Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000182836.b.b.b.a #22
Gnathostomata	ANCESTRAL SPECIES	425										ENSGT00390000012174 #8	ENSGT00940000155587.a.b #7	ENSGT00940000159245	ENSGT00940000157240	ENSGT00390000011821 #21	ENSGT00390000003873 #23	ENSGT00950000182836.b.b.b.a #22	ENSGT00550000074981 #24
Euteleostomi	ANCESTRAL SPECIES	219			ENSGT00390000011821 #21	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000003874 #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25
Sarcopterygii	ANCESTRAL SPECIES	889															ENSGT00390000003874 #19	ENSGT00950000182836.b.b.b.a #22
Tetrapoda	ANCESTRAL SPECIES	144	ENSGT00940000160841	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00940000175678	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821 #21	ENSGT00390000003874 #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26
Amniota	ANCESTRAL SPECIES		ENSGT00940000158589	ENSGT00940000160841	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821 #21	ENSGT00390000003874 #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00520000055625.a	ENSGT00940000155202.i.b	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00940000155600.b	ENSGT00990000203619.A.a
Mammalia	ANCESTRAL SPECIES		ENSGT00940000160841	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00520000055625.a	ENSGT00940000155202.i.b	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00390000004304	ENSGT00940000161545	ENSGT00940000160514	ENSGT00990000203619.A.a	ENSGT01060000248589.C	ENSGT00940000155600.b
Theria	ANCESTRAL SPECIES	1	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00520000055625.a	ENSGT00940000155202.i.b	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00390000004304	ENSGT00940000161545	ENSGT00940000160514	ENSGT00990000203619.A.a	ENSGT01060000248589.C	ENSGT00940000155600.b
Eutheria	ANCESTRAL SPECIES	5	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000158579	ENSGT00940000163845	ENSGT00940000163258	ENSGT00940000158193
Boreoeutheria	ANCESTRAL SPECIES	2	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT01020000234487	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000163845	ENSGT00940000158579	ENSGT00940000155183 #35	ENSGT00940000158193
Laurasiatheria	ANCESTRAL SPECIES	2	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT01020000234487	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00940000163845	ENSGT00510000047718 #33	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977
Laurasiatheria_a	ANCESTRAL SPECIES	3	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT01020000234487	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00940000163845	ENSGT00510000047718 #33	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977
Laurasiatheria_b	ANCESTRAL SPECIES	2	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00940000163845	ENSGT00510000047718 #33	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977
Carnivora	ANCESTRAL SPECIES	10	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000163441.f.a.a.b #34	ENSGT00940000163441.f.b.a.a ##37	ENSGT00940000155183 #35	ENSGT00940000158193
Caniformia	ANCESTRAL SPECIES		ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000163441.f.a.a.b #34	ENSGT00940000163441.f.b.a.a.b ##37	ENSGT00940000163441.f.b.a.a.a ##37	ENSGT00940000155183.a #35
Canidae	ANCESTRAL SPECIES	39	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977	ENSGT01090000259987.a.a.a.i
Canis_lupus	ANCESTRAL SPECIES	38	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00940000163122 #17	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000161526.a.d	ENSGT00940000161526.a.c	ENSGT00940000163441.f.a.a.b.a #34	ENSGT00940000158193
Dingo	MODERN SPECIES	63	PDE9A (ENSCAFG00020018526) #7	WDR4 (ENSCAFG00020018728) #8	NDUFV3 (ENSCAFG00020018747) #9	PKNOX1 (ENSCAFG00020018749) #10	ENSCAFG00020018761 #11	ENSCAFG00020018802 #12	U2AF1 (ENSCAFG00020018861) #13	CRYAA (ENSCAFG00020018863) #14	SIK1 (ENSCAFG00020018879) #15	HSF2BP (ENSCAFG00020018893) #16	ENSCAFG00020018896 #17	RRP1B (ENSCAFG00020018901) #18	PDXK (ENSCAFG00020018948) #19	CSTB (ENSCAFG00020018974) #20	RRP1 (ENSCAFG00020018979) #21	AGPAT3 (ENSCAFG00020018995) #22	TRAPPC10 (ENSCAFG00020019017) #23	PWP2 (ENSCAFG00020019199) #24	GATD3 (ENSCAFG00020019216) #25	ICOSLG (ENSCAFG00020019220) #26	ENSCAFG00020019221 #27	AIRE (ENSCAFG00020019230) #28	PFKL (ENSCAFG00020019252) #29	CFAP410 (ENSCAFG00020019259) #30	TRPM2 (ENSCAFG00020019262) #31	LRRC3 (ENSCAFG00020019276) #32	TSPEAR (ENSCAFG00020019277) #33	ENSCAFG00020019289 #34	ENSCAFG00020019303 #35	ENSCAFG00020019310 #36	ENSCAFG00020019341 #37
Dog	MODERN SPECIES	24	RSPH1 (ENSCAFG00845016424)	SLC37A1 (ENSCAFG00845016674)	ENSCAFG00845016845 #7	WDR4 (ENSCAFG00845016943) #8	ENSCAFG00845017044 #10	CBS (ENSCAFG00845017169) #12	U2AF1 (ENSCAFG00845017455) #13	CRYAA (ENSCAFG00845017570) #14	SIK1 (ENSCAFG00845017641) #15	HSF2BP (ENSCAFG00845017775) #16	ENSCAFG00845017980 #17	RRP1B (ENSCAFG00845018066) #18	PDXK (ENSCAFG00845018299) #19	CSTB (ENSCAFG00845018589) #20	RRP1 (ENSCAFG00845018662) #21	AGPAT3 (ENSCAFG00845018820) #22	ENSCAFG00845018890	TRAPPC10 (ENSCAFG00845018939) #23	PWP2 (ENSCAFG00845019135) #24	GATD3 (ENSCAFG00845019382) #25	ICOSLG (ENSCAFG00845019541) #26	DNMT3L (ENSCAFG00845019683) #27	AIRE (ENSCAFG00845019838) #28	PFKL (ENSCAFG00845020069) #29	ICOSLG (ENSCAFG00845020326) #30	TRPM2 (ENSCAFG00845020419) #31	TSPEAR (ENSCAFG00845020761) #33	ENSCAFG00845020843 ##37	ENSCAFG00845021000 #36	ENSCAFG00845021169	ENSCAFG00845021222 #34
Red fox	MODERN SPECIES	209										ENSVVUG00000024523 #17	HSF2BP (ENSVVUG00000024511) #16	RRP1B (ENSVVUG00000024509) #18	PDXK (ENSVVUG00000024507) #19	CSTB (ENSVVUG00000024503) #20	ENSVVUG00000024498 #21	AGPAT3 (ENSVVUG00000024491) #22	TRAPPC10 (ENSVVUG00000024489) #23	PWP2 (ENSVVUG00000024125) #24	GATD3 (ENSVVUG00000024083) #25	ICOSLG (ENSVVUG00000024076) #26	ENSVVUG00000024071 #27	AIRE (ENSVVUG00000024053) #28	PFKL (ENSVVUG00000024044) #29	CFAP410 (ENSVVUG00000024040) #30	ENSVVUG00000024038 #31	ENSVVUG00000024028 #31	LRRC3 (ENSVVUG00000024026) #32	ENSVVUG00000024023 ##37	ENSVVUG00000023984 ##37	ENSVVUG00000023974 ##37	ENSVVUG00000023958 ##37
Caniformia_b	ANCESTRAL SPECIES		ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977	ENSGT01090000259987.a.a.a
Ursidae	ANCESTRAL SPECIES	1	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a.cb #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000163441.f.b.a.a.b ##37	ENSGT00940000163441.f.b.a.a.a.c ##37	ENSGT00940000161526.a.a	ENSGT00940000158193
Ursus	ANCESTRAL SPECIES	94	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a.cb #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000159292.a #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000163441.f.a.a.b #34	ENSGT00940000161526.a.a	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977
American black bear	MODERN SPECIES	4384																AGPAT3 (ENSUAMG00000016789) #22
Polar bear	MODERN SPECIES	394	UBASH3A (ENSUMAG00000025543)	RSPH1 (ENSUMAG00000025542)	SLC37A1 (ENSUMAG00000025541)	PDE9A (ENSUMAG00000025540) #7	WDR4 (ENSUMAG00000025539) #8	NDUFV3 (ENSUMAG00000025538) #9	PKNOX1 (ENSUMAG00000025537) #10	CBS (ENSUMAG00000025527) #12	U2AF1 (ENSUMAG00000025525) #13	CRYAA (ENSUMAG00000025524) #14	SIK1 (ENSUMAG00000025514) #15	HSF2BP (ENSUMAG00000025511) #16	RRP1B (ENSUMAG00000025510) #18	PDXK (ENSUMAG00000025509) #19	RRP1 (ENSUMAG00000025507) #21	AGPAT3 (ENSUMAG00000025506) #22	TRAPPC10 (ENSUMAG00000025503) #23	PWP2 (ENSUMAG00000025481) #24	GATD3 (ENSUMAG00000025476) #25	ICOSLG (ENSUMAG00000025473) #26	ENSUMAG00000025471 #27	PFKL (ENSUMAG00000025470) #29	ENSUMAG00000025469 #30	TRPM2 (ENSUMAG00000025428) #31	LRRC3 (ENSUMAG00000025427) #32	TSPEAR (ENSUMAG00000025426) #33	ENSUMAG00000025425 ##37	ENSUMAG00000025423 #36	ENSUMAG00000025422	ENSUMAG00000025421	UBE2G2 (ENSUMAG00000025420)
Giant Panda	MODERN SPECIES		UBASH3A (ENSAMEG00000001955)	ENSAMEG00000001940	SLC37A1 (ENSAMEG00000001892)	PDE9A (ENSAMEG00000001848) #7	WDR4 (ENSAMEG00000001823) #8	NDUFV3 (ENSAMEG00000001819) #9	PKNOX1 (ENSAMEG00000001778) #10	ENSAMEG00000001765 #12	ENSAMEG00000000149 #15	HSF2BP (ENSAMEG00000011388) #16	RRP1B (ENSAMEG00000011401) #18	PDXK (ENSAMEG00000011430) #19	CSTB (ENSAMEG00000011447) #20	RRP1 (ENSAMEG00000011448) #21	ENSAMEG00000023579	AGPAT3 (ENSAMEG00000010987) #22	TRAPPC10 (ENSAMEG00000010970) #23	PWP2 (ENSAMEG00000010907) #24	GATD3 (ENSAMEG00000010894) #25	ENSAMEG00000010883 #26	ENSAMEG00000010872 #27	AIRE (ENSAMEG00000010859) #28	PFKL (ENSAMEG00000010751) #29	CFAP410 (ENSAMEG00000010739) #30	TRPM2 (ENSAMEG00000010610) #31	ENSAMEG00000025346 #33	ENSAMEG00000031142 ##37	ENSAMEG00000029366 ##37	ENSAMEG00000028544	ENSAMEG00000031221 ##35	ENSAMEG00000028758 #35
Mustelinae	ANCESTRAL SPECIES	67	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977	ENSGT01090000259987.a.a.a
American mink	MODERN SPECIES	122	RSPH1 (ENSNVIG00000005890)	SLC37A1 (ENSNVIG00000005945)	PDE9A (ENSNVIG00000006007) #7	WDR4 (ENSNVIG00000006026) #8	ENSNVIG00000006056 #9	PKNX1 (ENSNVIG00000006069) #10	CBS (ENSNVIG00000006101) #12	U2AF1 (ENSNVIG00000006310) #13	CRYAA (ENSNVIG00000006345) #14	SIK1 (ENSNVIG00000006387) #15	HSF2BP (ENSNVIG00000006866) #16	RRP1B (ENSNVIG00000006928) #18	PDXK (ENSNVIG00000006971) #19	CSTB (ENSNVIG00000007044) #20	RRP1 (ENSNVIG00000007054) #21	AGPAT3 (ENSNVIG00000007070) #22	TRAPPC10 (ENSNVIG00000007089) #23	PWP2 (ENSNVIG00000007096) #24	GATD3 (ENSNVIG00000007184) #25	ICOSLG (ENSNVIG00000007190) #26	ENSNVIG00000007199 #27	AIRE (ENSNVIG00000007211) #28	PFKL (ENSNVIG00000007397) #29	ENSNVIG00000007455 #30	TRPM2 (ENSNVIG00000007475) #31	LRRC3 (ENSNVIG00000007665) #32	TSPEAR (ENSNVIG00000007674) #33	ENSNVIG00000007725	ENSNVIG00000007773 ##37	ENSNVIG00000007785	UBE2G2 (ENSNVIG00000007799)
Ferret	MODERN SPECIES	248	PDE9A (ENSMPUG00000009433) #7	WDR4 (ENSMPUG00000009605) #8	ENSMPUG00000009667 #9	PKNOX1 (ENSMPUG00000009673) #10	CBS (ENSMPUG00000009689) #12	U2AF1 (ENSMPUG00000009706) #13	CRYAA (ENSMPUG00000009713) #14	SIK1 (ENSMPUG00000009719) #15	ENSMPUG00000009768	HSF2BP (ENSMPUG00000009772) #16	RRP1B (ENSMPUG00000009810) #18	ENSMPUG00000019064	CSTB (ENSMPUG00000009819) #20	RRP1 (ENSMPUG00000009826) #21	ENSMPUG00000019065	AGPAT3 (ENSMPUG00000009918) #22	TRAPPC10 (ENSMPUG00000009927) #23	PWP2 (ENSMPUG00000009936) #24	GATD3 (ENSMPUG00000009943) #25	ICOSLG (ENSMPUG00000009996) #26	DNMT3L (ENSMPUG00000010003) #27	ENSMPUG00000010029	AIRE (ENSMPUG00000010031) #28	PFKL (ENSMPUG00000010091) #29	CFAP410 (ENSMPUG00000010108) #30	TRPM2 (ENSMPUG00000010155) #31	LRRC3 (ENSMPUG00000019066) #32	TSPEAR (ENSMPUG00000010176) #33	ENSMPUG00000019067	UBE2G2 (ENSMPUG00000010187)	ENSMPUG00000010234
Felidae	ANCESTRAL SPECIES	9	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000163441.f.b.a.a.c ##37	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977
Panthera	ANCESTRAL SPECIES	17	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000163441.f.b.a.a.c ##37	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977
Panthera_a	ANCESTRAL SPECIES	63	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33
lion	MODERN SPECIES	148															RRP1 (ENSPLOG00000017909) #21	AGPAT3 (ENSPLOG00000018245) #22	TRAPPC10 (ENSPLOG00000018286) #23	PWP2 (ENSPLOG00000018391) #24	ENSPLOG00000018453 #25	ENSPLOG00000018616 #26	DNMT3L (ENSPLOG00000018643) #27	AIRE (ENSPLOG00000018848) #28	PFKL (ENSPLOG00000018958) #29	CFAP410 (ENSPLOG00000019187) #30	TRPM2 (ENSPLOG00000019220) #31	LRRC3 (ENSPLOG00000019285) #32
leopard	MODERN SPECIES	148	RSPH1 (ENSPPRG00000008318)	SLC37A1 (ENSPPRG00000008368)	PDE9A (ENSPPRG00000008728) #7	WDR4 (ENSPPRG00000008824) #8	ENSPPRG00000008831 #9	PKNOX1 (ENSPPRG00000008876) #10	CBS (ENSPPRG00000009520) #12	U2AF1 (ENSPPRG00000009721) #13	CRYAA (ENSPPRG00000009838) #14	SIK1 (ENSPPRG00000010102) #15	HSF2BP (ENSPPRG00000010297) #16	RRP1B (ENSPPRG00000010356) #18	PDXK (ENSPPRG00000010569) #19	CSTB (ENSPPRG00000010619) #20	RRP1 (ENSPPRG00000010656) #21	AGPAT3 (ENSPPRG00000010943) #22	TRAPPC10 (ENSPPRG00000010959) #23	PWP2 (ENSPPRG00000011088) #24	GATD3 (ENSPPRG00000011216) #25	ICOSLG (ENSPPRG00000011258) #26	DNMT3L (ENSPPRG00000011340) #27	AIRE (ENSPPRG00000011376) #28	PFKL (ENSPPRG00000011485) #29	CFAP410 (ENSPPRG00000011592) #30	TRPM2 (ENSPPRG00000011778) #31	LRRC3 (ENSPPRG00000012330) #32	TSPEAR (ENSPPRG00000011892) #33
Cat	MODERN SPECIES	240	RSPH1 (ENSFCAG00000012707)	SLC37A1 (ENSFCAG00000012708)	PDE9A (ENSFCAG00000003965) #7	WDR4 (ENSFCAG00000003966) #8	NDUFV3 (ENSFCAG00000046775) #9	PKNOX1 (ENSFCAG00000042914) #10	CBS (ENSFCAG00000003969) #12	U2AF1 (ENSFCAG00000003970) #13	CRYAA (ENSFCAG00000000224) #14	SIK1 (ENSFCAG00000000225) #15	HSF2BP (ENSFCAG00000043141) #16	RRP1B (ENSFCAG00000010272) #18	PDXK (ENSFCAG00000008432) #19	ENSFCAG00000040822 #20	RRP1 (ENSFCAG00000008434) #21	AGPAT3 (ENSFCAG00000008438) #22	TRAPPC10 (ENSFCAG00000008440) #23	PWP2 (ENSFCAG00000004487) #24	ENSFCAG00000011959 #25	ENSFCAG00000048289	ICOSLG (ENSFCAG00000006687) #26	ENSFCAG00000000739 #27	AIRE (ENSFCAG00000007933) #28	PFKL (ENSFCAG00000003311) #29	CFAP410 (ENSFCAG00000040115) #30	TRPM2 (ENSFCAG00000009173) #31	LRRC3 (ENSFCAG00000009174) #32	ENSFCAG00000037433 ##37	ENSFCAG00000034182 #34	ENSFCAG00000046465 #36	ENSFCAG00000037983 ##37
Laurasiatheria_c	ANCESTRAL SPECIES	2	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00940000163845	ENSGT00510000047718 #33	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977
Chiroptera	ANCESTRAL SPECIES	35	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000163441.f.b.b ##37	ENSGT00940000163441.f.a.a.b #34	ENSGT00940000158193	ENSGT00950000182895.a.b.j
Megabat	MODERN SPECIES	1683																AGPAT3 (ENSPVAG00000002310) #22	TRAPPC10 (ENSPVAG00000002311) #23	PWP2 (ENSPVAG00000002312) #24	GATD3 (ENSPVAG00000002313) #25
Microchiroptera	ANCESTRAL SPECIES	37	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000163441.f.b.b ##37	ENSGT00940000163441.f.a.a.b #34	ENSGT00940000158193	ENSGT00950000182895.a.b.j
Microbat	MODERN SPECIES	1228													ENSMLUG00000030154	ENSMLUG00000022457 #20	RRP1 (ENSMLUG00000017788) #21	AGPAT3 (ENSMLUG00000004785) #22	TRAPPC10 (ENSMLUG00000004810) #23	PWP2 (ENSMLUG00000004823) #24	GATD3 (ENSMLUG00000004837) #25	DNMT3L (ENSMLUG00000013954) #27	ENSMLUG00000010968 #28	PFKL (ENSMLUG00000010992) #29	CFAP410 (ENSMLUG00000011059) #30	TRPM2 (ENSMLUG00000011096) #31	LRRC3 (ENSMLUG00000011171) #32	TSPEAR (ENSMLUG00000011225) #33	ENSMLUG00000017019 ##37	ENSMLUG00000010897 ##37	ENSMLUG00000011524 #34	UBE2G2 (ENSMLUG00000011264)	ENSMLUG00000028601
Greater horseshoe bat	MODERN SPECIES	11	RSPH1 (ENSRFEG00010004627)	SLC37A1 (ENSRFEG00010004677)	PDE9A (ENSRFEG00010004823) #7	WDR4 (ENSRFEG00010004938) #8	NDUFV3 (ENSRFEG00010004952) #9	PKNOX1 (ENSRFEG00010000147) #10	CBS (ENSRFEG00010000170) #12	U2AF1 (ENSRFEG00010000191) #13	CRYAA (ENSRFEG00010000206) #14	SIK1 (ENSRFEG00010000222) #15	HSF2BP (ENSRFEG00010000255) #16	RRP1B (ENSRFEG00010000288) #18	PDXK (ENSRFEG00010000337) #19	CSTB (ENSRFEG00010000380) #20	RRP1 (ENSRFEG00010000411) #21	AGPAT3 (ENSRFEG00010000500) #22	TRAPPC10 (ENSRFEG00010000559) #23	PWP2 (ENSRFEG00010000602) #24	GATD3 (ENSRFEG00010000628) #25	ICOSLG (ENSRFEG00010000645) #26	DNMT3L (ENSRFEG00010000669) #27	AIRE (ENSRFEG00010000735) #28	PFKL (ENSRFEG00010000776) #29	CFAP410 (ENSRFEG00010000827) #30	TRPM2 (ENSRFEG00010000872) #31	LRRC3 (ENSRFEG00010000940) #32	TSPEAR (ENSRFEG00010000980) #33	ENSRFEG00010001026	ENSRFEG00010001114 #34	ENSRFEG00010001158	UBE2G2 (ENSRFEG00010001187)
Equus	ANCESTRAL SPECIES	42	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027.h #12	ENSGT00950000183152.B.c.a #13	ENSGT00510000047027.g #12	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826.xb #20	ENSGT00940000154826.yb #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00940000163845	ENSGT00510000047718 #33	ENSGT00940000158193	ENSGT00950000182895.a.b.j
Horse	MODERN SPECIES	18	PDE9A (ENSECAG00000017519) #7	WDR4 (ENSECAG00000019212) #8	NDUFV3 (ENSECAG00000003055) #9	PKNOX1 (ENSECAG00000010284) #10	ENSECAG00000046444	ENSECAG00000022794 #12	U2AF1 (ENSECAG00000015558) #13	ENSECAG00000021749 #12	SIK1 (ENSECAG00000006288) #15	HSF2BP (ENSECAG00000017282) #16	RRP1B (ENSECAG00000018018) #18	PDXK (ENSECAG00000022301) #19	ENSECAG00000034000 #20	ENSECAG00000032188 #20	RRP1 (ENSECAG00000015703) #21	AGPAT3 (ENSECAG00000022861) #22	TRAPPC10 (ENSECAG00000015123) #23	PWP2 (ENSECAG00000006090) #24	ENSECAG00000051827 #26	DNMT3L (ENSECAG00000009690) #27	AIRE (ENSECAG00000012924) #28	PFKL (ENSECAG00000017863) #29	TRPM2 (ENSECAG00000023430) #31	TSPEAR (ENSECAG00000008057) #30	LRRC3 (ENSECAG00000005082) #32	TSPEAR (ENSECAG00000051756) #33	ENSECAG00000029396	ENSECAG00000051909	ENSECAG00000051879	ENSECAG00000015117	ENSECAG00000047135
Donkey	MODERN SPECIES	9	WDR4 (ENSEASG00005003766) #8	NDUFV3 (ENSEASG00005003763) #9	ENSEASG00005038023 #12	ENSEASG00005038681	PKNOX1 (ENSEASG00005003760) #10	ENSEASG00005001773 #13	ENSEASG00005034585 #12	ENSEASG00005037746 #14	SIK1 (ENSEASG00005001719) #15	HSF2BP (ENSEASG00005001700) #16	RRP1B (ENSEASG00005001687) #18	PDXK (ENSEASG00005001679) #19	ENSEASG00005030216 #20	ENSEASG00005032279 #20	RRP1 (ENSEASG00005001673) #21	AGPAT3 (ENSEASG00005001667) #22	ENSEASG00005001663	TRAPPC10 (ENSEASG00005001657) #23	PWP2 (ENSEASG00005001651) #24	GATD3 (ENSEASG00005001648) #25	ENSEASG00005001644 #26	DNMT3L (ENSEASG00005001632) #27	AIRE (ENSEASG00005001620) #28	PFKL (ENSEASG00005001615) #29	CFAP410 (ENSEASG00005001598) #30	TRPM2 (ENSEASG00005000375) #31	ENSEASG00005035707 #32	ENSEASG00005033364	ENSEASG00005026527	ENSEASG00005037300	ENSEASG00005014722
Artiodactyla	ANCESTRAL SPECIES	2	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT01020000234487	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977	ENSGT01090000259987.a.a.a
Artiodactyla_a	ANCESTRAL SPECIES	8	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977	ENSGT01090000259987.a.a.a
Artiodactyla_b	ANCESTRAL SPECIES	6	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977	ENSGT01090000259987.a.a.a
Cetacea	ANCESTRAL SPECIES	10	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196.a #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874.k #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977	ENSGT01090000259987.a.a.a
Odontoceti	ANCESTRAL SPECIES	9	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196.a #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874.k #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977	ENSGT01090000259987.a.a.a
Odontoceti_a	ANCESTRAL SPECIES	8	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196.a #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874.k #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977	ENSGT01090000259987.a.a.a
Odontoceti_b	ANCESTRAL SPECIES	9	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196.a #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874.k #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977	ENSGT01090000259987.a.a.a
Monodontidae	ANCESTRAL SPECIES	11	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196.a #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00940000163089.a.b	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874.k #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977	ENSGT01090000259987.a.a.a
Beluga whale	MODERN SPECIES	111	SLC37A1 (ENSDLEG00000021092)	PDE9A (ENSDLEG00000021086) #7	WDR4 (ENSDLEG00000021081) #8	NDUFV3 (ENSDLEG00000021078) #9	PKNOX1 (ENSDLEG00000021076) #10	CBS (ENSDLEG00000021070) #12	U2AF1 (ENSDLEG00000021062) #13	CRYAA (ENSDLEG00000021056) #14	SIK1 (ENSDLEG00000021047) #15	ENSDLEG00000021045	HSF2BP (ENSDLEG00000021043) #16	RRP1B (ENSDLEG00000021037) #18	PDXK (ENSDLEG00000021031) #19	CSTB (ENSDLEG00000021029) #20	RRP1 (ENSDLEG00000021024) #21	AGPAT3 (ENSDLEG00000021021) #22	TRAPPC10 (ENSDLEG00000021015) #23	PWP2 (ENSDLEG00000021005) #24	GATD3 (ENSDLEG00000021000) #25	ICOSLG (ENSDLEG00000020998) #26	ENSDLEG00000020995 #27	AIRE (ENSDLEG00000020961) #28	PFKL (ENSDLEG00000020945) #29	CUNH21orf2 (ENSDLEG00000020939) #30	TRPM2 (ENSDLEG00000020923) #31	LRRC3 (ENSDLEG00000020917) #32	TSPEAR (ENSDLEG00000020913) #33	UBE2G2 (ENSDLEG00000020904)	ENSDLEG00000020900	PTTG1IP (ENSDLEG00000020895)	ITGB2 (ENSDLEG00000020885)
Narwhal	MODERN SPECIES	297	SLC37A1 (ENSMMNG00015002910)	PDE9A (ENSMMNG00015002827) #7	WDR4 (ENSMMNG00015002775) #8	NDUFV3 (ENSMMNG00015002750) #9	PKNOX1 (ENSMMNG00015002718) #10	CBS (ENSMMNG00015002675) #12	U2AF1 (ENSMMNG00015002628) #13	CRYAA (ENSMMNG00015002603) #14	SIK1 (ENSMMNG00015002567) #15	ENSMMNG00015002545	HSF2BP (ENSMMNG00015002511) #16	RRP1B (ENSMMNG00015002462) #18	PDXK (ENSMMNG00015002424) #19	CSTB (ENSMMNG00015002400) #20	RRP1 (ENSMMNG00015002366) #21	AGPAT3 (ENSMMNG00015002330) #22	TRAPPC10 (ENSMMNG00015002229) #23	PWP2 (ENSMMNG00015002118) #24	ENSMMNG00015002030 #25	ICOSLG (ENSMMNG00015001974) #26	DNMT3L (ENSMMNG00015001913) #27	AIRE (ENSMMNG00015001730) #28	PFKL (ENSMMNG00015001526) #29	CFAP410 (ENSMMNG00015001497) #30	TRPM2 (ENSMMNG00015001381) #31	TSPEAR (ENSMMNG00015001273) #33	UBE2G2 (ENSMMNG00015001235)	SUMO3 (ENSMMNG00015001196)	PTTG1IP (ENSMMNG00015001159)	ITGB2 (ENSMMNG00015001076)	SLX9 (ENSMMNG00015001036)
Vaquita	MODERN SPECIES	15	RSPH1 (ENSPSNG00000004899)	SLC37A1 (ENSPSNG00000004936)	PDE9A (ENSPSNG00000005243) #7	WDR4 (ENSPSNG00000005893) #8	NDUFV3 (ENSPSNG00000005932) #9	PKNOX1 (ENSPSNG00000006002) #10	CBS (ENSPSNG00000009906) #12	U2AF1 (ENSPSNG00000010054) #13	CRYAA (ENSPSNG00000010191) #14	SIK1 (ENSPSNG00000010236) #15	HSF2BP (ENSPSNG00000010294) #16	RRP1B (ENSPSNG00000010341) #18	ENSPSNG00000010404 #19	ENSPSNG00000010486 #20	RRP1 (ENSPSNG00000010522) #21	AGPAT3 (ENSPSNG00000010576) #22	TRAPPC10 (ENSPSNG00000010640) #23	PWP2 (ENSPSNG00000010734) #24	GATD3 (ENSPSNG00000010801) #25	ICOSLG (ENSPSNG00000010983) #26	DNMT3L (ENSPSNG00000011244) #27	AIRE (ENSPSNG00000011555) #28	PFKL (ENSPSNG00000012080) #29	CFAP410 (ENSPSNG00000012160) #30	TRPM2 (ENSPSNG00000012233) #31	LRRC3 (ENSPSNG00000012828) #32	TSPEAR (ENSPSNG00000012864) #33	UBE2G2 (ENSPSNG00000013185)	SUMO3 (ENSPSNG00000013255)	PTTG1IP (ENSPSNG00000013293)	ENSPSNG00000013374
Dolphin	MODERN SPECIES	1327													PDXK (ENSTTRG00000011152) #19	CSTB (ENSTTRG00000011158) #20	RRP1 (ENSTTRG00000011162) #21	AGPAT3 (ENSTTRG00000011171) #22
Sperm whale	MODERN SPECIES	19	TMPRSS3 (ENSPCTG00005008050)	UBASH3A (ENSPCTG00005008150)	RSPH1 (ENSPCTG00005008271)	SLC37A1 (ENSPCTG00005008374)	CBS (ENSPCTG00005008728) #12	PKNOX1 (ENSPCTG00005012441) #10	NDUFV3 (ENSPCTG00005012543) #9	WDR4 (ENSPCTG00005012622) #8	PDE9A (ENSPCTG00005012834) #7	HSF2BP (ENSPCTG00005014642) #16	RRP1B (ENSPCTG00005014769) #18	PDXK (ENSPCTG00005014904) #19	CSTB (ENSPCTG00005015015) #20	U2AF1 (ENSPCTG00005015178) #13	CRYAA (ENSPCTG00005015249) #14	AGPAT3 (ENSPCTG00005015313) #22	TRAPPC10 (ENSPCTG00005015440) #23	PWP2 (ENSPCTG00005015641) #24	GATD3A (ENSPCTG00005015921) #25	ICOSLG (ENSPCTG00005016088) #26	DNMT3L (ENSPCTG00005016240) #27	AIRE (ENSPCTG00005016581) #28	PFKL (ENSPCTG00005017230) #29	SUMO3 (ENSPCTG00005017367)	UBE2G2 (ENSPCTG00005017422)	TSPEAR (ENSPCTG00005017485) #33	ENSPCTG00005017543	ENSPCTG00005017608 #36	LRRC3 (ENSPCTG00005017660) #32	ENSPCTG00005017676 #31	ENSPCTG00005017771 #31
Blue whale	MODERN SPECIES	15	PDE9A (ENSBMSG00010006135) #7	WDR4 (ENSBMSG00010006556) #8	ENSBMSG00010006574 #9	PKNOX1 (ENSBMSG00010006599) #10	ENSBMSG00010006616	CBS (ENSBMSG00010006633) #12	U2AF1 (ENSBMSG00010006667) #13	CRYAA (ENSBMSG00010006694) #14	SIK1 (ENSBMSG00010006706) #15	HSF2BP (ENSBMSG00010006728) #16	ENSBMSG00010006743	RRP1B (ENSBMSG00010006765) #18	ENSBMSG00010006807 #19	ENSBMSG00010006834 #20	RRP1 (ENSBMSG00010006842) #21	AGPAT3 (ENSBMSG00010006864) #22	TRAPPC10 (ENSBMSG00010006876) #23	PWP2 (ENSBMSG00010006911) #24	GATD3 (ENSBMSG00010006949) #25	ICOSLG (ENSBMSG00010006991) #26	DNMT3L (ENSBMSG00010007028) #27	AIRE (ENSBMSG00010007103) #28	PFKL (ENSBMSG00010007189) #29	CFAP410 (ENSBMSG00010007203) #30	TRPM2 (ENSBMSG00010007233) #31	LRRC3 (ENSBMSG00010007273) #32	TSPEAR (ENSBMSG00010007281) #33	ENSBMSG00010007295	ENSBMSG00010007310 ##37	ENSBMSG00010007332	UBE2G2 (ENSBMSG00010007343)
Pecora	ANCESTRAL SPECIES	8	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826.rb.b #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT01100000265026	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977
Percora_a	ANCESTRAL SPECIES	7	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826.rb.b #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT01100000265026	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977
Bovidae	ANCESTRAL SPECIES	9	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826.rb.b #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT01100000265026	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977
Caprinae	ANCESTRAL SPECIES	8	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826.rb.b #20	ENSGT00940000154826.rb.a.a #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00510000047493.n	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000163441.f.a.b.c.a.b.a.a.a.a ##37	ENSGT00940000163441.f.a.b.c.a.b.a.b.a.b.b ##37	ENSGT00940000163441.f.b.b.c.b ##37
Goat	MODERN SPECIES		WDR4 (ENSCHIG00000022834) #8	ENSCHIG00000025996 #9	PKNOX1 (ENSCHIG00000019819) #10	CBS (ENSCHIG00000010679) #12	U2AF1 (ENSCHIG00000012917) #13	CRYAA (ENSCHIG00000025002) #14	SIK1 (ENSCHIG00000013044) #15	ENSCHIG00000019627	HSF2BP (ENSCHIG00000005444) #16	RRP1B (ENSCHIG00000021519) #18	PDXK (ENSCHIG00000008616) #19	ENSCHIG00000023504 #20	ENSCHIG00000018248 #20	RRP1 (ENSCHIG00000020948) #21	ENSCHIG00000024677	AGPAT3 (ENSCHIG00000018991) #22	TRAPPC10 (ENSCHIG00000027168) #23	PWP2 (ENSCHIG00000026362) #24	GATD3 (ENSCHIG00000012627) #25	ICOSLG (ENSCHIG00000013703) #26	DNMT3L (ENSCHIG00000026242) #27	AIRE (ENSCHIG00000017506) #28	ENSCHIG00000023257	CFAP410 (ENSCHIG00000026049) #30	ENSCHIG00000009692	TRPM2 (ENSCHIG00000017585) #31	LRRC3 (ENSCHIG00000009418) #32	TSPEAR (ENSCHIG00000017708) #33	ENSCHIG00000011548 ##37	ENSCHIG00000014533 ##37	ENSCHIG00000017373 ##37
Rambouillet Sheep	MODERN SPECIES		UBASH3A (ENSOARG00020003453)	RSPH1 (ENSOARG00020003566)	SLC37A1 (ENSOARG00020003631)	PDE9A (ENSOARG00020003783) #7	WDR4 (ENSOARG00020005224) #8	NDUFV3 (ENSOARG00020005254) #9	PKNOX1 (ENSOARG00020005292) #10	CBS (ENSOARG00020005385) #12	U2AF1 (ENSOARG00020005608) #13	CRYAA (ENSOARG00020005666) #14	SIK1 (ENSOARG00020005689) #15	HSF2BP (ENSOARG00020005745) #16	PDXK (ENSOARG00020005802) #19	CSTB (ENSOARG00020005932) #20	RRP1 (ENSOARG00020005964) #21	AGPAT3 (ENSOARG00020005985) #22	ENSOARG00020006019	TRAPPC10 (ENSOARG00020006030) #23	PWP2 (ENSOARG00020006076) #24	GATD3A (ENSOARG00020006120) #25	ICOSLG (ENSOARG00020006191) #26	DNMT3L (ENSOARG00020006260) #27	AIRE (ENSOARG00020006405) #28	PFKL (ENSOARG00020006870) #29	CFAP410 (ENSOARG00020014376) #30	ENSOARG00020014423	TRPM2 (ENSOARG00020014481) #31	LRRC3 (ENSOARG00020014996) #32	TSPEAR (ENSOARG00020015029) #33	ENSOARG00020015156 ##37	ENSOARG00020006471 ##37
Bovinae	ANCESTRAL SPECIES	6	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826.rb.b #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT01100000265026	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977
Bos	ANCESTRAL SPECIES	7	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826.rb.b #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT01100000265026	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000163441.f.a.b.c.a.b.a.b.a.b.a.b ##37	ENSGT00940000163441.f.a.b.d ##37	ENSGT00940000158193
Bos_a	ANCESTRAL SPECIES	5	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826.rb.b #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT01100000265026	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000163441.f.a.b.c.a.b.a.b.a.b.a.b ##37	ENSGT00940000163441.f.a.b.c.b ##37	ENSGT00960000187239.a
Domestic yak	MODERN SPECIES		RSPH1 (ENSBGRG00000018504)	SLC37A1 (ENSBGRG00000018757)	PDE9A (ENSBGRG00000019109) #7	WDR4 (ENSBGRG00000019836) #8	ENSBGRG00000019941 #9	PKNOX1 (ENSBGRG00000020052) #10	CBS (ENSBGRG00000020259) #12	U2AF1 (ENSBGRG00000020541) #13	CRYAA (ENSBGRG00000020662) #14	SIK1 (ENSBGRG00000020700) #15	HSF2BP (ENSBGRG00000020817) #16	RRP1B (ENSBGRG00000021030) #18	PDXK (ENSBGRG00000021296) #19	ENSBGRG00000021603 #20	RRP1 (ENSBGRG00000021680) #21	AGPAT3 (ENSBGRG00000021804) #22	TRAPPC10 (ENSBGRG00000021882) #23	PWP2 (ENSBGRG00000022101) #24	ENSBGRG00000022271 #25	ICOSLG (ENSBGRG00000022358) #26	DNMT3L (ENSBGRG00000022411) #27	AIRE (ENSBGRG00000022599) #28	ENSBGRG00000022818	PFKL (ENSBGRG00000022853) #29	CFAP410 (ENSBGRG00000023037) #30	TRPM2 (ENSBGRG00000023076) #31	LRRC3 (ENSBGRG00000023411) #32	TSPEAR (ENSBGRG00000023436) #33	ENSBGRG00000023540 ##37	ENSBGRG00000023556 ##37	ENSBGRG00000023571 ##37
Wild yak	MODERN SPECIES	2112	RSPH1 (ENSBMUG00000012341)	SLC37A1 (ENSBMUG00000012379)	PDE9A (ENSBMUG00000012397) #7	WDR4 (ENSBMUG00000012436) #8	ENSBMUG00000012491 #9	PKNOX1 (ENSBMUG00000012508) #10	CBS (ENSBMUG00000012649) #12	U2AF1 (ENSBMUG00000012755) #13	CRYAA (ENSBMUG00000012764) #14	SIK1 (ENSBMUG00000012772) #15	HSF2BP (ENSBMUG00000012808) #16	RRP1B (ENSBMUG00000012932) #18	PDXK (ENSBMUG00000013006) #19	ENSBMUG00000013071 #20	RRP1 (ENSBMUG00000013086) #21	AGPAT3 (ENSBMUG00000013195) #22	TRAPPC10 (ENSBMUG00000013261) #23	PWP2 (ENSBMUG00000013296) #24	GATD3 (ENSBMUG00000013327) #25	ENSBMUG00000013354 #26	DNMT3L (ENSBMUG00000013391) #27	ENSBMUG00000013414	AIRE (ENSBMUG00000013435) #28	PFKL (ENSBMUG00000013472) #29	CFAP410 (ENSBMUG00000013489) #30	TRPM2 (ENSBMUG00000013655) #31	LRRC3 (ENSBMUG00000013743) #32
Bos_b	ANCESTRAL SPECIES	5	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826.rb.b #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT01100000265026	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000163441.f.b.b.c.a ##37	ENSGT00940000163441.f.a.b.c.a.b.a.b.a.b.b ##37	ENSGT00940000163441.f.b.b.c.b ##37
Hybrid Bos Indicus	MODERN SPECIES		ENSBIXG00005021172	WDR4 (ENSBIXG00005007357) #8	ENSBIXG00005003567 #9	ENSBIXG00005021053	PKNOX1 (ENSBIXG00005021038) #10	CBS (ENSBIXG00005020947) #12	U2AF1 (ENSBIXG00005020822) #13	CRYAA (ENSBIXG00005020745) #14	ENSBIXG00005020712	SIK1 (ENSBIXG00005003495) #15	HSF2BP (ENSBIXG00005020613) #16	RRP1B (ENSBIXG00005020578) #18	PDXK (ENSBIXG00005020496) #19	ENSBIXG00005020433 #20	RRP1 (ENSBIXG00005020372) #21	AGPAT3 (ENSBIXG00005020333) #22	TRAPPC10 (ENSBIXG00005003407) #23	PWP2 (ENSBIXG00005003368) #24	ENSBIXG00005020156 #25	ICOSLG (ENSBIXG00005003278) #26	DNMT3L (ENSBIXG00005003270) #27	AIRE (ENSBIXG00005019950) #28	ENSBIXG00005019827	PFKL (ENSBIXG00005000029) #29	CFAP410 (ENSBIXG00005019772) #30	TRPM2 (ENSBIXG00005003229) #31	LRRC3 (ENSBIXG00005019626) #32	TSPEAR (ENSBIXG00005006878) #33	ENSBIXG00005019546 ##37	ENSBIXG00005019524 ##37	ENSBIXG00005019504 ##37
Cow	MODERN SPECIES		SLC37A1 (ENSBTAG00000021286)	PDE9A (ENSBTAG00000021899) #7	WDR4 (ENSBTAG00000021490) #8	NDUFV3 (ENSBTAG00000021491) #9	PKNOX1 (ENSBTAG00000014153) #10	CBS (ENSBTAG00000000160) #12	U2AF1 (ENSBTAG00000011645) #13	CRYAA (ENSBTAG00000003134) #14	SIK1 (ENSBTAG00000011437) #15	HSF2BP (ENSBTAG00000017407) #16	RRP1B (ENSBTAG00000017418) #18	PDXK (ENSBTAG00000018186) #19	CSTB (ENSBTAG00000018189) #20	CSTB (ENSBTAG00000000524) #20	RRP1 (ENSBTAG00000003981) #21	AGPAT3 (ENSBTAG00000020456) #22	TRAPPC10 (ENSBTAG00000007100) #23	PWP2 (ENSBTAG00000007105) #24	GATD3 (ENSBTAG00000007106) #25	ICOSLG (ENSBTAG00000014880) #26	DNMT3L (ENSBTAG00000014882) #27	AIRE (ENSBTAG00000023393) #28	ENSBTAG00000051579	PFKL (ENSBTAG00000010658) #29	CFAP410 (ENSBTAG00000019589) #30	TRPM2 (ENSBTAG00000021901) #31	LRRC3 (ENSBTAG00000017882) #32	TSPEAR (ENSBTAG00000018607) #33	ENSBTAG00000051900 ##37	ENSBTAG00000037662 ##37	ENSBTAG00000052773 ##37
American bison	MODERN SPECIES	2975	RSPH1 (ENSBBBG00000007983)	SLC37A1 (ENSBBBG00000014169)	PDE9A (ENSBBBG00000014410) #7	WDR4 (ENSBBBG00000014454) #8	NDUFV3 (ENSBBBG00000014463) #9	PKNOX1 (ENSBBBG00000003350) #10	CBS (ENSBBBG00000014597) #12	U2AF1 (ENSBBBG00000014640) #13	CRYAA (ENSBBBG00000014669) #14	SIK1 (ENSBBBG00000002847) #15	HSF2BP (ENSBBBG00000014691) #16	RRP1B (ENSBBBG00000003568) #18	PDXK (ENSBBBG00000003579) #19	CSTB (ENSBBBG00000007657) #20	RRP1 (ENSBBBG00000014788) #21	AGPAT3 (ENSBBBG00000003650) #22	TRAPPC10 (ENSBBBG00000007658) #23	PWP2 (ENSBBBG00000002805) #24	GATD3 (ENSBBBG00000014917) #25	ICOSLG (ENSBBBG00000001169) #26	DNMT3L (ENSBBBG00000001124) #27	AIRE (ENSBBBG00000000900) #28	PFKL (ENSBBBG00000000844) #29	CFAP410 (ENSBBBG00000000830) #30	TRPM2 (ENSBBBG00000015032) #31	LRRC3 (ENSBBBG00000003736) #32	ENSBBBG00000015050 ##37	ENSBBBG00000015056 ##37	ENSBBBG00000015061 ##37	ENSBBBG00000015080 ##37	ENSBBBG00000015083 ##37
Siberian musk deer	MODERN SPECIES	1185	SLC37A1 (ENSMMSG00000010340)	PDE9A (ENSMMSG00000010433) #7	ENSMMSG00000010748	WDR4 (ENSMMSG00000010788) #8	NDUFV3 (ENSMMSG00000010825) #9	PKNOX1 (ENSMMSG00000010868) #10	CBS (ENSMMSG00000010935) #12	U2AF1 (ENSMMSG00000011040) #13	CRYAA (ENSMMSG00000011127) #14	SIK1 (ENSMMSG00000011154) #15	HSF2BP (ENSMMSG00000011223) #16	RRP1B (ENSMMSG00000011269) #18	PDXK (ENSMMSG00000011339) #19	CSTB (ENSMMSG00000011422) #20	RRP1 (ENSMMSG00000011447) #21	AGPAT3 (ENSMMSG00000011502) #22	TRAPPC10 (ENSMMSG00000011550) #23	PWP2 (ENSMMSG00000011700) #24	GATD3 (ENSMMSG00000011811) #25	DNMT3L (ENSMMSG00000011908) #27	ENSMMSG00000012064	AIRE (ENSMMSG00000012088) #28	PFKL (ENSMMSG00000012144) #29	CFAP410 (ENSMMSG00000012203) #30	TRPM2 (ENSMMSG00000012263) #31	LRRC3 (ENSMMSG00000012592) #32	TSPEAR (ENSMMSG00000012606) #33	ENSMMSG00000012645 ##37	ENSMMSG00000012659 ##37	ENSMMSG00000012695	ENSMMSG00000012713
Yarkand deer	MODERN SPECIES	10	RSPH1 (ENSCHYG00000008397)	SLC37A1 (ENSCHYG00000008438)	PDE9A (ENSCHYG00000008513) #7	WDR4 (ENSCHYG00000008871) #8	NDUFV3 (ENSCHYG00000008999) #9	PKNOX1 (ENSCHYG00000009096) #10	CBS (ENSCHYG00000009317) #12	ENSCHYG00000009600 #13	CRYAA (ENSCHYG00000009789) #14	SIK1 (ENSCHYG00000009832) #15	HSF2BP (ENSCHYG00000009993) #16	RRP1B (ENSCHYG00000010070) #18	PDXK (ENSCHYG00000010189) #19	ENSCHYG00000010380 #20	RRP1 (ENSCHYG00000010447) #21	AGPAT3 (ENSCHYG00000010566) #22	TRAPPC10 (ENSCHYG00000010651) #23	PWP2 (ENSCHYG00000010992) #24	GATD3 (ENSCHYG00000011221) #25	ENSCHYG00000011375 #26	DNMT3L (ENSCHYG00000011454) #27	AIRE (ENSCHYG00000011590) #28	ENSCHYG00000011682	PFKL (ENSCHYG00000011737) #29	ENSCHYG00000012006 #30	TRPM2 (ENSCHYG00000012131) #31	LRRC3 (ENSCHYG00000012591) #32	TSPEAR (ENSCHYG00000012613) #33	ENSCHYG00000012689	ENSCHYG00000012727 ##37	ENSCHYG00000012743 ##37
Camelidae	ANCESTRAL SPECIES		ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000163441.f.a.a.b #34	ENSGT00940000163441.f.a.b.c.a.a ##37	ENSGT00940000158193	ENSGT00950000182895.a.a.a.b.f
Arabian camel	MODERN SPECIES		SLC37A1 (ENSCDRG00005011351)	PDE9A (ENSCDRG00005011646) #7	WDR4 (ENSCDRG00005012149) #8	ENSCDRG00005012280 #9	PKNOX1 (ENSCDRG00005012370) #10	CBS (ENSCDRG00005012447) #12	U2AF1 (ENSCDRG00005012625) #13	CRYAA (ENSCDRG00005012871) #14	SIK1 (ENSCDRG00005012900) #15	HSF2BP (ENSCDRG00005013018) #16	RRP1B (ENSCDRG00005013083) #18	PDXK (ENSCDRG00005013153) #19	ENSCDRG00005013250 #20	RRP1 (ENSCDRG00005013286) #21	ENSCDRG00005013354	AGPAT3 (ENSCDRG00005013408) #22	TRAPPC10 (ENSCDRG00005013577) #23	PWP2 (ENSCDRG00005013718) #24	GATD3 (ENSCDRG00005013830) #25	ENSCDRG00005014322 #26	DNMT3L (ENSCDRG00005014446) #27	AIRE (ENSCDRG00005014671) #28	PFKL (ENSCDRG00005015587) #29	CFAP410 (ENSCDRG00005021870) #30	TRPM2 (ENSCDRG00005021872) #31	LRRC3 (ENSCDRG00005021874) #32	TSPEAR (ENSCDRG00005021875) #33	ENSCDRG00005021877 #34	ENSCDRG00005021878 ##37	UBE2G2 (ENSCDRG00005021880)	ENSCDRG00005021881
Suina	ANCESTRAL SPECIES	35	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490.m #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT01020000234487	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000163441.f.b.b ##37	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977
Chacoan peccary	MODERN SPECIES	918										SIK1 (ENSCWAG00000021429) #15	HSF2BP (ENSCWAG00000021433) #16	RRP1B (ENSCWAG00000021439) #18	PDXK (ENSCWAG00000021452) #19	CSTB (ENSCWAG00000021465) #20	RRP1 (ENSCWAG00000021470) #21	AGPAT3 (ENSCWAG00000021478) #22	TRAPPC10 (ENSCWAG00000021486) #23	PWP2 (ENSCWAG00000021496) #24	GATD3 (ENSCWAG00000021510) #25	ICOSLG (ENSCWAG00000021521) #26	ENSCWAG00000021525 #27	AIRE (ENSCWAG00000021532) #28
Pig	MODERN SPECIES	4	PDE9A (ENSSSCG00000030016) #7	WDR4 (ENSSSCG00000023078) #8	ENSSSCG00000021991 #9	PKNOX1 (ENSSSCG00000037663) #10	CBS (ENSSSCG00000040779) #12	U2AF1 (ENSSSCG00000033653) #13	CRYAA (ENSSSCG00000038816) #14	SIK1 (ENSSSCG00000035037) #15	ENSSSCG00000045186	ENSSSCG00000022164 #16	RRP1B (ENSSSCG00000021698) #18	PDXK (ENSSSCG00000034758) #19	CSTB (ENSSSCG00000027357) #20	RRP1 (ENSSSCG00000037061) #21	ENSSSCG00000057666	AGPAT3 (ENSSSCG00000038081) #22	TRAPPC10 (ENSSSCG00000039085) #23	PWP2 (ENSSSCG00000029627) #24	GATD3 (ENSSSCG00000025525) #25	ENSSSCG00000022246 #26	DNMT3L (ENSSSCG00000028741) #27	AIRE (ENSSSCG00000025294) #28	PFKL (ENSSSCG00000028197) #29	CFAP410 (ENSSSCG00000024500) #30	TRPM2 (ENSSSCG00000023762) #31	LRRC3 (ENSSSCG00000053846) #32	TSPEAR (ENSSSCG00000022988) #33	ENSSSCG00000028768 ##37	ENSSSCG00000048449 ##37	ENSSSCG00000047309 ##37	ENSSSCG00000046681 ##37
Euarchontoglires	ANCESTRAL SPECIES	2	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505.x #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT01020000234487	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000158579	ENSGT00940000163845	ENSGT00940000163258	ENSGT00940000158193
Primates	ANCESTRAL SPECIES	1	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505.x #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT01020000234487	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000158579	ENSGT00940000163845	ENSGT00940000163258	ENSGT00940000158193
Haplorrhini	ANCESTRAL SPECIES	22	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505.x #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT01020000234487	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000163258.j	ENSGT00940000164049	ENSGT00940000163527	ENSGT00940000158579
Simiiformes	ANCESTRAL SPECIES	1	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505.x #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00860000135708	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT01020000234487	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000158579.l.b.b.a	ENSGT00940000163258.j	ENSGT00940000158579.l.b.b.b	ENSGT00940000163258.i.b
Platyrrhini	ANCESTRAL SPECIES	31	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505.x #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00860000135708	ENSGT00940000154826.qb #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00910000147401	ENSGT01020000234487	ENSGT00390000003873.v #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00940000158579.k	ENSGT00940000158579.l.a	ENSGT00940000163258.i.b
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	417																ENSANAG00000031608 #22	ENSANAG00000019650	NPAS2 (ENSANAG00000029045)	ENSANAG00000023888	TBC1D8 (ENSANAG00000003815)	ENSANAG00000031938	CNOT11 (ENSANAG00000028092)	RNF149 (ENSANAG00000031925)	CREG2 (ENSANAG00000036025)
Mas night monkey	MODERN SPECIES	1376	SLC37A1 (ENSANAG00000028307)	PDE9A (ENSANAG00000037833) #7	WDR4 (ENSANAG00000026274) #8	NDUFV3 (ENSANAG00000026013) #9	PKNOX1 (ENSANAG00000022045) #10	CBS (ENSANAG00000032848) #12	ENSANAG00000026034 #13	CRYAA (ENSANAG00000021687) #14	SIK1 (ENSANAG00000038083) #15	HSF2BP (ENSANAG00000037216) #16	RRP1B (ENSANAG00000034889) #18	ENSANAG00000033810	PDXK (ENSANAG00000019464) #19	ENSANAG00000038089 #20	RRP1 (ENSANAG00000037815) #21	ENSANAG00000036034 #22	ENSANAG00000035921	TRAPPC10 (ENSANAG00000032975) #23	PWP2 (ENSANAG00000034845) #24	GATD3 (ENSANAG00000032510) #25	ENSANAG00000031721 #26	DNMT3L (ENSANAG00000027897) #27	AIRE (ENSANAG00000031045) #28	PFKL (ENSANAG00000022126) #29	CFAP410 (ENSANAG00000021390) #30	TRPM2 (ENSANAG00000034661) #31	TSPEAR (ENSANAG00000032724) #33	ENSANAG00000032475	ENSANAG00000028487	ENSANAG00000027667	ENSANAG00000027010
Cebidae	ANCESTRAL SPECIES	32	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505.x #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826.qb #20	ENSGT00860000135708	ENSGT00940000154826.pb #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT01020000234487	ENSGT00390000003873.v #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00940000158579.k	ENSGT00940000158579.l.a	ENSGT00940000163258.i.b	ENSGT00940000163845.c
Cebidae_a	ANCESTRAL SPECIES	29	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196.m #9	ENSGT00940000159505.x #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826.qb #20	ENSGT00860000135708	ENSGT00940000154826.pb #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000016927.z	ENSGT00390000003873.v #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000158579.k	ENSGT00940000158579.l.a	ENSGT00940000163258.i.b	ENSGT00940000163845.c	ENSGT00940000158579.l.b.b.a.b
Bolivian squirrel monkey	MODERN SPECIES	66	PDE9A (ENSSBOG00000027099) #7	WDR4 (ENSSBOG00000026351) #8	NDUFV3 (ENSSBOG00000019466) #9	ENSSBOG00000004329	PKNOX1 (ENSSBOG00000018950) #10	CBS (ENSSBOG00000022215) #12	U2AF1 (ENSSBOG00000027084) #13	CRYAA (ENSSBOG00000026135) #14	SIK1 (ENSSBOG00000033825) #15	HSF2BP (ENSSBOG00000031228) #16	RRP1B (ENSSBOG00000034727) #18	ENSSBOG00000033475	PDXK (ENSSBOG00000023925) #19	ENSSBOG00000021578 #20	RRP1 (ENSSBOG00000034689) #21	AGPAT3 (ENSSBOG00000026342) #22	TRAPPC10 (ENSSBOG00000018376) #23	PWP2 (ENSSBOG00000034554) #24	GATD3 (ENSSBOG00000033759) #25	ICOSLG (ENSSBOG00000031169) #26	DNMT3L (ENSSBOG00000030998) #27	AIRE (ENSSBOG00000027491) #28	PFKL (ENSSBOG00000024155) #29	CFAP410 (ENSSBOG00000022331) #30	TRPM2 (ENSSBOG00000023964) #31	ENSSBOG00000030908	ENSSBOG00000029917	ENSSBOG00000025216	ENSSBOG00000027330	ENSSBOG00000034072	ENSSBOG00000033182
Capuchin	MODERN SPECIES	112	ENSCCAG00000033172	PDE9A (ENSCCAG00000001044) #7	WDR4 (ENSCCAG00000022755) #8	ENSCCAG00000022392 #9	PKNOX1 (ENSCCAG00000022902) #10	CBS (ENSCCAG00000032722) #12	U2AF1 (ENSCCAG00000036938) #13	CRYAA (ENSCCAG00000030217) #14	SIK1 (ENSCCAG00000028295) #15	HSF2BP (ENSCCAG00000031814) #16	RRP1B (ENSCCAG00000029384) #18	ENSCCAG00000001912	PDXK (ENSCCAG00000035149) #19	ENSCCAG00000030098 #20	RRP1 (ENSCCAG00000029828) #21	AGPAT3 (ENSCCAG00000035106) #22	ENSCCAG00000022399	TRAPPC10 (ENSCCAG00000028731) #23	PWP2 (ENSCCAG00000034616) #24	GATD3 (ENSCCAG00000023616) #25	ICOSLG (ENSCCAG00000034711) #26	DNMT3L (ENSCCAG00000028251) #27	AIRE (ENSCCAG00000033062) #28	PFKL (ENSCCAG00000023028) #29	CFAP410 (ENSCCAG00000019718) #30	TRPM2 (ENSCCAG00000035480) #31	ENSCCAG00000022693	ENSCCAG00000031995	ENSCCAG00000012157	ENSCCAG00000027045	ENSCCAG00000032996
Marmoset	MODERN SPECIES	13	RSPH1 (ENSCJAG00000005333)	SLC37A1 (ENSCJAG00000005291)	PDE9A (ENSCJAG00000085834) #7	WDR4 (ENSCJAG00000015778) #8	NDUFV3 (ENSCJAG00000015786) #9	PKNOX1 (ENSCJAG00000040086) #10	CBS (ENSCJAG00000015824) #12	U2AF1 (ENSCJAG00000015843) #13	CRYAA (ENSCJAG00000070733) #14	SIK1 (ENSCJAG00000015879) #15	HSF2BP (ENSCJAG00000059885) #16	RRP1B (ENSCJAG00000017077) #18	ENSCJAG00000043205 #19	ENSCJAG00000071745 #20	ENSCJAG00000052744	AGPAT3 (ENSCJAG00000086643) #22	ENSCJAG00000080531	TRAPPC10 (ENSCJAG00000005608) #23	PWP2 (ENSCJAG00000005570) #24	GATD3 (ENSCJAG00000005560) #25	ICOSLG (ENSCJAG00000003576) #26	DNMT3L (ENSCJAG00000087076) #27	AIRE (ENSCJAG00000013748) #28	PFKL (ENSCJAG00000017630) #29	CFAP410 (ENSCJAG00000017611) #30	TRPM2 (ENSCJAG00000073600) #31	LRRC3 (ENSCJAG00000081918) #32	TSPEAR (ENSCJAG00000015329) #33	ENSCJAG00000046358	KRTAP10-3 (ENSCJAG00000077838)	ENSCJAG00000041374
Catarrhini	ANCESTRAL SPECIES	25	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT01000000215029	ENSGT00940000159505.x #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00860000135708	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT01020000234487	ENSGT00950000182836.b.b.b.a #22	ENSGT00910000147401	ENSGT00390000003873 #23	ENSGT00900000140979.a.a.`b.a.o.a	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000158579.l.b.b.a	ENSGT00940000163258.j
Cercopithecidae	ANCESTRAL SPECIES	28	ENSGT00390000012196 #9	ENSGT01000000215029	ENSGT00940000159505.x #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a.ge #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826.nb #20	ENSGT00860000135708	ENSGT00940000154826.ob #20	ENSGT00390000011821.b #21	ENSGT01020000234487	ENSGT00950000182836.b.b.b.a #22	ENSGT00910000147401	ENSGT00390000003873 #23	ENSGT00900000140979.a.a.`b.a.o.a	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000158579.l.b.a	ENSGT00940000158579.l.b.b.a.f
Rhinopithecus	ANCESTRAL SPECIES	270									ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00910000147958	ENSGT00860000135708	ENSGT00390000003874 #19	ENSGT00940000154826.ob #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000158579.l.b.a	ENSGT00940000158579.l.b.b.a.f
Black snub-nosed monkey	MODERN SPECIES	924									HSF2BP (ENSRBIG00000038854) #16	RRP1B (ENSRBIG00000041689) #18	ENSRBIG00000028564	ENSRBIG00000024778	PDXK (ENSRBIG00000022396) #19	ENSRBIG00000032395 #20	RRP1 (ENSRBIG00000032082) #21	AGPAT3 (ENSRBIG00000029812) #22	TRAPPC10 (ENSRBIG00000029157) #23	PWP2 (ENSRBIG00000034365) #24	GATD3 (ENSRBIG00000040907) #25	ICOSLG (ENSRBIG00000042775) #26	DNMT3L (ENSRBIG00000029101) #27	AIRE (ENSRBIG00000034675) #28	PFKL (ENSRBIG00000024591) #29	CFAP410 (ENSRBIG00000036434) #30	TRPM2 (ENSRBIG00000042457) #31	LRRC3 (ENSRBIG00000013619) #32	ENSRBIG00000013411	KRTAP10-2 (ENSRBIG00000029279)	ENSRBIG00000039496	ENSRBIG00000029901	ENSRBIG00000040008
Golden snub-nosed monkey	MODERN SPECIES	1362									HSF2BP (ENSRROG00000032823) #16	RRP1B (ENSRROG00000031499) #18	PDXK (ENSRROG00000044416) #19	ENSRROG00000030459	ENSRROG00000042411	CSTB (ENSRROG00000038574) #20	RRP1 (ENSRROG00000039799) #21	AGPAT3 (ENSRROG00000031040) #22	ENSRROG00000032758	TRAPPC10 (ENSRROG00000043895) #23	PWP2 (ENSRROG00000031946) #24	GATD3 (ENSRROG00000034542) #25
Cercopithecinae	ANCESTRAL SPECIES	23	ENSGT00390000012196 #9	ENSGT01000000215029	ENSGT00940000159505.x #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a.ge #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826.nb.a.b #20	ENSGT00860000135708	ENSGT00940000154826.ob #20	ENSGT00390000011821.b #21	ENSGT01020000234487	ENSGT00950000182836.b.b.b.a #22	ENSGT00910000147401	ENSGT00390000003873 #23	ENSGT00900000140979.a.a.`b.a.o.a	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000158193	ENSGT00950000182895.a.b.j.b
Cercopithecinae_a	ANCESTRAL SPECIES	22	ENSGT00390000012196 #9	ENSGT01000000215029.c	ENSGT00940000159505.x #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a.ge #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00910000147350	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00860000135708	ENSGT00940000154826.ob #20	ENSGT00390000011821.b #21	ENSGT01020000234487	ENSGT00950000182836.b.b.b.a #22	ENSGT00910000147401	ENSGT00390000003873 #23	ENSGT00900000140979.a.a.`b.a.o.a	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000158579.l.a	ENSGT00940000163845.c
Macaca	ANCESTRAL SPECIES	3	ENSGT01000000215029.c	ENSGT00940000159505.x #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a.ge #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00910000147350	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826.ob #20	ENSGT00860000135708	ENSGT00940000154826.nb.b #20	ENSGT00390000011821.b #21	ENSGT01020000234487	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00940000158579.l.a	ENSGT00940000158579.l.b.b.a.e	ENSGT00510000047718 #33	ENSGT00940000158579.l.b.a	ENSGT00940000163845.c
Pig-tailed macaque	MODERN SPECIES	503	WDR4 (ENSMNEG00000033682) #8	NDUFV3 (ENSMNEG00000031842) #9	ERVH48-1 (ENSMNEG00000016913)	PKNOX1 (ENSMNEG00000035609) #10	CBS (ENSMNEG00000039488) #12	U2AF1 (ENSMNEG00000030283) #13	CRYAA (ENSMNEG00000005656) #14	SIK1 (ENSMNEG00000033778) #15	ENSMNEG00000025872	HSF2BP (ENSMNEG00000038532) #16	RRP1B (ENSMNEG00000034269) #18	ENSMNEG00000041372	PDXK (ENSMNEG00000045284) #19	CSTB (ENSMNEG00000029992) #20	RRP1 (ENSMNEG00000031210) #21	AGPAT3 (ENSMNEG00000033756) #22	TRAPPC10 (ENSMNEG00000033526) #23	PWP2 (ENSMNEG00000030782) #24	GATD3 (ENSMNEG00000038785) #25	ICOSLG (ENSMNEG00000029638) #26	DNMT3L (ENSMNEG00000042190) #27	AIRE (ENSMNEG00000011508) #28	PFKL (ENSMNEG00000032421) #29	CFAP410 (ENSMNEG00000034463) #30	TRPM2 (ENSMNEG00000027827) #31	LRRC3 (ENSMNEG00000021603) #32	ENSMNEG00000040527	ENSMNEG00000033060	ENSMNEG00000030729	ENSMNEG00000036953	ENSMNEG00000037098
Macaca_a	ANCESTRAL SPECIES	22	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT01000000215029.c	ENSGT00940000159505.x #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a.ge #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00910000147350	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826.ob #20	ENSGT00390000011821.b #21	ENSGT01020000234487	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00940000163845.d	ENSGT00940000158579.l.b.b.a.e	ENSGT00940000158579.l.b.a	ENSGT00940000163258.i.b	ENSGT00940000164049.b.a
Rhesus	MODERN SPECIES	13	SLC37A1 (ENSMMUG00000018085)	PDE9A (ENSMMUG00000022107) #7	WDR4 (ENSMMUG00000062729) #8	NDUFV3 (ENSMMUG00000001553) #9	ENSMMUG00000044879	PKNOX1 (ENSMMUG00000009288) #10	CBS (ENSMMUG00000009289) #12	U2AF1 (ENSMMUG00000022769) #13	CRYAA (ENSMMUG00000020271) #14	SIK1 (ENSMMUG00000020050) #15	HSF2BP (ENSMMUG00000022791) #16	RRP1B (ENSMMUG00000000104) #18	PDXK (ENSMMUG00000062457) #19	CSTB (ENSMMUG00000012303) #20	RRP1 (ENSMMUG00000012304) #21	AGPAT3 (ENSMMUG00000045179) #22	TRAPPC10 (ENSMMUG00000005269) #23	PWP2 (ENSMMUG00000005271) #24	GATD3 (ENSMMUG00000005272) #25	ICOSLG (ENSMMUG00000010647) #26	DNMT3L (ENSMMUG00000010648) #27	AIRE (ENSMMUG00000004168) #28	PFKL (ENSMMUG00000004173) #29	CFAP410 (ENSMMUG00000049578) #30	TRPM2 (ENSMMUG00000004175) #31	LRRC3 (ENSMMUG00000049755) #32	KRTAP10-10 (ENSMMUG00000022559)	ENSMMUG00000022558	ENSMMUG00000030497	KRTAP10-8 (ENSMMUG00000048049)	KRTAP10-9 (ENSMMUG00000043221)
Crab-eating macaque	MODERN SPECIES	13	ENSMFAG00000051957	PKNOX1 (ENSMFAG00000039213) #10	ENSMFAG00000063594	CBS (ENSMFAG00000038794) #12	ENSMFAG00000032317 #13	CRYAA (ENSMFAG00000036551) #14	SIK1 (ENSMFAG00000032324) #15	ENSMFAG00000063691	HSF2BP (ENSMFAG00000041607) #16	RRP1B (ENSMFAG00000039152) #18	ENSMFAG00000056006	PDXK (ENSMFAG00000042485) #19	CSTB (ENSMFAG00000061351) #20	RRP1 (ENSMFAG00000003202) #21	ENSMFAG00000057571	ENSMFAG00000053688 #22	TRAPPC10 (ENSMFAG00000041704) #23	PWP2 (ENSMFAG00000044448) #24	GATD3 (ENSMFAG00000046334) #25	ICOSLG (ENSMFAG00000040533) #26	DNMT3L (ENSMFAG00000046145) #27	AIRE (ENSMFAG00000001488) #28	PFKL (ENSMFAG00000037062) #29	CFAP410 (ENSMFAG00000049270) #30	TRPM2 (ENSMFAG00000001773) #31	LRRC3 (ENSMFAG00000028969) #32	KRTAP10-4 (ENSMFAG00000031679)	KRTAP10-9 (ENSMFAG00000053657)	KRTAP10-7 (ENSMFAG00000051280)	TSPEAR (ENSMFAG00000001348) #33	UBE2G2 (ENSMFAG00000057431)
Cercopithecinae_b	ANCESTRAL SPECIES	29	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT01000000215029.c	ENSGT00940000159505.x #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a.ge #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00910000147350	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00860000135708	ENSGT00940000154826.ob #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00910000147401	ENSGT00390000003873 #23	ENSGT00900000140979.a.a.`b.a.o.a	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000158579.l.a	ENSGT00940000158579.l.b.a
Cercopithecinae_d	ANCESTRAL SPECIES	36	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT01000000215029.c	ENSGT00940000159505.x #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a.ge #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00910000147350	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00860000135708	ENSGT00940000154826.ob #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00910000147401	ENSGT00390000003873 #23	ENSGT00900000140979.a.a.`b.a.o.a	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000158579.l.b.a	ENSGT00940000158579.l.b.b.a.f
Drill	MODERN SPECIES	1420	WDR4 (ENSMLEG00000042177) #8	NDUFV3 (ENSMLEG00000042871) #9	ERVH48-1 (ENSMLEG00000001600)	PKNOX1 (ENSMLEG00000037117) #10	CBS (ENSMLEG00000041980) #12	ENSMLEG00000029446 #13	CRYAA (ENSMLEG00000039416) #14	SIK1 (ENSMLEG00000030826) #15	ENSMLEG00000034490	HSF2BP (ENSMLEG00000042323) #16	RRP1B (ENSMLEG00000040044) #18	ENSMLEG00000002822	PDXK (ENSMLEG00000015398) #19	ENSMLEG00000031224 #20	RRP1 (ENSMLEG00000037797) #21	AGPAT3 (ENSMLEG00000033816) #22	ENSMLEG00000026219	TRAPPC10 (ENSMLEG00000027219) #23	PWP2 (ENSMLEG00000039860) #24	GATD3 (ENSMLEG00000027477) #25	ICOSLG (ENSMLEG00000043829) #26	DNMT3L (ENSMLEG00000041399) #27	AIRE (ENSMLEG00000026732) #28	PFKL (ENSMLEG00000030281) #29	CFAP410 (ENSMLEG00000038505) #30	TRPM2 (ENSMLEG00000009280) #31	LRRC3 (ENSMLEG00000001984) #32	ENSMLEG00000040298	ENSMLEG00000031061	TSPEAR (ENSMLEG00000035979) #33	ENSMLEG00000034784
Sooty mangabey	MODERN SPECIES	465	PDE9A (ENSCATG00000039788) #7	WDR4 (ENSCATG00000042955) #8	NDUFV3 (ENSCATG00000043099) #9	ERVH48-1 (ENSCATG00000032142)	PKNOX1 (ENSCATG00000033829) #10	CBS (ENSCATG00000037956) #12	ENSCATG00000044934 #13	CRYAA (ENSCATG00000044220) #14	SIK1 (ENSCATG00000037666) #15	ENSCATG00000015361	HSF2BP (ENSCATG00000041814) #16	RRP1B (ENSCATG00000017423) #18	PDXK (ENSCATG00000037302) #19	ENSCATG00000042137 #20	RRP1 (ENSCATG00000015632) #21	AGPAT3 (ENSCATG00000027955) #22	ENSCATG00000034946	TRAPPC10 (ENSCATG00000014984) #23	ENSCATG00000037979	PWP2 (ENSCATG00000032550) #24	GATD3 (ENSCATG00000021742) #25	ICOSLG (ENSCATG00000023031) #26	DNMT3L (ENSCATG00000034363) #27	AIRE (ENSCATG00000034405) #28	PFKL (ENSCATG00000038502) #29	CFAP410 (ENSCATG00000040484) #30	TRPM2 (ENSCATG00000034197) #31	LRRC3 (ENSCATG00000017064) #32	TSPEAR (ENSCATG00000034984) #33	ENSCATG00000041458	ENSCATG00000041080
Vervet Monkey	MODERN SPECIES	11	SLC37A1 (ENSCSAG00000008088)	ENSCSAG00000008076	PDE9A (ENSCSAG00000008068) #7	WDR4 (ENSCSAG00000008058) #8	NDUFV3 (ENSCSAG00000008049) #9	PKNOX1 (ENSCSAG00000008042) #10	CBS (ENSCSAG00000008036) #12	U2AF1 (ENSCSAG00000008019) #13	CRYAA (ENSCSAG00000007988) #14	SIK1 (ENSCSAG00000007979) #15	HSF2BP (ENSCSAG00000007970) #16	RRP1B (ENSCSAG00000007961) #18	PDXK (ENSCSAG00000007949) #19	ENSCSAG00000007941 #20	RRP1 (ENSCSAG00000007936) #21	AGPAT3 (ENSCSAG00000007926) #22	TRAPPC10 (ENSCSAG00000007920) #23	PWP2 (ENSCSAG00000007903) #24	GATD3 (ENSCSAG00000007892) #25	ENSCSAG00000007887	ICOSLG (ENSCSAG00000007876) #26	DNMT3L (ENSCSAG00000007863) #27	AIRE (ENSCSAG00000007836) #28	PFKL (ENSCSAG00000007817) #29	CFAP410 (ENSCSAG00000007805) #30	TRPM2 (ENSCSAG00000007727) #31	LRRC3 (ENSCSAG00000000277) #32	TSPEAR (ENSCSAG00000007591) #33	ENSCSAG00000007568	KRTAP10-3 (ENSCSAG00000007561)	KRTAP10-4 (ENSCSAG00000007551)
Hominoidea	ANCESTRAL SPECIES	26	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT01000000215029	ENSGT00940000159505.x #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00860000135708	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT01020000234487	ENSGT00950000182836.b.b.b.a #22	ENSGT00910000147401	ENSGT00390000003873 #23	ENSGT00900000140979.a.a.`b.a.o.a	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000163258.j	ENSGT00940000158579.l.b.b.b
Hominidae	ANCESTRAL SPECIES	25	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT01000000215029	ENSGT00940000159505.x #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000167184	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT01020000234487	ENSGT00950000182836.b.b.b.a #22	ENSGT00910000147401	ENSGT00390000003873 #23	ENSGT00900000140979.a.a.`b.a.o.a	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000158579.l.b.b.a.d	ENSGT00940000163258.j
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	27	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT01000000215029	ENSGT00940000159505.x #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000167184	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT01020000234487	ENSGT00950000182836.b.b.b.a #22	ENSGT00910000147401	ENSGT00390000003873 #23	ENSGT00900000140979.a.a.`b.a.o.a	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000158579.l.b.b.a.d	ENSGT00940000163258.j
Gorilla	MODERN SPECIES	12	SLC37A1 (ENSGGOG00000012067)	PDE9A (ENSGGOG00000014263) #7	WDR4 (ENSGGOG00000016652) #8	NDUFV3 (ENSGGOG00000014547) #9	ERVH48-1 (ENSGGOG00000037204)	PKNOX1 (ENSGGOG00000013783) #10	CBS (ENSGGOG00000010251) #12	ENSGGOG00000038883	CRYAA (ENSGGOG00000010345) #14	SIK1 (ENSGGOG00000007792) #15	HSF2BP (ENSGGOG00000012059) #16	RRP1B (ENSGGOG00000012069) #18	PDXK (ENSGGOG00000003904) #19	CSTB (ENSGGOG00000024406) #20	RRP1 (ENSGGOG00000000173) #21	AGPAT3 (ENSGGOG00000043336) #22	ENSGGOG00000044032	TRAPPC10 (ENSGGOG00000010716) #23	PWP2 (ENSGGOG00000041875) #24	GATD3 (ENSGGOG00000041897) #25	ENSGGOG00000012425 #26	DNMT3L (ENSGGOG00000012431) #27	AIRE (ENSGGOG00000005672) #28	PFKL (ENSGGOG00000005687) #29	ENSGGOG00000005702 #30	TRPM2 (ENSGGOG00000008410) #31	LRRC3 (ENSGGOG00000008435) #32	TSPEAR (ENSGGOG00000002047) #33	ENSGGOG00000039833	ENSGGOG00000040198	KRTAP10-7 (ENSGGOG00000044027)
Homo/Pan group	ANCESTRAL SPECIES	26	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT01000000215029	ENSGT00940000159505.x #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000167184	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT01020000234487	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00900000140979.a.a.`b.a.o.a	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000158579.l.a	ENSGT00940000158579.l.b.b.a.c	ENSGT00940000164049.b.b
Pan	ANCESTRAL SPECIES	27	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT01000000215029	ENSGT00940000159505.x #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000167184	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00900000140979.a.a.`b.a.o.a	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000158579.l.a	ENSGT00940000163845.c	ENSGT00940000158579.l.b.b.a.c
Chimpanzee	MODERN SPECIES	12	PDE9A (ENSPTRG00000013946) #7	WDR4 (ENSPTRG00000013948) #8	NDUFV3 (ENSPTRG00000047245) #9	ERVH48-1 (ENSPTRG00000051369)	PKNOX1 (ENSPTRG00000013950) #10	CBS (ENSPTRG00000013951) #12	ENSPTRG00000013952 #13	ENSPTRG00000044914	CRYAA (ENSPTRG00000013953) #14	SIK1 (ENSPTRG00000013954) #15	HSF2BP (ENSPTRG00000013957) #16	RRP1B (ENSPTRG00000013958) #18	PDXK (ENSPTRG00000040962) #19	CSTB (ENSPTRG00000048077) #20	RRP1 (ENSPTRG00000013962) #21	AGPAT3 (ENSPTRG00000042805) #22	TRAPPC10 (ENSPTRG00000013968) #23	ENSPTRG00000048335	PWP2 (ENSPTRG00000013969) #24	GATD3 (ENSPTRG00000047816) #25	ENSPTRG00000013972 #26	DNMT3L (ENSPTRG00000013973) #27	AIRE (ENSPTRG00000013974) #28	PFKL (ENSPTRG00000022972) #29	CFAP410 (ENSPTRG00000013976) #30	TRPM2 (ENSPTRG00000013977) #31	LRRC3 (ENSPTRG00000013978) #32	TSPEAR (ENSPTRG00000013980) #33	KRTAP10-2 (ENSPTRG00000013982)	ENSPTRG00000046656	KRTAP10-5 (ENSPTRG00000031415)
Bonobo	MODERN SPECIES	12	PDE9A (ENSPPAG00000027576) #7	WDR4 (ENSPPAG00000038150) #8	NDUFV3 (ENSPPAG00000016184) #9	ERVH48-1 (ENSPPAG00000006329)	PKNOX1 (ENSPPAG00000027586) #10	CBS (ENSPPAG00000042865) #12	U2AF1 (ENSPPAG00000000845) #13	ENSPPAG00000026875	CRYAA (ENSPPAG00000034607) #14	SIK1 (ENSPPAG00000034814) #15	HSF2BP (ENSPPAG00000034999) #16	RRP1B (ENSPPAG00000035319) #18	PDXK (ENSPPAG00000020347) #19	ENSPPAG00000028631 #20	RRP1 (ENSPPAG00000029050) #21	AGPAT3 (ENSPPAG00000029344) #22	TRAPPC10 (ENSPPAG00000030751) #23	ENSPPAG00000035184	PWP2 (ENSPPAG00000037874) #24	GATD3 (ENSPPAG00000030535) #25	ENSPPAG00000036658 #26	DNMT3L (ENSPPAG00000041935) #27	AIRE (ENSPPAG00000018145) #28	PFKL (ENSPPAG00000028154) #29	ENSPPAG00000033399 #30	TRPM2 (ENSPPAG00000036474) #31	LRRC3 (ENSPPAG00000006087) #32	TSPEAR (ENSPPAG00000027981) #33	ENSPPAG00000029414	ENSPPAG00000029990	ENSPPAG00000030230
Human	MODERN SPECIES	13	PDE9A (ENSG00000160191) #7	WDR4 (ENSG00000160193) #8	NDUFV3 (ENSG00000160194) #9	ERVH48-1 (ENSG00000233056)	PKNOX1 (ENSG00000160199) #10	CBS (ENSG00000160200) #12	U2AF1 (ENSG00000160201) #13	CRYAA (ENSG00000160202) #14	SIK1 (ENSG00000142178) #15	HSF2BP (ENSG00000160207) #16	H2BC12L (ENSG00000234289)	RRP1B (ENSG00000160208) #18	PDXK (ENSG00000160209) #19	CSTB (ENSG00000160213) #20	RRP1 (ENSG00000160214) #21	AGPAT3 (ENSG00000160216) #22	ENSG00000288593	TRAPPC10 (ENSG00000160218) #23	PWP2 (ENSG00000241945) #24	GATD3 (ENSG00000160221) #25	ICOSLG (ENSG00000160223) #26	DNMT3L (ENSG00000142182) #27	AIRE (ENSG00000160224) #28	PFKL (ENSG00000141959) #29	CFAP410 (ENSG00000160226) #30	TRPM2 (ENSG00000142185) #31	LRRC3 (ENSG00000160233) #32	TSPEAR (ENSG00000175894) #33	KRTAP10-1 (ENSG00000215455)	KRTAP10-2 (ENSG00000205445)	KRTAP10-3 (ENSG00000212935)
Orangutan	MODERN SPECIES	12	NDUFV3 (ENSPPYG00000011459) #9	ERVH48-1 (ENSPPYG00000032563)	PKNOX1 (ENSPPYG00000011461) #10	ENSPPYG00000041500	CBS (ENSPPYG00000011462) #12	U2AF1 (ENSPPYG00000011463) #13	ENSPPYG00000040498	ENSPPYG00000011465 #14	SIK1 (ENSPPYG00000011466) #15	ENSPPYG00000011469 #16	RRP1B (ENSPPYG00000011470) #18	PDXK (ENSPPYG00000019998) #19	CSTB (ENSPPYG00000036267) #20	RRP1 (ENSPPYG00000011474) #21	ENSPPYG00000034644	AGPAT3 (ENSPPYG00000011476) #22	ENSPPYG00000036566	TRAPPC10 (ENSPPYG00000011477) #23	PWP2 (ENSPPYG00000011478) #24	ENSPPYG00000011479 #25	ICOSLG (ENSPPYG00000011481) #26	DNMT3L (ENSPPYG00000035139) #27	AIRE (ENSPPYG00000011482) #28	PFKL (ENSPPYG00000011483) #29	ENSPPYG00000041331 #30	TRPM2 (ENSPPYG00000011485) #31	LRRC3 (ENSPPYG00000011486) #32	TSPEAR (ENSPPYG00000011488) #33	KRTAP10-3 (ENSPPYG00000037806)	ENSPPYG00000039780	KRTAP10-5 (ENSPPYG00000011492)
Gibbon	MODERN SPECIES	17	NDUFV3 (ENSNLEG00000014663) #9	ERVH48-1 (ENSNLEG00000027799)	PKNOX1 (ENSNLEG00000014675) #10	CBS (ENSNLEG00000029685) #12	U2AF1 (ENSNLEG00000030710) #13	ENSNLEG00000033479	CRYAA (ENSNLEG00000014752) #14	SIK1 (ENSNLEG00000001409) #15	HSF2BP (ENSNLEG00000034577) #16	RRP1B (ENSNLEG00000001490) #18	PDXK (ENSNLEG00000001565) #19	ENSNLEG00000028797	ENSNLEG00000001583 #20	RRP1 (ENSNLEG00000034734) #21	ENSNLEG00000033631	AGPAT3 (ENSNLEG00000001755) #22	TRAPPC10 (ENSNLEG00000001820) #23	ENSNLEG00000029247	PWP2 (ENSNLEG00000001928) #24	GATD3 (ENSNLEG00000033634) #25	ENSNLEG00000033148 #26	DNMT3L (ENSNLEG00000002093) #27	ENSNLEG00000027646 #28	PFKL (ENSNLEG00000002171) #29	ENSNLEG00000002219 #30	ENSNLEG00000002224 #31	TSPEAR (ENSNLEG00000002263) #33	KRTAP10-2 (ENSNLEG00000027209)	KRTAP10-3 (ENSNLEG00000026713)	ENSNLEG00000027551	KRTAP10-5 (ENSNLEG00000026989)
Tarsier	MODERN SPECIES	4156																AGPAT3 (ENSTSYG00000013680) #22	TRAPPC10 (ENSTSYG00000009018) #23	PWP2 (ENSTSYG00000009022) #24	GATD3 (ENSTSYG00000013874) #25
Strepsirrhini	ANCESTRAL SPECIES	1	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505.x #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000164049	ENSGT00940000163527	ENSGT00940000158579	ENSGT00940000163258	ENSGT00940000163441.f.a.a.a #37	ENSGT00940000154360.A.b #32
Lemuriformes	ANCESTRAL SPECIES	9	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505.x #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000163527.a	ENSGT00940000158579	ENSGT00940000163258	ENSGT00940000163441.f.a.a.a #37	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33
Lemuriformes_a	ANCESTRAL SPECIES	183											ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000163527.a	ENSGT00940000158579	ENSGT00940000163258	ENSGT00940000163441.f.a.a.a #37	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33
Coquerels sifaka	MODERN SPECIES	860																ENSPCOG00000017034 #22	TRAPPC10 (ENSPCOG00000023846) #23	PWP2 (ENSPCOG00000012856) #24	GATD3 (ENSPCOG00000007721) #25	ICOSLG (ENSPCOG00000022096) #26	DNMT3L (ENSPCOG00000022179) #27	AIRE (ENSPCOG00000025712) #28	PFKL (ENSPCOG00000008346) #29	CFAP410 (ENSPCOG00000015158) #30	TRPM2 (ENSPCOG00000000159) #31	ENSPCOG00000015036	ENSPCOG00000020643	TSPEAR (ENSPCOG00000019364) #33	ENSPCOG00000012194 #37	ENSPCOG00000017762	ENSPCOG00000020795
Greater bamboo lemur	MODERN SPECIES	618										HSF2BP (ENSPSMG00000000840) #16	RRP1B (ENSPSMG00000000878) #18	PDXK (ENSPSMG00000000981) #19	CSTB (ENSPSMG00000001087) #20	RRP1 (ENSPSMG00000001127) #21	ENSPSMG00000001142	AGPAT3 (ENSPSMG00000001184) #22	ENSPSMG00000001203	TRAPPC10 (ENSPSMG00000001308) #23	PWP2 (ENSPSMG00000001395) #24	ENSPSMG00000001422 #25	ICOSLG (ENSPSMG00000001460) #26	DNMT3L (ENSPSMG00000001478) #27	AIRE (ENSPSMG00000001491) #28	PFKL (ENSPSMG00000001565) #29	TRPM2 (ENSPSMG00000001756) #31	LRRC3 (ENSPSMG00000001980) #32	TSPEAR (ENSPSMG00000002016) #33	ENSPSMG00000002079	ENSPSMG00000002099	ENSPSMG00000002110
Mouse lemur	MODERN SPECIES	24	PDE9A (ENSMICG00000016258) #7	WDR4 (ENSMICG00000042106) #8	NDUFV3 (ENSMICG00000046617) #9	PKNOX1 (ENSMICG00000037878) #10	CBS (ENSMICG00000041663) #12	U2AF1 (ENSMICG00000013835) #13	CRYAA (ENSMICG00000035380) #14	ENSMICG00000035845	ENSMICG00000029407	SIK1 (ENSMICG00000000552) #15	HSF2BP (ENSMICG00000004680) #16	RRP1B (ENSMICG00000004686) #18	PDXK (ENSMICG00000004696) #19	CSTB (ENSMICG00000031601) #20	RRP1 (ENSMICG00000004700) #21	AGPAT3 (ENSMICG00000047320) #22	TRAPPC10 (ENSMICG00000000992) #23	PWP2 (ENSMICG00000001002) #24	GATD3 (ENSMICG00000001007) #25	ICOSLG (ENSMICG00000001250) #26	DNMT3L (ENSMICG00000048144) #27	AIRE (ENSMICG00000034908) #28	ENSMICG00000046893	PFKL (ENSMICG00000035233) #29	CFAP410 (ENSMICG00000026921) #30	TRPM2 (ENSMICG00000012499) #31	TSPEAR (ENSMICG00000009957) #33	BACE2 (ENSMICG00000027643)	FAM3B (ENSMICG00000012335)	MX2 (ENSMICG00000012345)	MX1 (ENSMICG00000017322)
Bushbaby	MODERN SPECIES	243	SLC37A1 (ENSOGAG00000015740)	PDE9A (ENSOGAG00000015745) #7	WDR4 (ENSOGAG00000003658) #8	ENSOGAG00000003661 #9	PKNOX1 (ENSOGAG00000003664) #10	CBS (ENSOGAG00000016500) #12	ENSOGAG00000032959	ENSOGAG00000016504 #13	CRYAA (ENSOGAG00000016506) #14	SIK1 (ENSOGAG00000000860) #15	HSF2BP (ENSOGAG00000009866) #16	RRP1B (ENSOGAG00000009872) #18	PDXK (ENSOGAG00000006093) #19	CSTB (ENSOGAG00000006101) #20	RRP1 (ENSOGAG00000006105) #21	AGPAT3 (ENSOGAG00000003775) #22	TRAPPC10 (ENSOGAG00000012463) #23	PWP2 (ENSOGAG00000012473) #24	GATD3 (ENSOGAG00000012480) #25	ICOSLG (ENSOGAG00000015366) #26	DNMT3L (ENSOGAG00000015368) #27	AIRE (ENSOGAG00000010769) #28	PFKL (ENSOGAG00000027753) #29	CFAP410 (ENSOGAG00000003170) #30	TRPM2 (ENSOGAG00000014398) #31	LRRC3 (ENSOGAG00000013776) #32	TSPEAR (ENSOGAG00000003682) #33	ENSOGAG00000034456	ENSOGAG00000033488	ENSOGAG00000012063	SUMO3 (ENSOGAG00000004715)
Euarchontoglires_A	ANCESTRAL SPECIES	2	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505.x #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000158579	ENSGT00940000163845	ENSGT00940000163258	ENSGT00940000155183 #35
Glires	ANCESTRAL SPECIES	2	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505.x #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000163258	ENSGT00940000163441.f.a.a.a #37	ENSGT00940000158579	ENSGT00940000163845
Rodentia	ANCESTRAL SPECIES	2	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505.x #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000155183 #35	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977
Rodentia_A	ANCESTRAL SPECIES	5	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505.x #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000155183 #35	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977
Sciuridae	ANCESTRAL SPECIES	12	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505.x #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977	ENSGT01090000259987.a.a.a
Marmotini	ANCESTRAL SPECIES	13	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505.x #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826.lb #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000158193	ENSGT00950000182895.a.b.j.o	ENSGT00390000004977	ENSGT01090000259987.a.a.a
Alpin marmot	MODERN SPECIES	4	SLC37A1 (ENSMMMG00000010809)	PDE9A (ENSMMMG00000010894) #7	WDR4 (ENSMMMG00000011036) #8	ENSMMMG00000011055 #9	PKNOX1 (ENSMMMG00000011067) #10	CBS (ENSMMMG00000011087) #12	U2AF1 (ENSMMMG00000011117) #13	CRYAA (ENSMMMG00000011152) #14	SIK1 (ENSMMMG00000011169) #15	HSF2BP (ENSMMMG00000011193) #16	RRP1B (ENSMMMG00000011209) #18	PDXK (ENSMMMG00000011250) #19	ENSMMMG00000011256 #20	RRP1 (ENSMMMG00000011263) #21	ENSMMMG00000011344	AGPAT3 (ENSMMMG00000011363) #22	TRAPPC10 (ENSMMMG00000011441) #23	PWP2 (ENSMMMG00000011468) #24	GATD3 (ENSMMMG00000012356) #25	ICOSLG (ENSMMMG00000012361) #26	ENSMMMG00000012363 #27	AIRE (ENSMMMG00000012367) #28	ENSMMMG00000012488 #29	CFAP410 (ENSMMMG00000012554) #30	TRPM2 (ENSMMMG00000012573) #31	LRRC3 (ENSMMMG00000012614) #32	TSPEAR (ENSMMMG00000012623) #33	ENSMMMG00000012640	ENSMMMG00000012650 #37	ENSMMMG00000012657	UBE2G2 (ENSMMMG00000012664)
Marmotini_b	ANCESTRAL SPECIES	30	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505.x #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826.lb #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a.db #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32
Arctic ground squirrel	MODERN SPECIES	443	RSPH1 (ENSUPAG00010003495)	SLC37A1 (ENSUPAG00010003472)	PDE9A (ENSUPAG00010003388) #7	WDR4 (ENSUPAG00010003363) #8	ENSUPAG00010003358 #9	PKNOX1 (ENSUPAG00010003344) #10	CBS (ENSUPAG00010003327) #12	U2AF1 (ENSUPAG00010003308) #13	CRYAA (ENSUPAG00010003295) #14	SIK1 (ENSUPAG00010003268) #15	HSF2BP (ENSUPAG00010003260) #16	RRP1B (ENSUPAG00010003249) #18	PDXK (ENSUPAG00010003236) #19	ENSUPAG00010003225 #20	RRP1 (ENSUPAG00010003195) #21	AGPAT3 (ENSUPAG00010003091) #22	TRAPPC10 (ENSUPAG00010003060) #23	PWP2 (ENSUPAG00010003026) #24	GATD3 (ENSUPAG00010003022) #25	ICOSLG (ENSUPAG00010003013) #26	DNMT3L (ENSUPAG00010003002) #27	AIRE (ENSUPAG00010002765) #28	PFKL (ENSUPAG00010002724) #29	CFAP410 (ENSUPAG00010002705) #30	TRPM2 (ENSUPAG00010002652) #31	LRRC3 (ENSUPAG00010002648) #32
Squirrel	MODERN SPECIES	100	RSPH1 (ENSSTOG00000002331)	SLC37A1 (ENSSTOG00000025445)	PDE9A (ENSSTOG00000001452) #7	WDR4 (ENSSTOG00000000442) #8	NDUFV3 (ENSSTOG00000000445) #9	PKNOX1 (ENSSTOG00000000447) #10	CBS (ENSSTOG00000024905) #12	U2AF1 (ENSSTOG00000012766) #13	CRYAA (ENSSTOG00000019571) #14	SIK1 (ENSSTOG00000003810) #15	HSF2BP (ENSSTOG00000011783) #16	RRP1B (ENSSTOG00000011790) #18	PDXK (ENSSTOG00000007194) #19	CSTB (ENSSTOG00000025748) #20	RRP1 (ENSSTOG00000011116) #21	AGPAT3 (ENSSTOG00000010466) #22	TRAPPC10 (ENSSTOG00000029008) #23	PWP2 (ENSSTOG00000014194) #24	ENSSTOG00000029443 #25	ICOSLG (ENSSTOG00000026567) #26	DNMT3L (ENSSTOG00000028895) #27	AIRE (ENSSTOG00000023870) #28	PFKL (ENSSTOG00000026523) #29	CFAP410 (ENSSTOG00000008553) #30	TRPM2 (ENSSTOG00000024472) #31	LRRC3 (ENSSTOG00000023533) #32
Eurasian red squirrel	MODERN SPECIES	1	PDE9A (ENSSVLG00005011481) #7	ENSSVLG00005011248	WDR4 (ENSSVLG00005025158) #8	ENSSVLG00005025141 #9	PKNOX1 (ENSSVLG00005025120) #10	CBS (ENSSVLG00005025055) #12	U2AF1 (ENSSVLG00005024981) #13	CRYAA (ENSSVLG00005024913) #14	ENSSVLG00005024890 #15	ENSSVLG00005024861	HSF2BP (ENSSVLG00005024842) #16	ENSSVLG00005024819 #18	PDXK (ENSSVLG00005024785) #19	CSTB (ENSSVLG00005024758) #20	RRP1 (ENSSVLG00005024724) #21	AGPAT3 (ENSSVLG00005024678) #22	TRAPPC10 (ENSSVLG00005024638) #23	PWP2 (ENSSVLG00005024557) #24	GATD3 (ENSSVLG00005024474) #25	ICOSLG (ENSSVLG00005024369) #26	ENSSVLG00005024326 #27	AIRE (ENSSVLG00005023997) #28	PFKL (ENSSVLG00005023925) #29	CFAP410 (ENSSVLG00005023882) #30	TRPM2 (ENSSVLG00005023598) #31	LRRC3 (ENSSVLG00005023556) #32	ENSSVLG00005023369	ENSSVLG00005023080	ENSSVLG00005022707	ENSSVLG00005022624	TSPEAR (ENSSVLG00005022529) #33
Hystricomorpha	ANCESTRAL SPECIES	60	ENSGT00940000162185	ENSGT00950000183022.b	ENSGT00940000158212.B	ENSGT00390000007989	ENSGT00940000155992	ENSGT00390000015709	ENSGT01090000259987.a.a.a	ENSGT00390000004977	ENSGT00950000182895.a.b.j	ENSGT00940000158193	ENSGT00940000155183 #35	ENSGT00510000047718 #33	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00950000183004.a.b.a.b	ENSGT00940000155686.n.b
Hystricomorpha_a	ANCESTRAL SPECIES	37	ENSGT00940000162185	ENSGT00950000183022.b	ENSGT00940000158212.B	ENSGT00390000007989	ENSGT00940000155992	ENSGT00390000015709	ENSGT01090000259987.a.a.a	ENSGT00390000004977	ENSGT00950000182895.a.b.j	ENSGT00940000158193	ENSGT00940000155183 #35	ENSGT00510000047718 #33	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00950000183004.a.b.a.b	ENSGT00940000155686.n.b
Hystricomorpha_b	ANCESTRAL SPECIES	34	ENSGT00940000162185	ENSGT00950000183022.b	ENSGT00940000158212.B	ENSGT00390000007989	ENSGT00940000155992	ENSGT00390000015709	ENSGT01090000259987.a.a.a	ENSGT00390000004977	ENSGT00950000182895.a.a.a.b.f	ENSGT00940000158193	ENSGT00940000155183 #35	ENSGT00510000047718 #33	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00950000183004.a.b.a.b	ENSGT00940000155686.n.b
Long-tailed chinchilla	MODERN SPECIES	114	SLX9 (ENSCLAG00000015540)	ITGB2 (ENSCLAG00000011530)	PTTG1IP (ENSCLAG00000008686)	ENSCLAG00000006914	UBE2G2 (ENSCLAG00000006675)	ENSCLAG00000006283	ENSCLAG00000005933	ENSCLAG00000005246	ENSCLAG00000004501 #35	ENSCLAG00000007645	ENSCLAG00000005431 #35	TSPEAR (ENSCLAG00000006788) #33	PDXK (ENSCLAG00000004982) #19	CSTB (ENSCLAG00000009970) #20	RRP1 (ENSCLAG00000011639) #21	AGPAT3 (ENSCLAG00000005641) #22	TRAPPC10 (ENSCLAG00000004935) #23	PWP2 (ENSCLAG00000009503) #24	GATD3 (ENSCLAG00000006863) #25	ICOSLG (ENSCLAG00000004572) #26	DNMT3L (ENSCLAG00000008128) #27	AIRE (ENSCLAG00000004699) #28	PFKL (ENSCLAG00000006907) #29	CFAP410 (ENSCLAG00000005977) #30	TRPM2 (ENSCLAG00000007001) #31	LRRC3 (ENSCLAG00000006488) #32	TMPRSS2 (ENSCLAG00000006480)	FAM3B (ENSCLAG00000005832)	ENSCLAG00000006920	BACE2 (ENSCLAG00000006208)	DSCAM (ENSCLAG00000016317)
Degu	MODERN SPECIES	86	COL6A2 (ENSODEG00000013531)	ENSODEG00000020105	ENSODEG00000013981	PCBP3 (ENSODEG00000012873)	ENSODEG00000013398	ENSODEG00000020203	POFUT2 (ENSODEG00000013451)	ADARB1 (ENSODEG00000014508)	ITGB2 (ENSODEG00000013569)	PTTG1IP (ENSODEG00000013537)	ENSODEG00000013838	ENSODEG00000014012	ENSODEG00000013439 #35	TSPEAR (ENSODEG00000013818) #33	PDXK (ENSODEG00000013386) #19	AGPAT3 (ENSODEG00000012787) #22	ENSODEG00000013648 #23	PWP2 (ENSODEG00000013073) #24	ENSODEG00000013954 #25	PFKL (ENSODEG00000014418) #29	CFAP410 (ENSODEG00000012840) #30	TRPM2 (ENSODEG00000013043) #31	LRRC3 (ENSODEG00000020091) #32	DSCAM (ENSODEG00000012858)	BACE2 (ENSODEG00000013570)	ENSODEG00000014232	ENSODEG00000013917	TMPRSS2 (ENSODEG00000013358)	RIPK4 (ENSODEG00000013779)	PRDM15 (ENSODEG00000013112)	C2CD2 (ENSODEG00000014616)
Guinea pig	MODERN SPECIES	90	ADARB1 (ENSCPOG00000022969)	SLX9 (ENSCPOG00000036519)	ITGB2 (ENSCPOG00000025922)	PTTG1IP (ENSCPOG00000023250)	SUMO3 (ENSCPOG00000025203)	UBE2G2 (ENSCPOG00000035970)	ENSCPOG00000037876 #35	ENSCPOG00000032969 #35	ENSCPOG00000038786 #35	ENSCPOG00000034347 #35	TSPEAR (ENSCPOG00000004362) #33	ENSCPOG00000036402 #35	PDXK (ENSCPOG00000039719) #19	CSTB (ENSCPOG00000031855) #20	RRP1 (ENSCPOG00000038986) #21	AGPAT3 (ENSCPOG00000032718) #22	TRAPPC10 (ENSCPOG00000011117) #23	PWP2 (ENSCPOG00000023616) #24	GATD3 (ENSCPOG00000011419) #25	DNMT3L (ENSCPOG00000004070) #27	AIRE (ENSCPOG00000019868) #28	PFKL (ENSCPOG00000019438) #29	CFAP410 (ENSCPOG00000009611) #30	TRPM2 (ENSCPOG00000023512) #31	LRRC3 (ENSCPOG00000030436) #32	PCP4 (ENSCPOG00000039173)	DSCAM (ENSCPOG00000005367)	BACE2 (ENSCPOG00000007403)	ENSCPOG00000025373	ENSCPOG00000013108	ENSCPOG00000021489
Naked mole-rat female	MODERN SPECIES	11	SLX9 (ENSHGLG00000045493)	ITGB2 (ENSHGLG00000013472)	ENSHGLG00000049629	PTTG1IP (ENSHGLG00000033185)	ENSHGLG00000037860	ENSHGLG00000009258	ENSHGLG00000014199 #33	ENSHGLG00000005505 #35	ENSHGLG00000043957	ENSHGLG00000038544 #35	ENSHGLG00000007283	ENSHGLG00000015985	ENSHGLG00000046004 #19	CSTB (ENSHGLG00000047009) #20	RRP1 (ENSHGLG00000050109) #21	AGPAT3 (ENSHGLG00000048529) #22	TRAPPC10 (ENSHGLG00000013176) #23	PWP2 (ENSHGLG00000017401) #24	ENSHGLG00000018104 #25	ENSHGLG00000013877 #26	ENSHGLG00000009448 #27	AIRE (ENSHGLG00000016716) #28	PFKL (ENSHGLG00000017234) #29	ENSHGLG00000016027 #30	TRPM2 (ENSHGLG00000018785) #31	ENSHGLG00000042683 #32	PCP4 (ENSHGLG00000043480)	ENSHGLG00000005193	ENSHGLG00000008616	ENSHGLG00000006993	ENSHGLG00000041834
Rodentia_B	ANCESTRAL SPECIES	2	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505.x #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000155183 #35	ENSGT00940000161526.b	ENSGT00940000158193	ENSGT00950000182895.a.b.j
Myomorpha	ANCESTRAL SPECIES	14	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505.x #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000155183 #35	ENSGT00940000161526.b	ENSGT00940000158193	ENSGT00950000182895.a.b.j
Muroidea	ANCESTRAL SPECIES	11	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505.x #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000155183 #35	ENSGT00940000161526.b	ENSGT00940000158193	ENSGT00950000182895.a.b.j
Muroidea_A	ANCESTRAL SPECIES	8	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505.x #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989.t #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000155183.e #35	ENSGT00940000161526.b	ENSGT00940000155183.f #35	ENSGT00940000158193
Murinae	ANCESTRAL SPECIES	18	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505.x #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989.t #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT01050000248522	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000155183.e #35	ENSGT00940000161526.b	ENSGT00940000155183.f #35	ENSGT00940000158193
Mus	ANCESTRAL SPECIES	15	ENSGT00950000183216.d.j.b.a	ENSGT00940000153523.b.b	ENSGT00950000183216.d.j.b.b	ENSGT00940000162084	ENSGT00940000159972	ENSGT00390000003207	ENSGT00940000162117	ENSGT00940000162852.a	ENSGT01030000234635.a.a.a.b	ENSGT00940000158035	ENSGT00940000154227.b	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT01050000248522	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00940000161526.b.r.b.b	ENSGT00940000155183.e.c #35	ENSGT00940000155183.f.a #35	ENSGT00940000155183.e.d.a #35	ENSGT00510000047718 #33
Mus_A	ANCESTRAL SPECIES	11	ENSGT00950000183216.d.j.b.a	ENSGT00940000153523.b.b	ENSGT00950000183216.d.j.b.b	ENSGT00940000162084	ENSGT00940000159972	ENSGT00390000003207	ENSGT00940000162117	ENSGT00940000162852.a	ENSGT01030000234635.a.a.a.b	ENSGT00940000158035	ENSGT00940000154227.b	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT01050000248522	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00940000155183.e.c.b.a #35	ENSGT00940000155183.e.c.b.b.a #35	ENSGT00510000047718 #33	ENSGT00940000158193	ENSGT00950000182895.a.b.j
Mus_B	ANCESTRAL SPECIES	10	ENSGT00950000183216.d.j.b.a	ENSGT00940000153523.b.b	ENSGT00950000183216.d.j.b.b	ENSGT00940000162084	ENSGT00940000159972	ENSGT00390000003207	ENSGT00940000162117	ENSGT00940000162852.a	ENSGT01030000234635.a.a.a.b	ENSGT00940000158035	ENSGT00940000154227.b	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT01050000248522	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977	ENSGT01090000259987.a.a.a.c
Mouse	MODERN SPECIES	1	Or7a42 (ENSMUSG00000094080)	Or7a38 (ENSMUSG00000094673)	Or7a39 (ENSMUSG00000062873)	Or7c70 (ENSMUSG00000051190)	Slc1a6 (ENSMUSG00000005357)	Ccdc105 (ENSMUSG00000078442)	Casp14 (ENSMUSG00000005355)	Or1i2 (ENSMUSG00000071185)	Syde1 (ENSMUSG00000032714)	Ilvbl (ENSMUSG00000032763)	Or10b1 (ENSMUSG00000107822)	Pdxk (ENSMUSG00000032788) #19	Cstb (ENSMUSG00000005054) #20	Rrp1 (ENSMUSG00000061032) #21	Gm56820 (ENSMUSG00000118646)	Agpat3 (ENSMUSG00000001211) #22	Trappc10 (ENSMUSG00000000374) #23	Pwp2 (ENSMUSG00000032834) #24	Gatd3a (ENSMUSG00000053329) #25	Icosl (ENSMUSG00000000732) #26	Dnmt3l (ENSMUSG00000000730) #27	Aire (ENSMUSG00000000731) #28	Pfkl (ENSMUSG00000020277) #29	Cfap410 (ENSMUSG00000020284) #30	Trpm2 (ENSMUSG00000009292) #31	Lrrc3 (ENSMUSG00000051652) #32	Gm3285 (ENSMUSG00000111915) #35	Gm10318 (ENSMUSG00000071195) #35	Gm36176 (ENSMUSG00000112653) #35	Krtap10-10 (ENSMUSG00000112223) #35	Krtap10-4 (ENSMUSG00000069582) #35
Mus_C	ANCESTRAL SPECIES	7	ENSGT00940000163952.a.d	ENSGT00940000153523.b.a	ENSGT00950000183216.d.j.b.a	ENSGT00940000153523.b.b	ENSGT00940000162084	ENSGT00940000159972	ENSGT00390000003207	ENSGT00940000162117	ENSGT00940000162852.a	ENSGT01030000234635.a.a.a.b	ENSGT00940000158035	ENSGT00940000154227.b	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00940000155183.e.c.b.a #35	ENSGT00510000047718 #33	ENSGT00940000155183.e.d.a.b #35	ENSGT00940000155183.f.a #35	ENSGT00940000155183.e.c.b.b.b #35
Steppe mouse	MODERN SPECIES	3068	Or7a36 (ENSMSIG00000000611)	Or7a37 (ENSMSIG00000000592)	ENSMSIG00000000580	Or7c70 (ENSMSIG00000000575)	Slc1a6 (ENSMSIG00000000543)	Ccdc105 (ENSMSIG00000000509)	Casp14 (ENSMSIG00000000458)	ENSMSIG00000000436	Or1i2 (ENSMSIG00000000403)	Syde1 (ENSMSIG00000000382)	Ilvbl (ENSMSIG00000000223)	Or10b1 (ENSMSIG00000000154)	Pdxk (ENSMSIG00000000114) #19	Cstb (ENSMSIG00000026515) #20	Rrp1 (ENSMSIG00000026489) #21	Agpat3 (ENSMSIG00000026402) #22	Trappc10 (ENSMSIG00000026358) #23	Pwp2 (ENSMSIG00000026339) #24	Gatd3a (ENSMSIG00000026316) #25	Icosl (ENSMSIG00000026290) #26	Dnmt3l (ENSMSIG00000026239) #27	Aire (ENSMSIG00000025315) #28	Pfkl (ENSMSIG00000025294) #29	ENSMSIG00000025258	Trpm2 (ENSMSIG00000025139) #31	ENSMSIG00000025134 #32	Tspear (ENSMSIG00000025116) #33	ENSMSIG00000025108 #35	Gm19668 (ENSMSIG00000025103) #35	Gm9639 (ENSMSIG00000025102) #35
spretus	MODERN SPECIES	1	Or7a37 (MGP_SPRETEiJ_G0016335)	Or7a39 (MGP_SPRETEiJ_G0016334)	MGP_SPRETEiJ_G0016332	MGP_SPRETEiJ_G0016333	Or7c70 (MGP_SPRETEiJ_G0016331)	Slc1a6 (MGP_SPRETEiJ_G0016330)	Ccdc105 (MGP_SPRETEiJ_G0016329)	Casp14 (MGP_SPRETEiJ_G0016328)	Or1i2 (MGP_SPRETEiJ_G0016327)	Syde1 (MGP_SPRETEiJ_G0016326)	Ilvbl (MGP_SPRETEiJ_G0016325)	MGP_SPRETEiJ_G0016324	Pdxk (MGP_SPRETEiJ_G0016323) #19	Cstb (MGP_SPRETEiJ_G0016322) #20	Rrp1 (MGP_SPRETEiJ_G0016321) #21	Agpat3 (MGP_SPRETEiJ_G0016320) #22	Trappc10 (MGP_SPRETEiJ_G0016319) #23	Pwp2 (MGP_SPRETEiJ_G0016318) #24	Gatd3a (MGP_SPRETEiJ_G0016317) #25	Icosl (MGP_SPRETEiJ_G0016316) #26	Dnmt3l (MGP_SPRETEiJ_G0016315) #27	Aire (MGP_SPRETEiJ_G0016314) #28	Pfkl (MGP_SPRETEiJ_G0016313) #29	Cfap410 (MGP_SPRETEiJ_G0016312) #30	Trpm2 (MGP_SPRETEiJ_G0016311) #31	Lrrc3 (MGP_SPRETEiJ_G0016310) #32	MGP_SPRETEiJ_G0016309 #35	Tspear (MGP_SPRETEiJ_G0016308) #33	MGP_SPRETEiJ_G0016307 #35	Gm19668 (MGP_SPRETEiJ_G0016306) #35	Gm10100 (MGP_SPRETEiJ_G0016305)
Ryukyu mouse	MODERN SPECIES	1	Or7a36 (MGP_CAROLIEiJ_G0015522)	Or7a37 (MGP_CAROLIEiJ_G0015521)	MGP_CAROLIEiJ_G0015519	Or7a39 (MGP_CAROLIEiJ_G0015520)	Or7c70 (MGP_CAROLIEiJ_G0015518)	Slc1a6 (MGP_CAROLIEiJ_G0015517)	Ccdc105 (MGP_CAROLIEiJ_G0015516)	Casp14 (MGP_CAROLIEiJ_G0015515)	Or1i2 (MGP_CAROLIEiJ_G0015514)	Syde1 (MGP_CAROLIEiJ_G0015513)	Ilvbl (MGP_CAROLIEiJ_G0015512)	MGP_CAROLIEiJ_G0015511	Pdxk (MGP_CAROLIEiJ_G0015510) #19	Cstb (MGP_CAROLIEiJ_G0015509) #20	Rrp1 (MGP_CAROLIEiJ_G0015508) #21	Agpat3 (MGP_CAROLIEiJ_G0015507) #22	Trappc10 (MGP_CAROLIEiJ_G0015506) #23	Pwp2 (MGP_CAROLIEiJ_G0015505) #24	Gatd3a (MGP_CAROLIEiJ_G0015504) #25	Icosl (MGP_CAROLIEiJ_G0015503) #26	Dnmt3l (MGP_CAROLIEiJ_G0015502) #27	Aire (MGP_CAROLIEiJ_G0015501) #28	Pfkl (MGP_CAROLIEiJ_G0015500) #29	Cfap410 (MGP_CAROLIEiJ_G0015499) #30	MGP_CAROLIEiJ_G0015498 #31	Lrrc3 (MGP_CAROLIEiJ_G0015497) #32	Tspear (MGP_CAROLIEiJ_G0015496) #33	Krtap10-10 (MGP_CAROLIEiJ_G0015495) #35	MGP_CAROLIEiJ_G0015494 #35	Gm19668 (MGP_CAROLIEiJ_G0015493) #35	MGP_CAROLIEiJ_G0015492 #35
Shrew mouse	MODERN SPECIES	22	Or7a36 (MGP_PahariEiJ_G0030935)	Or7a37 (MGP_PahariEiJ_G0030934)	MGP_PahariEiJ_G0030932	Or7a39 (MGP_PahariEiJ_G0030933)	Or7c70 (MGP_PahariEiJ_G0030931)	MGP_PahariEiJ_G0030930	Slc1a6 (MGP_PahariEiJ_G0030929)	Ccdc105 (MGP_PahariEiJ_G0030928)	Casp14 (MGP_PahariEiJ_G0030927)	Or1i2 (MGP_PahariEiJ_G0030926)	Syde1 (MGP_PahariEiJ_G0030925)	Ilvbl (MGP_PahariEiJ_G0030924)	Pdxk (MGP_PahariEiJ_G0030923) #19	Cstb (MGP_PahariEiJ_G0030922) #20	Rrp1 (MGP_PahariEiJ_G0030921) #21	Agpat3 (MGP_PahariEiJ_G0030920) #22	Trappc10 (MGP_PahariEiJ_G0030919) #23	Pwp2 (MGP_PahariEiJ_G0030918) #24	Gatd3a (MGP_PahariEiJ_G0030917) #25	MGP_PahariEiJ_G0030916 #26	Dnmt3l (MGP_PahariEiJ_G0030915) #27	Aire (MGP_PahariEiJ_G0030914) #28	Pfkl (MGP_PahariEiJ_G0030913) #29	Cfap410 (MGP_PahariEiJ_G0030912) #30	MGP_PahariEiJ_G0030911 #31	Lrrc3 (MGP_PahariEiJ_G0030910) #32	Tspear (MGP_PahariEiJ_G0030909) #33	MGP_PahariEiJ_G0030908 #35	MGP_PahariEiJ_G0030907 #35	MGP_PahariEiJ_G0030906 #35	MGP_PahariEiJ_G0030905
Rat	MODERN SPECIES	12	Slc37a1 (ENSRNOG00000001169)	Pde9a (ENSRNOG00000001174) #7	Wdr4 (ENSRNOG00000001181) #8	Ndufv3 (ENSRNOG00000001182) #9	Pknox1 (ENSRNOG00000001184) #10	Cbs (ENSRNOG00000029528) #12	U2af1 (ENSRNOG00000045860) #13	Sik1 (ENSRNOG00000001189) #15	Hsf2bp (ENSRNOG00000001193) #16	Rrp1b (ENSRNOG00000001194) #18	RGD1566085 (ENSRNOG00000068407) #19	Pdxk (ENSRNOG00000049937) #19	Cstb (ENSRNOG00000001201) #20	Rrp1 (ENSRNOG00000001203) #21	Gm56820 (ENSRNOG00000062695)	Agpat3 (ENSRNOG00000001205) #22	Trappc10 (ENSRNOG00000023210) #23	Pwp2 (ENSRNOG00000001210) #24	Gatd3a (ENSRNOG00000001211) #25	Icoslg (ENSRNOG00000023109) #26	Dnmt3l (ENSRNOG00000001212) #27	Aire (ENSRNOG00000001213) #28	Pfkl (ENSRNOG00000001214) #29	Cfap410 (ENSRNOG00000001215) #30	Trpm2 (ENSRNOG00000001216) #31	Lrrc3 (ENSRNOG00000001217) #32	Tspear (ENSRNOG00000001219) #33	LOC100365646 (ENSRNOG00000001218) #35	LOC120098854 (ENSRNOG00000067436) #35	LOC120098855 (ENSRNOG00000042329) #35	LOC690415 (ENSRNOG00000069553) #35
Cricetidae	ANCESTRAL SPECIES	9	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505.x #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989.t #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000155183.e.a.b #35	ENSGT00940000161526.b	ENSGT00940000155183.f #35	ENSGT00940000158193
Cricetidae_B	ANCESTRAL SPECIES	12	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505.x #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989.t #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977	ENSGT01090000259987.a.a.a.c
Prairie vole	MODERN SPECIES	352	Rsph1 (ENSMOCG00000003255)	Slc37a1 (ENSMOCG00000013618)	Pde9a (ENSMOCG00000012568) #7	Wdr4 (ENSMOCG00000022127) #8	ENSMOCG00000021683 #9	Pknox1 (ENSMOCG00000000944) #10	Cbs (ENSMOCG00000010781) #12	U2af1 (ENSMOCG00000003736) #13	Cryaa (ENSMOCG00000001790) #14	Sik1 (ENSMOCG00000000510) #15	Hsf2bp (ENSMOCG00000006152) #16	Rrp1b (ENSMOCG00000001117) #18	Pdxk (ENSMOCG00000006016) #19	Cstb (ENSMOCG00000022035) #20	Rrp1 (ENSMOCG00000015687) #21	ENSMOCG00000010991 #22	Trappc10 (ENSMOCG00000006082) #23	Pwp2 (ENSMOCG00000003844) #24	Gatd3a (ENSMOCG00000019921) #25	Icosl (ENSMOCG00000018242) #26	Dnmt3l (ENSMOCG00000022517) #27	Aire (ENSMOCG00000008071) #28	ENSMOCG00000013045 #29	Cfap410 (ENSMOCG00000020426) #30	Trpm2 (ENSMOCG00000019856) #31	Lrrc3 (ENSMOCG00000017485) #32	ENSMOCG00000016139 #35	ENSMOCG00000015079 #35	ENSMOCG00000014262 #35	ENSMOCG00000013216 #35	ENSMOCG00000004341
Northern American deer mouse	MODERN SPECIES	13	Pde9a (ENSPEMG00000023664) #7	Wdr4 (ENSPEMG00000022550) #8	Ndufv3 (ENSPEMG00000022595) #9	Pknox1 (ENSPEMG00000021492) #10	Cbs (ENSPEMG00000021739) #12	U2af1 (ENSPEMG00000021041) #13	ENSPEMG00000027416	Cryaa (ENSPEMG00000021591) #14	Sik1 (ENSPEMG00000024129) #15	Hsf2bp (ENSPEMG00000021638) #16	Rrp1b (ENSPEMG00000022490) #18	ENSPEMG00000023225 #19	ENSPEMG00000030967 #19	Cstb (ENSPEMG00000025261) #20	Rrp1 (ENSPEMG00000018421) #21	Agpat3 (ENSPEMG00000016159) #22	Trappc10 (ENSPEMG00000023811) #23	Pwp2 (ENSPEMG00000009968) #24	Gatd3a (ENSPEMG00000023416) #25	ENSPEMG00000007525 #26	Dnmt3l (ENSPEMG00000009203) #27	Aire (ENSPEMG00000022217) #28	Pfkl (ENSPEMG00000022772) #29	Cfap410 (ENSPEMG00000022711) #30	Trpm2 (ENSPEMG00000012456) #31	Lrrc3 (ENSPEMG00000030505) #32	Tspear (ENSPEMG00000016261) #33	ENSPEMG00000023368 #35	ENSPEMG00000021662 #35	ENSPEMG00000029694 #35	ENSPEMG00000026871 #35
Cricetinae	ANCESTRAL SPECIES	24	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505.x #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989.t #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000155183.e.a.b.a.b #35	ENSGT00940000161526.b	ENSGT00940000155183.f #35	ENSGT00940000155183.e.a.b.a.a #35
Golden Hamster	MODERN SPECIES	641	Tmprss3 (ENSMAUG00000020969)	Ubash3a (ENSMAUG00000019578)	Rsph1 (ENSMAUG00000014285)	Slc37a1 (ENSMAUG00000021076)	Pde9a (ENSMAUG00000001943) #7	Wdr4 (ENSMAUG00000020696) #8	Ndufv3 (ENSMAUG00000020188) #9	Pknox1 (ENSMAUG00000015669) #10	Cbs (ENSMAUG00000020960) #12	U2af1 (ENSMAUG00000020528) #13	Cryaa (ENSMAUG00000017095) #14	Sik1 (ENSMAUG00000018473) #15	Hsf2bp (ENSMAUG00000018607) #16	Rrp1b (ENSMAUG00000021508) #18	Rrp1 (ENSMAUG00000017653) #21	Agpat3 (ENSMAUG00000019017) #22	Trappc10 (ENSMAUG00000021971) #23	Pwp2 (ENSMAUG00000020265) #24	Icosl (ENSMAUG00000019140) #26	Dnmt3l (ENSMAUG00000019680) #27	Aire (ENSMAUG00000021943) #28	Pfkl (ENSMAUG00000017741) #29	Cfap410 (ENSMAUG00000018378) #30	Trpm2 (ENSMAUG00000005011) #31	Lrrc3 (ENSMAUG00000021907) #32	Tspear (ENSMAUG00000011883) #33	ENSMAUG00000012939 #35	ENSMAUG00000007884	ENSMAUG00000021981	ENSMAUG00000002462	ENSMAUG00000021040 #35
Chinese hamster chok1gshd	MODERN SPECIES	204							ENSCGRG00001003985 #16	ENSCGRG00001010889 #18	ENSCGRG00001019133 #19	ENSCGRG00001016759 #19	ENSCGRG00001005047 #19	ENSCGRG00001023882 #18	ENSCGRG00001021534 #16	Cstb (ENSCGRG00001023703) #20	Rrp1 (ENSCGRG00001011920) #21	Agpat3 (ENSCGRG00001023999) #22	Trappc10 (ENSCGRG00001019791) #23	Pwp2 (ENSCGRG00001020074) #24	Gatd3a (ENSCGRG00001019921) #25	Icosl (ENSCGRG00001009599) #26	Dnmt3l (ENSCGRG00001016841) #27	Aire (ENSCGRG00001021441) #28	Pfkl (ENSCGRG00001015753) #29	Cfap410 (ENSCGRG00001007084) #30	Trpm2 (ENSCGRG00001014379) #31	Lrrc3 (ENSCGRG00001011603) #32	Tspear (ENSCGRG00001017931) #33	ENSCGRG00001013139 #35	ENSCGRG00001017382 #35	Gm36176 (ENSCGRG00001022992) #35	ENSCGRG00001000038 #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	557	Rsph1 (ENSNGAG00000005022)	Slc37a1 (ENSNGAG00000022440)	Pde9a (ENSNGAG00000014370) #7	Wdr4 (ENSNGAG00000017117) #8	Ndufv3 (ENSNGAG00000011220) #9	Pknox1 (ENSNGAG00000015912) #10	Cbs (ENSNGAG00000011354) #12	U2af1 (ENSNGAG00000021641) #13	Cryaa (ENSNGAG00000024156) #14	Sik1 (ENSNGAG00000015397) #15	Hsf2bp (ENSNGAG00000002647) #16	Rrp1b (ENSNGAG00000021073) #18	Pdxk (ENSNGAG00000011007) #19	Cstb (ENSNGAG00000001985) #20	ENSNGAG00000022344 #21	Agpat3 (ENSNGAG00000023781) #22	ENSNGAG00000020131 #23	Pwp2 (ENSNGAG00000021106) #24	Gatd3a (ENSNGAG00000023649) #25	ENSNGAG00000007536 #26	Dnmt3l (ENSNGAG00000004497) #27	Aire (ENSNGAG00000006411) #28	Pfkl (ENSNGAG00000023632) #29	Cfap410 (ENSNGAG00000008743) #30	Trpm2 (ENSNGAG00000015763) #31	Lrrc3 (ENSNGAG00000024059) #32	Tspear (ENSNGAG00000022570) #33	ENSNGAG00000012871 #35	ENSNGAG00000023342 #35	ENSNGAG00000000805 #35
Lesser Egyptian jerboa	MODERN SPECIES	54	Slc37a1 (ENSJJAG00000009176)	Pde9a (ENSJJAG00000022814) #7	Wdr4 (ENSJJAG00000016232) #8	ENSJJAG00000012928 #9	ENSJJAG00000022210	Pknox1 (ENSJJAG00000003326) #10	Cbs (ENSJJAG00000019675) #12	U2af1 (ENSJJAG00000000485) #13	Cryaa (ENSJJAG00000008890) #14	Sik1 (ENSJJAG00000021978) #15	Hsf2bp (ENSJJAG00000011558) #16	Rrp1b (ENSJJAG00000021279) #18	Pdxk (ENSJJAG00000016609) #19	ENSJJAG00000019836 #20	Rrp1 (ENSJJAG00000018886) #21	Agpat3 (ENSJJAG00000019770) #22	Lbh (ENSJJAG00000023694)	Lclat1 (ENSJJAG00000015441) ##22	Capn13 (ENSJJAG00000015680)	Galnt14 (ENSJJAG00000020390)	Ehd3 (ENSJJAG00000013415)	Xdh (ENSJJAG00000017980)
Lagomorpha	ANCESTRAL SPECIES																	ENSGT00950000182836.b.b.b.a #22
Pika	MODERN SPECIES	2592																AGPAT3 (ENSOPRG00000013786) #22
Tree shrew	MODERN SPECIES	8189																AGPAT3 (ENSTBEG00000011207) #22
Atlantogenata	ANCESTRAL SPECIES	92	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826.hb #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000163845	ENSGT00940000158579	ENSGT00940000158193	ENSGT00950000182895.a.b
Afrotheria	ANCESTRAL SPECIES	109	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826.hb #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000158579	ENSGT00940000158193	ENSGT00950000182895.a.b	ENSGT00390000004977
Afrotheria_a	ANCESTRAL SPECIES	115	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826.hb #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807 #30	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000158579	ENSGT00940000158193	ENSGT00950000182895.a.b	ENSGT00390000004977
Elephant	MODERN SPECIES	513	SLC37A1 (ENSLAFG00000005842)	PDE9A (ENSLAFG00000028539) #7	WDR4 (ENSLAFG00000021675) #8	NDUFV3 (ENSLAFG00000002098) #9	PKNOX1 (ENSLAFG00000011377) #10	CBS (ENSLAFG00000009950) #12	U2AF1 (ENSLAFG00000011460) #13	CRYAA (ENSLAFG00000017392) #14	ENSLAFG00000031722	SIK1 (ENSLAFG00000000960) #15	HSF2BP (ENSLAFG00000000763) #16	RRP1B (ENSLAFG00000000766) #18	PDXK (ENSLAFG00000010740) #19	CSTB (ENSLAFG00000002664) #20	RRP1 (ENSLAFG00000022901) #21	AGPAT3 (ENSLAFG00000018615) #22	TRAPPC10 (ENSLAFG00000003863) #23	PWP2 (ENSLAFG00000003871) #24	GATD3 (ENSLAFG00000003876) #25	ENSLAFG00000016007 #26	DNMT3L (ENSLAFG00000031621) #27	AIRE (ENSLAFG00000008582) #28	PFKL (ENSLAFG00000021471) #29	CFAP410 (ENSLAFG00000000609) #30	TRPM2 (ENSLAFG00000007900) #31	LRRC3 (ENSLAFG00000005181) #32	TSPEAR (ENSLAFG00000012959) #33	ENSLAFG00000020961	ENSLAFG00000012968	ENSLAFG00000003471	ENSLAFG00000032616
Hyrax	MODERN SPECIES	9053																AGPAT3 (ENSPCAG00000015260) #22
Tenrec	MODERN SPECIES	5135																AGPAT3 (ENSETEG00000000898) #22
Xenarthra	ANCESTRAL SPECIES	1177																ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25
Armadillo	MODERN SPECIES	4100																ENSDNOG00000038285 #22	TRAPPC10 (ENSDNOG00000012294) #23	PWP2 (ENSDNOG00000012128) #24	GATD3 (ENSDNOG00000024270) #25
Marsupialia	DUPLICATION
Marsupialia	ANCESTRAL SPECIES	23	ENSGT00940000160841	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a.a #22	ENSGT00390000003873 #23	ENSGT00530000063946.a	ENSGT00940000155551	ENSGT00940000156294	ENSGT00940000153577.A	ENSGT00510000046499	ENSGT00940000159255	ENSGT00940000159602	ENSGT00940000159870	ENSGT00940000154497.A	ENSGT00390000010669	ENSGT01100000263796	ENSGT00940000154497.B	ENSGT00940000161679	ENSGT00390000014606
Marsupialia_b	ANCESTRAL SPECIES	3	ENSGT00940000160841	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a.a #22	ENSGT00500000044950	ENSGT00940000156253	ENSGT00940000158923	ENSGT00950000183107.a.b.a	ENSGT00950000182802.D	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000160964	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00950000183004.a.b.a.b	ENSGT00940000155207.a.b	ENSGT00940000159908
Diprotodontia	ANCESTRAL SPECIES	32	ENSGT00940000160841	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a.a #22	ENSGT00500000044950	ENSGT00940000156253	ENSGT00940000158923	ENSGT00950000183107.a.b.a	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000160964	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00950000183004.a.b.a.b	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00870000136508.c.b
Diprotodontia_a	ANCESTRAL SPECIES	31	ENSGT00940000160841	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159.a #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821.a #18	ENSGT00390000003874 #19	ENSGT00940000154826.bc #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a.a #22	ENSGT00500000044950	ENSGT00940000156253	ENSGT00940000158923	ENSGT00950000183107.a.b.a	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000160964.i	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00950000183004.a.b.a.b	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00870000136508.c.b
Common wonbat	MODERN SPECIES	1120	PDE9A (ENSVURG00010023297) #7	WDR4 (ENSVURG00010023283) #8	ENSVURG00010023279 #9	PKNOX1 (ENSVURG00010023276) #10	CBS (ENSVURG00010023271) #12	U2AF1 (ENSVURG00010023269) #13	ENSVURG00010023267 #14	SIK1 (ENSVURG00010023263) #15	ENSVURG00010023260	HSF2BP (ENSVURG00010023259) #16	RRP1B (ENSVURG00010023255) #18	ENSVURG00010023251	PDXK (ENSVURG00010023250) #19	ENSVURG00010023249 #20	ENSVURG00010023247 #21	ENSVURG00010023246 #22	PSMG1 (ENSVURG00010023242)	GRIK1 (ENSVURG00010022936)	BACH1 (ENSVURG00010022808)	ENSVURG00010022806	BRWD1 (ENSVURG00010020972)	GET1 (ENSVURG00010020815)	LCA5L (ENSVURG00010020810)	SH3BGR (ENSVURG00010020806)	ENSVURG00010020804	ENSVURG00010020802	PCP4 (ENSVURG00010020798)	DSCAM (ENSVURG00010020750)	ENSVURG00010020735	BACE2 (ENSVURG00010020728)	FAM3B (ENSVURG00010020723)
koala	MODERN SPECIES	249	SLC37A1 (ENSPCIG00000003787)	PDE9A (ENSPCIG00000002353) #7	WDR4 (ENSPCIG00000002223) #8	ENSPCIG00000002205 #9	PKNOX1 (ENSPCIG00000007865) #10	CBS (ENSPCIG00000028095) #12	U2AF1 (ENSPCIG00000028098) #13	ENSPCIG00000028100 #14	ENSPCIG00000036347	SIK1 (ENSPCIG00000008860) #15	HSF2BP (ENSPCIG00000015503) #16	RRP1B (ENSPCIG00000015513) #18	PDXK (ENSPCIG00000015519) #19	ENSPCIG00000015522 #20	ENSPCIG00000015523 #21	ENSPCIG00000028254 #22	PSMG1 (ENSPCIG00000028255)	GRIK1 (ENSPCIG00000028259)	BACH1 (ENSPCIG00000028263)	BRWD1 (ENSPCIG00000028266)	ENSPCIG00000033358	ENSPCIG00000028274	LCA5L (ENSPCIG00000028277)	SH3BGR (ENSPCIG00000028279)	ENSPCIG00000014296	ENSPCIG00000014298	PCP4 (ENSPCIG00000028281)	DSCAM (ENSPCIG00000028291)
Tasmanian devil	MODERN SPECIES	2	UBASH3A (ENSSHAG00000015152)	SLC37A1 (ENSSHAG00000015601)	PDE9A (ENSSHAG00000016254) #7	WDR4 (ENSSHAG00000016450) #8	ENSSHAG00000026320 #9	PKNOX1 (ENSSHAG00000016846) #10	CBS (ENSSHAG00000017100) #12	U2AF1 (ENSSHAG00000017185) #13	CRYAA (ENSSHAG00000017366) #14	SIK1 (ENSSHAG00000017494) #15	HSF2BP (ENSSHAG00000017635) #16	RRP1B (ENSSHAG00000017789) #18	PDXK (ENSSHAG00000017888) #19	CSTB (ENSSHAG00000025634) #20	ENSSHAG00000010304 #21	ENSSHAG00000008796 #22	ENSSHAG00000008206	ENSSHAG00000006972	ENSSHAG00000006419	ENSSHAG00000002554	ENSSHAG00000032232	GET1 (ENSSHAG00000024410)	LCA5L (ENSSHAG00000002464)	SH3BGR (ENSSHAG00000004155)	B3GALT5 (ENSSHAG00000026882)	PCP4 (ENSSHAG00000010796)	DSCAM (ENSSHAG00000009089)	BACE2 (ENSSHAG00000005092)	TMPRSS2 (ENSSHAG00000004952)	ENSSHAG00000001558	ENSSHAG00000002844
Opossum	MODERN SPECIES	3	ENSMODG00000021023	PDE9A (ENSMODG00000025366) #7	WDR4 (ENSMODG00000021024) #8	ENSMODG00000021025 #9	PKNOX1 (ENSMODG00000021026) #10	CBS (ENSMODG00000021028) #12	U2AF1 (ENSMODG00000029158) #13	CRYAA (ENSMODG00000021030) #14	SIK1 (ENSMODG00000021031) #15	HSF2BP (ENSMODG00000021032) #16	RRP1B (ENSMODG00000021033) #18	ENSMODG00000037340 #19	PDXK (ENSMODG00000021034) #19	CSTB (ENSMODG00000021035) #20	ENSMODG00000051346 #21	AGPAT3 (ENSMODG00000021037) #22	TRAPPC10 (ENSMODG00000021039) #23	SCAF4 (ENSMODG00000021040)	SOD1 (ENSMODG00000021041)	TIAM1 (ENSMODG00000021043)	ENSMODG00000050855	ENSMODG00000021047	SETD4 (ENSMODG00000021048)	RUNX1 (ENSMODG00000021051)	ENSMODG00000021052	ENSMODG00000041490	RCAN1 (ENSMODG00000021053)	KCNE1 (ENSMODG00000025354)	C21orf140 (ENSMODG00000025353)	ENSMODG00000046807	KCNE2 (ENSMODG00000025352)
Marsupialia	ANCESTRAL SPECIES																	ENSGT00950000182836.b.b.b.a.b #22
Marsupialia_b	ANCESTRAL SPECIES	10	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845	ENSGT00500000044921.b	ENSGT01100000263542.A	ENSGT00390000007888.b	ENSGT00940000157337	ENSGT00390000007888.a	ENSGT00420000029769.a	ENSGT00940000160695	ENSGT00940000155365.a.a	ENSGT00390000018904.yb	ENSGT00940000157537	ENSGT00950000182836.b.b.b.a.b #22	ENSGT00390000016277.a	ENSGT00390000012495	ENSGT00390000012832	ENSGT00940000159099	ENSGT00390000001827	ENSGT00390000008295.b	ENSGT00940000157911	ENSGT00510000048725	ENSGT00940000160520	ENSGT00390000003114.e.b.b	ENSGT00940000157880	ENSGT00940000155488	ENSGT00940000158391	ENSGT00940000157527	ENSGT00940000157131.b
Diprotodontia	ANCESTRAL SPECIES	18	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845	ENSGT00500000044921.b	ENSGT01100000263542.A	ENSGT00390000007888.b	ENSGT00940000157337	ENSGT00390000007888.a	ENSGT00420000029769.a	ENSGT00940000160695	ENSGT00940000155365.a.a	ENSGT00390000018904.yb	ENSGT00940000157537	ENSGT00950000182836.b.b.b.a.b #22	ENSGT00390000016277.a	ENSGT00390000012495	ENSGT00390000012832	ENSGT00940000159099	ENSGT00390000001827	ENSGT00390000008295.b	ENSGT00940000157911	ENSGT00510000048725	ENSGT00940000160520	ENSGT00390000003114.e.b.b	ENSGT00940000157880	ENSGT00940000155488	ENSGT00940000158391	ENSGT00940000157527	ENSGT00940000157131.b
Diprotodontia_a	ANCESTRAL SPECIES	20	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845	ENSGT00500000044921.b	ENSGT01100000263542.A	ENSGT00390000007888.b.b	ENSGT00940000157337	ENSGT00390000007888.a.a	ENSGT00420000029769.a	ENSGT00940000160695	ENSGT00940000155365.a.a	ENSGT00390000018904.yb	ENSGT00940000157537	ENSGT00950000182836.b.b.b.a.b #22	ENSGT00390000016277.a	ENSGT00390000012495	ENSGT00390000012832	ENSGT00940000159099	ENSGT00390000001827	ENSGT00390000008295.b	ENSGT00940000157911	ENSGT00510000048725	ENSGT00940000160520	ENSGT00390000003114.e.b.b	ENSGT00940000157880	ENSGT00940000155488	ENSGT00940000158391	ENSGT00940000157527	ENSGT00940000157131.b
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1036	ENSVURG00010018752	ENSVURG00010018740	ENSVURG00010018732	ENSVURG00010018714	ENSVURG00010018701	ENSVURG00010018692	ENSVURG00010018618	ENSVURG00010018602	ENSVURG00010018595	ENSVURG00010018588	ENSVURG00010018580	ENSVURG00010018578	ENSVURG00010018576	ENSVURG00010018570	ENSVURG00010018559	ENSVURG00010018548 #22	ENSVURG00010018541	ENSVURG00010018480	ENSVURG00010018470	ENSVURG00010018438	ENSVURG00010018418	ENSVURG00010018413	ENSVURG00010018408	ENSVURG00010018401	ENSVURG00010018394	ENSVURG00010018390	ENSVURG00010018369	ENSVURG00010017255	ENSVURG00010017145
Common wonbat	MODERN SPECIES	1036	ENSVURG00010023046	ENSVURG00010023039	ENSVURG00010023036	ENSVURG00010023031	ENSVURG00010023026	ENSVURG00010023021	ENSVURG00010023007	ENSVURG00010022994	ENSVURG00010022986	ENSVURG00010022980	ENSVURG00010022973	ENSVURG00010022965	ENSVURG00010022957	ENSVURG00010022950	ENSVURG00010022941	ENSVURG00010022932 #22	ENSVURG00010022923	ENSVURG00010022890	ENSVURG00010022880	ENSVURG00010022857	ENSVURG00010022841	ENSVURG00010022838	ENSVURG00010022835	ENSVURG00010022833	ENSVURG00010022827	ENSVURG00010022813	ENSVURG00010022605	ENSVURG00010022566	TGFBR2 (ENSVURG00010022559)	ENSVURG00010022557	RBMS3 (ENSVURG00010022551)
koala	MODERN SPECIES	50	SCRN1 (ENSPCIG00000019775)	FKBP14 (ENSPCIG00000006908)	PLEKHA8 (ENSPCIG00000022307)	MTURN (ENSPCIG00000022309)	ZNRF2 (ENSPCIG00000022316)	NOD1 (ENSPCIG00000006834)	GGCT (ENSPCIG00000037416)	ENSPCIG00000032473	ENTPD3 (ENSPCIG00000003518)	ENSPCIG00000010324	GASK1A (ENSPCIG00000004107)	POMGNT2 (ENSPCIG00000017784)	SNRK (ENSPCIG00000017788)	ANO10 (ENSPCIG00000017789)	ENSPCIG00000017791	ENSPCIG00000017793 #22	ABHD5 (ENSPCIG00000017796)	TOPAZ1 (ENSPCIG00000026161)	TCAIM (ENSPCIG00000026159)	TRIM71 (ENSPCIG00000026155)	CNOT10 (ENSPCIG00000026148)	DYNC1LI1 (ENSPCIG00000026143)	CMTM6 (ENSPCIG00000026142)	CMTM7 (ENSPCIG00000026140)	CMTM8 (ENSPCIG00000026139)	GPD1L (ENSPCIG00000026138)	OSBPL10 (ENSPCIG00000017992)	STT3B (ENSPCIG00000017991)	GADL1 (ENSPCIG00000017987)	TGFBR2 (ENSPCIG00000017985)	ENSPCIG00000006109
Wallaby	MODERN SPECIES	6476																AGPAT3 (ENSMEUG00000011503) #22
Tasmanian devil	MODERN SPECIES	4	ENSSHAG00000005324	SCRN1 (ENSSHAG00000004467)	FKBP14 (ENSSHAG00000029085)	PLEKHA8 (ENSSHAG00000002747)	MTURN (ENSSHAG00000023838)	ZNRF2 (ENSSHAG00000022515)	ENSSHAG00000028562	ENSSHAG00000027969	ENSSHAG00000021130	ENSSHAG00000001591	ENSSHAG00000027107	ENSSHAG00000023966	POMGNT2 (ENSSHAG00000003748)	SNRK (ENSSHAG00000018518)	ENSSHAG00000018357	ENSSHAG00000018334 #22	ENSSHAG00000031972	ENSSHAG00000030874	ENSSHAG00000017638	ENSSHAG00000017580	ENSSHAG00000021944	ENSSHAG00000017280	DYNC1LI1 (ENSSHAG00000017026)	ENSSHAG00000027248	CMTM7 (ENSSHAG00000032359)	CMTM8 (ENSSHAG00000016796)	GPD1L (ENSSHAG00000029429)	OSBPL10 (ENSSHAG00000015717)	STT3B (ENSSHAG00000015602)	GADL1 (ENSSHAG00000013123)	TGFBR2 (ENSSHAG00000020646)
Platypus	MODERN SPECIES	9	UBASH3A (ENSOANG00000006452)	RSPH1 (ENSOANG00000006454)	SLC37A1 (ENSOANG00000006455)	PDE9A (ENSOANG00000006458) #7	WDR4 (ENSOANG00000006459) #8	ENSOANG00000006460 #9	PKNOX1 (ENSOANG00000006461) #10	CBS (ENSOANG00000006462) #12	U2AF1 (ENSOANG00000006463) #13	CRYAA (ENSOANG00000006464) #14	SIK1 (ENSOANG00000006466) #15	HSF2BP (ENSOANG00000006469) #16	RRP1B (ENSOANG00000006470) #18	PDXK (ENSOANG00000006471) #19	ENSOANG00000041552 #21	AGPAT3 (ENSOANG00000006473) #22	ENSOANG00000042993 #23	ENSOANG00000045507 #23	PWP2 (ENSOANG00000006477) #24	GATD3 (ENSOANG00000006478) #25	ENSOANG00000046692 #26	ENSOANG00000049122	DIPK2B (ENSOANG00000051110)	ENSOANG00000006481	FUNDC1 (ENSOANG00000006482)	EFHC2 (ENSOANG00000006483)	NDP (ENSOANG00000040395)	MAOB (ENSOANG00000006486)	MAOA (ENSOANG00000006490)	CASK (ENSOANG00000011267)	GPR82 (ENSOANG00000011271)
Sauria	ANCESTRAL SPECIES	2	ENSGT00940000160841	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027.n #12	ENSGT00510000047027.m #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821 #21	ENSGT00390000003874 #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00520000055625.a	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00940000155600.b	ENSGT00990000203619.A.a	ENSGT01060000248589.C
Lepidosauria	ANCESTRAL SPECIES	4	ENSGT00940000160841	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027.n #12	ENSGT00510000047027.m #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821 #21	ENSGT00390000003874 #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00520000055625.a	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00940000155600.b	ENSGT00940000160782	ENSGT00940000154443
Episquamata	ANCESTRAL SPECIES	2	ENSGT00940000160841	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027.n #12	ENSGT00510000047027.m #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821 #21	ENSGT00390000003874 #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00520000055625.a	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT01060000248589.C	ENSGT00940000155600.b	ENSGT00940000160782
Laterata	ANCESTRAL SPECIES		ENSGT00940000160841	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174.h #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027.n #12	ENSGT00510000047027.m #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821 #21	ENSGT00390000003874 #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00520000055625.a	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00950000183055.a.b	ENSGT00530000063582.a	ENSGT01060000248589.C
Common wall lizard	MODERN SPECIES	12	SLC37A1 (ENSPMRG00000022118)	PDE9A (ENSPMRG00000022131) #7	ENSPMRG00000022158 #8	ENSPMRG00000022203 #9	PKNOX1 (ENSPMRG00000022216) #10	ENSPMRG00000022227 #12	CBS (ENSPMRG00000022240) #12	U2AF1 (ENSPMRG00000022258) #13	CRYAA (ENSPMRG00000022271) #14	SIK1 (ENSPMRG00000022275) #15	ENSPMRG00000022282	HSF2BP (ENSPMRG00000022285) #16	ENSPMRG00000022293 #21	PDXK (ENSPMRG00000022302) #19	ENSPMRG00000022309	AGPAT3 (ENSPMRG00000022311) #22	TRAPPC10 (ENSPMRG00000022319) #23	PWP2 (ENSPMRG00000022333) #24	GATD3 (ENSPMRG00000022343) #25	ICOSLG (ENSPMRG00000003355) #26	DNMT3L (ENSPMRG00000003361) #27	ENSPMRG00000003367	ENSPMRG00000003373	DIPK2B (ENSPMRG00000003381)	ENSPMRG00000003409	ENSPMRG00000003527	FUNDC1 (ENSPMRG00000003536)	EFHC2 (ENSPMRG00000003549)	ENSPMRG00000003579	ENSPMRG00000003590	MAOA (ENSPMRG00000003608)
Argentine black and white tegu	MODERN SPECIES		UBASH3A (ENSSMRG00000022921)	RSPH1 (ENSSMRG00000022920)	SLC37A1 (ENSSMRG00000022919)	PDE9A (ENSSMRG00000022917) #7	ENSSMRG00000022916 #9	WDR4 (ENSSMRG00000022915) #8	PKNOX1 (ENSSMRG00000022914) #10	ENSSMRG00000022913 #12	CBS (ENSSMRG00000022912) #12	U2AF1 (ENSSMRG00000022911) #13	CRYAA (ENSSMRG00000022910) #14	SIK1 (ENSSMRG00000022909) #15	HSF2BP (ENSSMRG00000022908) #16	ENSSMRG00000022907 #21	PDXK (ENSSMRG00000022905) #19	AGPAT3 (ENSSMRG00000022903) #22	TRAPPC10 (ENSSMRG00000022902) #23	PWP2 (ENSSMRG00000022901) #24	GATD3 (ENSSMRG00000022900) #25	ICOSLG (ENSSMRG00000022899) #26	DNMT3L (ENSSMRG00000022898) #27	DIPK2B (ENSSMRG00000022892)	ENSSMRG00000022891	FUNDC1 (ENSSMRG00000022890)	EFHC2 (ENSSMRG00000022889)	ENSSMRG00000022888	ENSSMRG00000022887	MAOA (ENSSMRG00000022886)	GPR34 (ENSSMRG00000022884)	CASK (ENSSMRG00000022883)	NYX (ENSSMRG00000022882)
Toxicofera	ANCESTRAL SPECIES	9	ENSGT00940000160841	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027.n #12	ENSGT00510000047027.m #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821 #21	ENSGT00390000003874 #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00520000055625.a	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00940000155600.b	ENSGT00940000160782	ENSGT00940000154443
Elapidae	ANCESTRAL SPECIES	10	ENSGT00940000160841	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027.n #12	ENSGT00510000047027.m #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821 #21	ENSGT00390000003874 #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000154420.B.e.a	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00520000055625.a	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00940000155600.b	ENSGT00940000160782
Elapidae_a	ANCESTRAL SPECIES	64	ENSGT00940000160841	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027.n #12	ENSGT00510000047027.m #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821 #21	ENSGT00390000003874 #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000154420.B.e.a	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00520000055625.a	ENSGT00940000155202.j.h	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00940000155600.b	ENSGT00940000160782
Acanthophiinae	ANCESTRAL SPECIES	58	ENSGT00940000160841	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027.n #12	ENSGT00510000047027.m #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821 #21	ENSGT00390000003874 #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000154420.B.e.a	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00520000055625.a	ENSGT00940000155202.j.h	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00940000155600.b	ENSGT00940000160782
Eastern brown snake	MODERN SPECIES	62	ENSPTXG00000010501	TMPRSS3 (ENSPTXG00000010502)	UBASH3A (ENSPTXG00000010504)	SLC37A1 (ENSPTXG00000010543)	PDE9A (ENSPTXG00000010544) #7	ENSPTXG00000010545 #9	PKNOX1 (ENSPTXG00000010546) #10	ENSPTXG00000010547 #12	CBS (ENSPTXG00000010597) #12	U2AF1 (ENSPTXG00000010599) #13	CRYAA (ENSPTXG00000010601) #14	SIK1 (ENSPTXG00000010603) #15	HSF2BP (ENSPTXG00000010604) #16	ENSPTXG00000010608 #21	PDXK (ENSPTXG00000010611) #19	AGPAT3 (ENSPTXG00000010613) #22	ENSPTXG00000010616	TRAPPC10 (ENSPTXG00000010618) #23	ENSPTXG00000010622	PWP2 (ENSPTXG00000010624) #24	GATD3 (ENSPTXG00000010628) #25	ENSPTXG00000010630 #26	DNMT3L (ENSPTXG00000010633) #27	DIPK2B (ENSPTXG00000010635)	ENSPTXG00000010636	ENSPTXG00000010638	FUNDC1 (ENSPTXG00000010639)	EFHC2 (ENSPTXG00000010640)	ENSPTXG00000010643	ENSPTXG00000010645	MAOA (ENSPTXG00000010646)
Mainland tiger snake	MODERN SPECIES	58	UBASH3A (ENSNSUG00000007336)	RSPH1 (ENSNSUG00000007352)	SLC37A1 (ENSNSUG00000007353)	PDE9A (ENSNSUG00000007354) #7	WDR4 (ENSNSUG00000007453) #8	ENSNSUG00000007457 #9	PKNOX1 (ENSNSUG00000007458) #10	ENSNSUG00000007464 #12	CBS (ENSNSUG00000007469) #12	U2AF1 (ENSNSUG00000007472) #13	CRYAA (ENSNSUG00000007474) #14	SIK1 (ENSNSUG00000007481) #15	HSF2BP (ENSNSUG00000007482) #16	ENSNSUG00000007484 #21	PDXK (ENSNSUG00000007485) #19	AGPAT3 (ENSNSUG00000007488) #22	ENSNSUG00000007510	TRAPPC10 (ENSNSUG00000007511) #23	PWP2 (ENSNSUG00000007518) #24	GATD3 (ENSNSUG00000007886) #25	ENSNSUG00000007887 #26	DNMT3L (ENSNSUG00000007894) #27	ENSNSUG00000007895	DIPK2B (ENSNSUG00000007910)	ENSNSUG00000007952	ENSNSUG00000019302	FUNDC1 (ENSNSUG00000019303)	EFHC2 (ENSNSUG00000019304)	ENSNSUG00000019305	ENSNSUG00000019306	MAOA (ENSNSUG00000019311)
Blue-lipped sea krait	MODERN SPECIES	8685																AGPAT3 (ENSLLTG00000012412) #22	ENSLLTG00000012419
Indian cobra	MODERN SPECIES	4	UBASH3A (ENSNNAG00000013860)	SLC37A1 (ENSNNAG00000013807)	PDE9A (ENSNNAG00000013241) #7	WDR4 (ENSNNAG00000013106) #8	ENSNNAG00000013081	ENSNNAG00000013069 #10	ENSNNAG00000013036 #10	ENSNNAG00000012987 #12	CBS (ENSNNAG00000011947) #12	U2AF1 (ENSNNAG00000011782) #13	CRYAA (ENSNNAG00000011756) #14	SIK1 (ENSNNAG00000011611) #15	HSF2BP (ENSNNAG00000011433) #16	ENSNNAG00000011390 #21	PDXK (ENSNNAG00000011216) #19	AGPAT3 (ENSNNAG00000011161) #22	ENSNNAG00000011145	TRAPPC10 (ENSNNAG00000011031) #23	PWP2 (ENSNNAG00000010729) #24	GATD3 (ENSNNAG00000010524) #25	ENSNNAG00000010432 #26	DNMT3L (ENSNNAG00000010342) #27	DIPK2B (ENSNNAG00000010306)	ENSNNAG00000008743	ENSNNAG00000008579	FUNDC1 (ENSNNAG00000008553)	EFHC2 (ENSNNAG00000008477)	ENSNNAG00000008469	ENSNNAG00000008250	MAOA (ENSNNAG00000007840)	CASK (ENSNNAG00000006518)
Lizard	MODERN SPECIES	2	ENSACAG00000044666	SLC37A1 (ENSACAG00000002938)	PDE9A (ENSACAG00000002778) #7	WDR4 (ENSACAG00000002741) #8	ENSACAG00000040081	PKNOX1 (ENSACAG00000002626) #10	ENSACAG00000002605 #12	CBS (ENSACAG00000017832) #12	u2af1 (ENSACAG00000037602) #13	CRYAA (ENSACAG00000017837) #14	ENSACAG00000045425	SIK1 (ENSACAG00000017841) #15	HSF2BP (ENSACAG00000017849) #16	ENSACAG00000017851 #21	PDXK (ENSACAG00000017853) #19	AGPAT3 (ENSACAG00000017856) #22	ENSACAG00000044735	ENSACAG00000034895	TRAPPC10 (ENSACAG00000017858) #23	PWP2 (ENSACAG00000017861) #24	gatd3a (ENSACAG00000036503) #25	ICOSLG (ENSACAG00000017873) #26	DNMT3L (ENSACAG00000028767) #27	DIPK2B (ENSACAG00000017875)	ENSACAG00000042702	ENSACAG00000039813	ENSACAG00000017877	ENSACAG00000038735	ENSACAG00000044837	FUNDC1 (ENSACAG00000036163)	EFHC2 (ENSACAG00000017897)
tuatara	MODERN SPECIES	648														ENSSPUG00000002834 #21	PDXK (ENSSPUG00000002881) #19	AGPAT3 (ENSSPUG00000002910) #22	TRAPPC10 (ENSSPUG00000002941) #23	PWP2 (ENSSPUG00000002980) #24	GATD3 (ENSSPUG00000003070) #25	ENSSPUG00000003075	ICOSLG (ENSSPUG00000003087) #26
Archelosauria	ANCESTRAL SPECIES		ENSGT00940000160841	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027.n #12	ENSGT00510000047027.m #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821 #21	ENSGT00390000003874 #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00520000055625.a	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00940000155600.b	ENSGT00990000203619.A.a	ENSGT01060000248589.C
Archosauria	ANCESTRAL SPECIES	2	ENSGT00940000160841	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027.n #12	ENSGT00510000047027.m #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821 #21	ENSGT00390000003874 #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT01040000241275	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00520000055625.a	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00940000155600.b	ENSGT00990000203619.A.a
Aves	ANCESTRAL SPECIES		ENSGT00940000160841	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027.n #12	ENSGT00510000047027.m #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821 #21	ENSGT00390000003874 #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT01040000241275	ENSGT00940000161590 #26	ENSGT00520000055625.a	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00940000155600.b	ENSGT00990000203619.A.a	ENSGT01060000248589.C
Neognathae	ANCESTRAL SPECIES	1	ENSGT00940000160841	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027.n #12	ENSGT00510000047027.m #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821 #21	ENSGT00390000003874 #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT01040000241275	ENSGT00940000161590 #26	ENSGT00520000055625.a	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00940000155600.b	ENSGT00990000203619.A.a	ENSGT01060000248589.C
Galloanserae	ANCESTRAL SPECIES	1	ENSGT00940000160841	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027.n #12	ENSGT00510000047027.m #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821 #21	ENSGT00390000003874 #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT01040000241275	ENSGT00940000161590 #26	ENSGT00520000055625.a	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00940000155600.b	ENSGT00990000203619.A.a	ENSGT01060000248589.C
Anatidae	ANCESTRAL SPECIES	6	ENSGT00940000160841	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027.n #12	ENSGT00510000047027.m #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821 #21	ENSGT00390000003874 #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT01040000241275	ENSGT00940000161590 #26	ENSGT00520000055625.a	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00390000004304	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00990000203619.A.a	ENSGT01060000248589.C
Duck	MODERN SPECIES		UBASH3A (ENSAPLG00000008138)	RSPH1 (ENSAPLG00000007969)	SLC37A1 (ENSAPLG00000007435)	PDE9A (ENSAPLG00000007348) #7	WDR4 (ENSAPLG00000007171) #8	ENSAPLG00000001508 #9	PKNOX1 (ENSAPLG00000009259) #10	ENSAPLG00000029470 #12	CBS (ENSAPLG00000009685) #12	U2AF1 (ENSAPLG00000030109) #13	CRYAA (ENSAPLG00000017972) #14	SIK1 (ENSAPLG00000004813) #15	HSF2BP (ENSAPLG00000004231) #16	ENSAPLG00000004310 #21	PDXK (ENSAPLG00000004480) #19	AGPAT3 (ENSAPLG00000009814) #22	TRAPPC10 (ENSAPLG00000010086) #23	PWP2 (ENSAPLG00000010371) #24	GATD3 (ENSAPLG00000018842) #25	ENSAPLG00000010861	ICOSLG (ENSAPLG00000010902) #26	DIPK2B (ENSAPLG00000010917)	ENSAPLG00000011033	ENSAPLG00000027576	FUNDC1 (ENSAPLG00000012067)	EFHC2 (ENSAPLG00000012158)	NDP (ENSAPLG00000030151)	ENSAPLG00000012540	MAOA (ENSAPLG00000013230)	GPR82 (ENSAPLG00000019460)	GPR34 (ENSAPLG00000002101)
Pink-footed goose	MODERN SPECIES	12	UBASH3A (ENSABRG00000015080)	RSPH1 (ENSABRG00000015073)	SLC37A1 (ENSABRG00000015063)	PDE9A (ENSABRG00000015054) #7	WDR4 (ENSABRG00000015048) #8	ENSABRG00000015047 #9	PKNOX1 (ENSABRG00000015044) #10	ENSABRG00000015041 #12	CBS (ENSABRG00000015037) #12	U2AF1 (ENSABRG00000015022) #13	CRYAA (ENSABRG00000015013) #14	SIK1 (ENSABRG00000015006) #15	HSF2BP (ENSABRG00000015002) #16	ENSABRG00000014992 #21	PDXK (ENSABRG00000014987) #19	AGPAT3 (ENSABRG00000014898) #22	TRAPPC10 (ENSABRG00000014839) #23	PWP2 (ENSABRG00000014711) #24	GATD3 (ENSABRG00000014692) #25	ICOSLG (ENSABRG00000014688) #26	DIPK2B (ENSABRG00000014660)	ENSABRG00000010917	FUNDC1 (ENSABRG00000010568)	EFHC2 (ENSABRG00000010543)	ENSABRG00000010523	ENSABRG00000010502	MAOA (ENSABRG00000010487)	GPR34 (ENSABRG00000010454)	CASK (ENSABRG00000010365)	NYX (ENSABRG00000010347)	ENSABRG00000010314
Phasianidae	ANCESTRAL SPECIES		ENSGT00940000160841	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027.n #12	ENSGT00510000047027.m #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821 #21	ENSGT00390000003874 #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873.q #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT01040000241275	ENSGT00940000161590 #26	ENSGT00520000055625.a	ENSGT00940000155202.j.b	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00940000155600.b	ENSGT00990000203619.A.a	ENSGT01060000248589.C
Phasianidae_b	ANCESTRAL SPECIES		ENSGT00940000160841	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027.n #12	ENSGT00510000047027.m #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821 #21	ENSGT00390000003874 #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873.q #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT01040000241275	ENSGT00940000161590 #26	ENSGT00520000055625.a	ENSGT00940000155202.j.a	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00940000155600.b	ENSGT00990000203619.A.a	ENSGT01060000248589.C
Chicken	MODERN SPECIES		UBASH3A (ENSGALG00010011139)	RSPH1 (ENSGALG00010011185)	SLC37A1 (ENSGALG00010011211)	PDE9A (ENSGALG00010011244) #7	WDR4 (ENSGALG00010011275) #8	NDUFV3 (ENSGALG00010011293) #9	PKNOX1 (ENSGALG00010011340) #10	ENSGALG00010011814 #12	CBS (ENSGALG00010011839) #12	U2AF1 (ENSGALG00010011880) #13	CRYAA (ENSGALG00010011889) #14	SIK1 (ENSGALG00010011896) #15	HSF2BP (ENSGALG00010011917) #16	RRP1B (ENSGALG00010011925) #21	PDXK (ENSGALG00010011950) #19	AGPAT3 (ENSGALG00010011961) #22	TRAPPC10 (ENSGALG00010011973) #23	PWP2 (ENSGALG00010014726) #24	GATD3A (ENSGALG00010011977) #25	ENSGALG00010011985	ICOSLG (ENSGALG00010012041) #26	C1HXORF36 (ENSGALG00010009786)	ENSGALG00010011421	FUNDC1 (ENSGALG00010011440)	EFHC2 (ENSGALG00010011468)	NDP (ENSGALG00010011475)	MAOB (ENSGALG00010011533)	MAOA (ENSGALG00010011546)	CASK (ENSGALG00010002424)	GPR82 (ENSGALG00010002439)	GPR34 (ENSGALG00010002434)
Turkey	MODERN SPECIES		ENSMGAG00000014564	ENSMGAG00000014604	ENSMGAG00000014606	ENSMGAG00000014605	EFHC2 (ENSMGAG00000014603)	ENSMGAG00000014602	ENSMGAG00000017681	ENSMGAG00000014601	ENSMGAG00000017006	ENSMGAG00000014599	ENSMGAG00000014597 #26	ENSMGAG00000017291 #25	ENSMGAG00000014596 #24	ENSMGAG00000014594 #23	ENSMGAG00000019240 #23	ENSMGAG00000014593 #22	ENSMGAG00000014592 #19	ENSMGAG00000014591 #21	ENSMGAG00000014590 #16	ENSMGAG00000014589 #15	ENSMGAG00000017966 #14	ENSMGAG00000014587 #13	ENSMGAG00000014586 #12	ENSMGAG00000014582 #10	ENSMGAG00000014581 #9	ENSMGAG00000014577 #7	ENSMGAG00000014580 #8	SLC37A1 (ENSMGAG00000014579)	TFF2 (ENSMGAG00000014574)	ENSMGAG00000014575	UBASH3A (ENSMGAG00000014576)
Japanese quail	MODERN SPECIES		UBASH3A (ENSCJPG00005008708)	RSPH1 (ENSCJPG00005008709)	SLC37A1 (ENSCJPG00005008710)	PDE9A (ENSCJPG00005008711) #7	WDR4 (ENSCJPG00005008712) #8	ENSCJPG00005008713 #9	PKNOX1 (ENSCJPG00005008714) #10	ENSCJPG00005008715 #12	CBS (ENSCJPG00005008721) #12	U2AF1 (ENSCJPG00005008722) #13	CRYAA (ENSCJPG00005008723) #14	SIK1 (ENSCJPG00005008725) #15	HSF2BP (ENSCJPG00005008756) #16	ENSCJPG00005008758 #21	PDXK (ENSCJPG00005008759) #19	AGPAT3 (ENSCJPG00005008761) #22	TRAPPC10 (ENSCJPG00005008778) #23	PWP2 (ENSCJPG00005008782) #24	ICOSLG (ENSCJPG00005008975) #26	DIPK2B (ENSCJPG00005008983)	ENSCJPG00005009018	FUNDC1 (ENSCJPG00005012620)	EFHC2 (ENSCJPG00005012621)	ENSCJPG00005012623	ENSCJPG00005012624	MAOA (ENSCJPG00005012625)	CASK (ENSCJPG00005012631)	GPR82 (ENSCJPG00005012632)	GPR34 (ENSCJPG00005012633)	NYX (ENSCJPG00005012634)	ENSCJPG00005012635
Neognathae_b	ANCESTRAL SPECIES		ENSGT00940000160841	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027.n #12	ENSGT00510000047027.m #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821 #21	ENSGT00390000003874 #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT01040000241275	ENSGT00940000161590 #26	ENSGT00520000055625.a	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00940000155600.b	ENSGT00990000203619.A.a	ENSGT01060000248589.C
Passeriformes	ANCESTRAL SPECIES	1	ENSGT00940000160841	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027.n #12	ENSGT00510000047027.m #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821 #21	ENSGT00390000003874 #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT01040000241275	ENSGT00940000161590 #26	ENSGT00520000055625.a	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00940000155600.b	ENSGT00990000203619.A.a	ENSGT01060000248589.C
Great tit	MODERN SPECIES		RSPH1 (ENSPMJG00000010629)	SLC37A1 (ENSPMJG00000010630)	PDE9A (ENSPMJG00000010631) #7	WDR4 (ENSPMJG00000010640) #8	ENSPMJG00000010687 #9	PKNOX1 (ENSPMJG00000010709) #10	ENSPMJG00000010711 #12	CBS (ENSPMJG00000010712) #12	ENSPMJG00000010715	U2AF1 (ENSPMJG00000010719) #13	CRYAA (ENSPMJG00000010726) #14	SIK1 (ENSPMJG00000010767) #15	HSF2BP (ENSPMJG00000010768) #16	ENSPMJG00000010769 #21	PDXK (ENSPMJG00000010770) #19	AGPAT3 (ENSPMJG00000010793) #22	TRAPPC10 (ENSPMJG00000010794) #23	PWP2 (ENSPMJG00000010796) #24	GATD3 (ENSPMJG00000010797) #25	ENSPMJG00000010798	ENSPMJG00000010800 #26	DIPK2B (ENSPMJG00000010838)	ENSPMJG00000010877	FUNDC1 (ENSPMJG00000010881)	EFHC2 (ENSPMJG00000010882)	ENSPMJG00000010883	ENSPMJG00000010884	ENSPMJG00000010923	MAOA (ENSPMJG00000010926)	CASK (ENSPMJG00000010956)	GPR82 (ENSPMJG00000010961)
Passeriformes_d	ANCESTRAL SPECIES	1	ENSGT00940000160841	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027.n #12	ENSGT00510000047027.m #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821 #21	ENSGT00390000003874 #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT01040000241275	ENSGT00940000161590 #26	ENSGT00520000055625.a	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00990000203619.A.a	ENSGT01060000248589.C	ENSGT00940000155600.b
Passeriformes_g	ANCESTRAL SPECIES	2	ENSGT00940000160841	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027.n #12	ENSGT00510000047027.m #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821 #21	ENSGT00390000003874 #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT01040000241275	ENSGT00940000161590 #26	ENSGT00520000055625.a	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00990000203619.A.a	ENSGT01060000248589.C	ENSGT00940000155600.b
Medium ground finch	MODERN SPECIES	141	RSPH1 (ENSGFOG00000014528)	SLC37A1 (ENSGFOG00000014521)	PDE9A (ENSGFOG00000014513) #7	WDR4 (ENSGFOG00000014511) #8	ENSGFOG00000014508 #9	PKNOX1 (ENSGFOG00000014506) #10	ENSGFOG00000014502 #12	CBS (ENSGFOG00000014500) #12	U2AF1 (ENSGFOG00000014496) #13	ENSGFOG00000014492	CRYAA (ENSGFOG00000014491) #14	SIK1 (ENSGFOG00000014484) #15	HSF2BP (ENSGFOG00000014482) #16	ENSGFOG00000014480 #21	PDXK (ENSGFOG00000014477) #19	AGPAT3 (ENSGFOG00000014473) #22	TRAPPC10 (ENSGFOG00000014464) #23	PWP2 (ENSGFOG00000014422) #24	GATD3 (ENSGFOG00000014405) #25	ICOSLG (ENSGFOG00000014401) #26
Passeroidea	ANCESTRAL SPECIES	10	ENSGT00940000160841	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027.n #12	ENSGT00510000047027.m #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821 #21	ENSGT00390000003874 #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT01040000241275	ENSGT00940000161590 #26	ENSGT00520000055625.a	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00940000155600.b	ENSGT00940000160782	ENSGT00940000154443
Zebra finch	MODERN SPECIES		UBASH3A (ENSTGUG00000005618)	RSPH1 (ENSTGUG00000005646)	SLC37A1 (ENSTGUG00000005671)	PDE9A (ENSTGUG00000005695) #7	WDR4 (ENSTGUG00000005733) #8	ENSTGUG00000005743 #9	PKNOX1 (ENSTGUG00000005745) #10	ENSTGUG00000005778 #12	CBS (ENSTGUG00000005790) #12	U2AF1 (ENSTGUG00000028798) #13	CRYAA (ENSTGUG00000024562) #14	SIK1 (ENSTGUG00000005884) #15	HSF2BP (ENSTGUG00000005915) #16	ENSTGUG00000005926 #21	PDXK (ENSTGUG00000021550) #19	AGPAT3 (ENSTGUG00000005961) #22	TRAPPC10 (ENSTGUG00000005983) #23	PWP2 (ENSTGUG00000005996) #24	GATD3 (ENSTGUG00000006045) #25	ENSTGUG00000006063 #26	DIPK2B (ENSTGUG00000006067)	ENSTGUG00000006075	FUNDC1 (ENSTGUG00000006139)	EFHC2 (ENSTGUG00000006145)	ENSTGUG00000023894	ENSTGUG00000006169	MAOA (ENSTGUG00000006274)	GPR82 (ENSTGUG00000006431)	GPR34 (ENSTGUG00000006433)	CASK (ENSTGUG00000006375)	NYX (ENSTGUG00000006438)
Common canary	MODERN SPECIES	11	UBASH3A (ENSSCAG00000010991)	RSPH1 (ENSSCAG00000011006)	SLC37A1 (ENSSCAG00000011016)	PDE9A (ENSSCAG00000011039) #7	WDR4 (ENSSCAG00000011104) #8	ENSSCAG00000011106 #9	PKNOX1 (ENSSCAG00000011110) #10	ENSSCAG00000011125 #12	CBS (ENSSCAG00000011177) #12	U2AF1 (ENSSCAG00000011188) #13	CRYAA (ENSSCAG00000011193) #14	SIK1 (ENSSCAG00000011195) #15	HSF2BP (ENSSCAG00000011206) #16	ENSSCAG00000011213 #21	PDXK (ENSSCAG00000011227) #19	AGPAT3 (ENSSCAG00000011265) #22	TRAPPC10 (ENSSCAG00000011280) #23	PWP2 (ENSSCAG00000011297) #24	GATD3 (ENSSCAG00000011312) #25	ENSSCAG00000011316	ENSSCAG00000011328 #26	DIPK2B (ENSSCAG00000011357)	ENSSCAG00000011378	FUNDC1 (ENSSCAG00000011418)	EFHC2 (ENSSCAG00000011425)	ENSSCAG00000011430	ENSSCAG00000011433	MAOA (ENSSCAG00000011441)	CASK (ENSSCAG00000011458)	GPR82 (ENSSCAG00000011488)	GPR34 (ENSSCAG00000011492)
Flycatcher	MODERN SPECIES		TMPRSS3 (ENSFALG00000002042)	UBASH3A (ENSFALG00000002028)	RSPH1 (ENSFALG00000002230)	SLC37A1 (ENSFALG00000001964)	PDE9A (ENSFALG00000001967) #7	WDR4 (ENSFALG00000027087) #8	ENSFALG00000001974 #9	PKNOX1 (ENSFALG00000001975) #10	CBS (ENSFALG00000001994) #12	U2AF1 (ENSFALG00000027776) #13	CRYAA (ENSFALG00000002001) #14	SIK1 (ENSFALG00000002012) #15	HSF2BP (ENSFALG00000002019) #16	ENSFALG00000002024 #21	PDXK (ENSFALG00000012249) #19	AGPAT3 (ENSFALG00000012275) #22	ENSFALG00000025043	TRAPPC10 (ENSFALG00000012289) #23	PWP2 (ENSFALG00000012300) #24	GATD3 (ENSFALG00000012311) #25	ENSFALG00000024438	ICOSLG (ENSFALG00000012321) #26	ENSFALG00000001469	ENSFALG00000001470	FUNDC1 (ENSFALG00000001471)	EFHC2 (ENSFALG00000001472)	ENSFALG00000001480	MAOA (ENSFALG00000001499)	ENSFALG00000024766	CASK (ENSFALG00000001525)	GPR34 (ENSFALG00000014501)
Neognathae_c	ANCESTRAL SPECIES	4	ENSGT00940000160841	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027.n #12	ENSGT00510000047027.m #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821 #21	ENSGT00390000003874 #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT01040000241275	ENSGT00940000161590 #26	ENSGT00520000055625.a	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00940000155600.b	ENSGT00990000203619.A.a	ENSGT01060000248589.C
Kakapo	MODERN SPECIES	11	UBASH3A (ENSSHBG00005019270)	RSPH1 (ENSSHBG00005019277)	SLC37A1 (ENSSHBG00005019286)	PDE9A (ENSSHBG00005019339) #7	WDR4 (ENSSHBG00005019343) #8	NDUFV3 (ENSSHBG00005019346) #9	PKNOX1 (ENSSHBG00005019349) #10	ENSSHBG00005019355 #12	CBS (ENSSHBG00005000427) #12	U2AF1 (ENSSHBG00005009756) #13	CRYAA (ENSSHBG00005009784) #14	SIK1 (ENSSHBG00005009793) #15	HSF2BP (ENSSHBG00005009817) #16	ENSSHBG00005009836 #21	PDXK (ENSSHBG00005009861) #19	AGPAT3 (ENSSHBG00005009891) #22	TRAPPC10 (ENSSHBG00005009916) #23	PWP2 (ENSSHBG00005010009) #24	GATD3 (ENSSHBG00005010181) #25	ENSSHBG00005010205	ICOSLG (ENSSHBG00005010235) #26	DIPK2B (ENSSHBG00005010284)	ENSSHBG00005010530	FUNDC1 (ENSSHBG00005011082)	EFHC2 (ENSSHBG00005011127)	ENSSHBG00005011220	ENSSHBG00005011242	MAOA (ENSSHBG00005011266)	CASK (ENSSHBG00005011323)	GPR82 (ENSSHBG00005011382)	GPR34 (ENSSHBG00005011397)
Golden eagle	MODERN SPECIES	23	TMPRSS3 (ENSACCG00020007654)	UBASH3A (ENSACCG00020007674)	RSPH1 (ENSACCG00020007688)	SLC37A1 (ENSACCG00020007707)	PDE9A (ENSACCG00020007792) #7	WDR4 (ENSACCG00020007850) #8	NDUFV3 (ENSACCG00020007876) #9	PKNOX1 (ENSACCG00020007897) #10	ENSACCG00020007941 #12	CBS (ENSACCG00020007976) #12	U2AF1 (ENSACCG00020000366) #13	CRYAA (ENSACCG00020000396) #14	SIK1 (ENSACCG00020000415) #15	HSF2BP (ENSACCG00020000473) #16	ENSACCG00020000551 #21	AGPAT3 (ENSACCG00020000595) #22	TRAPPC10 (ENSACCG00020000627) #23	PWP2 (ENSACCG00020000686) #24	GATD3 (ENSACCG00020000749) #25	ICOSLG (ENSACCG00020000802) #26	DIPK2B (ENSACCG00020000932)	ENSACCG00020001083	FUNDC1 (ENSACCG00020001207)	EFHC2 (ENSACCG00020001221)	ENSACCG00020001244	ENSACCG00020001263	MAOA (ENSACCG00020001289)	CASK (ENSACCG00020001395)	GPR82 (ENSACCG00020001511)	GPR34 (ENSACCG00020001520)	NYX (ENSACCG00020001529)
African ostrich	MODERN SPECIES	769	UBASH3A (ENSSCUG00000012087)	RSPH1 (ENSSCUG00000012092)	SLC37A1 (ENSSCUG00000012095)	PDE9A (ENSSCUG00000012105) #7	WDR4 (ENSSCUG00000012111) #8	ENSSCUG00000012114 #9	PKNOX1 (ENSSCUG00000012117) #10	ENSSCUG00000012127 #12	CBS (ENSSCUG00000012140) #12	U2AF1 (ENSSCUG00000012146) #13	CRYAA (ENSSCUG00000012154) #14	SIK1 (ENSSCUG00000012156) #15	HSF2BP (ENSSCUG00000012165) #16	ENSSCUG00000012171 #21	PDXK (ENSSCUG00000012182) #19	AGPAT3 (ENSSCUG00000012198) #22	TRAPPC10 (ENSSCUG00000012202) #23	PWP2 (ENSSCUG00000012205) #24	GATD3 (ENSSCUG00000012211) #25	ICOSLG (ENSSCUG00000012219) #26	DIPK2B (ENSSCUG00000012227)	ENSSCUG00000012987	FUNDC1 (ENSSCUG00000014599)	EFHC2 (ENSSCUG00000014602)	ENSSCUG00000014606	ENSSCUG00000014608	MAOA (ENSSCUG00000014612)	ENSSCUG00000014621	GPR82 (ENSSCUG00000014622)	GPR34 (ENSSCUG00000014623)
Australian saltwater crocodile	MODERN SPECIES	27	RSPH1 (ENSCPRG00005016260)	SLC37A1 (ENSCPRG00005016286)	PDE9A (ENSCPRG00005016345) #7	WDR4 (ENSCPRG00005016385) #8	ENSCPRG00005016392	PKNOX1 (ENSCPRG00005016400) #10	ENSCPRG00005016414 #12	CBS (ENSCPRG00005016418) #12	U2AF1 (ENSCPRG00005016421) #13	CRYAA (ENSCPRG00005016425) #14	SIK1 (ENSCPRG00005016431) #15	HSF2BP (ENSCPRG00005016440) #16	ENSCPRG00005016442	ENSCPRG00005016447 #21	PDXK (ENSCPRG00005016474) #19	AGPAT3 (ENSCPRG00005016481) #22	TRAPPC10 (ENSCPRG00005016491) #23	PWP2 (ENSCPRG00005016498) #24	GATD3 (ENSCPRG00005016510) #25	ENSCPRG00005016512	ICOSLG (ENSCPRG00005016520) #26	DNMT3L (ENSCPRG00005016525) #27	DIPK2B (ENSCPRG00005016544)	ENSCPRG00005016852	FUNDC1 (ENSCPRG00005017487)	EFHC2 (ENSCPRG00005017502)	ENSCPRG00005017509	ENSCPRG00005017515	MAOA (ENSCPRG00005017529)	CASK (ENSCPRG00005017561)	GPR82 (ENSCPRG00005017600)
Cryptodira	ANCESTRAL SPECIES		ENSGT00940000160841	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00510000047027.n #12	ENSGT00510000047027.m #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821 #21	ENSGT00390000003874 #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00520000055625.a	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00990000203619.A.a	ENSGT01060000248589.C	ENSGT00940000155600.b
Testudinoidea	ANCESTRAL SPECIES	1	ENSGT00940000160841	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505.bb #10	ENSGT00510000047027.n #12	ENSGT00510000047027.m #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821 #21	ENSGT00390000003874 #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00520000055625.a	ENSGT00940000155202.j.e	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00990000203619.A.a	ENSGT01060000248589.C	ENSGT00940000155600.b
Testudinidae	ANCESTRAL SPECIES		ENSGT00940000160841	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505.bb #10	ENSGT00510000047027.n #12	ENSGT00510000047027.m #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821 #21	ENSGT00390000003874 #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00520000055625.a	ENSGT00940000155202.j.e	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00940000155600.b	ENSGT00990000203619.A.a	ENSGT01060000248589.C
Abingdon island giant tortoise	MODERN SPECIES	2161																AGPAT3 (ENSCABG00000018414) #22	TRAPPC10 (ENSCABG00000018247) #23	PWP2 (ENSCABG00000018051) #24	GATD3 (ENSCABG00000018035) #25	ICOSLG (ENSCABG00000018032) #26	DNMT3L (ENSCABG00000018030) #27	DIPK2B (ENSCABG00000018027)
Goode s thornscrub tortoise	MODERN SPECIES		TMPRSS3 (ENSGEVG00005001298)	UBASH3A (ENSGEVG00005001268)	SLC37A1 (ENSGEVG00005001209)	PDE9A (ENSGEVG00005001079) #7	WDR4 (ENSGEVG00005000994) #8	ENSGEVG00005000977 #9	PKNOX1 (ENSGEVG00005000925) #10	ENSGEVG00005000868 #12	CBS (ENSGEVG00005000807) #12	U2AF1 (ENSGEVG00005000755) #13	CRYAA (ENSGEVG00005000741) #14	SIK1 (ENSGEVG00005000723) #15	HSF2BP (ENSGEVG00005000709) #16	ENSGEVG00005000688 #21	PDXK (ENSGEVG00005000653) #19	AGPAT3 (ENSGEVG00005000632) #22	TRAPPC10 (ENSGEVG00005000565) #23	PWP2 (ENSGEVG00005000519) #24	GATD3 (ENSGEVG00005000495) #25	ICOSLG (ENSGEVG00005000470) #26	DNMT3L (ENSGEVG00005000441) #27	DIPK2B (ENSGEVG00005000423)	ENSGEVG00005000311	FUNDC1 (ENSGEVG00005000226)	EFHC2 (ENSGEVG00005000187)	ENSGEVG00005000168	ENSGEVG00005000126	MAOA (ENSGEVG00005000038)	ENSGEVG00005000013	GPR82 (ENSGEVG00005005110)	GPR34 (ENSGEVG00005005096)
Emydidae	ANCESTRAL SPECIES	28	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505.bb #10	ENSGT00510000047027.n #12	ENSGT00510000047027.m #12	ENSGT00950000183152.B.c.a #13	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000011821 #21	ENSGT00390000003874 #19	ENSGT00950000186123.b	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00520000055625.a	ENSGT00940000155202.j.e	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00990000203619.A.a	ENSGT01060000248589.C	ENSGT00940000155600.b
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	9														ENSTMTG00000012150 #19	ENSTMTG00000012127	ENSTMTG00000012114 #22	ENSTMTG00000012051 #23	ENSTMTG00000012016 #24	ENSTMTG00000012004 #25	ENSTMTG00000011991 #26	ENSTMTG00000011970 #27	ENSTMTG00000011930	ENSTMTG00000011738	ENSTMTG00000011695	ENSTMTG00000011611	ENSTMTG00000011592	ENSTMTG00000011586	ENSTMTG00000011563	ENSTMTG00000010314	ENSTMTG00000010302	ENSTMTG00000010016
Three-toed box turtle	MODERN SPECIES	7														ENSTMTG00000001770 #19	ENSTMTG00000001766	ENSTMTG00000001759 #22	ENSTMTG00000001743 #23	ENSTMTG00000001731 #24	ENSTMTG00000001725 #25	ENSTMTG00000001720 #26	ENSTMTG00000001711 #27	ENSTMTG00000001694	ENSTMTG00000001519	FUNDC1 (ENSTMTG00000001463)	ENSTMTG00000001440	ENSTMTG00000001430	ENSTMTG00000001354	ENSTMTG00000001327	ENSTMTG00000001318	GPR34 (ENSTMTG00000001312)	ENSTMTG00000001227
painted turtle	MODERN SPECIES	1112															WT1 (ENSCPBG00000018273)	AGPAT3 (ENSCPBG00000018276) #22	TRAPPC10 (ENSCPBG00000018280) #23	PWP2 (ENSCPBG00000018335) #24	GATD3 (ENSCPBG00000018341) #25
Chinese turtle	MODERN SPECIES	2218	ENSPSIG00000000453	RSPH1 (ENSPSIG00000013753)	SLC37A1 (ENSPSIG00000013862)	PDE9A (ENSPSIG00000015118) #7	WDR4 (ENSPSIG00000017237) #8	NDUFV3 (ENSPSIG00000017660) #9	PKNOX1 (ENSPSIG00000017680) #10	ENSPSIG00000018134 #12	CBS (ENSPSIG00000018147) #12	U2AF1 (ENSPSIG00000007232) #13	CRYAA (ENSPSIG00000007237) #14	SIK1 (ENSPSIG00000007456) #15	HSF2BP (ENSPSIG00000007635) #16	ENSPSIG00000008152 #21	PDXK (ENSPSIG00000008160) #19	AGPAT3 (ENSPSIG00000008828) #22	TRAPPC10 (ENSPSIG00000009311) #23	PWP2 (ENSPSIG00000009783) #24	GATD3 (ENSPSIG00000010691) #25	ICOSLG (ENSPSIG00000010840) #26	DNMT3L (ENSPSIG00000010851) #27	DIPK2B (ENSPSIG00000011247)	ENSPSIG00000011316	FUNDC1 (ENSPSIG00000013793)	EFHC2 (ENSPSIG00000013800)	ENSPSIG00000014254	ENSPSIG00000014322	MAOA (ENSPSIG00000015202)	ENSPSIG00000000458	ENSPSIG00000000464	CASK (ENSPSIG00000015999)
Anura	ANCESTRAL SPECIES	289											ENSGT00510000047027 #12	ENSGT00950000183152.B.c.a #13	ENSGT00390000008490 #16	ENSGT00390000011821 #21	ENSGT00390000003874 #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24
Leishan spiny toad	MODERN SPECIES	5	STXBP5L (ENSLLEG00000006960)	POLQ (ENSLLEG00000006581)	ENSLLEG00000006521	CFAP44 (ENSLLEG00000006250)	ENSLLEG00000006166	BOC (ENSLLEG00000005991)	CASR (ENSLLEG00000005947)	ENSLLEG00000005926	ENSLLEG00000005890	ENSLLEG00000005843	ENSLLEG00000002454	ENSLLEG00000002438	ENSLLEG00000002430	ENSLLEG00000002422	PDXK (ENSLLEG00000002397) #19	AGPAT3 (ENSLLEG00000002370) #22	ENSLLEG00000002356	ENSLLEG00000002341	ENSLLEG00000002335	ENSLLEG00000002318	ENSLLEG00000002260 #21	ENSLLEG00000002240	ENSLLEG00000002211 #16	ENSLLEG00000002190	ENSLLEG00000002172	PKNOX1 (ENSLLEG00000002137) #10	ENSLLEG00000002114	ENSLLEG00000002089 #8	ENSLLEG00000002074	ENSLLEG00000002050 ##7	ENSLLEG00000001953
Frog	MODERN SPECIES	2	timmdc1 (ENSXETG00000041609)	ENSXETG00000041110	ENSXETG00000042310	ENSXETG00000041442	ENSXETG00000045526	icoslg (ENSXETG00000047833) #26	ENSXETG00000045493 #25	u2af1 (ENSXETG00000040592) #13	cryaa (ENSXETG00000020802) #14	ENSXETG00000044072	ENSXETG00000045504	ENSXETG00000044642	hsf2bp (ENSXETG00000045215) #16	rrp1b (ENSXETG00000013683) #21	pdxk (ENSXETG00000038974) #19	agpat3 (ENSXETG00000044392) #22	trappc10 (ENSXETG00000018000) #23	pwp2 (ENSXETG00000047683) #24	ENSXETG00000044125	ENSXETG00000044998	XB5894678 [provisional:btnl10] (ENSXETG00000046927)	vtcn1 (ENSXETG00000039560)	ENSXETG00000041646	ENSXETG00000018007	ENSXETG00000045978	fstl1 (ENSXETG00000042356)	lrrc58 (ENSXETG00000045906)	gpr156 (ENSXETG00000035001)	pla1a (ENSXETG00000045043)	gsk3b (ENSXETG00000047929)	ENSXETG00000048690
Coelacanth	MODERN SPECIES	359															PDXK (ENSLACG00000022240) #19	AGPAT3 (ENSLACG00000017316) #22	SIK1 (ENSLACG00000017075) #15	CRYAA (ENSLACG00000016822) #14	TRAPPC10 (ENSLACG00000016449) #23	PRDM15 (ENSLACG00000016206)	zgc:112083 (ENSLACG00000016085)	RIPK4 (ENSLACG00000015865)	TMPRSS2 (ENSLACG00000015538)	ENSLACG00000015439	FAM3B (ENSLACG00000015233)	BACE2 (ENSLACG00000015003)	ENSLACG00000013522	DSCAM (ENSLACG00000005272)	PCP4 (ENSLACG00000022631)	ENSLACG00000001489
Actinopterygii	ANCESTRAL SPECIES	243			ENSGT00390000011821 #21	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00950000183152.B.c.a #13	ENSGT00510000047027 #12	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000003874 #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25
Neopterygii	ANCESTRAL SPECIES	261					ENSGT00990000204624	ENSGT00530000063970.e	ENSGT00530000063970.f	ENSGT00940000164706	ENSGT01030000235355	ENSGT00950000183152.B.c.a #13	ENSGT00510000047027 #12	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000003874 #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24
Osteoglossocephalai	ANCESTRAL SPECIES	53	ENSGT00520000055635.c.a.a.b	ENSGT00940000161118	ENSGT00390000003024	ENSGT00940000164706.b	ENSGT00990000204624	ENSGT00530000063970.e	ENSGT00530000063970.f	ENSGT00940000164706.a	ENSGT01030000235355	ENSGT00950000183152.B.c.a #13	ENSGT00510000047027.c #12	ENSGT00940000160159 #14	ENSGT00940000154989 #15	ENSGT00390000008490 #16	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24
Osteoglossiformes	ANCESTRAL SPECIES	328			ENSGT00390000011821 #21	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000008902.kb	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00940000158589.b.a	ENSGT00940000159393	ENSGT00940000159775.d	ENSGT00390000016547	ENSGT00940000158449	ENSGT00890000139463.b.b.b.a	ENSGT00390000003874.a.b #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24
Asian bonytongue	MODERN SPECIES	5	ENSSFOG00015000387	ENSSFOG00015025471	ENSSFOG00015000478	cpox (ENSSFOG00015000500)	prrg1 (ENSSFOG00015024994)	ENSSFOG00015000545	ENSSFOG00015025496	ENSSFOG00015003932 #21	PDE9A (ENSSFOG00015024742) #7	wdr4 (ENSSFOG00015025663) #8	si:ch211-140m22.7 (ENSSFOG00015003867)	ENSSFOG00015032139 #9	pknox1.1 (ENSSFOG00015003790) #10	ENSSFOG00015003689	pdxkb (ENSSFOG00015003619) #19	agpat3 (ENSSFOG00015027195) #22	TRAPPC10 (ENSSFOG00015003451) #23	pwp2h (ENSSFOG00015003316) #24	ENSSFOG00015028038	ENSSFOG00015003266	zgc:172295 (ENSSFOG00015003129)	FAM124A (ENSSFOG00015003098)	serpine3 (ENSSFOG00015003064)	ints6 (ENSSFOG00015002988)	wdfy2 (ENSSFOG00015002927)	dhrs12 (ENSSFOG00015002871)	ENSSFOG00015002862	ATP7B (ENSSFOG00015002792)	RUBCNL (ENSSFOG00015002750)	LRCH1 (ENSSFOG00015002580)	ENSSFOG00015028179
P. kingsleyae	MODERN SPECIES	467	gjb8 (ENSPKIG00000003687)	gja3 (ENSPKIG00000003667)	ZMYM2 (ENSPKIG00000003622)	pspc1 (ENSPKIG00000003578)	mphosph8 (ENSPKIG00000003488)	ENSPKIG00000003454	ENSPKIG00000003422 #21	PDE9A (ENSPKIG00000003345) #7	wdr4 (ENSPKIG00000003403) #8	ENSPKIG00000003314	ENSPKIG00000003299 #9	pknox1.1 (ENSPKIG00000003263) #10	TMPRSS3 (ENSPKIG00000003233)	ENSPKIG00000003013	pdxkb (ENSPKIG00000002898) #19	agpat3 (ENSPKIG00000002841) #22	TRAPPC10 (ENSPKIG00000002787) #23	pwp2h (ENSPKIG00000002693) #24
Clupeocephala	ANCESTRAL SPECIES	23	ENSGT00940000158231.k	ENSGT00940000158406	ENSGT00510000051617	ENSGT00940000155131	ENSGT00390000011821 #21	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000008902.kb	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00940000158589.b.a	ENSGT00940000173884	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000163587.a.b.a.d.b	ENSGT01000000214434.B.a.a	ENSGT00590000083134.a.a	ENSGT00940000160941	ENSGT00390000016655.a.a.b	ENSGT00940000169295	ENSGT00940000158527	ENSGT00940000163978	ENSGT00940000160585	ENSGT00940000159528	ENSGT01040000240539.b	ENSGT00390000011864	ENSGT01050000244937.a.a	ENSGT00390000010170.a.b	ENSGT00390000003338
Euteleosteomorpha	ANCESTRAL SPECIES	29	ENSGT00940000158231.k	ENSGT00940000158406	ENSGT00510000051617	ENSGT00940000155131	ENSGT00390000011821 #21	ENSGT00940000157240	ENSGT00940000159245	ENSGT00940000155587.a.b #7	ENSGT00390000012174 #8	ENSGT00390000008902.kb	ENSGT00390000012196 #9	ENSGT00940000159505 #10	ENSGT00940000158589.b.a	ENSGT00940000173884	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00940000154486.b.b.a.b	ENSGT00940000154486.b.a.a.b.e.a.a.a	ENSGT00390000016151	ENSGT00510000049102	ENSGT00940000160532.h	ENSGT00390000013151.a.a.b	ENSGT00940000160639.b.a.b.a	ENSGT00940000181338	ENSGT00950000182860.a.b.b	ENSGT00390000006631	ENSGT00950000183208.A.c.b	ENSGT00940000157233.d	ENSGT00940000158526	ENSGT00940000158539.a
Acanthomorphata	ANCESTRAL SPECIES	51	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000154610.e.a	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00940000154486.b.b.a.b	ENSGT00940000154486.b.a.a.b.e.a.a.a	ENSGT00390000016151	ENSGT00510000049102	ENSGT00940000160532.h	ENSGT00390000013151.a.a.b	ENSGT00940000160639.b.a.b.a	ENSGT00940000181338	ENSGT00950000182860.a.b.b	ENSGT00390000006631	ENSGT00950000183208.A.c.b	ENSGT00940000157233.d	ENSGT00940000158526	ENSGT00940000158539.a
Cod	MODERN SPECIES	12	ENSGMOG00000023772	ENSGMOG00000000660	ENSGMOG00000006042	ENSGMOG00000003612	ENSGMOG00000003590	ENSGMOG00000003578	ENSGMOG00000001333	ENSGMOG00000001477	ENSGMOG00000001491	ENSGMOG00000019956	gmppaa (ENSGMOG00000012792)	ENSGMOG00000012752	asic4a (ENSGMOG00000012740)	CHPF (ENSGMOG00000012737)	ENSGMOG00000012733 #19	ENSGMOG00000012727 #22	ENSGMOG00000013984	ENSGMOG00000013967	SYTL5 (ENSGMOG00000003889)	srpx (ENSGMOG00000003854)	ENSGMOG00000003765	OTC (ENSGMOG00000003743)	gpr161b (ENSGMOG00000003731)	ENSGMOG00000003651	mpc2b (ENSGMOG00000003638)	RPL24 (ENSGMOG00000003627)	ENSGMOG00000027269	ENSGMOG00000027391	nxpe3 (ENSGMOG00000022197)	nxpe3 (ENSGMOG00000029131)	me3 (ENSGMOG00000011631)
Euacanthomorphacea	ANCESTRAL SPECIES	35	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000154610.e.a	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00940000154486.b.b.a.b	ENSGT00940000154486.b.a.a.b.e.a.a.a	ENSGT00390000016151	ENSGT00510000049102	ENSGT00940000160532.h
Percomorphaceae	ANCESTRAL SPECIES	29	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e	ENSGT00940000158239.a.a	ENSGT00940000155861.C.f
Tiger tail seahorse	MODERN SPECIES	313	NXPH2 (ENSHCOG00000019064)	spoplb (ENSHCOG00000019050)	HNMT (ENSHCOG00000019039)	hnmt (ENSHCOG00000019017)	THSD7B (ENSHCOG00000018994)	cxcr4a (ENSHCOG00000018981)	dars1 (ENSHCOG00000018964)	ENSHCOG00000018915	pnkd (ENSHCOG00000018894)	gmppaa (ENSHCOG00000018883)	ENSHCOG00000018849	ENSHCOG00000018842	asic4a (ENSHCOG00000018829)	CHPF (ENSHCOG00000018799)	pdxka (ENSHCOG00000018782) #19	agpat3 (ENSHCOG00000018746) #22	ENSHCOG00000018719	ENSHCOG00000018675	ENSHCOG00000018666	ENSHCOG00000018646	ENSHCOG00000018634	ENSHCOG00000018620	fzd7b (ENSHCOG00000018538)	ALS2 (ENSHCOG00000018508)	MRAS (ENSHCOG00000018456)	tmem177 (ENSHCOG00000018441)	ptpn4a (ENSHCOG00000018430)	epb41l5 (ENSHCOG00000018374)	nrp2b (ENSHCOG00000018329)	ENSHCOG00000018273	ENSHCOG00000018260
Percomorphaceae_B	ANCESTRAL SPECIES	17	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183023.A.e.b	ENSGT00950000183048.b.b.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051
Ovalentaria	ANCESTRAL SPECIES	14	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183023.A.e.b	ENSGT00950000183048.b.b.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051
Ovalentaria_B	ANCESTRAL SPECIES	12	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183048.b.b.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051	ENSGT00940000154389.a
Pomacentridae	ANCESTRAL SPECIES	17	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183048.b.b.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00390000016051.b	ENSGT00940000159552	ENSGT00390000006051	ENSGT00940000154389.a
Pomacentridae_A	ANCESTRAL SPECIES	14	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183048.b.b.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00390000016051.b	ENSGT00940000159552	ENSGT00390000006051	ENSGT00940000154389.a
Amphiprion	ANCESTRAL SPECIES	8	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a.g	ENSGT00950000183023.A.f.a.a.a.h.b	ENSGT01030000234640.a.a.c.a.kb	ENSGT01030000234640.a.a.c.a.lb	ENSGT00950000183023.A.e.a	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00390000016051.b	ENSGT00940000159552	ENSGT00390000006051
Orange clownfish	MODERN SPECIES	3	NXPH2 (ENSAPEG00000011318)	spoplb (ENSAPEG00000011324)	HNMT (ENSAPEG00000011351)	hnmt (ENSAPEG00000011365)	THSD7B (ENSAPEG00000011397)	cxcr4a (ENSAPEG00000011520)	dars1 (ENSAPEG00000011547)	TMBIM1 (ENSAPEG00000011612)	pnkd (ENSAPEG00000011710)	gmppaa (ENSAPEG00000011726)	ENSAPEG00000011797	ENSAPEG00000011810	asic4a (ENSAPEG00000011839)	CHPF (ENSAPEG00000011882)	pdxka (ENSAPEG00000011906) #19	agpat3 (ENSAPEG00000011978) #22	ENSAPEG00000012003	ENSAPEG00000012020	ENSAPEG00000012079	ENSAPEG00000012110	ENSAPEG00000012126	ENSAPEG00000012161	ENSAPEG00000012181	ENSAPEG00000012190	ENSAPEG00000012219	fzd7b (ENSAPEG00000012268)	ALS2 (ENSAPEG00000012283)	SERP2 (ENSAPEG00000012407)	tsc22d1 (ENSAPEG00000012423)	gtf2f2b (ENSAPEG00000012444)	kctd4 (ENSAPEG00000012458)
Clown anemonefish	MODERN SPECIES	620																agpat3 (ENSAOCG00000011262) #22	ENSAOCG00000011237
Spiny chromis	MODERN SPECIES	1569													asic4b (ENSAPOG00000006339)	CHPF (ENSAPOG00000006377)	pdxka (ENSAPOG00000006426) #19	agpat3 (ENSAPOG00000006485) #22	ENSAPOG00000006502	ENSAPOG00000006534	ENSAPOG00000006570	ENSAPOG00000006583	fzd7b (ENSAPOG00000006603)
Bicolor damselfish	MODERN SPECIES	327				HNMT (ENSSPAG00000006872)	hnmt (ENSSPAG00000006885)	THSD7B (ENSSPAG00000006929)	cxcr4a (ENSSPAG00000006989)	dars1 (ENSSPAG00000007022)	TMBIM1 (ENSSPAG00000007061)	pnkd (ENSSPAG00000007083)	gmppaa (ENSSPAG00000007113)	ENSSPAG00000007186	asic4a (ENSSPAG00000007214)	CHPF (ENSSPAG00000007363)	pdxka (ENSSPAG00000007386) #19	agpat3 (ENSSPAG00000007464) #22	ENSSPAG00000007496	ENSSPAG00000007514	ENSSPAG00000007558	ENSSPAG00000007590	ENSSPAG00000007614	ENSSPAG00000007642	fzd7b (ENSSPAG00000007646)	ENSSPAG00000007653	SERP2 (ENSSPAG00000007674)	ENSSPAG00000007686	tsc22d1 (ENSSPAG00000007688)	gtf2f2b (ENSSPAG00000007713)	kctd4 (ENSSPAG00000007959)	tpt1 (ENSSPAG00000007967)	RANBP2 (ENSSPAG00000008000)
Cichlidae	ANCESTRAL SPECIES	14	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT01030000234748	ENSGT00940000157018	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a.p.b.a	ENSGT00950000183023.A.f.a.b.a.a.a.p.b.b	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183048.b.b.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051	ENSGT00940000154389.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	15	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT01030000234748	ENSGT00940000157018	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00950000183023.A.f.a.b.a.a.a.p.b.a.b	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a.p.b.a.a.b	ENSGT00950000183023.A.f.a.b.a.a.a.p.b.b	ENSGT00950000183023.A.f.a.a.a.e.a	ENSGT00950000183023.A.f.a.a.a.f.b.a	ENSGT00950000183023.A.f.a.a.a.f.a.b	ENSGT00950000183023.A.f.a.a.a.f.b.b	ENSGT00950000183023.A.f.a.a.a.e.b	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183048.b.b.b.c.a.b.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a
Nile tilapia	MODERN SPECIES	7	NXPH2 (ENSONIG00000004436)	spoplb (ENSONIG00000004430)	HNMT (ENSONIG00000004429)	hnmt (ENSONIG00000004424)	THSD7B (ENSONIG00000004411)	dars1 (ENSONIG00000004402)	cxcr4a (ENSONIG00000004410)	TMBIM1 (ENSONIG00000004393)	pnkd (ENSONIG00000004389)	gmppaa (ENSONIG00000004381)	ENSONIG00000031518	ENSONIG00000032910	asic4a (ENSONIG00000004379)	chpf (ENSONIG00000031746)	pdxka (ENSONIG00000004377) #19	agpat3 (ENSONIG00000004371) #22	ENSONIG00000029673	ENSONIG00000028251	ENSONIG00000032355	ENSONIG00000041688	ENSONIG00000035989	ENSONIG00000038917	ENSONIG00000032188	ENSONIG00000037501	ENSONIG00000038658	ENSONIG00000027158	ENSONIG00000036012	ENSONIG00000043036	ENSONIG00000035483	ENSONIG00000031729	ENSONIG00000033283
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	14	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT01030000234748	ENSGT00940000157018	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00950000183023.A.f.a.b.a.a.a.p.b.a.b	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a.p.b.b	ENSGT00950000183023.A.f.a.a.a.e.a	ENSGT00950000183023.A.f.a.a.a.f.b.a	ENSGT00950000183023.A.f.a.a.a.f.a.b	ENSGT00950000183023.A.f.a.a.a.f.b.b	ENSGT00950000183023.A.f.a.a.a.e.b	ENSGT01030000234640.a.a.c.a	ENSGT00950000183048.b.b.b.c.a.a.b.a	ENSGT00950000183023.A.e.a	ENSGT00950000183048.b.b.b.c.a.b.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a
Haplochromini	ANCESTRAL SPECIES	19	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT01030000234748	ENSGT00940000157018	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00950000183023.A.f.a.b.a.a.a.p.b.a.b	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a.p.b.b	ENSGT00950000183023.A.f.a.a.a.e.a	ENSGT00950000183023.A.f.a.a.a.f.b.a	ENSGT00950000183023.A.f.a.a.a.f.a.b	ENSGT00950000183023.A.f.a.a.a.f.b.b	ENSGT00950000183023.A.f.a.a.a.e.b	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183048.b.b.b.c.a.b.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b
Haplochromini_A	ANCESTRAL SPECIES	19	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT01030000234748	ENSGT00940000157018	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00950000183023.A.f.a.b.a.a.a.p.b.a.b	ENSGT00950000183023.A.f.a.b.a.a.a.p.b.a.a.a	ENSGT00950000183023.A.f.a.a.a.f.a.a	ENSGT00950000183023.A.f.a.b.a.a.a.p.b.b	ENSGT00950000183023.A.f.a.a.a.e.a	ENSGT00950000183023.A.f.a.a.a.f.b.a	ENSGT00950000183023.A.f.a.a.a.f.a.b	ENSGT00950000183023.A.f.a.a.a.f.b.b	ENSGT00950000183023.A.f.a.a.a.e.b	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183048.b.b.b.c.a.a.a.a.b	ENSGT00950000183048.b.b.b.c.a.a.a.a.a	ENSGT00950000183048.b.b.b.c.a.b.b	ENSGT00940000158239.a.a.b
Haplochromini_B	ANCESTRAL SPECIES	39	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT01030000234748	ENSGT00940000157018	ENSGT00940000176971.c.d	ENSGT00950000182996.b.b.c.b.b.a.b.d.a.b	ENSGT00950000182996.b.b.c.b.b.a.b.d.a.a	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00950000183023.A.f.a.b.a.a.a.o	ENSGT00950000183023.A.f.a.a.a.f.a.a	ENSGT00950000183023.A.f.a.b.a.a.a.p.b.b.c.b.a.b.b.a	ENSGT00950000183023.A.f.a.b.a.a.a.p.b.b.c.a.a	ENSGT00950000183023.A.f.a.b.a.a.a.p.b.b.c.b.a.a.b.b
Eastern happy	MODERN SPECIES	7	hnmt (ENSACLG00000021849)	ENSACLG00000021834	THSD7B (ENSACLG00000021759)	cxcr4a (ENSACLG00000021741)	TMBIM1 (ENSACLG00000021718)	dars1 (ENSACLG00000021690)	pnkd (ENSACLG00000021665)	ENSACLG00000021654	gmppaa (ENSACLG00000021605)	ENSACLG00000021575	ENSACLG00000021532	ENSACLG00000021487	asic4a (ENSACLG00000021434)	CHPF (ENSACLG00000021414)	pdxka (ENSACLG00000021373) #19	agpat3 (ENSACLG00000021331) #22	ENSACLG00000021324	ENSACLG00000021321	ENSACLG00000021301	ENSACLG00000021256	ENSACLG00000021232	ENSACLG00000021211	ENSACLG00000021166	ENSACLG00000021142	ENSACLG00000021112	ENSACLG00000021094	ENSACLG00000021087	ENSACLG00000021057	ENSACLG00000021020	ENSACLG00000020995	ENSACLG00000020982
Zebra mbuna	MODERN SPECIES	1098	HNMT (ENSMZEG00005012675)	hnmt (ENSMZEG00005012631)	THSD7B (ENSMZEG00005012606)	cxcr4a (ENSMZEG00005012580)	dars1 (ENSMZEG00005012535)	TMBIM1 (ENSMZEG00005012526)	pnkd (ENSMZEG00005012514)	ENSMZEG00005012505	gmppaa (ENSMZEG00005012445)	ENSMZEG00005012418	ENSMZEG00005012394	ENSMZEG00005012376	asic4a (ENSMZEG00005012361)	CHPF (ENSMZEG00005012350)	pdxka (ENSMZEG00005012329) #19	agpat3 (ENSMZEG00005012307) #22	ENSMZEG00005012303	ENSMZEG00005012289	ENSMZEG00005012277	ENSMZEG00005012262	ENSMZEG00005012254	ENSMZEG00005012245	ENSMZEG00005012233	ENSMZEG00005012221	ENSMZEG00005012213	ENSMZEG00005012200	ENSMZEG00005012178	ENSMZEG00005012161	ENSMZEG00005012153	ENSMZEG00005012145	ENSMZEG00005012138
P. nyererei	MODERN SPECIES	458	NXPH2 (ENSPNYG00000016633)	spoplb (ENSPNYG00000016589)	HNMT (ENSPNYG00000016568)	hnmt (ENSPNYG00000016548)	THSD7B (ENSPNYG00000016476)	ENSPNYG00000016450	cxcr4a (ENSPNYG00000016443)	dars1 (ENSPNYG00000016403)	TMBIM1 (ENSPNYG00000016371)	pnkd (ENSPNYG00000016327)	ENSPNYG00000016303	gmppaa (ENSPNYG00000016247)	asic4a (ENSPNYG00000016210)	CHPF (ENSPNYG00000016189)	pdxka (ENSPNYG00000016147) #19	agpat3 (ENSPNYG00000016113) #22	ENSPNYG00000016085	ENSPNYG00000016073	ENSPNYG00000016037	ENSPNYG00000016025	ENSPNYG00000015991
Burton s mouthbrooder	MODERN SPECIES	298	ugt1b1 (ENSHBUG00000001225)	NXPH2 (ENSHBUG00000001226)	spoplb (ENSHBUG00000001227)	HNMT (ENSHBUG00000001228)	hnmt (ENSHBUG00000001229)	THSD7B (ENSHBUG00000001230)	cxcr4a (ENSHBUG00000001231)	dars1 (ENSHBUG00000001232)	TMBIM1 (ENSHBUG00000001233)	pnkd (ENSHBUG00000001234)	ENSHBUG00000001235	gmppaa (ENSHBUG00000001236)	asic4a (ENSHBUG00000001237)	CHPF (ENSHBUG00000001238)	pdxka (ENSHBUG00000001239) #19	agpat3 (ENSHBUG00000001240) #22	ENSHBUG00000001241	ENSHBUG00000001242
Lyretail cichlid	MODERN SPECIES	350	ugt1b1 (ENSNBRG00000020375)	NXPH2 (ENSNBRG00000020368)	spoplb (ENSNBRG00000020337)	ENSNBRG00000020316	hnmt (ENSNBRG00000020241)	THSD7B (ENSNBRG00000020121)	cxcr4a (ENSNBRG00000020093)	dars1 (ENSNBRG00000020068)	TMBIM1 (ENSNBRG00000020048)	pnkd (ENSNBRG00000020031)	ENSNBRG00000020021	gmppaa (ENSNBRG00000019989)	asic4a (ENSNBRG00000019966)	CHPF (ENSNBRG00000019953)	pdxka (ENSNBRG00000019937) #19	agpat3 (ENSNBRG00000019907) #22	ENSNBRG00000019875	ENSNBRG00000019863	ENSNBRG00000019830
Midas cichlid	MODERN SPECIES	202											gmppaa (ENSACIG00000009653)	ENSACIG00000009683	asic4a (ENSACIG00000009693)	CHPF (ENSACIG00000009720)	pdxka (ENSACIG00000009733) #19	agpat3 (ENSACIG00000009771) #22	ENSACIG00000009796	ENSACIG00000009811
Atherinomorphae	ANCESTRAL SPECIES	13	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT01030000234748	ENSGT00940000157018	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183023.A.e.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051	ENSGT00940000154389.a
Oryzias	ANCESTRAL SPECIES	10	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00390000008812.a.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00390000001856	ENSGT00940000155126.s.b	ENSGT00940000166348	ENSGT00950000183214.a.b.a.b.f.a	ENSGT00940000155270.i.a	ENSGT00940000156332	ENSGT00940000157211.l	ENSGT00390000010354	ENSGT00390000011821 #21	ENSGT00940000159245	ENSGT00390000012174 #8
Oryzias_b	ANCESTRAL SPECIES	40	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT01030000234748	ENSGT00940000157018	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00390000008812.a.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00390000001856	ENSGT00940000155126.s.b	ENSGT00940000166348	ENSGT00950000183214.a.b.a.b.f.a	ENSGT00940000155270.i.a	ENSGT00940000156332	ENSGT00940000157211.l	ENSGT00390000010354	ENSGT00390000011821 #21	ENSGT00940000159245	ENSGT00390000012174 #8
Indian medaka	MODERN SPECIES	18	NXPH2 (ENSOMEG00000015619)	spoplb (ENSOMEG00000015644)	ENSOMEG00000015657	HNMT (ENSOMEG00000015670)	hnmt (ENSOMEG00000015708)	THSD7B (ENSOMEG00000015867)	cxcr4a (ENSOMEG00000015896)	dars1 (ENSOMEG00000015997)	TMBIM1 (ENSOMEG00000016060)	pnkd (ENSOMEG00000016106)	ENSOMEG00000016114	gmppaa (ENSOMEG00000016142)	asic4a (ENSOMEG00000016180)	CHPF (ENSOMEG00000016218)	pdxka (ENSOMEG00000016303) #19	agpat3 (ENSOMEG00000016351) #22	ENSOMEG00000016384	cdk5r2b (ENSOMEG00000016402)	fev (ENSOMEG00000016410)	cryba2b (ENSOMEG00000016427)	umps (ENSOMEG00000016459)	fn1a (ENSOMEG00000016544)	ENSOMEG00000016575	ENSOMEG00000016682	ENSOMEG00000016701	nrp2b (ENSOMEG00000016727)	epb41l5 (ENSOMEG00000016756)	ENSOMEG00000016774	ptpn4a (ENSOMEG00000016814)	tmem177 (ENSOMEG00000016831)	ENSOMEG00000016910 #21
Javanese ricefish	MODERN SPECIES	13	NXPH2 (ENSOJAG00000023175)	SPOPL (ENSOJAG00000023187)	HNMT (ENSOJAG00000023228)	hnmt (ENSOJAG00000023238)	THSD7B (ENSOJAG00000023324)	ENSOJAG00000023450	cxcr4a (ENSOJAG00000023451)	dars1 (ENSOJAG00000023468)	ENSOJAG00000023512	pnkd (ENSOJAG00000023519)	ENSOJAG00000023534	asic4a (ENSOJAG00000023538)	ENSOJAG00000023541	CHPF (ENSOJAG00000023548)	PDXK (ENSOJAG00000023552) #19	agpat3 (ENSOJAG00000023558) #22	ENSOJAG00000023565	ENSOJAG00000023567	fev (ENSOJAG00000023571)	cryba2b (ENSOJAG00000023576)	ENSOJAG00000023783	ENSOJAG00000023785	ENSOJAG00000023787	nrp2b (ENSOJAG00000023793)	ENSOJAG00000023800	epb41l5 (ENSOJAG00000023802)	ENSOJAG00000023812	tmem177 (ENSOJAG00000023817)	ENSOJAG00000023821 #21	slc37a1 (ENSOJAG00000023831)	ENSOJAG00000023837
Oryzias_a	ANCESTRAL SPECIES	58	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000008812.a.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00390000001856	ENSGT00940000155126.s.b	ENSGT00940000166348	ENSGT00950000183214.a.b.a.b.f.a	ENSGT00940000155270.i.a	ENSGT00940000156332	ENSGT00940000157211.l	ENSGT00390000010354	ENSGT00940000159245	ENSGT00390000012174 #8	ENSGT00390000008902.kb	ENSGT00940000175678
Japanese Medaka HdrR	MODERN SPECIES	13	hnmt (ENSORLG00000027332)	hnmt (ENSORLG00000020490)	THSD7B (ENSORLG00000020495)	ENSORLG00000028488	ENSORLG00000024098	cxcr4a (ENSORLG00000029079)	dars1 (ENSORLG00000026356)	TMBIM1 (ENSORLG00000020503)	pnkd (ENSORLG00000026276)	gmppaa (ENSORLG00000020513)	ENSORLG00000025186	asic4a (ENSORLG00000020519)	ENSORLG00000029901	CHPF (ENSORLG00000020522)	pdxka (ENSORLG00000020526) #19	agpat3 (ENSORLG00000020534) #22	cdk5r2b (ENSORLG00000020537)	fev (ENSORLG00000029519)	cryba2b (ENSORLG00000020544)	umps (ENSORLG00000020552)	fn1a (ENSORLG00000020577)	ENSORLG00000028926	ENSORLG00000029898	ENSORLG00000023693	ENSORLG00000022281	ENSORLG00000029727	ENSORLG00000026352	ENSORLG00000021788	ENSORLG00000025687	ENSORLG00000022794	ENSORLG00000028758
Chinese medaka	MODERN SPECIES	1113														CHPF (ENSOSIG00000012568)	pdxka (ENSOSIG00000012569) #19	agpat3 (ENSOSIG00000012573) #22	cdk5r2b (ENSOSIG00000012576)	fev (ENSOSIG00000012577)	cryba2b (ENSOSIG00000012579)	umps (ENSOSIG00000012582)	ENSOSIG00000015474	ENSOSIG00000015475
Cyprinodontiformes	ANCESTRAL SPECIES	15	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT01030000234748	ENSGT00940000157018	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183023.A.e.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051	ENSGT00940000178293
Aplocheiloidei	ANCESTRAL SPECIES	6	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT01030000234748	ENSGT00940000157018	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051	ENSGT00940000154389.a	ENSGT00940000153518.d.b.a.a
Mangrove rivulus	MODERN SPECIES	54	ugt1b1 (ENSKMAG00000015328)	NXPH2 (ENSKMAG00000015309)	spoplb (ENSKMAG00000015248)	HNMT (ENSKMAG00000015222)	hnmt (ENSKMAG00000015177)	THSD7B (ENSKMAG00000015079)	cxcr4a (ENSKMAG00000015064)	dars1 (ENSKMAG00000014958)	ENSKMAG00000014903	pnkd (ENSKMAG00000014879)	ENSKMAG00000014865	gmppaa (ENSKMAG00000014796)	asic4a (ENSKMAG00000014750)	CHPF (ENSKMAG00000014718)	pdxka (ENSKMAG00000014678) #19	agpat3 (ENSKMAG00000014631) #22	ENSKMAG00000014605	ENSKMAG00000014580	ENSKMAG00000014550	ENSKMAG00000014525	ENSKMAG00000014509
Turquoise killifish	MODERN SPECIES	1623	ENSNFUG00015023756	DARS (ENSNFUG00015023759)	cxcr4a (ENSNFUG00015023775)	TMBIM1 (ENSNFUG00015023777)	pnkd (ENSNFUG00015023779)	GMPPAA (ENSNFUG00015023787)	ENSNFUG00015023875	ENSNFUG00015023879	ENSNFUG00015023882	ENSNFUG00015023884	ENSNFUG00015023886	ENSNFUG00015023890	ASIC4 (ENSNFUG00015023901)	CHPFA (ENSNFUG00015023919)	pdxka (ENSNFUG00015023923) #19	AGPAT3 (ENSNFUG00015023944) #22	ENSNFUG00015023950	ENSNFUG00015023952	ENSNFUG00015023953	ENSNFUG00015023955	ENSNFUG00015023958	ENSNFUG00015023961	ENSNFUG00015004783	fzd7b (ENSNFUG00015004789)	ALS2 (ENSNFUG00015004847)	SERP2 (ENSNFUG00015004953)	zgc:65895 (ENSNFUG00015004966)	tsc22d1 (ENSNFUG00015004972)	KCTD4 (ENSNFUG00015004978)	gtf2f2b (ENSNFUG00015004982)	ENSNFUG00015004998
Cyprinodontoidei	ANCESTRAL SPECIES	13	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT01030000234748	ENSGT00940000157018	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183023.A.e.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051	ENSGT00940000178293	ENSGT00940000154389.a
NAME_4	ANCESTRAL SPECIES	131													ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183023.A.e.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051	ENSGT00940000178293	ENSGT00940000154389.a	ENSGT00940000153518.d.b.a.a
Mummichog	MODERN SPECIES	410													asic4a (ENSFHEG00000011782)	CHPF (ENSFHEG00000011798)	pdxka (ENSFHEG00000012130) #19	agpat3 (ENSFHEG00000012194) #22	ENSFHEG00000012232	ENSFHEG00000012252	ENSFHEG00000012259	ENSFHEG00000012268	ENSFHEG00000012302	ENSFHEG00000012318	ENSFHEG00000012338
Sheepshead minnow	MODERN SPECIES	118													asic4a (ENSCVAG00000016801)	CHPF (ENSCVAG00000016806)	PDXK (ENSCVAG00000016838) #19	agpat3 (ENSCVAG00000016855) #22	ENSCVAG00000016889	bcam (ENSCVAG00000016928)	rps19 (ENSCVAG00000016949)	cadm4 (ENSCVAG00000016999)	si:ch211-79k12.1 (ENSCVAG00000017011)	taf12 (ENSCVAG00000017061)	rab42b (ENSCVAG00000017064)	ENSCVAG00000017072	cited4b (ENSCVAG00000017089)	SCMH1 (ENSCVAG00000017111)	ENSCVAG00000017124	med18 (ENSCVAG00000017138)	cyp4t8 (ENSCVAG00000017148)	ppp1r8b (ENSCVAG00000017182)	THEMIS2 (ENSCVAG00000017238)
Poeciliinae	ANCESTRAL SPECIES	25	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT01030000234748	ENSGT00940000157018	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a.i.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183023.A.e.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051	ENSGT00940000154389.a	ENSGT00940000153518.d.b.a.a
Poecilia	ANCESTRAL SPECIES	13	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT01030000234748	ENSGT00940000157018	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a.i.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183023.A.e.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051	ENSGT00940000154389.a	ENSGT00940000153518.d.b.a.a
NAME_6	ANCESTRAL SPECIES	80	ENSGT00910000144271.C.k.a	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953.m	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a.i.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183023.A.e.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051	ENSGT00940000154389.a	ENSGT00940000153518.d.b.a.a
Amazon molly	MODERN SPECIES	335														CHPF (ENSPFOG00000008350)	pdxka (ENSPFOG00000008244) #19	agpat3 (ENSPFOG00000008059) #22	ENSPFOG00000020194	ENSPFOG00000008045	or64d1 (ENSPFOG00000022223)	ENSPFOG00000021955	ENSPFOG00000020193	fzd7b (ENSPFOG00000020192)	ENSPFOG00000007870	SERP2 (ENSPFOG00000007861)	zgc:65895 (ENSPFOG00000007803)	kctd4 (ENSPFOG00000020191)	kctd4 (ENSPFOG00000020190)	ENSPFOG00000007771	tpt1 (ENSPFOG00000007677)	RANBP2 (ENSPFOG00000007377)	ENSPFOG00000007252
Sailfin molly	MODERN SPECIES	389														CHPF (ENSPLAG00000012132)	pdxka (ENSPLAG00000012167) #19	agpat3 (ENSPLAG00000012197) #22	ENSPLAG00000012204	ENSPLAG00000012228	ENSPLAG00000012248	ENSPLAG00000012252	ENSPLAG00000012264	fzd7b (ENSPLAG00000012273)	ALS2 (ENSPLAG00000012315)	SERP2 (ENSPLAG00000012337)	tsc22d1 (ENSPLAG00000012340)	kctd4 (ENSPLAG00000012351)	gtf2f2b (ENSPLAG00000012356)	tpt1 (ENSPLAG00000012361)	RANBP2 (ENSPLAG00000012373)
Guppy	MODERN SPECIES	450	spoplb (ENSPREG00000014612)	HNMT (ENSPREG00000014601)	hnmt (ENSPREG00000014586)	ENSPREG00000014576	THSD7B (ENSPREG00000014519)	cxcr4a (ENSPREG00000014489)	dars1 (ENSPREG00000014466)	TMBIM1 (ENSPREG00000014447)	pnkd (ENSPREG00000014434)	ENSPREG00000014419	gmppaa (ENSPREG00000014364)	asic4a (ENSPREG00000014248)	ENSPREG00000014242	CHPF (ENSPREG00000014235)	pdxka (ENSPREG00000014190) #19	agpat3 (ENSPREG00000014169) #22	ENSPREG00000014153	ENSPREG00000014140	or64d1 (ENSPREG00000014132)	ENSPREG00000014109	ENSPREG00000014087	fzd7b (ENSPREG00000014079)	ALS2 (ENSPREG00000014013)	zgc:65895 (ENSPREG00000013994)	tsc22d1 (ENSPREG00000013988)	ENSPREG00000013982	kctd4 (ENSPREG00000013980)	gtf2f2b (ENSPREG00000013804)	tpt1 (ENSPREG00000013599)	RANBP2 (ENSPREG00000013331)	ENSPREG00000013239
Platyfish	MODERN SPECIES	21	ENSXMAG00000023781	ugt1b1 (ENSXMAG00000004967)	NXPH2 (ENSXMAG00000019671)	spoplb (ENSXMAG00000011594)	HNMT (ENSXMAG00000011623)	hnmt (ENSXMAG00000028051)	THSD7B (ENSXMAG00000011636)	cxcr4a (ENSXMAG00000003684)	dars1 (ENSXMAG00000003657)	TMBIM1 (ENSXMAG00000024690)	ENSXMAG00000023182	gmppaa (ENSXMAG00000003625)	asic4a (ENSXMAG00000003624)	CHPF (ENSXMAG00000003616)	PDXK (ENSXMAG00000003609) #19	agpat3 (ENSXMAG00000003600) #22	ENSXMAG00000020392	ENSXMAG00000003594	ENSXMAG00000027179	or64d1 (ENSXMAG00000019623)	ENSXMAG00000024839	ENSXMAG00000020391	fzd7b (ENSXMAG00000020390)	ALS2 (ENSXMAG00000003567)	ENSXMAG00000003558	tsc22d1 (ENSXMAG00000003554)	kctd4 (ENSXMAG00000020389)	gtf2f2b (ENSXMAG00000003551)	tpt1 (ENSXMAG00000028654)	RANBP2 (ENSXMAG00000003519)	ENSXMAG00000023681
Percomorphaceae_C	ANCESTRAL SPECIES	13	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183023.A.e.b	ENSGT00950000183048.b.b.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051
Percomorphaceae_D	ANCESTRAL SPECIES	12	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183023.A.e.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00390000006051	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00940000154389.a	ENSGT00940000153518.d.b.b.w.a
Anabantaria	ANCESTRAL SPECIES	14	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT01030000234748	ENSGT00940000157018	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00390000006051	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00940000154389.a	ENSGT00940000153518.d.b.b.w.a	ENSGT00950000183078.a
Zig-zag eel	MODERN SPECIES	13	NXPH2 (ENSMAMG00000016931)	SPOPL (ENSMAMG00000016938)	hnmt (ENSMAMG00000016949)	hnmt (ENSMAMG00000028155)	hnmt (ENSMAMG00000016962)	THSD7B (ENSMAMG00000017095)	cxcr4b (ENSMAMG00000017149)	dars1 (ENSMAMG00000017160)	ENSMAMG00000017194	ENSMAMG00000027130	gmppaa (ENSMAMG00000017226)	ENSMAMG00000017283	asic4a (ENSMAMG00000017296)	CHPF (ENSMAMG00000027984)	ENSMAMG00000017323 #19	ENSMAMG00000017353 #22	ENSMAMG00000024930	ENSMAMG00000025171	ENSMAMG00000017484	ENSMAMG00000017553	ENSMAMG00000024374	ENSMAMG00000027536	ENSMAMG00000017610	ENSMAMG00000027227	ENSMAMG00000025125	ENSMAMG00000017668	ENSMAMG00000027750	ENSMAMG00000026622	ENSMAMG00000027484	ENSMAMG00000026289	ENSMAMG00000028534
Anabantoidei	ANCESTRAL SPECIES	13	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT01030000234748	ENSGT00940000157018	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00940000155861.C.f	ENSGT00390000006051	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00940000154389.a	ENSGT00940000153518.d.b.b.w.a	ENSGT00940000153518.d.b.a.a	ENSGT00390000012589	ENSGT00950000183078.a	ENSGT00690000101915.i.a	ENSGT00940000161312
Climbing perch	MODERN SPECIES	12	ENSATEG00000028653	ENSATEG00000026833	NXPH2 (ENSATEG00000003052)	SPOPL (ENSATEG00000003040)	HNMT (ENSATEG00000003011)	hnmt (ENSATEG00000002987)	THSD7B (ENSATEG00000002844)	cxcr4b (ENSATEG00000002835)	dars1 (ENSATEG00000002761)	ENSATEG00000002727	ENSATEG00000002712	GMPPA (ENSATEG00000002668)	asic4a (ENSATEG00000002639)	CHPF (ENSATEG00000025814)	ENSATEG00000002568 #19	ENSATEG00000002556 #22	ENSATEG00000002526	ENSATEG00000002509	ENSATEG00000027556	ENSATEG00000002439	ENSATEG00000025725	ENSATEG00000028963	ENSATEG00000029980	ENSATEG00000029854	ENSATEG00000026483	ENSATEG00000028331	ENSATEG00000027586	ENSATEG00000027532	ENSATEG00000026565	ENSATEG00000026073	ENSATEG00000027432
Siamese fighting fish	MODERN SPECIES	11	NXPH2 (ENSBSLG00000019840)	spoplb (ENSBSLG00000019786)	HNMT (ENSBSLG00000019759)	ENSBSLG00000019479	hnmt (ENSBSLG00000019428)	THSD7B (ENSBSLG00000018975)	cxcr4a (ENSBSLG00000018918)	TMBIM1 (ENSBSLG00000018889)	pnkd (ENSBSLG00000018723)	ENSBSLG00000018719	gmppaa (ENSBSLG00000018682)	dars1 (ENSBSLG00000018054)	asic4a (ENSBSLG00000017887)	CHPF (ENSBSLG00000017868)	pdxka (ENSBSLG00000017152) #19	agpat3 (ENSBSLG00000017041) #22	ENSBSLG00000017021	ENSBSLG00000017005	ENSBSLG00000016992	ENSBSLG00000016976	ENSBSLG00000016961	ENSBSLG00000016953	ENSBSLG00000016944	ENSBSLG00000016921	ENSBSLG00000016912	ENSBSLG00000016904	ENSBSLG00000016885	ENSBSLG00000016873	ENSBSLG00000016865	ENSBSLG00000016857	ENSBSLG00000016848
Carangaria	ANCESTRAL SPECIES	12	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183023.A.e.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00390000006051	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00940000154389.a.o.a	ENSGT00940000153518.d.b.b.w.a
Carangaria_A	ANCESTRAL SPECIES	11	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00390000006051	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00940000153518.d.b.a.a	ENSGT00390000012589	ENSGT00940000154389.a.o.a	ENSGT00940000153518.d.b.b.w.a	ENSGT00950000183078.a	ENSGT00690000101915.i.a
Seriola	ANCESTRAL SPECIES	34	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00950000183023.A.f.a.b.a.a.a.a	ENSGT00950000183023.A.f.a.b.a.a.a.b	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00390000006051	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b
Greater amberjack	MODERN SPECIES	21	ugt1b1 (ENSSDUG00000012351)	NXPH2 (ENSSDUG00000012361)	spoplb (ENSSDUG00000012367)	HNMT (ENSSDUG00000012388)	hnmt (ENSSDUG00000012396)	THSD7B (ENSSDUG00000012413)	cxcr4a (ENSSDUG00000012474)	dars1 (ENSSDUG00000012483)	TMBIM1 (ENSSDUG00000012513)	pnkd (ENSSDUG00000012538)	gmppaa (ENSSDUG00000012554)	ENSSDUG00000012634	asic4a (ENSSDUG00000012646)	CHPF (ENSSDUG00000012678)	pdxka (ENSSDUG00000012694) #19	agpat3 (ENSSDUG00000012729) #22	ENSSDUG00000012766	ENSSDUG00000012798	ENSSDUG00000012808	ENSSDUG00000012820	ENSSDUG00000012829	ENSSDUG00000012854	ENSSDUG00000012858	ENSSDUG00000012884	fzd7b (ENSSDUG00000012894)	ALS2 (ENSSDUG00000012907)	tpt1 (ENSSDUG00000013034)	ENSSDUG00000013051	tsc22d1 (ENSSDUG00000013067)	gtf2f2b (ENSSDUG00000013087)	kctd4 (ENSSDUG00000013143)
Yellowtail amberjack	MODERN SPECIES	2542													asic4a (ENSSLDG00000022741)	CHPF (ENSSLDG00000022733)	pdxka (ENSSLDG00000022697) #19	agpat3 (ENSSLDG00000022654) #22	ENSSLDG00000022616	ENSSLDG00000022590	ENSSLDG00000022571	ENSSLDG00000022554	ENSSLDG00000022546	ENSSLDG00000022529	ENSSLDG00000022516	ENSSLDG00000022505	ALS2 (ENSSLDG00000022428)	tpt1 (ENSSLDG00000022402)	ENSSLDG00000022398	tsc22d1 (ENSSLDG00000022390)	kctd4 (ENSSLDG00000022382)	gtf2f2b (ENSSLDG00000022352)
Barramundi perch	MODERN SPECIES	204	ugt1b1 (ENSLCAG00010011173)	ENSLCAG00010011175	NXPH2 (ENSLCAG00010011178)	spoplb (ENSLCAG00010011182)	HNMT (ENSLCAG00010011193)	hnmt (ENSLCAG00010011195)	THSD7B (ENSLCAG00010011213)	cxcr4a (ENSLCAG00010011228)	dars1 (ENSLCAG00010011290)	pnkd (ENSLCAG00010011550)	gmppaa (ENSLCAG00010011601)	ENSLCAG00010011644	asic4a (ENSLCAG00010011647)	CHPF (ENSLCAG00010011654)	pdxka (ENSLCAG00010011671) #19	agpat3 (ENSLCAG00010011701) #22	ENSLCAG00010011713	ENSLCAG00010011720	ENSLCAG00010011726	ENSLCAG00010011729	ENSLCAG00010011731	FZD7 (ENSLCAG00010011736)	ALS2 (ENSLCAG00010011744)	tpt1 (ENSLCAG00010011749)
Pleuronectoidei	ANCESTRAL SPECIES	9	ENSGT00910000144271.C	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183023.A.e.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00390000006051	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00940000154389.a.o.a	ENSGT00940000178293
Tongue sole	MODERN SPECIES	7	NXPH2 (ENSCSEG00000014974)	spoplb (ENSCSEG00000014860)	ENSCSEG00000014850	HNMT (ENSCSEG00000014836)	THSD7B (ENSCSEG00000014629)	ENSCSEG00000014599	cxcr4a (ENSCSEG00000013981)	dars1 (ENSCSEG00000013966)	ENSCSEG00000013961	pnkd (ENSCSEG00000013958)	ENSCSEG00000013951	gmppaa (ENSCSEG00000013921)	asic4a (ENSCSEG00000013878)	CHPF (ENSCSEG00000013861)	pdxka (ENSCSEG00000013844) #19	agpat3 (ENSCSEG00000013831) #22	ENSCSEG00000013817	ENSCSEG00000013813	ENSCSEG00000013802	ENSCSEG00000013794	ENSCSEG00000013770	ENSCSEG00000013746	ENSCSEG00000013741	ENSCSEG00000013737	fzd7b (ENSCSEG00000013735)	ENSCSEG00000013644	tpt1 (ENSCSEG00000013637)	ENSCSEG00000013630	stxbp5l (ENSCSEG00000013403)	poglut2 (ENSCSEG00000013373)	ENSCSEG00000013366
Turbot	MODERN SPECIES	5	ENSSMAG00000002168	ENSSMAG00000002426	NXPH2 (ENSSMAG00000023910)	SPOPL (ENSSMAG00000002460)	ENSSMAG00000002525	THSD7B (ENSSMAG00000002557)	CXCR4 (ENSSMAG00000006700)	dars1 (ENSSMAG00000006714)	ENSSMAG00000006792	ENSSMAG00000006812	gmppaa (ENSSMAG00000006829)	ENSSMAG00000006899	asic4a (ENSSMAG00000006912)	CHPF (ENSSMAG00000033841)	ENSSMAG00000006966 #19	ENSSMAG00000007002 #22	ENSSMAG00000031335	ENSSMAG00000027464	ENSSMAG00000007025	ENSSMAG00000007065	ENSSMAG00000037976	ENSSMAG00000007095	ENSSMAG00000028695	ENSSMAG00000007144	ENSSMAG00000007166	tpt1 (ENSSMAG00000026887)	ENSSMAG00000007293	ENSSMAG00000037836	ENSSMAG00000023827	ENSSMAG00000007317	kctd4 (ENSSMAG00000007327)
Eupercaria	ANCESTRAL SPECIES	25	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183023.A.e.b	ENSGT00950000183048.b.b.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051
Tetraodontidae	ANCESTRAL SPECIES		ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT01030000234748	ENSGT00940000157018	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a.y.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183023.A.e.b	ENSGT00950000183048.b.b.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051	ENSGT00940000154389.a	ENSGT00940000153518.d.b.a.a
Fugu	MODERN SPECIES		ugt1b1 (ENSTRUG00000007992)	NXPH2 (ENSTRUG00000008270)	spoplb (ENSTRUG00000008272)	HNMT (ENSTRUG00000008584)	hnmt (ENSTRUG00000008598)	THSD7B (ENSTRUG00000008734)	cxcr4a (ENSTRUG00000009000)	dars1 (ENSTRUG00000009030)	TMBIM1 (ENSTRUG00000009154)	pnkd (ENSTRUG00000009399)	ENSTRUG00000021998	gmppaa (ENSTRUG00000009542)	asic4a (ENSTRUG00000009778)	CHPF (ENSTRUG00000009970)	pdxka (ENSTRUG00000010041) #19	agpat3 (ENSTRUG00000021005) #22	ENSTRUG00000025642	ENSTRUG00000032432	ENSTRUG00000029291	ENSTRUG00000031223	ENSTRUG00000028183	ENSTRUG00000027979	ENSTRUG00000028600	ENSTRUG00000030906	ENSTRUG00000028132	ENSTRUG00000029013	ENSTRUG00000028200	ENSTRUG00000029468	ENSTRUG00000031072	ENSTRUG00000025861	ENSTRUG00000033090
Tetraodon	MODERN SPECIES	13	UGT1A1 (ENSTNIG00000013253)	ENSTNIG00000002406	NXPH2 (ENSTNIG00000010985)	spoplb (ENSTNIG00000010986)	HNMT (ENSTNIG00000010987)	hnmt (ENSTNIG00000010988)	THSD7B (ENSTNIG00000010989)	cxcr4a (ENSTNIG00000000918)	dars1 (ENSTNIG00000010990)	ENSTNIG00000010991	pnkd (ENSTNIG00000010992)	gmppaa (ENSTNIG00000010993)	asic4a (ENSTNIG00000010994)	CHPF (ENSTNIG00000005621)	pdxka (ENSTNIG00000005620) #19	agpat3 (ENSTNIG00000005619) #22	ENSTNIG00000002973	ENSTNIG00000006121	ENSTNIG00000000688	ENSTNIG00000001245	ENSTNIG00000000335	ENSTNIG00000004008	ENSTNIG00000000480	ENSTNIG00000003782	fzd7b (ENSTNIG00000003781)	ALS2 (ENSTNIG00000003780)	SERP2 (ENSTNIG00000019747)	tsc22d1 (ENSTNIG00000003779)	GTF2F2 (ENSTNIG00000004440)	tpt1 (ENSTNIG00000004439)	ENSTNIG00000000318
Eupecaria_A	ANCESTRAL SPECIES	24	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183023.A.e.b	ENSGT00950000183048.b.b.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051
Ballan wrasse	MODERN SPECIES	157	zeb2a (ENSLBEG00000001366)	gtdc1 (ENSLBEG00000001335)	acvr2aa (ENSLBEG00000001277)	ENSLBEG00000001241	kif5c (ENSLBEG00000001127)	arhgap15 (ENSLBEG00000001058)	ENSLBEG00000001033	gmppaa (ENSLBEG00000001003)	pnkd (ENSLBEG00000000985)	ENSLBEG00000000971	dars1 (ENSLBEG00000000879)	cxcr4a (ENSLBEG00000000869)	asic4a (ENSLBEG00000000829)	CHPF (ENSLBEG00000000783)	pdxka (ENSLBEG00000000742) #19	agpat3 (ENSLBEG00000000684) #22	ENSLBEG00000000607	ENSLBEG00000000560	ENSLBEG00000000497	ENSLBEG00000000464	fzd7b (ENSLBEG00000000434)	ENSLBEG00000000340	SERP2 (ENSLBEG00000000334)	zgc:65895 (ENSLBEG00000028055)	tsc22d1 (ENSLBEG00000028045)	kctd4 (ENSLBEG00000028038)	gtf2f2b (ENSLBEG00000028025)	tpt1 (ENSLBEG00000028007)	ENSLBEG00000028002	RANBP2 (ENSLBEG00000027979)	LIMS1 (ENSLBEG00000027941)
Eupecaria_B	ANCESTRAL SPECIES	24	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183023.A.e.b	ENSGT00950000183048.b.b.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051
Perciformes	ANCESTRAL SPECIES	23	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183048.b.b.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051	ENSGT00940000154389.a
Cottioidei	ANCESTRAL SPECIES	14	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183048.b.b.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051	ENSGT00940000154389.a	ENSGT00940000153518.d.b.b.w.a
Stickleback	MODERN SPECIES	16	gzm3.3 (ENSGACG00000007370)	ugt1b1 (ENSGACG00000007337)	NXPH2 (ENSGACG00000007335)	spoplb (ENSGACG00000007330)	HNMT (ENSGACG00000007323)	hnmt (ENSGACG00000007299)	THSD7B (ENSGACG00000007289)	cxcr4a (ENSGACG00000007282)	dars1 (ENSGACG00000007146)	TMBIM1 (ENSGACG00000007137)	pnkd (ENSGACG00000007119)	gmppaa (ENSGACG00000007062)	asic4a (ENSGACG00000007052)	CHPF (ENSGACG00000007044)	pdxka (ENSGACG00000007013) #19	agpat3 (ENSGACG00000006982) #22	ENSGACG00000006977	ENSGACG00000006976	ENSGACG00000006974	ENSGACG00000006973	ENSGACG00000006971	ENSGACG00000006969	ENSGACG00000006966	ENSGACG00000006963	ENSGACG00000006961	ENSGACG00000006957	ENSGACG00000006952	ENSGACG00000006948	ENSGACG00000006947	ENSGACG00000006943	ENSGACG00000006941
Lumpfish	MODERN SPECIES	13	ugt1b1 (ENSCLMG00005015833)	NXPH2 (ENSCLMG00005015828)	spoplb (ENSCLMG00005015808)	HNMT (ENSCLMG00005015807)	hnmt (ENSCLMG00005015806)	THSD7B (ENSCLMG00005015800)	cxcr4a (ENSCLMG00005015798)	dars1 (ENSCLMG00005013388)	TMBIM1 (ENSCLMG00005013360)	pnkd (ENSCLMG00005013359)	ENSCLMG00005013358	gmppaa (ENSCLMG00005013345)	asic4a (ENSCLMG00005013344)	CHPF (ENSCLMG00005013343)	pdxka (ENSCLMG00005013331) #19	agpat3 (ENSCLMG00005013326) #22	ENSCLMG00005013324	ENSCLMG00005013322	ENSCLMG00005013319	ENSCLMG00005013318	ENSCLMG00005013317	ENSCLMG00005013315	ENSCLMG00005013314	fzd7b (ENSCLMG00005013313)	ALS2 (ENSCLMG00005013043)	SERP2 (ENSCLMG00005013036)	ENSCLMG00005013035	kctd4 (ENSCLMG00005013034)	ENSCLMG00005013029	tpt1 (ENSCLMG00005013027)	RANBP2 (ENSCLMG00005009168)
Perciformes_a	ANCESTRAL SPECIES	23	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051	ENSGT00940000154389.a	ENSGT00940000153518.d.b.a.a	ENSGT00390000012589
Pike perch	MODERN SPECIES	57	ENSSLUG00000002304	ENSSLUG00000002294	HNMT (ENSSLUG00000002289)	hnmt (ENSSLUG00000002280)	THSD7B (ENSSLUG00000002165)	ENSSLUG00000002139	cxcr4a (ENSSLUG00000002135)	dars1 (ENSSLUG00000001741)	TMBIM1 (ENSSLUG00000001466)	pnkd (ENSSLUG00000025381)	ENSSLUG00000025377	gmppaa (ENSSLUG00000025367)	asic4a (ENSSLUG00000025338)	CHPF (ENSSLUG00000025325)	pdxka (ENSSLUG00000025317) #19	agpat3 (ENSSLUG00000025308) #22	ENSSLUG00000025305	ENSSLUG00000025304	ENSSLUG00000025303	fzd7b (ENSSLUG00000025301)	ENSSLUG00000025285	ENSSLUG00000025281	kctd4 (ENSSLUG00000025279)	ENSSLUG00000025275	tpt1 (ENSSLUG00000025273)	RANBP2 (ENSSLUG00000025010)	ENSSLUG00000024932	tmem223 (ENSSLUG00000024924)	GCC2 (ENSSLUG00000024921)	SLC5A7 (ENSSLUG00000024917)	CLDN14 (ENSSLUG00000024914)
Channel bull blenny	MODERN SPECIES	13	ugt1b1 (ENSCGOG00000005850)	NXPH2 (ENSCGOG00000005851)	spoplb (ENSCGOG00000005854)	HNMT (ENSCGOG00000005881)	hnmt (ENSCGOG00000005883)	THSD7B (ENSCGOG00000005888)	cxcr4a (ENSCGOG00000005904)	dars1 (ENSCGOG00000005933)	ENSCGOG00000007381	pnkd (ENSCGOG00000007384)	gmppaa (ENSCGOG00000007399)	ENSCGOG00000007919	asic4a (ENSCGOG00000007921)	CHPF (ENSCGOG00000007924)	pdxka (ENSCGOG00000007930) #19	agpat3 (ENSCGOG00000007961) #22	ENSCGOG00000008087	ENSCGOG00000008089	ENSCGOG00000008094	ENSCGOG00000008098	ENSCGOG00000008109	ENSCGOG00000008111	ENSCGOG00000008116	fzd7b (ENSCGOG00000008130)	ALS2 (ENSCGOG00000008155)	SERP2 (ENSCGOG00000008626)	ENSCGOG00000008635	gtf2f2b (ENSCGOG00000008637)	kctd4 (ENSCGOG00000008640)	tpt1 (ENSCGOG00000008641)	RANBP2 (ENSCGOG00000008649)
Eupecaria_C	ANCESTRAL SPECIES	24	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183023.A.e.b	ENSGT00950000183048.b.b.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00390000016051.b	ENSGT00940000159552	ENSGT00390000006051
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	24	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183023.A.e.b	ENSGT00950000183048.b.b.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00390000016051.b	ENSGT00940000159552	ENSGT00390000006051
European seabass	MODERN SPECIES	5	NXPH2 (ENSDLAG00005033631)	SPOPL (ENSDLAG00005021423)	HNMT (ENSDLAG00005021434)	hnmt (ENSDLAG00005021444)	THSD7B (ENSDLAG00005021466)	cxcr4b (ENSDLAG00005021633)	dars1 (ENSDLAG00005021661)	ENSDLAG00005022205	ENSDLAG00005022211	gmppaa (ENSDLAG00005022243)	ENSDLAG00005000106	ENSDLAG00005030066	asic4a (ENSDLAG00005029969)	CHPF (ENSDLAG00005029792)	ENSDLAG00005000192 #19	ENSDLAG00005029921 #22	ENSDLAG00005000277	ENSDLAG00005033483	ENSDLAG00005000287	ENSDLAG00005000284	ENSDLAG00005031702	ENSDLAG00005028228	ENSDLAG00005000290	ENSDLAG00005000293	ENSDLAG00005002446	ENSDLAG00005010357	ENSDLAG00005034493	ENSDLAG00005002629	ENSDLAG00005030806	ENSDLAG00005032391	ENSDLAG00005003525
Large yellow croaker	MODERN SPECIES	490	ENSLCRG00005022215	NXPH2 (ENSLCRG00005009855)	spoplb (ENSLCRG00005009857)	HNMT (ENSLCRG00005009863)	hnmt (ENSLCRG00005009865)	THSD7B (ENSLCRG00005009885)	cxcr4a (ENSLCRG00005009998)	dars1 (ENSLCRG00005010015)	TMBIM1 (ENSLCRG00005011247)	pnkd (ENSLCRG00005011249)	gmppaa (ENSLCRG00005011259)	ENSLCRG00005012243	asic4a (ENSLCRG00005012245)	CHPF (ENSLCRG00005012247)	pdxka (ENSLCRG00005012248) #19	agpat3 (ENSLCRG00005012251) #22	ENSLCRG00005012257	ENSLCRG00005012258	ENSLCRG00005012259	ENSLCRG00005012260	ENSLCRG00005012261	ENSLCRG00005012262	ENSLCRG00005012264	ENSLCRG00005012272	ENSLCRG00005012274	ENSLCRG00005012276	ENSLCRG00005012277	ENSLCRG00005012278	ENSLCRG00005012280	ENSLCRG00005012282	ENSLCRG00005012283
Gilthead seabream	MODERN SPECIES	23	rabl3 (ENSSAUG00010021878)	gzm3.4 (ENSSAUG00010021873)	ugt1b1 (ENSSAUG00010021869)	NXPH2 (ENSSAUG00010021866)	spoplb (ENSSAUG00010021860)	ENSSAUG00010021855	THSD7B (ENSSAUG00010021619)	cxcr4a (ENSSAUG00010021600)	dars1 (ENSSAUG00010020665)	TMBIM1 (ENSSAUG00010020647)	pnkd (ENSSAUG00010020576)	gmppaa (ENSSAUG00010020571)	asic4a (ENSSAUG00010020558)	CHPF (ENSSAUG00010020555)	pdxka (ENSSAUG00010020537) #19	agpat3 (ENSSAUG00010020534) #22	ENSSAUG00010020533	ENSSAUG00010020531	ENSSAUG00010020529	ENSSAUG00010020528	ENSSAUG00010020526	ENSSAUG00010020524	ENSSAUG00010020522	ENSSAUG00010020521	ENSSAUG00010020520	ENSSAUG00010020519	ENSSAUG00010020518	ENSSAUG00010020517	ENSSAUG00010020516	ENSSAUG00010020515	ENSSAUG00010020514
Pinecone sodierfish	DUPLICATION
Pinecone sodierfish	MODERN SPECIES	13	NXPH2 (ENSMMDG00005016244)	spoplb (ENSMMDG00005016248)	HNMT (ENSMMDG00005016258)	hnmt (ENSMMDG00005016260)	THSD7B (ENSMMDG00005016269)	cxcr4a (ENSMMDG00005016278)	dars1 (ENSMMDG00005016293)	TMBIM1 (ENSMMDG00005017168)	pnkd (ENSMMDG00005017180)	gmppaa (ENSMMDG00005017215)	ENSMMDG00005017226	ENSMMDG00005017228	asic4a (ENSMMDG00005017231)	CHPF (ENSMMDG00005017236)	pdxka (ENSMMDG00005017253) #19	agpat3 (ENSMMDG00005017290) #22	ENSMMDG00005017292	ahr1b (ENSMMDG00005017321)	ahr2 (ENSMMDG00005018165)	ndufa10 (ENSMMDG00005019758)	gypc (ENSMMDG00005019761)	ENSMMDG00005019811	CNTNAP5 (ENSMMDG00005020987)	ENSMMDG00005021013	sh3bp4 (ENSMMDG00005021015)	arl4cb (ENSMMDG00005021019)	nepro (ENSMMDG00005021027)	ENSMMDG00005021029	ENSMMDG00005021030	ENSMMDG00005021033	ENSMMDG00005021036
Pinecone sodierfish	MODERN SPECIES	6	crls1 (ENSMMDG00005024634)	ENSMMDG00005024635	ENSMMDG00005024636	napba (ENSMMDG00005006966)	cdc5l (ENSMMDG00005006968)	supt3h (ENSMMDG00005006972)	ENSMMDG00005006975	ENSMMDG00005006983	gja5b (ENSMMDG00005007346)	cbr1 (ENSMMDG00005007348)	setd4 (ENSMMDG00005007350)	cryzl1 (ENSMMDG00005007352)	ITSN1 (ENSMMDG00005007355)	ENSMMDG00005007367	pdxkb (ENSMMDG00005007368) #19	agpat3 (ENSMMDG00005007369) #22	ENSMMDG00005007398	ENSMMDG00005007399	ppp1r1c (ENSMMDG00005007400)	nckap1 (ENSMMDG00005007441)	dusp19b (ENSMMDG00005008799)	zc3h15 (ENSMMDG00005008803)	rbm45 (ENSMMDG00005008809)	ENSMMDG00005008822	ENSMMDG00005008825	ENSMMDG00005008828	ENSMMDG00005008831	ENSMMDG00005008833	ENSMMDG00005008836	GFRA1 (ENSMMDG00005008840)	ENSMMDG00005008858
Protacanthopterygii	ANCESTRAL SPECIES	138											ENSGT00510000046499.r.a	ENSGT00940000153577.A	ENSGT00390000013113	ENSGT00940000157065	ENSGT00390000003874.a.b #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000159094.e	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00940000175880	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00940000178309	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000154394.b.a.b	ENSGT00940000164110	ENSGT00950000183019.f.b.b.d	ENSGT00390000000862
Northern pike	DUPLICATION
Northern pike	MODERN SPECIES	15	MBNL2 (ENSELUG00000003280)	ENSELUG00000003299	HS6ST3 (ENSELUG00000003304)	UGGT2 (ENSELUG00000003443)	dnajc3a (ENSELUG00000003522)	CLDN10 (ENSELUG00000003547)	ENSELUG00000003558	cldn10b (ENSELUG00000003571)	ABCC4 (ENSELUG00000003606)	sox21b (ENSELUG00000003620)	dct (ENSELUG00000003628)	gpc6b (ENSELUG00000003679)	TMPRSS3 (ENSELUG00000003710)	ENSELUG00000028423	pdxka (ENSELUG00000003730) #19	agpat3 (ENSELUG00000003749) #22	ENSELUG00000003796	ndufa10 (ENSELUG00000003853)	CNTNAP5 (ENSELUG00000003908)	ENSELUG00000004224	ENSELUG00000004356	sh3bp4 (ENSELUG00000004382)	ARL4C (ENSELUG00000004400)	ADPRH (ENSELUG00000004422)	arhgap15 (ENSELUG00000004474)	gtdc1 (ENSELUG00000004515)	ENSELUG00000027327	zeb2a (ENSELUG00000004545)	acvr2aa (ENSELUG00000004570)	MBD5 (ENSELUG00000004605)	epc2 (ENSELUG00000004633)
Northern pike	MODERN SPECIES	21	ENSELUG00000025932	ENSELUG00000025714	lrrc58a (ENSELUG00000020505)	fstl1a (ENSELUG00000020537)	gja8b (ENSELUG00000020543)	gja5b (ENSELUG00000020556)	bcl9 (ENSELUG00000020591)	cbr1 (ENSELUG00000020616)	setd4 (ENSELUG00000020643)	cryzl1 (ENSELUG00000020661)	ITSN1 (ENSELUG00000020734)	ENSELUG00000020797	ENSELUG00000000914 #10	TMPRSS3 (ENSELUG00000020975)	pdxkb (ENSELUG00000021033) #19	agpat3 (ENSELUG00000021072) #22	PTH2R (ENSELUG00000021121)	mgat5 (ENSELUG00000021168)	TMEM163 (ENSELUG00000021194)	nxpe3 (ENSELUG00000021253)	nxpe3 (ENSELUG00000021312)	cpb2 (ENSELUG00000021373)	alg11 (ENSELUG00000021401)	spp2 (ENSELUG00000029627)	raph1b (ENSELUG00000021497)	ENSELUG00000021563	ENSELUG00000021582	mdh1b (ENSELUG00000021611)	ENSELUG00000021633	retreg2 (ENSELUG00000021648)	ENSELUG00000021709
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	7	ENSGT00950000182897.B.a.b.b.a.a	ENSGT01030000234621.F.d	ENSGT00950000183071.a.a.a.e.a.b	ENSGT00390000004600.b.b	ENSGT00940000165805	ENSGT00940000155232.t.a.b.a.l	ENSGT00940000166809	ENSGT00940000155232.t.b.b.d.b	ENSGT00940000153931.b.a	ENSGT00940000162795.e	ENSGT00940000156856.d	ENSGT01050000244897.a.b.b.a.a.f	ENSGT00940000158589.b.a	ENSGT00940000158449.f	ENSGT00390000003874.a.a.b #19	ENSGT00950000182836.b.b.b.a.k.a #22	ENSGT01090000259985.b.a.a.a	ENSGT00940000162556.A.b	ENSGT00940000154486.b.b.a.b.b	ENSGT00940000154486.b.a.a.b.e.a.a.a.d	ENSGT00390000016151.g	ENSGT00940000160532.h.c.a	ENSGT00940000160532.h.c.b	ENSGT00390000013151.a.a.b.c	ENSGT00940000160639.b.a.b.b.b.a	ENSGT00950000182860.a.b.b.c	ENSGT00390000006631	ENSGT00950000183208.A.c.b.e	ENSGT00940000157233.d.g	ENSGT00530000064137.a.b.u.a	ENSGT00940000158526.s
Salmoninae_a	ANCESTRAL SPECIES		ENSGT00950000182897.B.a.b.b.a.a	ENSGT01030000234621.F.d	ENSGT00950000183071.a.a.a.e.a.b	ENSGT00390000004600.b.b	ENSGT00940000165805	ENSGT00940000155232.t.a.b.a.l	ENSGT00940000166809	ENSGT00940000155232.t.b.b.d.b	ENSGT00940000153931.b.a	ENSGT00940000162795.e	ENSGT00940000156856.d	ENSGT01050000244897.a.b.b.a.a.f	ENSGT00940000158589.b.a	ENSGT00940000158449.f	ENSGT00390000003874.a.a.b #19	ENSGT00950000182836.b.b.b.a.k.a #22	ENSGT01090000259985.b.a.a.a	ENSGT00940000162556.A.b	ENSGT00940000154486.b.b.a.b.b	ENSGT00940000154486.b.a.a.b.e.a.a.a.d	ENSGT00390000016151.g	ENSGT00940000160532.h.c.a	ENSGT00940000160532.h.c.b	ENSGT00390000013151.a.a.b.c	ENSGT00940000160639.b.a.b.b.b.a	ENSGT00950000182860.a.b.b.c	ENSGT00390000006631	ENSGT00950000183208.A.c.b.e	ENSGT00940000157233.d.g	ENSGT00530000064137.a.b.u.a	ENSGT00940000158526.s
Salmo	ANCESTRAL SPECIES	15	ENSGT00950000182897.B.a.b.b.a.a	ENSGT01030000234621.F.d	ENSGT00950000183071.a.a.a.e.a.b	ENSGT00390000004600.b.b	ENSGT00940000165805	ENSGT00940000155232.t.a.b.a.l	ENSGT00940000166809	ENSGT00940000155232.t.b.b.d.b	ENSGT00940000153931.b.a	ENSGT00940000162795.e	ENSGT00940000156856.d	ENSGT01050000244897.a.b.b.a.a.f	ENSGT00940000158589.b.a	ENSGT00940000158449.f	ENSGT00390000003874.a.a.b #19	ENSGT00950000182836.b.b.b.a.k.a #22	ENSGT01090000259985.b.a.a.a.i	ENSGT00940000162556.A.b	ENSGT00940000154486.b.b.a.b.b	ENSGT00940000154486.b.a.a.b.e.a.a.a.d	ENSGT00390000016151.g	ENSGT00940000160532.h.c.a	ENSGT00940000160532.h.c.b	ENSGT00390000013151.a.a.b.c	ENSGT00940000160639.b.a.b.b.b.a	ENSGT00950000182860.a.b.b.c	ENSGT00390000006631	ENSGT00950000183208.A.c.b.e	ENSGT00940000157233.d.g	ENSGT00530000064137.a.b.u.a	ENSGT00940000158526.s
River trout	MODERN SPECIES	16	OXGR1 (ENSSTUG00000050110)	HS6ST3 (ENSSTUG00000050111)	UGGT2 (ENSSTUG00000050158)	dnajc3a (ENSSTUG00000050699)	CLDN10 (ENSSTUG00000050746)	ENSSTUG00000050748	cldn10b (ENSSTUG00000050750)	ABCC4 (ENSSTUG00000050790)	sox21b (ENSSTUG00000050812)	dct (ENSSTUG00000050816)	gpc6b (ENSSTUG00000050825)	ENSSTUG00000050829	TMPRSS3 (ENSSTUG00000050830)	ENSSTUG00000050834	pdxka (ENSSTUG00000050837) #19	agpat3 (ENSSTUG00000050854) #22	ENSSTUG00000050856	ENSSTUG00000050857	ENSSTUG00000050858	ENSSTUG00000050861	ENSSTUG00000050863	ENSSTUG00000050869	ENSSTUG00000050919	ndufa10 (ENSSTUG00000050924)	ENSSTUG00000050934	ENSSTUG00000003287	sh3bp4 (ENSSTUG00000006143)	ARL4C (ENSSTUG00000006163)	ADPRH (ENSSTUG00000006167)	arhgap15 (ENSSTUG00000006192)	gtdc1 (ENSSTUG00000006293)
Atlantic salmon	MODERN SPECIES	17	MBNL2 (ENSSSAG00000081035)	OXGR1 (ENSSSAG00000081068)	HS6ST3 (ENSSSAG00000122059)	UGGT2 (ENSSSAG00000081076)	dnajc3a (ENSSSAG00000081124)	CLDN10 (ENSSSAG00000081129)	ENSSSAG00000097966	cldn10b (ENSSSAG00000081133)	ABCC4 (ENSSSAG00000081257)	sox21b (ENSSSAG00000090605)	ENSSSAG00000081457	gpc6b (ENSSSAG00000068375)	ENSSSAG00000081471	ENSSSAG00000081472	pdxka (ENSSSAG00000086835) #19	ENSSSAG00000081475 #22	ENSSSAG00000095490	ENSSSAG00000081478	ENSSSAG00000081480	ENSSSAG00000081479	ENSSSAG00000081481	ENSSSAG00000081482	ENSSSAG00000081485	ndufa10 (ENSSSAG00000081486)	ENSSSAG00000081497	ENSSSAG00000081555	ENSSSAG00000069294	sh3bp4 (ENSSSAG00000081600)	ENSSSAG00000109819	ENSSSAG00000102975	adprh (ENSSSAG00000081606)
Oncorhynchus	ANCESTRAL SPECIES	3	ENSGT00950000182897.B.a.b.b.a.a	ENSGT01030000234621.F.d	ENSGT00950000183071.a.a.a.e.a.b	ENSGT00390000004600.b.b	ENSGT00940000165805	ENSGT00940000155232.t.a.b.a.l	ENSGT00940000166809	ENSGT00940000155232.t.b.b.d.b	ENSGT00940000153931.b.a	ENSGT00940000162795.e	ENSGT00940000156856.d	ENSGT01050000244897.a.b.b.a.a.f	ENSGT00940000158589.b.a	ENSGT00940000158449.f	ENSGT00390000003874.a.a.b #19	ENSGT00950000182836.b.b.b.a.k.a #22	ENSGT01090000259985.b.a.a.a	ENSGT00940000162556.A.b	ENSGT00940000154486.b.b.a.b.b	ENSGT00940000154486.b.a.a.b.e.a.a.a.d	ENSGT00390000016151.g	ENSGT00940000160532.h.c.a	ENSGT00940000160532.h.c.b	ENSGT00390000013151.a.a.b.c	ENSGT00940000160639.b.a.b.b.b.a	ENSGT00950000182860.a.b.b.c	ENSGT00390000006631	ENSGT00950000183208.A.c.b.e	ENSGT00940000157233.d.g	ENSGT00530000064137.a.b.u.a	ENSGT00940000158526.s
Oncorhynchus_a	ANCESTRAL SPECIES	8	ENSGT00950000182897.B.a.b.b.a.a	ENSGT01030000234621.F.d	ENSGT00950000183071.a.a.a.e.a.b	ENSGT00390000004600.b.b	ENSGT00940000165805	ENSGT00940000155232.t.a.b.a.l	ENSGT00940000166809	ENSGT00940000155232.t.b.b.d.b	ENSGT00940000153931.b.a	ENSGT00940000162795.e	ENSGT00940000156856.d	ENSGT01050000244897.a.b.b.a.a.f	ENSGT00940000158589.b.a	ENSGT00940000158449.f	ENSGT00390000003874.a.a.b #19	ENSGT00950000182836.b.b.b.a.k.a #22	ENSGT01090000259985.b.a.a.a.h	ENSGT01090000259985.b.a.a.a.g	ENSGT00940000162556.A.b	ENSGT00940000154486.b.b.a.b.b	ENSGT00940000154486.b.a.a.b.e.a.a.a.d	ENSGT00390000016151.g	ENSGT00940000160532.h.c.a	ENSGT00940000160532.h.c.b	ENSGT00390000013151.a.a.b.c	ENSGT00940000160639.b.a.b.b.b.a	ENSGT00950000182860.a.b.b.c	ENSGT00390000006631	ENSGT00950000183208.A.c.b.e	ENSGT00940000157233.d.g	ENSGT00530000064137.a.b.u.a
Coho salmon	MODERN SPECIES	11	RAP2A (ENSOKIG00005031425)	MBNL2 (ENSOKIG00005031458)	OXGR1 (ENSOKIG00005031560)	HS6ST3 (ENSOKIG00005031565)	UGGT2 (ENSOKIG00005031772)	dnajc3a (ENSOKIG00005036383)	ENSOKIG00005036780	cldn10b (ENSOKIG00005036788)	ABCC4 (ENSOKIG00005036926)	sox21b (ENSOKIG00005039048)	DCT (ENSOKIG00005039083)	gpc6b (ENSOKIG00005039314)	TMPRSS3 (ENSOKIG00005039458)	ENSOKIG00005039511	pdxka (ENSOKIG00005039540) #19	agpat3 (ENSOKIG00005040043) #22	ENSOKIG00005040088	ENSOKIG00005040287	ENSOKIG00005040348	ENSOKIG00005040376	ENSOKIG00005040875	ndufa10 (ENSOKIG00005041173)	ENSOKIG00005041362	ENSOKIG00005043752	sh3bp4 (ENSOKIG00005046356)	ENSOKIG00005046369	ARL4C (ENSOKIG00005046372)	ADPRH (ENSOKIG00005046379)	arhgap15 (ENSOKIG00005046394)	gtdc1 (ENSOKIG00005046420)	zeb2a (ENSOKIG00005046434)
Chinook salmon	MODERN SPECIES	22	RAP2A (ENSOTSG00005019336)	MBNL2 (ENSOTSG00005019337)	OXGR1 (ENSOTSG00005019338)	HS6ST3 (ENSOTSG00005019339)	UGGT2 (ENSOTSG00005019373)	dnajc3a (ENSOTSG00005026434)	CLDN10 (ENSOTSG00005026435)	ENSOTSG00005026436	cldn10b (ENSOTSG00005026438)	ABCC4 (ENSOTSG00005026446)	sox21b (ENSOTSG00005026763)	dct (ENSOTSG00005026771)	gpc6b (ENSOTSG00005026775)	TMPRSS3 (ENSOTSG00005026778)	pdxka (ENSOTSG00005026779) #19	agpat3 (ENSOTSG00005026782) #22	ENSOTSG00005026783	ENSOTSG00005026784	ENSOTSG00005026785	ENSOTSG00005026786	ENSOTSG00005026787	ENSOTSG00005026789	ndufa10 (ENSOTSG00005026790)	ENSOTSG00005001354	ENSOTSG00005009276	sh3bp4 (ENSOTSG00005010245)	ARL4C (ENSOTSG00005010246)	ADPRH (ENSOTSG00005010248)	arhgap15 (ENSOTSG00005010259)	gtdc1 (ENSOTSG00005010262)	zeb2a (ENSOTSG00005010263)
Rainbow trout	MODERN SPECIES	21	ENSOMYG00000069937	OXGR1 (ENSOMYG00000050579)	HS6ST3 (ENSOMYG00000041768)	UGGT2 (ENSOMYG00000041825)	dnajc3a (ENSOMYG00000042251)	CLDN10 (ENSOMYG00000042315)	ENSOMYG00000042320	cldn10b (ENSOMYG00000042324)	ABCC4 (ENSOMYG00000042353)	sox21b (ENSOMYG00000042388)	ENSOMYG00000042409	gpc6b (ENSOMYG00000042511)	ENSOMYG00000042544	ENSOMYG00000054604	pdxka (ENSOMYG00000042566) #19	ENSOMYG00000042728 #22	ENSOMYG00000053300	il1rl1 (ENSOMYG00000042755)	ENSOMYG00000042829	ENSOMYG00000068390	ENSOMYG00000042842	ENSOMYG00000060709	ENSOMYG00000000270	ndufa10 (ENSOMYG00000000339)	ENSOMYG00000000840	ENSOMYG00000002718	sh3bp4 (ENSOMYG00000004214)	ENSOMYG00000004236	ENSOMYG00000073609	ENSOMYG00000062109	ENSOMYG00000004346
Huchen	MODERN SPECIES	7	OXGR1 (ENSHHUG00000036614)	HS6ST3 (ENSHHUG00000036615)	UGGT2 (ENSHHUG00000036620)	dnajc3a (ENSHHUG00000036759)	ENSHHUG00000036780	ENSHHUG00000036783	CLDN10 (ENSHHUG00000036788)	ABCC4 (ENSHHUG00000036809)	sox21b (ENSHHUG00000037012)	dct (ENSHHUG00000037016)	gpc6b (ENSHHUG00000037034)	ENSHHUG00000037074	ENSHHUG00000015925	ENSHHUG00000015926	pdxka (ENSHHUG00000015929) #19	agpat3 (ENSHHUG00000016045) #22	ENSHHUG00000016068
Salmoninae	ANCESTRAL SPECIES	740													ENSGT00940000156856.c.b	ENSGT01050000244897.a.b.b.a.a.e	ENSGT00390000003874.a.a.a #19	ENSGT00950000182836.b.b.b.a.k.b #22	ENSGT01100000263531.G.n	ENSGT00940000154486.b.b.a.b.a	ENSGT00940000154486.b.a.a.b.e.a.a.a.c	ENSGT00390000016151.h	ENSGT00510000049102.c	ENSGT00940000160532.h.d.a	ENSGT00950000182977.B.b.b.d
Salmoninae_a	ANCESTRAL SPECIES		ENSGT00940000157974.c	ENSGT00940000153476.b.o.a.b	ENSGT00940000155972.B.cb	ENSGT00940000155318.b.a.b.d	ENSGT01050000244823.d.a.b.a.a.b.a.b.a.b.b.a.b	ENSGT00940000160594.h	ENSGT00950000182897.B.a.b.b.a.b	ENSGT00990000211313	ENSGT00950000183071.a.a.a.e.a.a	ENSGT00940000155232.t.a.b.a.k	ENSGT00940000155232.t.b.b.d.a	ENSGT00940000162795.f	ENSGT00940000156856.c.b	ENSGT01050000244897.a.b.b.a.a.e	ENSGT00390000003874.a.a.a #19	ENSGT00950000182836.b.b.b.a.k.b #22	ENSGT01100000263531.G.n	ENSGT00940000154486.b.b.a.b.a	ENSGT00940000154486.b.a.a.b.e.a.a.a.c	ENSGT00390000016151.h	ENSGT00510000049102.c	ENSGT00940000160532.h.d.a	ENSGT00950000182977.B.b.b.d	ENSGT00940000160532.h.d.b	ENSGT00530000065251.m.a	ENSGT00390000013151.a.a.b.d	ENSGT00940000160639.b.a.b.b.b.b	ENSGT00940000166921.a	ENSGT00950000182860.a.b.b.d	ENSGT00950000183208.A.c.b.f	ENSGT00940000157233.d.h
Oncorhynchus	ANCESTRAL SPECIES	13	ENSGT00940000153476.b.o.a.b	ENSGT00940000155972.B.cb	ENSGT00940000155318.b.a.b.d	ENSGT01050000244823.d.a.b.a.a.b.a.b.a.b.b.a.b	ENSGT01050000244823.d.a.b.a.a.b.a.b.a.a.b.b.a	ENSGT00940000160594.g.a.b	ENSGT00950000182897.B.a.b.b.a.b	ENSGT00990000211313	ENSGT00950000183071.a.a.a.e.a.a	ENSGT00940000155232.t.a.b.a.k	ENSGT00940000155232.t.b.b.d.a	ENSGT00940000162795.f	ENSGT00940000156856.c.b	ENSGT01050000244897.a.b.b.a.a.e	ENSGT00390000003874.a.a.a #19	ENSGT00950000182836.b.b.b.a.k.b #22	ENSGT01100000263531.G.n	ENSGT00940000154486.b.b.a.b.a	ENSGT00940000154486.b.a.a.b.e.a.a.a.c	ENSGT00940000153510.a.a.b	ENSGT00390000016151.h	ENSGT00510000049102.c	ENSGT00940000160532.h.d.a	ENSGT00950000182977.B.b.b.d	ENSGT00940000160532.h.d.b	ENSGT00530000065251.m.a	ENSGT00390000013151.a.a.b.d	ENSGT00940000160639.b.a.b.b.b.b.d	ENSGT00940000160639.b.a.b.b.b.b.c	ENSGT00940000166921.a	ENSGT00950000182860.a.b.b.d
Rainbow trout	MODERN SPECIES	14	ENSOMYG00000050388	ENSOMYG00000062273	ENSOMYG00000061875	ENSOMYG00000069828	ENSOMYG00000023969	RAP2A (ENSOMYG00000019238)	MBNL2 (ENSOMYG00000019148)	ENSOMYG00000019064	HS6ST3 (ENSOMYG00000019059)	ENSOMYG00000019043	ENSOMYG00000019029	sox21b (ENSOMYG00000019015)	ENSOMYG00000018120	gpc6b (ENSOMYG00000018074)	ENSOMYG00000017742 #19	ENSOMYG00000017677 #22	ENSOMYG00000017645	ENSOMYG00000017622	ENSOMYG00000017579	ENSOMYG00000049274	ENSOMYG00000017512	ENSOMYG00000069429	ENSOMYG00000027150	ENSOMYG00000051381	ENSOMYG00000069785	ENSOMYG00000026237	ENSOMYG00000026010	ENSOMYG00000026003	ENSOMYG00000025984	ENSOMYG00000025966	ENSOMYG00000068371
Oncorhynchus_a	ANCESTRAL SPECIES	11	ENSGT00940000153476.b.o.a.b	ENSGT00940000155972.B.cb	ENSGT00940000155318.b.a.b.d	ENSGT01050000244823.d.a.b.a.a.b.a.b.a.b.b.a.b	ENSGT01050000244823.d.a.b.a.a.b.a.b.a.a.b.b.a	ENSGT00940000160594.g.a.b	ENSGT00950000182897.B.a.b.b.a.b	ENSGT00990000211313	ENSGT00950000183071.a.a.a.e.a.a	ENSGT00940000155232.t.a.b.a.k	ENSGT00940000155232.t.b.b.d.a	ENSGT00940000162795.f	ENSGT00940000156856.c.b	ENSGT01050000244897.a.b.b.a.a.e	ENSGT00390000003874.a.a.a #19	ENSGT00950000182836.b.b.b.a.k.b #22	ENSGT01100000263531.G.n	ENSGT01040000241782.a	ENSGT00940000154486.b.b.a.b.a	ENSGT00940000154486.b.a.a.b.e.a.a.a.c	ENSGT00940000153510.a.a.b	ENSGT00390000016151.h	ENSGT00510000049102.c	ENSGT00940000160532.h.d.a	ENSGT00950000182977.B.b.b.d	ENSGT00940000160532.h.d.b	ENSGT00530000065251.m.a	ENSGT00940000153773.a.b	ENSGT00940000154486.b.b.b.a.b	ENSGT00940000155311.B	ENSGT00530000063599.B.m.a.a
Coho salmon	MODERN SPECIES	18	ENSOKIG00005010112	ENSOKIG00005010108	ENSOKIG00005010095	RAP2A (ENSOKIG00005010089)	MBNL2 (ENSOKIG00005010014)	ENSOKIG00005009981	HS6ST3 (ENSOKIG00005009972)	ENSOKIG00005009947	CLDN10 (ENSOKIG00005009930)	sox21b (ENSOKIG00005009917)	DCT (ENSOKIG00005009906)	dct (ENSOKIG00005009740)	gpc6b (ENSOKIG00005009702)	PDXK (ENSOKIG00005009663) #19	ENSOKIG00005009653	AGPAT3 (ENSOKIG00005009634) #22	ENSOKIG00005009595	ENSOKIG00005009583	ENSOKIG00005009542	ENSOKIG00005009470	ENSOKIG00005009445	NDUFA10 (ENSOKIG00005009422)	ENSOKIG00005009405	gypc (ENSOKIG00005009358)	CNTNAP5 (ENSOKIG00005009128)	ENSOKIG00005009095	ENSOKIG00005009080	CNTNAP5 (ENSOKIG00005006419)	ENSOKIG00005006239	ENSOKIG00005006226	SH3BP4 (ENSOKIG00005029441)
Chinook salmon	MODERN SPECIES	66	pou5f3 (ENSOTSG00005031753)	fut7 (ENSOTSG00005031752)	clic3 (ENSOTSG00005031739)	ENSOTSG00005031736	pdhb (ENSOTSG00005031734)	kctd6a (ENSOTSG00005031730)	ccdc71 (ENSOTSG00005031727)	stab1 (ENSOTSG00005031725)	ENSOTSG00005031721	cldn10b (ENSOTSG00005031716)	sox21b (ENSOTSG00005031714)	dct (ENSOTSG00005031712)	gpc6b (ENSOTSG00005031710)	gpc6b (ENSOTSG00005031709)	PDXK (ENSOTSG00005031708) #19	agpat3 (ENSOTSG00005031707) #22	ENSOTSG00005031704	ENSOTSG00005031703	ENSOTSG00005031565	ENSOTSG00005031555	ndufa10 (ENSOTSG00005031366)	gypc (ENSOTSG00005031364)
Salmo	ANCESTRAL SPECIES	10	ENSGT00940000155972.B.cb	ENSGT00940000155318.b.a.b.d	ENSGT01050000244823.d.a.b.a.a.b.a.b.a.b.b.a.b	ENSGT01050000244823.d.a.b.a.a.b.b.b	ENSGT01050000244823.d.a.b.a.a.a.b	ENSGT00940000160594.h	ENSGT00950000182897.B.a.b.b.a.b	ENSGT00990000211313	ENSGT00950000183071.a.a.a.e.a.a	ENSGT00940000155232.t.a.b.a.k	ENSGT00940000155232.t.b.b.d.a	ENSGT00940000162795.f	ENSGT00940000156856.c.b	ENSGT01050000244897.a.b.b.a.a.e	ENSGT00390000003874.a.a.a #19	ENSGT00950000182836.b.b.b.a.k.b #22	ENSGT01100000263531.G.n	ENSGT00990000212594	ENSGT00940000154486.b.b.a.a	ENSGT00390000016151.h	ENSGT00940000160532.h.d.a	ENSGT00950000182977.B.b.b.d	ENSGT00940000160532.h.d.b	ENSGT00530000065251.m.a	ENSGT00390000013151.a.a.b.d	ENSGT00940000160639.b.a.b.b.b.b	ENSGT00940000166921.a	ENSGT00950000182860.a.b.b.d	ENSGT00950000183208.A.c.b.f	ENSGT00940000157233.d.h	ENSGT00530000064137.a.b.u.b
Atlantic salmon	MODERN SPECIES	13	ENSSSAG00000110345	ENSSSAG00000113440	ENSSSAG00000115040	ENSSSAG00000068508	RAP2A (ENSSSAG00000113659)	MBNL2 (ENSSSAG00000068491)	ENSSSAG00000068489	HS6ST3 (ENSSSAG00000081069)	CLD10 (ENSSSAG00000068476)	CLD10 (ENSSSAG00000068473)	sox21b (ENSSSAG00000119187)	ENSSSAG00000068460	gpc6b (ENSSSAG00000081467)	ENSSSAG00000096540	PDXK (ENSSSAG00000068272) #19	ENSSSAG00000099256 #22	ENSSSAG00000068245	ENSSSAG00000068236	ENSSSAG00000067965	ahr2a (ENSSSAG00000122051)	NDUAA (ENSSSAG00000067928)	ENSSSAG00000109411	ENSSSAG00000113592	ENSSSAG00000064864	clm8 (ENSSSAG00000064734)	ENSSSAG00000063572	ENSSSAG00000063519	ENSSSAG00000114515	ENSSSAG00000063499	ENSSSAG00000114450	ENSSSAG00000063341
River trout	MODERN SPECIES	12	ENSSTUG00000045431	ENSSTUG00000045436	ENSSTUG00000045448	ENSSTUG00000001982	RAP2A (ENSSTUG00000002344)	MBNL2 (ENSSTUG00000002540)	ENSSTUG00000002640	HS6ST3 (ENSSTUG00000002658)	ENSSTUG00000003159	ENSSTUG00000003334	cldn10b (ENSSTUG00000003552)	sox21b (ENSSTUG00000003562)	dct (ENSSTUG00000003619)	gpc6b (ENSSTUG00000003753)	PDXK (ENSSTUG00000003967) #19	agpat3 (ENSSTUG00000004078) #22	ENSSTUG00000004131	ENSSTUG00000004201	ENSSTUG00000004780	ndufa10 (ENSSTUG00000004793)	ENSSTUG00000004869	ENSSTUG00000005306	ENSSTUG00000005317	ENSSTUG00000005465	ENSSTUG00000007613	ENSSTUG00000007626	sh3bp4 (ENSSTUG00000007637)	ENSSTUG00000007651	ARL4C (ENSSTUG00000007658)	ENSSTUG00000007661	arhgap15 (ENSSTUG00000007723)
Huchen	MODERN SPECIES	3933																agpat3 (ENSHHUG00000047671) #22	ENSHHUG00000047687	ENSHHUG00000047778
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	640									ENSGT01050000244864.C.f.b	ENSGT00730000110915.b.c.b	ENSGT00390000013113.v	ENSGT00940000157065.z	ENSGT00940000159505.v.b #10	ENSGT00940000158589.b.b.d.b	ENSGT00390000003874.a.b.b #19	ENSGT00950000182836.b.b.b.a.l.a #22	ENSGT00940000159094.e.d	ENSGT00940000153470.a.a.a.a.c.b.a.a	ENSGT00390000001170.a.b.b	ENSGT00940000159160.g	ENSGT00550000075118.k.a	ENSGT00940000175880
Salmoninae_a	ANCESTRAL SPECIES	66	ENSGT00950000183208.A.c.a.o	ENSGT00940000157233.c.b	ENSGT00390000010372.o.a	ENSGT00390000003873.n.b #23	ENSGT00520000055635.c.a.a.b.e.b	ENSGT00940000156556.h.d	ENSGT00940000157784.c.d.f.a	ENSGT01050000244864.D.t.a	ENSGT01050000244864.C.f.b	ENSGT00730000110915.b.c.b	ENSGT00390000013113.v	ENSGT00940000157065.z	ENSGT00940000159505.v.b #10	ENSGT00940000158589.b.b.d.a.b	ENSGT00390000003874.a.b.b #19	ENSGT00950000182836.b.b.b.a.l.a #22	ENSGT00940000159094.e.d	ENSGT00940000153470.a.a.a.a.c.b.a.a	ENSGT00390000001170.a.b.b	ENSGT00940000159160.g	ENSGT00550000075118.k.a	ENSGT00940000175880	ENSGT00940000156552.c.b.j	ENSGT00940000178309.a.a.a	ENSGT00530000063410.b.i.b	ENSGT00940000154394.b.a.b.p.b	ENSGT00940000164110.f	ENSGT00950000183019.f.b.b.d.c.a	ENSGT00390000000862.h	ENSGT00940000156160.b.a.e.b.a	ENSGT00940000155270.i.b.d
Salmo	ANCESTRAL SPECIES	48	ENSGT00940000157233.c.b	ENSGT00390000010372.o.a.a	ENSGT00390000003873.n.b #23	ENSGT00390000010372.o.a.b	ENSGT00520000055635.c.a.a.a	ENSGT00940000156556.h.d	ENSGT00940000157784.c.d.f.a	ENSGT00940000157784.c.d.e	ENSGT01050000244864.D.t.a	ENSGT01050000244864.C.f.b	ENSGT00730000110915.b.c.b	ENSGT00390000013113.v	ENSGT00940000157065.y.a.b	ENSGT00940000159505.v.b #10	ENSGT00390000003874.a.b.b #19	ENSGT00950000182836.b.b.b.a.l.a #22	ENSGT00940000159094.e.d	ENSGT00940000153470.a.a.a.a.c.b.b	ENSGT00390000001170.a.b.b	ENSGT00940000159160.g	ENSGT00550000075118.k.a	ENSGT00940000175880	ENSGT00940000156552.c.b.j	ENSGT00940000178309.a.a.a	ENSGT00530000063410.b.i.b	ENSGT00940000154394.b.a.b.p.b	ENSGT00940000164110.f	ENSGT00950000183019.f.b.b.d.c.a	ENSGT00390000000862.h	ENSGT00940000156160.b.a.e.b.a	ENSGT00940000155270.i.b.d
River trout	MODERN SPECIES	36	ENSSTUG00000019153	TRAPPC10 (ENSSTUG00000018176) #23	ENSSTUG00000018115	gsk3ba (ENSSTUG00000018010)	lrrc58a (ENSSTUG00000017989)	fstl1a (ENSSTUG00000017559)	gja8b (ENSSTUG00000017529)	ENSSTUG00000017526	gja5b (ENSSTUG00000017522)	bcl9 (ENSSTUG00000017500)	cryzl1 (ENSSTUG00000017394)	ITSN1 (ENSSTUG00000015611)	ENSSTUG00000015341 #10	ENSSTUG00000015335	pdxkb (ENSSTUG00000015202) #19	agpat3 (ENSSTUG00000015126) #22	PTH2R (ENSSTUG00000014994)	mgat5 (ENSSTUG00000014911)	TMEM163 (ENSSTUG00000014881)	ENSSTUG00000014878	cpb2 (ENSSTUG00000014857)	alg11 (ENSSTUG00000014844)	raph1b (ENSSTUG00000013989)	ENSSTUG00000013913	mdh1b (ENSSTUG00000013892)	ENSSTUG00000013869	retreg2 (ENSSTUG00000013855)	ENSSTUG00000013834	cnppd1 (ENSSTUG00000013824)	abcb6a (ENSSTUG00000013395)	nrp2a (ENSSTUG00000013297)
Atlantic salmon	MODERN SPECIES	7	ENSSSAG00000119084	ENSSSAG00000111645	ENSSSAG00000007805 #23	ENSSSAG00000089311	GSK3B (ENSSSAG00000095698)	lrrc58a (ENSSSAG00000042935)	fstl1a (ENSSSAG00000042764)	gja8b (ENSSSAG00000101148)	gja5b (ENSSSAG00000042741)	bcl9 (ENSSSAG00000042658)	cryzl1 (ENSSSAG00000042514)	ENSSSAG00000009516	ENSSSAG00000009270	pknx1 (ENSSSAG00000009247) #10	ENSSSAG00000007894 #19	PLCC (ENSSSAG00000007841) #22	ENSSSAG00000007806	ENSSSAG00000007767	ENSSSAG00000086044	cpb2 (ENSSSAG00000104799)	alg11 (ENSSSAG00000007741)	ENSSSAG00000007736	ENSSSAG00000087440	ENSSSAG00000007675	ENSSSAG00000007664	mdh1b (ENSSSAG00000007657)	ENSSSAG00000086381	retreg2 (ENSSSAG00000007641)	ENSSSAG00000007632	abcb6a (ENSSSAG00000082548)	ENSSSAG00000101271
Oncorhynchus	ANCESTRAL SPECIES	43	ENSGT00950000183208.A.c.a.o	ENSGT00940000157233.c.b	ENSGT00390000010372.o.a	ENSGT00390000003873.n.b #23	ENSGT00520000055635.c.a.a.b.e.b	ENSGT00940000156556.h.d	ENSGT00940000157784.c.d.f.a	ENSGT01050000244864.D.t.a	ENSGT01050000244864.C.f.b	ENSGT00730000110915.b.c.b	ENSGT00390000013113.v	ENSGT00940000157065.z	ENSGT00940000159505.v.b #10	ENSGT00940000158589.b.b.d.a.b	ENSGT00390000003874.a.b.b #19	ENSGT00950000182836.b.b.b.a.l.a #22	ENSGT00940000159094.e.d	ENSGT00940000153470.a.a.a.a.c.b.a.a	ENSGT00390000001170.a.b.b	ENSGT00940000159160.g	ENSGT00550000075118.k.a	ENSGT00940000175880	ENSGT00940000156552.c.b.j	ENSGT00940000178309.a.a.a	ENSGT00940000160639.b.a.b.b.a.b	ENSGT00390000013151.a.a.a.d	ENSGT00940000161997.a.j	ENSGT00940000160532.g.h	ENSGT00940000154486.b.a.a.b.e.a.b.e	ENSGT00940000154486.b.b.b.a.b	ENSGT00940000155311.B
Oncorhynchus_a	ANCESTRAL SPECIES	6	ENSGT00950000183208.A.c.a.o	ENSGT00940000157233.c.b	ENSGT00390000010372.o.a	ENSGT00390000003873.n.b #23	ENSGT00520000055635.c.a.a.b.e.b	ENSGT00940000156556.h.d	ENSGT00940000157784.c.d.f.b	ENSGT01050000244864.D.t.a	ENSGT01050000244864.C.f.b	ENSGT00730000110915.b.c.b	ENSGT00390000013113.v	ENSGT00940000157065.z	ENSGT00940000159505.v.b #10	ENSGT00940000158589.b.b.d.a.b	ENSGT00390000003874.a.b.b #19	ENSGT00950000182836.b.b.b.a.l.a #22	ENSGT00940000159094.e.d	ENSGT00940000153470.a.a.a.a.c.b.a.a	ENSGT00390000001170.a.b.b	ENSGT00940000159160.g	ENSGT00550000075118.k.a	ENSGT00940000156552.c.b.j	ENSGT00940000178309.a.a.a	ENSGT00530000063410.b.i.b	ENSGT00940000154394.b.a.a.a.b.a.b.a	ENSGT00940000164110.f	ENSGT00950000183019.f.b.b.d.c.a	ENSGT00940000167257.h.b	ENSGT00940000156160.b.a.e.b.a	ENSGT00940000155270.i.b.d	ENSGT00950000183214.a.b.a.b.f.b.b.k
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	5	ENSOTSG00005043687	ENSOTSG00005043690	zgc:194242 (ENSOTSG00005044029)	TRAPPC10 (ENSOTSG00005044030) #23	gsk3ba (ENSOTSG00005044041)	lrrc58a (ENSOTSG00005044465)	fstl1a (ENSOTSG00005044471)	gja8b (ENSOTSG00005044496)	gja5b (ENSOTSG00005044497)	bcl9 (ENSOTSG00005044498)	cryzl1 (ENSOTSG00005044501)	ENSOTSG00005044504	ENSOTSG00005044707 #10	ENSOTSG00005044709	pdxkb (ENSOTSG00005044714) #19	agpat3 (ENSOTSG00005044788) #22	PTH2R (ENSOTSG00005044795)	mgat5 (ENSOTSG00005044799)	TMEM163 (ENSOTSG00005044801)	cpb2 (ENSOTSG00005044803)	alg11 (ENSOTSG00005044804)	raph1b (ENSOTSG00005044808)	ENSOTSG00005044810	mdh1b (ENSOTSG00005044811)	ENSOTSG00005044812	retreg2 (ENSOTSG00005044814)	ENSOTSG00005044813	cnppd1 (ENSOTSG00005044815)	abcb6a (ENSOTSG00005044825)	ENSOTSG00005045324	ENSOTSG00005045325
Chinook salmon	MODERN SPECIES	31	ENSOTSG00005024671	ENSOTSG00005023534	zgc:194242 (ENSOTSG00005023527)	TRAPPC10 (ENSOTSG00005023480) #23	gsk3ba (ENSOTSG00005022442)	lrrc58a (ENSOTSG00005022430)	fstl1a (ENSOTSG00005022427)	gja8b (ENSOTSG00005022423)	gja5b (ENSOTSG00005022422)	bcl9 (ENSOTSG00005022419)	cryzl1 (ENSOTSG00005022413)	ITSN1 (ENSOTSG00005022307)	ENSOTSG00005022306 #10	ENSOTSG00005022305	pdxkb (ENSOTSG00005022300) #19	agpat3 (ENSOTSG00005022299) #22	PTH2R (ENSOTSG00005022295)	mgat5 (ENSOTSG00005022269)	TMEM163 (ENSOTSG00005022264)	cpb2 (ENSOTSG00005022263)	alg11 (ENSOTSG00005022262)	raph1b (ENSOTSG00005022258)	ENSOTSG00005022257	ENSOTSG00005022256	retreg2 (ENSOTSG00005022254)	ENSOTSG00005022252	cnppd1 (ENSOTSG00005022249)	abcb6a (ENSOTSG00005021957)	abcb6a (ENSOTSG00005022200)	ENSOTSG00005021956	ENSOTSG00005021955
Coho salmon	MODERN SPECIES	7	ZEB2 (ENSOKIG00005034051)	ENSOKIG00005033422	ENSOKIG00005033373	TRAPPC10 (ENSOKIG00005032949) #23	GSK3B (ENSOKIG00005032382)	lrrc58a (ENSOKIG00005032318)	fstl1a (ENSOKIG00005032248)	gja8b (ENSOKIG00005032234)	gja5b (ENSOKIG00005032228)	bcl9 (ENSOKIG00005032136)	cryzl1 (ENSOKIG00005032013)	ITSN1 (ENSOKIG00005031417)	ENSOKIG00005031299	PKNOX1 (ENSOKIG00005031285) #10	pdxkb (ENSOKIG00005031043) #19	agpat3 (ENSOKIG00005030992) #22	PTH2R (ENSOKIG00005030757)	mgat5 (ENSOKIG00005030698)	TMEM163 (ENSOKIG00005030622)	alg11 (ENSOKIG00005030601)	raph1b (ENSOKIG00005029357)	ENSOKIG00005029256	mdh1b (ENSOKIG00005029217)	ENSOKIG00005029207	retreg2 (ENSOKIG00005029180)	cpb2 (ENSOKIG00005029166)	ENSOKIG00005029127	cnppd1 (ENSOKIG00005029096)	abcb6a (ENSOKIG00005028626)	nrp2a (ENSOKIG00005028183)	ENSOKIG00005011393
Rainbow trout	MODERN SPECIES	9	ENSOMYG00000022771	ENSOMYG00000049283	ENSOMYG00000022909	ENSOMYG00000023464 #23	ENSOMYG00000024550	GSK3B (ENSOMYG00000024692)	lrrc58a (ENSOMYG00000024988)	fstl1a (ENSOMYG00000068136)	gja8b (ENSOMYG00000025145)	gja5b (ENSOMYG00000025151)	bcl9 (ENSOMYG00000025199)	cryzl1 (ENSOMYG00000025324)	ENSOMYG00000025910	ENSOMYG00000026780 #10	ENSOMYG00000026885 #19	agpat3 (ENSOMYG00000026986) #22	ENSOMYG00000027279	ENSOMYG00000034060	ENSOMYG00000034120	ENSOMYG00000039305	cpb2 (ENSOMYG00000034176)	alg11 (ENSOMYG00000034204)	ENSOMYG00000063522	raph1b (ENSOMYG00000034223)	ENSOMYG00000034252	mdh1b (ENSOMYG00000049353)	ENSOMYG00000034261	retreg2 (ENSOMYG00000034273)	ENSOMYG00000038150	ENSOMYG00000034291	cnppd1 (ENSOMYG00000034310)
Huchen	MODERN SPECIES	216		ACVR2A (ENSHHUG00000023422)	TRAPPC10 (ENSHHUG00000023974) #23	gsk3ba (ENSHHUG00000024002)	lrrc58a (ENSHHUG00000024495)	fstl1a (ENSHHUG00000024498)	gja8b (ENSHHUG00000024548)	gja5b (ENSHHUG00000024555)	bcl9 (ENSHHUG00000024559)	cbr1 (ENSHHUG00000024580)	cryzl1 (ENSHHUG00000024589)	ENSHHUG00000024613	ENSHHUG00000024768 #10	ENSHHUG00000024796	pdxkb (ENSHHUG00000024802) #19	agpat3 (ENSHHUG00000024810) #22	ENSHHUG00000024830	MGAT5 (ENSHHUG00000024903)	TMEM163 (ENSHHUG00000024983)	ENSHHUG00000024987	cpb2 (ENSHHUG00000024990)	alg11 (ENSHHUG00000025017)	ENSHHUG00000025027	raph1b (ENSHHUG00000025043)	ENSHHUG00000025099	ENSHHUG00000025111	ENSHHUG00000025162	ENSHHUG00000025170	retreg2 (ENSHHUG00000025182)	ENSHHUG00000025202	cnppd1 (ENSHHUG00000025212)
Salmoninae	ANCESTRAL SPECIES	110	ENSGT00520000055635.c.a.a.b.e.b	ENSGT00940000156556.h.d	ENSGT00940000157784.c.d	ENSGT01050000244864.D.t	ENSGT01050000244864.C.f.a	ENSGT00730000110915.b.c.a	ENSGT00510000046499.r.a	ENSGT00940000153577.A	ENSGT00390000013113.u	ENSGT00940000157065.y.a.a	ENSGT00990000205068.b	ENSGT00940000157065.y.b	ENSGT00940000159505.v.a #10	ENSGT00940000158589.b.b.d.a.a	ENSGT00390000003874.a.b.a #19	ENSGT00950000182836.b.b.b.a.l.b #22	ENSGT00940000159094.e.c	ENSGT00940000153470.a.a.a.a.d	ENSGT00940000153470.a.a.a.a.c.a	ENSGT00390000001170.a.b.a	ENSGT00940000159160.h	ENSGT00550000075118.k.b	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00940000178309.a.a.a	ENSGT00940000178309.a.b	ENSGT01030000234607.A.b	ENSGT00530000063410.b.i	ENSGT00940000154394.b.a.b.p.b	ENSGT00940000154394.b.a.b.p.a.b	ENSGT00940000164110.e
Salmoninae_a	ANCESTRAL SPECIES	66	ENSGT00520000055635.c.a.a.b.e.a	ENSGT00940000156556.h.c	ENSGT00940000157784.c.d.f.b	ENSGT01050000244864.D.t.b	ENSGT01050000244864.C.f.a	ENSGT00730000110915.b.c.a	ENSGT00510000046499.r.a	ENSGT00940000153577.A	ENSGT00390000013113.u	ENSGT00940000157065.y.b	ENSGT00940000157065.y.a.a	ENSGT00990000205068.b	ENSGT00940000159505.v.a #10	ENSGT00940000158589.b.b.d.a.a	ENSGT00390000003874.a.b.a #19	ENSGT00950000182836.b.b.b.a.l.b #22	ENSGT00940000159094.e.c	ENSGT00940000153470.a.a.a.a.c.a	ENSGT00390000001170.a.b.a	ENSGT00940000159160.h	ENSGT00550000075118.k.b	ENSGT00390000009001	ENSGT00940000156552.c.b.i	ENSGT00940000178309.a.b	ENSGT01030000234607.A.b	ENSGT00530000063410.b.j	ENSGT00940000154394.b.a.b.p.a.b	ENSGT00530000063410.b.i.a	ENSGT00940000164110.e	ENSGT00950000183019.f.b.b.d.c.b	ENSGT00390000000862.g
Salmo	ANCESTRAL SPECIES	41	ENSGT00390000010372.o.b.a	ENSGT00520000055635.c.a.a.b.e.a	ENSGT00940000156556.h.c	ENSGT00940000157784.c.d.f.b	ENSGT01050000244864.D.t.b	ENSGT01050000244864.C.f.a	ENSGT00730000110915.b.c.a	ENSGT00510000046499.r.a	ENSGT00940000153577.A	ENSGT00390000013113.u	ENSGT00940000157065.y.a.a	ENSGT00990000205068.b	ENSGT00940000159505.v.a #10	ENSGT00940000158589.b.b.c	ENSGT00390000003874.a.b.a #19	ENSGT00950000182836.b.b.b.a.l.b #22	ENSGT00940000159094.e.c.a	ENSGT00940000153470.a.a.a.a.c.a	ENSGT00390000001170.a.b.a	ENSGT00940000159160.h	ENSGT00390000009001	ENSGT00940000156552.c.b.i	ENSGT00940000178309.a.b	ENSGT01030000234607.A.b	ENSGT00530000063410.b.i.a	ENSGT00940000164110.e	ENSGT00950000183019.f.b.b.d.c.b	ENSGT00390000000862.g	ENSGT00940000156160.b.a.e.b.b	ENSGT00940000155270.i.b.c	ENSGT00950000183214.a.b.a.b.f.b.b.l.b
River trout	MODERN SPECIES	32	ENSSTUG00000038537	gsk3ba (ENSSTUG00000038559)	lrrc58a (ENSSTUG00000038928)	fstl1a (ENSSTUG00000038946)	gja8b (ENSSTUG00000039157)	gja5b (ENSSTUG00000039159)	bcl9 (ENSSTUG00000039167)	cbr1 (ENSSTUG00000039226)	setd4 (ENSSTUG00000039243)	cryzl1 (ENSSTUG00000039269)	ITSN1 (ENSSTUG00000039403)	ENSSTUG00000040236	PKNOX1 (ENSSTUG00000040250) #10	TMPRSS3 (ENSSTUG00000040308)	pdxkb (ENSSTUG00000040335) #19	agpat3 (ENSSTUG00000040430) #22	PTH2R (ENSSTUG00000040443)	mgat5 (ENSSTUG00000040541)	TMEM163 (ENSSTUG00000040616)	cpb2 (ENSSTUG00000040657)	ENSSTUG00000040719	raph1b (ENSSTUG00000040779)	ENSSTUG00000041050	ENSSTUG00000041109	mdh1b (ENSSTUG00000041154)	ENSSTUG00000041245	retreg2 (ENSSTUG00000041261)	mdh1b (ENSSTUG00000041334)	ENSSTUG00000041373	ENSSTUG00000041416	cnppd1 (ENSSTUG00000041474)
Atlantic salmon	MODERN SPECIES	8	GSK3B (ENSSSAG00000082990)	LRC58 (ENSSSAG00000007504)	fstl1a (ENSSSAG00000007369)	gja8b (ENSSSAG00000007356)	gja5b (ENSSSAG00000120725)	bcl9 (ENSSSAG00000007293)	DHCA (ENSSSAG00000007266)	setd4 (ENSSSAG00000007257)	ENSSSAG00000087641	cryzl1 (ENSSSAG00000006909)	ENSSSAG00000006749	ENSSSAG00000006712	ENSSSAG00000006699 #10	ENSSSAG00000006674	pdxkb (ENSSSAG00000006375) #19	plcc (ENSSSAG00000006312) #22	ENSSSAG00000006203	ENSSSAG00000006107	ENSSSAG00000006090	cpb2 (ENSSSAG00000007748)	ENSSSAG00000006012	raph1b (ENSSSAG00000060548)	ENSSSAG00000060437	ENSSSAG00000102619	ENSSSAG00000083857	ENSSSAG00000060420	mdh1b (ENSSSAG00000060346)	retreg2 (ENSSSAG00000060269)	ENSSSAG00000060198	abcb6a (ENSSSAG00000059269)	ENSSSAG00000056169
Oncorhynchus	ANCESTRAL SPECIES	43	ENSGT01000000220200	ENSGT00520000055635.c.a.a.b.e.a	ENSGT00940000156556.h.c	ENSGT00940000157784.c.d.f.b	ENSGT00940000157784.c.d.e	ENSGT01050000244864.D.t.b	ENSGT01050000244864.C.f.a	ENSGT00730000110915.b.c.a	ENSGT00510000046499.r.a	ENSGT00940000153577.A	ENSGT00390000013113.u	ENSGT00940000157065.y.b	ENSGT00940000159505.v.a #10	ENSGT00940000158589.b.b.d.a.a	ENSGT00390000003874.a.b.a #19	ENSGT00950000182836.b.b.b.a.l.b #22	ENSGT00940000159094.e.c	ENSGT00940000153470.a.a.a.a.c.a	ENSGT00390000001170.a.b.a	ENSGT00550000075118.k.b	ENSGT00390000009001	ENSGT00940000156552.c.b.i	ENSGT00940000178309.a.b.a	ENSGT01030000234607.A.b	ENSGT00530000063410.b.j	ENSGT00940000154394.b.a.b.p.a.b	ENSGT00940000164110.e	ENSGT00950000183019.f.b.b.d.c.b	ENSGT00390000000862.g	ENSGT00940000156160.b.a.e.b.b	ENSGT00940000155270.i.b.c
Oncorhynchus_a	ANCESTRAL SPECIES	77	ENSGT00390000003873.n.a #23	ENSGT01000000220200	ENSGT00520000055635.c.a.a.b.e.a	ENSGT00940000156556.h.c	ENSGT00940000157784.c.d.e.a	ENSGT01050000244864.D.t.b	ENSGT01050000244864.C.f.a	ENSGT00730000110915.b.c.a	ENSGT00510000046499.r.a	ENSGT00940000153577.A	ENSGT00390000013113.u	ENSGT00940000157065.y.b	ENSGT00940000159505.v.a #10	ENSGT00940000158589.b.b.d.a.a	ENSGT00390000003874.a.b.a #19	ENSGT00950000182836.b.b.b.a.l.b #22	ENSGT00940000159094.e.c	ENSGT00940000153470.a.a.a.a.c.a	ENSGT00390000001170.a.b.a	ENSGT00550000075118.k.b	ENSGT00390000009001	ENSGT00940000156552.c.b.i	ENSGT00940000178309.a.b.a	ENSGT01030000234607.A.b	ENSGT00940000171355	ENSGT00530000063410.b.j	ENSGT00940000154394.b.a.a.a.b.a.b.b	ENSGT00940000164110.e	ENSGT00950000183019.f.b.b.d.c.b	ENSGT00390000000862.g	ENSGT00940000156160.b.a.e.b.b
Chinook salmon	MODERN SPECIES	31	TRAPPC10 (ENSOTSG00005029982) #23	ENSOTSG00005029995	gsk3ba (ENSOTSG00005029996)	lrrc58a (ENSOTSG00005033118)	fstl1a (ENSOTSG00005033119)	gja8b (ENSOTSG00005033154)	gja5b (ENSOTSG00005033155)	bcl9 (ENSOTSG00005033157)	cbr1 (ENSOTSG00005033158)	setd4 (ENSOTSG00005033159)	cryzl1 (ENSOTSG00005033160)	ITSN1 (ENSOTSG00005033171)	PKNOX1 (ENSOTSG00005033432) #10	TMPRSS3 (ENSOTSG00005033433)	pdxkb (ENSOTSG00005033434) #19	agpat3 (ENSOTSG00005033584) #22	PTH2R (ENSOTSG00005033586)	mgat5 (ENSOTSG00005033675)	TMEM163 (ENSOTSG00005033676)	alg11 (ENSOTSG00005033677)	ENSOTSG00005033678	raph1b (ENSOTSG00005033680)	ENSOTSG00005033683	ENSOTSG00005033682	ENSOTSG00005033684	mdh1b (ENSOTSG00005033685)	ENSOTSG00005033686	ENSOTSG00005033687	retreg2 (ENSOTSG00005033688)	ENSOTSG00005033690	cnppd1 (ENSOTSG00005033692)
Coho salmon	MODERN SPECIES	25	TRAPPC10 (ENSOKIG00005012193) #23	ENSOKIG00005012386	ENSOKIG00005012416	fstl1a (ENSOKIG00005012758)	gja8b (ENSOKIG00005012911)	gja5b (ENSOKIG00005012914)	bcl9 (ENSOKIG00005012919)	cbr1 (ENSOKIG00005012945)	setd4 (ENSOKIG00005012951)	cryzl1 (ENSOKIG00005012963)	ITSN1 (ENSOKIG00005013142)	ENSOKIG00005014388	PKNOX1 (ENSOKIG00005014399) #10	TMPRSS3 (ENSOKIG00005014428)	pdxkb (ENSOKIG00005014454) #19	agpat3 (ENSOKIG00005014611) #22	ENSOKIG00005014622	MGAT5 (ENSOKIG00005014718)	TMEM163 (ENSOKIG00005014740)	alg11 (ENSOKIG00005014761)	ENSOKIG00005014796	raph1b (ENSOKIG00005014835)	ENSOKIG00005015160	ENSOKIG00005015200	mdh1b (ENSOKIG00005015216)	ENSOKIG00005015308	retreg2 (ENSOKIG00005015321)	cnppd1 (ENSOKIG00005015367)	abcb6a (ENSOKIG00005015429)	NRP2 (ENSOKIG00005015676)	ENSOKIG00005015730
Rainbow trout	MODERN SPECIES	28	lrrc58a (ENSOMYG00000002587)	fstl1a (ENSOMYG00000002771)	gja8b (ENSOMYG00000002837)	gja5b (ENSOMYG00000002839)	bcl9 (ENSOMYG00000002910)	ENSOMYG00000075174	cbr1 (ENSOMYG00000002963)	setd4 (ENSOMYG00000002969)	ENSOMYG00000063705	cryzl1 (ENSOMYG00000003093)	ENSOMYG00000004934	ENSOMYG00000006896 #10	ENSOMYG00000064086	ENSOMYG00000006962	pdxkb (ENSOMYG00000077377) #19	agpat3 (ENSOMYG00000007079) #22	ENSOMYG00000007149	ENSOMYG00000052504	ENSOMYG00000007256	ENSOMYG00000007325	ENSOMYG00000059805	spp2 (ENSOMYG00000007382)	ENSOMYG00000007640	ENSOMYG00000007851	ENSOMYG00000008031	mdh1b (ENSOMYG00000008096)	ENSOMYG00000053822	retreg2 (ENSOMYG00000008253)	cnppd1 (ENSOMYG00000008360)	abcb6a (ENSOMYG00000008750)	ENSOMYG00000009345
Huchen	MODERN SPECIES	567	gsk3ba (ENSHHUG00000027328)	lrrc58a (ENSHHUG00000027398)	fstl1a (ENSHHUG00000027405)	gja8b (ENSHHUG00000027494)	gja5b (ENSHHUG00000027500)	bcl9 (ENSHHUG00000027505)	setd4 (ENSHHUG00000027509)	cbr1 (ENSHHUG00000027511)	cryzl1 (ENSHHUG00000027516)	ITSN1 (ENSHHUG00000027613)	ENSHHUG00000027865	PKNOX1 (ENSHHUG00000027872) #10	ENSHHUG00000027876	ENSHHUG00000027878	pdxkb (ENSHHUG00000027883) #19	agpat3 (ENSHHUG00000027910) #22	ENSHHUG00000027942	ENSHHUG00000028025	ENSHHUG00000027986
Otomorpha	ANCESTRAL SPECIES	267					ENSGT00520000055635.c.a.b	ENSGT00940000156556.h	ENSGT00940000157784.c.d	ENSGT01050000244864.D	ENSGT01050000244864.C.f.f	ENSGT00510000046499	ENSGT00940000153577.A	ENSGT00390000013113	ENSGT00940000157065	ENSGT00940000158589.b.b	ENSGT00390000003874.a.b #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000171515	ENSGT00940000161898	ENSGT00390000011048.w	ENSGT01050000244891.C.c.b.q	ENSGT00530000063715.b	ENSGT00940000166383	ENSGT00940000155814	ENSGT00940000153676.b	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000157874.q.a	ENSGT00940000157872	ENSGT00940000157849.n	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000163243
Otophysi	ANCESTRAL SPECIES	25	ENSGT00530000063534.b	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156556.h	ENSGT00940000157784.c.d	ENSGT01050000244864.D	ENSGT01050000244864.C.f.f	ENSGT00730000110915.b	ENSGT00510000046499	ENSGT00940000153577.A	ENSGT00390000013113	ENSGT00940000157065	ENSGT00940000158589.b.b	ENSGT00390000003874.a.b #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000171515	ENSGT00940000161898	ENSGT00390000011048.w	ENSGT01050000244891.C.c.b.q	ENSGT00530000063715.b	ENSGT00940000166383	ENSGT00940000155814	ENSGT00940000153676.b	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000157874.q.a	ENSGT00940000157872	ENSGT00940000157849.n	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000163243
Characiphysae	ANCESTRAL SPECIES	9	ENSGT00530000063534.b	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156556.h	ENSGT00940000157784.c.d	ENSGT01050000244864.D	ENSGT01050000244864.C.f.f	ENSGT00730000110915.b	ENSGT00940000179335	ENSGT00940000153577.A	ENSGT00390000013113	ENSGT00940000157065	ENSGT00940000158589.b.b	ENSGT00390000003874.a.b #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000171515	ENSGT00940000161898	ENSGT00390000011048.w	ENSGT01050000244891.C.c.b.q	ENSGT00530000063715.b	ENSGT00940000166383	ENSGT00940000155814	ENSGT00940000153676.b	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000157874.q.a	ENSGT00940000157872	ENSGT00940000157849.n	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000163243
Characiphysae_b	ANCESTRAL SPECIES	117	ENSGT00530000063534.b	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156556.h	ENSGT00940000157784.c.d	ENSGT01050000244864.D	ENSGT01050000244864.C.f.f	ENSGT00730000110915.b	ENSGT00940000179335	ENSGT00940000153577.A	ENSGT00390000013113	ENSGT00940000157065	ENSGT00940000158589.b.b	ENSGT00390000003874.a.b #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000171515	ENSGT00390000011048.w	ENSGT01050000244891.C.c.b.q	ENSGT00530000063715.b	ENSGT00940000166383	ENSGT00940000155814	ENSGT00940000153676.b	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000157874.q.a	ENSGT00940000157872	ENSGT00940000157849.n	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000163243	ENSGT00390000008846
Characoidei	ANCESTRAL SPECIES	147	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156556.h	ENSGT00940000157784.c.d	ENSGT01050000244864.D	ENSGT01050000244864.C.f.f	ENSGT00730000110915.b	ENSGT00940000179335	ENSGT00510000046499	ENSGT00940000153577.A	ENSGT00390000013113	ENSGT00940000157065	ENSGT00940000158589.b.b	ENSGT00390000003874.a.b #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000171515	ENSGT00390000011048.w	ENSGT01050000244891.C.c.b.q	ENSGT00530000063715.b	ENSGT00940000166383	ENSGT00940000155814	ENSGT00940000153676.b	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000157874.q.a	ENSGT00940000157872	ENSGT00940000157849.n	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000163243	ENSGT00390000008846
Mexicana tetra	MODERN SPECIES	3	lrrc58a (ENSAMXG00000032041)	fstl1a (ENSAMXG00000040246)	gja8b (ENSAMXG00000025640)	gja5b (ENSAMXG00000025639)	bcl9 (ENSAMXG00000012514)	ENSAMXG00000034978	ENSAMXG00000034746	cbr1 (ENSAMXG00000012487)	setd4 (ENSAMXG00000032640)	cryzl1 (ENSAMXG00000037451)	ITSN1 (ENSAMXG00000012436)	ENSAMXG00000012433	ENSAMXG00000012410 #10	ENSAMXG00000012377	pdxkb (ENSAMXG00000012352) #19	agpat3 (ENSAMXG00000041421) #22	ENSAMXG00000025823	dleu7 (ENSAMXG00000037461)	spryd7a (ENSAMXG00000040876)	ENSAMXG00000041792	kpna3 (ENSAMXG00000012307)	ebpl (ENSAMXG00000041654)	arl11 (ENSAMXG00000012281)	rcbtb1 (ENSAMXG00000042184)	cdadc1 (ENSAMXG00000012223)	cab39l (ENSAMXG00000012212)	ATP11A (ENSAMXG00000018350)	SOX1 (ENSAMXG00000035402)	ENSAMXG00000030734	ENSAMXG00000039391	arhgef7b (ENSAMXG00000035958)
Red-bellied piranha	MODERN SPECIES	59	fstl1a (ENSPNAG00000000939)	gja8b (ENSPNAG00000008349)	gja5b (ENSPNAG00000006802)	bcl9 (ENSPNAG00000029561)	ENSPNAG00000005001	ENSPNAG00000029487	cbr1 (ENSPNAG00000029439)	cbr1 (ENSPNAG00000029415)	setd4 (ENSPNAG00000029275)	cryzl1 (ENSPNAG00000004544)	ITSN1 (ENSPNAG00000004518)	ENSPNAG00000025611	ENSPNAG00000025605 #10	ENSPNAG00000025569	pdxkb (ENSPNAG00000025536) #19	agpat3 (ENSPNAG00000004913) #22	dleu7 (ENSPNAG00000006544)	spryd7a (ENSPNAG00000025399)	kpna3 (ENSPNAG00000025361)	ebpl (ENSPNAG00000025238)	arl11 (ENSPNAG00000025213)	rcbtb1 (ENSPNAG00000025189)	cdadc1 (ENSPNAG00000025112)	cab39l (ENSPNAG00000025105)	MCF2L (ENSPNAG00000025029)	tubgcp3 (ENSPNAG00000024841)	ATP11A (ENSPNAG00000005022)	SOX1 (ENSPNAG00000024384)	arhgef7b (ENSPNAG00000023914)	ENSPNAG00000023852	lipt1 (ENSPNAG00000023826)
Electric eel	MODERN SPECIES	149	lrrc58a (ENSEEEG00000023552)	fstl1a (ENSEEEG00000023550)	GJA8 (ENSEEEG00000023549)	gja5b (ENSEEEG00000023548)	GJA5 (ENSEEEG00000023547)	bcl9 (ENSEEEG00000023546)	morc3b (ENSEEEG00000023545)	cbr1 (ENSEEEG00000023544)	setd4 (ENSEEEG00000023543)	cryzl1 (ENSEEEG00000023542)	ITSN1 (ENSEEEG00000023539)	ENSEEEG00000023531 #10	ENSEEEG00000023530	ENSEEEG00000023529 #19	pdxkb (ENSEEEG00000023528) #19	agpat3 (ENSEEEG00000023524) #22	dleu7 (ENSEEEG00000023520)	spryd7a (ENSEEEG00000023517)	kpna3 (ENSEEEG00000023036)	ebpl (ENSEEEG00000023013)	arl11 (ENSEEEG00000023012)	rcbtb1 (ENSEEEG00000023011)	cdadc1 (ENSEEEG00000023010)	cab39l (ENSEEEG00000023007)	MCF2L (ENSEEEG00000023002)	tubgcp3 (ENSEEEG00000023000)	ATP11A (ENSEEEG00000022995)	sox1b (ENSEEEG00000022994)
Channel catfish	MODERN SPECIES	18	lrrc58a (ENSIPUG00000020001)	fstl1a (ENSIPUG00000020011)	gja8b (ENSIPUG00000020046)	GJA5 (ENSIPUG00000020050)	bcl9 (ENSIPUG00000020056)	ENSIPUG00000020078	ENSIPUG00000020083	cbr1 (ENSIPUG00000020108)	setd4 (ENSIPUG00000020120)	cryzl1 (ENSIPUG00000020153)	ITSN1 (ENSIPUG00000020172)	ENSIPUG00000020221	PKNOX1 (ENSIPUG00000020239) #10	ENSIPUG00000020258	pdxkb (ENSIPUG00000020281) #19	agpat3 (ENSIPUG00000020311) #22	dleu7 (ENSIPUG00000020350)	kcnrg (ENSIPUG00000020361)	spryd7 (ENSIPUG00000020366)	Kpna3 (ENSIPUG00000020383)	ebpl (ENSIPUG00000020403)	arl11 (ENSIPUG00000020426)	rcbtb1 (ENSIPUG00000020428)	cdadc1 (ENSIPUG00000020446)	cab39l (ENSIPUG00000020458)	mcf2l (ENSIPUG00000020494)	tubgcp3 (ENSIPUG00000020648)	ENSIPUG00000020693	atp11a (ENSIPUG00000020705)	SOX1 (ENSIPUG00000020846)	arhgef7 (ENSIPUG00000020874)
Cyprinoidei	ANCESTRAL SPECIES	5	ENSGT00530000063534.b	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156556.h	ENSGT00940000157784.c.d	ENSGT01050000244864.D	ENSGT01050000244864.C.f.f	ENSGT00730000110915.b	ENSGT00510000046499.z.a	ENSGT00940000153577.A	ENSGT00390000013113	ENSGT00940000157065	ENSGT00940000158589.b.b	ENSGT00390000003874.a.b #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000171515	ENSGT00390000011048.w	ENSGT01050000244891.C.c.b.q	ENSGT00530000063715.b	ENSGT00940000166383	ENSGT00940000155814	ENSGT00940000153676.b	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000157874.q.a	ENSGT00940000157872	ENSGT00940000157849.n	ENSGT00940000155360.B.k	ENSGT00940000163243	ENSGT00390000008846	ENSGT00940000159130
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	291																ENSGT00950000182836.b.b.b.a.m #22	ENSGT00940000171515.a	ENSGT00390000011048.w.b	ENSGT01050000244891.C.c.b.q.b	ENSGT00530000063715.b.f	ENSGT00940000166383.b	ENSGT00940000155814.k	ENSGT00940000153676.b.i	ENSGT00390000004360.a.b.a.a.b.c	ENSGT00940000157874.q.a.b	ENSGT00940000157872.g	ENSGT00940000157849.n.a	ENSGT00940000155360.B.k.a	ENSGT00940000163243.b	ENSGT00390000008846.d	ENSGT00940000159130.b
Goldfish	MODERN SPECIES	3109								cbr1 (ENSCARG00000047026)	setd4 (ENSCARG00000047045)	cryzl1 (ENSCARG00000047067)	ITSN1 (ENSCARG00000047312)	ENSCARG00000056926	PKNOX1 (ENSCARG00000056936) #10	TMPRSS3 (ENSCARG00000057045)	pdxkb (ENSCARG00000057060) #19	agpat3 (ENSCARG00000057379) #22	dleu7 (ENSCARG00000057393)	spryd7a (ENSCARG00000057412)	kpna3 (ENSCARG00000057526)	ebpl (ENSCARG00000060271)	arl11 (ENSCARG00000060279)	rcbtb1 (ENSCARG00000060291)	cab39l (ENSCARG00000060358)	MCF2L (ENSCARG00000060645)	tubgcp3 (ENSCARG00000065407)	ATP11A (ENSCARG00000065522)	arhgef7b (ENSCARG00000065795)	ENSCARG00000067541	lipt1 (ENSCARG00000067873)	PNPLA6 (ENSCARG00000067906)	ENSCARG00000068056
Cyprininae_a	ANCESTRAL SPECIES	630									ENSGT00510000046499.z.a.a	ENSGT00940000153577.A.e	ENSGT00390000013113.s	ENSGT00940000157065.v	ENSGT00390000008902.kb.l.a.b	ENSGT00940000158589.b.b.a	ENSGT00390000003874.a.b.f #19	ENSGT00950000182836.b.b.b.a.m #22	ENSGT00940000171515.a
Common carp reference	MODERN SPECIES	27	cfap58 (ENSCCRG00000058974)	neurl1aa (ENSCCRG00000066918)	ENSCCRG00000071622	stn1 (ENSCCRG00000036591)	fstl1a (ENSCCRG00000036568)	gja8b (ENSCCRG00000059724)	gja5b (ENSCCRG00000036560)	bcl9 (ENSCCRG00000036555)	cbr1 (ENSCCRG00000016100)	setd4 (ENSCCRG00000016096)	cryzl1 (ENSCCRG00000016091)	ENSCCRG00000023880	ENSCCRG00000029837	ENSCCRG00000024402	pdxkb (ENSCCRG00000015920) #19	agpat3 (ENSCCRG00000066238) #22	spryd7a (ENSCCRG00000056049)	kpna3 (ENSCCRG00000013681)	ebpl (ENSCCRG00000015744)	rcbtb1 (ENSCCRG00000015729)	cdadc1 (ENSCCRG00000061386)	cab39l (ENSCCRG00000058713)	ENSCCRG00000013453	tubgcp3 (ENSCCRG00000015786)	ENSCCRG00000015839	sox1b (ENSCCRG00000081551)	arhgef7b (ENSCCRG00000022117)	lipt1 (ENSCCRG00000068783)	ENSCCRG00000029288	ENSCCRG00000022089	map2k7 (ENSCCRG00000034605)
Golden-line barbel	MODERN SPECIES	748								cbr1 (ENSSGRG00000030544)	setd4 (ENSSGRG00000030545)	cryzl1 (ENSSGRG00000030548)	ITSN1 (ENSSGRG00000030843)	ENSSGRG00000033153	ENSSGRG00000033154 #10	TMPRSS3 (ENSSGRG00000033160)	pdxkb (ENSSGRG00000033163) #19	agpat3 (ENSSGRG00000033300) #22	dleu7 (ENSSGRG00000033302)	kpna3 (ENSSGRG00000033321)	ebpl (ENSSGRG00000034117)	arl11 (ENSSGRG00000034118)	rcbtb1 (ENSSGRG00000034119)	cdadc1 (ENSSGRG00000034179)	cab39l (ENSSGRG00000034180)	MCF2L (ENSSGRG00000034228)
Cyprininae	ANCESTRAL SPECIES	38	ENSGT00940000166590.mb	ENSGT00510000046499.z.a	ENSGT00940000153577.A.e	ENSGT00390000013113.s	ENSGT00940000157065.v	ENSGT00390000008902.kb.l.a.b	ENSGT00940000153577.A.f	ENSGT00390000013113.t	ENSGT00940000157065.u	ENSGT00390000008902.kb.l.a.a	ENSGT00940000159505.b #10	ENSGT00940000158589.b.b.a	ENSGT00390000003874.a.b.f #19	ENSGT00940000158589.b.b.b	ENSGT00390000003874.a.b.e #19	ENSGT00950000182836.b.b.b.a.n #22	ENSGT00940000171515.b	ENSGT00390000011048.w.a	ENSGT01050000244891.C.c.b.q.a	ENSGT00530000063715.b.e	ENSGT00940000166383.a	ENSGT00940000155814.l	ENSGT00940000153676.b.j	ENSGT00390000004360.a.b.a.a.b.d	ENSGT00940000157874.q.a.a	ENSGT00940000157872.h	ENSGT00940000157849.n.b	ENSGT00940000155360.B.k.b	ENSGT00940000163243.a	ENSGT00390000008846.c	ENSGT00940000159130.a
Goldfish	MODERN SPECIES		suclg1 (ENSCARG00000009818)	ENSCARG00000009811	cfap58 (ENSCARG00000009733)	neurl1aa (ENSCARG00000009723)	SH3PXD2A (ENSCARG00000009683)	lrrc58a (ENSCARG00000009666)	fstl1a (ENSCARG00000009617)	gja8b (ENSCARG00000009598)	gja5b (ENSCARG00000009592)	bcl9 (ENSCARG00000009578)	morc3b (ENSCARG00000030064)	cryzl1 (ENSCARG00000029858)	ITSN1 (ENSCARG00000024109)	ENSCARG00000023873	pdxkb (ENSCARG00000023845) #19	agpat3 (ENSCARG00000023832) #22	spryd7a (ENSCARG00000023816)	kpna3 (ENSCARG00000023539)	arl11 (ENSCARG00000023504)	rcbtb1 (ENSCARG00000023134)	cdadc1 (ENSCARG00000023111)	cab39l (ENSCARG00000023106)	MCF2L (ENSCARG00000022778)	tubgcp3 (ENSCARG00000022717)	ENSCARG00000022702	ATP11A (ENSCARG00000022535)	sox1b (ENSCARG00000022507)	arhgef7b (ENSCARG00000020751)	ENSCARG00000020114	lipt1 (ENSCARG00000020094)	PNPLA6 (ENSCARG00000014277)
Cyprininae_a	ANCESTRAL SPECIES	66	ENSGT00390000000909.i	ENSGT00940000156556.h.a	ENSGT00940000157784.c.d.a	ENSGT01050000244864.D.e.a	ENSGT01050000244864.C.f.f.b	ENSGT00730000110915.b.e	ENSGT00940000166590.mb	ENSGT00510000046499.z.a.b	ENSGT00940000153577.A.f	ENSGT00390000013113.t	ENSGT00940000157065.u	ENSGT00390000008902.kb.l.a.a	ENSGT00940000159505.b #10	ENSGT00940000158589.b.b.b	ENSGT00390000003874.a.b.e #19	ENSGT00950000182836.b.b.b.a.n #22	ENSGT00940000171515.b	ENSGT00390000011048.w.a	ENSGT01050000244891.C.c.b.q.a	ENSGT00390000011048.w.b	ENSGT01050000244891.C.c.b.q.b	ENSGT00530000063715.b.f	ENSGT00940000166383.a	ENSGT00940000155814.l	ENSGT00940000153676.b.j	ENSGT00390000004360.a.b.a.a.b.d	ENSGT00940000157874.q.a.a	ENSGT00940000157872.h	ENSGT00940000157849.n.b	ENSGT00940000155360.B.k.b	ENSGT00940000163243.a
Common carp reference	MODERN SPECIES	22	lrrc58a (ENSCCRG00000064487)	fstl1a (ENSCCRG00000024571)	gja8b (ENSCCRG00000073119)	gja5b (ENSCCRG00000074145)	bcl9 (ENSCCRG00000015070)	morc3b (ENSCCRG00000024161)	ENSCCRG00000060268	ENSCCRG00000081465	cryzl1 (ENSCCRG00000024163)	ENSCCRG00000070675	ENSCCRG00000055587	ENSCCRG00000016032	pdxkb (ENSCCRG00000061747) #19	dleu7 (ENSCCRG00000019748)	ENSCCRG00000073096	agpat3 (ENSCCRG00000015761) #22	spryd7a (ENSCCRG00000015462)	kpna3 (ENSCCRG00000082723)	ebpl (ENSCCRG00000013658)	arl11 (ENSCCRG00000015739)	rcbtb1 (ENSCCRG00000013618)	cdadc1 (ENSCCRG00000013606)	cab39l (ENSCCRG00000074971)	ENSCCRG00000015680	tubgcp3 (ENSCCRG00000013430)	ENSCCRG00000057536	ENSCCRG00000026907	arhgef7b (ENSCCRG00000077569)	ENSCCRG00000062970	lipt1 (ENSCCRG00000058177)	ENSCCRG00000039927
Golden-line barbel	MODERN SPECIES	338				gja8b (ENSSGRG00000036120)	gja5b (ENSSGRG00000036118)	bcl9 (ENSSGRG00000036116)	morc3b (ENSSGRG00000036081)	cbr1 (ENSSGRG00000036079)	setd4 (ENSSGRG00000036078)	cryzl1 (ENSSGRG00000036037)	ITSN1 (ENSSGRG00000035039)	ENSSGRG00000035020	ENSSGRG00000035018 #10	TMPRSS3 (ENSSGRG00000035015)	pdxkb (ENSSGRG00000035005) #19	agpat3 (ENSSGRG00000035002) #22	dleu7 (ENSSGRG00000034999)	dleu7 (ENSSGRG00000034998)	kpna3 (ENSSGRG00000033197)	ebpl (ENSSGRG00000033176)	arl11 (ENSSGRG00000033175)	arl11 (ENSSGRG00000033174)	rcbtb1 (ENSSGRG00000033173)	cdadc1 (ENSSGRG00000033171)	cab39l (ENSSGRG00000033167)	ENSSGRG00000033164	tubgcp3 (ENSSGRG00000032857)	ATP11A (ENSSGRG00000032229)	arhgef7b (ENSSGRG00000030952)	ENSSGRG00000030930	lipt1 (ENSSGRG00000030929)
Zebrafish	MODERN SPECIES		gja8b (ENSDARG00000015076)	gja5b (ENSDARG00000069450)	bcl9 (ENSDARG00000036687)	morc3b (ENSDARG00000043271)	cbr1 (ENSDARG00000036587)	mhc1zba (ENSDARG00000036588)	mhc1zca (ENSDARG00000069471)	mhc1zea (ENSDARG00000001470)	setd4 (ENSDARG00000036592)	cryzl1 (ENSDARG00000026902)	ITSN1 (ENSDARG00000000086)	ENSDARG00000089853	PKNOX1 (ENSDARG00000036542) #10	TMPRSS3 (ENSDARG00000036545)	pdxkb (ENSDARG00000036546) #19	agpat3 (ENSDARG00000036549) #22	dleu7 (ENSDARG00000094160)	spryd7a (ENSDARG00000052624)	kpna3 (ENSDARG00000052641)	ebpl (ENSDARG00000036636)	arl11 (ENSDARG00000036637)	rcbtb1 (ENSDARG00000036645)	cdadc1 (ENSDARG00000036650)	cab39l (ENSDARG00000036658)	si:busm1-105l16.2 (ENSDARG00000070858)	MCF2L (ENSDARG00000075859)	tubgcp3 (ENSDARG00000029133)	ATP11A (ENSDARG00000008413)	ENSDARG00000053340	sox1b (ENSDARG00000008131)	ENSDARG00000052677
Clupeiformes	ANCESTRAL SPECIES	68	ENSGT00440000033720.a.a.b	ENSGT01020000230582	ENSGT00940000156556.h	ENSGT00940000157784.c.d	ENSGT01050000244864.D	ENSGT01050000244864.C.f.f	ENSGT00940000160457.a	ENSGT00510000046499	ENSGT00940000153577.A	ENSGT00390000013113	ENSGT00940000157065.w.a	ENSGT00390000008902.kb	ENSGT00940000159505 #10	ENSGT00940000158589.b.b	ENSGT00390000003874.a.b #19	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000171515	ENSGT00390000011048.w	ENSGT01050000244891.C.c.b.q	ENSGT00530000063715.b	ENSGT00940000166383	ENSGT00940000155814	ENSGT01100000263563.c.a.b	ENSGT00940000157883.a.b.f	ENSGT00950000182883.b.b	ENSGT00940000155953.q.a	ENSGT00940000159262.d	ENSGT00940000153518.d.b.b	ENSGT00940000160532.h.a	ENSGT00650000093443	ENSGT00940000156894.c
Denticle herring	MODERN SPECIES	15	STS (ENSDCDG00000000963)	anos1a (ENSDCDG00000001086)	ENSDCDG00000001189	lrrc58a (ENSDCDG00000001322)	fstl1a (ENSDCDG00000001332)	gja8b (ENSDCDG00000001358)	gja5b (ENSDCDG00000001360)	bcl9 (ENSDCDG00000001363)	morc3b (ENSDCDG00000001368)	cbr1 (ENSDCDG00000001369)	cryzl1 (ENSDCDG00000001377)	ITSN1 (ENSDCDG00000001544)	PKNOX1 (ENSDCDG00000002847) #10	ENSDCDG00000002850	pdxkb (ENSDCDG00000002856) #19	agpat3 (ENSDCDG00000002869) #22	dleu7 (ENSDCDG00000002876)	spryd7a (ENSDCDG00000002886)	kpna3 (ENSDCDG00000003195)	ebpl (ENSDCDG00000003898)	arl11 (ENSDCDG00000003909)	rcbtb1 (ENSDCDG00000003920)	ENSDCDG00000003933	cckbra (ENSDCDG00000003940)	cycsb (ENSDCDG00000003946)	nxph2b (ENSDCDG00000003948)	spoplb (ENSDCDG00000003949)	ENSDCDG00000003963	lims1 (ENSDCDG00000004001)	ENSDCDG00000004208	ENSDCDG00000013061
Atlantic herring	MODERN SPECIES	13	ENSCHAG00000013446	pudp (ENSCHAG00000013432)	ENSCHAG00000013418	ENSCHAG00000012334	pip5k1ba (ENSCHAG00000012080)	tjp2a (ENSCHAG00000010439)	ENSCHAG00000010378	ENSCHAG00000010366	ENSCHAG00000010350	smc5 (ENSCHAG00000010322)	ENSCHAG00000010313	ENSCHAG00000010285 #10	PKNOX1 (ENSCHAG00000010240) #10	ENSCHAG00000010175	pdxkb (ENSCHAG00000009627) #19	agpat3 (ENSCHAG00000009599) #22	ENSCHAG00000009496	ENSCHAG00000009472	ola1 (ENSCHAG00000009263)	GPR155 (ENSCHAG00000009142)	WIPF1 (ENSCHAG00000009130)	chrna1 (ENSCHAG00000008775)	atp5mc3b (ENSCHAG00000008641)	lnpk (ENSCHAG00000008620)	PTCD1 (ENSCHAG00000008463)	mtx2 (ENSCHAG00000008327)	pibf1 (ENSCHAG00000008292)	KLF5 (ENSCHAG00000008282)	ENSCHAG00000008271	klf12a (ENSCHAG00000008249)	gnrh2 (ENSCHAG00000008228)
Spotted gar	MODERN SPECIES	655	ENSLOCG00000004158	ENSLOCG00000004142	ENSLOCG00000004132	TMEM50B (ENSLOCG00000004113)	ENSLOCG00000004103	ENSLOCG00000004064 #21	RSPH1 (ENSLOCG00000004034)	slc37a1 (ENSLOCG00000003987)	PDE9A (ENSLOCG00000003918) #7	wdr4 (ENSLOCG00000003903) #8	ENSLOCG00000003890 #9	pknox1.1 (ENSLOCG00000003857) #10	ENSLOCG00000003832	ENSLOCG00000003820	pdxka (ENSLOCG00000003790) #19	agpat3 (ENSLOCG00000003758) #22	TRAPPC10 (ENSLOCG00000003708) #23	pwp2h (ENSLOCG00000003663) #24	mbnl2 (ENSLOCG00000003634)	rap2ab (ENSLOCG00000003615)	ENSLOCG00000003595	kpnb3 (ENSLOCG00000003556)	FARP1 (ENSLOCG00000003520)	stk24b (ENSLOCG00000003474)	slc15a1b (ENSLOCG00000003424)	DOCK9 (ENSLOCG00000003216)	GPR18 (ENSLOCG00000017775)	gpr183b (ENSLOCG00000017774)	ubac2 (ENSLOCG00000003185)	si:ch211-184m13.4 (ENSLOCG00000017773)	tm9sf2 (ENSLOCG00000003128)
Reedfish	MODERN SPECIES	12	ENSECRG00000003373	ENSECRG00000003391	siah1 (ENSECRG00000003412)	trim3b (ENSECRG00000003434)	smpd1 (ENSECRG00000003451)	ENSECRG00000003461 #8	ENSECRG00000003470	PKNOX1 (ENSECRG00000003484) #10	ilk (ENSECRG00000003496)	u2af1 (ENSECRG00000003513) #13	cbsb (ENSECRG00000003539) #12	ENSECRG00000003570	RRP1B (ENSECRG00000003580) #21	ENSECRG00000003596	pdxka (ENSECRG00000003602) #19	agpat3 (ENSECRG00000003615) #22	TRAPPC10 (ENSECRG00000003635) #23	pwp2h (ENSECRG00000003662) #24	gatd3 (ENSECRG00000003682) #25	ENSECRG00000003714	ENSECRG00000003827	cckbra (ENSECRG00000003834)	CNGA4 (ENSECRG00000003839)	fhip1b (ENSECRG00000003851)	ENSECRG00000003858	ENSECRG00000003862	ENSECRG00000003872	ENSECRG00000003883	sap18 (ENSECRG00000003892)	lats2 (ENSECRG00000003898)	xpo4 (ENSECRG00000003966)
Elephant shark	MODERN SPECIES	1595	abcg1 (ENSCMIG00000017429)	ENSCMIG00000017444	ADAMTS5 (ENSCMIG00000017456)	ADAMTS1 (ENSCMIG00000017460)	appb (ENSCMIG00000017578)	WDR4 (ENSCMIG00000017823) #8	ENSCMIG00000017830 #7	ENSCMIG00000017832	slc37a1 (ENSCMIG00000017837)	RSPH1 (ENSCMIG00000017856)	RRP1 (ENSCMIG00000017860) #21	ENSCMIG00000017863	pdxka (ENSCMIG00000017870) #19	ENSCMIG00000017877	TRAPPC10 (ENSCMIG00000017905) #23	agpat3 (ENSCMIG00000017972) #22	pwp2h (ENSCMIG00000017979) #24	GBE1 (ENSCMIG00000017987)	cadm2a (ENSCMIG00000018019)	gatd3 (ENSCMIG00000018055) #25	ROBO1 (ENSCMIG00000018180)	robo2 (ENSCMIG00000018396)	PARD3 (ENSCMIG00000018447)
Cyclostomata	ANCESTRAL SPECIES	197																ENSGT00950000182836.b.b.b.a #22	ENSGT00390000010799	ENSGT00390000003873 #23
Lamprey	MODERN SPECIES	127															ENSPMAG00000006334	agpat3 (ENSPMAG00000006339) #22	rpl13a (ENSPMAG00000006362)	ENSPMAG00000006472 #23	ENSPMAG00000006485	pdxkb (ENSPMAG00000006494) #19	bves (ENSPMAG00000006517)	ENSPMAG00000006523
Hagfish	MODERN SPECIES	995														ENSEBUG00000007638	zgc:101858 (ENSEBUG00000003770)	ENSEBUG00000004260 #22	rpl13a (ENSEBUG00000007234)	ENSEBUG00000012056 #23	ENSEBUG00000009064 #23	txnl4b (ENSEBUG00000006810)	ENSEBUG00000006632	ENSEBUG00000015332	ENSEBUG00000005092	mettl14 (ENSEBUG00000006504)	ENSEBUG00000007946	ENSEBUG00000015125	ENSEBUG00000002568	nudc (ENSEBUG00000001914)	ENSEBUG00000009860	ENSEBUG00000014722	ENSEBUG00000004361