLCRG00005005005)	MRM2 (ENSLCRG00005005006)	ELFN1 (ENSLCRG00005005007)	psmg3 (ENSLCRG00005005011)	tmem184a (ENSLCRG00005005018)	mafk (ENSLCRG00005005129)	INTS1 (ENSLCRG00005005136)	ENSLCRG00005005157	micall2a (ENSLCRG00005005158)	UNCX (ENSLCRG00005005159)	zfand2a (ENSLCRG00005005160)
Perciformes	ANCESTRAL SPECIES	1	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
Cottioidei	ANCESTRAL SPECIES	1	ENSGT00390000001979	ENSGT00940000153340.A	ENSGT00940000155335.s.b	ENSGT00930000151032.A.c.b	ENSGT00950000182906.a.a.a	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000176374	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
Stickleback	MODERN SPECIES	10	gfer (ENSGACG00000014261)	drg2 (ENSGACG00000014254)	MYO15A (ENSGACG00000014239)	LLGL1 (ENSGACG00000014233)	psmc3ip (ENSGACG00000014224)	mlx (ENSGACG00000014221)	FMNL1 (ENSGACG00000014208)	SRCIN1 (ENSGACG00000014202)	ENSGACG00000014195	wnt9b (ENSGACG00000014190)	gosr2 (ENSGACG00000014177)	gpatch8 (ENSGACG00000014175)	ENSGACG00000014171	ENSGACG00000014169	baxa (ENSGACG00000014161)	rps11 (ENSGACG00000014154) #22	lfng (ENSGACG00000014145)	TTYH3 (ENSGACG00000014138)	snx8a (ENSGACG00000014134)	nudt1 (ENSGACG00000014129)	MRM2 (ENSGACG00000014126)	psmg3 (ENSGACG00000014123)	tmem184a (ENSGACG00000014105)	mafk (ENSGACG00000014101)	INTS1 (ENSGACG00000014088)	ENSGACG00000014085	ENSGACG00000014082	ENSGACG00000014079	zfand2a (ENSGACG00000014057)	galr2a (ENSGACG00000014055)	axin1 (ENSGACG00000014047)
Lumpfish	DUPLICATION
Lumpfish	MODERN SPECIES	23	syngr3a (ENSCLMG00005008979)	gfer (ENSCLMG00005008986)	drg2 (ENSCLMG00005008998)	ENSCLMG00005009005	LLGL1 (ENSCLMG00005009009)	psmc3ip (ENSCLMG00005009014)	mlx (ENSCLMG00005009015)	FMNL1 (ENSCLMG00005009029)	SRCIN1 (ENSCLMG00005012183)	ENSCLMG00005012184	wnt9b (ENSCLMG00005012185)	gosr2 (ENSCLMG00005012186)	gpatch8 (ENSCLMG00005012187)	ENSCLMG00005012188	baxa (ENSCLMG00005012189)	rps11 (ENSCLMG00005012190) #22	RPS11 (ENSCLMG00005012195) #22	RPS11 (ENSCLMG00005012200) #22	TTYH3 (ENSCLMG00005012217)	lfng (ENSCLMG00005012233)	snx8a (ENSCLMG00005012236)	nudt1 (ENSCLMG00005012582)	MRM2 (ENSCLMG00005012584)	ELFN1 (ENSCLMG00005012586)	psmg3 (ENSCLMG00005012587)	tmem184a (ENSCLMG00005012592)	mafk (ENSCLMG00005002981)	INTS1 (ENSCLMG00005003035)	ENSCLMG00005003724	ENSCLMG00005003725	UNCX (ENSCLMG00005003726)
Lumpfish	DUPLICATION
Lumpfish	MODERN SPECIES	23	drg2 (ENSCLMG00005008998)	ENSCLMG00005009005	LLGL1 (ENSCLMG00005009009)	psmc3ip (ENSCLMG00005009014)	mlx (ENSCLMG00005009015)	FMNL1 (ENSCLMG00005009029)	SRCIN1 (ENSCLMG00005012183)	ENSCLMG00005012184	wnt9b (ENSCLMG00005012185)	gosr2 (ENSCLMG00005012186)	gpatch8 (ENSCLMG00005012187)	ENSCLMG00005012188	baxa (ENSCLMG00005012189)	rps11 (ENSCLMG00005012190) #22	RPS11 (ENSCLMG00005012195) #22	RPS11 (ENSCLMG00005012200) #22	TTYH3 (ENSCLMG00005012217)	lfng (ENSCLMG00005012233)	snx8a (ENSCLMG00005012236)	nudt1 (ENSCLMG00005012582)	MRM2 (ENSCLMG00005012584)	ELFN1 (ENSCLMG00005012586)	psmg3 (ENSCLMG00005012587)	tmem184a (ENSCLMG00005012592)	mafk (ENSCLMG00005002981)	INTS1 (ENSCLMG00005003035)	ENSCLMG00005003724	ENSCLMG00005003725	UNCX (ENSCLMG00005003726)	zfand2a (ENSCLMG00005003727)	galr2a (ENSCLMG00005003728)
Lumpfish	MODERN SPECIES	23	gfer (ENSCLMG00005008986)	drg2 (ENSCLMG00005008998)	ENSCLMG00005009005	LLGL1 (ENSCLMG00005009009)	psmc3ip (ENSCLMG00005009014)	mlx (ENSCLMG00005009015)	FMNL1 (ENSCLMG00005009029)	SRCIN1 (ENSCLMG00005012183)	ENSCLMG00005012184	wnt9b (ENSCLMG00005012185)	gosr2 (ENSCLMG00005012186)	gpatch8 (ENSCLMG00005012187)	ENSCLMG00005012188	baxa (ENSCLMG00005012189)	rps11 (ENSCLMG00005012190) #22	RPS11 (ENSCLMG00005012195) #22	RPS11 (ENSCLMG00005012200) #22	TTYH3 (ENSCLMG00005012217)	lfng (ENSCLMG00005012233)	snx8a (ENSCLMG00005012236)	nudt1 (ENSCLMG00005012582)	MRM2 (ENSCLMG00005012584)	ELFN1 (ENSCLMG00005012586)	psmg3 (ENSCLMG00005012587)	tmem184a (ENSCLMG00005012592)	mafk (ENSCLMG00005002981)	INTS1 (ENSCLMG00005003035)	ENSCLMG00005003724	ENSCLMG00005003725	UNCX (ENSCLMG00005003726)	zfand2a (ENSCLMG00005003727)
Perciformes_a	ANCESTRAL SPECIES	1	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
Pike perch	MODERN SPECIES	27	ENSSLUG00000012280	PLEKHH3 (ENSSLUG00000012321)	tubg1 (ENSSLUG00000012347)	ENSSLUG00000012408	psmc3ip (ENSSLUG00000012417)	mlx (ENSSLUG00000012424)	FMNL1 (ENSSLUG00000012466)	SRCIN1 (ENSSLUG00000012516)	ENSSLUG00000012525	wnt9b (ENSSLUG00000012530)	gosr2 (ENSSLUG00000012536)	gpatch8 (ENSSLUG00000012545)	PTS (ENSSLUG00000012556)	ENSSLUG00000012562	baxa (ENSSLUG00000012573)	rps11 (ENSSLUG00000012583) #22	lfng (ENSSLUG00000012610)	TTYH3 (ENSSLUG00000012629)	snx8a (ENSSLUG00000012673)	nudt1 (ENSSLUG00000012926)	MRM2 (ENSSLUG00000012931)	ELFN1 (ENSSLUG00000012934)	psmg3 (ENSSLUG00000012940)	tmem184a (ENSSLUG00000012969)	mafk (ENSSLUG00000013200)	INTS1 (ENSSLUG00000013277)	ENSSLUG00000016067	micall2a (ENSSLUG00000016076)	UNCX (ENSSLUG00000016081)	zfand2a (ENSSLUG00000016098)	GALR2 (ENSSLUG00000016112)
Channel bull blenny	MODERN SPECIES	22	EZH1 (ENSCGOG00000005311)	ENSCGOG00000003475	PLEKHH3 (ENSCGOG00000003436)	tubg1 (ENSCGOG00000003049)	ENSCGOG00000003021	psmc3ip (ENSCGOG00000002989)	mlx (ENSCGOG00000002907)	FMNL1 (ENSCGOG00000002543)	SRCIN1 (ENSCGOG00000002515)	ENSCGOG00000002485	wnt9b (ENSCGOG00000002483)	gosr2 (ENSCGOG00000002482)	gpatch8 (ENSCGOG00000002479)	ENSCGOG00000002470	baxa (ENSCGOG00000002469)	rps11 (ENSCGOG00000002458) #22	lfng (ENSCGOG00000002323)	TTYH3 (ENSCGOG00000002145)	snx8a (ENSCGOG00000001981)	MRM2 (ENSCGOG00000001971)	nudt1 (ENSCGOG00000001958)	ELFN1 (ENSCGOG00000001954)	psmg3 (ENSCGOG00000001951)	tmem184a (ENSCGOG00000001915)	mafk (ENSCGOG00000001911)	ENSCGOG00000001576	micall2a (ENSCGOG00000001572)	zfand2a (ENSCGOG00000001569)	UNCX (ENSCGOG00000001565)	galr2a (ENSCGOG00000001563)	ENSCGOG00000001560
Ovalentaria	ANCESTRAL SPECIES	1	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
Atherinomorphae	ANCESTRAL SPECIES	6	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
Oryzias	ANCESTRAL SPECIES		ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000158717.ab	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
Oryzias_b	ANCESTRAL SPECIES	11	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000176374	ENSGT01090000260003.a.b.b.b	ENSGT00940000156497.a	ENSGT00390000002732 #22	ENSGT00940000158717.ab	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
Indian medaka	MODERN SPECIES	9	ezh1 (ENSOMEG00000023626)	ENSOMEG00000023639	PLEKHH3 (ENSOMEG00000023657)	tubg1 (ENSOMEG00000023666)	ENSOMEG00000023682	psmc3ip (ENSOMEG00000023689)	mlx (ENSOMEG00000023702)	FMNL1 (ENSOMEG00000023728)	SRCIN1 (ENSOMEG00000023767)	ENSOMEG00000023784	wnt9b (ENSOMEG00000023787)	gosr2 (ENSOMEG00000023797)	gpatch8 (ENSOMEG00000023809)	baxa (ENSOMEG00000024020)	ENSOMEG00000024019	rps11 (ENSOMEG00000024015) #22	lfng (ENSOMEG00000024014)	TTYH3 (ENSOMEG00000024013)	snx8a (ENSOMEG00000024012)	nudt1 (ENSOMEG00000024011)	MRM2 (ENSOMEG00000024010)	ELFN1 (ENSOMEG00000024009)	psmg3 (ENSOMEG00000024008)	tmem184a (ENSOMEG00000024007)	mafk (ENSOMEG00000024006)	INTS1 (ENSOMEG00000024005)	ENSOMEG00000024004	ENSOMEG00000024003	UNCX (ENSOMEG00000024002)	zfand2a (ENSOMEG00000024001)	galr2a (ENSOMEG00000024000)
Javanese ricefish	MODERN SPECIES	22	EZH1 (ENSOJAG00000012865)	ENSOJAG00000012342	PLEKHH3 (ENSOJAG00000012277)	tubg1 (ENSOJAG00000012167)	ENSOJAG00000012151	psmc3ip (ENSOJAG00000012142)	mlx (ENSOJAG00000012129)	FMNL1 (ENSOJAG00000011509)	SRCIN1 (ENSOJAG00000011444)	arf1 (ENSOJAG00000011423)	wnt9b (ENSOJAG00000011405)	gosr2 (ENSOJAG00000011371)	gpatch8 (ENSOJAG00000011306)	ENSOJAG00000011110	baxa (ENSOJAG00000011083)	rps11 (ENSOJAG00000010972) #22	lfng (ENSOJAG00000010885)	TTYH3 (ENSOJAG00000010855)	snx8a (ENSOJAG00000010432)	nudt1 (ENSOJAG00000010402)	MRM2 (ENSOJAG00000010358)	ELFN1 (ENSOJAG00000010336)	psmg3 (ENSOJAG00000010329)	tmem184a (ENSOJAG00000010186)	mafk (ENSOJAG00000010171)	ENSOJAG00000009831	ENSOJAG00000009813	UNCX (ENSOJAG00000009808)	zfand2a (ENSOJAG00000009778)	galr2a (ENSOJAG00000009761)	axin1 (ENSOJAG00000009726)
Oryzias_a	ANCESTRAL SPECIES	10	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000158717.ab	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000167841	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
Japanese Medaka HdrR	MODERN SPECIES	22	ezh1 (ENSORLG00000004289)	ENSORLG00000004387	PLEKHH3 (ENSORLG00000004406)	tubg1 (ENSORLG00000004426)	ENSORLG00000004441	psmc3ip (ENSORLG00000004465)	mlx (ENSORLG00000024262)	ENSORLG00000004491	SRCIN1 (ENSORLG00000004514)	ENSORLG00000023270	wnt9b (ENSORLG00000004531)	gpatch8 (ENSORLG00000028497)	gosr2 (ENSORLG00000004536)	ENSORLG00000004565	baxa (ENSORLG00000004568)	rps11 (ENSORLG00000004578) #22	lfng (ENSORLG00000004596)	TTYH3 (ENSORLG00000004621)	snx8a (ENSORLG00000004632)	nudt1 (ENSORLG00000026743)	MRM2 (ENSORLG00000029537)	ELFN1 (ENSORLG00000004648)	psmg3 (ENSORLG00000004653)	tmem184a (ENSORLG00000004676)	mafk (ENSORLG00000004687)	ints1 (ENSORLG00000004733)	ENSORLG00000004744	ENSORLG00000004746	UNCX (ENSORLG00000004749)	zfand2a (ENSORLG00000004768)	galr2a (ENSORLG00000026769)
Chinese medaka	MODERN SPECIES	196	ENSOSIG00000005268	EZH1 (ENSOSIG00000005277)	ENSOSIG00000006165	PLEKHH3 (ENSOSIG00000006183)	tubg1 (ENSOSIG00000006186)	ENSOSIG00000006202	psmc3ip (ENSOSIG00000006203)	mlx (ENSOSIG00000006214)	FMNL1 (ENSOSIG00000006215)	SRCIN1 (ENSOSIG00000006249)	wnt9b (ENSOSIG00000006253)	gosr2 (ENSOSIG00000006254)	gpatch8 (ENSOSIG00000006255)	ENSOSIG00000006256	baxa (ENSOSIG00000006259)	rps11 (ENSOSIG00000006260) #22	lfng (ENSOSIG00000006273)	TTYH3 (ENSOSIG00000006293)	snx8a (ENSOSIG00000006297)	nudt1 (ENSOSIG00000006314)	MRM2 (ENSOSIG00000006317)	ELFN1 (ENSOSIG00000006320)	psmg3 (ENSOSIG00000006321)	tmem184a (ENSOSIG00000006325)	mafk (ENSOSIG00000006334)	INTS1 (ENSOSIG00000006339)	ENSOSIG00000006346	micall2a (ENSOSIG00000006350)	UNCX (ENSOSIG00000006351)	zfand2a (ENSOSIG00000006353)	galr2a (ENSOSIG00000006354)
Cyprinodontiformes	ANCESTRAL SPECIES	3	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
Cyprinodontoidei	ANCESTRAL SPECIES	18	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
Poeciliinae	ANCESTRAL SPECIES	1	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
Poecilia	ANCESTRAL SPECIES	8	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377.i.a	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
NAME_6	ANCESTRAL SPECIES	8	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377.i.a	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
Sailfin molly	MODERN SPECIES	1167															ENSPLAG00000012517	rps11 (ENSPLAG00000012541) #22	lfng (ENSPLAG00000012564)	TTYH3 (ENSPLAG00000012621)	snx8a (ENSPLAG00000012649)	nudt1 (ENSPLAG00000012664)	MRM2 (ENSPLAG00000012672)	ELFN1 (ENSPLAG00000012686)	psmg3 (ENSPLAG00000012695)	tmem184a (ENSPLAG00000012735)	mafk (ENSPLAG00000012752)	INTS1 (ENSPLAG00000012872)	ENSPLAG00000012895	ENSPLAG00000012906
Amazon molly	MODERN SPECIES	345	ENSPFOG00000014168	psmc3ip (ENSPFOG00000014320)	mlx (ENSPFOG00000014236)	FMNL1 (ENSPFOG00000014249)	SRCIN1 (ENSPFOG00000014282)	ENSPFOG00000024030	mlx (ENSPFOG00000014364)	ENSPFOG00000014677	ENSPFOG00000014787	wnt9b (ENSPFOG00000014801)	gosr2 (ENSPFOG00000014829)	gpatch8 (ENSPFOG00000014833)	ENSPFOG00000014877	baxa (ENSPFOG00000014901)	baxa (ENSPFOG00000024677)	rps11 (ENSPFOG00000014915) #22	lfng (ENSPFOG00000014935)	TTYH3 (ENSPFOG00000015015)	snx8a (ENSPFOG00000015107)	nudt1 (ENSPFOG00000015165)	MRM2 (ENSPFOG00000015171)
Guppy	MODERN SPECIES	180															ENSPREG00000014665	rps11 (ENSPREG00000014643) #22
Platyfish	MODERN SPECIES	7	ENSXMAG00000009149	PLEKHH3 (ENSXMAG00000013854)	tubg1 (ENSXMAG00000013850)	ENSXMAG00000025155	mlx (ENSXMAG00000024087)	psmc3ip (ENSXMAG00000029842)	FMNL1 (ENSXMAG00000013824)	SRCIN1 (ENSXMAG00000027466)	ENSXMAG00000009193	wnt9b (ENSXMAG00000009198)	gosr2 (ENSXMAG00000009206)	gpatch8 (ENSXMAG00000009217)	ENSXMAG00000009223	baxa (ENSXMAG00000009233)	baxa (ENSXMAG00000009239)	rps11 (ENSXMAG00000009240) #22	lfng (ENSXMAG00000029121)	TTYH3 (ENSXMAG00000009276)	snx8a (ENSXMAG00000009300)	nudt1 (ENSXMAG00000009311)	MRM2 (ENSXMAG00000009314)	ELFN1 (ENSXMAG00000019743)	psmg3 (ENSXMAG00000009328)	tmem184a (ENSXMAG00000009315)	mafk (ENSXMAG00000009331)	INTS1 (ENSXMAG00000009336)	ENSXMAG00000023396	UNCX (ENSXMAG00000029018)	zfand2a (ENSXMAG00000022259)	ENSXMAG00000009379	axin1 (ENSXMAG00000009380)
NAME_4	ANCESTRAL SPECIES	3	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
Sheepshead minnow	MODERN SPECIES	220										ENSCVAG00000013374	wnt9b (ENSCVAG00000013396)	gosr2 (ENSCVAG00000013453)	gpatch8 (ENSCVAG00000013477)	ENSCVAG00000013490	baxa (ENSCVAG00000000918)	rps11 (ENSCVAG00000013528) #22	lfng (ENSCVAG00000013557)	ENSCVAG00000013584	snx8a (ENSCVAG00000013642)	nudt1 (ENSCVAG00000013662)	MRM2 (ENSCVAG00000013677)	ELFN1 (ENSCVAG00000013681)	TMTC2 (ENSCVAG00000013712)	CRACR2A (ENSCVAG00000013782)	PRMT8 (ENSCVAG00000013818)	TSPAN9 (ENSCVAG00000013840)	tspan33b (ENSCVAG00000000349)	ttc38 (ENSCVAG00000013905)	mical3a (ENSCVAG00000014017)	ENSCVAG00000014205	hipk2 (ENSCVAG00000014320)
Aplocheiloidei	ANCESTRAL SPECIES	7	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
Mangrove rivulus	DUPLICATION
Mangrove rivulus	MODERN SPECIES	198		PLEKHH3 (ENSKMAG00000017951)	tubg1 (ENSKMAG00000017992)	ENSKMAG00000018023	psmc3ip (ENSKMAG00000018064)	mlx (ENSKMAG00000018044)	FMNL1 (ENSKMAG00000018106)	SRCIN1 (ENSKMAG00000018185)	ENSKMAG00000018315	wnt9b (ENSKMAG00000018327)	gosr2 (ENSKMAG00000018341)	gpatch8 (ENSKMAG00000018364)	ENSKMAG00000018399	baxa (ENSKMAG00000018423)	baxa (ENSKMAG00000018443)	RPS11 (ENSKMAG00000018535) #22	lfng (ENSKMAG00000018600)	TTYH3 (ENSKMAG00000018654)	snx8a (ENSKMAG00000018745)	nudt1 (ENSKMAG00000018781)	MRM2 (ENSKMAG00000018800)	ELFN1 (ENSKMAG00000018811)	psmg3 (ENSKMAG00000018823)	tmem184a (ENSKMAG00000018835)	mafk (ENSKMAG00000018861)	INTS1 (ENSKMAG00000018883)	ENSKMAG00000018987	micall2a (ENSKMAG00000018998)	UNCX (ENSKMAG00000019024)	zfand2a (ENSKMAG00000000171)
Mangrove rivulus	MODERN SPECIES	260				EML4 (ENSKMAG00000018281)	ENSKMAG00000018194	dnaaf10 (ENSKMAG00000018178)	pno1 (ENSKMAG00000018156)	ppp3r1a (ENSKMAG00000018138)	cnrip1b (ENSKMAG00000018126)	ENSKMAG00000018102	chrna1 (ENSKMAG00000018050)	ENSKMAG00000018030	npr3 (ENSKMAG00000018012)	ENSKMAG00000017989	ENSKMAG00000017973	ENSKMAG00000017959 #22	ENSKMAG00000017953	tncb (ENSKMAG00000017902)	ENSKMAG00000017874
Turquoise killifish	MODERN SPECIES	1614	PLEKHH3 (ENSNFUG00015003277)	tubg1 (ENSNFUG00015003299)	FAM134C (ENSNFUG00015003324)	mlx (ENSNFUG00015003335)	FMNL1 (ENSNFUG00015003370)	SRCIN1 (ENSNFUG00015003614)	ENSNFUG00015003644	ENSNFUG00015003646	ENSNFUG00015003650	wnt9b (ENSNFUG00015003655)	gosr2 (ENSNFUG00015003660)	gpatch8 (ENSNFUG00015003665)	Nfu_g_1_007680 (ENSNFUG00015003671)	BAX (ENSNFUG00015003674)	baxa (ENSNFUG00015003676)	rps11 (ENSNFUG00015003681) #22	AKT1S1 (ENSNFUG00015003687)	Nfu_g_1_007666 (ENSNFUG00015003688)	emc10 (ENSNFUG00015003690)	mybpc2a (ENSNFUG00015003859)	LRRC4BA (ENSNFUG00015005031)	med25 (ENSNFUG00015005056)	SYT3 (ENSNFUG00015005131)	Nfu_g_1_007590 (ENSNFUG00015000091)	SHANK1 (ENSNFUG00015000118)	SUV420H2 (ENSNFUG00015000147)	ppp1caa (ENSNFUG00015000249)	cldni (ENSNFUG00015000371)	CORO1A (ENSNFUG00015000425)	BX649554.3 (ENSNFUG00015000480)	ENSNFUG00015000504
Ovalentaria_B	ANCESTRAL SPECIES		ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a	ENSGT00940000156947.j
Pomacentridae	ANCESTRAL SPECIES	24	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648.h
Pomacentridae_A	ANCESTRAL SPECIES	15	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648.h
Amphiprion	ANCESTRAL SPECIES	9	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000176374	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648.h
Clown anemonefish	MODERN SPECIES	2073						psmc3ip (ENSAOCG00000017779)	mlx (ENSAOCG00000017798)	FMNL1 (ENSAOCG00000017898)	SRCIN1 (ENSAOCG00000017983)	ENSAOCG00000001275	wnt9b (ENSAOCG00000018047)	gosr2 (ENSAOCG00000018081)	gpatch8 (ENSAOCG00000018102)	ENSAOCG00000018124	baxa (ENSAOCG00000018152)	rps11 (ENSAOCG00000001295) #22	lfng (ENSAOCG00000018223)
Orange clownfish	MODERN SPECIES	5	ENSAPEG00000017428	PLEKHH3 (ENSAPEG00000017395)	tubg1 (ENSAPEG00000017313)	ENSAPEG00000017292	psmc3ip (ENSAPEG00000017277)	psmc3ip (ENSAPEG00000017244)	mlx (ENSAPEG00000017197)	FMNL1 (ENSAPEG00000017100)	SRCIN1 (ENSAPEG00000016944)	ENSAPEG00000016909	wnt9b (ENSAPEG00000016888)	gosr2 (ENSAPEG00000016849)	gpatch8 (ENSAPEG00000016776)	ENSAPEG00000016738	baxa (ENSAPEG00000016711)	rps11 (ENSAPEG00000016683) #22	lfng (ENSAPEG00000016654)	ENSAPEG00000016634	TTYH3 (ENSAPEG00000016569)	snx8a (ENSAPEG00000016519)	nudt1 (ENSAPEG00000016498)	MRM2 (ENSAPEG00000016487)	ELFN1 (ENSAPEG00000016455)	psmg3 (ENSAPEG00000016446)	tmem184a (ENSAPEG00000016412)	mafk (ENSAPEG00000016402)	INTS1 (ENSAPEG00000016218)	ENSAPEG00000016195	micall2a (ENSAPEG00000016181)	UNCX (ENSAPEG00000016145)	zfand2a (ENSAPEG00000016112)
Spiny chromis	MODERN SPECIES	591								FMNL1 (ENSAPOG00000023580)	SRCIN1 (ENSAPOG00000023772)	ENSAPOG00000023828	wnt9b (ENSAPOG00000023850)	gosr2 (ENSAPOG00000023889)	gpatch8 (ENSAPOG00000023938)	ENSAPOG00000023977	baxa (ENSAPOG00000023988)	rps11 (ENSAPOG00000001274) #22	lfng (ENSAPOG00000001280)	TTYH3 (ENSAPOG00000001304)	snx8a (ENSAPOG00000001321)	nudt1 (ENSAPOG00000001329)	MRM2 (ENSAPOG00000001337)
Bicolor damselfish	MODERN SPECIES	2328					ENSSPAG00000011700	psmc3ip (ENSSPAG00000011679)	mlx (ENSSPAG00000011644)	FMNL1 (ENSSPAG00000011526)	SRCIN1 (ENSSPAG00000011455)	ENSSPAG00000011431	wnt9b (ENSSPAG00000011412)	gosr2 (ENSSPAG00000011391)	gpatch8 (ENSSPAG00000011368)	ENSSPAG00000011338	baxa (ENSSPAG00000011324)	rps11 (ENSSPAG00000011275) #22
Cichlidae	ANCESTRAL SPECIES	16	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
Midas cichlid	MODERN SPECIES	550	EZH1 (ENSACIG00000011678)	ENSACIG00000011727	PLEKHH3 (ENSACIG00000011790)	tubg1 (ENSACIG00000011818)	ENSACIG00000011850	psmc3ip (ENSACIG00000011871)	mlx (ENSACIG00000011977)	FMNL1 (ENSACIG00000011998)	SRCIN1 (ENSACIG00000012062)	ENSACIG00000012192	wnt9b (ENSACIG00000012203)	gosr2 (ENSACIG00000012222)	gpatch8 (ENSACIG00000012241)	ENSACIG00000012265	baxa (ENSACIG00000012300)	rps11 (ENSACIG00000012316) #22	lfng (ENSACIG00000012363)	TTYH3 (ENSACIG00000012396)	snx8a (ENSACIG00000012430)	nudt1 (ENSACIG00000012455)	MRM2 (ENSACIG00000012468)
Pseudocrenilabrinae	ANCESTRAL SPECIES	1	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b.i.b	ENSGT00390000002732 #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	12	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b.i.b	ENSGT00390000002732 #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
Lyretail cichlid	MODERN SPECIES	345	ENSNBRG00000016880	PLEKHH3 (ENSNBRG00000016844)	tubg1 (ENSNBRG00000016806)	ENSNBRG00000016785	ENSNBRG00000016743	psmc3ip (ENSNBRG00000016651)	mlx (ENSNBRG00000016610)	FMNL1 (ENSNBRG00000016522)	ENSNBRG00000016483	ENSNBRG00000016455	wnt9b (ENSNBRG00000016437)	gosr2 (ENSNBRG00000016415)	gpatch8 (ENSNBRG00000016402)	ENSNBRG00000016359	baxa (ENSNBRG00000016344)	rps11 (ENSNBRG00000016251) #22	lfng (ENSNBRG00000016102)	TTYH3 (ENSNBRG00000016056)	snx8a (ENSNBRG00000016027)	nudt1 (ENSNBRG00000016007)	MRM2 (ENSNBRG00000015997)	ELFN1 (ENSNBRG00000015987)	psmg3 (ENSNBRG00000015979)	tmem184a (ENSNBRG00000015959)	mafk (ENSNBRG00000015945)	INTS1 (ENSNBRG00000015846)	ENSNBRG00000015822	ENSNBRG00000015810	UNCX (ENSNBRG00000015795)	zfand2a (ENSNBRG00000015772)	GALR2 (ENSNBRG00000015763)
Haplochromini	ANCESTRAL SPECIES	12	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b.i.b	ENSGT00390000002732 #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
Burton s mouthbrooder	MODERN SPECIES	305	EZH1 (ENSHBUG00000002355)	ENSHBUG00000002379	PLEKHH3 (ENSHBUG00000002399)	tubg1 (ENSHBUG00000002429)	ENSHBUG00000002437	psmc3ip (ENSHBUG00000002517)	mlx (ENSHBUG00000002539)	FMNL1 (ENSHBUG00000002557)	SRCIN1 (ENSHBUG00000002616)	ENSHBUG00000002636	wnt9b (ENSHBUG00000002643)	gosr2 (ENSHBUG00000002654)	gpatch8 (ENSHBUG00000002669)	baxa (ENSHBUG00000002717)	ENSHBUG00000000056	rps11 (ENSHBUG00000000926) #22	lfng (ENSHBUG00000002754)	TTYH3 (ENSHBUG00000002810)	snx8a (ENSHBUG00000002838)	nudt1 (ENSHBUG00000002865)	MRM2 (ENSHBUG00000002875)	ELFN1 (ENSHBUG00000002887)	psmg3 (ENSHBUG00000002904)	tmem184a (ENSHBUG00000002933)	mafk (ENSHBUG00000002939)	INTS1 (ENSHBUG00000003040)	ENSHBUG00000003052	ENSHBUG00000003060	UNCX (ENSHBUG00000003066)	zfand2a (ENSHBUG00000003074)	GALR2 (ENSHBUG00000003093)
Haplochromini_A	ANCESTRAL SPECIES	14	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b.i.b	ENSGT00390000002732 #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
P. nyererei	MODERN SPECIES	313	EZH1 (ENSPNYG00000009910)	ENSPNYG00000009849	PLEKHH3 (ENSPNYG00000009813)	tubg1 (ENSPNYG00000009778)	ENSPNYG00000009760	psmc3ip (ENSPNYG00000009624)	mlx (ENSPNYG00000009585)	FMNL1 (ENSPNYG00000009539)	SRCIN1 (ENSPNYG00000009491)	ENSPNYG00000009472	wnt9b (ENSPNYG00000009459)	gosr2 (ENSPNYG00000009438)	gpatch8 (ENSPNYG00000009426)	ENSPNYG00000009384	baxa (ENSPNYG00000009354)	rps11 (ENSPNYG00000009309) #22	lfng (ENSPNYG00000009279)	TTYH3 (ENSPNYG00000009232)	snx8a (ENSPNYG00000009201)	nudt1 (ENSPNYG00000009181)	MRM2 (ENSPNYG00000009165)	ELFN1 (ENSPNYG00000009157)	psmg3 (ENSPNYG00000009148)	tmem184a (ENSPNYG00000009124)	mafk (ENSPNYG00000009112)	INTS1 (ENSPNYG00000008990)	ENSPNYG00000008955	ENSPNYG00000008940	UNCX (ENSPNYG00000008924)	zfand2a (ENSPNYG00000008868)	GALR2 (ENSPNYG00000008837)
Haplochromini_B	ANCESTRAL SPECIES	21	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00940000165468	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b.i.b	ENSGT00390000002732 #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
Zebra mbuna	MODERN SPECIES	1107	PLEKHH3 (ENSMZEG00005022636)	tubg1 (ENSMZEG00005022631)	ENSMZEG00005022625	psmc3ip (ENSMZEG00005022623)	mlx (ENSMZEG00005022622)	FMNL1 (ENSMZEG00005022615)	SRCIN1 (ENSMZEG00005022605)	ENSMZEG00005022601	ENSMZEG00005022594	wnt9b (ENSMZEG00005022593)	gosr2 (ENSMZEG00005022590)	ENSMZEG00005022588	gpatch8 (ENSMZEG00005022584)	ENSMZEG00005022581	baxa (ENSMZEG00005022578)	rps11 (ENSMZEG00005022572) #22	lfng (ENSMZEG00005022569)	TTYH3 (ENSMZEG00005022561)	snx8a (ENSMZEG00005022554)	nudt1 (ENSMZEG00005022553)	MRM2 (ENSMZEG00005022549)	ELFN1 (ENSMZEG00005022546)	psmg3 (ENSMZEG00005022545)	tmem184a (ENSMZEG00005022540)	mafk (ENSMZEG00005022535)	INTS1 (ENSMZEG00005022523)	ENSMZEG00005022517	micall2a (ENSMZEG00005022513)	UNCX (ENSMZEG00005022512)	zfand2a (ENSMZEG00005022510)	GALR2 (ENSMZEG00005022509)
Eastern happy	MODERN SPECIES	16	ENSACLG00000003705	PLEKHH3 (ENSACLG00000003736)	tubg1 (ENSACLG00000003767)	ENSACLG00000003819	psmc3ip (ENSACLG00000003845)	mlx (ENSACLG00000003850)	FMNL1 (ENSACLG00000003867)	SRCIN1 (ENSACLG00000003956)	ENSACLG00000004116	ENSACLG00000004123	wnt9b (ENSACLG00000004132)	gosr2 (ENSACLG00000004143)	gpatch8 (ENSACLG00000004165)	ENSACLG00000004193	baxa (ENSACLG00000004261)	rps11 (ENSACLG00000004309) #22	lfng (ENSACLG00000004456)	TTYH3 (ENSACLG00000004509)	snx8a (ENSACLG00000004634)	nudt1 (ENSACLG00000004671)	MRM2 (ENSACLG00000004683)	ELFN1 (ENSACLG00000004694)	psmg3 (ENSACLG00000004960)	tmem184a (ENSACLG00000004966)	mafk (ENSACLG00000004985)	INTS1 (ENSACLG00000004997)	ENSACLG00000005119	micall2a (ENSACLG00000005130)	UNCX (ENSACLG00000005200)	zfand2a (ENSACLG00000005210)	GALR2 (ENSACLG00000005393)
Tiger tail seahorse	DUPLICATION
Tiger tail seahorse	DUPLICATION
Tiger tail seahorse	MODERN SPECIES	131	snrnp25 (ENSHCOG00000007360)	ENSHCOG00000007307	ENSHCOG00000007291	ENSHCOG00000007280	ENSHCOG00000007276	ENSHCOG00000000233	ENSHCOG00000007265	ENSHCOG00000007248	mpg (ENSHCOG00000007236)	ENSHCOG00000007220	rhbdf1a (ENSHCOG00000007202)	aanat2 (ENSHCOG00000007163)	mgrn1b (ENSHCOG00000007149)	cdip1 (ENSHCOG00000007130)	polr3k (ENSHCOG00000007116)	ENSHCOG00000007107 #22	lfng (ENSHCOG00000007073)	TTYH3 (ENSHCOG00000007055)	snx8a (ENSHCOG00000007010)	nudt1 (ENSHCOG00000006992)	MRM2 (ENSHCOG00000006971)	ELFN1 (ENSHCOG00000006962)	psmg3 (ENSHCOG00000006946)	tmem184a (ENSHCOG00000006921)	mafk (ENSHCOG00000006902)	INTS1 (ENSHCOG00000006874)	ENSHCOG00000006771	ENSHCOG00000006758	UNCX (ENSHCOG00000006736)	zfand2a (ENSHCOG00000006706)	ENSHCOG00000006670
Tiger tail seahorse	MODERN SPECIES	31	ENSHCOG00000018431	anks4b (ENSHCOG00000000489)	ENSHCOG00000018417	DXO (ENSHCOG00000018381)	ENSHCOG00000018327	ENSHCOG00000018292	DXO (ENSHCOG00000018279)	stk19 (ENSHCOG00000018274)	rac1b (ENSHCOG00000018264)	SMIM10 (ENSHCOG00000018241)	CYTH3 (ENSHCOG00000018227)	ENSHCOG00000018202	cep112 (ENSHCOG00000018129)	axin2 (ENSHCOG00000017589)	cdip1 (ENSHCOG00000017550)	ENSHCOG00000017533 #22
Tiger tail seahorse	DUPLICATION
Tiger tail seahorse	MODERN SPECIES	484																RPS11 (ENSHCOG00000000811) #22	ENSHCOG00000005503	RPS11 (ENSHCOG00000005673) #22	ENSHCOG00000005684
Tiger tail seahorse	MODERN SPECIES	484														RPS11 (ENSHCOG00000000811) #22	ENSHCOG00000005503	RPS11 (ENSHCOG00000005673) #22	ENSHCOG00000005684
Protacanthopterygii	ANCESTRAL SPECIES	5	ENSGT00940000156604	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957	ENSGT00940000166807	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b	ENSGT00940000157961.B	ENSGT00950000183080.a.b.b.b	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a	ENSGT01090000260003.a.b.b.b	ENSGT00390000002732 #22	ENSGT00940000158717	ENSGT00950000183060.a.a.d.b	ENSGT00460000041594	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000161391.a	ENSGT00390000000324	ENSGT00940000153861.a	ENSGT00940000160044	ENSGT00390000015743	ENSGT00940000165437	ENSGT00940000160222.c	ENSGT00940000161420.g.b	ENSGT00940000159648	ENSGT01090000260051.a
Northern pike	MODERN SPECIES	10	ENSELUG00000000839	PLEKHH3 (ENSELUG00000019517)	tubg1 (ENSELUG00000019579)	ENSELUG00000019597	ENSELUG00000019608	psmc3ip (ENSELUG00000019653)	mlx (ENSELUG00000019689)	FMNL1 (ENSELUG00000019721)	SRCIN1 (ENSELUG00000019757)	arf2a (ENSELUG00000019848)	wnt9b (ENSELUG00000019864)	gosr2 (ENSELUG00000019895)	gpatch8 (ENSELUG00000019920)	ENSELUG00000020021	baxa (ENSELUG00000020047)	rps11 (ENSELUG00000020082) #22	lfng (ENSELUG00000020099)	TTYH3 (ENSELUG00000020113)	snx8a (ENSELUG00000020183)	nudt1 (ENSELUG00000029421)	mrm2 (ENSELUG00000020209)	ELFN1 (ENSELUG00000020224)	psmg3 (ENSELUG00000031081)	tmem184a (ENSELUG00000020262)	mafk (ENSELUG00000020280)	INTS1 (ENSELUG00000020382)	ENSELUG00000034563	micall2a (ENSELUG00000020456)	ENSELUG00000030390	UNCX (ENSELUG00000020472)	zfand2a (ENSELUG00000000896)
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	486	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b.g	ENSGT00940000156292.g.b.h.b	ENSGT00940000157961.B	ENSGT00730000111690.A.d.a.a	ENSGT00950000183080.a.b.b.b.b	ENSGT00940000158599.g	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a.e	ENSGT01090000260003.a.b.b.b.h	ENSGT00390000002732.l #22	ENSGT00940000156497.a.f	ENSGT01090000260003.a.b.b.b.g	ENSGT00390000002732.k.a #22	ENSGT00390000002732.k.b #22	ENSGT00940000158717.n	ENSGT00950000183060.a.a.d.b.c
Huchen	MODERN SPECIES	2551								ENSHHUG00000052044	arf2a (ENSHHUG00000052046)	wnt9b (ENSHHUG00000052062)	ENSHHUG00000052068	gosr2 (ENSHHUG00000052069)	gpatch8 (ENSHHUG00000052072)	ENSHHUG00000052073	baxa (ENSHHUG00000052076)	rps11 (ENSHHUG00000052077) #22
Salmoninae_a	ANCESTRAL SPECIES	124									ENSGT00940000158599.h	ENSGT00940000164674	ENSGT00940000159523.g.b	ENSGT00940000156497.a.e	ENSGT01090000260003.a.b.b.b.h	ENSGT00390000002732.l #22	ENSGT01090000260003.a.b.b.b.g.a.b	ENSGT00390000002732.k.a #22	ENSGT00940000158717.n.c.a	ENSGT00950000183060.a.a.d.b.d	ENSGT00460000041594	ENSGT00390000000341.d	ENSGT00730000111241.p	ENSGT00940000161391.a.f	ENSGT00390000000324.k	ENSGT00940000153861.a.d.b	ENSGT00940000160044.c	ENSGT00390000015743.l	ENSGT00940000165437.a	ENSGT00940000160222.c.c	ENSGT00940000161420.g.b.e	ENSGT00940000159648.c	ENSGT01090000260051.a.gd.a
Salmo	ANCESTRAL SPECIES	28	ENSGT00940000156957.u.a	ENSGT00940000166807.d	ENSGT00390000006890.p	ENSGT00940000157377.f	ENSGT00940000156292.g.b.h.b	ENSGT00940000157961.B.g	ENSGT00730000111690.A.c.b	ENSGT00950000183080.a.b.b.b.b	ENSGT00940000158599.g	ENSGT00950000183192.a.b.e	ENSGT00940000159523.h	ENSGT00940000156497.a.e	ENSGT01090000260003.a.b.b.b.h	ENSGT00390000002732.l #22	ENSGT01090000260003.a.b.b.b.g.a.b	ENSGT00390000002732.k.a #22	ENSGT00940000158717.n.c.a	ENSGT00950000183060.a.a.d.b.d	ENSGT00460000041594.u	ENSGT00390000000341.d	ENSGT00730000111241.o	ENSGT00940000161391.a.e	ENSGT00390000000324.l.d	ENSGT00940000153861.a.d.a.b	ENSGT00940000160044.d	ENSGT00390000015743.k	ENSGT00940000165437.b	ENSGT00940000160222.c.d	ENSGT00940000161420.g.b.f.b	ENSGT00940000159648.d	ENSGT01090000260051.a.gd.b
Atlantic salmon	MODERN SPECIES	25	tubg1 (ENSSSAG00000007347)	ENSSSAG00000121715	mlx (ENSSSAG00000093387)	ENSSSAG00000002795	ENSSSAG00000110616	ENSSSAG00000020291	ARF1 (ENSSSAG00000064443)	wnt9b (ENSSSAG00000064436)	gosr2 (ENSSSAG00000064427)	gpatch8 (ENSSSAG00000064415)	ENSSSAG00000064407	ENSSSAG00000115465 #22	ENSSSAG00000109646 #22	baxa (ENSSSAG00000064392)	baxa (ENSSSAG00000097134)	ENSSSAG00000064317 #22	lfng (ENSSSAG00000098765)	ENSSSAG00000061403	snx8a (ENSSSAG00000061160)	nudt1 (ENSSSAG00000061114)	ELFN1 (ENSSSAG00000108085)	psmg3 (ENSSSAG00000061048)	tmem184a (ENSSSAG00000059307)	mafk (ENSSSAG00000107064)	INTS1 (ENSSSAG00000041419)	ENSSSAG00000060925	micall2a (ENSSSAG00000043454)	UNCX (ENSSSAG00000095771)	zfand2a (ENSSSAG00000056181)	ENSSSAG00000056175	pla2g10 (ENSSSAG00000056156)
River trout	MODERN SPECIES	25	EZH1 (ENSSTUG00000004608)	ENSSTUG00000008123	tubg1 (ENSSTUG00000008339)	ENSSTUG00000008383	psmc3ip (ENSSTUG00000008439)	mlx (ENSSTUG00000008484)	FMNL1 (ENSSTUG00000008538)	SRCIN1 (ENSSTUG00000008740)	arf2a (ENSSTUG00000008869)	wnt9b (ENSSTUG00000008889)	gosr2 (ENSSTUG00000008910)	gpatch8 (ENSSTUG00000008923)	ENSSTUG00000008945	ENSSTUG00000008951	baxa (ENSSTUG00000008994)	RPS11 (ENSSTUG00000009008) #22	lfng (ENSSTUG00000009145)	TTYH3 (ENSSTUG00000009177)	snx8a (ENSSTUG00000009494)	nudt1 (ENSSTUG00000009545)	MRM2 (ENSSTUG00000009555)	ELFN1 (ENSSTUG00000009563)	psmg3 (ENSSTUG00000009570)	tmem184a (ENSSTUG00000009590)	mafk (ENSSTUG00000009643)	INTS1 (ENSSTUG00000009655)	ENSSTUG00000009963	micall2a (ENSSTUG00000009974)	UNCX (ENSSTUG00000009986)	zfand2a (ENSSTUG00000009995)	ENSSTUG00000010028
Oncorhynchus	ANCESTRAL SPECIES	48									ENSGT00940000158599.g.b	ENSGT00950000183192.a.b.g	ENSGT00940000159523.g.b	ENSGT00940000156497.a.e	ENSGT01090000260003.a.b.b.b.h	ENSGT00390000002732.l #22	ENSGT01090000260003.a.b.b.b.g.a.b	ENSGT00390000002732.k.a #22	ENSGT00940000164975	ENSGT00940000158717.n.c.a	ENSGT00950000183060.a.a.d.b.d	ENSGT00460000041594.w	ENSGT00390000000341.c	ENSGT00730000111241.p.b	ENSGT00940000161391.a.e	ENSGT00390000000324.l.c	ENSGT00940000153861.a.c	ENSGT00940000160044.d	ENSGT00390000015743.k	ENSGT00940000165437.b	ENSGT00940000160222.c.d	ENSGT00940000161420.g.b.f	ENSGT00940000159648.d
Rainbow trout	MODERN SPECIES	4	ENSOMYG00000009653	psmc3ip (ENSOMYG00000009668)	mlx (ENSOMYG00000009700)	ENSOMYG00000010533	ENSOMYG00000074546	ENSOMYG00000014554	ENSOMYG00000014569	ENSOMYG00000054493	arf2a (ENSOMYG00000014584)	wnt9b (ENSOMYG00000014598)	gosr2 (ENSOMYG00000014605)	gpatch8 (ENSOMYG00000014617)	ENSOMYG00000014626	baxa (ENSOMYG00000053701)	ENSOMYG00000074111 #22	rs11 (ENSOMYG00000014695) #22	ENSOMYG00000014645	ENSOMYG00000061130	lfng (ENSOMYG00000014845)	ENSOMYG00000014913	snx8a (ENSOMYG00000015476)	nudt1 (ENSOMYG00000015543)	rrmj2 (ENSOMYG00000015554)	ENSOMYG00000055445	ELFN1 (ENSOMYG00000015573)	psmg3 (ENSOMYG00000015586)	tmem184a (ENSOMYG00000015626)	mafk (ENSOMYG00000015889)	INTS1 (ENSOMYG00000015945)	ENSOMYG00000072392	micall2a (ENSOMYG00000016236)
Salmoninae	ANCESTRAL SPECIES	486	ENSGT00940000157377	ENSGT00940000156292.g.b.g	ENSGT00940000156292.g.b.h.b	ENSGT00940000157961.B	ENSGT00730000111690.A.d.a.a	ENSGT00950000183080.a.b.b.b.b	ENSGT00940000158599.g	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a.e	ENSGT01090000260003.a.b.b.b.h	ENSGT00390000002732.l #22	ENSGT00940000156497.a.f	ENSGT01090000260003.a.b.b.b.g	ENSGT00390000002732.k.a #22	ENSGT00390000002732.k.b #22	ENSGT00940000158717.n	ENSGT00950000183060.a.a.d.b.c
Salmoninae_a	ANCESTRAL SPECIES	140	ENSGT00940000156957.v.a.a	ENSGT00940000166807.d	ENSGT00390000006890.p	ENSGT00940000157377	ENSGT00940000156292.g.b.g	ENSGT00940000156292.g.b.h.a	ENSGT00940000157961.B.h	ENSGT00950000183080.a.b.b.b.a	ENSGT00730000111690.A.d.a.a	ENSGT00950000183080.a.b.b.b.b	ENSGT00940000158599.g	ENSGT00950000183192.a.b	ENSGT00940000159523.g.a	ENSGT00940000156497.a.f	ENSGT01090000260003.a.b.b.b.g.a.a	ENSGT00390000002732.k.b #22	ENSGT00940000158717.n.c.b	ENSGT00950000183060.a.a.d.b.c
Salmo	ANCESTRAL SPECIES	55	ENSGT00940000164286.j.a.a.b.j.b	ENSGT00940000160264.e	ENSGT00940000156604.f	ENSGT00940000156957.u.b	ENSGT00940000166807.c	ENSGT00390000006890.o	ENSGT00940000157377.e	ENSGT00940000156292.g.b.h.a	ENSGT00940000157961.B.h	ENSGT00950000183080.a.b.b.b.a	ENSGT00940000158599.h	ENSGT00950000183192.a.b.f	ENSGT00940000159523.g.a	ENSGT00940000156497.a.f	ENSGT01090000260003.a.b.b.b.g.a.a	ENSGT00390000002732.k.b #22	ENSGT00940000158717.n.c.b	ENSGT00950000183060.a.a.d.b.c	ENSGT00460000041594.v	ENSGT00390000000341.c	ENSGT00730000111241.p	ENSGT00940000161391.a.f	ENSGT00390000000324.k	ENSGT00940000153861.a.c	ENSGT00940000160044.c	ENSGT00390000015743.l	ENSGT00940000165437.a	ENSGT00940000160222.c.c	ENSGT00940000161420.g.b.f.a	ENSGT00940000159648.c	ENSGT01090000260051.a.gd.a
River trout	MODERN SPECIES		PLEKHH3 (ENSSTUG00000022342)	tubg1 (ENSSTUG00000022356)	ENSSTUG00000022428	psmc3ip (ENSSTUG00000022433)	mlx (ENSSTUG00000022438)	FMNL1 (ENSSTUG00000022481)	SRCIN1 (ENSSTUG00000022975)	ENSSTUG00000023144	ENSSTUG00000023145	arf2a (ENSSTUG00000023152)	wnt9b (ENSSTUG00000023177)	gosr2 (ENSSTUG00000023214)	gpatch8 (ENSSTUG00000023223)	ENSSTUG00000023244	baxa (ENSSTUG00000023284)	RPS11 (ENSSTUG00000023342) #22	lfng (ENSSTUG00000023428)	TTYH3 (ENSSTUG00000023450)	snx8a (ENSSTUG00000023572)	nudt1 (ENSSTUG00000023648)	MRM2 (ENSSTUG00000023654)	ELFN1 (ENSSTUG00000023661)	tmem184a (ENSSTUG00000023672)	mafk (ENSSTUG00000023857)	INTS1 (ENSSTUG00000023887)	ENSSTUG00000024609	micall2a (ENSSTUG00000024618)	UNCX (ENSSTUG00000024639)	zfand2a (ENSSTUG00000024650)	ENSSTUG00000024691	axin1 (ENSSTUG00000024711)
Atlantic salmon	MODERN SPECIES	22	EZH1 (ENSSSAG00000004144)	ENSSSAG00000004957	PLEKHH3 (ENSSSAG00000005108)	tubg1 (ENSSSAG00000005123)	ENSSSAG00000005139	ENSSSAG00000115173	mlx (ENSSSAG00000005151)	ENSSSAG00000005436	ENSSSAG00000002296	arf2a (ENSSSAG00000022054)	wnt9b (ENSSSAG00000022591)	gosr2 (ENSSSAG00000121453)	gpatch8 (ENSSSAG00000023468)	ENSSSAG00000023806	baxa (ENSSSAG00000106064)	ENSSSAG00000024307 #22	lfng (ENSSSAG00000113402)	ENSSSAG00000116240	snx8a (ENSSSAG00000034005)	nudt1 (ENSSSAG00000040003)	MRM2 (ENSSSAG00000109584)	ELFN1 (ENSSSAG00000110233)	psmg3 (ENSSSAG00000040072)	tmem184a (ENSSSAG00000040202)	mafk (ENSSSAG00000087498)	INTS1 (ENSSSAG00000056269)	ENSSSAG00000102686	micall2a (ENSSSAG00000088523)	UNCX (ENSSSAG00000120977)	zfand2a (ENSSSAG00000043488)	ENSSSAG00000118213
Oncorhynchus	ANCESTRAL SPECIES	33	ENSGT00940000156604.f	ENSGT00940000166174.g	ENSGT00940000159764.vb	ENSGT00940000156957.v.a.a.a	ENSGT00940000166807.d	ENSGT00390000006890.p	ENSGT00940000157377.h.a.b	ENSGT00940000156292.g.b.g.b	ENSGT00730000111690.A.d.a.a	ENSGT00950000183080.a.b.b.b.b	ENSGT00940000158599.g.a	ENSGT00950000183192.a.b.h	ENSGT00940000159523.g.a	ENSGT00940000156497.a.f	ENSGT01090000260003.a.b.b.b.g.a.a	ENSGT00390000002732.k.b #22	ENSGT00940000158717.n.c.b	ENSGT00950000183060.a.a.d.b.c	ENSGT00460000041594.x	ENSGT00390000000341.d.a	ENSGT00730000111241.p.a	ENSGT00940000161391.a.f	ENSGT00390000000324.k	ENSGT00940000153861.a.d.b	ENSGT00940000160044.c	ENSGT00390000015743.l	ENSGT00940000165437.a	ENSGT00940000160222.c.c	ENSGT00940000161420.g.b.e	ENSGT00940000159648.c	ENSGT01090000260051.a.gd.a
Rainbow trout	MODERN SPECIES	3	psmc3ip (ENSOMYG00000068842)	mlx (ENSOMYG00000012302)	ENSOMYG00000012353	ENSOMYG00000052602	ENSOMYG00000072584	ENSOMYG00000076620	ENSOMYG00000067529	ENSOMYG00000072998	ENSOMYG00000065226	arf2a (ENSOMYG00000012534)	wnt9b (ENSOMYG00000012571)	gosr2 (ENSOMYG00000012590)	gpatch8 (ENSOMYG00000012610)	ENSOMYG00000012627	baxa (ENSOMYG00000012643)	ENSOMYG00000012680 #22	lfng (ENSOMYG00000012777)	ENSOMYG00000012820	snx8a (ENSOMYG00000013109)	nudt1 (ENSOMYG00000013146)	MRM2 (ENSOMYG00000013153)	ELFN1 (ENSOMYG00000013161)	psmg3 (ENSOMYG00000013170)	tmem184a (ENSOMYG00000013286)	mafk (ENSOMYG00000067017)	INTS1 (ENSOMYG00000013856)	ENSOMYG00000014137	micall2a (ENSOMYG00000014148)	UNCX (ENSOMYG00000014160)	zfand2a (ENSOMYG00000014180)	ENSOMYG00000063085
Oncorhynchus_a	ANCESTRAL SPECIES	58	ENSGT00940000166174.h	ENSGT00940000159764.wb	ENSGT00940000156957.v.a.a.b	ENSGT00940000166807.c	ENSGT00390000006890.o	ENSGT00940000157377.h.a.a	ENSGT00940000156292.g.b.g.a	ENSGT00940000157961.B.h	ENSGT00730000111690.A.d.a.b	ENSGT00950000183080.a.b.b.b.a	ENSGT00940000158599.h	ENSGT00940000164674.a	ENSGT00940000159523.g.a	ENSGT00940000156497.a.f	ENSGT01090000260003.a.b.b.b.g.a.a	ENSGT00390000002732.k.b #22	ENSGT00940000158717.n.c.a	ENSGT00940000158717.n.c.b	ENSGT00950000183060.a.a.d.b.c	ENSGT00460000041594.x	ENSGT00390000000341.d.a	ENSGT00730000111241.p.a	ENSGT00940000161391.a.f	ENSGT00390000000324.k	ENSGT00940000153861.a.d.b	ENSGT00940000160044.c	ENSGT00390000015743.l	ENSGT00940000165437.a	ENSGT00940000160222.c.c	ENSGT00940000161420.g.b.e	ENSGT00940000159648.c
Chinook salmon	MODERN SPECIES	2912									clptm1l (ENSOTSG00005025325)	ENSOTSG00005025320	rplp1 (ENSOTSG00005025319)	ENSOTSG00005024811	ENSOTSG00005024810	ENSOTSG00005024807	baxa (ENSOTSG00005024806)	rps11 (ENSOTSG00005024800) #22	lfng (ENSOTSG00005024797)	TTYH3 (ENSOTSG00005023335)	snx8a (ENSOTSG00005023321)	nudt1 (ENSOTSG00005023319)	MRM2 (ENSOTSG00005023318)	ELFN1 (ENSOTSG00005023316)	psmg3 (ENSOTSG00005023314)	tmem184a (ENSOTSG00005023054)	mafk (ENSOTSG00005023052)	INTS1 (ENSOTSG00005023000)	ENSOTSG00005022992	micall2a (ENSOTSG00005022990)	UNCX (ENSOTSG00005022989)	zfand2a (ENSOTSG00005022988)	ENSOTSG00005022986
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES	1	ENSOKIG00005047984	psmc3ip (ENSOKIG00005047992)	mlx (ENSOKIG00005048006)	FMNL1 (ENSOKIG00005048066)	SRCIN1 (ENSOKIG00005048239)	ENSOKIG00005048257	ENSOKIG00005048263	arf2a (ENSOKIG00005020713)	wnt9b (ENSOKIG00005020721)	gosr2 (ENSOKIG00005020749)	gpatch8 (ENSOKIG00005020769)	ENSOKIG00005020776	baxa (ENSOKIG00005020819)	RPS11 (ENSOKIG00005020830) #22	baxa (ENSOKIG00005020875)	ENSOKIG00005021042 #22	TTYH3 (ENSOKIG00005021222)	lfng (ENSOKIG00005021290)	snx8a (ENSOKIG00005021344)	nudt1 (ENSOKIG00005021458)	MRM2 (ENSOKIG00005021475)	ELFN1 (ENSOKIG00005021489)	psmg3 (ENSOKIG00005021499)	tmem184a (ENSOKIG00005021542)	mafk (ENSOKIG00005021750)	ENSOKIG00005021827	micall2a (ENSOKIG00005021836)	UNCX (ENSOKIG00005021852)	zfand2a (ENSOKIG00005021863)	ENSOKIG00005021884	axin1 (ENSOKIG00005021914)
Coho salmon	MODERN SPECIES	26	ENSOKIG00005039318	psmc3ip (ENSOKIG00005039331)	mlx (ENSOKIG00005039384)	FMNL1 (ENSOKIG00005039489)	SRCIN1 (ENSOKIG00005039988)	ENSOKIG00005040073	ENSOKIG00005040083	arf2a (ENSOKIG00005040100)	wnt9b (ENSOKIG00005040147)	ENSOKIG00005040194	gpatch8 (ENSOKIG00005040224)	ENSOKIG00005040248	ENSOKIG00005040257	ENSOKIG00005040268	baxa (ENSOKIG00005040347)	ENSOKIG00005040371 #22	lfng (ENSOKIG00005012845)	TTYH3 (ENSOKIG00005012888)	snx8a (ENSOKIG00005013231)	nudt1 (ENSOKIG00005013319)	MRM2 (ENSOKIG00005013333)	ELFN1 (ENSOKIG00005013348)	ENSOKIG00005013352	psmg3 (ENSOKIG00005013364)	tmem184a (ENSOKIG00005013399)	mafk (ENSOKIG00005013470)	INTS1 (ENSOKIG00005013521)	ENSOKIG00005013745	micall2a (ENSOKIG00005013763)	UNCX (ENSOKIG00005013778)	zfand2a (ENSOKIG00005013794)
Salmoninae	ANCESTRAL SPECIES	486		ENSGT00940000156957.v.a.b	ENSGT00940000166807.c	ENSGT00390000006890	ENSGT00940000157377	ENSGT00940000156292.g.b.g	ENSGT00940000156292.g.b.h.b	ENSGT00940000157961.B	ENSGT00730000111690.A.d.a.a	ENSGT00950000183080.a.b.b.b.b	ENSGT00940000158599.g	ENSGT00950000183192.a.b	ENSGT00940000159523	ENSGT00940000156497.a.e	ENSGT01090000260003.a.b.b.b.h	ENSGT00390000002732.l #22	ENSGT00940000156497.a.f	ENSGT01090000260003.a.b.b.b.g	ENSGT00390000002732.k.a #22	ENSGT00390000002732.k.b #22	ENSGT00940000158717.n	ENSGT00950000183060.a.a.d.b.c
Salmoninae_a	ANCESTRAL SPECIES	124											ENSGT00940000158599.h	ENSGT00940000164674	ENSGT00940000159523.g.b	ENSGT00940000156497.a.e	ENSGT01090000260003.a.b.b.b.h	ENSGT00390000002732.l #22	ENSGT01090000260003.a.b.b.b.g.a.b	ENSGT00390000002732.k.a #22	ENSGT00940000158717.n.c.a	ENSGT00950000183060.a.a.d.b.d	ENSGT00460000041594	ENSGT00390000000341.d	ENSGT00730000111241.p	ENSGT00940000161391.a.f	ENSGT00390000000324.k	ENSGT00940000153861.a.d.b	ENSGT00940000160044.c	ENSGT00390000015743.l	ENSGT00940000165437.a	ENSGT00940000160222.c.c	ENSGT00940000161420.g.b.e
Salmo	ANCESTRAL SPECIES	28	ENSGT00940000166174	ENSGT00940000159764	ENSGT00940000156957.u.a	ENSGT00940000166807.d	ENSGT00390000006890.p	ENSGT00940000157377.f	ENSGT00940000156292.g.b.h.b	ENSGT00940000157961.B.g	ENSGT00730000111690.A.c.b	ENSGT00950000183080.a.b.b.b.b	ENSGT00940000158599.g	ENSGT00950000183192.a.b.e	ENSGT00940000159523.h	ENSGT00940000156497.a.e	ENSGT01090000260003.a.b.b.b.h	ENSGT00390000002732.l #22	ENSGT01090000260003.a.b.b.b.g.a.b	ENSGT00390000002732.k.a #22	ENSGT00940000158717.n.c.a	ENSGT00950000183060.a.a.d.b.d	ENSGT00460000041594.u	ENSGT00390000000341.d	ENSGT00730000111241.o	ENSGT00940000161391.a.e	ENSGT00390000000324.l.d	ENSGT00940000153861.a.d.a.b	ENSGT00940000160044.d	ENSGT00390000015743.k	ENSGT00940000165437.b	ENSGT00940000160222.c.d	ENSGT00940000161420.g.b.f.b
Atlantic salmon	DUPLICATION
Atlantic salmon	MODERN SPECIES	25	EZH1 (ENSSSAG00000007550)	ENSSSAG00000007399	PLEKHH3 (ENSSSAG00000007379)	tubg1 (ENSSSAG00000007347)	ENSSSAG00000121715	mlx (ENSSSAG00000093387)	ENSSSAG00000002795	ENSSSAG00000110616	ENSSSAG00000020291	ARF1 (ENSSSAG00000064443)	wnt9b (ENSSSAG00000064436)	gosr2 (ENSSSAG00000064427)	gpatch8 (ENSSSAG00000064415)	ENSSSAG00000064407	ENSSSAG00000115465 #22	ENSSSAG00000109646 #22	baxa (ENSSSAG00000064392)	baxa (ENSSSAG00000097134)	ENSSSAG00000064317 #22	lfng (ENSSSAG00000098765)	ENSSSAG00000061403	snx8a (ENSSSAG00000061160)	nudt1 (ENSSSAG00000061114)	ELFN1 (ENSSSAG00000108085)	psmg3 (ENSSSAG00000061048)	tmem184a (ENSSSAG00000059307)	mafk (ENSSSAG00000107064)	INTS1 (ENSSSAG00000041419)	ENSSSAG00000060925	micall2a (ENSSSAG00000043454)	UNCX (ENSSSAG00000095771)
Atlantic salmon	MODERN SPECIES	25	ramp2 (ENSSSAG00000114352)	EZH1 (ENSSSAG00000007550)	ENSSSAG00000007399	PLEKHH3 (ENSSSAG00000007379)	tubg1 (ENSSSAG00000007347)	ENSSSAG00000121715	mlx (ENSSSAG00000093387)	ENSSSAG00000002795	ENSSSAG00000110616	ENSSSAG00000020291	ARF1 (ENSSSAG00000064443)	wnt9b (ENSSSAG00000064436)	gosr2 (ENSSSAG00000064427)	gpatch8 (ENSSSAG00000064415)	ENSSSAG00000064407	ENSSSAG00000115465 #22	ENSSSAG00000109646 #22	baxa (ENSSSAG00000064392)	baxa (ENSSSAG00000097134)	ENSSSAG00000064317 #22	lfng (ENSSSAG00000098765)	ENSSSAG00000061403	snx8a (ENSSSAG00000061160)	nudt1 (ENSSSAG00000061114)	ELFN1 (ENSSSAG00000108085)	psmg3 (ENSSSAG00000061048)	tmem184a (ENSSSAG00000059307)	mafk (ENSSSAG00000107064)	INTS1 (ENSSSAG00000041419)	ENSSSAG00000060925	micall2a (ENSSSAG00000043454)
Oncorhynchus	ANCESTRAL SPECIES	48											ENSGT00940000158599.g.b	ENSGT00950000183192.a.b.g	ENSGT00940000159523.g.b	ENSGT00940000156497.a.e	ENSGT01090000260003.a.b.b.b.h	ENSGT00390000002732.l #22	ENSGT01090000260003.a.b.b.b.g.a.b	ENSGT00390000002732.k.a #22	ENSGT00940000164975	ENSGT00940000158717.n.c.a	ENSGT00950000183060.a.a.d.b.d	ENSGT00460000041594.w	ENSGT00390000000341.c	ENSGT00730000111241.p.b	ENSGT00940000161391.a.e	ENSGT00390000000324.l.c	ENSGT00940000153861.a.c	ENSGT00940000160044.d	ENSGT00390000015743.k	ENSGT00940000165437.b	ENSGT00940000160222.c.d
Rainbow trout	MODERN SPECIES	4	tubg1 (ENSOMYG00000009558)	ENSOMYG00000009653	psmc3ip (ENSOMYG00000009668)	mlx (ENSOMYG00000009700)	ENSOMYG00000010533	ENSOMYG00000074546	ENSOMYG00000014554	ENSOMYG00000014569	ENSOMYG00000054493	arf2a (ENSOMYG00000014584)	wnt9b (ENSOMYG00000014598)	gosr2 (ENSOMYG00000014605)	gpatch8 (ENSOMYG00000014617)	ENSOMYG00000014626	baxa (ENSOMYG00000053701)	ENSOMYG00000074111 #22	rs11 (ENSOMYG00000014695) #22	ENSOMYG00000014645	ENSOMYG00000061130	lfng (ENSOMYG00000014845)	ENSOMYG00000014913	snx8a (ENSOMYG00000015476)	nudt1 (ENSOMYG00000015543)	rrmj2 (ENSOMYG00000015554)	ENSOMYG00000055445	ELFN1 (ENSOMYG00000015573)	psmg3 (ENSOMYG00000015586)	tmem184a (ENSOMYG00000015626)	mafk (ENSOMYG00000015889)	INTS1 (ENSOMYG00000015945)	ENSOMYG00000072392
Oncorhynchus_a	ANCESTRAL SPECIES	42	ENSGT00940000166174.g	ENSGT00940000159764.vb	ENSGT00940000156957.v.a.a.a	ENSGT00940000166807.d	ENSGT00390000006890.p	ENSGT00940000157377.h.a.b	ENSGT00940000156292.g.b.g.b	ENSGT00730000111690.A.d.a.a	ENSGT00950000183080.a.b.b.b.b	ENSGT00940000158599.g.a	ENSGT00950000183192.a.b.g	ENSGT00940000159523.g.b	ENSGT00940000156497.a.e	ENSGT01090000260003.a.b.b.b.h.a	ENSGT00940000164975	ENSGT00390000002732.l #22	ENSGT00950000183060.a.a.d.b.d	ENSGT00460000041594.w	ENSGT00390000000341.d.b	ENSGT00730000111241.p.b	ENSGT00940000161391.a.e	ENSGT00390000000324.l.c	ENSGT00940000153861.a.c	ENSGT00940000160044.d	ENSGT00940000167841	ENSGT00390000015743.k	ENSGT00940000165437.b	ENSGT00940000160222.c.d	ENSGT00940000161420.g.b.f	ENSGT00940000159648.d	ENSGT01090000260051.a.gd.b
Coho salmon	MODERN SPECIES	1	PLEKHH3 (ENSOKIG00005047940)	tubg1 (ENSOKIG00005047949)	ENSOKIG00005047984	psmc3ip (ENSOKIG00005047992)	mlx (ENSOKIG00005048006)	FMNL1 (ENSOKIG00005048066)	SRCIN1 (ENSOKIG00005048239)	ENSOKIG00005048257	ENSOKIG00005048263	arf2a (ENSOKIG00005020713)	wnt9b (ENSOKIG00005020721)	gosr2 (ENSOKIG00005020749)	gpatch8 (ENSOKIG00005020769)	ENSOKIG00005020776	baxa (ENSOKIG00005020819)	RPS11 (ENSOKIG00005020830) #22	baxa (ENSOKIG00005020875)	ENSOKIG00005021042 #22	TTYH3 (ENSOKIG00005021222)	lfng (ENSOKIG00005021290)	snx8a (ENSOKIG00005021344)	nudt1 (ENSOKIG00005021458)	MRM2 (ENSOKIG00005021475)	ELFN1 (ENSOKIG00005021489)	psmg3 (ENSOKIG00005021499)	tmem184a (ENSOKIG00005021542)	mafk (ENSOKIG00005021750)	ENSOKIG00005021827	micall2a (ENSOKIG00005021836)	UNCX (ENSOKIG00005021852)	zfand2a (ENSOKIG00005021863)
Chinook salmon	MODERN SPECIES	1734																RPS11 (ENSOTSG00005032538) #22
Elephant shark	MODERN SPECIES	1764										ENSCMIG00000014670	ENSCMIG00000014665	ENSCMIG00000014661	rbfox1 (ENSCMIG00000014647)	ENSCMIG00000014639	ENSCMIG00000014635	rps11 (ENSCMIG00000014614) #22	dhdh.2 (ENSCMIG00000014610)	ENSCMIG00000014607	ENSCMIG00000014605	PPP6R1 (ENSCMIG00000014552)	hspbp1 (ENSCMIG00000014502)	ENSCMIG00000014498	ENSCMIG00000014495	AP2A1 (ENSCMIG00000014079) #36	ENSCMIG00000013862	ENSCMIG00000013858 #32	ENSCMIG00000013852 ##29	ENSCMIG00000013850
Cyclostomata	ANCESTRAL SPECIES	1218															ENSGT00960000187074	ENSGT00390000002732 #22
Lamprey	MODERN SPECIES	323															tbc1d15 (ENSPMAG00000008223)	rps11 (ENSPMAG00000008190) #22
Hagfish	MODERN SPECIES	862															ENSEBUG00000014002	rps11 (ENSEBUG00000005926) #22	ENSEBUG00000005648	ENSEBUG00000002638	ENSEBUG00000006577	rergla (ENSEBUG00000016398)	ENSEBUG00000009294	nucb2a (ENSEBUG00000008172)	ENSEBUG00000006380	ENSEBUG00000003793	ENSEBUG00000015117	ENSEBUG00000003654	ENSEBUG00000001520	dimt1l (ENSEBUG00000006158)	ENSEBUG00000013670	gpn1 (ENSEBUG00000010184)	ENSEBUG00000011773
Ciona	ANCESTRAL SPECIES	279																ENSGT00390000002732 #22	ENSGT00660000097278	ENSGT00940000173417	ENSGT00940000159046.B
Ciona savignyi	MODERN SPECIES	1	ENSCSAVG00000010049	ENSCSAVG00000010046	ENSCSAVG00000010042	ENSCSAVG00000009920	ENSCSAVG00000009917	ENSCSAVG00000009915	ENSCSAVG00000009912	ENSCSAVG00000009906	ENSCSAVG00000009902	ENSCSAVG00000009899	ENSCSAVG00000009897	ENSCSAVG00000009725	ENSCSAVG00000009722	ENSCSAVG00000009712	ENSCSAVG00000009709	ENSCSAVG00000009697 #22	ENSCSAVG00000009694	ENSCSAVG00000009691	ENSCSAVG00000009679	ENSCSAVG00000009672	ENSCSAVG00000009669	ENSCSAVG00000009668	ENSCSAVG00000009666	ENSCSAVG00000009618	ENSCSAVG00000009616	ENSCSAVG00000009615	ENSCSAVG00000009609	ENSCSAVG00000009604	ENSCSAVG00000009603	ENSCSAVG00000009598	ENSCSAVG00000009597
Ciona intestinalis	MODERN SPECIES	1	ENSCING00000015022	ENSCING00000003874	ENSCING00000003869	ENSCING00000003865	ENSCING00000016853	ENSCING00000002146	ENSCING00000017979	ENSCING00000002132	ENSCING00000002125	ENSCING00000016828	ENSCING00000015443	ENSCING00000002096	ENSCING00000021995	ENSCING00000025065	ENSCING00000015113	ENSCING00000005250 #22	ENSCING00000005224	ENSCING00000024310	ENSCING00000015105	ENSCING00000019476	ENSCING00000005221	ENSCING00000022586	ENSCING00000015093	ENSCING00000002699	ENSCING00000018146	ENSCING00000018028	ENSCING00000002696	ENSCING00000015082	ENSCING00000015081	ENSCING00000002690	ENSCING00000015079
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT00390000002732 #22
Fruitfly	MODERN SPECIES	17	CG30203 (FBgn0050203)	CG17739 (FBgn0033710)	salto (FBgn0061197)	CG8850 (FBgn0033708)	CG42700 (FBgn0261611)	Cam (FBgn0000253)	Vha36-2 (FBgn0033706)	CG13168 (FBgn0033705)	CG43244 (FBgn0262889)	CG43316 (FBgn0263021)	CG43315 (FBgn0263020)	CG13170 (FBgn0033703)	CG8854 (FBgn0033702)	CG13171 (FBgn0033701)	Sr-CII (FBgn0020377)	RpS11 (FBgn0033699) #22	CG8858 (FBgn0033698)	Cyp6t3 (FBgn0033697)	Cyp6g2 (FBgn0033696)	Cyp6g1 (FBgn0025454)	SmF (FBgn0000426)	CG33964 (FBgn0053964)	CG13175 (FBgn0033693)	wash (FBgn0033692)	CG8860 (FBgn0033691)	EndoG (FBgn0033690)	CCT5 (FBgn0010621)	SmD3 (FBgn0023167)	Oda (FBgn0014184)	CG34232 (FBgn0085261)	CG13177 (FBgn0040759)
Caenorhabditis elegans	MODERN SPECIES	3	M04B2.6 (WBGene00010848)	M04B2.4 (WBGene00010847)	gfl-1 (WBGene00001585)	mep-1 (WBGene00003218)	M04B2.2 (WBGene00010846)	M04B2.7 (WBGene00010849)	col-128 (WBGene00000702)	F12F6.7 (WBGene00008722)	sec-24.1 (WBGene00004755)	srgp-1 (WBGene00006406)	rib-1 (WBGene00004360)	F12F6.1 (WBGene00008720)	F40F11.4 (WBGene00009589)	F40F11.3 (WBGene00009588)	mig-38 (WBGene00009587)	rps-11 (WBGene00004480) #22	ragc-1 (WBGene00012497)	Y24F12A.1 (WBGene00012496)	dsl-5 (WBGene00001107)	lys-4 (WBGene00003093)	lys-5 (WBGene00003094)	lys-6 (WBGene00003095)	F58B3.4 (WBGene00010231)	mars-1 (WBGene00003415)	F58B3.6 (WBGene00010232)	rbm-17 (WBGene00010233)	ttr-50 (WBGene00010234)	ZK809.1 (WBGene00014085)	prx-2 (WBGene00004192)	ZK809.8 (WBGene00014088)	acl-3 (WBGene00006491)
Yeast	DUPLICATION
Yeast	MODERN SPECIES	1	EDS1 (YBR033W)	HMT1 (YBR034C)	PDX3 (YBR035C)	CSG2 (YBR036C)	SCO1 (YBR037C)	CHS2 (YBR038W)	ATP3 (YBR039W)	FIG1 (YBR040W)	FAT1 (YBR041W)	CST26 (YBR042C)	QDR3 (YBR043C)	TCM62 (YBR044C)	GIP1 (YBR045C)	ZTA1 (YBR046C)	FMP23 (YBR047W)	RPS11B (YBR048W) #22	REB1 (YBR049C)	REG2 (YBR050C)	YBR051W	RFS1 (YBR052C)	YBR053C	YRO2 (YBR054W)	PRP6 (YBR055C)	YBR056W	YBR056W-A	YBR056C-B	MUM2 (YBR057C)	UBP14 (YBR058C)	TSC3 (YBR058C-A)	AKL1 (YBR059C)	ORC2 (YBR060C)
Yeast	MODERN SPECIES	3	SNQ2 (YDR011W)	RPL4B (YDR012W)	PSF1 (YDR013W)	RAD61 (YDR014W)	HED1 (YDR014W-A)	YDR015C	DAD1 (YDR016C)	KCS1 (YDR017C)	YDR018C	GCV1 (YDR019C)	DAS2 (YDR020C)	FAL1 (YDR021W)	YDR022C	SES1 (YDR023W)	FYV1 (YDR024W)	RPS11A (YDR025W) #22	NSI1 (YDR026C)	VPS54 (YDR027C)	REG1 (YDR028C)	YDR029W	RAD28 (YDR030C)	MIX14 (YDR031W)	PST2 (YDR032C)	MRH1 (YDR033W)	LYS14 (YDR034C)	YDR034C-A	YDR034W-B	ARO3 (YDR035W)	EHD3 (YDR036C)	KRS1 (YDR037W)	ENA5 (YDR038C)