Vertebrata	DUPLICATION
Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000182836.b.b.b.a #22
Gnathostomata	ANCESTRAL SPECIES	425										ENSGT00390000012174 #12	ENSGT00940000155587.a.b #11	ENSGT00940000159245 #10	ENSGT00940000157240 #9	ENSGT00390000011821 #21	ENSGT00390000003873 #23	ENSGT00950000182836.b.b.b.a #22	ENSGT00550000074981 #24
Euteleostomi	ANCESTRAL SPECIES	219			ENSGT00390000011821 #21	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000003874	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a
Sarcopterygii	ANCESTRAL SPECIES	889															ENSGT00390000003874	ENSGT00950000182836.b.b.b.a #22
Tetrapoda	ANCESTRAL SPECIES	144	ENSGT00940000160841 #8	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00940000175678	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821 #21	ENSGT00390000003874	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25
Amniota	ANCESTRAL SPECIES		ENSGT00940000158589 #7	ENSGT00940000160841 #8	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821 #21	ENSGT00390000003874	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00520000055625.a	ENSGT00940000155202.i.b	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00940000155600.b	ENSGT00990000203619.A.a
Mammalia	ANCESTRAL SPECIES		ENSGT00940000160841 #8	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00520000055625.a	ENSGT00940000155202.i.b	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00390000004304	ENSGT00940000161545	ENSGT00940000160514	ENSGT00990000203619.A.a	ENSGT01060000248589.C	ENSGT00940000155600.b
Theria	ANCESTRAL SPECIES	1	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00520000055625.a	ENSGT00940000155202.i.b	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00390000004304	ENSGT00940000161545	ENSGT00940000160514	ENSGT00990000203619.A.a	ENSGT01060000248589.C	ENSGT00940000155600.b
Eutheria	ANCESTRAL SPECIES	5	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000158579	ENSGT00940000163845	ENSGT00940000163258	ENSGT00940000158193
Boreoeutheria	ANCESTRAL SPECIES	2	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT01020000234487	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000163845	ENSGT00940000158579	ENSGT00940000155183 #37	ENSGT00940000158193
Euarchontoglires	ANCESTRAL SPECIES	2	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505.x #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT01020000234487	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000158579	ENSGT00940000163845	ENSGT00940000163258	ENSGT00940000158193
Euarchontoglires_A	ANCESTRAL SPECIES	2	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505.x #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000158579	ENSGT00940000163845	ENSGT00940000163258	ENSGT00940000155183 #37
Glires	ANCESTRAL SPECIES	2	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505.x #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000163258	ENSGT00940000163441.f.a.a.a	ENSGT00940000158579	ENSGT00940000163845
Rodentia	ANCESTRAL SPECIES	2	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505.x #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000155183 #37	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977
Rodentia_B	ANCESTRAL SPECIES	2	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505.x #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000155183 #37	ENSGT00940000161526.b #36	ENSGT00940000158193	ENSGT00950000182895.a.b.j
Myomorpha	ANCESTRAL SPECIES	14	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505.x #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000155183 #37	ENSGT00940000161526.b #36	ENSGT00940000158193	ENSGT00950000182895.a.b.j
Muroidea	ANCESTRAL SPECIES	11	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505.x #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000155183 #37	ENSGT00940000161526.b #36	ENSGT00940000158193	ENSGT00950000182895.a.b.j
Muroidea_A	ANCESTRAL SPECIES	8	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505.x #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989.t #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000155183.e #33	ENSGT00940000161526.b #36	ENSGT00940000155183.f #37	ENSGT00940000158193
Cricetidae	ANCESTRAL SPECIES	9	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505.x #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989.t #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000155183.e.a.b #33	ENSGT00940000161526.b #36	ENSGT00940000155183.f #37	ENSGT00940000158193
Cricetinae	ANCESTRAL SPECIES	24	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505.x #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989.t #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000155183.e.a.b.a.b #33	ENSGT00940000161526.b #36	ENSGT00940000155183.f #37	ENSGT00940000155183.e.a.b.a.a ##37
Golden Hamster	MODERN SPECIES	641	Tmprss3 (ENSMAUG00000020969) #7	Ubash3a (ENSMAUG00000019578) #8	Rsph1 (ENSMAUG00000014285) #9	Slc37a1 (ENSMAUG00000021076) #10	Pde9a (ENSMAUG00000001943) #11	Wdr4 (ENSMAUG00000020696) #12	Ndufv3 (ENSMAUG00000020188) #13	Pknox1 (ENSMAUG00000015669) #14	Cbs (ENSMAUG00000020960) #15	U2af1 (ENSMAUG00000020528) #16	Cryaa (ENSMAUG00000017095) #17	Sik1 (ENSMAUG00000018473) #18	Hsf2bp (ENSMAUG00000018607) #19	Rrp1b (ENSMAUG00000021508) #20	Rrp1 (ENSMAUG00000017653) #21	Agpat3 (ENSMAUG00000019017) #22	Trappc10 (ENSMAUG00000021971) #23	Pwp2 (ENSMAUG00000020265) #24	Icosl (ENSMAUG00000019140) #25	Dnmt3l (ENSMAUG00000019680) #26	Aire (ENSMAUG00000021943) #27	Pfkl (ENSMAUG00000017741) #28	Cfap410 (ENSMAUG00000018378) #29	Trpm2 (ENSMAUG00000005011) #30	Lrrc3 (ENSMAUG00000021907) #31	Tspear (ENSMAUG00000011883) #32	ENSMAUG00000012939 #33	ENSMAUG00000007884 #34	ENSMAUG00000021981 #35	ENSMAUG00000002462 #36	ENSMAUG00000021040 #37
Chinese hamster chok1gshd	MODERN SPECIES	204							ENSCGRG00001003985 #19	ENSCGRG00001010889 #20	ENSCGRG00001019133	ENSCGRG00001016759	ENSCGRG00001005047	ENSCGRG00001023882 #20	ENSCGRG00001021534 #19	Cstb (ENSCGRG00001023703)	Rrp1 (ENSCGRG00001011920) #21	Agpat3 (ENSCGRG00001023999) #22	Trappc10 (ENSCGRG00001019791) #23	Pwp2 (ENSCGRG00001020074) #24	Gatd3a (ENSCGRG00001019921)	Icosl (ENSCGRG00001009599) #25	Dnmt3l (ENSCGRG00001016841) #26	Aire (ENSCGRG00001021441) #27	Pfkl (ENSCGRG00001015753) #28	Cfap410 (ENSCGRG00001007084) #29	Trpm2 (ENSCGRG00001014379) #30	Lrrc3 (ENSCGRG00001011603) #31	Tspear (ENSCGRG00001017931) #32	ENSCGRG00001013139 ##37	ENSCGRG00001017382 ##37	Gm36176 (ENSCGRG00001022992) #37	ENSCGRG00001000038 ##37
Cricetidae_B	ANCESTRAL SPECIES	12	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505.x #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989.t #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977	ENSGT01090000259987.a.a.a.c
Prairie vole	MODERN SPECIES	352	Rsph1 (ENSMOCG00000003255) #9	Slc37a1 (ENSMOCG00000013618) #10	Pde9a (ENSMOCG00000012568) #11	Wdr4 (ENSMOCG00000022127) #12	ENSMOCG00000021683 #13	Pknox1 (ENSMOCG00000000944) #14	Cbs (ENSMOCG00000010781) #15	U2af1 (ENSMOCG00000003736) #16	Cryaa (ENSMOCG00000001790) #17	Sik1 (ENSMOCG00000000510) #18	Hsf2bp (ENSMOCG00000006152) #19	Rrp1b (ENSMOCG00000001117) #20	Pdxk (ENSMOCG00000006016)	Cstb (ENSMOCG00000022035)	Rrp1 (ENSMOCG00000015687) #21	ENSMOCG00000010991 #22	Trappc10 (ENSMOCG00000006082) #23	Pwp2 (ENSMOCG00000003844) #24	Gatd3a (ENSMOCG00000019921)	Icosl (ENSMOCG00000018242) #25	Dnmt3l (ENSMOCG00000022517) #26	Aire (ENSMOCG00000008071) #27	ENSMOCG00000013045 #28	Cfap410 (ENSMOCG00000020426) #29	Trpm2 (ENSMOCG00000019856) #30	Lrrc3 (ENSMOCG00000017485) #31	ENSMOCG00000016139 ##37	ENSMOCG00000015079 ##37	ENSMOCG00000014262 #33	ENSMOCG00000013216 ##37	ENSMOCG00000004341 #36
Northern American deer mouse	MODERN SPECIES	13	Pde9a (ENSPEMG00000023664) #11	Wdr4 (ENSPEMG00000022550) #12	Ndufv3 (ENSPEMG00000022595) #13	Pknox1 (ENSPEMG00000021492) #14	Cbs (ENSPEMG00000021739) #15	U2af1 (ENSPEMG00000021041) #16	ENSPEMG00000027416	Cryaa (ENSPEMG00000021591) #17	Sik1 (ENSPEMG00000024129) #18	Hsf2bp (ENSPEMG00000021638) #19	Rrp1b (ENSPEMG00000022490) #20	ENSPEMG00000023225	ENSPEMG00000030967	Cstb (ENSPEMG00000025261)	Rrp1 (ENSPEMG00000018421) #21	Agpat3 (ENSPEMG00000016159) #22	Trappc10 (ENSPEMG00000023811) #23	Pwp2 (ENSPEMG00000009968) #24	Gatd3a (ENSPEMG00000023416)	ENSPEMG00000007525 #25	Dnmt3l (ENSPEMG00000009203) #26	Aire (ENSPEMG00000022217) #27	Pfkl (ENSPEMG00000022772) #28	Cfap410 (ENSPEMG00000022711) #29	Trpm2 (ENSPEMG00000012456) #30	Lrrc3 (ENSPEMG00000030505) #31	Tspear (ENSPEMG00000016261) #32	ENSPEMG00000023368 ##37	ENSPEMG00000021662 #33	ENSPEMG00000029694 ##37	ENSPEMG00000026871 ##37
Murinae	ANCESTRAL SPECIES	18	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505.x #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989.t #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT01050000248522	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000155183.e #33	ENSGT00940000161526.b #36	ENSGT00940000155183.f #37	ENSGT00940000158193
Mus	ANCESTRAL SPECIES	15	ENSGT00950000183216.d.j.b.a	ENSGT00940000153523.b.b	ENSGT00950000183216.d.j.b.b	ENSGT00940000162084	ENSGT00940000159972	ENSGT00390000003207	ENSGT00940000162117	ENSGT00940000162852.a	ENSGT01030000234635.a.a.a.b	ENSGT00940000158035	ENSGT00940000154227.b	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT01050000248522	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00940000161526.b.r.b.b #36	ENSGT00940000155183.e.c #33	ENSGT00940000155183.f.a #37	ENSGT00940000155183.e.d.a #33	ENSGT00510000047718 #32
Mus_A	ANCESTRAL SPECIES	11	ENSGT00950000183216.d.j.b.a	ENSGT00940000153523.b.b	ENSGT00950000183216.d.j.b.b	ENSGT00940000162084	ENSGT00940000159972	ENSGT00390000003207	ENSGT00940000162117	ENSGT00940000162852.a	ENSGT01030000234635.a.a.a.b	ENSGT00940000158035	ENSGT00940000154227.b	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT01050000248522	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00940000155183.e.c.b.a #33	ENSGT00940000155183.e.c.b.b.a #33	ENSGT00510000047718 #32	ENSGT00940000158193	ENSGT00950000182895.a.b.j
Mus_B	ANCESTRAL SPECIES	10	ENSGT00950000183216.d.j.b.a	ENSGT00940000153523.b.b	ENSGT00950000183216.d.j.b.b	ENSGT00940000162084	ENSGT00940000159972	ENSGT00390000003207	ENSGT00940000162117	ENSGT00940000162852.a	ENSGT01030000234635.a.a.a.b	ENSGT00940000158035	ENSGT00940000154227.b	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT01050000248522	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977	ENSGT01090000259987.a.a.a.c
Mouse	MODERN SPECIES	1	Or7a42 (ENSMUSG00000094080)	Or7a38 (ENSMUSG00000094673)	Or7a39 (ENSMUSG00000062873)	Or7c70 (ENSMUSG00000051190)	Slc1a6 (ENSMUSG00000005357)	Ccdc105 (ENSMUSG00000078442)	Casp14 (ENSMUSG00000005355)	Or1i2 (ENSMUSG00000071185)	Syde1 (ENSMUSG00000032714)	Ilvbl (ENSMUSG00000032763)	Or10b1 (ENSMUSG00000107822)	Pdxk (ENSMUSG00000032788)	Cstb (ENSMUSG00000005054)	Rrp1 (ENSMUSG00000061032) #21	Gm56820 (ENSMUSG00000118646)	Agpat3 (ENSMUSG00000001211) #22	Trappc10 (ENSMUSG00000000374) #23	Pwp2 (ENSMUSG00000032834) #24	Gatd3a (ENSMUSG00000053329)	Icosl (ENSMUSG00000000732) #25	Dnmt3l (ENSMUSG00000000730) #26	Aire (ENSMUSG00000000731) #27	Pfkl (ENSMUSG00000020277) #28	Cfap410 (ENSMUSG00000020284) #29	Trpm2 (ENSMUSG00000009292) #30	Lrrc3 (ENSMUSG00000051652) #31	Gm3285 (ENSMUSG00000111915) #33	Gm10318 (ENSMUSG00000071195) #33	Gm36176 (ENSMUSG00000112653) #37	Krtap10-10 (ENSMUSG00000112223) #33	Krtap10-4 (ENSMUSG00000069582) #33
Mus_C	ANCESTRAL SPECIES	7	ENSGT00940000163952.a.d	ENSGT00940000153523.b.a	ENSGT00950000183216.d.j.b.a	ENSGT00940000153523.b.b	ENSGT00940000162084	ENSGT00940000159972	ENSGT00390000003207	ENSGT00940000162117	ENSGT00940000162852.a	ENSGT01030000234635.a.a.a.b	ENSGT00940000158035	ENSGT00940000154227.b	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00940000155183.e.c.b.a #33	ENSGT00510000047718 #32	ENSGT00940000155183.e.d.a.b #33	ENSGT00940000155183.f.a #37	ENSGT00940000155183.e.c.b.b.b #33
Steppe mouse	MODERN SPECIES	3068	Or7a36 (ENSMSIG00000000611)	Or7a37 (ENSMSIG00000000592)	ENSMSIG00000000580	Or7c70 (ENSMSIG00000000575)	Slc1a6 (ENSMSIG00000000543)	Ccdc105 (ENSMSIG00000000509)	Casp14 (ENSMSIG00000000458)	ENSMSIG00000000436	Or1i2 (ENSMSIG00000000403)	Syde1 (ENSMSIG00000000382)	Ilvbl (ENSMSIG00000000223)	Or10b1 (ENSMSIG00000000154)	Pdxk (ENSMSIG00000000114)	Cstb (ENSMSIG00000026515)	Rrp1 (ENSMSIG00000026489) #21	Agpat3 (ENSMSIG00000026402) #22	Trappc10 (ENSMSIG00000026358) #23	Pwp2 (ENSMSIG00000026339) #24	Gatd3a (ENSMSIG00000026316)	Icosl (ENSMSIG00000026290) #25	Dnmt3l (ENSMSIG00000026239) #26	Aire (ENSMSIG00000025315) #27	Pfkl (ENSMSIG00000025294) #28	ENSMSIG00000025258	Trpm2 (ENSMSIG00000025139) #30	ENSMSIG00000025134 #31	Tspear (ENSMSIG00000025116) #32	ENSMSIG00000025108 #33	Gm19668 (ENSMSIG00000025103) #33	Gm9639 (ENSMSIG00000025102) #33
spretus	MODERN SPECIES	1	Or7a37 (MGP_SPRETEiJ_G0016335)	Or7a39 (MGP_SPRETEiJ_G0016334)	MGP_SPRETEiJ_G0016332	MGP_SPRETEiJ_G0016333	Or7c70 (MGP_SPRETEiJ_G0016331)	Slc1a6 (MGP_SPRETEiJ_G0016330)	Ccdc105 (MGP_SPRETEiJ_G0016329)	Casp14 (MGP_SPRETEiJ_G0016328)	Or1i2 (MGP_SPRETEiJ_G0016327)	Syde1 (MGP_SPRETEiJ_G0016326)	Ilvbl (MGP_SPRETEiJ_G0016325)	MGP_SPRETEiJ_G0016324	Pdxk (MGP_SPRETEiJ_G0016323)	Cstb (MGP_SPRETEiJ_G0016322)	Rrp1 (MGP_SPRETEiJ_G0016321) #21	Agpat3 (MGP_SPRETEiJ_G0016320) #22	Trappc10 (MGP_SPRETEiJ_G0016319) #23	Pwp2 (MGP_SPRETEiJ_G0016318) #24	Gatd3a (MGP_SPRETEiJ_G0016317)	Icosl (MGP_SPRETEiJ_G0016316) #25	Dnmt3l (MGP_SPRETEiJ_G0016315) #26	Aire (MGP_SPRETEiJ_G0016314) #27	Pfkl (MGP_SPRETEiJ_G0016313) #28	Cfap410 (MGP_SPRETEiJ_G0016312) #29	Trpm2 (MGP_SPRETEiJ_G0016311) #30	Lrrc3 (MGP_SPRETEiJ_G0016310) #31	MGP_SPRETEiJ_G0016309 #33	Tspear (MGP_SPRETEiJ_G0016308) #32	MGP_SPRETEiJ_G0016307 #37	Gm19668 (MGP_SPRETEiJ_G0016306) #33	Gm10100 (MGP_SPRETEiJ_G0016305) #36
Ryukyu mouse	MODERN SPECIES	1	Or7a36 (MGP_CAROLIEiJ_G0015522)	Or7a37 (MGP_CAROLIEiJ_G0015521)	MGP_CAROLIEiJ_G0015519	Or7a39 (MGP_CAROLIEiJ_G0015520)	Or7c70 (MGP_CAROLIEiJ_G0015518)	Slc1a6 (MGP_CAROLIEiJ_G0015517)	Ccdc105 (MGP_CAROLIEiJ_G0015516)	Casp14 (MGP_CAROLIEiJ_G0015515)	Or1i2 (MGP_CAROLIEiJ_G0015514)	Syde1 (MGP_CAROLIEiJ_G0015513)	Ilvbl (MGP_CAROLIEiJ_G0015512)	MGP_CAROLIEiJ_G0015511	Pdxk (MGP_CAROLIEiJ_G0015510)	Cstb (MGP_CAROLIEiJ_G0015509)	Rrp1 (MGP_CAROLIEiJ_G0015508) #21	Agpat3 (MGP_CAROLIEiJ_G0015507) #22	Trappc10 (MGP_CAROLIEiJ_G0015506) #23	Pwp2 (MGP_CAROLIEiJ_G0015505) #24	Gatd3a (MGP_CAROLIEiJ_G0015504)	Icosl (MGP_CAROLIEiJ_G0015503) #25	Dnmt3l (MGP_CAROLIEiJ_G0015502) #26	Aire (MGP_CAROLIEiJ_G0015501) #27	Pfkl (MGP_CAROLIEiJ_G0015500) #28	Cfap410 (MGP_CAROLIEiJ_G0015499) #29	MGP_CAROLIEiJ_G0015498 #30	Lrrc3 (MGP_CAROLIEiJ_G0015497) #31	Tspear (MGP_CAROLIEiJ_G0015496) #32	Krtap10-10 (MGP_CAROLIEiJ_G0015495) #33	MGP_CAROLIEiJ_G0015494 #33	Gm19668 (MGP_CAROLIEiJ_G0015493) #33	MGP_CAROLIEiJ_G0015492 #33
Shrew mouse	MODERN SPECIES	22	Or7a36 (MGP_PahariEiJ_G0030935)	Or7a37 (MGP_PahariEiJ_G0030934)	MGP_PahariEiJ_G0030932	Or7a39 (MGP_PahariEiJ_G0030933)	Or7c70 (MGP_PahariEiJ_G0030931)	MGP_PahariEiJ_G0030930	Slc1a6 (MGP_PahariEiJ_G0030929)	Ccdc105 (MGP_PahariEiJ_G0030928)	Casp14 (MGP_PahariEiJ_G0030927)	Or1i2 (MGP_PahariEiJ_G0030926)	Syde1 (MGP_PahariEiJ_G0030925)	Ilvbl (MGP_PahariEiJ_G0030924)	Pdxk (MGP_PahariEiJ_G0030923)	Cstb (MGP_PahariEiJ_G0030922)	Rrp1 (MGP_PahariEiJ_G0030921) #21	Agpat3 (MGP_PahariEiJ_G0030920) #22	Trappc10 (MGP_PahariEiJ_G0030919) #23	Pwp2 (MGP_PahariEiJ_G0030918) #24	Gatd3a (MGP_PahariEiJ_G0030917)	MGP_PahariEiJ_G0030916 #25	Dnmt3l (MGP_PahariEiJ_G0030915) #26	Aire (MGP_PahariEiJ_G0030914) #27	Pfkl (MGP_PahariEiJ_G0030913) #28	Cfap410 (MGP_PahariEiJ_G0030912) #29	MGP_PahariEiJ_G0030911 #30	Lrrc3 (MGP_PahariEiJ_G0030910) #31	Tspear (MGP_PahariEiJ_G0030909) #32	MGP_PahariEiJ_G0030908 #33	MGP_PahariEiJ_G0030907 #33	MGP_PahariEiJ_G0030906 #37	MGP_PahariEiJ_G0030905 #36
Rat	MODERN SPECIES	12	Slc37a1 (ENSRNOG00000001169) #10	Pde9a (ENSRNOG00000001174) #11	Wdr4 (ENSRNOG00000001181) #12	Ndufv3 (ENSRNOG00000001182) #13	Pknox1 (ENSRNOG00000001184) #14	Cbs (ENSRNOG00000029528) #15	U2af1 (ENSRNOG00000045860) #16	Sik1 (ENSRNOG00000001189) #18	Hsf2bp (ENSRNOG00000001193) #19	Rrp1b (ENSRNOG00000001194) #20	RGD1566085 (ENSRNOG00000068407)	Pdxk (ENSRNOG00000049937)	Cstb (ENSRNOG00000001201)	Rrp1 (ENSRNOG00000001203) #21	Gm56820 (ENSRNOG00000062695)	Agpat3 (ENSRNOG00000001205) #22	Trappc10 (ENSRNOG00000023210) #23	Pwp2 (ENSRNOG00000001210) #24	Gatd3a (ENSRNOG00000001211)	Icoslg (ENSRNOG00000023109) #25	Dnmt3l (ENSRNOG00000001212) #26	Aire (ENSRNOG00000001213) #27	Pfkl (ENSRNOG00000001214) #28	Cfap410 (ENSRNOG00000001215) #29	Trpm2 (ENSRNOG00000001216) #30	Lrrc3 (ENSRNOG00000001217) #31	Tspear (ENSRNOG00000001219) #32	LOC100365646 (ENSRNOG00000001218) #33	LOC120098854 (ENSRNOG00000067436) #33	LOC120098855 (ENSRNOG00000042329) #33	LOC690415 (ENSRNOG00000069553) #33
Upper Galilee mountains blind mole rat	MODERN SPECIES	557	Rsph1 (ENSNGAG00000005022) #9	Slc37a1 (ENSNGAG00000022440) #10	Pde9a (ENSNGAG00000014370) #11	Wdr4 (ENSNGAG00000017117) #12	Ndufv3 (ENSNGAG00000011220) #13	Pknox1 (ENSNGAG00000015912) #14	Cbs (ENSNGAG00000011354) #15	U2af1 (ENSNGAG00000021641) #16	Cryaa (ENSNGAG00000024156) #17	Sik1 (ENSNGAG00000015397) #18	Hsf2bp (ENSNGAG00000002647) #19	Rrp1b (ENSNGAG00000021073) #20	Pdxk (ENSNGAG00000011007)	Cstb (ENSNGAG00000001985)	ENSNGAG00000022344 #21	Agpat3 (ENSNGAG00000023781) #22	ENSNGAG00000020131 #23	Pwp2 (ENSNGAG00000021106) #24	Gatd3a (ENSNGAG00000023649)	ENSNGAG00000007536 #25	Dnmt3l (ENSNGAG00000004497) #26	Aire (ENSNGAG00000006411) #27	Pfkl (ENSNGAG00000023632) #28	Cfap410 (ENSNGAG00000008743) #29	Trpm2 (ENSNGAG00000015763) #30	Lrrc3 (ENSNGAG00000024059) #31	Tspear (ENSNGAG00000022570) #32	ENSNGAG00000012871 #37	ENSNGAG00000023342 #37	ENSNGAG00000000805 #37
Lesser Egyptian jerboa	MODERN SPECIES	54	Slc37a1 (ENSJJAG00000009176) #10	Pde9a (ENSJJAG00000022814) #11	Wdr4 (ENSJJAG00000016232) #12	ENSJJAG00000012928 #13	ENSJJAG00000022210	Pknox1 (ENSJJAG00000003326) #14	Cbs (ENSJJAG00000019675) #15	U2af1 (ENSJJAG00000000485) #16	Cryaa (ENSJJAG00000008890) #17	Sik1 (ENSJJAG00000021978) #18	Hsf2bp (ENSJJAG00000011558) #19	Rrp1b (ENSJJAG00000021279) #20	Pdxk (ENSJJAG00000016609)	ENSJJAG00000019836	Rrp1 (ENSJJAG00000018886) #21	Agpat3 (ENSJJAG00000019770) #22	Lbh (ENSJJAG00000023694)	Lclat1 (ENSJJAG00000015441) ##22	Capn13 (ENSJJAG00000015680)	Galnt14 (ENSJJAG00000020390)	Ehd3 (ENSJJAG00000013415)	Xdh (ENSJJAG00000017980)
Rodentia_A	ANCESTRAL SPECIES	5	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505.x #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000155183 #37	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977
Sciuridae	ANCESTRAL SPECIES	12	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505.x #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977	ENSGT01090000259987.a.a.a
Marmotini	ANCESTRAL SPECIES	13	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505.x #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826.lb	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000158193	ENSGT00950000182895.a.b.j.o	ENSGT00390000004977	ENSGT01090000259987.a.a.a
Alpin marmot	MODERN SPECIES	4	SLC37A1 (ENSMMMG00000010809) #10	PDE9A (ENSMMMG00000010894) #11	WDR4 (ENSMMMG00000011036) #12	ENSMMMG00000011055 #13	PKNOX1 (ENSMMMG00000011067) #14	CBS (ENSMMMG00000011087) #15	U2AF1 (ENSMMMG00000011117) #16	CRYAA (ENSMMMG00000011152) #17	SIK1 (ENSMMMG00000011169) #18	HSF2BP (ENSMMMG00000011193) #19	RRP1B (ENSMMMG00000011209) #20	PDXK (ENSMMMG00000011250)	ENSMMMG00000011256	RRP1 (ENSMMMG00000011263) #21	ENSMMMG00000011344	AGPAT3 (ENSMMMG00000011363) #22	TRAPPC10 (ENSMMMG00000011441) #23	PWP2 (ENSMMMG00000011468) #24	GATD3 (ENSMMMG00000012356)	ICOSLG (ENSMMMG00000012361) #25	ENSMMMG00000012363 #26	AIRE (ENSMMMG00000012367) #27	ENSMMMG00000012488 #28	CFAP410 (ENSMMMG00000012554) #29	TRPM2 (ENSMMMG00000012573) #30	LRRC3 (ENSMMMG00000012614) #31	TSPEAR (ENSMMMG00000012623) #32	ENSMMMG00000012640	ENSMMMG00000012650	ENSMMMG00000012657 #36	UBE2G2 (ENSMMMG00000012664)
Marmotini_b	ANCESTRAL SPECIES	30	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505.x #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826.lb	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a.db	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31
Arctic ground squirrel	MODERN SPECIES	443	RSPH1 (ENSUPAG00010003495) #9	SLC37A1 (ENSUPAG00010003472) #10	PDE9A (ENSUPAG00010003388) #11	WDR4 (ENSUPAG00010003363) #12	ENSUPAG00010003358 #13	PKNOX1 (ENSUPAG00010003344) #14	CBS (ENSUPAG00010003327) #15	U2AF1 (ENSUPAG00010003308) #16	CRYAA (ENSUPAG00010003295) #17	SIK1 (ENSUPAG00010003268) #18	HSF2BP (ENSUPAG00010003260) #19	RRP1B (ENSUPAG00010003249) #20	PDXK (ENSUPAG00010003236)	ENSUPAG00010003225	RRP1 (ENSUPAG00010003195) #21	AGPAT3 (ENSUPAG00010003091) #22	TRAPPC10 (ENSUPAG00010003060) #23	PWP2 (ENSUPAG00010003026) #24	GATD3 (ENSUPAG00010003022)	ICOSLG (ENSUPAG00010003013) #25	DNMT3L (ENSUPAG00010003002) #26	AIRE (ENSUPAG00010002765) #27	PFKL (ENSUPAG00010002724) #28	CFAP410 (ENSUPAG00010002705) #29	TRPM2 (ENSUPAG00010002652) #30	LRRC3 (ENSUPAG00010002648) #31
Squirrel	MODERN SPECIES	100	RSPH1 (ENSSTOG00000002331) #9	SLC37A1 (ENSSTOG00000025445) #10	PDE9A (ENSSTOG00000001452) #11	WDR4 (ENSSTOG00000000442) #12	NDUFV3 (ENSSTOG00000000445) #13	PKNOX1 (ENSSTOG00000000447) #14	CBS (ENSSTOG00000024905) #15	U2AF1 (ENSSTOG00000012766) #16	CRYAA (ENSSTOG00000019571) #17	SIK1 (ENSSTOG00000003810) #18	HSF2BP (ENSSTOG00000011783) #19	RRP1B (ENSSTOG00000011790) #20	PDXK (ENSSTOG00000007194)	CSTB (ENSSTOG00000025748)	RRP1 (ENSSTOG00000011116) #21	AGPAT3 (ENSSTOG00000010466) #22	TRAPPC10 (ENSSTOG00000029008) #23	PWP2 (ENSSTOG00000014194) #24	ENSSTOG00000029443	ICOSLG (ENSSTOG00000026567) #25	DNMT3L (ENSSTOG00000028895) #26	AIRE (ENSSTOG00000023870) #27	PFKL (ENSSTOG00000026523) #28	CFAP410 (ENSSTOG00000008553) #29	TRPM2 (ENSSTOG00000024472) #30	LRRC3 (ENSSTOG00000023533) #31
Eurasian red squirrel	MODERN SPECIES	1	PDE9A (ENSSVLG00005011481) #11	ENSSVLG00005011248	WDR4 (ENSSVLG00005025158) #12	ENSSVLG00005025141 #13	PKNOX1 (ENSSVLG00005025120) #14	CBS (ENSSVLG00005025055) #15	U2AF1 (ENSSVLG00005024981) #16	CRYAA (ENSSVLG00005024913) #17	ENSSVLG00005024890 #18	ENSSVLG00005024861	HSF2BP (ENSSVLG00005024842) #19	ENSSVLG00005024819 #20	PDXK (ENSSVLG00005024785)	CSTB (ENSSVLG00005024758)	RRP1 (ENSSVLG00005024724) #21	AGPAT3 (ENSSVLG00005024678) #22	TRAPPC10 (ENSSVLG00005024638) #23	PWP2 (ENSSVLG00005024557) #24	GATD3 (ENSSVLG00005024474)	ICOSLG (ENSSVLG00005024369) #25	ENSSVLG00005024326 #26	AIRE (ENSSVLG00005023997) #27	PFKL (ENSSVLG00005023925) #28	CFAP410 (ENSSVLG00005023882) #29	TRPM2 (ENSSVLG00005023598) #30	LRRC3 (ENSSVLG00005023556) #31	ENSSVLG00005023369	ENSSVLG00005023080	ENSSVLG00005022707	ENSSVLG00005022624	TSPEAR (ENSSVLG00005022529) #32
Hystricomorpha	ANCESTRAL SPECIES	60	ENSGT00940000162185	ENSGT00950000183022.b	ENSGT00940000158212.B	ENSGT00390000007989	ENSGT00940000155992	ENSGT00390000015709	ENSGT01090000259987.a.a.a	ENSGT00390000004977	ENSGT00950000182895.a.b.j	ENSGT00940000158193	ENSGT00940000155183 #37	ENSGT00510000047718 #32	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00950000183004.a.b.a.b	ENSGT00940000155686.n.b
Hystricomorpha_a	ANCESTRAL SPECIES	37	ENSGT00940000162185	ENSGT00950000183022.b	ENSGT00940000158212.B	ENSGT00390000007989	ENSGT00940000155992	ENSGT00390000015709	ENSGT01090000259987.a.a.a	ENSGT00390000004977	ENSGT00950000182895.a.b.j	ENSGT00940000158193	ENSGT00940000155183 #37	ENSGT00510000047718 #32	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00950000183004.a.b.a.b	ENSGT00940000155686.n.b
Hystricomorpha_b	ANCESTRAL SPECIES	34	ENSGT00940000162185	ENSGT00950000183022.b	ENSGT00940000158212.B	ENSGT00390000007989	ENSGT00940000155992	ENSGT00390000015709	ENSGT01090000259987.a.a.a	ENSGT00390000004977	ENSGT00950000182895.a.a.a.b.f	ENSGT00940000158193	ENSGT00940000155183 #37	ENSGT00510000047718 #32	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00950000183004.a.b.a.b	ENSGT00940000155686.n.b
Long-tailed chinchilla	MODERN SPECIES	114	SLX9 (ENSCLAG00000015540)	ITGB2 (ENSCLAG00000011530)	PTTG1IP (ENSCLAG00000008686)	ENSCLAG00000006914	UBE2G2 (ENSCLAG00000006675)	ENSCLAG00000006283	ENSCLAG00000005933	ENSCLAG00000005246	ENSCLAG00000004501 #37	ENSCLAG00000007645	ENSCLAG00000005431 #37	TSPEAR (ENSCLAG00000006788) #32	PDXK (ENSCLAG00000004982)	CSTB (ENSCLAG00000009970)	RRP1 (ENSCLAG00000011639) #21	AGPAT3 (ENSCLAG00000005641) #22	TRAPPC10 (ENSCLAG00000004935) #23	PWP2 (ENSCLAG00000009503) #24	GATD3 (ENSCLAG00000006863)	ICOSLG (ENSCLAG00000004572) #25	DNMT3L (ENSCLAG00000008128) #26	AIRE (ENSCLAG00000004699) #27	PFKL (ENSCLAG00000006907) #28	CFAP410 (ENSCLAG00000005977) #29	TRPM2 (ENSCLAG00000007001) #30	LRRC3 (ENSCLAG00000006488) #31	TMPRSS2 (ENSCLAG00000006480)	FAM3B (ENSCLAG00000005832)	ENSCLAG00000006920	BACE2 (ENSCLAG00000006208)	DSCAM (ENSCLAG00000016317)
Degu	MODERN SPECIES	86	COL6A2 (ENSODEG00000013531)	ENSODEG00000020105	ENSODEG00000013981	PCBP3 (ENSODEG00000012873)	ENSODEG00000013398	ENSODEG00000020203	POFUT2 (ENSODEG00000013451)	ADARB1 (ENSODEG00000014508)	ITGB2 (ENSODEG00000013569)	PTTG1IP (ENSODEG00000013537)	ENSODEG00000013838	ENSODEG00000014012	ENSODEG00000013439 #37	TSPEAR (ENSODEG00000013818) #32	PDXK (ENSODEG00000013386)	AGPAT3 (ENSODEG00000012787) #22	ENSODEG00000013648 #23	PWP2 (ENSODEG00000013073) #24	ENSODEG00000013954	PFKL (ENSODEG00000014418) #28	CFAP410 (ENSODEG00000012840) #29	TRPM2 (ENSODEG00000013043) #30	LRRC3 (ENSODEG00000020091) #31	DSCAM (ENSODEG00000012858)	BACE2 (ENSODEG00000013570)	ENSODEG00000014232	ENSODEG00000013917	TMPRSS2 (ENSODEG00000013358)	RIPK4 (ENSODEG00000013779)	PRDM15 (ENSODEG00000013112)	C2CD2 (ENSODEG00000014616)
Guinea pig	MODERN SPECIES	90	ADARB1 (ENSCPOG00000022969)	SLX9 (ENSCPOG00000036519)	ITGB2 (ENSCPOG00000025922)	PTTG1IP (ENSCPOG00000023250)	SUMO3 (ENSCPOG00000025203)	UBE2G2 (ENSCPOG00000035970)	ENSCPOG00000037876 #37	ENSCPOG00000032969 #37	ENSCPOG00000038786 #37	ENSCPOG00000034347 #37	TSPEAR (ENSCPOG00000004362) #32	ENSCPOG00000036402 #37	PDXK (ENSCPOG00000039719)	CSTB (ENSCPOG00000031855)	RRP1 (ENSCPOG00000038986) #21	AGPAT3 (ENSCPOG00000032718) #22	TRAPPC10 (ENSCPOG00000011117) #23	PWP2 (ENSCPOG00000023616) #24	GATD3 (ENSCPOG00000011419)	DNMT3L (ENSCPOG00000004070) #26	AIRE (ENSCPOG00000019868) #27	PFKL (ENSCPOG00000019438) #28	CFAP410 (ENSCPOG00000009611) #29	TRPM2 (ENSCPOG00000023512) #30	LRRC3 (ENSCPOG00000030436) #31	PCP4 (ENSCPOG00000039173)	DSCAM (ENSCPOG00000005367)	BACE2 (ENSCPOG00000007403)	ENSCPOG00000025373	ENSCPOG00000013108	ENSCPOG00000021489
Naked mole-rat female	MODERN SPECIES	11	SLX9 (ENSHGLG00000045493)	ITGB2 (ENSHGLG00000013472)	ENSHGLG00000049629	PTTG1IP (ENSHGLG00000033185)	ENSHGLG00000037860	ENSHGLG00000009258	ENSHGLG00000014199 #32	ENSHGLG00000005505 #37	ENSHGLG00000043957	ENSHGLG00000038544 #37	ENSHGLG00000007283	ENSHGLG00000015985	ENSHGLG00000046004	CSTB (ENSHGLG00000047009)	RRP1 (ENSHGLG00000050109) #21	AGPAT3 (ENSHGLG00000048529) #22	TRAPPC10 (ENSHGLG00000013176) #23	PWP2 (ENSHGLG00000017401) #24	ENSHGLG00000018104	ENSHGLG00000013877 #25	ENSHGLG00000009448 #26	AIRE (ENSHGLG00000016716) #27	PFKL (ENSHGLG00000017234) #28	ENSHGLG00000016027 #29	TRPM2 (ENSHGLG00000018785) #30	ENSHGLG00000042683 #31	PCP4 (ENSHGLG00000043480)	ENSHGLG00000005193	ENSHGLG00000008616	ENSHGLG00000006993	ENSHGLG00000041834
Lagomorpha	ANCESTRAL SPECIES																	ENSGT00950000182836.b.b.b.a #22
Pika	MODERN SPECIES	2592																AGPAT3 (ENSOPRG00000013786) #22
Tree shrew	MODERN SPECIES	8189																AGPAT3 (ENSTBEG00000011207) #22
Primates	ANCESTRAL SPECIES	1	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505.x #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT01020000234487	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000158579	ENSGT00940000163845	ENSGT00940000163258	ENSGT00940000158193
Haplorrhini	ANCESTRAL SPECIES	22	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505.x #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT01020000234487	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000163258.j	ENSGT00940000164049	ENSGT00940000163527	ENSGT00940000158579
Simiiformes	ANCESTRAL SPECIES	1	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505.x #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00860000135708	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT01020000234487	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000158579.l.b.b.a	ENSGT00940000163258.j	ENSGT00940000158579.l.b.b.b	ENSGT00940000163258.i.b
Platyrrhini	ANCESTRAL SPECIES	31	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505.x #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00860000135708	ENSGT00940000154826.qb	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00910000147401	ENSGT01020000234487	ENSGT00390000003873.v #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00940000158579.k	ENSGT00940000158579.l.a	ENSGT00940000163258.i.b
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	417																ENSANAG00000031608 #22	ENSANAG00000019650	NPAS2 (ENSANAG00000029045)	ENSANAG00000023888	TBC1D8 (ENSANAG00000003815)	ENSANAG00000031938	CNOT11 (ENSANAG00000028092)	RNF149 (ENSANAG00000031925)	CREG2 (ENSANAG00000036025)
Mas night monkey	MODERN SPECIES	1376	SLC37A1 (ENSANAG00000028307) #10	PDE9A (ENSANAG00000037833) #11	WDR4 (ENSANAG00000026274) #12	NDUFV3 (ENSANAG00000026013) #13	PKNOX1 (ENSANAG00000022045) #14	CBS (ENSANAG00000032848) #15	ENSANAG00000026034 #16	CRYAA (ENSANAG00000021687) #17	SIK1 (ENSANAG00000038083) #18	HSF2BP (ENSANAG00000037216) #19	RRP1B (ENSANAG00000034889) #20	ENSANAG00000033810	PDXK (ENSANAG00000019464)	ENSANAG00000038089	RRP1 (ENSANAG00000037815) #21	ENSANAG00000036034 #22	ENSANAG00000035921	TRAPPC10 (ENSANAG00000032975) #23	PWP2 (ENSANAG00000034845) #24	GATD3 (ENSANAG00000032510)	ENSANAG00000031721 #25	DNMT3L (ENSANAG00000027897) #26	AIRE (ENSANAG00000031045) #27	PFKL (ENSANAG00000022126) #28	CFAP410 (ENSANAG00000021390) #29	TRPM2 (ENSANAG00000034661) #30	TSPEAR (ENSANAG00000032724) #32	ENSANAG00000032475	ENSANAG00000028487	ENSANAG00000027667	ENSANAG00000027010
Cebidae	ANCESTRAL SPECIES	32	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505.x #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826.qb	ENSGT00860000135708	ENSGT00940000154826.pb	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT01020000234487	ENSGT00390000003873.v #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00940000158579.k	ENSGT00940000158579.l.a	ENSGT00940000163258.i.b	ENSGT00940000163845.c
Cebidae_a	ANCESTRAL SPECIES	29	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196.m #13	ENSGT00940000159505.x #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826.qb	ENSGT00860000135708	ENSGT00940000154826.pb	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000016927.z	ENSGT00390000003873.v #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000158579.k	ENSGT00940000158579.l.a	ENSGT00940000163258.i.b	ENSGT00940000163845.c	ENSGT00940000158579.l.b.b.a.b
Bolivian squirrel monkey	MODERN SPECIES	66	PDE9A (ENSSBOG00000027099) #11	WDR4 (ENSSBOG00000026351) #12	NDUFV3 (ENSSBOG00000019466) #13	ENSSBOG00000004329	PKNOX1 (ENSSBOG00000018950) #14	CBS (ENSSBOG00000022215) #15	U2AF1 (ENSSBOG00000027084) #16	CRYAA (ENSSBOG00000026135) #17	SIK1 (ENSSBOG00000033825) #18	HSF2BP (ENSSBOG00000031228) #19	RRP1B (ENSSBOG00000034727) #20	ENSSBOG00000033475	PDXK (ENSSBOG00000023925)	ENSSBOG00000021578	RRP1 (ENSSBOG00000034689) #21	AGPAT3 (ENSSBOG00000026342) #22	TRAPPC10 (ENSSBOG00000018376) #23	PWP2 (ENSSBOG00000034554) #24	GATD3 (ENSSBOG00000033759)	ICOSLG (ENSSBOG00000031169) #25	DNMT3L (ENSSBOG00000030998) #26	AIRE (ENSSBOG00000027491) #27	PFKL (ENSSBOG00000024155) #28	CFAP410 (ENSSBOG00000022331) #29	TRPM2 (ENSSBOG00000023964) #30	ENSSBOG00000030908	ENSSBOG00000029917	ENSSBOG00000025216	ENSSBOG00000027330	ENSSBOG00000034072	ENSSBOG00000033182
Capuchin	MODERN SPECIES	112	ENSCCAG00000033172	PDE9A (ENSCCAG00000001044) #11	WDR4 (ENSCCAG00000022755) #12	ENSCCAG00000022392 #13	PKNOX1 (ENSCCAG00000022902) #14	CBS (ENSCCAG00000032722) #15	U2AF1 (ENSCCAG00000036938) #16	CRYAA (ENSCCAG00000030217) #17	SIK1 (ENSCCAG00000028295) #18	HSF2BP (ENSCCAG00000031814) #19	RRP1B (ENSCCAG00000029384) #20	ENSCCAG00000001912	PDXK (ENSCCAG00000035149)	ENSCCAG00000030098	RRP1 (ENSCCAG00000029828) #21	AGPAT3 (ENSCCAG00000035106) #22	ENSCCAG00000022399	TRAPPC10 (ENSCCAG00000028731) #23	PWP2 (ENSCCAG00000034616) #24	GATD3 (ENSCCAG00000023616)	ICOSLG (ENSCCAG00000034711) #25	DNMT3L (ENSCCAG00000028251) #26	AIRE (ENSCCAG00000033062) #27	PFKL (ENSCCAG00000023028) #28	CFAP410 (ENSCCAG00000019718) #29	TRPM2 (ENSCCAG00000035480) #30	ENSCCAG00000022693	ENSCCAG00000031995	ENSCCAG00000012157	ENSCCAG00000027045	ENSCCAG00000032996
Marmoset	MODERN SPECIES	13	RSPH1 (ENSCJAG00000005333) #9	SLC37A1 (ENSCJAG00000005291) #10	PDE9A (ENSCJAG00000085834) #11	WDR4 (ENSCJAG00000015778) #12	NDUFV3 (ENSCJAG00000015786) #13	PKNOX1 (ENSCJAG00000040086) #14	CBS (ENSCJAG00000015824) #15	U2AF1 (ENSCJAG00000015843) #16	CRYAA (ENSCJAG00000070733) #17	SIK1 (ENSCJAG00000015879) #18	HSF2BP (ENSCJAG00000059885) #19	RRP1B (ENSCJAG00000017077) #20	ENSCJAG00000043205	ENSCJAG00000071745	ENSCJAG00000052744	AGPAT3 (ENSCJAG00000086643) #22	ENSCJAG00000080531	TRAPPC10 (ENSCJAG00000005608) #23	PWP2 (ENSCJAG00000005570) #24	GATD3 (ENSCJAG00000005560)	ICOSLG (ENSCJAG00000003576) #25	DNMT3L (ENSCJAG00000087076) #26	AIRE (ENSCJAG00000013748) #27	PFKL (ENSCJAG00000017630) #28	CFAP410 (ENSCJAG00000017611) #29	TRPM2 (ENSCJAG00000073600) #30	LRRC3 (ENSCJAG00000081918) #31	TSPEAR (ENSCJAG00000015329) #32	ENSCJAG00000046358	KRTAP10-3 (ENSCJAG00000077838)	ENSCJAG00000041374
Catarrhini	ANCESTRAL SPECIES	25	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT01000000215029	ENSGT00940000159505.x #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00860000135708	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT01020000234487	ENSGT00950000182836.b.b.b.a #22	ENSGT00910000147401	ENSGT00390000003873 #23	ENSGT00900000140979.a.a.`b.a.o.a	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000158579.l.b.b.a	ENSGT00940000163258.j
Cercopithecidae	ANCESTRAL SPECIES	28	ENSGT00390000012196 #13	ENSGT01000000215029	ENSGT00940000159505.x #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a.ge #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826.nb	ENSGT00860000135708	ENSGT00940000154826.ob	ENSGT00390000011821.b #21	ENSGT01020000234487	ENSGT00950000182836.b.b.b.a #22	ENSGT00910000147401	ENSGT00390000003873 #23	ENSGT00900000140979.a.a.`b.a.o.a	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000158579.l.b.a	ENSGT00940000158579.l.b.b.a.f
Rhinopithecus	ANCESTRAL SPECIES	270									ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00910000147958	ENSGT00860000135708	ENSGT00390000003874	ENSGT00940000154826.ob	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000158579.l.b.a	ENSGT00940000158579.l.b.b.a.f
Black snub-nosed monkey	MODERN SPECIES	924									HSF2BP (ENSRBIG00000038854) #19	RRP1B (ENSRBIG00000041689) #20	ENSRBIG00000028564	ENSRBIG00000024778	PDXK (ENSRBIG00000022396)	ENSRBIG00000032395	RRP1 (ENSRBIG00000032082) #21	AGPAT3 (ENSRBIG00000029812) #22	TRAPPC10 (ENSRBIG00000029157) #23	PWP2 (ENSRBIG00000034365) #24	GATD3 (ENSRBIG00000040907)	ICOSLG (ENSRBIG00000042775) #25	DNMT3L (ENSRBIG00000029101) #26	AIRE (ENSRBIG00000034675) #27	PFKL (ENSRBIG00000024591) #28	CFAP410 (ENSRBIG00000036434) #29	TRPM2 (ENSRBIG00000042457) #30	LRRC3 (ENSRBIG00000013619) #31	ENSRBIG00000013411	KRTAP10-2 (ENSRBIG00000029279)	ENSRBIG00000039496	ENSRBIG00000029901	ENSRBIG00000040008
Golden snub-nosed monkey	MODERN SPECIES	1362									HSF2BP (ENSRROG00000032823) #19	RRP1B (ENSRROG00000031499) #20	PDXK (ENSRROG00000044416)	ENSRROG00000030459	ENSRROG00000042411	CSTB (ENSRROG00000038574)	RRP1 (ENSRROG00000039799) #21	AGPAT3 (ENSRROG00000031040) #22	ENSRROG00000032758	TRAPPC10 (ENSRROG00000043895) #23	PWP2 (ENSRROG00000031946) #24	GATD3 (ENSRROG00000034542)
Cercopithecinae	ANCESTRAL SPECIES	23	ENSGT00390000012196 #13	ENSGT01000000215029	ENSGT00940000159505.x #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a.ge #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826.nb.a.b	ENSGT00860000135708	ENSGT00940000154826.ob	ENSGT00390000011821.b #21	ENSGT01020000234487	ENSGT00950000182836.b.b.b.a #22	ENSGT00910000147401	ENSGT00390000003873 #23	ENSGT00900000140979.a.a.`b.a.o.a	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000158193	ENSGT00950000182895.a.b.j.b
Cercopithecinae_a	ANCESTRAL SPECIES	22	ENSGT00390000012196 #13	ENSGT01000000215029.c	ENSGT00940000159505.x #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a.ge #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00910000147350	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00860000135708	ENSGT00940000154826.ob	ENSGT00390000011821.b #21	ENSGT01020000234487	ENSGT00950000182836.b.b.b.a #22	ENSGT00910000147401	ENSGT00390000003873 #23	ENSGT00900000140979.a.a.`b.a.o.a	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000158579.l.a	ENSGT00940000163845.c
Macaca	ANCESTRAL SPECIES	3	ENSGT01000000215029.c	ENSGT00940000159505.x #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a.ge #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00910000147350	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826.ob	ENSGT00860000135708	ENSGT00940000154826.nb.b	ENSGT00390000011821.b #21	ENSGT01020000234487	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00940000158579.l.a	ENSGT00940000158579.l.b.b.a.e	ENSGT00510000047718 #32	ENSGT00940000158579.l.b.a	ENSGT00940000163845.c
Pig-tailed macaque	MODERN SPECIES	503	WDR4 (ENSMNEG00000033682) #12	NDUFV3 (ENSMNEG00000031842) #13	ERVH48-1 (ENSMNEG00000016913)	PKNOX1 (ENSMNEG00000035609) #14	CBS (ENSMNEG00000039488) #15	U2AF1 (ENSMNEG00000030283) #16	CRYAA (ENSMNEG00000005656) #17	SIK1 (ENSMNEG00000033778) #18	ENSMNEG00000025872	HSF2BP (ENSMNEG00000038532) #19	RRP1B (ENSMNEG00000034269) #20	ENSMNEG00000041372	PDXK (ENSMNEG00000045284)	CSTB (ENSMNEG00000029992)	RRP1 (ENSMNEG00000031210) #21	AGPAT3 (ENSMNEG00000033756) #22	TRAPPC10 (ENSMNEG00000033526) #23	PWP2 (ENSMNEG00000030782) #24	GATD3 (ENSMNEG00000038785)	ICOSLG (ENSMNEG00000029638) #25	DNMT3L (ENSMNEG00000042190) #26	AIRE (ENSMNEG00000011508) #27	PFKL (ENSMNEG00000032421) #28	CFAP410 (ENSMNEG00000034463) #29	TRPM2 (ENSMNEG00000027827) #30	LRRC3 (ENSMNEG00000021603) #31	ENSMNEG00000040527	ENSMNEG00000033060	ENSMNEG00000030729	ENSMNEG00000036953	ENSMNEG00000037098
Macaca_a	ANCESTRAL SPECIES	22	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT01000000215029.c	ENSGT00940000159505.x #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a.ge #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00910000147350	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826.ob	ENSGT00390000011821.b #21	ENSGT01020000234487	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00940000163845.d	ENSGT00940000158579.l.b.b.a.e	ENSGT00940000158579.l.b.a	ENSGT00940000163258.i.b	ENSGT00940000164049.b.a
Rhesus	MODERN SPECIES	13	SLC37A1 (ENSMMUG00000018085) #10	PDE9A (ENSMMUG00000022107) #11	WDR4 (ENSMMUG00000062729) #12	NDUFV3 (ENSMMUG00000001553) #13	ENSMMUG00000044879	PKNOX1 (ENSMMUG00000009288) #14	CBS (ENSMMUG00000009289) #15	U2AF1 (ENSMMUG00000022769) #16	CRYAA (ENSMMUG00000020271) #17	SIK1 (ENSMMUG00000020050) #18	HSF2BP (ENSMMUG00000022791) #19	RRP1B (ENSMMUG00000000104) #20	PDXK (ENSMMUG00000062457)	CSTB (ENSMMUG00000012303)	RRP1 (ENSMMUG00000012304) #21	AGPAT3 (ENSMMUG00000045179) #22	TRAPPC10 (ENSMMUG00000005269) #23	PWP2 (ENSMMUG00000005271) #24	GATD3 (ENSMMUG00000005272)	ICOSLG (ENSMMUG00000010647) #25	DNMT3L (ENSMMUG00000010648) #26	AIRE (ENSMMUG00000004168) #27	PFKL (ENSMMUG00000004173) #28	CFAP410 (ENSMMUG00000049578) #29	TRPM2 (ENSMMUG00000004175) #30	LRRC3 (ENSMMUG00000049755) #31	KRTAP10-10 (ENSMMUG00000022559)	ENSMMUG00000022558	ENSMMUG00000030497	KRTAP10-8 (ENSMMUG00000048049)	KRTAP10-9 (ENSMMUG00000043221)
Crab-eating macaque	MODERN SPECIES	13	ENSMFAG00000051957	PKNOX1 (ENSMFAG00000039213) #14	ENSMFAG00000063594	CBS (ENSMFAG00000038794) #15	ENSMFAG00000032317 #16	CRYAA (ENSMFAG00000036551) #17	SIK1 (ENSMFAG00000032324) #18	ENSMFAG00000063691	HSF2BP (ENSMFAG00000041607) #19	RRP1B (ENSMFAG00000039152) #20	ENSMFAG00000056006	PDXK (ENSMFAG00000042485)	CSTB (ENSMFAG00000061351)	RRP1 (ENSMFAG00000003202) #21	ENSMFAG00000057571	ENSMFAG00000053688 #22	TRAPPC10 (ENSMFAG00000041704) #23	PWP2 (ENSMFAG00000044448) #24	GATD3 (ENSMFAG00000046334)	ICOSLG (ENSMFAG00000040533) #25	DNMT3L (ENSMFAG00000046145) #26	AIRE (ENSMFAG00000001488) #27	PFKL (ENSMFAG00000037062) #28	CFAP410 (ENSMFAG00000049270) #29	TRPM2 (ENSMFAG00000001773) #30	LRRC3 (ENSMFAG00000028969) #31	KRTAP10-4 (ENSMFAG00000031679)	KRTAP10-9 (ENSMFAG00000053657)	KRTAP10-7 (ENSMFAG00000051280)	TSPEAR (ENSMFAG00000001348) #32	UBE2G2 (ENSMFAG00000057431)
Cercopithecinae_b	ANCESTRAL SPECIES	29	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT01000000215029.c	ENSGT00940000159505.x #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a.ge #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00910000147350	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00860000135708	ENSGT00940000154826.ob	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00910000147401	ENSGT00390000003873 #23	ENSGT00900000140979.a.a.`b.a.o.a	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000158579.l.a	ENSGT00940000158579.l.b.a
Cercopithecinae_d	ANCESTRAL SPECIES	36	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT01000000215029.c	ENSGT00940000159505.x #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a.ge #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00910000147350	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00860000135708	ENSGT00940000154826.ob	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00910000147401	ENSGT00390000003873 #23	ENSGT00900000140979.a.a.`b.a.o.a	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000158579.l.b.a	ENSGT00940000158579.l.b.b.a.f
Drill	MODERN SPECIES	1420	WDR4 (ENSMLEG00000042177) #12	NDUFV3 (ENSMLEG00000042871) #13	ERVH48-1 (ENSMLEG00000001600)	PKNOX1 (ENSMLEG00000037117) #14	CBS (ENSMLEG00000041980) #15	ENSMLEG00000029446 #16	CRYAA (ENSMLEG00000039416) #17	SIK1 (ENSMLEG00000030826) #18	ENSMLEG00000034490	HSF2BP (ENSMLEG00000042323) #19	RRP1B (ENSMLEG00000040044) #20	ENSMLEG00000002822	PDXK (ENSMLEG00000015398)	ENSMLEG00000031224	RRP1 (ENSMLEG00000037797) #21	AGPAT3 (ENSMLEG00000033816) #22	ENSMLEG00000026219	TRAPPC10 (ENSMLEG00000027219) #23	PWP2 (ENSMLEG00000039860) #24	GATD3 (ENSMLEG00000027477)	ICOSLG (ENSMLEG00000043829) #25	DNMT3L (ENSMLEG00000041399) #26	AIRE (ENSMLEG00000026732) #27	PFKL (ENSMLEG00000030281) #28	CFAP410 (ENSMLEG00000038505) #29	TRPM2 (ENSMLEG00000009280) #30	LRRC3 (ENSMLEG00000001984) #31	ENSMLEG00000040298	ENSMLEG00000031061	TSPEAR (ENSMLEG00000035979) #32	ENSMLEG00000034784
Sooty mangabey	MODERN SPECIES	465	PDE9A (ENSCATG00000039788) #11	WDR4 (ENSCATG00000042955) #12	NDUFV3 (ENSCATG00000043099) #13	ERVH48-1 (ENSCATG00000032142)	PKNOX1 (ENSCATG00000033829) #14	CBS (ENSCATG00000037956) #15	ENSCATG00000044934 #16	CRYAA (ENSCATG00000044220) #17	SIK1 (ENSCATG00000037666) #18	ENSCATG00000015361	HSF2BP (ENSCATG00000041814) #19	RRP1B (ENSCATG00000017423) #20	PDXK (ENSCATG00000037302)	ENSCATG00000042137	RRP1 (ENSCATG00000015632) #21	AGPAT3 (ENSCATG00000027955) #22	ENSCATG00000034946	TRAPPC10 (ENSCATG00000014984) #23	ENSCATG00000037979	PWP2 (ENSCATG00000032550) #24	GATD3 (ENSCATG00000021742)	ICOSLG (ENSCATG00000023031) #25	DNMT3L (ENSCATG00000034363) #26	AIRE (ENSCATG00000034405) #27	PFKL (ENSCATG00000038502) #28	CFAP410 (ENSCATG00000040484) #29	TRPM2 (ENSCATG00000034197) #30	LRRC3 (ENSCATG00000017064) #31	TSPEAR (ENSCATG00000034984) #32	ENSCATG00000041458	ENSCATG00000041080
Vervet Monkey	MODERN SPECIES	11	SLC37A1 (ENSCSAG00000008088) #10	ENSCSAG00000008076	PDE9A (ENSCSAG00000008068) #11	WDR4 (ENSCSAG00000008058) #12	NDUFV3 (ENSCSAG00000008049) #13	PKNOX1 (ENSCSAG00000008042) #14	CBS (ENSCSAG00000008036) #15	U2AF1 (ENSCSAG00000008019) #16	CRYAA (ENSCSAG00000007988) #17	SIK1 (ENSCSAG00000007979) #18	HSF2BP (ENSCSAG00000007970) #19	RRP1B (ENSCSAG00000007961) #20	PDXK (ENSCSAG00000007949)	ENSCSAG00000007941	RRP1 (ENSCSAG00000007936) #21	AGPAT3 (ENSCSAG00000007926) #22	TRAPPC10 (ENSCSAG00000007920) #23	PWP2 (ENSCSAG00000007903) #24	GATD3 (ENSCSAG00000007892)	ENSCSAG00000007887	ICOSLG (ENSCSAG00000007876) #25	DNMT3L (ENSCSAG00000007863) #26	AIRE (ENSCSAG00000007836) #27	PFKL (ENSCSAG00000007817) #28	CFAP410 (ENSCSAG00000007805) #29	TRPM2 (ENSCSAG00000007727) #30	LRRC3 (ENSCSAG00000000277) #31	TSPEAR (ENSCSAG00000007591) #32	ENSCSAG00000007568	KRTAP10-3 (ENSCSAG00000007561)	KRTAP10-4 (ENSCSAG00000007551)
Hominoidea	ANCESTRAL SPECIES	26	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT01000000215029	ENSGT00940000159505.x #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00860000135708	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT01020000234487	ENSGT00950000182836.b.b.b.a #22	ENSGT00910000147401	ENSGT00390000003873 #23	ENSGT00900000140979.a.a.`b.a.o.a	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000163258.j	ENSGT00940000158579.l.b.b.b
Hominidae	ANCESTRAL SPECIES	25	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT01000000215029	ENSGT00940000159505.x #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000167184	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT01020000234487	ENSGT00950000182836.b.b.b.a #22	ENSGT00910000147401	ENSGT00390000003873 #23	ENSGT00900000140979.a.a.`b.a.o.a	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000158579.l.b.b.a.d	ENSGT00940000163258.j
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	27	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT01000000215029	ENSGT00940000159505.x #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000167184	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT01020000234487	ENSGT00950000182836.b.b.b.a #22	ENSGT00910000147401	ENSGT00390000003873 #23	ENSGT00900000140979.a.a.`b.a.o.a	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000158579.l.b.b.a.d	ENSGT00940000163258.j
Gorilla	MODERN SPECIES	12	SLC37A1 (ENSGGOG00000012067) #10	PDE9A (ENSGGOG00000014263) #11	WDR4 (ENSGGOG00000016652) #12	NDUFV3 (ENSGGOG00000014547) #13	ERVH48-1 (ENSGGOG00000037204)	PKNOX1 (ENSGGOG00000013783) #14	CBS (ENSGGOG00000010251) #15	ENSGGOG00000038883	CRYAA (ENSGGOG00000010345) #17	SIK1 (ENSGGOG00000007792) #18	HSF2BP (ENSGGOG00000012059) #19	RRP1B (ENSGGOG00000012069) #20	PDXK (ENSGGOG00000003904)	CSTB (ENSGGOG00000024406)	RRP1 (ENSGGOG00000000173) #21	AGPAT3 (ENSGGOG00000043336) #22	ENSGGOG00000044032	TRAPPC10 (ENSGGOG00000010716) #23	PWP2 (ENSGGOG00000041875) #24	GATD3 (ENSGGOG00000041897)	ENSGGOG00000012425 #25	DNMT3L (ENSGGOG00000012431) #26	AIRE (ENSGGOG00000005672) #27	PFKL (ENSGGOG00000005687) #28	ENSGGOG00000005702 #29	TRPM2 (ENSGGOG00000008410) #30	LRRC3 (ENSGGOG00000008435) #31	TSPEAR (ENSGGOG00000002047) #32	ENSGGOG00000039833	ENSGGOG00000040198	KRTAP10-7 (ENSGGOG00000044027)
Homo/Pan group	ANCESTRAL SPECIES	26	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT01000000215029	ENSGT00940000159505.x #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000167184	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT01020000234487	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00900000140979.a.a.`b.a.o.a	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000158579.l.a	ENSGT00940000158579.l.b.b.a.c	ENSGT00940000164049.b.b
Pan	ANCESTRAL SPECIES	27	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT01000000215029	ENSGT00940000159505.x #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000167184	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00900000140979.a.a.`b.a.o.a	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000158579.l.a	ENSGT00940000163845.c	ENSGT00940000158579.l.b.b.a.c
Chimpanzee	MODERN SPECIES	12	PDE9A (ENSPTRG00000013946) #11	WDR4 (ENSPTRG00000013948) #12	NDUFV3 (ENSPTRG00000047245) #13	ERVH48-1 (ENSPTRG00000051369)	PKNOX1 (ENSPTRG00000013950) #14	CBS (ENSPTRG00000013951) #15	ENSPTRG00000013952 #16	ENSPTRG00000044914	CRYAA (ENSPTRG00000013953) #17	SIK1 (ENSPTRG00000013954) #18	HSF2BP (ENSPTRG00000013957) #19	RRP1B (ENSPTRG00000013958) #20	PDXK (ENSPTRG00000040962)	CSTB (ENSPTRG00000048077)	RRP1 (ENSPTRG00000013962) #21	AGPAT3 (ENSPTRG00000042805) #22	TRAPPC10 (ENSPTRG00000013968) #23	ENSPTRG00000048335	PWP2 (ENSPTRG00000013969) #24	GATD3 (ENSPTRG00000047816)	ENSPTRG00000013972 #25	DNMT3L (ENSPTRG00000013973) #26	AIRE (ENSPTRG00000013974) #27	PFKL (ENSPTRG00000022972) #28	CFAP410 (ENSPTRG00000013976) #29	TRPM2 (ENSPTRG00000013977) #30	LRRC3 (ENSPTRG00000013978) #31	TSPEAR (ENSPTRG00000013980) #32	KRTAP10-2 (ENSPTRG00000013982)	ENSPTRG00000046656	KRTAP10-5 (ENSPTRG00000031415)
Bonobo	MODERN SPECIES	12	PDE9A (ENSPPAG00000027576) #11	WDR4 (ENSPPAG00000038150) #12	NDUFV3 (ENSPPAG00000016184) #13	ERVH48-1 (ENSPPAG00000006329)	PKNOX1 (ENSPPAG00000027586) #14	CBS (ENSPPAG00000042865) #15	U2AF1 (ENSPPAG00000000845) #16	ENSPPAG00000026875	CRYAA (ENSPPAG00000034607) #17	SIK1 (ENSPPAG00000034814) #18	HSF2BP (ENSPPAG00000034999) #19	RRP1B (ENSPPAG00000035319) #20	PDXK (ENSPPAG00000020347)	ENSPPAG00000028631	RRP1 (ENSPPAG00000029050) #21	AGPAT3 (ENSPPAG00000029344) #22	TRAPPC10 (ENSPPAG00000030751) #23	ENSPPAG00000035184	PWP2 (ENSPPAG00000037874) #24	GATD3 (ENSPPAG00000030535)	ENSPPAG00000036658 #25	DNMT3L (ENSPPAG00000041935) #26	AIRE (ENSPPAG00000018145) #27	PFKL (ENSPPAG00000028154) #28	ENSPPAG00000033399 #29	TRPM2 (ENSPPAG00000036474) #30	LRRC3 (ENSPPAG00000006087) #31	TSPEAR (ENSPPAG00000027981) #32	ENSPPAG00000029414	ENSPPAG00000029990	ENSPPAG00000030230
Human	MODERN SPECIES	13	PDE9A (ENSG00000160191) #11	WDR4 (ENSG00000160193) #12	NDUFV3 (ENSG00000160194) #13	ERVH48-1 (ENSG00000233056)	PKNOX1 (ENSG00000160199) #14	CBS (ENSG00000160200) #15	U2AF1 (ENSG00000160201) #16	CRYAA (ENSG00000160202) #17	SIK1 (ENSG00000142178) #18	HSF2BP (ENSG00000160207) #19	H2BC12L (ENSG00000234289)	RRP1B (ENSG00000160208) #20	PDXK (ENSG00000160209)	CSTB (ENSG00000160213)	RRP1 (ENSG00000160214) #21	AGPAT3 (ENSG00000160216) #22	ENSG00000288593	TRAPPC10 (ENSG00000160218) #23	PWP2 (ENSG00000241945) #24	GATD3 (ENSG00000160221)	ICOSLG (ENSG00000160223) #25	DNMT3L (ENSG00000142182) #26	AIRE (ENSG00000160224) #27	PFKL (ENSG00000141959) #28	CFAP410 (ENSG00000160226) #29	TRPM2 (ENSG00000142185) #30	LRRC3 (ENSG00000160233) #31	TSPEAR (ENSG00000175894) #32	KRTAP10-1 (ENSG00000215455)	KRTAP10-2 (ENSG00000205445)	KRTAP10-3 (ENSG00000212935)
Orangutan	MODERN SPECIES	12	NDUFV3 (ENSPPYG00000011459) #13	ERVH48-1 (ENSPPYG00000032563)	PKNOX1 (ENSPPYG00000011461) #14	ENSPPYG00000041500	CBS (ENSPPYG00000011462) #15	U2AF1 (ENSPPYG00000011463) #16	ENSPPYG00000040498	ENSPPYG00000011465 #17	SIK1 (ENSPPYG00000011466) #18	ENSPPYG00000011469 #19	RRP1B (ENSPPYG00000011470) #20	PDXK (ENSPPYG00000019998)	CSTB (ENSPPYG00000036267)	RRP1 (ENSPPYG00000011474) #21	ENSPPYG00000034644	AGPAT3 (ENSPPYG00000011476) #22	ENSPPYG00000036566	TRAPPC10 (ENSPPYG00000011477) #23	PWP2 (ENSPPYG00000011478) #24	ENSPPYG00000011479	ICOSLG (ENSPPYG00000011481) #25	DNMT3L (ENSPPYG00000035139) #26	AIRE (ENSPPYG00000011482) #27	PFKL (ENSPPYG00000011483) #28	ENSPPYG00000041331 #29	TRPM2 (ENSPPYG00000011485) #30	LRRC3 (ENSPPYG00000011486) #31	TSPEAR (ENSPPYG00000011488) #32	KRTAP10-3 (ENSPPYG00000037806)	ENSPPYG00000039780	KRTAP10-5 (ENSPPYG00000011492)
Gibbon	MODERN SPECIES	17	NDUFV3 (ENSNLEG00000014663) #13	ERVH48-1 (ENSNLEG00000027799)	PKNOX1 (ENSNLEG00000014675) #14	CBS (ENSNLEG00000029685) #15	U2AF1 (ENSNLEG00000030710) #16	ENSNLEG00000033479	CRYAA (ENSNLEG00000014752) #17	SIK1 (ENSNLEG00000001409) #18	HSF2BP (ENSNLEG00000034577) #19	RRP1B (ENSNLEG00000001490) #20	PDXK (ENSNLEG00000001565)	ENSNLEG00000028797	ENSNLEG00000001583	RRP1 (ENSNLEG00000034734) #21	ENSNLEG00000033631	AGPAT3 (ENSNLEG00000001755) #22	TRAPPC10 (ENSNLEG00000001820) #23	ENSNLEG00000029247	PWP2 (ENSNLEG00000001928) #24	GATD3 (ENSNLEG00000033634)	ENSNLEG00000033148 #25	DNMT3L (ENSNLEG00000002093) #26	ENSNLEG00000027646 #27	PFKL (ENSNLEG00000002171) #28	ENSNLEG00000002219 #29	ENSNLEG00000002224 #30	TSPEAR (ENSNLEG00000002263) #32	KRTAP10-2 (ENSNLEG00000027209)	KRTAP10-3 (ENSNLEG00000026713)	ENSNLEG00000027551	KRTAP10-5 (ENSNLEG00000026989)
Tarsier	MODERN SPECIES	4156																AGPAT3 (ENSTSYG00000013680) #22	TRAPPC10 (ENSTSYG00000009018) #23	PWP2 (ENSTSYG00000009022) #24	GATD3 (ENSTSYG00000013874)
Strepsirrhini	ANCESTRAL SPECIES	1	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505.x #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000164049	ENSGT00940000163527	ENSGT00940000158579	ENSGT00940000163258	ENSGT00940000163441.f.a.a.a	ENSGT00940000154360.A.b #31
Lemuriformes	ANCESTRAL SPECIES	9	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505.x #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000163527.a	ENSGT00940000158579	ENSGT00940000163258	ENSGT00940000163441.f.a.a.a	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32
Lemuriformes_a	ANCESTRAL SPECIES	183											ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000163527.a	ENSGT00940000158579	ENSGT00940000163258	ENSGT00940000163441.f.a.a.a	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32
Coquerels sifaka	MODERN SPECIES	860																ENSPCOG00000017034 #22	TRAPPC10 (ENSPCOG00000023846) #23	PWP2 (ENSPCOG00000012856) #24	GATD3 (ENSPCOG00000007721)	ICOSLG (ENSPCOG00000022096) #25	DNMT3L (ENSPCOG00000022179) #26	AIRE (ENSPCOG00000025712) #27	PFKL (ENSPCOG00000008346) #28	CFAP410 (ENSPCOG00000015158) #29	TRPM2 (ENSPCOG00000000159) #30	ENSPCOG00000015036	ENSPCOG00000020643	TSPEAR (ENSPCOG00000019364) #32	ENSPCOG00000012194	ENSPCOG00000017762	ENSPCOG00000020795
Greater bamboo lemur	MODERN SPECIES	618										HSF2BP (ENSPSMG00000000840) #19	RRP1B (ENSPSMG00000000878) #20	PDXK (ENSPSMG00000000981)	CSTB (ENSPSMG00000001087)	RRP1 (ENSPSMG00000001127) #21	ENSPSMG00000001142	AGPAT3 (ENSPSMG00000001184) #22	ENSPSMG00000001203	TRAPPC10 (ENSPSMG00000001308) #23	PWP2 (ENSPSMG00000001395) #24	ENSPSMG00000001422	ICOSLG (ENSPSMG00000001460) #25	DNMT3L (ENSPSMG00000001478) #26	AIRE (ENSPSMG00000001491) #27	PFKL (ENSPSMG00000001565) #28	TRPM2 (ENSPSMG00000001756) #30	LRRC3 (ENSPSMG00000001980) #31	TSPEAR (ENSPSMG00000002016) #32	ENSPSMG00000002079	ENSPSMG00000002099	ENSPSMG00000002110
Mouse lemur	MODERN SPECIES	24	PDE9A (ENSMICG00000016258) #11	WDR4 (ENSMICG00000042106) #12	NDUFV3 (ENSMICG00000046617) #13	PKNOX1 (ENSMICG00000037878) #14	CBS (ENSMICG00000041663) #15	U2AF1 (ENSMICG00000013835) #16	CRYAA (ENSMICG00000035380) #17	ENSMICG00000035845	ENSMICG00000029407	SIK1 (ENSMICG00000000552) #18	HSF2BP (ENSMICG00000004680) #19	RRP1B (ENSMICG00000004686) #20	PDXK (ENSMICG00000004696)	CSTB (ENSMICG00000031601)	RRP1 (ENSMICG00000004700) #21	AGPAT3 (ENSMICG00000047320) #22	TRAPPC10 (ENSMICG00000000992) #23	PWP2 (ENSMICG00000001002) #24	GATD3 (ENSMICG00000001007)	ICOSLG (ENSMICG00000001250) #25	DNMT3L (ENSMICG00000048144) #26	AIRE (ENSMICG00000034908) #27	ENSMICG00000046893	PFKL (ENSMICG00000035233) #28	CFAP410 (ENSMICG00000026921) #29	TRPM2 (ENSMICG00000012499) #30	TSPEAR (ENSMICG00000009957) #32	BACE2 (ENSMICG00000027643)	FAM3B (ENSMICG00000012335)	MX2 (ENSMICG00000012345)	MX1 (ENSMICG00000017322)
Bushbaby	MODERN SPECIES	243	SLC37A1 (ENSOGAG00000015740) #10	PDE9A (ENSOGAG00000015745) #11	WDR4 (ENSOGAG00000003658) #12	ENSOGAG00000003661 #13	PKNOX1 (ENSOGAG00000003664) #14	CBS (ENSOGAG00000016500) #15	ENSOGAG00000032959	ENSOGAG00000016504 #16	CRYAA (ENSOGAG00000016506) #17	SIK1 (ENSOGAG00000000860) #18	HSF2BP (ENSOGAG00000009866) #19	RRP1B (ENSOGAG00000009872) #20	PDXK (ENSOGAG00000006093)	CSTB (ENSOGAG00000006101)	RRP1 (ENSOGAG00000006105) #21	AGPAT3 (ENSOGAG00000003775) #22	TRAPPC10 (ENSOGAG00000012463) #23	PWP2 (ENSOGAG00000012473) #24	GATD3 (ENSOGAG00000012480)	ICOSLG (ENSOGAG00000015366) #25	DNMT3L (ENSOGAG00000015368) #26	AIRE (ENSOGAG00000010769) #27	PFKL (ENSOGAG00000027753) #28	CFAP410 (ENSOGAG00000003170) #29	TRPM2 (ENSOGAG00000014398) #30	LRRC3 (ENSOGAG00000013776) #31	TSPEAR (ENSOGAG00000003682) #32	ENSOGAG00000034456	ENSOGAG00000033488	ENSOGAG00000012063	SUMO3 (ENSOGAG00000004715)
Laurasiatheria	ANCESTRAL SPECIES	2	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT01020000234487	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00940000163845	ENSGT00510000047718 #32	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977
Laurasiatheria_a	ANCESTRAL SPECIES	3	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT01020000234487	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00940000163845	ENSGT00510000047718 #32	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977
Laurasiatheria_b	ANCESTRAL SPECIES	2	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00940000163845	ENSGT00510000047718 #32	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977
Carnivora	ANCESTRAL SPECIES	10	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000163441.f.a.a.b	ENSGT00940000163441.f.b.a.a	ENSGT00940000155183 #37	ENSGT00940000158193
Caniformia	ANCESTRAL SPECIES		ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000163441.f.a.a.b	ENSGT00940000163441.f.b.a.a.b	ENSGT00940000163441.f.b.a.a.a	ENSGT00940000155183.a #37
Canidae	ANCESTRAL SPECIES	39	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977	ENSGT01090000259987.a.a.a.i
Canis_lupus	ANCESTRAL SPECIES	38	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00940000163122	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000161526.a.d ##36	ENSGT00940000161526.a.c ##36	ENSGT00940000163441.f.a.a.b.a	ENSGT00940000158193
Dog	MODERN SPECIES	24	RSPH1 (ENSCAFG00845016424) #9	SLC37A1 (ENSCAFG00845016674) #10	ENSCAFG00845016845 #11	WDR4 (ENSCAFG00845016943) #12	ENSCAFG00845017044 #14	CBS (ENSCAFG00845017169) #15	U2AF1 (ENSCAFG00845017455) #16	CRYAA (ENSCAFG00845017570) #17	SIK1 (ENSCAFG00845017641) #18	HSF2BP (ENSCAFG00845017775) #19	ENSCAFG00845017980	RRP1B (ENSCAFG00845018066) #20	PDXK (ENSCAFG00845018299)	CSTB (ENSCAFG00845018589)	RRP1 (ENSCAFG00845018662) #21	AGPAT3 (ENSCAFG00845018820) #22	ENSCAFG00845018890	TRAPPC10 (ENSCAFG00845018939) #23	PWP2 (ENSCAFG00845019135) #24	GATD3 (ENSCAFG00845019382)	ICOSLG (ENSCAFG00845019541) #25	DNMT3L (ENSCAFG00845019683) #26	AIRE (ENSCAFG00845019838) #27	PFKL (ENSCAFG00845020069) #28	ICOSLG (ENSCAFG00845020326) #29	TRPM2 (ENSCAFG00845020419) #30	TSPEAR (ENSCAFG00845020761) #32	ENSCAFG00845020843	ENSCAFG00845021000	ENSCAFG00845021169 ##36	ENSCAFG00845021222
Dingo	MODERN SPECIES	63	PDE9A (ENSCAFG00020018526) #11	WDR4 (ENSCAFG00020018728) #12	NDUFV3 (ENSCAFG00020018747) #13	PKNOX1 (ENSCAFG00020018749) #14	ENSCAFG00020018761 #15	ENSCAFG00020018802 #15	U2AF1 (ENSCAFG00020018861) #16	CRYAA (ENSCAFG00020018863) #17	SIK1 (ENSCAFG00020018879) #18	HSF2BP (ENSCAFG00020018893) #19	ENSCAFG00020018896	RRP1B (ENSCAFG00020018901) #20	PDXK (ENSCAFG00020018948)	CSTB (ENSCAFG00020018974)	RRP1 (ENSCAFG00020018979) #21	AGPAT3 (ENSCAFG00020018995) #22	TRAPPC10 (ENSCAFG00020019017) #23	PWP2 (ENSCAFG00020019199) #24	GATD3 (ENSCAFG00020019216)	ICOSLG (ENSCAFG00020019220) #25	ENSCAFG00020019221 #26	AIRE (ENSCAFG00020019230) #27	PFKL (ENSCAFG00020019252) #28	CFAP410 (ENSCAFG00020019259) #29	TRPM2 (ENSCAFG00020019262) #30	LRRC3 (ENSCAFG00020019276) #31	TSPEAR (ENSCAFG00020019277) #32	ENSCAFG00020019289	ENSCAFG00020019303 #37	ENSCAFG00020019310	ENSCAFG00020019341
Red fox	MODERN SPECIES	209										ENSVVUG00000024523	HSF2BP (ENSVVUG00000024511) #19	RRP1B (ENSVVUG00000024509) #20	PDXK (ENSVVUG00000024507)	CSTB (ENSVVUG00000024503)	ENSVVUG00000024498 #21	AGPAT3 (ENSVVUG00000024491) #22	TRAPPC10 (ENSVVUG00000024489) #23	PWP2 (ENSVVUG00000024125) #24	GATD3 (ENSVVUG00000024083)	ICOSLG (ENSVVUG00000024076) #25	ENSVVUG00000024071 #26	AIRE (ENSVVUG00000024053) #27	PFKL (ENSVVUG00000024044) #28	CFAP410 (ENSVVUG00000024040) #29	ENSVVUG00000024038 #30	ENSVVUG00000024028 #30	LRRC3 (ENSVVUG00000024026) #31	ENSVVUG00000024023	ENSVVUG00000023984	ENSVVUG00000023974	ENSVVUG00000023958
Caniformia_b	ANCESTRAL SPECIES		ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977	ENSGT01090000259987.a.a.a
Ursidae	ANCESTRAL SPECIES	1	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a.cb	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000163441.f.b.a.a.b	ENSGT00940000163441.f.b.a.a.a.c	ENSGT00940000161526.a.a ##36	ENSGT00940000158193
Ursus	ANCESTRAL SPECIES	94	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a.cb	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000159292.a #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000163441.f.a.a.b	ENSGT00940000161526.a.a ##36	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977
American black bear	MODERN SPECIES	4384																AGPAT3 (ENSUAMG00000016789) #22
Polar bear	MODERN SPECIES	394	UBASH3A (ENSUMAG00000025543) #8	RSPH1 (ENSUMAG00000025542) #9	SLC37A1 (ENSUMAG00000025541) #10	PDE9A (ENSUMAG00000025540) #11	WDR4 (ENSUMAG00000025539) #12	NDUFV3 (ENSUMAG00000025538) #13	PKNOX1 (ENSUMAG00000025537) #14	CBS (ENSUMAG00000025527) #15	U2AF1 (ENSUMAG00000025525) #16	CRYAA (ENSUMAG00000025524) #17	SIK1 (ENSUMAG00000025514) #18	HSF2BP (ENSUMAG00000025511) #19	RRP1B (ENSUMAG00000025510) #20	PDXK (ENSUMAG00000025509)	RRP1 (ENSUMAG00000025507) #21	AGPAT3 (ENSUMAG00000025506) #22	TRAPPC10 (ENSUMAG00000025503) #23	PWP2 (ENSUMAG00000025481) #24	GATD3 (ENSUMAG00000025476)	ICOSLG (ENSUMAG00000025473) #25	ENSUMAG00000025471 #26	PFKL (ENSUMAG00000025470) #28	ENSUMAG00000025469 #29	TRPM2 (ENSUMAG00000025428) #30	LRRC3 (ENSUMAG00000025427) #31	TSPEAR (ENSUMAG00000025426) #32	ENSUMAG00000025425	ENSUMAG00000025423	ENSUMAG00000025422 #36	ENSUMAG00000025421 ##36	UBE2G2 (ENSUMAG00000025420)
Giant Panda	MODERN SPECIES		UBASH3A (ENSAMEG00000001955) #8	ENSAMEG00000001940 #9	SLC37A1 (ENSAMEG00000001892) #10	PDE9A (ENSAMEG00000001848) #11	WDR4 (ENSAMEG00000001823) #12	NDUFV3 (ENSAMEG00000001819) #13	PKNOX1 (ENSAMEG00000001778) #14	ENSAMEG00000001765 #15	ENSAMEG00000000149 #18	HSF2BP (ENSAMEG00000011388) #19	RRP1B (ENSAMEG00000011401) #20	PDXK (ENSAMEG00000011430)	CSTB (ENSAMEG00000011447)	RRP1 (ENSAMEG00000011448) #21	ENSAMEG00000023579	AGPAT3 (ENSAMEG00000010987) #22	TRAPPC10 (ENSAMEG00000010970) #23	PWP2 (ENSAMEG00000010907) #24	GATD3 (ENSAMEG00000010894)	ENSAMEG00000010883 #25	ENSAMEG00000010872 #26	AIRE (ENSAMEG00000010859) #27	PFKL (ENSAMEG00000010751) #28	CFAP410 (ENSAMEG00000010739) #29	TRPM2 (ENSAMEG00000010610) #30	ENSAMEG00000025346 #32	ENSAMEG00000031142	ENSAMEG00000029366	ENSAMEG00000028544	ENSAMEG00000031221 #37	ENSAMEG00000028758 #37
Mustelinae	ANCESTRAL SPECIES	67	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977	ENSGT01090000259987.a.a.a
American mink	MODERN SPECIES	122	RSPH1 (ENSNVIG00000005890) #9	SLC37A1 (ENSNVIG00000005945) #10	PDE9A (ENSNVIG00000006007) #11	WDR4 (ENSNVIG00000006026) #12	ENSNVIG00000006056 #13	PKNX1 (ENSNVIG00000006069) #14	CBS (ENSNVIG00000006101) #15	U2AF1 (ENSNVIG00000006310) #16	CRYAA (ENSNVIG00000006345) #17	SIK1 (ENSNVIG00000006387) #18	HSF2BP (ENSNVIG00000006866) #19	RRP1B (ENSNVIG00000006928) #20	PDXK (ENSNVIG00000006971)	CSTB (ENSNVIG00000007044)	RRP1 (ENSNVIG00000007054) #21	AGPAT3 (ENSNVIG00000007070) #22	TRAPPC10 (ENSNVIG00000007089) #23	PWP2 (ENSNVIG00000007096) #24	GATD3 (ENSNVIG00000007184)	ICOSLG (ENSNVIG00000007190) #25	ENSNVIG00000007199 #26	AIRE (ENSNVIG00000007211) #27	PFKL (ENSNVIG00000007397) #28	ENSNVIG00000007455 #29	TRPM2 (ENSNVIG00000007475) #30	LRRC3 (ENSNVIG00000007665) #31	TSPEAR (ENSNVIG00000007674) #32	ENSNVIG00000007725	ENSNVIG00000007773	ENSNVIG00000007785 ##36	UBE2G2 (ENSNVIG00000007799)
Ferret	MODERN SPECIES	248	PDE9A (ENSMPUG00000009433) #11	WDR4 (ENSMPUG00000009605) #12	ENSMPUG00000009667 #13	PKNOX1 (ENSMPUG00000009673) #14	CBS (ENSMPUG00000009689) #15	U2AF1 (ENSMPUG00000009706) #16	CRYAA (ENSMPUG00000009713) #17	SIK1 (ENSMPUG00000009719) #18	ENSMPUG00000009768	HSF2BP (ENSMPUG00000009772) #19	RRP1B (ENSMPUG00000009810) #20	ENSMPUG00000019064	CSTB (ENSMPUG00000009819)	RRP1 (ENSMPUG00000009826) #21	ENSMPUG00000019065	AGPAT3 (ENSMPUG00000009918) #22	TRAPPC10 (ENSMPUG00000009927) #23	PWP2 (ENSMPUG00000009936) #24	GATD3 (ENSMPUG00000009943)	ICOSLG (ENSMPUG00000009996) #25	DNMT3L (ENSMPUG00000010003) #26	ENSMPUG00000010029	AIRE (ENSMPUG00000010031) #27	PFKL (ENSMPUG00000010091) #28	CFAP410 (ENSMPUG00000010108) #29	TRPM2 (ENSMPUG00000010155) #30	LRRC3 (ENSMPUG00000019066) #31	TSPEAR (ENSMPUG00000010176) #32	ENSMPUG00000019067	UBE2G2 (ENSMPUG00000010187)	ENSMPUG00000010234
Felidae	ANCESTRAL SPECIES	9	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000163441.f.b.a.a.c	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977
Panthera	ANCESTRAL SPECIES	17	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000163441.f.b.a.a.c	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977
Panthera_a	ANCESTRAL SPECIES	63	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32
lion	MODERN SPECIES	148															RRP1 (ENSPLOG00000017909) #21	AGPAT3 (ENSPLOG00000018245) #22	TRAPPC10 (ENSPLOG00000018286) #23	PWP2 (ENSPLOG00000018391) #24	ENSPLOG00000018453	ENSPLOG00000018616 #25	DNMT3L (ENSPLOG00000018643) #26	AIRE (ENSPLOG00000018848) #27	PFKL (ENSPLOG00000018958) #28	CFAP410 (ENSPLOG00000019187) #29	TRPM2 (ENSPLOG00000019220) #30	LRRC3 (ENSPLOG00000019285) #31
leopard	MODERN SPECIES	148	RSPH1 (ENSPPRG00000008318) #9	SLC37A1 (ENSPPRG00000008368) #10	PDE9A (ENSPPRG00000008728) #11	WDR4 (ENSPPRG00000008824) #12	ENSPPRG00000008831 #13	PKNOX1 (ENSPPRG00000008876) #14	CBS (ENSPPRG00000009520) #15	U2AF1 (ENSPPRG00000009721) #16	CRYAA (ENSPPRG00000009838) #17	SIK1 (ENSPPRG00000010102) #18	HSF2BP (ENSPPRG00000010297) #19	RRP1B (ENSPPRG00000010356) #20	PDXK (ENSPPRG00000010569)	CSTB (ENSPPRG00000010619)	RRP1 (ENSPPRG00000010656) #21	AGPAT3 (ENSPPRG00000010943) #22	TRAPPC10 (ENSPPRG00000010959) #23	PWP2 (ENSPPRG00000011088) #24	GATD3 (ENSPPRG00000011216)	ICOSLG (ENSPPRG00000011258) #25	DNMT3L (ENSPPRG00000011340) #26	AIRE (ENSPPRG00000011376) #27	PFKL (ENSPPRG00000011485) #28	CFAP410 (ENSPPRG00000011592) #29	TRPM2 (ENSPPRG00000011778) #30	LRRC3 (ENSPPRG00000012330) #31	TSPEAR (ENSPPRG00000011892) #32
Cat	MODERN SPECIES	240	RSPH1 (ENSFCAG00000012707) #9	SLC37A1 (ENSFCAG00000012708) #10	PDE9A (ENSFCAG00000003965) #11	WDR4 (ENSFCAG00000003966) #12	NDUFV3 (ENSFCAG00000046775) #13	PKNOX1 (ENSFCAG00000042914) #14	CBS (ENSFCAG00000003969) #15	U2AF1 (ENSFCAG00000003970) #16	CRYAA (ENSFCAG00000000224) #17	SIK1 (ENSFCAG00000000225) #18	HSF2BP (ENSFCAG00000043141) #19	RRP1B (ENSFCAG00000010272) #20	PDXK (ENSFCAG00000008432)	ENSFCAG00000040822	RRP1 (ENSFCAG00000008434) #21	AGPAT3 (ENSFCAG00000008438) #22	TRAPPC10 (ENSFCAG00000008440) #23	PWP2 (ENSFCAG00000004487) #24	ENSFCAG00000011959	ENSFCAG00000048289	ICOSLG (ENSFCAG00000006687) #25	ENSFCAG00000000739 #26	AIRE (ENSFCAG00000007933) #27	PFKL (ENSFCAG00000003311) #28	CFAP410 (ENSFCAG00000040115) #29	TRPM2 (ENSFCAG00000009173) #30	LRRC3 (ENSFCAG00000009174) #31	ENSFCAG00000037433	ENSFCAG00000034182	ENSFCAG00000046465	ENSFCAG00000037983
Laurasiatheria_c	ANCESTRAL SPECIES	2	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00940000163845	ENSGT00510000047718 #32	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977
Chiroptera	ANCESTRAL SPECIES	35	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000163441.f.b.b	ENSGT00940000163441.f.a.a.b	ENSGT00940000158193	ENSGT00950000182895.a.b.j
Megabat	MODERN SPECIES	1683																AGPAT3 (ENSPVAG00000002310) #22	TRAPPC10 (ENSPVAG00000002311) #23	PWP2 (ENSPVAG00000002312) #24	GATD3 (ENSPVAG00000002313)
Microchiroptera	ANCESTRAL SPECIES	37	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000163441.f.b.b	ENSGT00940000163441.f.a.a.b	ENSGT00940000158193	ENSGT00950000182895.a.b.j
Microbat	MODERN SPECIES	1228													ENSMLUG00000030154	ENSMLUG00000022457	RRP1 (ENSMLUG00000017788) #21	AGPAT3 (ENSMLUG00000004785) #22	TRAPPC10 (ENSMLUG00000004810) #23	PWP2 (ENSMLUG00000004823) #24	GATD3 (ENSMLUG00000004837)	DNMT3L (ENSMLUG00000013954) #26	ENSMLUG00000010968 #27	PFKL (ENSMLUG00000010992) #28	CFAP410 (ENSMLUG00000011059) #29	TRPM2 (ENSMLUG00000011096) #30	LRRC3 (ENSMLUG00000011171) #31	TSPEAR (ENSMLUG00000011225) #32	ENSMLUG00000017019	ENSMLUG00000010897	ENSMLUG00000011524	UBE2G2 (ENSMLUG00000011264)	ENSMLUG00000028601
Greater horseshoe bat	MODERN SPECIES	11	RSPH1 (ENSRFEG00010004627) #9	SLC37A1 (ENSRFEG00010004677) #10	PDE9A (ENSRFEG00010004823) #11	WDR4 (ENSRFEG00010004938) #12	NDUFV3 (ENSRFEG00010004952) #13	PKNOX1 (ENSRFEG00010000147) #14	CBS (ENSRFEG00010000170) #15	U2AF1 (ENSRFEG00010000191) #16	CRYAA (ENSRFEG00010000206) #17	SIK1 (ENSRFEG00010000222) #18	HSF2BP (ENSRFEG00010000255) #19	RRP1B (ENSRFEG00010000288) #20	PDXK (ENSRFEG00010000337)	CSTB (ENSRFEG00010000380)	RRP1 (ENSRFEG00010000411) #21	AGPAT3 (ENSRFEG00010000500) #22	TRAPPC10 (ENSRFEG00010000559) #23	PWP2 (ENSRFEG00010000602) #24	GATD3 (ENSRFEG00010000628)	ICOSLG (ENSRFEG00010000645) #25	DNMT3L (ENSRFEG00010000669) #26	AIRE (ENSRFEG00010000735) #27	PFKL (ENSRFEG00010000776) #28	CFAP410 (ENSRFEG00010000827) #29	TRPM2 (ENSRFEG00010000872) #30	LRRC3 (ENSRFEG00010000940) #31	TSPEAR (ENSRFEG00010000980) #32	ENSRFEG00010001026	ENSRFEG00010001114	ENSRFEG00010001158	UBE2G2 (ENSRFEG00010001187)
Equus	ANCESTRAL SPECIES	42	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027.h #15	ENSGT00950000183152.B.c.a #16	ENSGT00510000047027.g #15	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826.xb	ENSGT00940000154826.yb	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00940000163845	ENSGT00510000047718 #32	ENSGT00940000158193	ENSGT00950000182895.a.b.j
Horse	MODERN SPECIES	18	PDE9A (ENSECAG00000017519) #11	WDR4 (ENSECAG00000019212) #12	NDUFV3 (ENSECAG00000003055) #13	PKNOX1 (ENSECAG00000010284) #14	ENSECAG00000046444	ENSECAG00000022794 #15	U2AF1 (ENSECAG00000015558) #16	ENSECAG00000021749 #15	SIK1 (ENSECAG00000006288) #18	HSF2BP (ENSECAG00000017282) #19	RRP1B (ENSECAG00000018018) #20	PDXK (ENSECAG00000022301)	ENSECAG00000034000	ENSECAG00000032188	RRP1 (ENSECAG00000015703) #21	AGPAT3 (ENSECAG00000022861) #22	TRAPPC10 (ENSECAG00000015123) #23	PWP2 (ENSECAG00000006090) #24	ENSECAG00000051827 #25	DNMT3L (ENSECAG00000009690) #26	AIRE (ENSECAG00000012924) #27	PFKL (ENSECAG00000017863) #28	TRPM2 (ENSECAG00000023430) #30	TSPEAR (ENSECAG00000008057) #29	LRRC3 (ENSECAG00000005082) #31	TSPEAR (ENSECAG00000051756) #32	ENSECAG00000029396	ENSECAG00000051909	ENSECAG00000051879	ENSECAG00000015117 #36	ENSECAG00000047135 #36
Donkey	MODERN SPECIES	9	WDR4 (ENSEASG00005003766) #12	NDUFV3 (ENSEASG00005003763) #13	ENSEASG00005038023 #15	ENSEASG00005038681	PKNOX1 (ENSEASG00005003760) #14	ENSEASG00005001773 #16	ENSEASG00005034585 #15	ENSEASG00005037746 #17	SIK1 (ENSEASG00005001719) #18	HSF2BP (ENSEASG00005001700) #19	RRP1B (ENSEASG00005001687) #20	PDXK (ENSEASG00005001679)	ENSEASG00005030216	ENSEASG00005032279	RRP1 (ENSEASG00005001673) #21	AGPAT3 (ENSEASG00005001667) #22	ENSEASG00005001663	TRAPPC10 (ENSEASG00005001657) #23	PWP2 (ENSEASG00005001651) #24	GATD3 (ENSEASG00005001648)	ENSEASG00005001644 #25	DNMT3L (ENSEASG00005001632) #26	AIRE (ENSEASG00005001620) #27	PFKL (ENSEASG00005001615) #28	CFAP410 (ENSEASG00005001598) #29	TRPM2 (ENSEASG00005000375) #30	ENSEASG00005035707 #31	ENSEASG00005033364	ENSEASG00005026527	ENSEASG00005037300 #36	ENSEASG00005014722 #36
Artiodactyla	ANCESTRAL SPECIES	2	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT01020000234487	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977	ENSGT01090000259987.a.a.a
Artiodactyla_a	ANCESTRAL SPECIES	8	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977	ENSGT01090000259987.a.a.a
Artiodactyla_b	ANCESTRAL SPECIES	6	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977	ENSGT01090000259987.a.a.a
Cetacea	ANCESTRAL SPECIES	10	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196.a #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874.k	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977	ENSGT01090000259987.a.a.a
Odontoceti	ANCESTRAL SPECIES	9	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196.a #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874.k	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977	ENSGT01090000259987.a.a.a
Odontoceti_a	ANCESTRAL SPECIES	8	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196.a #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874.k	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977	ENSGT01090000259987.a.a.a
Odontoceti_b	ANCESTRAL SPECIES	9	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196.a #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874.k	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977	ENSGT01090000259987.a.a.a
Monodontidae	ANCESTRAL SPECIES	11	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196.a #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00940000163089.a.b	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874.k	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977	ENSGT01090000259987.a.a.a
Beluga whale	MODERN SPECIES	111	SLC37A1 (ENSDLEG00000021092) #10	PDE9A (ENSDLEG00000021086) #11	WDR4 (ENSDLEG00000021081) #12	NDUFV3 (ENSDLEG00000021078) #13	PKNOX1 (ENSDLEG00000021076) #14	CBS (ENSDLEG00000021070) #15	U2AF1 (ENSDLEG00000021062) #16	CRYAA (ENSDLEG00000021056) #17	SIK1 (ENSDLEG00000021047) #18	ENSDLEG00000021045	HSF2BP (ENSDLEG00000021043) #19	RRP1B (ENSDLEG00000021037) #20	PDXK (ENSDLEG00000021031)	CSTB (ENSDLEG00000021029)	RRP1 (ENSDLEG00000021024) #21	AGPAT3 (ENSDLEG00000021021) #22	TRAPPC10 (ENSDLEG00000021015) #23	PWP2 (ENSDLEG00000021005) #24	GATD3 (ENSDLEG00000021000)	ICOSLG (ENSDLEG00000020998) #25	ENSDLEG00000020995 #26	AIRE (ENSDLEG00000020961) #27	PFKL (ENSDLEG00000020945) #28	CUNH21orf2 (ENSDLEG00000020939) #29	TRPM2 (ENSDLEG00000020923) #30	LRRC3 (ENSDLEG00000020917) #31	TSPEAR (ENSDLEG00000020913) #32	UBE2G2 (ENSDLEG00000020904)	ENSDLEG00000020900	PTTG1IP (ENSDLEG00000020895)	ITGB2 (ENSDLEG00000020885)
Narwhal	MODERN SPECIES	297	SLC37A1 (ENSMMNG00015002910) #10	PDE9A (ENSMMNG00015002827) #11	WDR4 (ENSMMNG00015002775) #12	NDUFV3 (ENSMMNG00015002750) #13	PKNOX1 (ENSMMNG00015002718) #14	CBS (ENSMMNG00015002675) #15	U2AF1 (ENSMMNG00015002628) #16	CRYAA (ENSMMNG00015002603) #17	SIK1 (ENSMMNG00015002567) #18	ENSMMNG00015002545	HSF2BP (ENSMMNG00015002511) #19	RRP1B (ENSMMNG00015002462) #20	PDXK (ENSMMNG00015002424)	CSTB (ENSMMNG00015002400)	RRP1 (ENSMMNG00015002366) #21	AGPAT3 (ENSMMNG00015002330) #22	TRAPPC10 (ENSMMNG00015002229) #23	PWP2 (ENSMMNG00015002118) #24	ENSMMNG00015002030	ICOSLG (ENSMMNG00015001974) #25	DNMT3L (ENSMMNG00015001913) #26	AIRE (ENSMMNG00015001730) #27	PFKL (ENSMMNG00015001526) #28	CFAP410 (ENSMMNG00015001497) #29	TRPM2 (ENSMMNG00015001381) #30	TSPEAR (ENSMMNG00015001273) #32	UBE2G2 (ENSMMNG00015001235)	SUMO3 (ENSMMNG00015001196)	PTTG1IP (ENSMMNG00015001159)	ITGB2 (ENSMMNG00015001076)	SLX9 (ENSMMNG00015001036)
Vaquita	MODERN SPECIES	15	RSPH1 (ENSPSNG00000004899) #9	SLC37A1 (ENSPSNG00000004936) #10	PDE9A (ENSPSNG00000005243) #11	WDR4 (ENSPSNG00000005893) #12	NDUFV3 (ENSPSNG00000005932) #13	PKNOX1 (ENSPSNG00000006002) #14	CBS (ENSPSNG00000009906) #15	U2AF1 (ENSPSNG00000010054) #16	CRYAA (ENSPSNG00000010191) #17	SIK1 (ENSPSNG00000010236) #18	HSF2BP (ENSPSNG00000010294) #19	RRP1B (ENSPSNG00000010341) #20	ENSPSNG00000010404	ENSPSNG00000010486	RRP1 (ENSPSNG00000010522) #21	AGPAT3 (ENSPSNG00000010576) #22	TRAPPC10 (ENSPSNG00000010640) #23	PWP2 (ENSPSNG00000010734) #24	GATD3 (ENSPSNG00000010801)	ICOSLG (ENSPSNG00000010983) #25	DNMT3L (ENSPSNG00000011244) #26	AIRE (ENSPSNG00000011555) #27	PFKL (ENSPSNG00000012080) #28	CFAP410 (ENSPSNG00000012160) #29	TRPM2 (ENSPSNG00000012233) #30	LRRC3 (ENSPSNG00000012828) #31	TSPEAR (ENSPSNG00000012864) #32	UBE2G2 (ENSPSNG00000013185)	SUMO3 (ENSPSNG00000013255)	PTTG1IP (ENSPSNG00000013293)	ENSPSNG00000013374
Dolphin	MODERN SPECIES	1327													PDXK (ENSTTRG00000011152)	CSTB (ENSTTRG00000011158)	RRP1 (ENSTTRG00000011162) #21	AGPAT3 (ENSTTRG00000011171) #22
Sperm whale	MODERN SPECIES	19	TMPRSS3 (ENSPCTG00005008050) #7	UBASH3A (ENSPCTG00005008150) #8	RSPH1 (ENSPCTG00005008271) #9	SLC37A1 (ENSPCTG00005008374) #10	CBS (ENSPCTG00005008728) #15	PKNOX1 (ENSPCTG00005012441) #14	NDUFV3 (ENSPCTG00005012543) #13	WDR4 (ENSPCTG00005012622) #12	PDE9A (ENSPCTG00005012834) #11	HSF2BP (ENSPCTG00005014642) #19	RRP1B (ENSPCTG00005014769) #20	PDXK (ENSPCTG00005014904)	CSTB (ENSPCTG00005015015)	U2AF1 (ENSPCTG00005015178) #16	CRYAA (ENSPCTG00005015249) #17	AGPAT3 (ENSPCTG00005015313) #22	TRAPPC10 (ENSPCTG00005015440) #23	PWP2 (ENSPCTG00005015641) #24	GATD3A (ENSPCTG00005015921)	ICOSLG (ENSPCTG00005016088) #25	DNMT3L (ENSPCTG00005016240) #26	AIRE (ENSPCTG00005016581) #27	PFKL (ENSPCTG00005017230) #28	SUMO3 (ENSPCTG00005017367)	UBE2G2 (ENSPCTG00005017422)	TSPEAR (ENSPCTG00005017485) #32	ENSPCTG00005017543	ENSPCTG00005017608	LRRC3 (ENSPCTG00005017660) #31	ENSPCTG00005017676 #30	ENSPCTG00005017771 #30
Blue whale	MODERN SPECIES	15	PDE9A (ENSBMSG00010006135) #11	WDR4 (ENSBMSG00010006556) #12	ENSBMSG00010006574 #13	PKNOX1 (ENSBMSG00010006599) #14	ENSBMSG00010006616	CBS (ENSBMSG00010006633) #15	U2AF1 (ENSBMSG00010006667) #16	CRYAA (ENSBMSG00010006694) #17	SIK1 (ENSBMSG00010006706) #18	HSF2BP (ENSBMSG00010006728) #19	ENSBMSG00010006743	RRP1B (ENSBMSG00010006765) #20	ENSBMSG00010006807	ENSBMSG00010006834	RRP1 (ENSBMSG00010006842) #21	AGPAT3 (ENSBMSG00010006864) #22	TRAPPC10 (ENSBMSG00010006876) #23	PWP2 (ENSBMSG00010006911) #24	GATD3 (ENSBMSG00010006949)	ICOSLG (ENSBMSG00010006991) #25	DNMT3L (ENSBMSG00010007028) #26	AIRE (ENSBMSG00010007103) #27	PFKL (ENSBMSG00010007189) #28	CFAP410 (ENSBMSG00010007203) #29	TRPM2 (ENSBMSG00010007233) #30	LRRC3 (ENSBMSG00010007273) #31	TSPEAR (ENSBMSG00010007281) #32	ENSBMSG00010007295	ENSBMSG00010007310	ENSBMSG00010007332 #36	UBE2G2 (ENSBMSG00010007343)
Pecora	ANCESTRAL SPECIES	8	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826.rb.b	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT01100000265026	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977
Percora_a	ANCESTRAL SPECIES	7	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826.rb.b	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT01100000265026	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977
Bovidae	ANCESTRAL SPECIES	9	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826.rb.b	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT01100000265026	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977
Caprinae	ANCESTRAL SPECIES	8	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826.rb.b	ENSGT00940000154826.rb.a.a	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00510000047493.n	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000163441.f.a.b.c.a.b.a.a.a.a	ENSGT00940000163441.f.a.b.c.a.b.a.b.a.b.b	ENSGT00940000163441.f.b.b.c.b
Goat	MODERN SPECIES		WDR4 (ENSCHIG00000022834) #12	ENSCHIG00000025996 #13	PKNOX1 (ENSCHIG00000019819) #14	CBS (ENSCHIG00000010679) #15	U2AF1 (ENSCHIG00000012917) #16	CRYAA (ENSCHIG00000025002) #17	SIK1 (ENSCHIG00000013044) #18	ENSCHIG00000019627	HSF2BP (ENSCHIG00000005444) #19	RRP1B (ENSCHIG00000021519) #20	PDXK (ENSCHIG00000008616)	ENSCHIG00000023504	ENSCHIG00000018248	RRP1 (ENSCHIG00000020948) #21	ENSCHIG00000024677	AGPAT3 (ENSCHIG00000018991) #22	TRAPPC10 (ENSCHIG00000027168) #23	PWP2 (ENSCHIG00000026362) #24	GATD3 (ENSCHIG00000012627)	ICOSLG (ENSCHIG00000013703) #25	DNMT3L (ENSCHIG00000026242) #26	AIRE (ENSCHIG00000017506) #27	ENSCHIG00000023257	CFAP410 (ENSCHIG00000026049) #29	ENSCHIG00000009692	TRPM2 (ENSCHIG00000017585) #30	LRRC3 (ENSCHIG00000009418) #31	TSPEAR (ENSCHIG00000017708) #32	ENSCHIG00000011548	ENSCHIG00000014533	ENSCHIG00000017373
Rambouillet Sheep	MODERN SPECIES		UBASH3A (ENSOARG00020003453) #8	RSPH1 (ENSOARG00020003566) #9	SLC37A1 (ENSOARG00020003631) #10	PDE9A (ENSOARG00020003783) #11	WDR4 (ENSOARG00020005224) #12	NDUFV3 (ENSOARG00020005254) #13	PKNOX1 (ENSOARG00020005292) #14	CBS (ENSOARG00020005385) #15	U2AF1 (ENSOARG00020005608) #16	CRYAA (ENSOARG00020005666) #17	SIK1 (ENSOARG00020005689) #18	HSF2BP (ENSOARG00020005745) #19	PDXK (ENSOARG00020005802)	CSTB (ENSOARG00020005932)	RRP1 (ENSOARG00020005964) #21	AGPAT3 (ENSOARG00020005985) #22	ENSOARG00020006019	TRAPPC10 (ENSOARG00020006030) #23	PWP2 (ENSOARG00020006076) #24	GATD3A (ENSOARG00020006120)	ICOSLG (ENSOARG00020006191) #25	DNMT3L (ENSOARG00020006260) #26	AIRE (ENSOARG00020006405) #27	PFKL (ENSOARG00020006870) #28	CFAP410 (ENSOARG00020014376) #29	ENSOARG00020014423	TRPM2 (ENSOARG00020014481) #30	LRRC3 (ENSOARG00020014996) #31	TSPEAR (ENSOARG00020015029) #32	ENSOARG00020015156	ENSOARG00020006471
Bovinae	ANCESTRAL SPECIES	6	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826.rb.b	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT01100000265026	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977
Bos	ANCESTRAL SPECIES	7	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826.rb.b	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT01100000265026	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000163441.f.a.b.c.a.b.a.b.a.b.a.b	ENSGT00940000163441.f.a.b.d	ENSGT00940000158193
Bos_a	ANCESTRAL SPECIES	5	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826.rb.b	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT01100000265026	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000163441.f.a.b.c.a.b.a.b.a.b.a.b	ENSGT00940000163441.f.a.b.c.b	ENSGT00960000187239.a
Domestic yak	MODERN SPECIES		RSPH1 (ENSBGRG00000018504) #9	SLC37A1 (ENSBGRG00000018757) #10	PDE9A (ENSBGRG00000019109) #11	WDR4 (ENSBGRG00000019836) #12	ENSBGRG00000019941 #13	PKNOX1 (ENSBGRG00000020052) #14	CBS (ENSBGRG00000020259) #15	U2AF1 (ENSBGRG00000020541) #16	CRYAA (ENSBGRG00000020662) #17	SIK1 (ENSBGRG00000020700) #18	HSF2BP (ENSBGRG00000020817) #19	RRP1B (ENSBGRG00000021030) #20	PDXK (ENSBGRG00000021296)	ENSBGRG00000021603	RRP1 (ENSBGRG00000021680) #21	AGPAT3 (ENSBGRG00000021804) #22	TRAPPC10 (ENSBGRG00000021882) #23	PWP2 (ENSBGRG00000022101) #24	ENSBGRG00000022271	ICOSLG (ENSBGRG00000022358) #25	DNMT3L (ENSBGRG00000022411) #26	AIRE (ENSBGRG00000022599) #27	ENSBGRG00000022818	PFKL (ENSBGRG00000022853) #28	CFAP410 (ENSBGRG00000023037) #29	TRPM2 (ENSBGRG00000023076) #30	LRRC3 (ENSBGRG00000023411) #31	TSPEAR (ENSBGRG00000023436) #32	ENSBGRG00000023540	ENSBGRG00000023556	ENSBGRG00000023571
Wild yak	MODERN SPECIES	2112	RSPH1 (ENSBMUG00000012341) #9	SLC37A1 (ENSBMUG00000012379) #10	PDE9A (ENSBMUG00000012397) #11	WDR4 (ENSBMUG00000012436) #12	ENSBMUG00000012491 #13	PKNOX1 (ENSBMUG00000012508) #14	CBS (ENSBMUG00000012649) #15	U2AF1 (ENSBMUG00000012755) #16	CRYAA (ENSBMUG00000012764) #17	SIK1 (ENSBMUG00000012772) #18	HSF2BP (ENSBMUG00000012808) #19	RRP1B (ENSBMUG00000012932) #20	PDXK (ENSBMUG00000013006)	ENSBMUG00000013071	RRP1 (ENSBMUG00000013086) #21	AGPAT3 (ENSBMUG00000013195) #22	TRAPPC10 (ENSBMUG00000013261) #23	PWP2 (ENSBMUG00000013296) #24	GATD3 (ENSBMUG00000013327)	ENSBMUG00000013354 #25	DNMT3L (ENSBMUG00000013391) #26	ENSBMUG00000013414	AIRE (ENSBMUG00000013435) #27	PFKL (ENSBMUG00000013472) #28	CFAP410 (ENSBMUG00000013489) #29	TRPM2 (ENSBMUG00000013655) #30	LRRC3 (ENSBMUG00000013743) #31
Bos_b	ANCESTRAL SPECIES	5	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826.rb.b	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT01100000265026	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000163441.f.b.b.c.a	ENSGT00940000163441.f.a.b.c.a.b.a.b.a.b.b	ENSGT00940000163441.f.b.b.c.b
Hybrid Bos Indicus	MODERN SPECIES		ENSBIXG00005021172	WDR4 (ENSBIXG00005007357) #12	ENSBIXG00005003567 #13	ENSBIXG00005021053	PKNOX1 (ENSBIXG00005021038) #14	CBS (ENSBIXG00005020947) #15	U2AF1 (ENSBIXG00005020822) #16	CRYAA (ENSBIXG00005020745) #17	ENSBIXG00005020712	SIK1 (ENSBIXG00005003495) #18	HSF2BP (ENSBIXG00005020613) #19	RRP1B (ENSBIXG00005020578) #20	PDXK (ENSBIXG00005020496)	ENSBIXG00005020433	RRP1 (ENSBIXG00005020372) #21	AGPAT3 (ENSBIXG00005020333) #22	TRAPPC10 (ENSBIXG00005003407) #23	PWP2 (ENSBIXG00005003368) #24	ENSBIXG00005020156	ICOSLG (ENSBIXG00005003278) #25	DNMT3L (ENSBIXG00005003270) #26	AIRE (ENSBIXG00005019950) #27	ENSBIXG00005019827	PFKL (ENSBIXG00005000029) #28	CFAP410 (ENSBIXG00005019772) #29	TRPM2 (ENSBIXG00005003229) #30	LRRC3 (ENSBIXG00005019626) #31	TSPEAR (ENSBIXG00005006878) #32	ENSBIXG00005019546	ENSBIXG00005019524	ENSBIXG00005019504
Cow	MODERN SPECIES		SLC37A1 (ENSBTAG00000021286) #10	PDE9A (ENSBTAG00000021899) #11	WDR4 (ENSBTAG00000021490) #12	NDUFV3 (ENSBTAG00000021491) #13	PKNOX1 (ENSBTAG00000014153) #14	CBS (ENSBTAG00000000160) #15	U2AF1 (ENSBTAG00000011645) #16	CRYAA (ENSBTAG00000003134) #17	SIK1 (ENSBTAG00000011437) #18	HSF2BP (ENSBTAG00000017407) #19	RRP1B (ENSBTAG00000017418) #20	PDXK (ENSBTAG00000018186)	CSTB (ENSBTAG00000018189)	CSTB (ENSBTAG00000000524)	RRP1 (ENSBTAG00000003981) #21	AGPAT3 (ENSBTAG00000020456) #22	TRAPPC10 (ENSBTAG00000007100) #23	PWP2 (ENSBTAG00000007105) #24	GATD3 (ENSBTAG00000007106)	ICOSLG (ENSBTAG00000014880) #25	DNMT3L (ENSBTAG00000014882) #26	AIRE (ENSBTAG00000023393) #27	ENSBTAG00000051579	PFKL (ENSBTAG00000010658) #28	CFAP410 (ENSBTAG00000019589) #29	TRPM2 (ENSBTAG00000021901) #30	LRRC3 (ENSBTAG00000017882) #31	TSPEAR (ENSBTAG00000018607) #32	ENSBTAG00000051900	ENSBTAG00000037662	ENSBTAG00000052773
American bison	MODERN SPECIES	2975	RSPH1 (ENSBBBG00000007983) #9	SLC37A1 (ENSBBBG00000014169) #10	PDE9A (ENSBBBG00000014410) #11	WDR4 (ENSBBBG00000014454) #12	NDUFV3 (ENSBBBG00000014463) #13	PKNOX1 (ENSBBBG00000003350) #14	CBS (ENSBBBG00000014597) #15	U2AF1 (ENSBBBG00000014640) #16	CRYAA (ENSBBBG00000014669) #17	SIK1 (ENSBBBG00000002847) #18	HSF2BP (ENSBBBG00000014691) #19	RRP1B (ENSBBBG00000003568) #20	PDXK (ENSBBBG00000003579)	CSTB (ENSBBBG00000007657)	RRP1 (ENSBBBG00000014788) #21	AGPAT3 (ENSBBBG00000003650) #22	TRAPPC10 (ENSBBBG00000007658) #23	PWP2 (ENSBBBG00000002805) #24	GATD3 (ENSBBBG00000014917)	ICOSLG (ENSBBBG00000001169) #25	DNMT3L (ENSBBBG00000001124) #26	AIRE (ENSBBBG00000000900) #27	PFKL (ENSBBBG00000000844) #28	CFAP410 (ENSBBBG00000000830) #29	TRPM2 (ENSBBBG00000015032) #30	LRRC3 (ENSBBBG00000003736) #31	ENSBBBG00000015050	ENSBBBG00000015056	ENSBBBG00000015061	ENSBBBG00000015080	ENSBBBG00000015083
Siberian musk deer	MODERN SPECIES	1185	SLC37A1 (ENSMMSG00000010340) #10	PDE9A (ENSMMSG00000010433) #11	ENSMMSG00000010748	WDR4 (ENSMMSG00000010788) #12	NDUFV3 (ENSMMSG00000010825) #13	PKNOX1 (ENSMMSG00000010868) #14	CBS (ENSMMSG00000010935) #15	U2AF1 (ENSMMSG00000011040) #16	CRYAA (ENSMMSG00000011127) #17	SIK1 (ENSMMSG00000011154) #18	HSF2BP (ENSMMSG00000011223) #19	RRP1B (ENSMMSG00000011269) #20	PDXK (ENSMMSG00000011339)	CSTB (ENSMMSG00000011422)	RRP1 (ENSMMSG00000011447) #21	AGPAT3 (ENSMMSG00000011502) #22	TRAPPC10 (ENSMMSG00000011550) #23	PWP2 (ENSMMSG00000011700) #24	GATD3 (ENSMMSG00000011811)	DNMT3L (ENSMMSG00000011908) #26	ENSMMSG00000012064	AIRE (ENSMMSG00000012088) #27	PFKL (ENSMMSG00000012144) #28	CFAP410 (ENSMMSG00000012203) #29	TRPM2 (ENSMMSG00000012263) #30	LRRC3 (ENSMMSG00000012592) #31	TSPEAR (ENSMMSG00000012606) #32	ENSMMSG00000012645	ENSMMSG00000012659	ENSMMSG00000012695 #36	ENSMMSG00000012713
Yarkand deer	MODERN SPECIES	10	RSPH1 (ENSCHYG00000008397) #9	SLC37A1 (ENSCHYG00000008438) #10	PDE9A (ENSCHYG00000008513) #11	WDR4 (ENSCHYG00000008871) #12	NDUFV3 (ENSCHYG00000008999) #13	PKNOX1 (ENSCHYG00000009096) #14	CBS (ENSCHYG00000009317) #15	ENSCHYG00000009600 #16	CRYAA (ENSCHYG00000009789) #17	SIK1 (ENSCHYG00000009832) #18	HSF2BP (ENSCHYG00000009993) #19	RRP1B (ENSCHYG00000010070) #20	PDXK (ENSCHYG00000010189)	ENSCHYG00000010380	RRP1 (ENSCHYG00000010447) #21	AGPAT3 (ENSCHYG00000010566) #22	TRAPPC10 (ENSCHYG00000010651) #23	PWP2 (ENSCHYG00000010992) #24	GATD3 (ENSCHYG00000011221)	ENSCHYG00000011375 #25	DNMT3L (ENSCHYG00000011454) #26	AIRE (ENSCHYG00000011590) #27	ENSCHYG00000011682	PFKL (ENSCHYG00000011737) #28	ENSCHYG00000012006 #29	TRPM2 (ENSCHYG00000012131) #30	LRRC3 (ENSCHYG00000012591) #31	TSPEAR (ENSCHYG00000012613) #32	ENSCHYG00000012689	ENSCHYG00000012727	ENSCHYG00000012743
Camelidae	ANCESTRAL SPECIES		ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000163441.f.a.a.b	ENSGT00940000163441.f.a.b.c.a.a	ENSGT00940000158193	ENSGT00950000182895.a.a.a.b.f
Arabian camel	MODERN SPECIES		SLC37A1 (ENSCDRG00005011351) #10	PDE9A (ENSCDRG00005011646) #11	WDR4 (ENSCDRG00005012149) #12	ENSCDRG00005012280 #13	PKNOX1 (ENSCDRG00005012370) #14	CBS (ENSCDRG00005012447) #15	U2AF1 (ENSCDRG00005012625) #16	CRYAA (ENSCDRG00005012871) #17	SIK1 (ENSCDRG00005012900) #18	HSF2BP (ENSCDRG00005013018) #19	RRP1B (ENSCDRG00005013083) #20	PDXK (ENSCDRG00005013153)	ENSCDRG00005013250	RRP1 (ENSCDRG00005013286) #21	ENSCDRG00005013354	AGPAT3 (ENSCDRG00005013408) #22	TRAPPC10 (ENSCDRG00005013577) #23	PWP2 (ENSCDRG00005013718) #24	GATD3 (ENSCDRG00005013830)	ENSCDRG00005014322 #25	DNMT3L (ENSCDRG00005014446) #26	AIRE (ENSCDRG00005014671) #27	PFKL (ENSCDRG00005015587) #28	CFAP410 (ENSCDRG00005021870) #29	TRPM2 (ENSCDRG00005021872) #30	LRRC3 (ENSCDRG00005021874) #31	TSPEAR (ENSCDRG00005021875) #32	ENSCDRG00005021877	ENSCDRG00005021878	UBE2G2 (ENSCDRG00005021880)	ENSCDRG00005021881
Suina	ANCESTRAL SPECIES	35	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490.m #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT01020000234487	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000163441.f.b.b	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977
Chacoan peccary	MODERN SPECIES	918										SIK1 (ENSCWAG00000021429) #18	HSF2BP (ENSCWAG00000021433) #19	RRP1B (ENSCWAG00000021439) #20	PDXK (ENSCWAG00000021452)	CSTB (ENSCWAG00000021465)	RRP1 (ENSCWAG00000021470) #21	AGPAT3 (ENSCWAG00000021478) #22	TRAPPC10 (ENSCWAG00000021486) #23	PWP2 (ENSCWAG00000021496) #24	GATD3 (ENSCWAG00000021510)	ICOSLG (ENSCWAG00000021521) #25	ENSCWAG00000021525 #26	AIRE (ENSCWAG00000021532) #27
Pig	MODERN SPECIES	4	PDE9A (ENSSSCG00000030016) #11	WDR4 (ENSSSCG00000023078) #12	ENSSSCG00000021991 #13	PKNOX1 (ENSSSCG00000037663) #14	CBS (ENSSSCG00000040779) #15	U2AF1 (ENSSSCG00000033653) #16	CRYAA (ENSSSCG00000038816) #17	SIK1 (ENSSSCG00000035037) #18	ENSSSCG00000045186	ENSSSCG00000022164 #19	RRP1B (ENSSSCG00000021698) #20	PDXK (ENSSSCG00000034758)	CSTB (ENSSSCG00000027357)	RRP1 (ENSSSCG00000037061) #21	ENSSSCG00000057666	AGPAT3 (ENSSSCG00000038081) #22	TRAPPC10 (ENSSSCG00000039085) #23	PWP2 (ENSSSCG00000029627) #24	GATD3 (ENSSSCG00000025525)	ENSSSCG00000022246 #25	DNMT3L (ENSSSCG00000028741) #26	AIRE (ENSSSCG00000025294) #27	PFKL (ENSSSCG00000028197) #28	CFAP410 (ENSSSCG00000024500) #29	TRPM2 (ENSSSCG00000023762) #30	LRRC3 (ENSSSCG00000053846) #31	TSPEAR (ENSSSCG00000022988) #32	ENSSSCG00000028768	ENSSSCG00000048449	ENSSSCG00000047309	ENSSSCG00000046681
Atlantogenata	ANCESTRAL SPECIES	92	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826.hb	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000163845	ENSGT00940000158579	ENSGT00940000158193	ENSGT00950000182895.a.b
Afrotheria	ANCESTRAL SPECIES	109	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826.hb	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000158579	ENSGT00940000158193	ENSGT00950000182895.a.b	ENSGT00390000004977
Afrotheria_a	ANCESTRAL SPECIES	115	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826.hb	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00940000161104 #27	ENSGT00940000159292 #28	ENSGT00390000018807 #29	ENSGT00940000156404 #30	ENSGT00940000154360.A.b #31	ENSGT00510000047718 #32	ENSGT00940000158579	ENSGT00940000158193	ENSGT00950000182895.a.b	ENSGT00390000004977
Elephant	MODERN SPECIES	513	SLC37A1 (ENSLAFG00000005842) #10	PDE9A (ENSLAFG00000028539) #11	WDR4 (ENSLAFG00000021675) #12	NDUFV3 (ENSLAFG00000002098) #13	PKNOX1 (ENSLAFG00000011377) #14	CBS (ENSLAFG00000009950) #15	U2AF1 (ENSLAFG00000011460) #16	CRYAA (ENSLAFG00000017392) #17	ENSLAFG00000031722	SIK1 (ENSLAFG00000000960) #18	HSF2BP (ENSLAFG00000000763) #19	RRP1B (ENSLAFG00000000766) #20	PDXK (ENSLAFG00000010740)	CSTB (ENSLAFG00000002664)	RRP1 (ENSLAFG00000022901) #21	AGPAT3 (ENSLAFG00000018615) #22	TRAPPC10 (ENSLAFG00000003863) #23	PWP2 (ENSLAFG00000003871) #24	GATD3 (ENSLAFG00000003876)	ENSLAFG00000016007 #25	DNMT3L (ENSLAFG00000031621) #26	AIRE (ENSLAFG00000008582) #27	PFKL (ENSLAFG00000021471) #28	CFAP410 (ENSLAFG00000000609) #29	TRPM2 (ENSLAFG00000007900) #30	LRRC3 (ENSLAFG00000005181) #31	TSPEAR (ENSLAFG00000012959) #32	ENSLAFG00000020961	ENSLAFG00000012968	ENSLAFG00000003471 #36	ENSLAFG00000032616
Hyrax	MODERN SPECIES	9053																AGPAT3 (ENSPCAG00000015260) #22
Tenrec	MODERN SPECIES	5135																AGPAT3 (ENSETEG00000000898) #22
Xenarthra	ANCESTRAL SPECIES	1177																ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a
Armadillo	MODERN SPECIES	4100																ENSDNOG00000038285 #22	TRAPPC10 (ENSDNOG00000012294) #23	PWP2 (ENSDNOG00000012128) #24	GATD3 (ENSDNOG00000024270)
Marsupialia	DUPLICATION
Marsupialia	ANCESTRAL SPECIES	23	ENSGT00940000160841 #8	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a.a #22	ENSGT00390000003873 #23	ENSGT00530000063946.a	ENSGT00940000155551	ENSGT00940000156294	ENSGT00940000153577.A	ENSGT00510000046499	ENSGT00940000159255	ENSGT00940000159602	ENSGT00940000159870	ENSGT00940000154497.A	ENSGT00390000010669	ENSGT01100000263796	ENSGT00940000154497.B	ENSGT00940000161679	ENSGT00390000014606
Marsupialia_b	ANCESTRAL SPECIES	3	ENSGT00940000160841 #8	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a.a #22	ENSGT00500000044950	ENSGT00940000156253	ENSGT00940000158923	ENSGT00950000183107.a.b.a	ENSGT00950000182802.D	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000160964	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00950000183004.a.b.a.b	ENSGT00940000155207.a.b	ENSGT00940000159908
Diprotodontia	ANCESTRAL SPECIES	32	ENSGT00940000160841 #8	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a.a #22	ENSGT00500000044950	ENSGT00940000156253	ENSGT00940000158923	ENSGT00950000183107.a.b.a	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000160964	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00950000183004.a.b.a.b	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00870000136508.c.b
Diprotodontia_a	ANCESTRAL SPECIES	31	ENSGT00940000160841 #8	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159.a #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821.a #20	ENSGT00390000003874	ENSGT00940000154826.bc	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a.a #22	ENSGT00500000044950	ENSGT00940000156253	ENSGT00940000158923	ENSGT00950000183107.a.b.a	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000160964.i	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00950000183004.a.b.a.b	ENSGT00940000155207.a.b	ENSGT00940000159908	ENSGT00870000136508.c.b
Common wonbat	MODERN SPECIES	1120	PDE9A (ENSVURG00010023297) #11	WDR4 (ENSVURG00010023283) #12	ENSVURG00010023279 #13	PKNOX1 (ENSVURG00010023276) #14	CBS (ENSVURG00010023271) #15	U2AF1 (ENSVURG00010023269) #16	ENSVURG00010023267 #17	SIK1 (ENSVURG00010023263) #18	ENSVURG00010023260	HSF2BP (ENSVURG00010023259) #19	RRP1B (ENSVURG00010023255) #20	ENSVURG00010023251	PDXK (ENSVURG00010023250)	ENSVURG00010023249	ENSVURG00010023247 #21	ENSVURG00010023246 #22	PSMG1 (ENSVURG00010023242)	GRIK1 (ENSVURG00010022936)	BACH1 (ENSVURG00010022808)	ENSVURG00010022806	BRWD1 (ENSVURG00010020972)	GET1 (ENSVURG00010020815)	LCA5L (ENSVURG00010020810)	SH3BGR (ENSVURG00010020806)	ENSVURG00010020804	ENSVURG00010020802	PCP4 (ENSVURG00010020798)	DSCAM (ENSVURG00010020750)	ENSVURG00010020735	BACE2 (ENSVURG00010020728)	FAM3B (ENSVURG00010020723)
koala	MODERN SPECIES	249	SLC37A1 (ENSPCIG00000003787) #10	PDE9A (ENSPCIG00000002353) #11	WDR4 (ENSPCIG00000002223) #12	ENSPCIG00000002205 #13	PKNOX1 (ENSPCIG00000007865) #14	CBS (ENSPCIG00000028095) #15	U2AF1 (ENSPCIG00000028098) #16	ENSPCIG00000028100 #17	ENSPCIG00000036347	SIK1 (ENSPCIG00000008860) #18	HSF2BP (ENSPCIG00000015503) #19	RRP1B (ENSPCIG00000015513) #20	PDXK (ENSPCIG00000015519)	ENSPCIG00000015522	ENSPCIG00000015523 #21	ENSPCIG00000028254 #22	PSMG1 (ENSPCIG00000028255)	GRIK1 (ENSPCIG00000028259)	BACH1 (ENSPCIG00000028263)	BRWD1 (ENSPCIG00000028266)	ENSPCIG00000033358	ENSPCIG00000028274	LCA5L (ENSPCIG00000028277)	SH3BGR (ENSPCIG00000028279)	ENSPCIG00000014296	ENSPCIG00000014298	PCP4 (ENSPCIG00000028281)	DSCAM (ENSPCIG00000028291)
Tasmanian devil	MODERN SPECIES	2	UBASH3A (ENSSHAG00000015152) #8	SLC37A1 (ENSSHAG00000015601) #10	PDE9A (ENSSHAG00000016254) #11	WDR4 (ENSSHAG00000016450) #12	ENSSHAG00000026320 #13	PKNOX1 (ENSSHAG00000016846) #14	CBS (ENSSHAG00000017100) #15	U2AF1 (ENSSHAG00000017185) #16	CRYAA (ENSSHAG00000017366) #17	SIK1 (ENSSHAG00000017494) #18	HSF2BP (ENSSHAG00000017635) #19	RRP1B (ENSSHAG00000017789) #20	PDXK (ENSSHAG00000017888)	CSTB (ENSSHAG00000025634)	ENSSHAG00000010304 #21	ENSSHAG00000008796 #22	ENSSHAG00000008206	ENSSHAG00000006972	ENSSHAG00000006419	ENSSHAG00000002554	ENSSHAG00000032232	GET1 (ENSSHAG00000024410)	LCA5L (ENSSHAG00000002464)	SH3BGR (ENSSHAG00000004155)	B3GALT5 (ENSSHAG00000026882)	PCP4 (ENSSHAG00000010796)	DSCAM (ENSSHAG00000009089)	BACE2 (ENSSHAG00000005092)	TMPRSS2 (ENSSHAG00000004952)	ENSSHAG00000001558	ENSSHAG00000002844
Opossum	MODERN SPECIES	3	ENSMODG00000021023 #10	PDE9A (ENSMODG00000025366) #11	WDR4 (ENSMODG00000021024) #12	ENSMODG00000021025 #13	PKNOX1 (ENSMODG00000021026) #14	CBS (ENSMODG00000021028) #15	U2AF1 (ENSMODG00000029158) #16	CRYAA (ENSMODG00000021030) #17	SIK1 (ENSMODG00000021031) #18	HSF2BP (ENSMODG00000021032) #19	RRP1B (ENSMODG00000021033) #20	ENSMODG00000037340	PDXK (ENSMODG00000021034)	CSTB (ENSMODG00000021035)	ENSMODG00000051346 #21	AGPAT3 (ENSMODG00000021037) #22	TRAPPC10 (ENSMODG00000021039) #23	SCAF4 (ENSMODG00000021040)	SOD1 (ENSMODG00000021041)	TIAM1 (ENSMODG00000021043)	ENSMODG00000050855	ENSMODG00000021047	SETD4 (ENSMODG00000021048)	RUNX1 (ENSMODG00000021051)	ENSMODG00000021052	ENSMODG00000041490	RCAN1 (ENSMODG00000021053)	KCNE1 (ENSMODG00000025354)	C21orf140 (ENSMODG00000025353)	ENSMODG00000046807	KCNE2 (ENSMODG00000025352)
Marsupialia	ANCESTRAL SPECIES																	ENSGT00950000182836.b.b.b.a.b #22
Marsupialia_b	ANCESTRAL SPECIES	10	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845	ENSGT00500000044921.b	ENSGT01100000263542.A	ENSGT00390000007888.b	ENSGT00940000157337	ENSGT00390000007888.a	ENSGT00420000029769.a	ENSGT00940000160695	ENSGT00940000155365.a.a	ENSGT00390000018904.yb	ENSGT00940000157537	ENSGT00950000182836.b.b.b.a.b #22	ENSGT00390000016277.a	ENSGT00390000012495	ENSGT00390000012832	ENSGT00940000159099	ENSGT00390000001827	ENSGT00390000008295.b	ENSGT00940000157911	ENSGT00510000048725	ENSGT00940000160520	ENSGT00390000003114.e.b.b	ENSGT00940000157880	ENSGT00940000155488	ENSGT00940000158391	ENSGT00940000157527	ENSGT00940000157131.b
Diprotodontia	ANCESTRAL SPECIES	18	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845	ENSGT00500000044921.b	ENSGT01100000263542.A	ENSGT00390000007888.b	ENSGT00940000157337	ENSGT00390000007888.a	ENSGT00420000029769.a	ENSGT00940000160695	ENSGT00940000155365.a.a	ENSGT00390000018904.yb	ENSGT00940000157537	ENSGT00950000182836.b.b.b.a.b #22	ENSGT00390000016277.a	ENSGT00390000012495	ENSGT00390000012832	ENSGT00940000159099	ENSGT00390000001827	ENSGT00390000008295.b	ENSGT00940000157911	ENSGT00510000048725	ENSGT00940000160520	ENSGT00390000003114.e.b.b	ENSGT00940000157880	ENSGT00940000155488	ENSGT00940000158391	ENSGT00940000157527	ENSGT00940000157131.b
Diprotodontia_a	ANCESTRAL SPECIES	20	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845	ENSGT00500000044921.b	ENSGT01100000263542.A	ENSGT00390000007888.b.b	ENSGT00940000157337	ENSGT00390000007888.a.a	ENSGT00420000029769.a	ENSGT00940000160695	ENSGT00940000155365.a.a	ENSGT00390000018904.yb	ENSGT00940000157537	ENSGT00950000182836.b.b.b.a.b #22	ENSGT00390000016277.a	ENSGT00390000012495	ENSGT00390000012832	ENSGT00940000159099	ENSGT00390000001827	ENSGT00390000008295.b	ENSGT00940000157911	ENSGT00510000048725	ENSGT00940000160520	ENSGT00390000003114.e.b.b	ENSGT00940000157880	ENSGT00940000155488	ENSGT00940000158391	ENSGT00940000157527	ENSGT00940000157131.b
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1036	ENSVURG00010018752	ENSVURG00010018740	ENSVURG00010018732	ENSVURG00010018714	ENSVURG00010018701	ENSVURG00010018692	ENSVURG00010018618	ENSVURG00010018602	ENSVURG00010018595	ENSVURG00010018588	ENSVURG00010018580	ENSVURG00010018578	ENSVURG00010018576	ENSVURG00010018570	ENSVURG00010018559	ENSVURG00010018548 #22	ENSVURG00010018541	ENSVURG00010018480	ENSVURG00010018470	ENSVURG00010018438	ENSVURG00010018418	ENSVURG00010018413	ENSVURG00010018408	ENSVURG00010018401	ENSVURG00010018394	ENSVURG00010018390	ENSVURG00010018369	ENSVURG00010017255	ENSVURG00010017145
Common wonbat	MODERN SPECIES	1036	ENSVURG00010023046	ENSVURG00010023039	ENSVURG00010023036	ENSVURG00010023031	ENSVURG00010023026	ENSVURG00010023021	ENSVURG00010023007	ENSVURG00010022994	ENSVURG00010022986	ENSVURG00010022980	ENSVURG00010022973	ENSVURG00010022965	ENSVURG00010022957	ENSVURG00010022950	ENSVURG00010022941	ENSVURG00010022932 #22	ENSVURG00010022923	ENSVURG00010022890	ENSVURG00010022880	ENSVURG00010022857	ENSVURG00010022841	ENSVURG00010022838	ENSVURG00010022835	ENSVURG00010022833	ENSVURG00010022827	ENSVURG00010022813	ENSVURG00010022605	ENSVURG00010022566	TGFBR2 (ENSVURG00010022559)	ENSVURG00010022557	RBMS3 (ENSVURG00010022551)
koala	MODERN SPECIES	50	SCRN1 (ENSPCIG00000019775)	FKBP14 (ENSPCIG00000006908)	PLEKHA8 (ENSPCIG00000022307)	MTURN (ENSPCIG00000022309)	ZNRF2 (ENSPCIG00000022316)	NOD1 (ENSPCIG00000006834)	GGCT (ENSPCIG00000037416)	ENSPCIG00000032473	ENTPD3 (ENSPCIG00000003518)	ENSPCIG00000010324	GASK1A (ENSPCIG00000004107)	POMGNT2 (ENSPCIG00000017784)	SNRK (ENSPCIG00000017788)	ANO10 (ENSPCIG00000017789)	ENSPCIG00000017791	ENSPCIG00000017793 #22	ABHD5 (ENSPCIG00000017796)	TOPAZ1 (ENSPCIG00000026161)	TCAIM (ENSPCIG00000026159)	TRIM71 (ENSPCIG00000026155)	CNOT10 (ENSPCIG00000026148)	DYNC1LI1 (ENSPCIG00000026143)	CMTM6 (ENSPCIG00000026142)	CMTM7 (ENSPCIG00000026140)	CMTM8 (ENSPCIG00000026139)	GPD1L (ENSPCIG00000026138)	OSBPL10 (ENSPCIG00000017992)	STT3B (ENSPCIG00000017991)	GADL1 (ENSPCIG00000017987)	TGFBR2 (ENSPCIG00000017985)	ENSPCIG00000006109
Wallaby	MODERN SPECIES	6476																AGPAT3 (ENSMEUG00000011503) #22
Tasmanian devil	MODERN SPECIES	4	ENSSHAG00000005324	SCRN1 (ENSSHAG00000004467)	FKBP14 (ENSSHAG00000029085)	PLEKHA8 (ENSSHAG00000002747)	MTURN (ENSSHAG00000023838)	ZNRF2 (ENSSHAG00000022515)	ENSSHAG00000028562	ENSSHAG00000027969	ENSSHAG00000021130	ENSSHAG00000001591	ENSSHAG00000027107	ENSSHAG00000023966	POMGNT2 (ENSSHAG00000003748)	SNRK (ENSSHAG00000018518)	ENSSHAG00000018357	ENSSHAG00000018334 #22	ENSSHAG00000031972	ENSSHAG00000030874	ENSSHAG00000017638	ENSSHAG00000017580	ENSSHAG00000021944	ENSSHAG00000017280	DYNC1LI1 (ENSSHAG00000017026)	ENSSHAG00000027248	CMTM7 (ENSSHAG00000032359)	CMTM8 (ENSSHAG00000016796)	GPD1L (ENSSHAG00000029429)	OSBPL10 (ENSSHAG00000015717)	STT3B (ENSSHAG00000015602)	GADL1 (ENSSHAG00000013123)	TGFBR2 (ENSSHAG00000020646)
Platypus	MODERN SPECIES	9	UBASH3A (ENSOANG00000006452) #8	RSPH1 (ENSOANG00000006454) #9	SLC37A1 (ENSOANG00000006455) #10	PDE9A (ENSOANG00000006458) #11	WDR4 (ENSOANG00000006459) #12	ENSOANG00000006460 #13	PKNOX1 (ENSOANG00000006461) #14	CBS (ENSOANG00000006462) #15	U2AF1 (ENSOANG00000006463) #16	CRYAA (ENSOANG00000006464) #17	SIK1 (ENSOANG00000006466) #18	HSF2BP (ENSOANG00000006469) #19	RRP1B (ENSOANG00000006470) #20	PDXK (ENSOANG00000006471)	ENSOANG00000041552 #21	AGPAT3 (ENSOANG00000006473) #22	ENSOANG00000042993 #23	ENSOANG00000045507 #23	PWP2 (ENSOANG00000006477) #24	GATD3 (ENSOANG00000006478)	ENSOANG00000046692 #25	ENSOANG00000049122	DIPK2B (ENSOANG00000051110)	ENSOANG00000006481	FUNDC1 (ENSOANG00000006482)	EFHC2 (ENSOANG00000006483)	NDP (ENSOANG00000040395)	MAOB (ENSOANG00000006486)	MAOA (ENSOANG00000006490)	CASK (ENSOANG00000011267)	GPR82 (ENSOANG00000011271)
Sauria	ANCESTRAL SPECIES	2	ENSGT00940000160841 #8	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027.n #15	ENSGT00510000047027.m #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821 #21	ENSGT00390000003874	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00520000055625.a	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00940000155600.b	ENSGT00990000203619.A.a	ENSGT01060000248589.C
Lepidosauria	ANCESTRAL SPECIES	4	ENSGT00940000160841 #8	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027.n #15	ENSGT00510000047027.m #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821 #21	ENSGT00390000003874	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00520000055625.a	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00940000155600.b	ENSGT00940000160782	ENSGT00940000154443
Episquamata	ANCESTRAL SPECIES	2	ENSGT00940000160841 #8	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027.n #15	ENSGT00510000047027.m #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821 #21	ENSGT00390000003874	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00520000055625.a	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT01060000248589.C	ENSGT00940000155600.b	ENSGT00940000160782
Laterata	ANCESTRAL SPECIES		ENSGT00940000160841 #8	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174.h #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027.n #15	ENSGT00510000047027.m #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821 #21	ENSGT00390000003874	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00520000055625.a	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00950000183055.a.b	ENSGT00530000063582.a	ENSGT01060000248589.C
Common wall lizard	MODERN SPECIES	12	SLC37A1 (ENSPMRG00000022118) #10	PDE9A (ENSPMRG00000022131) #11	ENSPMRG00000022158 #12	ENSPMRG00000022203 #13	PKNOX1 (ENSPMRG00000022216) #14	ENSPMRG00000022227 #15	CBS (ENSPMRG00000022240) #15	U2AF1 (ENSPMRG00000022258) #16	CRYAA (ENSPMRG00000022271) #17	SIK1 (ENSPMRG00000022275) #18	ENSPMRG00000022282	HSF2BP (ENSPMRG00000022285) #19	ENSPMRG00000022293 #21	PDXK (ENSPMRG00000022302)	ENSPMRG00000022309	AGPAT3 (ENSPMRG00000022311) #22	TRAPPC10 (ENSPMRG00000022319) #23	PWP2 (ENSPMRG00000022333) #24	GATD3 (ENSPMRG00000022343)	ICOSLG (ENSPMRG00000003355) #25	DNMT3L (ENSPMRG00000003361) #26	ENSPMRG00000003367	ENSPMRG00000003373	DIPK2B (ENSPMRG00000003381)	ENSPMRG00000003409	ENSPMRG00000003527	FUNDC1 (ENSPMRG00000003536)	EFHC2 (ENSPMRG00000003549)	ENSPMRG00000003579	ENSPMRG00000003590	MAOA (ENSPMRG00000003608)
Argentine black and white tegu	MODERN SPECIES		UBASH3A (ENSSMRG00000022921) #8	RSPH1 (ENSSMRG00000022920) #9	SLC37A1 (ENSSMRG00000022919) #10	PDE9A (ENSSMRG00000022917) #11	ENSSMRG00000022916 #13	WDR4 (ENSSMRG00000022915) #12	PKNOX1 (ENSSMRG00000022914) #14	ENSSMRG00000022913 #15	CBS (ENSSMRG00000022912) #15	U2AF1 (ENSSMRG00000022911) #16	CRYAA (ENSSMRG00000022910) #17	SIK1 (ENSSMRG00000022909) #18	HSF2BP (ENSSMRG00000022908) #19	ENSSMRG00000022907 #21	PDXK (ENSSMRG00000022905)	AGPAT3 (ENSSMRG00000022903) #22	TRAPPC10 (ENSSMRG00000022902) #23	PWP2 (ENSSMRG00000022901) #24	GATD3 (ENSSMRG00000022900)	ICOSLG (ENSSMRG00000022899) #25	DNMT3L (ENSSMRG00000022898) #26	DIPK2B (ENSSMRG00000022892)	ENSSMRG00000022891	FUNDC1 (ENSSMRG00000022890)	EFHC2 (ENSSMRG00000022889)	ENSSMRG00000022888	ENSSMRG00000022887	MAOA (ENSSMRG00000022886)	GPR34 (ENSSMRG00000022884)	CASK (ENSSMRG00000022883)	NYX (ENSSMRG00000022882)
Toxicofera	ANCESTRAL SPECIES	9	ENSGT00940000160841 #8	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027.n #15	ENSGT00510000047027.m #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821 #21	ENSGT00390000003874	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00520000055625.a	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00940000155600.b	ENSGT00940000160782	ENSGT00940000154443
Elapidae	ANCESTRAL SPECIES	10	ENSGT00940000160841 #8	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027.n #15	ENSGT00510000047027.m #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821 #21	ENSGT00390000003874	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000154420.B.e.a	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00520000055625.a	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00940000155600.b	ENSGT00940000160782
Elapidae_a	ANCESTRAL SPECIES	64	ENSGT00940000160841 #8	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027.n #15	ENSGT00510000047027.m #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821 #21	ENSGT00390000003874	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000154420.B.e.a	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00520000055625.a	ENSGT00940000155202.j.h	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00940000155600.b	ENSGT00940000160782
Acanthophiinae	ANCESTRAL SPECIES	58	ENSGT00940000160841 #8	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027.n #15	ENSGT00510000047027.m #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821 #21	ENSGT00390000003874	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000154420.B.e.a	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00520000055625.a	ENSGT00940000155202.j.h	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00940000155600.b	ENSGT00940000160782
Eastern brown snake	MODERN SPECIES	62	ENSPTXG00000010501	TMPRSS3 (ENSPTXG00000010502) #7	UBASH3A (ENSPTXG00000010504) #8	SLC37A1 (ENSPTXG00000010543) #10	PDE9A (ENSPTXG00000010544) #11	ENSPTXG00000010545 #13	PKNOX1 (ENSPTXG00000010546) #14	ENSPTXG00000010547 #15	CBS (ENSPTXG00000010597) #15	U2AF1 (ENSPTXG00000010599) #16	CRYAA (ENSPTXG00000010601) #17	SIK1 (ENSPTXG00000010603) #18	HSF2BP (ENSPTXG00000010604) #19	ENSPTXG00000010608 #21	PDXK (ENSPTXG00000010611)	AGPAT3 (ENSPTXG00000010613) #22	ENSPTXG00000010616	TRAPPC10 (ENSPTXG00000010618) #23	ENSPTXG00000010622	PWP2 (ENSPTXG00000010624) #24	GATD3 (ENSPTXG00000010628)	ENSPTXG00000010630 #25	DNMT3L (ENSPTXG00000010633) #26	DIPK2B (ENSPTXG00000010635)	ENSPTXG00000010636	ENSPTXG00000010638	FUNDC1 (ENSPTXG00000010639)	EFHC2 (ENSPTXG00000010640)	ENSPTXG00000010643	ENSPTXG00000010645	MAOA (ENSPTXG00000010646)
Mainland tiger snake	MODERN SPECIES	58	UBASH3A (ENSNSUG00000007336) #8	RSPH1 (ENSNSUG00000007352) #9	SLC37A1 (ENSNSUG00000007353) #10	PDE9A (ENSNSUG00000007354) #11	WDR4 (ENSNSUG00000007453) #12	ENSNSUG00000007457 #13	PKNOX1 (ENSNSUG00000007458) #14	ENSNSUG00000007464 #15	CBS (ENSNSUG00000007469) #15	U2AF1 (ENSNSUG00000007472) #16	CRYAA (ENSNSUG00000007474) #17	SIK1 (ENSNSUG00000007481) #18	HSF2BP (ENSNSUG00000007482) #19	ENSNSUG00000007484 #21	PDXK (ENSNSUG00000007485)	AGPAT3 (ENSNSUG00000007488) #22	ENSNSUG00000007510	TRAPPC10 (ENSNSUG00000007511) #23	PWP2 (ENSNSUG00000007518) #24	GATD3 (ENSNSUG00000007886)	ENSNSUG00000007887 #25	DNMT3L (ENSNSUG00000007894) #26	ENSNSUG00000007895	DIPK2B (ENSNSUG00000007910)	ENSNSUG00000007952	ENSNSUG00000019302	FUNDC1 (ENSNSUG00000019303)	EFHC2 (ENSNSUG00000019304)	ENSNSUG00000019305	ENSNSUG00000019306	MAOA (ENSNSUG00000019311)
Blue-lipped sea krait	MODERN SPECIES	8685																AGPAT3 (ENSLLTG00000012412) #22	ENSLLTG00000012419
Indian cobra	MODERN SPECIES	4	UBASH3A (ENSNNAG00000013860) #8	SLC37A1 (ENSNNAG00000013807) #10	PDE9A (ENSNNAG00000013241) #11	WDR4 (ENSNNAG00000013106) #12	ENSNNAG00000013081	ENSNNAG00000013069 #14	ENSNNAG00000013036 #14	ENSNNAG00000012987 #15	CBS (ENSNNAG00000011947) #15	U2AF1 (ENSNNAG00000011782) #16	CRYAA (ENSNNAG00000011756) #17	SIK1 (ENSNNAG00000011611) #18	HSF2BP (ENSNNAG00000011433) #19	ENSNNAG00000011390 #21	PDXK (ENSNNAG00000011216)	AGPAT3 (ENSNNAG00000011161) #22	ENSNNAG00000011145	TRAPPC10 (ENSNNAG00000011031) #23	PWP2 (ENSNNAG00000010729) #24	GATD3 (ENSNNAG00000010524)	ENSNNAG00000010432 #25	DNMT3L (ENSNNAG00000010342) #26	DIPK2B (ENSNNAG00000010306)	ENSNNAG00000008743	ENSNNAG00000008579	FUNDC1 (ENSNNAG00000008553)	EFHC2 (ENSNNAG00000008477)	ENSNNAG00000008469	ENSNNAG00000008250	MAOA (ENSNNAG00000007840)	CASK (ENSNNAG00000006518)
Lizard	MODERN SPECIES	2	ENSACAG00000044666	SLC37A1 (ENSACAG00000002938) #10	PDE9A (ENSACAG00000002778) #11	WDR4 (ENSACAG00000002741) #12	ENSACAG00000040081	PKNOX1 (ENSACAG00000002626) #14	ENSACAG00000002605 #15	CBS (ENSACAG00000017832) #15	u2af1 (ENSACAG00000037602) #16	CRYAA (ENSACAG00000017837) #17	ENSACAG00000045425	SIK1 (ENSACAG00000017841) #18	HSF2BP (ENSACAG00000017849) #19	ENSACAG00000017851 #21	PDXK (ENSACAG00000017853)	AGPAT3 (ENSACAG00000017856) #22	ENSACAG00000044735	ENSACAG00000034895	TRAPPC10 (ENSACAG00000017858) #23	PWP2 (ENSACAG00000017861) #24	gatd3a (ENSACAG00000036503)	ICOSLG (ENSACAG00000017873) #25	DNMT3L (ENSACAG00000028767) #26	DIPK2B (ENSACAG00000017875)	ENSACAG00000042702	ENSACAG00000039813	ENSACAG00000017877	ENSACAG00000038735	ENSACAG00000044837	FUNDC1 (ENSACAG00000036163)	EFHC2 (ENSACAG00000017897)
tuatara	MODERN SPECIES	648														ENSSPUG00000002834 #21	PDXK (ENSSPUG00000002881)	AGPAT3 (ENSSPUG00000002910) #22	TRAPPC10 (ENSSPUG00000002941) #23	PWP2 (ENSSPUG00000002980) #24	GATD3 (ENSSPUG00000003070)	ENSSPUG00000003075	ICOSLG (ENSSPUG00000003087) #25
Archelosauria	ANCESTRAL SPECIES		ENSGT00940000160841 #8	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027.n #15	ENSGT00510000047027.m #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821 #21	ENSGT00390000003874	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00520000055625.a	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00940000155600.b	ENSGT00990000203619.A.a	ENSGT01060000248589.C
Archosauria	ANCESTRAL SPECIES	2	ENSGT00940000160841 #8	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027.n #15	ENSGT00510000047027.m #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821 #21	ENSGT00390000003874	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT01040000241275	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00520000055625.a	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00940000155600.b	ENSGT00990000203619.A.a
Aves	ANCESTRAL SPECIES		ENSGT00940000160841 #8	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027.n #15	ENSGT00510000047027.m #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821 #21	ENSGT00390000003874	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT01040000241275	ENSGT00940000161590 #25	ENSGT00520000055625.a	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00940000155600.b	ENSGT00990000203619.A.a	ENSGT01060000248589.C
Neognathae	ANCESTRAL SPECIES	1	ENSGT00940000160841 #8	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027.n #15	ENSGT00510000047027.m #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821 #21	ENSGT00390000003874	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT01040000241275	ENSGT00940000161590 #25	ENSGT00520000055625.a	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00940000155600.b	ENSGT00990000203619.A.a	ENSGT01060000248589.C
Galloanserae	ANCESTRAL SPECIES	1	ENSGT00940000160841 #8	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027.n #15	ENSGT00510000047027.m #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821 #21	ENSGT00390000003874	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT01040000241275	ENSGT00940000161590 #25	ENSGT00520000055625.a	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00940000155600.b	ENSGT00990000203619.A.a	ENSGT01060000248589.C
Anatidae	ANCESTRAL SPECIES	6	ENSGT00940000160841 #8	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027.n #15	ENSGT00510000047027.m #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821 #21	ENSGT00390000003874	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT01040000241275	ENSGT00940000161590 #25	ENSGT00520000055625.a	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00390000004304	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00990000203619.A.a	ENSGT01060000248589.C
Duck	MODERN SPECIES		UBASH3A (ENSAPLG00000008138) #8	RSPH1 (ENSAPLG00000007969) #9	SLC37A1 (ENSAPLG00000007435) #10	PDE9A (ENSAPLG00000007348) #11	WDR4 (ENSAPLG00000007171) #12	ENSAPLG00000001508 #13	PKNOX1 (ENSAPLG00000009259) #14	ENSAPLG00000029470 #15	CBS (ENSAPLG00000009685) #15	U2AF1 (ENSAPLG00000030109) #16	CRYAA (ENSAPLG00000017972) #17	SIK1 (ENSAPLG00000004813) #18	HSF2BP (ENSAPLG00000004231) #19	ENSAPLG00000004310 #21	PDXK (ENSAPLG00000004480)	AGPAT3 (ENSAPLG00000009814) #22	TRAPPC10 (ENSAPLG00000010086) #23	PWP2 (ENSAPLG00000010371) #24	GATD3 (ENSAPLG00000018842)	ENSAPLG00000010861	ICOSLG (ENSAPLG00000010902) #25	DIPK2B (ENSAPLG00000010917)	ENSAPLG00000011033	ENSAPLG00000027576	FUNDC1 (ENSAPLG00000012067)	EFHC2 (ENSAPLG00000012158)	NDP (ENSAPLG00000030151)	ENSAPLG00000012540	MAOA (ENSAPLG00000013230)	GPR82 (ENSAPLG00000019460)	GPR34 (ENSAPLG00000002101)
Pink-footed goose	MODERN SPECIES	12	UBASH3A (ENSABRG00000015080) #8	RSPH1 (ENSABRG00000015073) #9	SLC37A1 (ENSABRG00000015063) #10	PDE9A (ENSABRG00000015054) #11	WDR4 (ENSABRG00000015048) #12	ENSABRG00000015047 #13	PKNOX1 (ENSABRG00000015044) #14	ENSABRG00000015041 #15	CBS (ENSABRG00000015037) #15	U2AF1 (ENSABRG00000015022) #16	CRYAA (ENSABRG00000015013) #17	SIK1 (ENSABRG00000015006) #18	HSF2BP (ENSABRG00000015002) #19	ENSABRG00000014992 #21	PDXK (ENSABRG00000014987)	AGPAT3 (ENSABRG00000014898) #22	TRAPPC10 (ENSABRG00000014839) #23	PWP2 (ENSABRG00000014711) #24	GATD3 (ENSABRG00000014692)	ICOSLG (ENSABRG00000014688) #25	DIPK2B (ENSABRG00000014660)	ENSABRG00000010917	FUNDC1 (ENSABRG00000010568)	EFHC2 (ENSABRG00000010543)	ENSABRG00000010523	ENSABRG00000010502	MAOA (ENSABRG00000010487)	GPR34 (ENSABRG00000010454)	CASK (ENSABRG00000010365)	NYX (ENSABRG00000010347)	ENSABRG00000010314
Phasianidae	ANCESTRAL SPECIES		ENSGT00940000160841 #8	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027.n #15	ENSGT00510000047027.m #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821 #21	ENSGT00390000003874	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873.q #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT01040000241275	ENSGT00940000161590 #25	ENSGT00520000055625.a	ENSGT00940000155202.j.b	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00940000155600.b	ENSGT00990000203619.A.a	ENSGT01060000248589.C
Phasianidae_b	ANCESTRAL SPECIES		ENSGT00940000160841 #8	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027.n #15	ENSGT00510000047027.m #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821 #21	ENSGT00390000003874	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873.q #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT01040000241275	ENSGT00940000161590 #25	ENSGT00520000055625.a	ENSGT00940000155202.j.a	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00940000155600.b	ENSGT00990000203619.A.a	ENSGT01060000248589.C
Chicken	MODERN SPECIES		UBASH3A (ENSGALG00010011139) #8	RSPH1 (ENSGALG00010011185) #9	SLC37A1 (ENSGALG00010011211) #10	PDE9A (ENSGALG00010011244) #11	WDR4 (ENSGALG00010011275) #12	NDUFV3 (ENSGALG00010011293) #13	PKNOX1 (ENSGALG00010011340) #14	ENSGALG00010011814 #15	CBS (ENSGALG00010011839) #15	U2AF1 (ENSGALG00010011880) #16	CRYAA (ENSGALG00010011889) #17	SIK1 (ENSGALG00010011896) #18	HSF2BP (ENSGALG00010011917) #19	RRP1B (ENSGALG00010011925) #21	PDXK (ENSGALG00010011950)	AGPAT3 (ENSGALG00010011961) #22	TRAPPC10 (ENSGALG00010011973) #23	PWP2 (ENSGALG00010014726) #24	GATD3A (ENSGALG00010011977)	ENSGALG00010011985	ICOSLG (ENSGALG00010012041) #25	C1HXORF36 (ENSGALG00010009786)	ENSGALG00010011421	FUNDC1 (ENSGALG00010011440)	EFHC2 (ENSGALG00010011468)	NDP (ENSGALG00010011475)	MAOB (ENSGALG00010011533)	MAOA (ENSGALG00010011546)	CASK (ENSGALG00010002424)	GPR82 (ENSGALG00010002439)	GPR34 (ENSGALG00010002434)
Turkey	MODERN SPECIES		ENSMGAG00000014564	ENSMGAG00000014604	ENSMGAG00000014606	ENSMGAG00000014605	EFHC2 (ENSMGAG00000014603)	ENSMGAG00000014602	ENSMGAG00000017681	ENSMGAG00000014601	ENSMGAG00000017006	ENSMGAG00000014599	ENSMGAG00000014597 #25	ENSMGAG00000017291	ENSMGAG00000014596 #24	ENSMGAG00000014594 #23	ENSMGAG00000019240 #23	ENSMGAG00000014593 #22	ENSMGAG00000014592	ENSMGAG00000014591 #21	ENSMGAG00000014590 #19	ENSMGAG00000014589 #18	ENSMGAG00000017966 #17	ENSMGAG00000014587 #16	ENSMGAG00000014586 #15	ENSMGAG00000014582 #14	ENSMGAG00000014581 #13	ENSMGAG00000014577 #11	ENSMGAG00000014580 #12	SLC37A1 (ENSMGAG00000014579) #10	TFF2 (ENSMGAG00000014574)	ENSMGAG00000014575 #7	UBASH3A (ENSMGAG00000014576) #8
Japanese quail	MODERN SPECIES		UBASH3A (ENSCJPG00005008708) #8	RSPH1 (ENSCJPG00005008709) #9	SLC37A1 (ENSCJPG00005008710) #10	PDE9A (ENSCJPG00005008711) #11	WDR4 (ENSCJPG00005008712) #12	ENSCJPG00005008713 #13	PKNOX1 (ENSCJPG00005008714) #14	ENSCJPG00005008715 #15	CBS (ENSCJPG00005008721) #15	U2AF1 (ENSCJPG00005008722) #16	CRYAA (ENSCJPG00005008723) #17	SIK1 (ENSCJPG00005008725) #18	HSF2BP (ENSCJPG00005008756) #19	ENSCJPG00005008758 #21	PDXK (ENSCJPG00005008759)	AGPAT3 (ENSCJPG00005008761) #22	TRAPPC10 (ENSCJPG00005008778) #23	PWP2 (ENSCJPG00005008782) #24	ICOSLG (ENSCJPG00005008975) #25	DIPK2B (ENSCJPG00005008983)	ENSCJPG00005009018	FUNDC1 (ENSCJPG00005012620)	EFHC2 (ENSCJPG00005012621)	ENSCJPG00005012623	ENSCJPG00005012624	MAOA (ENSCJPG00005012625)	CASK (ENSCJPG00005012631)	GPR82 (ENSCJPG00005012632)	GPR34 (ENSCJPG00005012633)	NYX (ENSCJPG00005012634)	ENSCJPG00005012635
Neognathae_b	ANCESTRAL SPECIES		ENSGT00940000160841 #8	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027.n #15	ENSGT00510000047027.m #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821 #21	ENSGT00390000003874	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT01040000241275	ENSGT00940000161590 #25	ENSGT00520000055625.a	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00940000155600.b	ENSGT00990000203619.A.a	ENSGT01060000248589.C
Passeriformes	ANCESTRAL SPECIES	1	ENSGT00940000160841 #8	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027.n #15	ENSGT00510000047027.m #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821 #21	ENSGT00390000003874	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT01040000241275	ENSGT00940000161590 #25	ENSGT00520000055625.a	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00940000155600.b	ENSGT00990000203619.A.a	ENSGT01060000248589.C
Great tit	MODERN SPECIES		RSPH1 (ENSPMJG00000010629) #9	SLC37A1 (ENSPMJG00000010630) #10	PDE9A (ENSPMJG00000010631) #11	WDR4 (ENSPMJG00000010640) #12	ENSPMJG00000010687 #13	PKNOX1 (ENSPMJG00000010709) #14	ENSPMJG00000010711 #15	CBS (ENSPMJG00000010712) #15	ENSPMJG00000010715	U2AF1 (ENSPMJG00000010719) #16	CRYAA (ENSPMJG00000010726) #17	SIK1 (ENSPMJG00000010767) #18	HSF2BP (ENSPMJG00000010768) #19	ENSPMJG00000010769 #21	PDXK (ENSPMJG00000010770)	AGPAT3 (ENSPMJG00000010793) #22	TRAPPC10 (ENSPMJG00000010794) #23	PWP2 (ENSPMJG00000010796) #24	GATD3 (ENSPMJG00000010797)	ENSPMJG00000010798	ENSPMJG00000010800 #25	DIPK2B (ENSPMJG00000010838)	ENSPMJG00000010877	FUNDC1 (ENSPMJG00000010881)	EFHC2 (ENSPMJG00000010882)	ENSPMJG00000010883	ENSPMJG00000010884	ENSPMJG00000010923	MAOA (ENSPMJG00000010926)	CASK (ENSPMJG00000010956)	GPR82 (ENSPMJG00000010961)
Passeriformes_d	ANCESTRAL SPECIES	1	ENSGT00940000160841 #8	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027.n #15	ENSGT00510000047027.m #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821 #21	ENSGT00390000003874	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT01040000241275	ENSGT00940000161590 #25	ENSGT00520000055625.a	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00990000203619.A.a	ENSGT01060000248589.C	ENSGT00940000155600.b
Passeriformes_g	ANCESTRAL SPECIES	2	ENSGT00940000160841 #8	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027.n #15	ENSGT00510000047027.m #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821 #21	ENSGT00390000003874	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT01040000241275	ENSGT00940000161590 #25	ENSGT00520000055625.a	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00990000203619.A.a	ENSGT01060000248589.C	ENSGT00940000155600.b
Medium ground finch	MODERN SPECIES	141	RSPH1 (ENSGFOG00000014528) #9	SLC37A1 (ENSGFOG00000014521) #10	PDE9A (ENSGFOG00000014513) #11	WDR4 (ENSGFOG00000014511) #12	ENSGFOG00000014508 #13	PKNOX1 (ENSGFOG00000014506) #14	ENSGFOG00000014502 #15	CBS (ENSGFOG00000014500) #15	U2AF1 (ENSGFOG00000014496) #16	ENSGFOG00000014492	CRYAA (ENSGFOG00000014491) #17	SIK1 (ENSGFOG00000014484) #18	HSF2BP (ENSGFOG00000014482) #19	ENSGFOG00000014480 #21	PDXK (ENSGFOG00000014477)	AGPAT3 (ENSGFOG00000014473) #22	TRAPPC10 (ENSGFOG00000014464) #23	PWP2 (ENSGFOG00000014422) #24	GATD3 (ENSGFOG00000014405)	ICOSLG (ENSGFOG00000014401) #25
Passeroidea	ANCESTRAL SPECIES	10	ENSGT00940000160841 #8	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027.n #15	ENSGT00510000047027.m #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821 #21	ENSGT00390000003874	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT01040000241275	ENSGT00940000161590 #25	ENSGT00520000055625.a	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00940000155600.b	ENSGT00940000160782	ENSGT00940000154443
Zebra finch	MODERN SPECIES		UBASH3A (ENSTGUG00000005618) #8	RSPH1 (ENSTGUG00000005646) #9	SLC37A1 (ENSTGUG00000005671) #10	PDE9A (ENSTGUG00000005695) #11	WDR4 (ENSTGUG00000005733) #12	ENSTGUG00000005743 #13	PKNOX1 (ENSTGUG00000005745) #14	ENSTGUG00000005778 #15	CBS (ENSTGUG00000005790) #15	U2AF1 (ENSTGUG00000028798) #16	CRYAA (ENSTGUG00000024562) #17	SIK1 (ENSTGUG00000005884) #18	HSF2BP (ENSTGUG00000005915) #19	ENSTGUG00000005926 #21	PDXK (ENSTGUG00000021550)	AGPAT3 (ENSTGUG00000005961) #22	TRAPPC10 (ENSTGUG00000005983) #23	PWP2 (ENSTGUG00000005996) #24	GATD3 (ENSTGUG00000006045)	ENSTGUG00000006063 #25	DIPK2B (ENSTGUG00000006067)	ENSTGUG00000006075	FUNDC1 (ENSTGUG00000006139)	EFHC2 (ENSTGUG00000006145)	ENSTGUG00000023894	ENSTGUG00000006169	MAOA (ENSTGUG00000006274)	GPR82 (ENSTGUG00000006431)	GPR34 (ENSTGUG00000006433)	CASK (ENSTGUG00000006375)	NYX (ENSTGUG00000006438)
Common canary	MODERN SPECIES	11	UBASH3A (ENSSCAG00000010991) #8	RSPH1 (ENSSCAG00000011006) #9	SLC37A1 (ENSSCAG00000011016) #10	PDE9A (ENSSCAG00000011039) #11	WDR4 (ENSSCAG00000011104) #12	ENSSCAG00000011106 #13	PKNOX1 (ENSSCAG00000011110) #14	ENSSCAG00000011125 #15	CBS (ENSSCAG00000011177) #15	U2AF1 (ENSSCAG00000011188) #16	CRYAA (ENSSCAG00000011193) #17	SIK1 (ENSSCAG00000011195) #18	HSF2BP (ENSSCAG00000011206) #19	ENSSCAG00000011213 #21	PDXK (ENSSCAG00000011227)	AGPAT3 (ENSSCAG00000011265) #22	TRAPPC10 (ENSSCAG00000011280) #23	PWP2 (ENSSCAG00000011297) #24	GATD3 (ENSSCAG00000011312)	ENSSCAG00000011316	ENSSCAG00000011328 #25	DIPK2B (ENSSCAG00000011357)	ENSSCAG00000011378	FUNDC1 (ENSSCAG00000011418)	EFHC2 (ENSSCAG00000011425)	ENSSCAG00000011430	ENSSCAG00000011433	MAOA (ENSSCAG00000011441)	CASK (ENSSCAG00000011458)	GPR82 (ENSSCAG00000011488)	GPR34 (ENSSCAG00000011492)
Flycatcher	MODERN SPECIES		TMPRSS3 (ENSFALG00000002042) #7	UBASH3A (ENSFALG00000002028) #8	RSPH1 (ENSFALG00000002230) #9	SLC37A1 (ENSFALG00000001964) #10	PDE9A (ENSFALG00000001967) #11	WDR4 (ENSFALG00000027087) #12	ENSFALG00000001974 #13	PKNOX1 (ENSFALG00000001975) #14	CBS (ENSFALG00000001994) #15	U2AF1 (ENSFALG00000027776) #16	CRYAA (ENSFALG00000002001) #17	SIK1 (ENSFALG00000002012) #18	HSF2BP (ENSFALG00000002019) #19	ENSFALG00000002024 #21	PDXK (ENSFALG00000012249)	AGPAT3 (ENSFALG00000012275) #22	ENSFALG00000025043	TRAPPC10 (ENSFALG00000012289) #23	PWP2 (ENSFALG00000012300) #24	GATD3 (ENSFALG00000012311)	ENSFALG00000024438	ICOSLG (ENSFALG00000012321) #25	ENSFALG00000001469	ENSFALG00000001470	FUNDC1 (ENSFALG00000001471)	EFHC2 (ENSFALG00000001472)	ENSFALG00000001480	MAOA (ENSFALG00000001499)	ENSFALG00000024766	CASK (ENSFALG00000001525)	GPR34 (ENSFALG00000014501)
Neognathae_c	ANCESTRAL SPECIES	4	ENSGT00940000160841 #8	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027.n #15	ENSGT00510000047027.m #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821 #21	ENSGT00390000003874	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT01040000241275	ENSGT00940000161590 #25	ENSGT00520000055625.a	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00940000155600.b	ENSGT00990000203619.A.a	ENSGT01060000248589.C
Kakapo	MODERN SPECIES	11	UBASH3A (ENSSHBG00005019270) #8	RSPH1 (ENSSHBG00005019277) #9	SLC37A1 (ENSSHBG00005019286) #10	PDE9A (ENSSHBG00005019339) #11	WDR4 (ENSSHBG00005019343) #12	NDUFV3 (ENSSHBG00005019346) #13	PKNOX1 (ENSSHBG00005019349) #14	ENSSHBG00005019355 #15	CBS (ENSSHBG00005000427) #15	U2AF1 (ENSSHBG00005009756) #16	CRYAA (ENSSHBG00005009784) #17	SIK1 (ENSSHBG00005009793) #18	HSF2BP (ENSSHBG00005009817) #19	ENSSHBG00005009836 #21	PDXK (ENSSHBG00005009861)	AGPAT3 (ENSSHBG00005009891) #22	TRAPPC10 (ENSSHBG00005009916) #23	PWP2 (ENSSHBG00005010009) #24	GATD3 (ENSSHBG00005010181)	ENSSHBG00005010205	ICOSLG (ENSSHBG00005010235) #25	DIPK2B (ENSSHBG00005010284)	ENSSHBG00005010530	FUNDC1 (ENSSHBG00005011082)	EFHC2 (ENSSHBG00005011127)	ENSSHBG00005011220	ENSSHBG00005011242	MAOA (ENSSHBG00005011266)	CASK (ENSSHBG00005011323)	GPR82 (ENSSHBG00005011382)	GPR34 (ENSSHBG00005011397)
Golden eagle	MODERN SPECIES	23	TMPRSS3 (ENSACCG00020007654) #7	UBASH3A (ENSACCG00020007674) #8	RSPH1 (ENSACCG00020007688) #9	SLC37A1 (ENSACCG00020007707) #10	PDE9A (ENSACCG00020007792) #11	WDR4 (ENSACCG00020007850) #12	NDUFV3 (ENSACCG00020007876) #13	PKNOX1 (ENSACCG00020007897) #14	ENSACCG00020007941 #15	CBS (ENSACCG00020007976) #15	U2AF1 (ENSACCG00020000366) #16	CRYAA (ENSACCG00020000396) #17	SIK1 (ENSACCG00020000415) #18	HSF2BP (ENSACCG00020000473) #19	ENSACCG00020000551 #21	AGPAT3 (ENSACCG00020000595) #22	TRAPPC10 (ENSACCG00020000627) #23	PWP2 (ENSACCG00020000686) #24	GATD3 (ENSACCG00020000749)	ICOSLG (ENSACCG00020000802) #25	DIPK2B (ENSACCG00020000932)	ENSACCG00020001083	FUNDC1 (ENSACCG00020001207)	EFHC2 (ENSACCG00020001221)	ENSACCG00020001244	ENSACCG00020001263	MAOA (ENSACCG00020001289)	CASK (ENSACCG00020001395)	GPR82 (ENSACCG00020001511)	GPR34 (ENSACCG00020001520)	NYX (ENSACCG00020001529)
African ostrich	MODERN SPECIES	769	UBASH3A (ENSSCUG00000012087) #8	RSPH1 (ENSSCUG00000012092) #9	SLC37A1 (ENSSCUG00000012095) #10	PDE9A (ENSSCUG00000012105) #11	WDR4 (ENSSCUG00000012111) #12	ENSSCUG00000012114 #13	PKNOX1 (ENSSCUG00000012117) #14	ENSSCUG00000012127 #15	CBS (ENSSCUG00000012140) #15	U2AF1 (ENSSCUG00000012146) #16	CRYAA (ENSSCUG00000012154) #17	SIK1 (ENSSCUG00000012156) #18	HSF2BP (ENSSCUG00000012165) #19	ENSSCUG00000012171 #21	PDXK (ENSSCUG00000012182)	AGPAT3 (ENSSCUG00000012198) #22	TRAPPC10 (ENSSCUG00000012202) #23	PWP2 (ENSSCUG00000012205) #24	GATD3 (ENSSCUG00000012211)	ICOSLG (ENSSCUG00000012219) #25	DIPK2B (ENSSCUG00000012227)	ENSSCUG00000012987	FUNDC1 (ENSSCUG00000014599)	EFHC2 (ENSSCUG00000014602)	ENSSCUG00000014606	ENSSCUG00000014608	MAOA (ENSSCUG00000014612)	ENSSCUG00000014621	GPR82 (ENSSCUG00000014622)	GPR34 (ENSSCUG00000014623)
Australian saltwater crocodile	MODERN SPECIES	27	RSPH1 (ENSCPRG00005016260) #9	SLC37A1 (ENSCPRG00005016286) #10	PDE9A (ENSCPRG00005016345) #11	WDR4 (ENSCPRG00005016385) #12	ENSCPRG00005016392	PKNOX1 (ENSCPRG00005016400) #14	ENSCPRG00005016414 #15	CBS (ENSCPRG00005016418) #15	U2AF1 (ENSCPRG00005016421) #16	CRYAA (ENSCPRG00005016425) #17	SIK1 (ENSCPRG00005016431) #18	HSF2BP (ENSCPRG00005016440) #19	ENSCPRG00005016442	ENSCPRG00005016447 #21	PDXK (ENSCPRG00005016474)	AGPAT3 (ENSCPRG00005016481) #22	TRAPPC10 (ENSCPRG00005016491) #23	PWP2 (ENSCPRG00005016498) #24	GATD3 (ENSCPRG00005016510)	ENSCPRG00005016512	ICOSLG (ENSCPRG00005016520) #25	DNMT3L (ENSCPRG00005016525) #26	DIPK2B (ENSCPRG00005016544)	ENSCPRG00005016852	FUNDC1 (ENSCPRG00005017487)	EFHC2 (ENSCPRG00005017502)	ENSCPRG00005017509	ENSCPRG00005017515	MAOA (ENSCPRG00005017529)	CASK (ENSCPRG00005017561)	GPR82 (ENSCPRG00005017600)
Cryptodira	ANCESTRAL SPECIES		ENSGT00940000160841 #8	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00510000047027.n #15	ENSGT00510000047027.m #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821 #21	ENSGT00390000003874	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00520000055625.a	ENSGT00940000155202.j	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00990000203619.A.a	ENSGT01060000248589.C	ENSGT00940000155600.b
Testudinoidea	ANCESTRAL SPECIES	1	ENSGT00940000160841 #8	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505.bb #14	ENSGT00510000047027.n #15	ENSGT00510000047027.m #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821 #21	ENSGT00390000003874	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00520000055625.a	ENSGT00940000155202.j.e	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00990000203619.A.a	ENSGT01060000248589.C	ENSGT00940000155600.b
Testudinidae	ANCESTRAL SPECIES		ENSGT00940000160841 #8	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505.bb #14	ENSGT00510000047027.n #15	ENSGT00510000047027.m #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821 #21	ENSGT00390000003874	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00520000055625.a	ENSGT00940000155202.j.e	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00940000155600.b	ENSGT00990000203619.A.a	ENSGT01060000248589.C
Abingdon island giant tortoise	MODERN SPECIES	2161																AGPAT3 (ENSCABG00000018414) #22	TRAPPC10 (ENSCABG00000018247) #23	PWP2 (ENSCABG00000018051) #24	GATD3 (ENSCABG00000018035)	ICOSLG (ENSCABG00000018032) #25	DNMT3L (ENSCABG00000018030) #26	DIPK2B (ENSCABG00000018027)
Goode s thornscrub tortoise	MODERN SPECIES		TMPRSS3 (ENSGEVG00005001298) #7	UBASH3A (ENSGEVG00005001268) #8	SLC37A1 (ENSGEVG00005001209) #10	PDE9A (ENSGEVG00005001079) #11	WDR4 (ENSGEVG00005000994) #12	ENSGEVG00005000977 #13	PKNOX1 (ENSGEVG00005000925) #14	ENSGEVG00005000868 #15	CBS (ENSGEVG00005000807) #15	U2AF1 (ENSGEVG00005000755) #16	CRYAA (ENSGEVG00005000741) #17	SIK1 (ENSGEVG00005000723) #18	HSF2BP (ENSGEVG00005000709) #19	ENSGEVG00005000688 #21	PDXK (ENSGEVG00005000653)	AGPAT3 (ENSGEVG00005000632) #22	TRAPPC10 (ENSGEVG00005000565) #23	PWP2 (ENSGEVG00005000519) #24	GATD3 (ENSGEVG00005000495)	ICOSLG (ENSGEVG00005000470) #25	DNMT3L (ENSGEVG00005000441) #26	DIPK2B (ENSGEVG00005000423)	ENSGEVG00005000311	FUNDC1 (ENSGEVG00005000226)	EFHC2 (ENSGEVG00005000187)	ENSGEVG00005000168	ENSGEVG00005000126	MAOA (ENSGEVG00005000038)	ENSGEVG00005000013	GPR82 (ENSGEVG00005005110)	GPR34 (ENSGEVG00005005096)
Emydidae	ANCESTRAL SPECIES	28	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505.bb #14	ENSGT00510000047027.n #15	ENSGT00510000047027.m #15	ENSGT00950000183152.B.c.a #16	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000011821 #21	ENSGT00390000003874	ENSGT00950000186123.b	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a	ENSGT00940000161590 #25	ENSGT00940000162228 #26	ENSGT00520000055625.a	ENSGT00940000155202.j.e	ENSGT00940000154517	ENSGT00530000063528.B	ENSGT00940000166930	ENSGT00940000166107	ENSGT00940000160514	ENSGT00990000203619.A.a	ENSGT01060000248589.C	ENSGT00940000155600.b
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	9														ENSTMTG00000012150	ENSTMTG00000012127	ENSTMTG00000012114 #22	ENSTMTG00000012051 #23	ENSTMTG00000012016 #24	ENSTMTG00000012004	ENSTMTG00000011991 #25	ENSTMTG00000011970 #26	ENSTMTG00000011930	ENSTMTG00000011738	ENSTMTG00000011695	ENSTMTG00000011611	ENSTMTG00000011592	ENSTMTG00000011586	ENSTMTG00000011563	ENSTMTG00000010314	ENSTMTG00000010302	ENSTMTG00000010016
Three-toed box turtle	MODERN SPECIES	7														ENSTMTG00000001770	ENSTMTG00000001766	ENSTMTG00000001759 #22	ENSTMTG00000001743 #23	ENSTMTG00000001731 #24	ENSTMTG00000001725	ENSTMTG00000001720 #25	ENSTMTG00000001711 #26	ENSTMTG00000001694	ENSTMTG00000001519	FUNDC1 (ENSTMTG00000001463)	ENSTMTG00000001440	ENSTMTG00000001430	ENSTMTG00000001354	ENSTMTG00000001327	ENSTMTG00000001318	GPR34 (ENSTMTG00000001312)	ENSTMTG00000001227
painted turtle	MODERN SPECIES	1112															WT1 (ENSCPBG00000018273)	AGPAT3 (ENSCPBG00000018276) #22	TRAPPC10 (ENSCPBG00000018280) #23	PWP2 (ENSCPBG00000018335) #24	GATD3 (ENSCPBG00000018341)
Chinese turtle	MODERN SPECIES	2218	ENSPSIG00000000453	RSPH1 (ENSPSIG00000013753) #9	SLC37A1 (ENSPSIG00000013862) #10	PDE9A (ENSPSIG00000015118) #11	WDR4 (ENSPSIG00000017237) #12	NDUFV3 (ENSPSIG00000017660) #13	PKNOX1 (ENSPSIG00000017680) #14	ENSPSIG00000018134 #15	CBS (ENSPSIG00000018147) #15	U2AF1 (ENSPSIG00000007232) #16	CRYAA (ENSPSIG00000007237) #17	SIK1 (ENSPSIG00000007456) #18	HSF2BP (ENSPSIG00000007635) #19	ENSPSIG00000008152 #21	PDXK (ENSPSIG00000008160)	AGPAT3 (ENSPSIG00000008828) #22	TRAPPC10 (ENSPSIG00000009311) #23	PWP2 (ENSPSIG00000009783) #24	GATD3 (ENSPSIG00000010691)	ICOSLG (ENSPSIG00000010840) #25	DNMT3L (ENSPSIG00000010851) #26	DIPK2B (ENSPSIG00000011247)	ENSPSIG00000011316	FUNDC1 (ENSPSIG00000013793)	EFHC2 (ENSPSIG00000013800)	ENSPSIG00000014254	ENSPSIG00000014322	MAOA (ENSPSIG00000015202)	ENSPSIG00000000458	ENSPSIG00000000464	CASK (ENSPSIG00000015999)
Anura	ANCESTRAL SPECIES	289											ENSGT00510000047027 #15	ENSGT00950000183152.B.c.a #16	ENSGT00390000008490 #19	ENSGT00390000011821 #21	ENSGT00390000003874	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24
Leishan spiny toad	MODERN SPECIES	5	STXBP5L (ENSLLEG00000006960)	POLQ (ENSLLEG00000006581)	ENSLLEG00000006521	CFAP44 (ENSLLEG00000006250)	ENSLLEG00000006166	BOC (ENSLLEG00000005991)	CASR (ENSLLEG00000005947)	ENSLLEG00000005926	ENSLLEG00000005890	ENSLLEG00000005843	ENSLLEG00000002454	ENSLLEG00000002438	ENSLLEG00000002430	ENSLLEG00000002422	PDXK (ENSLLEG00000002397)	AGPAT3 (ENSLLEG00000002370) #22	ENSLLEG00000002356	ENSLLEG00000002341	ENSLLEG00000002335	ENSLLEG00000002318	ENSLLEG00000002260 #21	ENSLLEG00000002240	ENSLLEG00000002211 #19	ENSLLEG00000002190	ENSLLEG00000002172	PKNOX1 (ENSLLEG00000002137) #14	ENSLLEG00000002114	ENSLLEG00000002089 #12	ENSLLEG00000002074	ENSLLEG00000002050 ##11	ENSLLEG00000001953
Frog	MODERN SPECIES	2	timmdc1 (ENSXETG00000041609)	ENSXETG00000041110	ENSXETG00000042310	ENSXETG00000041442	ENSXETG00000045526	icoslg (ENSXETG00000047833) #25	ENSXETG00000045493	u2af1 (ENSXETG00000040592) #16	cryaa (ENSXETG00000020802) #17	ENSXETG00000044072	ENSXETG00000045504	ENSXETG00000044642	hsf2bp (ENSXETG00000045215) #19	rrp1b (ENSXETG00000013683) #21	pdxk (ENSXETG00000038974)	agpat3 (ENSXETG00000044392) #22	trappc10 (ENSXETG00000018000) #23	pwp2 (ENSXETG00000047683) #24	ENSXETG00000044125	ENSXETG00000044998	XB5894678 [provisional:btnl10] (ENSXETG00000046927)	vtcn1 (ENSXETG00000039560)	ENSXETG00000041646	ENSXETG00000018007	ENSXETG00000045978	fstl1 (ENSXETG00000042356)	lrrc58 (ENSXETG00000045906)	gpr156 (ENSXETG00000035001)	pla1a (ENSXETG00000045043)	gsk3b (ENSXETG00000047929)	ENSXETG00000048690
Coelacanth	MODERN SPECIES	359															PDXK (ENSLACG00000022240)	AGPAT3 (ENSLACG00000017316) #22	SIK1 (ENSLACG00000017075) #18	CRYAA (ENSLACG00000016822) #17	TRAPPC10 (ENSLACG00000016449) #23	PRDM15 (ENSLACG00000016206)	zgc:112083 (ENSLACG00000016085)	RIPK4 (ENSLACG00000015865)	TMPRSS2 (ENSLACG00000015538)	ENSLACG00000015439	FAM3B (ENSLACG00000015233)	BACE2 (ENSLACG00000015003)	ENSLACG00000013522	DSCAM (ENSLACG00000005272)	PCP4 (ENSLACG00000022631)	ENSLACG00000001489
Actinopterygii	ANCESTRAL SPECIES	243			ENSGT00390000011821 #21	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00950000183152.B.c.a #16	ENSGT00510000047027 #15	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000003874	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a
Neopterygii	ANCESTRAL SPECIES	261					ENSGT00990000204624	ENSGT00530000063970.e	ENSGT00530000063970.f	ENSGT00940000164706	ENSGT01030000235355	ENSGT00950000183152.B.c.a #16	ENSGT00510000047027 #15	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000003874	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24
Osteoglossocephalai	ANCESTRAL SPECIES	53	ENSGT00520000055635.c.a.a.b	ENSGT00940000161118	ENSGT00390000003024	ENSGT00940000164706.b	ENSGT00990000204624	ENSGT00530000063970.e	ENSGT00530000063970.f	ENSGT00940000164706.a	ENSGT01030000235355	ENSGT00950000183152.B.c.a #16	ENSGT00510000047027.c #15	ENSGT00940000160159 #17	ENSGT00940000154989 #18	ENSGT00390000008490 #19	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24
Osteoglossiformes	ANCESTRAL SPECIES	328			ENSGT00390000011821 #21	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000008902.kb	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00940000158589.b.a #7	ENSGT00940000159393	ENSGT00940000159775.d	ENSGT00390000016547	ENSGT00940000158449	ENSGT00890000139463.b.b.b.a	ENSGT00390000003874.a.b	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24
Asian bonytongue	MODERN SPECIES	5	ENSSFOG00015000387	ENSSFOG00015025471	ENSSFOG00015000478	cpox (ENSSFOG00015000500)	prrg1 (ENSSFOG00015024994)	ENSSFOG00015000545	ENSSFOG00015025496	ENSSFOG00015003932 #21	PDE9A (ENSSFOG00015024742) #11	wdr4 (ENSSFOG00015025663) #12	si:ch211-140m22.7 (ENSSFOG00015003867)	ENSSFOG00015032139 #13	pknox1.1 (ENSSFOG00015003790) #14	ENSSFOG00015003689 #7	pdxkb (ENSSFOG00015003619)	agpat3 (ENSSFOG00015027195) #22	TRAPPC10 (ENSSFOG00015003451) #23	pwp2h (ENSSFOG00015003316) #24	ENSSFOG00015028038	ENSSFOG00015003266	zgc:172295 (ENSSFOG00015003129)	FAM124A (ENSSFOG00015003098)	serpine3 (ENSSFOG00015003064)	ints6 (ENSSFOG00015002988)	wdfy2 (ENSSFOG00015002927)	dhrs12 (ENSSFOG00015002871)	ENSSFOG00015002862	ATP7B (ENSSFOG00015002792)	RUBCNL (ENSSFOG00015002750)	LRCH1 (ENSSFOG00015002580)	ENSSFOG00015028179
P. kingsleyae	MODERN SPECIES	467	gjb8 (ENSPKIG00000003687)	gja3 (ENSPKIG00000003667)	ZMYM2 (ENSPKIG00000003622)	pspc1 (ENSPKIG00000003578)	mphosph8 (ENSPKIG00000003488)	ENSPKIG00000003454	ENSPKIG00000003422 #21	PDE9A (ENSPKIG00000003345) #11	wdr4 (ENSPKIG00000003403) #12	ENSPKIG00000003314	ENSPKIG00000003299 #13	pknox1.1 (ENSPKIG00000003263) #14	TMPRSS3 (ENSPKIG00000003233) #7	ENSPKIG00000003013	pdxkb (ENSPKIG00000002898)	agpat3 (ENSPKIG00000002841) #22	TRAPPC10 (ENSPKIG00000002787) #23	pwp2h (ENSPKIG00000002693) #24
Clupeocephala	ANCESTRAL SPECIES	23	ENSGT00940000158231.k	ENSGT00940000158406	ENSGT00510000051617	ENSGT00940000155131	ENSGT00390000011821 #21	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000008902.kb	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00940000158589.b.a #7	ENSGT00940000173884	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000163587.a.b.a.d.b	ENSGT01000000214434.B.a.a	ENSGT00590000083134.a.a	ENSGT00940000160941	ENSGT00390000016655.a.a.b	ENSGT00940000169295	ENSGT00940000158527	ENSGT00940000163978	ENSGT00940000160585	ENSGT00940000159528	ENSGT01040000240539.b	ENSGT00390000011864	ENSGT01050000244937.a.a	ENSGT00390000010170.a.b	ENSGT00390000003338
Euteleosteomorpha	ANCESTRAL SPECIES	29	ENSGT00940000158231.k	ENSGT00940000158406	ENSGT00510000051617	ENSGT00940000155131	ENSGT00390000011821 #21	ENSGT00940000157240 #9	ENSGT00940000159245 #10	ENSGT00940000155587.a.b #11	ENSGT00390000012174 #12	ENSGT00390000008902.kb	ENSGT00390000012196 #13	ENSGT00940000159505 #14	ENSGT00940000158589.b.a #7	ENSGT00940000173884	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00940000154486.b.b.a.b	ENSGT00940000154486.b.a.a.b.e.a.a.a	ENSGT00390000016151	ENSGT00510000049102	ENSGT00940000160532.h	ENSGT00390000013151.a.a.b	ENSGT00940000160639.b.a.b.a	ENSGT00940000181338	ENSGT00950000182860.a.b.b	ENSGT00390000006631	ENSGT00950000183208.A.c.b	ENSGT00940000157233.d	ENSGT00940000158526	ENSGT00940000158539.a
Acanthomorphata	ANCESTRAL SPECIES	51	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000154610.e.a	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00940000154486.b.b.a.b	ENSGT00940000154486.b.a.a.b.e.a.a.a	ENSGT00390000016151	ENSGT00510000049102	ENSGT00940000160532.h	ENSGT00390000013151.a.a.b	ENSGT00940000160639.b.a.b.a	ENSGT00940000181338	ENSGT00950000182860.a.b.b	ENSGT00390000006631	ENSGT00950000183208.A.c.b	ENSGT00940000157233.d	ENSGT00940000158526	ENSGT00940000158539.a
Cod	MODERN SPECIES	12	ENSGMOG00000023772	ENSGMOG00000000660	ENSGMOG00000006042	ENSGMOG00000003612	ENSGMOG00000003590	ENSGMOG00000003578	ENSGMOG00000001333	ENSGMOG00000001477	ENSGMOG00000001491	ENSGMOG00000019956	gmppaa (ENSGMOG00000012792)	ENSGMOG00000012752	asic4a (ENSGMOG00000012740)	CHPF (ENSGMOG00000012737)	ENSGMOG00000012733	ENSGMOG00000012727 #22	ENSGMOG00000013984	ENSGMOG00000013967	SYTL5 (ENSGMOG00000003889)	srpx (ENSGMOG00000003854)	ENSGMOG00000003765	OTC (ENSGMOG00000003743)	gpr161b (ENSGMOG00000003731)	ENSGMOG00000003651	mpc2b (ENSGMOG00000003638)	RPL24 (ENSGMOG00000003627)	ENSGMOG00000027269	ENSGMOG00000027391	nxpe3 (ENSGMOG00000022197)	nxpe3 (ENSGMOG00000029131)	me3 (ENSGMOG00000011631)
Euacanthomorphacea	ANCESTRAL SPECIES	35	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000154610.e.a	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00940000154486.b.b.a.b	ENSGT00940000154486.b.a.a.b.e.a.a.a	ENSGT00390000016151	ENSGT00510000049102	ENSGT00940000160532.h
Percomorphaceae	ANCESTRAL SPECIES	29	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e	ENSGT00940000158239.a.a	ENSGT00940000155861.C.f
Tiger tail seahorse	MODERN SPECIES	313	NXPH2 (ENSHCOG00000019064)	spoplb (ENSHCOG00000019050)	HNMT (ENSHCOG00000019039)	hnmt (ENSHCOG00000019017)	THSD7B (ENSHCOG00000018994)	cxcr4a (ENSHCOG00000018981)	dars1 (ENSHCOG00000018964)	ENSHCOG00000018915	pnkd (ENSHCOG00000018894)	gmppaa (ENSHCOG00000018883)	ENSHCOG00000018849	ENSHCOG00000018842	asic4a (ENSHCOG00000018829)	CHPF (ENSHCOG00000018799)	pdxka (ENSHCOG00000018782)	agpat3 (ENSHCOG00000018746) #22	ENSHCOG00000018719	ENSHCOG00000018675	ENSHCOG00000018666	ENSHCOG00000018646	ENSHCOG00000018634	ENSHCOG00000018620	fzd7b (ENSHCOG00000018538)	ALS2 (ENSHCOG00000018508)	MRAS (ENSHCOG00000018456)	tmem177 (ENSHCOG00000018441)	ptpn4a (ENSHCOG00000018430)	epb41l5 (ENSHCOG00000018374)	nrp2b (ENSHCOG00000018329)	ENSHCOG00000018273	ENSHCOG00000018260
Percomorphaceae_B	ANCESTRAL SPECIES	17	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183023.A.e.b	ENSGT00950000183048.b.b.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051
Ovalentaria	ANCESTRAL SPECIES	14	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183023.A.e.b	ENSGT00950000183048.b.b.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051
Ovalentaria_B	ANCESTRAL SPECIES	12	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183048.b.b.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051	ENSGT00940000154389.a
Pomacentridae	ANCESTRAL SPECIES	17	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183048.b.b.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00390000016051.b	ENSGT00940000159552	ENSGT00390000006051	ENSGT00940000154389.a
Pomacentridae_A	ANCESTRAL SPECIES	14	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183048.b.b.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00390000016051.b	ENSGT00940000159552	ENSGT00390000006051	ENSGT00940000154389.a
Amphiprion	ANCESTRAL SPECIES	8	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a.g	ENSGT00950000183023.A.f.a.a.a.h.b	ENSGT01030000234640.a.a.c.a.kb	ENSGT01030000234640.a.a.c.a.lb	ENSGT00950000183023.A.e.a	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00390000016051.b	ENSGT00940000159552	ENSGT00390000006051
Orange clownfish	MODERN SPECIES	3	NXPH2 (ENSAPEG00000011318)	spoplb (ENSAPEG00000011324)	HNMT (ENSAPEG00000011351)	hnmt (ENSAPEG00000011365)	THSD7B (ENSAPEG00000011397)	cxcr4a (ENSAPEG00000011520)	dars1 (ENSAPEG00000011547)	TMBIM1 (ENSAPEG00000011612)	pnkd (ENSAPEG00000011710)	gmppaa (ENSAPEG00000011726)	ENSAPEG00000011797	ENSAPEG00000011810	asic4a (ENSAPEG00000011839)	CHPF (ENSAPEG00000011882)	pdxka (ENSAPEG00000011906)	agpat3 (ENSAPEG00000011978) #22	ENSAPEG00000012003	ENSAPEG00000012020	ENSAPEG00000012079	ENSAPEG00000012110	ENSAPEG00000012126	ENSAPEG00000012161	ENSAPEG00000012181	ENSAPEG00000012190	ENSAPEG00000012219	fzd7b (ENSAPEG00000012268)	ALS2 (ENSAPEG00000012283)	SERP2 (ENSAPEG00000012407)	tsc22d1 (ENSAPEG00000012423)	gtf2f2b (ENSAPEG00000012444)	kctd4 (ENSAPEG00000012458)
Clown anemonefish	MODERN SPECIES	620																agpat3 (ENSAOCG00000011262) #22	ENSAOCG00000011237
Spiny chromis	MODERN SPECIES	1569													asic4b (ENSAPOG00000006339)	CHPF (ENSAPOG00000006377)	pdxka (ENSAPOG00000006426)	agpat3 (ENSAPOG00000006485) #22	ENSAPOG00000006502	ENSAPOG00000006534	ENSAPOG00000006570	ENSAPOG00000006583	fzd7b (ENSAPOG00000006603)
Bicolor damselfish	MODERN SPECIES	327				HNMT (ENSSPAG00000006872)	hnmt (ENSSPAG00000006885)	THSD7B (ENSSPAG00000006929)	cxcr4a (ENSSPAG00000006989)	dars1 (ENSSPAG00000007022)	TMBIM1 (ENSSPAG00000007061)	pnkd (ENSSPAG00000007083)	gmppaa (ENSSPAG00000007113)	ENSSPAG00000007186	asic4a (ENSSPAG00000007214)	CHPF (ENSSPAG00000007363)	pdxka (ENSSPAG00000007386)	agpat3 (ENSSPAG00000007464) #22	ENSSPAG00000007496	ENSSPAG00000007514	ENSSPAG00000007558	ENSSPAG00000007590	ENSSPAG00000007614	ENSSPAG00000007642	fzd7b (ENSSPAG00000007646)	ENSSPAG00000007653	SERP2 (ENSSPAG00000007674)	ENSSPAG00000007686	tsc22d1 (ENSSPAG00000007688)	gtf2f2b (ENSSPAG00000007713)	kctd4 (ENSSPAG00000007959)	tpt1 (ENSSPAG00000007967)	RANBP2 (ENSSPAG00000008000)
Cichlidae	ANCESTRAL SPECIES	14	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT01030000234748	ENSGT00940000157018	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a.p.b.a	ENSGT00950000183023.A.f.a.b.a.a.a.p.b.b	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183048.b.b.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051	ENSGT00940000154389.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	15	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT01030000234748	ENSGT00940000157018	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00950000183023.A.f.a.b.a.a.a.p.b.a.b	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a.p.b.a.a.b	ENSGT00950000183023.A.f.a.b.a.a.a.p.b.b	ENSGT00950000183023.A.f.a.a.a.e.a	ENSGT00950000183023.A.f.a.a.a.f.b.a	ENSGT00950000183023.A.f.a.a.a.f.a.b	ENSGT00950000183023.A.f.a.a.a.f.b.b	ENSGT00950000183023.A.f.a.a.a.e.b	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183048.b.b.b.c.a.b.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a
Nile tilapia	MODERN SPECIES	7	NXPH2 (ENSONIG00000004436)	spoplb (ENSONIG00000004430)	HNMT (ENSONIG00000004429)	hnmt (ENSONIG00000004424)	THSD7B (ENSONIG00000004411)	dars1 (ENSONIG00000004402)	cxcr4a (ENSONIG00000004410)	TMBIM1 (ENSONIG00000004393)	pnkd (ENSONIG00000004389)	gmppaa (ENSONIG00000004381)	ENSONIG00000031518	ENSONIG00000032910	asic4a (ENSONIG00000004379)	chpf (ENSONIG00000031746)	pdxka (ENSONIG00000004377)	agpat3 (ENSONIG00000004371) #22	ENSONIG00000029673	ENSONIG00000028251	ENSONIG00000032355	ENSONIG00000041688	ENSONIG00000035989	ENSONIG00000038917	ENSONIG00000032188	ENSONIG00000037501	ENSONIG00000038658	ENSONIG00000027158	ENSONIG00000036012	ENSONIG00000043036	ENSONIG00000035483	ENSONIG00000031729	ENSONIG00000033283
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	14	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT01030000234748	ENSGT00940000157018	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00950000183023.A.f.a.b.a.a.a.p.b.a.b	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a.p.b.b	ENSGT00950000183023.A.f.a.a.a.e.a	ENSGT00950000183023.A.f.a.a.a.f.b.a	ENSGT00950000183023.A.f.a.a.a.f.a.b	ENSGT00950000183023.A.f.a.a.a.f.b.b	ENSGT00950000183023.A.f.a.a.a.e.b	ENSGT01030000234640.a.a.c.a	ENSGT00950000183048.b.b.b.c.a.a.b.a	ENSGT00950000183023.A.e.a	ENSGT00950000183048.b.b.b.c.a.b.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a
Haplochromini	ANCESTRAL SPECIES	19	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT01030000234748	ENSGT00940000157018	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00950000183023.A.f.a.b.a.a.a.p.b.a.b	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a.p.b.b	ENSGT00950000183023.A.f.a.a.a.e.a	ENSGT00950000183023.A.f.a.a.a.f.b.a	ENSGT00950000183023.A.f.a.a.a.f.a.b	ENSGT00950000183023.A.f.a.a.a.f.b.b	ENSGT00950000183023.A.f.a.a.a.e.b	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183048.b.b.b.c.a.b.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b
Haplochromini_A	ANCESTRAL SPECIES	19	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT01030000234748	ENSGT00940000157018	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00950000183023.A.f.a.b.a.a.a.p.b.a.b	ENSGT00950000183023.A.f.a.b.a.a.a.p.b.a.a.a	ENSGT00950000183023.A.f.a.a.a.f.a.a	ENSGT00950000183023.A.f.a.b.a.a.a.p.b.b	ENSGT00950000183023.A.f.a.a.a.e.a	ENSGT00950000183023.A.f.a.a.a.f.b.a	ENSGT00950000183023.A.f.a.a.a.f.a.b	ENSGT00950000183023.A.f.a.a.a.f.b.b	ENSGT00950000183023.A.f.a.a.a.e.b	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183048.b.b.b.c.a.a.a.a.b	ENSGT00950000183048.b.b.b.c.a.a.a.a.a	ENSGT00950000183048.b.b.b.c.a.b.b	ENSGT00940000158239.a.a.b
Haplochromini_B	ANCESTRAL SPECIES	39	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT01030000234748	ENSGT00940000157018	ENSGT00940000176971.c.d	ENSGT00950000182996.b.b.c.b.b.a.b.d.a.b	ENSGT00950000182996.b.b.c.b.b.a.b.d.a.a	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00950000183023.A.f.a.b.a.a.a.o	ENSGT00950000183023.A.f.a.a.a.f.a.a	ENSGT00950000183023.A.f.a.b.a.a.a.p.b.b.c.b.a.b.b.a	ENSGT00950000183023.A.f.a.b.a.a.a.p.b.b.c.a.a	ENSGT00950000183023.A.f.a.b.a.a.a.p.b.b.c.b.a.a.b.b
Eastern happy	MODERN SPECIES	7	hnmt (ENSACLG00000021849)	ENSACLG00000021834	THSD7B (ENSACLG00000021759)	cxcr4a (ENSACLG00000021741)	TMBIM1 (ENSACLG00000021718)	dars1 (ENSACLG00000021690)	pnkd (ENSACLG00000021665)	ENSACLG00000021654	gmppaa (ENSACLG00000021605)	ENSACLG00000021575	ENSACLG00000021532	ENSACLG00000021487	asic4a (ENSACLG00000021434)	CHPF (ENSACLG00000021414)	pdxka (ENSACLG00000021373)	agpat3 (ENSACLG00000021331) #22	ENSACLG00000021324	ENSACLG00000021321	ENSACLG00000021301	ENSACLG00000021256	ENSACLG00000021232	ENSACLG00000021211	ENSACLG00000021166	ENSACLG00000021142	ENSACLG00000021112	ENSACLG00000021094	ENSACLG00000021087	ENSACLG00000021057	ENSACLG00000021020	ENSACLG00000020995	ENSACLG00000020982
Zebra mbuna	MODERN SPECIES	1098	HNMT (ENSMZEG00005012675)	hnmt (ENSMZEG00005012631)	THSD7B (ENSMZEG00005012606)	cxcr4a (ENSMZEG00005012580)	dars1 (ENSMZEG00005012535)	TMBIM1 (ENSMZEG00005012526)	pnkd (ENSMZEG00005012514)	ENSMZEG00005012505	gmppaa (ENSMZEG00005012445)	ENSMZEG00005012418	ENSMZEG00005012394	ENSMZEG00005012376	asic4a (ENSMZEG00005012361)	CHPF (ENSMZEG00005012350)	pdxka (ENSMZEG00005012329)	agpat3 (ENSMZEG00005012307) #22	ENSMZEG00005012303	ENSMZEG00005012289	ENSMZEG00005012277	ENSMZEG00005012262	ENSMZEG00005012254	ENSMZEG00005012245	ENSMZEG00005012233	ENSMZEG00005012221	ENSMZEG00005012213	ENSMZEG00005012200	ENSMZEG00005012178	ENSMZEG00005012161	ENSMZEG00005012153	ENSMZEG00005012145	ENSMZEG00005012138
P. nyererei	MODERN SPECIES	458	NXPH2 (ENSPNYG00000016633)	spoplb (ENSPNYG00000016589)	HNMT (ENSPNYG00000016568)	hnmt (ENSPNYG00000016548)	THSD7B (ENSPNYG00000016476)	ENSPNYG00000016450	cxcr4a (ENSPNYG00000016443)	dars1 (ENSPNYG00000016403)	TMBIM1 (ENSPNYG00000016371)	pnkd (ENSPNYG00000016327)	ENSPNYG00000016303	gmppaa (ENSPNYG00000016247)	asic4a (ENSPNYG00000016210)	CHPF (ENSPNYG00000016189)	pdxka (ENSPNYG00000016147)	agpat3 (ENSPNYG00000016113) #22	ENSPNYG00000016085	ENSPNYG00000016073	ENSPNYG00000016037	ENSPNYG00000016025	ENSPNYG00000015991
Burton s mouthbrooder	MODERN SPECIES	298	ugt1b1 (ENSHBUG00000001225)	NXPH2 (ENSHBUG00000001226)	spoplb (ENSHBUG00000001227)	HNMT (ENSHBUG00000001228)	hnmt (ENSHBUG00000001229)	THSD7B (ENSHBUG00000001230)	cxcr4a (ENSHBUG00000001231)	dars1 (ENSHBUG00000001232)	TMBIM1 (ENSHBUG00000001233)	pnkd (ENSHBUG00000001234)	ENSHBUG00000001235	gmppaa (ENSHBUG00000001236)	asic4a (ENSHBUG00000001237)	CHPF (ENSHBUG00000001238)	pdxka (ENSHBUG00000001239)	agpat3 (ENSHBUG00000001240) #22	ENSHBUG00000001241	ENSHBUG00000001242
Lyretail cichlid	MODERN SPECIES	350	ugt1b1 (ENSNBRG00000020375)	NXPH2 (ENSNBRG00000020368)	spoplb (ENSNBRG00000020337)	ENSNBRG00000020316	hnmt (ENSNBRG00000020241)	THSD7B (ENSNBRG00000020121)	cxcr4a (ENSNBRG00000020093)	dars1 (ENSNBRG00000020068)	TMBIM1 (ENSNBRG00000020048)	pnkd (ENSNBRG00000020031)	ENSNBRG00000020021	gmppaa (ENSNBRG00000019989)	asic4a (ENSNBRG00000019966)	CHPF (ENSNBRG00000019953)	pdxka (ENSNBRG00000019937)	agpat3 (ENSNBRG00000019907) #22	ENSNBRG00000019875	ENSNBRG00000019863	ENSNBRG00000019830
Midas cichlid	MODERN SPECIES	202											gmppaa (ENSACIG00000009653)	ENSACIG00000009683	asic4a (ENSACIG00000009693)	CHPF (ENSACIG00000009720)	pdxka (ENSACIG00000009733)	agpat3 (ENSACIG00000009771) #22	ENSACIG00000009796	ENSACIG00000009811
Atherinomorphae	ANCESTRAL SPECIES	13	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT01030000234748	ENSGT00940000157018	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183023.A.e.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051	ENSGT00940000154389.a
Oryzias	ANCESTRAL SPECIES	10	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00390000008812.a.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00390000001856	ENSGT00940000155126.s.b	ENSGT00940000166348	ENSGT00950000183214.a.b.a.b.f.a	ENSGT00940000155270.i.a	ENSGT00940000156332	ENSGT00940000157211.l	ENSGT00390000010354	ENSGT00390000011821 #21	ENSGT00940000159245 #10	ENSGT00390000012174 #12
Oryzias_b	ANCESTRAL SPECIES	40	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT01030000234748	ENSGT00940000157018	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00390000008812.a.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00390000001856	ENSGT00940000155126.s.b	ENSGT00940000166348	ENSGT00950000183214.a.b.a.b.f.a	ENSGT00940000155270.i.a	ENSGT00940000156332	ENSGT00940000157211.l	ENSGT00390000010354	ENSGT00390000011821 #21	ENSGT00940000159245 #10	ENSGT00390000012174 #12
Indian medaka	MODERN SPECIES	18	NXPH2 (ENSOMEG00000015619)	spoplb (ENSOMEG00000015644)	ENSOMEG00000015657	HNMT (ENSOMEG00000015670)	hnmt (ENSOMEG00000015708)	THSD7B (ENSOMEG00000015867)	cxcr4a (ENSOMEG00000015896)	dars1 (ENSOMEG00000015997)	TMBIM1 (ENSOMEG00000016060)	pnkd (ENSOMEG00000016106)	ENSOMEG00000016114	gmppaa (ENSOMEG00000016142)	asic4a (ENSOMEG00000016180)	CHPF (ENSOMEG00000016218)	pdxka (ENSOMEG00000016303)	agpat3 (ENSOMEG00000016351) #22	ENSOMEG00000016384	cdk5r2b (ENSOMEG00000016402)	fev (ENSOMEG00000016410)	cryba2b (ENSOMEG00000016427)	umps (ENSOMEG00000016459)	fn1a (ENSOMEG00000016544)	ENSOMEG00000016575	ENSOMEG00000016682	ENSOMEG00000016701	nrp2b (ENSOMEG00000016727)	epb41l5 (ENSOMEG00000016756)	ENSOMEG00000016774	ptpn4a (ENSOMEG00000016814)	tmem177 (ENSOMEG00000016831)	ENSOMEG00000016910 #21
Javanese ricefish	MODERN SPECIES	13	NXPH2 (ENSOJAG00000023175)	SPOPL (ENSOJAG00000023187)	HNMT (ENSOJAG00000023228)	hnmt (ENSOJAG00000023238)	THSD7B (ENSOJAG00000023324)	ENSOJAG00000023450	cxcr4a (ENSOJAG00000023451)	dars1 (ENSOJAG00000023468)	ENSOJAG00000023512	pnkd (ENSOJAG00000023519)	ENSOJAG00000023534	asic4a (ENSOJAG00000023538)	ENSOJAG00000023541	CHPF (ENSOJAG00000023548)	PDXK (ENSOJAG00000023552)	agpat3 (ENSOJAG00000023558) #22	ENSOJAG00000023565	ENSOJAG00000023567	fev (ENSOJAG00000023571)	cryba2b (ENSOJAG00000023576)	ENSOJAG00000023783	ENSOJAG00000023785	ENSOJAG00000023787	nrp2b (ENSOJAG00000023793)	ENSOJAG00000023800	epb41l5 (ENSOJAG00000023802)	ENSOJAG00000023812	tmem177 (ENSOJAG00000023817)	ENSOJAG00000023821 #21	slc37a1 (ENSOJAG00000023831) #10	ENSOJAG00000023837
Oryzias_a	ANCESTRAL SPECIES	58	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000008812.a.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00390000001856	ENSGT00940000155126.s.b	ENSGT00940000166348	ENSGT00950000183214.a.b.a.b.f.a	ENSGT00940000155270.i.a	ENSGT00940000156332	ENSGT00940000157211.l	ENSGT00390000010354	ENSGT00940000159245 #10	ENSGT00390000012174 #12	ENSGT00390000008902.kb	ENSGT00940000175678
Japanese Medaka HdrR	MODERN SPECIES	13	hnmt (ENSORLG00000027332)	hnmt (ENSORLG00000020490)	THSD7B (ENSORLG00000020495)	ENSORLG00000028488	ENSORLG00000024098	cxcr4a (ENSORLG00000029079)	dars1 (ENSORLG00000026356)	TMBIM1 (ENSORLG00000020503)	pnkd (ENSORLG00000026276)	gmppaa (ENSORLG00000020513)	ENSORLG00000025186	asic4a (ENSORLG00000020519)	ENSORLG00000029901	CHPF (ENSORLG00000020522)	pdxka (ENSORLG00000020526)	agpat3 (ENSORLG00000020534) #22	cdk5r2b (ENSORLG00000020537)	fev (ENSORLG00000029519)	cryba2b (ENSORLG00000020544)	umps (ENSORLG00000020552)	fn1a (ENSORLG00000020577)	ENSORLG00000028926	ENSORLG00000029898	ENSORLG00000023693	ENSORLG00000022281	ENSORLG00000029727	ENSORLG00000026352	ENSORLG00000021788	ENSORLG00000025687	ENSORLG00000022794	ENSORLG00000028758
Chinese medaka	MODERN SPECIES	1113														CHPF (ENSOSIG00000012568)	pdxka (ENSOSIG00000012569)	agpat3 (ENSOSIG00000012573) #22	cdk5r2b (ENSOSIG00000012576)	fev (ENSOSIG00000012577)	cryba2b (ENSOSIG00000012579)	umps (ENSOSIG00000012582)	ENSOSIG00000015474	ENSOSIG00000015475
Cyprinodontiformes	ANCESTRAL SPECIES	15	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT01030000234748	ENSGT00940000157018	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183023.A.e.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051	ENSGT00940000178293
Aplocheiloidei	ANCESTRAL SPECIES	6	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT01030000234748	ENSGT00940000157018	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051	ENSGT00940000154389.a	ENSGT00940000153518.d.b.a.a
Mangrove rivulus	MODERN SPECIES	54	ugt1b1 (ENSKMAG00000015328)	NXPH2 (ENSKMAG00000015309)	spoplb (ENSKMAG00000015248)	HNMT (ENSKMAG00000015222)	hnmt (ENSKMAG00000015177)	THSD7B (ENSKMAG00000015079)	cxcr4a (ENSKMAG00000015064)	dars1 (ENSKMAG00000014958)	ENSKMAG00000014903	pnkd (ENSKMAG00000014879)	ENSKMAG00000014865	gmppaa (ENSKMAG00000014796)	asic4a (ENSKMAG00000014750)	CHPF (ENSKMAG00000014718)	pdxka (ENSKMAG00000014678)	agpat3 (ENSKMAG00000014631) #22	ENSKMAG00000014605	ENSKMAG00000014580	ENSKMAG00000014550	ENSKMAG00000014525	ENSKMAG00000014509
Turquoise killifish	MODERN SPECIES	1623	ENSNFUG00015023756	DARS (ENSNFUG00015023759)	cxcr4a (ENSNFUG00015023775)	TMBIM1 (ENSNFUG00015023777)	pnkd (ENSNFUG00015023779)	GMPPAA (ENSNFUG00015023787)	ENSNFUG00015023875	ENSNFUG00015023879	ENSNFUG00015023882	ENSNFUG00015023884	ENSNFUG00015023886	ENSNFUG00015023890	ASIC4 (ENSNFUG00015023901)	CHPFA (ENSNFUG00015023919)	pdxka (ENSNFUG00015023923)	AGPAT3 (ENSNFUG00015023944) #22	ENSNFUG00015023950	ENSNFUG00015023952	ENSNFUG00015023953	ENSNFUG00015023955	ENSNFUG00015023958	ENSNFUG00015023961	ENSNFUG00015004783	fzd7b (ENSNFUG00015004789)	ALS2 (ENSNFUG00015004847)	SERP2 (ENSNFUG00015004953)	zgc:65895 (ENSNFUG00015004966)	tsc22d1 (ENSNFUG00015004972)	KCTD4 (ENSNFUG00015004978)	gtf2f2b (ENSNFUG00015004982)	ENSNFUG00015004998
Cyprinodontoidei	ANCESTRAL SPECIES	13	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT01030000234748	ENSGT00940000157018	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183023.A.e.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051	ENSGT00940000178293	ENSGT00940000154389.a
NAME_4	ANCESTRAL SPECIES	131													ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183023.A.e.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051	ENSGT00940000178293	ENSGT00940000154389.a	ENSGT00940000153518.d.b.a.a
Mummichog	MODERN SPECIES	410													asic4a (ENSFHEG00000011782)	CHPF (ENSFHEG00000011798)	pdxka (ENSFHEG00000012130)	agpat3 (ENSFHEG00000012194) #22	ENSFHEG00000012232	ENSFHEG00000012252	ENSFHEG00000012259	ENSFHEG00000012268	ENSFHEG00000012302	ENSFHEG00000012318	ENSFHEG00000012338
Sheepshead minnow	MODERN SPECIES	118													asic4a (ENSCVAG00000016801)	CHPF (ENSCVAG00000016806)	PDXK (ENSCVAG00000016838)	agpat3 (ENSCVAG00000016855) #22	ENSCVAG00000016889	bcam (ENSCVAG00000016928)	rps19 (ENSCVAG00000016949)	cadm4 (ENSCVAG00000016999)	si:ch211-79k12.1 (ENSCVAG00000017011)	taf12 (ENSCVAG00000017061)	rab42b (ENSCVAG00000017064)	ENSCVAG00000017072	cited4b (ENSCVAG00000017089)	SCMH1 (ENSCVAG00000017111)	ENSCVAG00000017124	med18 (ENSCVAG00000017138)	cyp4t8 (ENSCVAG00000017148)	ppp1r8b (ENSCVAG00000017182)	THEMIS2 (ENSCVAG00000017238)
Poeciliinae	ANCESTRAL SPECIES	25	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT01030000234748	ENSGT00940000157018	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a.i.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183023.A.e.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051	ENSGT00940000154389.a	ENSGT00940000153518.d.b.a.a
Poecilia	ANCESTRAL SPECIES	13	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT01030000234748	ENSGT00940000157018	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a.i.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183023.A.e.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051	ENSGT00940000154389.a	ENSGT00940000153518.d.b.a.a
NAME_6	ANCESTRAL SPECIES	80	ENSGT00910000144271.C.k.a	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953.m	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a.i.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183023.A.e.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051	ENSGT00940000154389.a	ENSGT00940000153518.d.b.a.a
Amazon molly	MODERN SPECIES	335														CHPF (ENSPFOG00000008350)	pdxka (ENSPFOG00000008244)	agpat3 (ENSPFOG00000008059) #22	ENSPFOG00000020194	ENSPFOG00000008045	or64d1 (ENSPFOG00000022223)	ENSPFOG00000021955	ENSPFOG00000020193	fzd7b (ENSPFOG00000020192)	ENSPFOG00000007870	SERP2 (ENSPFOG00000007861)	zgc:65895 (ENSPFOG00000007803)	kctd4 (ENSPFOG00000020191)	kctd4 (ENSPFOG00000020190)	ENSPFOG00000007771	tpt1 (ENSPFOG00000007677)	RANBP2 (ENSPFOG00000007377)	ENSPFOG00000007252
Sailfin molly	MODERN SPECIES	389														CHPF (ENSPLAG00000012132)	pdxka (ENSPLAG00000012167)	agpat3 (ENSPLAG00000012197) #22	ENSPLAG00000012204	ENSPLAG00000012228	ENSPLAG00000012248	ENSPLAG00000012252	ENSPLAG00000012264	fzd7b (ENSPLAG00000012273)	ALS2 (ENSPLAG00000012315)	SERP2 (ENSPLAG00000012337)	tsc22d1 (ENSPLAG00000012340)	kctd4 (ENSPLAG00000012351)	gtf2f2b (ENSPLAG00000012356)	tpt1 (ENSPLAG00000012361)	RANBP2 (ENSPLAG00000012373)
Guppy	MODERN SPECIES	450	spoplb (ENSPREG00000014612)	HNMT (ENSPREG00000014601)	hnmt (ENSPREG00000014586)	ENSPREG00000014576	THSD7B (ENSPREG00000014519)	cxcr4a (ENSPREG00000014489)	dars1 (ENSPREG00000014466)	TMBIM1 (ENSPREG00000014447)	pnkd (ENSPREG00000014434)	ENSPREG00000014419	gmppaa (ENSPREG00000014364)	asic4a (ENSPREG00000014248)	ENSPREG00000014242	CHPF (ENSPREG00000014235)	pdxka (ENSPREG00000014190)	agpat3 (ENSPREG00000014169) #22	ENSPREG00000014153	ENSPREG00000014140	or64d1 (ENSPREG00000014132)	ENSPREG00000014109	ENSPREG00000014087	fzd7b (ENSPREG00000014079)	ALS2 (ENSPREG00000014013)	zgc:65895 (ENSPREG00000013994)	tsc22d1 (ENSPREG00000013988)	ENSPREG00000013982	kctd4 (ENSPREG00000013980)	gtf2f2b (ENSPREG00000013804)	tpt1 (ENSPREG00000013599)	RANBP2 (ENSPREG00000013331)	ENSPREG00000013239
Platyfish	MODERN SPECIES	21	ENSXMAG00000023781	ugt1b1 (ENSXMAG00000004967)	NXPH2 (ENSXMAG00000019671)	spoplb (ENSXMAG00000011594)	HNMT (ENSXMAG00000011623)	hnmt (ENSXMAG00000028051)	THSD7B (ENSXMAG00000011636)	cxcr4a (ENSXMAG00000003684)	dars1 (ENSXMAG00000003657)	TMBIM1 (ENSXMAG00000024690)	ENSXMAG00000023182	gmppaa (ENSXMAG00000003625)	asic4a (ENSXMAG00000003624)	CHPF (ENSXMAG00000003616)	PDXK (ENSXMAG00000003609)	agpat3 (ENSXMAG00000003600) #22	ENSXMAG00000020392	ENSXMAG00000003594	ENSXMAG00000027179	or64d1 (ENSXMAG00000019623)	ENSXMAG00000024839	ENSXMAG00000020391	fzd7b (ENSXMAG00000020390)	ALS2 (ENSXMAG00000003567)	ENSXMAG00000003558	tsc22d1 (ENSXMAG00000003554)	kctd4 (ENSXMAG00000020389)	gtf2f2b (ENSXMAG00000003551)	tpt1 (ENSXMAG00000028654)	RANBP2 (ENSXMAG00000003519)	ENSXMAG00000023681
Percomorphaceae_C	ANCESTRAL SPECIES	13	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183023.A.e.b	ENSGT00950000183048.b.b.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051
Percomorphaceae_D	ANCESTRAL SPECIES	12	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183023.A.e.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00390000006051	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00940000154389.a	ENSGT00940000153518.d.b.b.w.a
Anabantaria	ANCESTRAL SPECIES	14	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT01030000234748	ENSGT00940000157018	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00390000006051	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00940000154389.a	ENSGT00940000153518.d.b.b.w.a	ENSGT00950000183078.a
Zig-zag eel	MODERN SPECIES	13	NXPH2 (ENSMAMG00000016931)	SPOPL (ENSMAMG00000016938)	hnmt (ENSMAMG00000016949)	hnmt (ENSMAMG00000028155)	hnmt (ENSMAMG00000016962)	THSD7B (ENSMAMG00000017095)	cxcr4b (ENSMAMG00000017149)	dars1 (ENSMAMG00000017160)	ENSMAMG00000017194	ENSMAMG00000027130	gmppaa (ENSMAMG00000017226)	ENSMAMG00000017283	asic4a (ENSMAMG00000017296)	CHPF (ENSMAMG00000027984)	ENSMAMG00000017323	ENSMAMG00000017353 #22	ENSMAMG00000024930	ENSMAMG00000025171	ENSMAMG00000017484	ENSMAMG00000017553	ENSMAMG00000024374	ENSMAMG00000027536	ENSMAMG00000017610	ENSMAMG00000027227	ENSMAMG00000025125	ENSMAMG00000017668	ENSMAMG00000027750	ENSMAMG00000026622	ENSMAMG00000027484	ENSMAMG00000026289	ENSMAMG00000028534
Anabantoidei	ANCESTRAL SPECIES	13	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT01030000234748	ENSGT00940000157018	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00940000155861.C.f	ENSGT00390000006051	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00940000154389.a	ENSGT00940000153518.d.b.b.w.a	ENSGT00940000153518.d.b.a.a	ENSGT00390000012589	ENSGT00950000183078.a	ENSGT00690000101915.i.a	ENSGT00940000161312
Climbing perch	MODERN SPECIES	12	ENSATEG00000028653	ENSATEG00000026833	NXPH2 (ENSATEG00000003052)	SPOPL (ENSATEG00000003040)	HNMT (ENSATEG00000003011)	hnmt (ENSATEG00000002987)	THSD7B (ENSATEG00000002844)	cxcr4b (ENSATEG00000002835)	dars1 (ENSATEG00000002761)	ENSATEG00000002727	ENSATEG00000002712	GMPPA (ENSATEG00000002668)	asic4a (ENSATEG00000002639)	CHPF (ENSATEG00000025814)	ENSATEG00000002568	ENSATEG00000002556 #22	ENSATEG00000002526	ENSATEG00000002509	ENSATEG00000027556	ENSATEG00000002439	ENSATEG00000025725	ENSATEG00000028963	ENSATEG00000029980	ENSATEG00000029854	ENSATEG00000026483	ENSATEG00000028331	ENSATEG00000027586	ENSATEG00000027532	ENSATEG00000026565	ENSATEG00000026073	ENSATEG00000027432
Siamese fighting fish	MODERN SPECIES	11	NXPH2 (ENSBSLG00000019840)	spoplb (ENSBSLG00000019786)	HNMT (ENSBSLG00000019759)	ENSBSLG00000019479	hnmt (ENSBSLG00000019428)	THSD7B (ENSBSLG00000018975)	cxcr4a (ENSBSLG00000018918)	TMBIM1 (ENSBSLG00000018889)	pnkd (ENSBSLG00000018723)	ENSBSLG00000018719	gmppaa (ENSBSLG00000018682)	dars1 (ENSBSLG00000018054)	asic4a (ENSBSLG00000017887)	CHPF (ENSBSLG00000017868)	pdxka (ENSBSLG00000017152)	agpat3 (ENSBSLG00000017041) #22	ENSBSLG00000017021	ENSBSLG00000017005	ENSBSLG00000016992	ENSBSLG00000016976	ENSBSLG00000016961	ENSBSLG00000016953	ENSBSLG00000016944	ENSBSLG00000016921	ENSBSLG00000016912	ENSBSLG00000016904	ENSBSLG00000016885	ENSBSLG00000016873	ENSBSLG00000016865	ENSBSLG00000016857	ENSBSLG00000016848
Carangaria	ANCESTRAL SPECIES	12	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183023.A.e.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00390000006051	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00940000154389.a.o.a	ENSGT00940000153518.d.b.b.w.a
Carangaria_A	ANCESTRAL SPECIES	11	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00390000006051	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00940000153518.d.b.a.a	ENSGT00390000012589	ENSGT00940000154389.a.o.a	ENSGT00940000153518.d.b.b.w.a	ENSGT00950000183078.a	ENSGT00690000101915.i.a
Seriola	ANCESTRAL SPECIES	34	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00950000183023.A.f.a.b.a.a.a.a	ENSGT00950000183023.A.f.a.b.a.a.a.b	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00390000006051	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b
Greater amberjack	MODERN SPECIES	21	ugt1b1 (ENSSDUG00000012351)	NXPH2 (ENSSDUG00000012361)	spoplb (ENSSDUG00000012367)	HNMT (ENSSDUG00000012388)	hnmt (ENSSDUG00000012396)	THSD7B (ENSSDUG00000012413)	cxcr4a (ENSSDUG00000012474)	dars1 (ENSSDUG00000012483)	TMBIM1 (ENSSDUG00000012513)	pnkd (ENSSDUG00000012538)	gmppaa (ENSSDUG00000012554)	ENSSDUG00000012634	asic4a (ENSSDUG00000012646)	CHPF (ENSSDUG00000012678)	pdxka (ENSSDUG00000012694)	agpat3 (ENSSDUG00000012729) #22	ENSSDUG00000012766	ENSSDUG00000012798	ENSSDUG00000012808	ENSSDUG00000012820	ENSSDUG00000012829	ENSSDUG00000012854	ENSSDUG00000012858	ENSSDUG00000012884	fzd7b (ENSSDUG00000012894)	ALS2 (ENSSDUG00000012907)	tpt1 (ENSSDUG00000013034)	ENSSDUG00000013051	tsc22d1 (ENSSDUG00000013067)	gtf2f2b (ENSSDUG00000013087)	kctd4 (ENSSDUG00000013143)
Yellowtail amberjack	MODERN SPECIES	2542													asic4a (ENSSLDG00000022741)	CHPF (ENSSLDG00000022733)	pdxka (ENSSLDG00000022697)	agpat3 (ENSSLDG00000022654) #22	ENSSLDG00000022616	ENSSLDG00000022590	ENSSLDG00000022571	ENSSLDG00000022554	ENSSLDG00000022546	ENSSLDG00000022529	ENSSLDG00000022516	ENSSLDG00000022505	ALS2 (ENSSLDG00000022428)	tpt1 (ENSSLDG00000022402)	ENSSLDG00000022398	tsc22d1 (ENSSLDG00000022390)	kctd4 (ENSSLDG00000022382)	gtf2f2b (ENSSLDG00000022352)
Barramundi perch	MODERN SPECIES	204	ugt1b1 (ENSLCAG00010011173)	ENSLCAG00010011175	NXPH2 (ENSLCAG00010011178)	spoplb (ENSLCAG00010011182)	HNMT (ENSLCAG00010011193)	hnmt (ENSLCAG00010011195)	THSD7B (ENSLCAG00010011213)	cxcr4a (ENSLCAG00010011228)	dars1 (ENSLCAG00010011290)	pnkd (ENSLCAG00010011550)	gmppaa (ENSLCAG00010011601)	ENSLCAG00010011644	asic4a (ENSLCAG00010011647)	CHPF (ENSLCAG00010011654)	pdxka (ENSLCAG00010011671)	agpat3 (ENSLCAG00010011701) #22	ENSLCAG00010011713	ENSLCAG00010011720	ENSLCAG00010011726	ENSLCAG00010011729	ENSLCAG00010011731	FZD7 (ENSLCAG00010011736)	ALS2 (ENSLCAG00010011744)	tpt1 (ENSLCAG00010011749)
Pleuronectoidei	ANCESTRAL SPECIES	9	ENSGT00910000144271.C	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183023.A.e.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00390000006051	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00940000154389.a.o.a	ENSGT00940000178293
Tongue sole	MODERN SPECIES	7	NXPH2 (ENSCSEG00000014974)	spoplb (ENSCSEG00000014860)	ENSCSEG00000014850	HNMT (ENSCSEG00000014836)	THSD7B (ENSCSEG00000014629)	ENSCSEG00000014599	cxcr4a (ENSCSEG00000013981)	dars1 (ENSCSEG00000013966)	ENSCSEG00000013961	pnkd (ENSCSEG00000013958)	ENSCSEG00000013951	gmppaa (ENSCSEG00000013921)	asic4a (ENSCSEG00000013878)	CHPF (ENSCSEG00000013861)	pdxka (ENSCSEG00000013844)	agpat3 (ENSCSEG00000013831) #22	ENSCSEG00000013817	ENSCSEG00000013813	ENSCSEG00000013802	ENSCSEG00000013794	ENSCSEG00000013770	ENSCSEG00000013746	ENSCSEG00000013741	ENSCSEG00000013737	fzd7b (ENSCSEG00000013735)	ENSCSEG00000013644	tpt1 (ENSCSEG00000013637)	ENSCSEG00000013630	stxbp5l (ENSCSEG00000013403)	poglut2 (ENSCSEG00000013373)	ENSCSEG00000013366
Turbot	MODERN SPECIES	5	ENSSMAG00000002168	ENSSMAG00000002426	NXPH2 (ENSSMAG00000023910)	SPOPL (ENSSMAG00000002460)	ENSSMAG00000002525	THSD7B (ENSSMAG00000002557)	CXCR4 (ENSSMAG00000006700)	dars1 (ENSSMAG00000006714)	ENSSMAG00000006792	ENSSMAG00000006812	gmppaa (ENSSMAG00000006829)	ENSSMAG00000006899	asic4a (ENSSMAG00000006912)	CHPF (ENSSMAG00000033841)	ENSSMAG00000006966	ENSSMAG00000007002 #22	ENSSMAG00000031335	ENSSMAG00000027464	ENSSMAG00000007025	ENSSMAG00000007065	ENSSMAG00000037976	ENSSMAG00000007095	ENSSMAG00000028695	ENSSMAG00000007144	ENSSMAG00000007166	tpt1 (ENSSMAG00000026887)	ENSSMAG00000007293	ENSSMAG00000037836	ENSSMAG00000023827	ENSSMAG00000007317	kctd4 (ENSSMAG00000007327)
Eupercaria	ANCESTRAL SPECIES	25	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183023.A.e.b	ENSGT00950000183048.b.b.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051
Tetraodontidae	ANCESTRAL SPECIES		ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT01030000234748	ENSGT00940000157018	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a.y.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183023.A.e.b	ENSGT00950000183048.b.b.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051	ENSGT00940000154389.a	ENSGT00940000153518.d.b.a.a
Fugu	MODERN SPECIES		ugt1b1 (ENSTRUG00000007992)	NXPH2 (ENSTRUG00000008270)	spoplb (ENSTRUG00000008272)	HNMT (ENSTRUG00000008584)	hnmt (ENSTRUG00000008598)	THSD7B (ENSTRUG00000008734)	cxcr4a (ENSTRUG00000009000)	dars1 (ENSTRUG00000009030)	TMBIM1 (ENSTRUG00000009154)	pnkd (ENSTRUG00000009399)	ENSTRUG00000021998	gmppaa (ENSTRUG00000009542)	asic4a (ENSTRUG00000009778)	CHPF (ENSTRUG00000009970)	pdxka (ENSTRUG00000010041)	agpat3 (ENSTRUG00000021005) #22	ENSTRUG00000025642	ENSTRUG00000032432	ENSTRUG00000029291	ENSTRUG00000031223	ENSTRUG00000028183	ENSTRUG00000027979	ENSTRUG00000028600	ENSTRUG00000030906	ENSTRUG00000028132	ENSTRUG00000029013	ENSTRUG00000028200	ENSTRUG00000029468	ENSTRUG00000031072	ENSTRUG00000025861	ENSTRUG00000033090
Tetraodon	MODERN SPECIES	13	UGT1A1 (ENSTNIG00000013253)	ENSTNIG00000002406	NXPH2 (ENSTNIG00000010985)	spoplb (ENSTNIG00000010986)	HNMT (ENSTNIG00000010987)	hnmt (ENSTNIG00000010988)	THSD7B (ENSTNIG00000010989)	cxcr4a (ENSTNIG00000000918)	dars1 (ENSTNIG00000010990)	ENSTNIG00000010991	pnkd (ENSTNIG00000010992)	gmppaa (ENSTNIG00000010993)	asic4a (ENSTNIG00000010994)	CHPF (ENSTNIG00000005621)	pdxka (ENSTNIG00000005620)	agpat3 (ENSTNIG00000005619) #22	ENSTNIG00000002973	ENSTNIG00000006121	ENSTNIG00000000688	ENSTNIG00000001245	ENSTNIG00000000335	ENSTNIG00000004008	ENSTNIG00000000480	ENSTNIG00000003782	fzd7b (ENSTNIG00000003781)	ALS2 (ENSTNIG00000003780)	SERP2 (ENSTNIG00000019747)	tsc22d1 (ENSTNIG00000003779)	GTF2F2 (ENSTNIG00000004440)	tpt1 (ENSTNIG00000004439)	ENSTNIG00000000318
Eupecaria_A	ANCESTRAL SPECIES	24	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183023.A.e.b	ENSGT00950000183048.b.b.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051
Ballan wrasse	MODERN SPECIES	157	zeb2a (ENSLBEG00000001366)	gtdc1 (ENSLBEG00000001335)	acvr2aa (ENSLBEG00000001277)	ENSLBEG00000001241	kif5c (ENSLBEG00000001127)	arhgap15 (ENSLBEG00000001058)	ENSLBEG00000001033	gmppaa (ENSLBEG00000001003)	pnkd (ENSLBEG00000000985)	ENSLBEG00000000971	dars1 (ENSLBEG00000000879)	cxcr4a (ENSLBEG00000000869)	asic4a (ENSLBEG00000000829)	CHPF (ENSLBEG00000000783)	pdxka (ENSLBEG00000000742)	agpat3 (ENSLBEG00000000684) #22	ENSLBEG00000000607	ENSLBEG00000000560	ENSLBEG00000000497	ENSLBEG00000000464	fzd7b (ENSLBEG00000000434)	ENSLBEG00000000340	SERP2 (ENSLBEG00000000334)	zgc:65895 (ENSLBEG00000028055)	tsc22d1 (ENSLBEG00000028045)	kctd4 (ENSLBEG00000028038)	gtf2f2b (ENSLBEG00000028025)	tpt1 (ENSLBEG00000028007)	ENSLBEG00000028002	RANBP2 (ENSLBEG00000027979)	LIMS1 (ENSLBEG00000027941)
Eupecaria_B	ANCESTRAL SPECIES	24	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183023.A.e.b	ENSGT00950000183048.b.b.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051
Perciformes	ANCESTRAL SPECIES	23	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183048.b.b.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051	ENSGT00940000154389.a
Cottioidei	ANCESTRAL SPECIES	14	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183048.b.b.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051	ENSGT00940000154389.a	ENSGT00940000153518.d.b.b.w.a
Stickleback	MODERN SPECIES	16	gzm3.3 (ENSGACG00000007370)	ugt1b1 (ENSGACG00000007337)	NXPH2 (ENSGACG00000007335)	spoplb (ENSGACG00000007330)	HNMT (ENSGACG00000007323)	hnmt (ENSGACG00000007299)	THSD7B (ENSGACG00000007289)	cxcr4a (ENSGACG00000007282)	dars1 (ENSGACG00000007146)	TMBIM1 (ENSGACG00000007137)	pnkd (ENSGACG00000007119)	gmppaa (ENSGACG00000007062)	asic4a (ENSGACG00000007052)	CHPF (ENSGACG00000007044)	pdxka (ENSGACG00000007013)	agpat3 (ENSGACG00000006982) #22	ENSGACG00000006977	ENSGACG00000006976	ENSGACG00000006974	ENSGACG00000006973	ENSGACG00000006971	ENSGACG00000006969	ENSGACG00000006966	ENSGACG00000006963	ENSGACG00000006961	ENSGACG00000006957	ENSGACG00000006952	ENSGACG00000006948	ENSGACG00000006947	ENSGACG00000006943	ENSGACG00000006941
Lumpfish	MODERN SPECIES	13	ugt1b1 (ENSCLMG00005015833)	NXPH2 (ENSCLMG00005015828)	spoplb (ENSCLMG00005015808)	HNMT (ENSCLMG00005015807)	hnmt (ENSCLMG00005015806)	THSD7B (ENSCLMG00005015800)	cxcr4a (ENSCLMG00005015798)	dars1 (ENSCLMG00005013388)	TMBIM1 (ENSCLMG00005013360)	pnkd (ENSCLMG00005013359)	ENSCLMG00005013358	gmppaa (ENSCLMG00005013345)	asic4a (ENSCLMG00005013344)	CHPF (ENSCLMG00005013343)	pdxka (ENSCLMG00005013331)	agpat3 (ENSCLMG00005013326) #22	ENSCLMG00005013324	ENSCLMG00005013322	ENSCLMG00005013319	ENSCLMG00005013318	ENSCLMG00005013317	ENSCLMG00005013315	ENSCLMG00005013314	fzd7b (ENSCLMG00005013313)	ALS2 (ENSCLMG00005013043)	SERP2 (ENSCLMG00005013036)	ENSCLMG00005013035	kctd4 (ENSCLMG00005013034)	ENSCLMG00005013029	tpt1 (ENSCLMG00005013027)	RANBP2 (ENSCLMG00005009168)
Perciformes_a	ANCESTRAL SPECIES	23	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159552	ENSGT00390000016051.b	ENSGT00390000006051	ENSGT00940000154389.a	ENSGT00940000153518.d.b.a.a	ENSGT00390000012589
Pike perch	MODERN SPECIES	57	ENSSLUG00000002304	ENSSLUG00000002294	HNMT (ENSSLUG00000002289)	hnmt (ENSSLUG00000002280)	THSD7B (ENSSLUG00000002165)	ENSSLUG00000002139	cxcr4a (ENSSLUG00000002135)	dars1 (ENSSLUG00000001741)	TMBIM1 (ENSSLUG00000001466)	pnkd (ENSSLUG00000025381)	ENSSLUG00000025377	gmppaa (ENSSLUG00000025367)	asic4a (ENSSLUG00000025338)	CHPF (ENSSLUG00000025325)	pdxka (ENSSLUG00000025317)	agpat3 (ENSSLUG00000025308) #22	ENSSLUG00000025305	ENSSLUG00000025304	ENSSLUG00000025303	fzd7b (ENSSLUG00000025301)	ENSSLUG00000025285	ENSSLUG00000025281	kctd4 (ENSSLUG00000025279)	ENSSLUG00000025275	tpt1 (ENSSLUG00000025273)	RANBP2 (ENSSLUG00000025010)	ENSSLUG00000024932	tmem223 (ENSSLUG00000024924)	GCC2 (ENSSLUG00000024921)	SLC5A7 (ENSSLUG00000024917)	CLDN14 (ENSSLUG00000024914)
Channel bull blenny	MODERN SPECIES	13	ugt1b1 (ENSCGOG00000005850)	NXPH2 (ENSCGOG00000005851)	spoplb (ENSCGOG00000005854)	HNMT (ENSCGOG00000005881)	hnmt (ENSCGOG00000005883)	THSD7B (ENSCGOG00000005888)	cxcr4a (ENSCGOG00000005904)	dars1 (ENSCGOG00000005933)	ENSCGOG00000007381	pnkd (ENSCGOG00000007384)	gmppaa (ENSCGOG00000007399)	ENSCGOG00000007919	asic4a (ENSCGOG00000007921)	CHPF (ENSCGOG00000007924)	pdxka (ENSCGOG00000007930)	agpat3 (ENSCGOG00000007961) #22	ENSCGOG00000008087	ENSCGOG00000008089	ENSCGOG00000008094	ENSCGOG00000008098	ENSCGOG00000008109	ENSCGOG00000008111	ENSCGOG00000008116	fzd7b (ENSCGOG00000008130)	ALS2 (ENSCGOG00000008155)	SERP2 (ENSCGOG00000008626)	ENSCGOG00000008635	gtf2f2b (ENSCGOG00000008637)	kctd4 (ENSCGOG00000008640)	tpt1 (ENSCGOG00000008641)	RANBP2 (ENSCGOG00000008649)
Eupecaria_C	ANCESTRAL SPECIES	24	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183023.A.e.b	ENSGT00950000183048.b.b.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00390000016051.b	ENSGT00940000159552	ENSGT00390000006051
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	24	ENSGT00940000159677.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244890.a.b.a.i.b	ENSGT00940000158887	ENSGT00940000157018	ENSGT01030000234748	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00390000003874.a.a	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000162556.A.b	ENSGT00950000183023.A.f.a.b.a.a.a	ENSGT00950000183023.A.f.a.a.a	ENSGT01030000234640.a.a.c.a	ENSGT00950000183023.A.e.a	ENSGT00950000183023.A.e.b	ENSGT00950000183048.b.b.b	ENSGT00940000158239.a.a.b	ENSGT00940000155861.C.f	ENSGT00940000162467.a.a	ENSGT00940000159144.A.e.b	ENSGT00940000159144.B	ENSGT00390000016051.b	ENSGT00940000159552	ENSGT00390000006051
European seabass	MODERN SPECIES	5	NXPH2 (ENSDLAG00005033631)	SPOPL (ENSDLAG00005021423)	HNMT (ENSDLAG00005021434)	hnmt (ENSDLAG00005021444)	THSD7B (ENSDLAG00005021466)	cxcr4b (ENSDLAG00005021633)	dars1 (ENSDLAG00005021661)	ENSDLAG00005022205	ENSDLAG00005022211	gmppaa (ENSDLAG00005022243)	ENSDLAG00005000106	ENSDLAG00005030066	asic4a (ENSDLAG00005029969)	CHPF (ENSDLAG00005029792)	ENSDLAG00005000192	ENSDLAG00005029921 #22	ENSDLAG00005000277	ENSDLAG00005033483	ENSDLAG00005000287	ENSDLAG00005000284	ENSDLAG00005031702	ENSDLAG00005028228	ENSDLAG00005000290	ENSDLAG00005000293	ENSDLAG00005002446	ENSDLAG00005010357	ENSDLAG00005034493	ENSDLAG00005002629	ENSDLAG00005030806	ENSDLAG00005032391	ENSDLAG00005003525
Large yellow croaker	MODERN SPECIES	490	ENSLCRG00005022215	NXPH2 (ENSLCRG00005009855)	spoplb (ENSLCRG00005009857)	HNMT (ENSLCRG00005009863)	hnmt (ENSLCRG00005009865)	THSD7B (ENSLCRG00005009885)	cxcr4a (ENSLCRG00005009998)	dars1 (ENSLCRG00005010015)	TMBIM1 (ENSLCRG00005011247)	pnkd (ENSLCRG00005011249)	gmppaa (ENSLCRG00005011259)	ENSLCRG00005012243	asic4a (ENSLCRG00005012245)	CHPF (ENSLCRG00005012247)	pdxka (ENSLCRG00005012248)	agpat3 (ENSLCRG00005012251) #22	ENSLCRG00005012257	ENSLCRG00005012258	ENSLCRG00005012259	ENSLCRG00005012260	ENSLCRG00005012261	ENSLCRG00005012262	ENSLCRG00005012264	ENSLCRG00005012272	ENSLCRG00005012274	ENSLCRG00005012276	ENSLCRG00005012277	ENSLCRG00005012278	ENSLCRG00005012280	ENSLCRG00005012282	ENSLCRG00005012283
Gilthead seabream	MODERN SPECIES	23	rabl3 (ENSSAUG00010021878)	gzm3.4 (ENSSAUG00010021873)	ugt1b1 (ENSSAUG00010021869)	NXPH2 (ENSSAUG00010021866)	spoplb (ENSSAUG00010021860)	ENSSAUG00010021855	THSD7B (ENSSAUG00010021619)	cxcr4a (ENSSAUG00010021600)	dars1 (ENSSAUG00010020665)	TMBIM1 (ENSSAUG00010020647)	pnkd (ENSSAUG00010020576)	gmppaa (ENSSAUG00010020571)	asic4a (ENSSAUG00010020558)	CHPF (ENSSAUG00010020555)	pdxka (ENSSAUG00010020537)	agpat3 (ENSSAUG00010020534) #22	ENSSAUG00010020533	ENSSAUG00010020531	ENSSAUG00010020529	ENSSAUG00010020528	ENSSAUG00010020526	ENSSAUG00010020524	ENSSAUG00010020522	ENSSAUG00010020521	ENSSAUG00010020520	ENSSAUG00010020519	ENSSAUG00010020518	ENSSAUG00010020517	ENSSAUG00010020516	ENSSAUG00010020515	ENSSAUG00010020514
Pinecone sodierfish	DUPLICATION
Pinecone sodierfish	MODERN SPECIES	13	NXPH2 (ENSMMDG00005016244)	spoplb (ENSMMDG00005016248)	HNMT (ENSMMDG00005016258)	hnmt (ENSMMDG00005016260)	THSD7B (ENSMMDG00005016269)	cxcr4a (ENSMMDG00005016278)	dars1 (ENSMMDG00005016293)	TMBIM1 (ENSMMDG00005017168)	pnkd (ENSMMDG00005017180)	gmppaa (ENSMMDG00005017215)	ENSMMDG00005017226	ENSMMDG00005017228	asic4a (ENSMMDG00005017231)	CHPF (ENSMMDG00005017236)	pdxka (ENSMMDG00005017253)	agpat3 (ENSMMDG00005017290) #22	ENSMMDG00005017292	ahr1b (ENSMMDG00005017321)	ahr2 (ENSMMDG00005018165)	ndufa10 (ENSMMDG00005019758)	gypc (ENSMMDG00005019761)	ENSMMDG00005019811	CNTNAP5 (ENSMMDG00005020987)	ENSMMDG00005021013	sh3bp4 (ENSMMDG00005021015)	arl4cb (ENSMMDG00005021019)	nepro (ENSMMDG00005021027)	ENSMMDG00005021029	ENSMMDG00005021030	ENSMMDG00005021033	ENSMMDG00005021036
Pinecone sodierfish	MODERN SPECIES	6	crls1 (ENSMMDG00005024634)	ENSMMDG00005024635	ENSMMDG00005024636	napba (ENSMMDG00005006966)	cdc5l (ENSMMDG00005006968)	supt3h (ENSMMDG00005006972)	ENSMMDG00005006975	ENSMMDG00005006983	gja5b (ENSMMDG00005007346)	cbr1 (ENSMMDG00005007348)	setd4 (ENSMMDG00005007350)	cryzl1 (ENSMMDG00005007352)	ITSN1 (ENSMMDG00005007355)	ENSMMDG00005007367	pdxkb (ENSMMDG00005007368)	agpat3 (ENSMMDG00005007369) #22	ENSMMDG00005007398	ENSMMDG00005007399	ppp1r1c (ENSMMDG00005007400)	nckap1 (ENSMMDG00005007441)	dusp19b (ENSMMDG00005008799)	zc3h15 (ENSMMDG00005008803)	rbm45 (ENSMMDG00005008809)	ENSMMDG00005008822	ENSMMDG00005008825	ENSMMDG00005008828	ENSMMDG00005008831	ENSMMDG00005008833	ENSMMDG00005008836	GFRA1 (ENSMMDG00005008840)	ENSMMDG00005008858
Protacanthopterygii	ANCESTRAL SPECIES	138											ENSGT00510000046499.r.a	ENSGT00940000153577.A	ENSGT00390000013113	ENSGT00940000157065	ENSGT00390000003874.a.b	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000159094.e	ENSGT00940000153470.a.a.a.a	ENSGT00390000001170.a.b	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00940000175880	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00940000178309	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000154394.b.a.b	ENSGT00940000164110	ENSGT00950000183019.f.b.b.d	ENSGT00390000000862
Northern pike	DUPLICATION
Northern pike	MODERN SPECIES	15	MBNL2 (ENSELUG00000003280)	ENSELUG00000003299	HS6ST3 (ENSELUG00000003304)	UGGT2 (ENSELUG00000003443)	dnajc3a (ENSELUG00000003522)	CLDN10 (ENSELUG00000003547)	ENSELUG00000003558	cldn10b (ENSELUG00000003571)	ABCC4 (ENSELUG00000003606)	sox21b (ENSELUG00000003620)	dct (ENSELUG00000003628)	gpc6b (ENSELUG00000003679)	TMPRSS3 (ENSELUG00000003710) #7	ENSELUG00000028423	pdxka (ENSELUG00000003730)	agpat3 (ENSELUG00000003749) #22	ENSELUG00000003796	ndufa10 (ENSELUG00000003853)	CNTNAP5 (ENSELUG00000003908)	ENSELUG00000004224	ENSELUG00000004356	sh3bp4 (ENSELUG00000004382)	ARL4C (ENSELUG00000004400)	ADPRH (ENSELUG00000004422)	arhgap15 (ENSELUG00000004474)	gtdc1 (ENSELUG00000004515)	ENSELUG00000027327	zeb2a (ENSELUG00000004545)	acvr2aa (ENSELUG00000004570)	MBD5 (ENSELUG00000004605)	epc2 (ENSELUG00000004633)
Northern pike	MODERN SPECIES	21	ENSELUG00000025932	ENSELUG00000025714	lrrc58a (ENSELUG00000020505)	fstl1a (ENSELUG00000020537)	gja8b (ENSELUG00000020543)	gja5b (ENSELUG00000020556)	bcl9 (ENSELUG00000020591)	cbr1 (ENSELUG00000020616)	setd4 (ENSELUG00000020643)	cryzl1 (ENSELUG00000020661)	ITSN1 (ENSELUG00000020734)	ENSELUG00000020797	ENSELUG00000000914 #14	TMPRSS3 (ENSELUG00000020975) #7	pdxkb (ENSELUG00000021033)	agpat3 (ENSELUG00000021072) #22	PTH2R (ENSELUG00000021121)	mgat5 (ENSELUG00000021168)	TMEM163 (ENSELUG00000021194)	nxpe3 (ENSELUG00000021253)	nxpe3 (ENSELUG00000021312)	cpb2 (ENSELUG00000021373)	alg11 (ENSELUG00000021401)	spp2 (ENSELUG00000029627)	raph1b (ENSELUG00000021497)	ENSELUG00000021563	ENSELUG00000021582	mdh1b (ENSELUG00000021611)	ENSELUG00000021633	retreg2 (ENSELUG00000021648)	ENSELUG00000021709
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	7	ENSGT00950000182897.B.a.b.b.a.a	ENSGT01030000234621.F.d	ENSGT00950000183071.a.a.a.e.a.b	ENSGT00390000004600.b.b	ENSGT00940000165805	ENSGT00940000155232.t.a.b.a.l	ENSGT00940000166809	ENSGT00940000155232.t.b.b.d.b	ENSGT00940000153931.b.a	ENSGT00940000162795.e	ENSGT00940000156856.d	ENSGT01050000244897.a.b.b.a.a.f	ENSGT00940000158589.b.a #7	ENSGT00940000158449.f	ENSGT00390000003874.a.a.b	ENSGT00950000182836.b.b.b.a.k.a #22	ENSGT01090000259985.b.a.a.a	ENSGT00940000162556.A.b	ENSGT00940000154486.b.b.a.b.b	ENSGT00940000154486.b.a.a.b.e.a.a.a.d	ENSGT00390000016151.g	ENSGT00940000160532.h.c.a	ENSGT00940000160532.h.c.b	ENSGT00390000013151.a.a.b.c	ENSGT00940000160639.b.a.b.b.b.a	ENSGT00950000182860.a.b.b.c	ENSGT00390000006631	ENSGT00950000183208.A.c.b.e	ENSGT00940000157233.d.g	ENSGT00530000064137.a.b.u.a	ENSGT00940000158526.s
Salmoninae_a	ANCESTRAL SPECIES		ENSGT00950000182897.B.a.b.b.a.a	ENSGT01030000234621.F.d	ENSGT00950000183071.a.a.a.e.a.b	ENSGT00390000004600.b.b	ENSGT00940000165805	ENSGT00940000155232.t.a.b.a.l	ENSGT00940000166809	ENSGT00940000155232.t.b.b.d.b	ENSGT00940000153931.b.a	ENSGT00940000162795.e	ENSGT00940000156856.d	ENSGT01050000244897.a.b.b.a.a.f	ENSGT00940000158589.b.a #7	ENSGT00940000158449.f	ENSGT00390000003874.a.a.b	ENSGT00950000182836.b.b.b.a.k.a #22	ENSGT01090000259985.b.a.a.a	ENSGT00940000162556.A.b	ENSGT00940000154486.b.b.a.b.b	ENSGT00940000154486.b.a.a.b.e.a.a.a.d	ENSGT00390000016151.g	ENSGT00940000160532.h.c.a	ENSGT00940000160532.h.c.b	ENSGT00390000013151.a.a.b.c	ENSGT00940000160639.b.a.b.b.b.a	ENSGT00950000182860.a.b.b.c	ENSGT00390000006631	ENSGT00950000183208.A.c.b.e	ENSGT00940000157233.d.g	ENSGT00530000064137.a.b.u.a	ENSGT00940000158526.s
Salmo	ANCESTRAL SPECIES	15	ENSGT00950000182897.B.a.b.b.a.a	ENSGT01030000234621.F.d	ENSGT00950000183071.a.a.a.e.a.b	ENSGT00390000004600.b.b	ENSGT00940000165805	ENSGT00940000155232.t.a.b.a.l	ENSGT00940000166809	ENSGT00940000155232.t.b.b.d.b	ENSGT00940000153931.b.a	ENSGT00940000162795.e	ENSGT00940000156856.d	ENSGT01050000244897.a.b.b.a.a.f	ENSGT00940000158589.b.a #7	ENSGT00940000158449.f	ENSGT00390000003874.a.a.b	ENSGT00950000182836.b.b.b.a.k.a #22	ENSGT01090000259985.b.a.a.a.i	ENSGT00940000162556.A.b	ENSGT00940000154486.b.b.a.b.b	ENSGT00940000154486.b.a.a.b.e.a.a.a.d	ENSGT00390000016151.g	ENSGT00940000160532.h.c.a	ENSGT00940000160532.h.c.b	ENSGT00390000013151.a.a.b.c	ENSGT00940000160639.b.a.b.b.b.a	ENSGT00950000182860.a.b.b.c	ENSGT00390000006631	ENSGT00950000183208.A.c.b.e	ENSGT00940000157233.d.g	ENSGT00530000064137.a.b.u.a	ENSGT00940000158526.s
River trout	MODERN SPECIES	16	OXGR1 (ENSSTUG00000050110)	HS6ST3 (ENSSTUG00000050111)	UGGT2 (ENSSTUG00000050158)	dnajc3a (ENSSTUG00000050699)	CLDN10 (ENSSTUG00000050746)	ENSSTUG00000050748	cldn10b (ENSSTUG00000050750)	ABCC4 (ENSSTUG00000050790)	sox21b (ENSSTUG00000050812)	dct (ENSSTUG00000050816)	gpc6b (ENSSTUG00000050825)	ENSSTUG00000050829	TMPRSS3 (ENSSTUG00000050830) #7	ENSSTUG00000050834	pdxka (ENSSTUG00000050837)	agpat3 (ENSSTUG00000050854) #22	ENSSTUG00000050856	ENSSTUG00000050857	ENSSTUG00000050858	ENSSTUG00000050861	ENSSTUG00000050863	ENSSTUG00000050869	ENSSTUG00000050919	ndufa10 (ENSSTUG00000050924)	ENSSTUG00000050934	ENSSTUG00000003287	sh3bp4 (ENSSTUG00000006143)	ARL4C (ENSSTUG00000006163)	ADPRH (ENSSTUG00000006167)	arhgap15 (ENSSTUG00000006192)	gtdc1 (ENSSTUG00000006293)
Atlantic salmon	MODERN SPECIES	17	MBNL2 (ENSSSAG00000081035)	OXGR1 (ENSSSAG00000081068)	HS6ST3 (ENSSSAG00000122059)	UGGT2 (ENSSSAG00000081076)	dnajc3a (ENSSSAG00000081124)	CLDN10 (ENSSSAG00000081129)	ENSSSAG00000097966	cldn10b (ENSSSAG00000081133)	ABCC4 (ENSSSAG00000081257)	sox21b (ENSSSAG00000090605)	ENSSSAG00000081457	gpc6b (ENSSSAG00000068375)	ENSSSAG00000081471 #7	ENSSSAG00000081472	pdxka (ENSSSAG00000086835)	ENSSSAG00000081475 #22	ENSSSAG00000095490	ENSSSAG00000081478	ENSSSAG00000081480	ENSSSAG00000081479	ENSSSAG00000081481	ENSSSAG00000081482	ENSSSAG00000081485	ndufa10 (ENSSSAG00000081486)	ENSSSAG00000081497	ENSSSAG00000081555	ENSSSAG00000069294	sh3bp4 (ENSSSAG00000081600)	ENSSSAG00000109819	ENSSSAG00000102975	adprh (ENSSSAG00000081606)
Oncorhynchus	ANCESTRAL SPECIES	3	ENSGT00950000182897.B.a.b.b.a.a	ENSGT01030000234621.F.d	ENSGT00950000183071.a.a.a.e.a.b	ENSGT00390000004600.b.b	ENSGT00940000165805	ENSGT00940000155232.t.a.b.a.l	ENSGT00940000166809	ENSGT00940000155232.t.b.b.d.b	ENSGT00940000153931.b.a	ENSGT00940000162795.e	ENSGT00940000156856.d	ENSGT01050000244897.a.b.b.a.a.f	ENSGT00940000158589.b.a #7	ENSGT00940000158449.f	ENSGT00390000003874.a.a.b	ENSGT00950000182836.b.b.b.a.k.a #22	ENSGT01090000259985.b.a.a.a	ENSGT00940000162556.A.b	ENSGT00940000154486.b.b.a.b.b	ENSGT00940000154486.b.a.a.b.e.a.a.a.d	ENSGT00390000016151.g	ENSGT00940000160532.h.c.a	ENSGT00940000160532.h.c.b	ENSGT00390000013151.a.a.b.c	ENSGT00940000160639.b.a.b.b.b.a	ENSGT00950000182860.a.b.b.c	ENSGT00390000006631	ENSGT00950000183208.A.c.b.e	ENSGT00940000157233.d.g	ENSGT00530000064137.a.b.u.a	ENSGT00940000158526.s
Oncorhynchus_a	ANCESTRAL SPECIES	8	ENSGT00950000182897.B.a.b.b.a.a	ENSGT01030000234621.F.d	ENSGT00950000183071.a.a.a.e.a.b	ENSGT00390000004600.b.b	ENSGT00940000165805	ENSGT00940000155232.t.a.b.a.l	ENSGT00940000166809	ENSGT00940000155232.t.b.b.d.b	ENSGT00940000153931.b.a	ENSGT00940000162795.e	ENSGT00940000156856.d	ENSGT01050000244897.a.b.b.a.a.f	ENSGT00940000158589.b.a #7	ENSGT00940000158449.f	ENSGT00390000003874.a.a.b	ENSGT00950000182836.b.b.b.a.k.a #22	ENSGT01090000259985.b.a.a.a.h	ENSGT01090000259985.b.a.a.a.g	ENSGT00940000162556.A.b	ENSGT00940000154486.b.b.a.b.b	ENSGT00940000154486.b.a.a.b.e.a.a.a.d	ENSGT00390000016151.g	ENSGT00940000160532.h.c.a	ENSGT00940000160532.h.c.b	ENSGT00390000013151.a.a.b.c	ENSGT00940000160639.b.a.b.b.b.a	ENSGT00950000182860.a.b.b.c	ENSGT00390000006631	ENSGT00950000183208.A.c.b.e	ENSGT00940000157233.d.g	ENSGT00530000064137.a.b.u.a
Coho salmon	MODERN SPECIES	11	RAP2A (ENSOKIG00005031425)	MBNL2 (ENSOKIG00005031458)	OXGR1 (ENSOKIG00005031560)	HS6ST3 (ENSOKIG00005031565)	UGGT2 (ENSOKIG00005031772)	dnajc3a (ENSOKIG00005036383)	ENSOKIG00005036780	cldn10b (ENSOKIG00005036788)	ABCC4 (ENSOKIG00005036926)	sox21b (ENSOKIG00005039048)	DCT (ENSOKIG00005039083)	gpc6b (ENSOKIG00005039314)	TMPRSS3 (ENSOKIG00005039458) #7	ENSOKIG00005039511	pdxka (ENSOKIG00005039540)	agpat3 (ENSOKIG00005040043) #22	ENSOKIG00005040088	ENSOKIG00005040287	ENSOKIG00005040348	ENSOKIG00005040376	ENSOKIG00005040875	ndufa10 (ENSOKIG00005041173)	ENSOKIG00005041362	ENSOKIG00005043752	sh3bp4 (ENSOKIG00005046356)	ENSOKIG00005046369	ARL4C (ENSOKIG00005046372)	ADPRH (ENSOKIG00005046379)	arhgap15 (ENSOKIG00005046394)	gtdc1 (ENSOKIG00005046420)	zeb2a (ENSOKIG00005046434)
Chinook salmon	MODERN SPECIES	22	RAP2A (ENSOTSG00005019336)	MBNL2 (ENSOTSG00005019337)	OXGR1 (ENSOTSG00005019338)	HS6ST3 (ENSOTSG00005019339)	UGGT2 (ENSOTSG00005019373)	dnajc3a (ENSOTSG00005026434)	CLDN10 (ENSOTSG00005026435)	ENSOTSG00005026436	cldn10b (ENSOTSG00005026438)	ABCC4 (ENSOTSG00005026446)	sox21b (ENSOTSG00005026763)	dct (ENSOTSG00005026771)	gpc6b (ENSOTSG00005026775)	TMPRSS3 (ENSOTSG00005026778) #7	pdxka (ENSOTSG00005026779)	agpat3 (ENSOTSG00005026782) #22	ENSOTSG00005026783	ENSOTSG00005026784	ENSOTSG00005026785	ENSOTSG00005026786	ENSOTSG00005026787	ENSOTSG00005026789	ndufa10 (ENSOTSG00005026790)	ENSOTSG00005001354	ENSOTSG00005009276	sh3bp4 (ENSOTSG00005010245)	ARL4C (ENSOTSG00005010246)	ADPRH (ENSOTSG00005010248)	arhgap15 (ENSOTSG00005010259)	gtdc1 (ENSOTSG00005010262)	zeb2a (ENSOTSG00005010263)
Rainbow trout	MODERN SPECIES	21	ENSOMYG00000069937	OXGR1 (ENSOMYG00000050579)	HS6ST3 (ENSOMYG00000041768)	UGGT2 (ENSOMYG00000041825)	dnajc3a (ENSOMYG00000042251)	CLDN10 (ENSOMYG00000042315)	ENSOMYG00000042320	cldn10b (ENSOMYG00000042324)	ABCC4 (ENSOMYG00000042353)	sox21b (ENSOMYG00000042388)	ENSOMYG00000042409	gpc6b (ENSOMYG00000042511)	ENSOMYG00000042544 #7	ENSOMYG00000054604	pdxka (ENSOMYG00000042566)	ENSOMYG00000042728 #22	ENSOMYG00000053300	il1rl1 (ENSOMYG00000042755)	ENSOMYG00000042829	ENSOMYG00000068390	ENSOMYG00000042842	ENSOMYG00000060709	ENSOMYG00000000270	ndufa10 (ENSOMYG00000000339)	ENSOMYG00000000840	ENSOMYG00000002718	sh3bp4 (ENSOMYG00000004214)	ENSOMYG00000004236	ENSOMYG00000073609	ENSOMYG00000062109	ENSOMYG00000004346
Huchen	MODERN SPECIES	7	OXGR1 (ENSHHUG00000036614)	HS6ST3 (ENSHHUG00000036615)	UGGT2 (ENSHHUG00000036620)	dnajc3a (ENSHHUG00000036759)	ENSHHUG00000036780	ENSHHUG00000036783	CLDN10 (ENSHHUG00000036788)	ABCC4 (ENSHHUG00000036809)	sox21b (ENSHHUG00000037012)	dct (ENSHHUG00000037016)	gpc6b (ENSHHUG00000037034)	ENSHHUG00000037074 #7	ENSHHUG00000015925 #7	ENSHHUG00000015926	pdxka (ENSHHUG00000015929)	agpat3 (ENSHHUG00000016045) #22	ENSHHUG00000016068
Salmoninae	ANCESTRAL SPECIES	740													ENSGT00940000156856.c.b	ENSGT01050000244897.a.b.b.a.a.e	ENSGT00390000003874.a.a.a	ENSGT00950000182836.b.b.b.a.k.b #22	ENSGT01100000263531.G.n	ENSGT00940000154486.b.b.a.b.a	ENSGT00940000154486.b.a.a.b.e.a.a.a.c	ENSGT00390000016151.h	ENSGT00510000049102.c	ENSGT00940000160532.h.d.a	ENSGT00950000182977.B.b.b.d
Salmoninae_a	ANCESTRAL SPECIES		ENSGT00940000157974.c	ENSGT00940000153476.b.o.a.b	ENSGT00940000155972.B.cb	ENSGT00940000155318.b.a.b.d	ENSGT01050000244823.d.a.b.a.a.b.a.b.a.b.b.a.b	ENSGT00940000160594.h	ENSGT00950000182897.B.a.b.b.a.b	ENSGT00990000211313	ENSGT00950000183071.a.a.a.e.a.a	ENSGT00940000155232.t.a.b.a.k	ENSGT00940000155232.t.b.b.d.a	ENSGT00940000162795.f	ENSGT00940000156856.c.b	ENSGT01050000244897.a.b.b.a.a.e	ENSGT00390000003874.a.a.a	ENSGT00950000182836.b.b.b.a.k.b #22	ENSGT01100000263531.G.n	ENSGT00940000154486.b.b.a.b.a	ENSGT00940000154486.b.a.a.b.e.a.a.a.c	ENSGT00390000016151.h	ENSGT00510000049102.c	ENSGT00940000160532.h.d.a	ENSGT00950000182977.B.b.b.d	ENSGT00940000160532.h.d.b	ENSGT00530000065251.m.a	ENSGT00390000013151.a.a.b.d	ENSGT00940000160639.b.a.b.b.b.b	ENSGT00940000166921.a	ENSGT00950000182860.a.b.b.d	ENSGT00950000183208.A.c.b.f	ENSGT00940000157233.d.h
Oncorhynchus	ANCESTRAL SPECIES	13	ENSGT00940000153476.b.o.a.b	ENSGT00940000155972.B.cb	ENSGT00940000155318.b.a.b.d	ENSGT01050000244823.d.a.b.a.a.b.a.b.a.b.b.a.b	ENSGT01050000244823.d.a.b.a.a.b.a.b.a.a.b.b.a	ENSGT00940000160594.g.a.b	ENSGT00950000182897.B.a.b.b.a.b	ENSGT00990000211313	ENSGT00950000183071.a.a.a.e.a.a	ENSGT00940000155232.t.a.b.a.k	ENSGT00940000155232.t.b.b.d.a	ENSGT00940000162795.f	ENSGT00940000156856.c.b	ENSGT01050000244897.a.b.b.a.a.e	ENSGT00390000003874.a.a.a	ENSGT00950000182836.b.b.b.a.k.b #22	ENSGT01100000263531.G.n	ENSGT00940000154486.b.b.a.b.a	ENSGT00940000154486.b.a.a.b.e.a.a.a.c	ENSGT00940000153510.a.a.b	ENSGT00390000016151.h	ENSGT00510000049102.c	ENSGT00940000160532.h.d.a	ENSGT00950000182977.B.b.b.d	ENSGT00940000160532.h.d.b	ENSGT00530000065251.m.a	ENSGT00390000013151.a.a.b.d	ENSGT00940000160639.b.a.b.b.b.b.d	ENSGT00940000160639.b.a.b.b.b.b.c	ENSGT00940000166921.a	ENSGT00950000182860.a.b.b.d
Rainbow trout	MODERN SPECIES	14	ENSOMYG00000050388	ENSOMYG00000062273	ENSOMYG00000061875	ENSOMYG00000069828	ENSOMYG00000023969	RAP2A (ENSOMYG00000019238)	MBNL2 (ENSOMYG00000019148)	ENSOMYG00000019064	HS6ST3 (ENSOMYG00000019059)	ENSOMYG00000019043	ENSOMYG00000019029	sox21b (ENSOMYG00000019015)	ENSOMYG00000018120	gpc6b (ENSOMYG00000018074)	ENSOMYG00000017742	ENSOMYG00000017677 #22	ENSOMYG00000017645	ENSOMYG00000017622	ENSOMYG00000017579	ENSOMYG00000049274	ENSOMYG00000017512	ENSOMYG00000069429	ENSOMYG00000027150	ENSOMYG00000051381	ENSOMYG00000069785	ENSOMYG00000026237	ENSOMYG00000026010	ENSOMYG00000026003	ENSOMYG00000025984	ENSOMYG00000025966	ENSOMYG00000068371
Oncorhynchus_a	ANCESTRAL SPECIES	11	ENSGT00940000153476.b.o.a.b	ENSGT00940000155972.B.cb	ENSGT00940000155318.b.a.b.d	ENSGT01050000244823.d.a.b.a.a.b.a.b.a.b.b.a.b	ENSGT01050000244823.d.a.b.a.a.b.a.b.a.a.b.b.a	ENSGT00940000160594.g.a.b	ENSGT00950000182897.B.a.b.b.a.b	ENSGT00990000211313	ENSGT00950000183071.a.a.a.e.a.a	ENSGT00940000155232.t.a.b.a.k	ENSGT00940000155232.t.b.b.d.a	ENSGT00940000162795.f	ENSGT00940000156856.c.b	ENSGT01050000244897.a.b.b.a.a.e	ENSGT00390000003874.a.a.a	ENSGT00950000182836.b.b.b.a.k.b #22	ENSGT01100000263531.G.n	ENSGT01040000241782.a	ENSGT00940000154486.b.b.a.b.a	ENSGT00940000154486.b.a.a.b.e.a.a.a.c	ENSGT00940000153510.a.a.b	ENSGT00390000016151.h	ENSGT00510000049102.c	ENSGT00940000160532.h.d.a	ENSGT00950000182977.B.b.b.d	ENSGT00940000160532.h.d.b	ENSGT00530000065251.m.a	ENSGT00940000153773.a.b	ENSGT00940000154486.b.b.b.a.b	ENSGT00940000155311.B	ENSGT00530000063599.B.m.a.a
Coho salmon	MODERN SPECIES	18	ENSOKIG00005010112	ENSOKIG00005010108	ENSOKIG00005010095	RAP2A (ENSOKIG00005010089)	MBNL2 (ENSOKIG00005010014)	ENSOKIG00005009981	HS6ST3 (ENSOKIG00005009972)	ENSOKIG00005009947	CLDN10 (ENSOKIG00005009930)	sox21b (ENSOKIG00005009917)	DCT (ENSOKIG00005009906)	dct (ENSOKIG00005009740)	gpc6b (ENSOKIG00005009702)	PDXK (ENSOKIG00005009663)	ENSOKIG00005009653	AGPAT3 (ENSOKIG00005009634) #22	ENSOKIG00005009595	ENSOKIG00005009583	ENSOKIG00005009542	ENSOKIG00005009470	ENSOKIG00005009445	NDUFA10 (ENSOKIG00005009422)	ENSOKIG00005009405	gypc (ENSOKIG00005009358)	CNTNAP5 (ENSOKIG00005009128)	ENSOKIG00005009095	ENSOKIG00005009080	CNTNAP5 (ENSOKIG00005006419)	ENSOKIG00005006239	ENSOKIG00005006226	SH3BP4 (ENSOKIG00005029441)
Chinook salmon	MODERN SPECIES	66	pou5f3 (ENSOTSG00005031753)	fut7 (ENSOTSG00005031752)	clic3 (ENSOTSG00005031739)	ENSOTSG00005031736	pdhb (ENSOTSG00005031734)	kctd6a (ENSOTSG00005031730)	ccdc71 (ENSOTSG00005031727)	stab1 (ENSOTSG00005031725)	ENSOTSG00005031721	cldn10b (ENSOTSG00005031716)	sox21b (ENSOTSG00005031714)	dct (ENSOTSG00005031712)	gpc6b (ENSOTSG00005031710)	gpc6b (ENSOTSG00005031709)	PDXK (ENSOTSG00005031708)	agpat3 (ENSOTSG00005031707) #22	ENSOTSG00005031704	ENSOTSG00005031703	ENSOTSG00005031565	ENSOTSG00005031555	ndufa10 (ENSOTSG00005031366)	gypc (ENSOTSG00005031364)
Salmo	ANCESTRAL SPECIES	10	ENSGT00940000155972.B.cb	ENSGT00940000155318.b.a.b.d	ENSGT01050000244823.d.a.b.a.a.b.a.b.a.b.b.a.b	ENSGT01050000244823.d.a.b.a.a.b.b.b	ENSGT01050000244823.d.a.b.a.a.a.b	ENSGT00940000160594.h	ENSGT00950000182897.B.a.b.b.a.b	ENSGT00990000211313	ENSGT00950000183071.a.a.a.e.a.a	ENSGT00940000155232.t.a.b.a.k	ENSGT00940000155232.t.b.b.d.a	ENSGT00940000162795.f	ENSGT00940000156856.c.b	ENSGT01050000244897.a.b.b.a.a.e	ENSGT00390000003874.a.a.a	ENSGT00950000182836.b.b.b.a.k.b #22	ENSGT01100000263531.G.n	ENSGT00990000212594	ENSGT00940000154486.b.b.a.a	ENSGT00390000016151.h	ENSGT00940000160532.h.d.a	ENSGT00950000182977.B.b.b.d	ENSGT00940000160532.h.d.b	ENSGT00530000065251.m.a	ENSGT00390000013151.a.a.b.d	ENSGT00940000160639.b.a.b.b.b.b	ENSGT00940000166921.a	ENSGT00950000182860.a.b.b.d	ENSGT00950000183208.A.c.b.f	ENSGT00940000157233.d.h	ENSGT00530000064137.a.b.u.b
Atlantic salmon	MODERN SPECIES	13	ENSSSAG00000110345	ENSSSAG00000113440	ENSSSAG00000115040	ENSSSAG00000068508	RAP2A (ENSSSAG00000113659)	MBNL2 (ENSSSAG00000068491)	ENSSSAG00000068489	HS6ST3 (ENSSSAG00000081069)	CLD10 (ENSSSAG00000068476)	CLD10 (ENSSSAG00000068473)	sox21b (ENSSSAG00000119187)	ENSSSAG00000068460	gpc6b (ENSSSAG00000081467)	ENSSSAG00000096540	PDXK (ENSSSAG00000068272)	ENSSSAG00000099256 #22	ENSSSAG00000068245	ENSSSAG00000068236	ENSSSAG00000067965	ahr2a (ENSSSAG00000122051)	NDUAA (ENSSSAG00000067928)	ENSSSAG00000109411	ENSSSAG00000113592	ENSSSAG00000064864	clm8 (ENSSSAG00000064734)	ENSSSAG00000063572	ENSSSAG00000063519	ENSSSAG00000114515	ENSSSAG00000063499	ENSSSAG00000114450	ENSSSAG00000063341
River trout	MODERN SPECIES	12	ENSSTUG00000045431	ENSSTUG00000045436	ENSSTUG00000045448	ENSSTUG00000001982	RAP2A (ENSSTUG00000002344)	MBNL2 (ENSSTUG00000002540)	ENSSTUG00000002640	HS6ST3 (ENSSTUG00000002658)	ENSSTUG00000003159	ENSSTUG00000003334	cldn10b (ENSSTUG00000003552)	sox21b (ENSSTUG00000003562)	dct (ENSSTUG00000003619)	gpc6b (ENSSTUG00000003753)	PDXK (ENSSTUG00000003967)	agpat3 (ENSSTUG00000004078) #22	ENSSTUG00000004131	ENSSTUG00000004201	ENSSTUG00000004780	ndufa10 (ENSSTUG00000004793)	ENSSTUG00000004869	ENSSTUG00000005306	ENSSTUG00000005317	ENSSTUG00000005465	ENSSTUG00000007613	ENSSTUG00000007626	sh3bp4 (ENSSTUG00000007637)	ENSSTUG00000007651	ARL4C (ENSSTUG00000007658)	ENSSTUG00000007661	arhgap15 (ENSSTUG00000007723)
Huchen	MODERN SPECIES	3933																agpat3 (ENSHHUG00000047671) #22	ENSHHUG00000047687	ENSHHUG00000047778
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	640									ENSGT01050000244864.C.f.b	ENSGT00730000110915.b.c.b	ENSGT00390000013113.v	ENSGT00940000157065.z	ENSGT00940000159505.v.b #14	ENSGT00940000158589.b.b.d.b #7	ENSGT00390000003874.a.b.b	ENSGT00950000182836.b.b.b.a.l.a #22	ENSGT00940000159094.e.d	ENSGT00940000153470.a.a.a.a.c.b.a.a	ENSGT00390000001170.a.b.b	ENSGT00940000159160.g	ENSGT00550000075118.k.a	ENSGT00940000175880
Salmoninae_a	ANCESTRAL SPECIES	66	ENSGT00950000183208.A.c.a.o	ENSGT00940000157233.c.b	ENSGT00390000010372.o.a	ENSGT00390000003873.n.b #23	ENSGT00520000055635.c.a.a.b.e.b	ENSGT00940000156556.h.d	ENSGT00940000157784.c.d.f.a	ENSGT01050000244864.D.t.a	ENSGT01050000244864.C.f.b	ENSGT00730000110915.b.c.b	ENSGT00390000013113.v	ENSGT00940000157065.z	ENSGT00940000159505.v.b #14	ENSGT00940000158589.b.b.d.a.b #7	ENSGT00390000003874.a.b.b	ENSGT00950000182836.b.b.b.a.l.a #22	ENSGT00940000159094.e.d	ENSGT00940000153470.a.a.a.a.c.b.a.a	ENSGT00390000001170.a.b.b	ENSGT00940000159160.g	ENSGT00550000075118.k.a	ENSGT00940000175880	ENSGT00940000156552.c.b.j	ENSGT00940000178309.a.a.a	ENSGT00530000063410.b.i.b	ENSGT00940000154394.b.a.b.p.b	ENSGT00940000164110.f	ENSGT00950000183019.f.b.b.d.c.a	ENSGT00390000000862.h	ENSGT00940000156160.b.a.e.b.a	ENSGT00940000155270.i.b.d
Salmo	ANCESTRAL SPECIES	48	ENSGT00940000157233.c.b	ENSGT00390000010372.o.a.a	ENSGT00390000003873.n.b #23	ENSGT00390000010372.o.a.b	ENSGT00520000055635.c.a.a.a	ENSGT00940000156556.h.d	ENSGT00940000157784.c.d.f.a	ENSGT00940000157784.c.d.e	ENSGT01050000244864.D.t.a	ENSGT01050000244864.C.f.b	ENSGT00730000110915.b.c.b	ENSGT00390000013113.v	ENSGT00940000157065.y.a.b	ENSGT00940000159505.v.b #14	ENSGT00390000003874.a.b.b	ENSGT00950000182836.b.b.b.a.l.a #22	ENSGT00940000159094.e.d	ENSGT00940000153470.a.a.a.a.c.b.b	ENSGT00390000001170.a.b.b	ENSGT00940000159160.g	ENSGT00550000075118.k.a	ENSGT00940000175880	ENSGT00940000156552.c.b.j	ENSGT00940000178309.a.a.a	ENSGT00530000063410.b.i.b	ENSGT00940000154394.b.a.b.p.b	ENSGT00940000164110.f	ENSGT00950000183019.f.b.b.d.c.a	ENSGT00390000000862.h	ENSGT00940000156160.b.a.e.b.a	ENSGT00940000155270.i.b.d
River trout	MODERN SPECIES	36	ENSSTUG00000019153	TRAPPC10 (ENSSTUG00000018176) #23	ENSSTUG00000018115	gsk3ba (ENSSTUG00000018010)	lrrc58a (ENSSTUG00000017989)	fstl1a (ENSSTUG00000017559)	gja8b (ENSSTUG00000017529)	ENSSTUG00000017526	gja5b (ENSSTUG00000017522)	bcl9 (ENSSTUG00000017500)	cryzl1 (ENSSTUG00000017394)	ITSN1 (ENSSTUG00000015611)	ENSSTUG00000015341 #14	ENSSTUG00000015335	pdxkb (ENSSTUG00000015202)	agpat3 (ENSSTUG00000015126) #22	PTH2R (ENSSTUG00000014994)	mgat5 (ENSSTUG00000014911)	TMEM163 (ENSSTUG00000014881)	ENSSTUG00000014878	cpb2 (ENSSTUG00000014857)	alg11 (ENSSTUG00000014844)	raph1b (ENSSTUG00000013989)	ENSSTUG00000013913	mdh1b (ENSSTUG00000013892)	ENSSTUG00000013869	retreg2 (ENSSTUG00000013855)	ENSSTUG00000013834	cnppd1 (ENSSTUG00000013824)	abcb6a (ENSSTUG00000013395)	nrp2a (ENSSTUG00000013297)
Atlantic salmon	MODERN SPECIES	7	ENSSSAG00000119084	ENSSSAG00000111645	ENSSSAG00000007805 #23	ENSSSAG00000089311	GSK3B (ENSSSAG00000095698)	lrrc58a (ENSSSAG00000042935)	fstl1a (ENSSSAG00000042764)	gja8b (ENSSSAG00000101148)	gja5b (ENSSSAG00000042741)	bcl9 (ENSSSAG00000042658)	cryzl1 (ENSSSAG00000042514)	ENSSSAG00000009516	ENSSSAG00000009270	pknx1 (ENSSSAG00000009247) #14	ENSSSAG00000007894	PLCC (ENSSSAG00000007841) #22	ENSSSAG00000007806	ENSSSAG00000007767	ENSSSAG00000086044	cpb2 (ENSSSAG00000104799)	alg11 (ENSSSAG00000007741)	ENSSSAG00000007736	ENSSSAG00000087440	ENSSSAG00000007675	ENSSSAG00000007664	mdh1b (ENSSSAG00000007657)	ENSSSAG00000086381	retreg2 (ENSSSAG00000007641)	ENSSSAG00000007632	abcb6a (ENSSSAG00000082548)	ENSSSAG00000101271
Oncorhynchus	ANCESTRAL SPECIES	43	ENSGT00950000183208.A.c.a.o	ENSGT00940000157233.c.b	ENSGT00390000010372.o.a	ENSGT00390000003873.n.b #23	ENSGT00520000055635.c.a.a.b.e.b	ENSGT00940000156556.h.d	ENSGT00940000157784.c.d.f.a	ENSGT01050000244864.D.t.a	ENSGT01050000244864.C.f.b	ENSGT00730000110915.b.c.b	ENSGT00390000013113.v	ENSGT00940000157065.z	ENSGT00940000159505.v.b #14	ENSGT00940000158589.b.b.d.a.b #7	ENSGT00390000003874.a.b.b	ENSGT00950000182836.b.b.b.a.l.a #22	ENSGT00940000159094.e.d	ENSGT00940000153470.a.a.a.a.c.b.a.a	ENSGT00390000001170.a.b.b	ENSGT00940000159160.g	ENSGT00550000075118.k.a	ENSGT00940000175880	ENSGT00940000156552.c.b.j	ENSGT00940000178309.a.a.a	ENSGT00940000160639.b.a.b.b.a.b	ENSGT00390000013151.a.a.a.d	ENSGT00940000161997.a.j	ENSGT00940000160532.g.h	ENSGT00940000154486.b.a.a.b.e.a.b.e	ENSGT00940000154486.b.b.b.a.b	ENSGT00940000155311.B
Oncorhynchus_a	ANCESTRAL SPECIES	6	ENSGT00950000183208.A.c.a.o	ENSGT00940000157233.c.b	ENSGT00390000010372.o.a	ENSGT00390000003873.n.b #23	ENSGT00520000055635.c.a.a.b.e.b	ENSGT00940000156556.h.d	ENSGT00940000157784.c.d.f.b	ENSGT01050000244864.D.t.a	ENSGT01050000244864.C.f.b	ENSGT00730000110915.b.c.b	ENSGT00390000013113.v	ENSGT00940000157065.z	ENSGT00940000159505.v.b #14	ENSGT00940000158589.b.b.d.a.b #7	ENSGT00390000003874.a.b.b	ENSGT00950000182836.b.b.b.a.l.a #22	ENSGT00940000159094.e.d	ENSGT00940000153470.a.a.a.a.c.b.a.a	ENSGT00390000001170.a.b.b	ENSGT00940000159160.g	ENSGT00550000075118.k.a	ENSGT00940000156552.c.b.j	ENSGT00940000178309.a.a.a	ENSGT00530000063410.b.i.b	ENSGT00940000154394.b.a.a.a.b.a.b.a	ENSGT00940000164110.f	ENSGT00950000183019.f.b.b.d.c.a	ENSGT00940000167257.h.b	ENSGT00940000156160.b.a.e.b.a	ENSGT00940000155270.i.b.d	ENSGT00950000183214.a.b.a.b.f.b.b.k
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	5	ENSOTSG00005043687	ENSOTSG00005043690	zgc:194242 (ENSOTSG00005044029)	TRAPPC10 (ENSOTSG00005044030) #23	gsk3ba (ENSOTSG00005044041)	lrrc58a (ENSOTSG00005044465)	fstl1a (ENSOTSG00005044471)	gja8b (ENSOTSG00005044496)	gja5b (ENSOTSG00005044497)	bcl9 (ENSOTSG00005044498)	cryzl1 (ENSOTSG00005044501)	ENSOTSG00005044504	ENSOTSG00005044707 #14	ENSOTSG00005044709	pdxkb (ENSOTSG00005044714)	agpat3 (ENSOTSG00005044788) #22	PTH2R (ENSOTSG00005044795)	mgat5 (ENSOTSG00005044799)	TMEM163 (ENSOTSG00005044801)	cpb2 (ENSOTSG00005044803)	alg11 (ENSOTSG00005044804)	raph1b (ENSOTSG00005044808)	ENSOTSG00005044810	mdh1b (ENSOTSG00005044811)	ENSOTSG00005044812	retreg2 (ENSOTSG00005044814)	ENSOTSG00005044813	cnppd1 (ENSOTSG00005044815)	abcb6a (ENSOTSG00005044825)	ENSOTSG00005045324	ENSOTSG00005045325
Chinook salmon	MODERN SPECIES	31	ENSOTSG00005024671	ENSOTSG00005023534	zgc:194242 (ENSOTSG00005023527)	TRAPPC10 (ENSOTSG00005023480) #23	gsk3ba (ENSOTSG00005022442)	lrrc58a (ENSOTSG00005022430)	fstl1a (ENSOTSG00005022427)	gja8b (ENSOTSG00005022423)	gja5b (ENSOTSG00005022422)	bcl9 (ENSOTSG00005022419)	cryzl1 (ENSOTSG00005022413)	ITSN1 (ENSOTSG00005022307)	ENSOTSG00005022306 #14	ENSOTSG00005022305 #7	pdxkb (ENSOTSG00005022300)	agpat3 (ENSOTSG00005022299) #22	PTH2R (ENSOTSG00005022295)	mgat5 (ENSOTSG00005022269)	TMEM163 (ENSOTSG00005022264)	cpb2 (ENSOTSG00005022263)	alg11 (ENSOTSG00005022262)	raph1b (ENSOTSG00005022258)	ENSOTSG00005022257	ENSOTSG00005022256	retreg2 (ENSOTSG00005022254)	ENSOTSG00005022252	cnppd1 (ENSOTSG00005022249)	abcb6a (ENSOTSG00005021957)	abcb6a (ENSOTSG00005022200)	ENSOTSG00005021956	ENSOTSG00005021955
Coho salmon	MODERN SPECIES	7	ZEB2 (ENSOKIG00005034051)	ENSOKIG00005033422	ENSOKIG00005033373	TRAPPC10 (ENSOKIG00005032949) #23	GSK3B (ENSOKIG00005032382)	lrrc58a (ENSOKIG00005032318)	fstl1a (ENSOKIG00005032248)	gja8b (ENSOKIG00005032234)	gja5b (ENSOKIG00005032228)	bcl9 (ENSOKIG00005032136)	cryzl1 (ENSOKIG00005032013)	ITSN1 (ENSOKIG00005031417)	ENSOKIG00005031299	PKNOX1 (ENSOKIG00005031285) #14	pdxkb (ENSOKIG00005031043)	agpat3 (ENSOKIG00005030992) #22	PTH2R (ENSOKIG00005030757)	mgat5 (ENSOKIG00005030698)	TMEM163 (ENSOKIG00005030622)	alg11 (ENSOKIG00005030601)	raph1b (ENSOKIG00005029357)	ENSOKIG00005029256	mdh1b (ENSOKIG00005029217)	ENSOKIG00005029207	retreg2 (ENSOKIG00005029180)	cpb2 (ENSOKIG00005029166)	ENSOKIG00005029127	cnppd1 (ENSOKIG00005029096)	abcb6a (ENSOKIG00005028626)	nrp2a (ENSOKIG00005028183)	ENSOKIG00005011393
Rainbow trout	MODERN SPECIES	9	ENSOMYG00000022771	ENSOMYG00000049283	ENSOMYG00000022909	ENSOMYG00000023464 #23	ENSOMYG00000024550	GSK3B (ENSOMYG00000024692)	lrrc58a (ENSOMYG00000024988)	fstl1a (ENSOMYG00000068136)	gja8b (ENSOMYG00000025145)	gja5b (ENSOMYG00000025151)	bcl9 (ENSOMYG00000025199)	cryzl1 (ENSOMYG00000025324)	ENSOMYG00000025910	ENSOMYG00000026780 #14	ENSOMYG00000026885	agpat3 (ENSOMYG00000026986) #22	ENSOMYG00000027279	ENSOMYG00000034060	ENSOMYG00000034120	ENSOMYG00000039305	cpb2 (ENSOMYG00000034176)	alg11 (ENSOMYG00000034204)	ENSOMYG00000063522	raph1b (ENSOMYG00000034223)	ENSOMYG00000034252	mdh1b (ENSOMYG00000049353)	ENSOMYG00000034261	retreg2 (ENSOMYG00000034273)	ENSOMYG00000038150	ENSOMYG00000034291	cnppd1 (ENSOMYG00000034310)
Huchen	MODERN SPECIES	216		ACVR2A (ENSHHUG00000023422)	TRAPPC10 (ENSHHUG00000023974) #23	gsk3ba (ENSHHUG00000024002)	lrrc58a (ENSHHUG00000024495)	fstl1a (ENSHHUG00000024498)	gja8b (ENSHHUG00000024548)	gja5b (ENSHHUG00000024555)	bcl9 (ENSHHUG00000024559)	cbr1 (ENSHHUG00000024580)	cryzl1 (ENSHHUG00000024589)	ENSHHUG00000024613	ENSHHUG00000024768 #14	ENSHHUG00000024796 #7	pdxkb (ENSHHUG00000024802)	agpat3 (ENSHHUG00000024810) #22	ENSHHUG00000024830	MGAT5 (ENSHHUG00000024903)	TMEM163 (ENSHHUG00000024983)	ENSHHUG00000024987	cpb2 (ENSHHUG00000024990)	alg11 (ENSHHUG00000025017)	ENSHHUG00000025027	raph1b (ENSHHUG00000025043)	ENSHHUG00000025099	ENSHHUG00000025111	ENSHHUG00000025162	ENSHHUG00000025170	retreg2 (ENSHHUG00000025182)	ENSHHUG00000025202	cnppd1 (ENSHHUG00000025212)
Salmoninae	ANCESTRAL SPECIES	110	ENSGT00520000055635.c.a.a.b.e.b	ENSGT00940000156556.h.d	ENSGT00940000157784.c.d	ENSGT01050000244864.D.t	ENSGT01050000244864.C.f.a	ENSGT00730000110915.b.c.a	ENSGT00510000046499.r.a	ENSGT00940000153577.A	ENSGT00390000013113.u	ENSGT00940000157065.y.a.a	ENSGT00990000205068.b	ENSGT00940000157065.y.b	ENSGT00940000159505.v.a #14	ENSGT00940000158589.b.b.d.a.a #7	ENSGT00390000003874.a.b.a	ENSGT00950000182836.b.b.b.a.l.b #22	ENSGT00940000159094.e.c	ENSGT00940000153470.a.a.a.a.d	ENSGT00940000153470.a.a.a.a.c.a	ENSGT00390000001170.a.b.a	ENSGT00940000159160.h	ENSGT00550000075118.k.b	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00940000178309.a.a.a	ENSGT00940000178309.a.b	ENSGT01030000234607.A.b	ENSGT00530000063410.b.i	ENSGT00940000154394.b.a.b.p.b	ENSGT00940000154394.b.a.b.p.a.b	ENSGT00940000164110.e
Salmoninae_a	ANCESTRAL SPECIES	66	ENSGT00520000055635.c.a.a.b.e.a	ENSGT00940000156556.h.c	ENSGT00940000157784.c.d.f.b	ENSGT01050000244864.D.t.b	ENSGT01050000244864.C.f.a	ENSGT00730000110915.b.c.a	ENSGT00510000046499.r.a	ENSGT00940000153577.A	ENSGT00390000013113.u	ENSGT00940000157065.y.b	ENSGT00940000157065.y.a.a	ENSGT00990000205068.b	ENSGT00940000159505.v.a #14	ENSGT00940000158589.b.b.d.a.a #7	ENSGT00390000003874.a.b.a	ENSGT00950000182836.b.b.b.a.l.b #22	ENSGT00940000159094.e.c	ENSGT00940000153470.a.a.a.a.c.a	ENSGT00390000001170.a.b.a	ENSGT00940000159160.h	ENSGT00550000075118.k.b	ENSGT00390000009001	ENSGT00940000156552.c.b.i	ENSGT00940000178309.a.b	ENSGT01030000234607.A.b	ENSGT00530000063410.b.j	ENSGT00940000154394.b.a.b.p.a.b	ENSGT00530000063410.b.i.a	ENSGT00940000164110.e	ENSGT00950000183019.f.b.b.d.c.b	ENSGT00390000000862.g
Salmo	ANCESTRAL SPECIES	41	ENSGT00390000010372.o.b.a	ENSGT00520000055635.c.a.a.b.e.a	ENSGT00940000156556.h.c	ENSGT00940000157784.c.d.f.b	ENSGT01050000244864.D.t.b	ENSGT01050000244864.C.f.a	ENSGT00730000110915.b.c.a	ENSGT00510000046499.r.a	ENSGT00940000153577.A	ENSGT00390000013113.u	ENSGT00940000157065.y.a.a	ENSGT00990000205068.b	ENSGT00940000159505.v.a #14	ENSGT00940000158589.b.b.c #7	ENSGT00390000003874.a.b.a	ENSGT00950000182836.b.b.b.a.l.b #22	ENSGT00940000159094.e.c.a	ENSGT00940000153470.a.a.a.a.c.a	ENSGT00390000001170.a.b.a	ENSGT00940000159160.h	ENSGT00390000009001	ENSGT00940000156552.c.b.i	ENSGT00940000178309.a.b	ENSGT01030000234607.A.b	ENSGT00530000063410.b.i.a	ENSGT00940000164110.e	ENSGT00950000183019.f.b.b.d.c.b	ENSGT00390000000862.g	ENSGT00940000156160.b.a.e.b.b	ENSGT00940000155270.i.b.c	ENSGT00950000183214.a.b.a.b.f.b.b.l.b
River trout	MODERN SPECIES	32	ENSSTUG00000038537	gsk3ba (ENSSTUG00000038559)	lrrc58a (ENSSTUG00000038928)	fstl1a (ENSSTUG00000038946)	gja8b (ENSSTUG00000039157)	gja5b (ENSSTUG00000039159)	bcl9 (ENSSTUG00000039167)	cbr1 (ENSSTUG00000039226)	setd4 (ENSSTUG00000039243)	cryzl1 (ENSSTUG00000039269)	ITSN1 (ENSSTUG00000039403)	ENSSTUG00000040236	PKNOX1 (ENSSTUG00000040250) #14	TMPRSS3 (ENSSTUG00000040308) #7	pdxkb (ENSSTUG00000040335)	agpat3 (ENSSTUG00000040430) #22	PTH2R (ENSSTUG00000040443)	mgat5 (ENSSTUG00000040541)	TMEM163 (ENSSTUG00000040616)	cpb2 (ENSSTUG00000040657)	ENSSTUG00000040719	raph1b (ENSSTUG00000040779)	ENSSTUG00000041050	ENSSTUG00000041109	mdh1b (ENSSTUG00000041154)	ENSSTUG00000041245	retreg2 (ENSSTUG00000041261)	mdh1b (ENSSTUG00000041334)	ENSSTUG00000041373	ENSSTUG00000041416	cnppd1 (ENSSTUG00000041474)
Atlantic salmon	MODERN SPECIES	8	GSK3B (ENSSSAG00000082990)	LRC58 (ENSSSAG00000007504)	fstl1a (ENSSSAG00000007369)	gja8b (ENSSSAG00000007356)	gja5b (ENSSSAG00000120725)	bcl9 (ENSSSAG00000007293)	DHCA (ENSSSAG00000007266)	setd4 (ENSSSAG00000007257)	ENSSSAG00000087641	cryzl1 (ENSSSAG00000006909)	ENSSSAG00000006749	ENSSSAG00000006712	ENSSSAG00000006699 #14	ENSSSAG00000006674 #7	pdxkb (ENSSSAG00000006375)	plcc (ENSSSAG00000006312) #22	ENSSSAG00000006203	ENSSSAG00000006107	ENSSSAG00000006090	cpb2 (ENSSSAG00000007748)	ENSSSAG00000006012	raph1b (ENSSSAG00000060548)	ENSSSAG00000060437	ENSSSAG00000102619	ENSSSAG00000083857	ENSSSAG00000060420	mdh1b (ENSSSAG00000060346)	retreg2 (ENSSSAG00000060269)	ENSSSAG00000060198	abcb6a (ENSSSAG00000059269)	ENSSSAG00000056169
Oncorhynchus	ANCESTRAL SPECIES	43	ENSGT01000000220200	ENSGT00520000055635.c.a.a.b.e.a	ENSGT00940000156556.h.c	ENSGT00940000157784.c.d.f.b	ENSGT00940000157784.c.d.e	ENSGT01050000244864.D.t.b	ENSGT01050000244864.C.f.a	ENSGT00730000110915.b.c.a	ENSGT00510000046499.r.a	ENSGT00940000153577.A	ENSGT00390000013113.u	ENSGT00940000157065.y.b	ENSGT00940000159505.v.a #14	ENSGT00940000158589.b.b.d.a.a #7	ENSGT00390000003874.a.b.a	ENSGT00950000182836.b.b.b.a.l.b #22	ENSGT00940000159094.e.c	ENSGT00940000153470.a.a.a.a.c.a	ENSGT00390000001170.a.b.a	ENSGT00550000075118.k.b	ENSGT00390000009001	ENSGT00940000156552.c.b.i	ENSGT00940000178309.a.b.a	ENSGT01030000234607.A.b	ENSGT00530000063410.b.j	ENSGT00940000154394.b.a.b.p.a.b	ENSGT00940000164110.e	ENSGT00950000183019.f.b.b.d.c.b	ENSGT00390000000862.g	ENSGT00940000156160.b.a.e.b.b	ENSGT00940000155270.i.b.c
Oncorhynchus_a	ANCESTRAL SPECIES	77	ENSGT00390000003873.n.a #23	ENSGT01000000220200	ENSGT00520000055635.c.a.a.b.e.a	ENSGT00940000156556.h.c	ENSGT00940000157784.c.d.e.a	ENSGT01050000244864.D.t.b	ENSGT01050000244864.C.f.a	ENSGT00730000110915.b.c.a	ENSGT00510000046499.r.a	ENSGT00940000153577.A	ENSGT00390000013113.u	ENSGT00940000157065.y.b	ENSGT00940000159505.v.a #14	ENSGT00940000158589.b.b.d.a.a #7	ENSGT00390000003874.a.b.a	ENSGT00950000182836.b.b.b.a.l.b #22	ENSGT00940000159094.e.c	ENSGT00940000153470.a.a.a.a.c.a	ENSGT00390000001170.a.b.a	ENSGT00550000075118.k.b	ENSGT00390000009001	ENSGT00940000156552.c.b.i	ENSGT00940000178309.a.b.a	ENSGT01030000234607.A.b	ENSGT00940000171355	ENSGT00530000063410.b.j	ENSGT00940000154394.b.a.a.a.b.a.b.b	ENSGT00940000164110.e	ENSGT00950000183019.f.b.b.d.c.b	ENSGT00390000000862.g	ENSGT00940000156160.b.a.e.b.b
Chinook salmon	MODERN SPECIES	31	TRAPPC10 (ENSOTSG00005029982) #23	ENSOTSG00005029995	gsk3ba (ENSOTSG00005029996)	lrrc58a (ENSOTSG00005033118)	fstl1a (ENSOTSG00005033119)	gja8b (ENSOTSG00005033154)	gja5b (ENSOTSG00005033155)	bcl9 (ENSOTSG00005033157)	cbr1 (ENSOTSG00005033158)	setd4 (ENSOTSG00005033159)	cryzl1 (ENSOTSG00005033160)	ITSN1 (ENSOTSG00005033171)	PKNOX1 (ENSOTSG00005033432) #14	TMPRSS3 (ENSOTSG00005033433) #7	pdxkb (ENSOTSG00005033434)	agpat3 (ENSOTSG00005033584) #22	PTH2R (ENSOTSG00005033586)	mgat5 (ENSOTSG00005033675)	TMEM163 (ENSOTSG00005033676)	alg11 (ENSOTSG00005033677)	ENSOTSG00005033678	raph1b (ENSOTSG00005033680)	ENSOTSG00005033683	ENSOTSG00005033682	ENSOTSG00005033684	mdh1b (ENSOTSG00005033685)	ENSOTSG00005033686	ENSOTSG00005033687	retreg2 (ENSOTSG00005033688)	ENSOTSG00005033690	cnppd1 (ENSOTSG00005033692)
Coho salmon	MODERN SPECIES	25	TRAPPC10 (ENSOKIG00005012193) #23	ENSOKIG00005012386	ENSOKIG00005012416	fstl1a (ENSOKIG00005012758)	gja8b (ENSOKIG00005012911)	gja5b (ENSOKIG00005012914)	bcl9 (ENSOKIG00005012919)	cbr1 (ENSOKIG00005012945)	setd4 (ENSOKIG00005012951)	cryzl1 (ENSOKIG00005012963)	ITSN1 (ENSOKIG00005013142)	ENSOKIG00005014388	PKNOX1 (ENSOKIG00005014399) #14	TMPRSS3 (ENSOKIG00005014428) #7	pdxkb (ENSOKIG00005014454)	agpat3 (ENSOKIG00005014611) #22	ENSOKIG00005014622	MGAT5 (ENSOKIG00005014718)	TMEM163 (ENSOKIG00005014740)	alg11 (ENSOKIG00005014761)	ENSOKIG00005014796	raph1b (ENSOKIG00005014835)	ENSOKIG00005015160	ENSOKIG00005015200	mdh1b (ENSOKIG00005015216)	ENSOKIG00005015308	retreg2 (ENSOKIG00005015321)	cnppd1 (ENSOKIG00005015367)	abcb6a (ENSOKIG00005015429)	NRP2 (ENSOKIG00005015676)	ENSOKIG00005015730
Rainbow trout	MODERN SPECIES	28	lrrc58a (ENSOMYG00000002587)	fstl1a (ENSOMYG00000002771)	gja8b (ENSOMYG00000002837)	gja5b (ENSOMYG00000002839)	bcl9 (ENSOMYG00000002910)	ENSOMYG00000075174	cbr1 (ENSOMYG00000002963)	setd4 (ENSOMYG00000002969)	ENSOMYG00000063705	cryzl1 (ENSOMYG00000003093)	ENSOMYG00000004934	ENSOMYG00000006896 #14	ENSOMYG00000064086	ENSOMYG00000006962 #7	pdxkb (ENSOMYG00000077377)	agpat3 (ENSOMYG00000007079) #22	ENSOMYG00000007149	ENSOMYG00000052504	ENSOMYG00000007256	ENSOMYG00000007325	ENSOMYG00000059805	spp2 (ENSOMYG00000007382)	ENSOMYG00000007640	ENSOMYG00000007851	ENSOMYG00000008031	mdh1b (ENSOMYG00000008096)	ENSOMYG00000053822	retreg2 (ENSOMYG00000008253)	cnppd1 (ENSOMYG00000008360)	abcb6a (ENSOMYG00000008750)	ENSOMYG00000009345
Huchen	MODERN SPECIES	567	gsk3ba (ENSHHUG00000027328)	lrrc58a (ENSHHUG00000027398)	fstl1a (ENSHHUG00000027405)	gja8b (ENSHHUG00000027494)	gja5b (ENSHHUG00000027500)	bcl9 (ENSHHUG00000027505)	setd4 (ENSHHUG00000027509)	cbr1 (ENSHHUG00000027511)	cryzl1 (ENSHHUG00000027516)	ITSN1 (ENSHHUG00000027613)	ENSHHUG00000027865	PKNOX1 (ENSHHUG00000027872) #14	ENSHHUG00000027876 #7	ENSHHUG00000027878 #7	pdxkb (ENSHHUG00000027883)	agpat3 (ENSHHUG00000027910) #22	ENSHHUG00000027942	ENSHHUG00000028025	ENSHHUG00000027986
Otomorpha	ANCESTRAL SPECIES	267					ENSGT00520000055635.c.a.b	ENSGT00940000156556.h	ENSGT00940000157784.c.d	ENSGT01050000244864.D	ENSGT01050000244864.C.f.f	ENSGT00510000046499	ENSGT00940000153577.A	ENSGT00390000013113	ENSGT00940000157065	ENSGT00940000158589.b.b #7	ENSGT00390000003874.a.b	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000171515	ENSGT00940000161898	ENSGT00390000011048.w	ENSGT01050000244891.C.c.b.q	ENSGT00530000063715.b	ENSGT00940000166383	ENSGT00940000155814	ENSGT00940000153676.b	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000157874.q.a	ENSGT00940000157872	ENSGT00940000157849.n	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000163243
Otophysi	ANCESTRAL SPECIES	25	ENSGT00530000063534.b	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156556.h	ENSGT00940000157784.c.d	ENSGT01050000244864.D	ENSGT01050000244864.C.f.f	ENSGT00730000110915.b	ENSGT00510000046499	ENSGT00940000153577.A	ENSGT00390000013113	ENSGT00940000157065	ENSGT00940000158589.b.b #7	ENSGT00390000003874.a.b	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000171515	ENSGT00940000161898	ENSGT00390000011048.w	ENSGT01050000244891.C.c.b.q	ENSGT00530000063715.b	ENSGT00940000166383	ENSGT00940000155814	ENSGT00940000153676.b	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000157874.q.a	ENSGT00940000157872	ENSGT00940000157849.n	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000163243
Characiphysae	ANCESTRAL SPECIES	9	ENSGT00530000063534.b	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156556.h	ENSGT00940000157784.c.d	ENSGT01050000244864.D	ENSGT01050000244864.C.f.f	ENSGT00730000110915.b	ENSGT00940000179335	ENSGT00940000153577.A	ENSGT00390000013113	ENSGT00940000157065	ENSGT00940000158589.b.b #7	ENSGT00390000003874.a.b	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000171515	ENSGT00940000161898	ENSGT00390000011048.w	ENSGT01050000244891.C.c.b.q	ENSGT00530000063715.b	ENSGT00940000166383	ENSGT00940000155814	ENSGT00940000153676.b	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000157874.q.a	ENSGT00940000157872	ENSGT00940000157849.n	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000163243
Characiphysae_b	ANCESTRAL SPECIES	117	ENSGT00530000063534.b	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156556.h	ENSGT00940000157784.c.d	ENSGT01050000244864.D	ENSGT01050000244864.C.f.f	ENSGT00730000110915.b	ENSGT00940000179335	ENSGT00940000153577.A	ENSGT00390000013113	ENSGT00940000157065	ENSGT00940000158589.b.b #7	ENSGT00390000003874.a.b	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000171515	ENSGT00390000011048.w	ENSGT01050000244891.C.c.b.q	ENSGT00530000063715.b	ENSGT00940000166383	ENSGT00940000155814	ENSGT00940000153676.b	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000157874.q.a	ENSGT00940000157872	ENSGT00940000157849.n	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000163243	ENSGT00390000008846
Characoidei	ANCESTRAL SPECIES	147	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156556.h	ENSGT00940000157784.c.d	ENSGT01050000244864.D	ENSGT01050000244864.C.f.f	ENSGT00730000110915.b	ENSGT00940000179335	ENSGT00510000046499	ENSGT00940000153577.A	ENSGT00390000013113	ENSGT00940000157065	ENSGT00940000158589.b.b #7	ENSGT00390000003874.a.b	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000171515	ENSGT00390000011048.w	ENSGT01050000244891.C.c.b.q	ENSGT00530000063715.b	ENSGT00940000166383	ENSGT00940000155814	ENSGT00940000153676.b	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000157874.q.a	ENSGT00940000157872	ENSGT00940000157849.n	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000163243	ENSGT00390000008846
Mexicana tetra	MODERN SPECIES	3	lrrc58a (ENSAMXG00000032041)	fstl1a (ENSAMXG00000040246)	gja8b (ENSAMXG00000025640)	gja5b (ENSAMXG00000025639)	bcl9 (ENSAMXG00000012514)	ENSAMXG00000034978	ENSAMXG00000034746	cbr1 (ENSAMXG00000012487)	setd4 (ENSAMXG00000032640)	cryzl1 (ENSAMXG00000037451)	ITSN1 (ENSAMXG00000012436)	ENSAMXG00000012433	ENSAMXG00000012410 #14	ENSAMXG00000012377 #7	pdxkb (ENSAMXG00000012352)	agpat3 (ENSAMXG00000041421) #22	ENSAMXG00000025823	dleu7 (ENSAMXG00000037461)	spryd7a (ENSAMXG00000040876)	ENSAMXG00000041792	kpna3 (ENSAMXG00000012307)	ebpl (ENSAMXG00000041654)	arl11 (ENSAMXG00000012281)	rcbtb1 (ENSAMXG00000042184)	cdadc1 (ENSAMXG00000012223)	cab39l (ENSAMXG00000012212)	ATP11A (ENSAMXG00000018350)	SOX1 (ENSAMXG00000035402)	ENSAMXG00000030734	ENSAMXG00000039391	arhgef7b (ENSAMXG00000035958)
Red-bellied piranha	MODERN SPECIES	59	fstl1a (ENSPNAG00000000939)	gja8b (ENSPNAG00000008349)	gja5b (ENSPNAG00000006802)	bcl9 (ENSPNAG00000029561)	ENSPNAG00000005001	ENSPNAG00000029487	cbr1 (ENSPNAG00000029439)	cbr1 (ENSPNAG00000029415)	setd4 (ENSPNAG00000029275)	cryzl1 (ENSPNAG00000004544)	ITSN1 (ENSPNAG00000004518)	ENSPNAG00000025611	ENSPNAG00000025605 #14	ENSPNAG00000025569 #7	pdxkb (ENSPNAG00000025536)	agpat3 (ENSPNAG00000004913) #22	dleu7 (ENSPNAG00000006544)	spryd7a (ENSPNAG00000025399)	kpna3 (ENSPNAG00000025361)	ebpl (ENSPNAG00000025238)	arl11 (ENSPNAG00000025213)	rcbtb1 (ENSPNAG00000025189)	cdadc1 (ENSPNAG00000025112)	cab39l (ENSPNAG00000025105)	MCF2L (ENSPNAG00000025029)	tubgcp3 (ENSPNAG00000024841)	ATP11A (ENSPNAG00000005022)	SOX1 (ENSPNAG00000024384)	arhgef7b (ENSPNAG00000023914)	ENSPNAG00000023852	lipt1 (ENSPNAG00000023826)
Electric eel	MODERN SPECIES	149	lrrc58a (ENSEEEG00000023552)	fstl1a (ENSEEEG00000023550)	GJA8 (ENSEEEG00000023549)	gja5b (ENSEEEG00000023548)	GJA5 (ENSEEEG00000023547)	bcl9 (ENSEEEG00000023546)	morc3b (ENSEEEG00000023545)	cbr1 (ENSEEEG00000023544)	setd4 (ENSEEEG00000023543)	cryzl1 (ENSEEEG00000023542)	ITSN1 (ENSEEEG00000023539)	ENSEEEG00000023531 #14	ENSEEEG00000023530 #7	ENSEEEG00000023529	pdxkb (ENSEEEG00000023528)	agpat3 (ENSEEEG00000023524) #22	dleu7 (ENSEEEG00000023520)	spryd7a (ENSEEEG00000023517)	kpna3 (ENSEEEG00000023036)	ebpl (ENSEEEG00000023013)	arl11 (ENSEEEG00000023012)	rcbtb1 (ENSEEEG00000023011)	cdadc1 (ENSEEEG00000023010)	cab39l (ENSEEEG00000023007)	MCF2L (ENSEEEG00000023002)	tubgcp3 (ENSEEEG00000023000)	ATP11A (ENSEEEG00000022995)	sox1b (ENSEEEG00000022994)
Channel catfish	MODERN SPECIES	18	lrrc58a (ENSIPUG00000020001)	fstl1a (ENSIPUG00000020011)	gja8b (ENSIPUG00000020046)	GJA5 (ENSIPUG00000020050)	bcl9 (ENSIPUG00000020056)	ENSIPUG00000020078	ENSIPUG00000020083	cbr1 (ENSIPUG00000020108)	setd4 (ENSIPUG00000020120)	cryzl1 (ENSIPUG00000020153)	ITSN1 (ENSIPUG00000020172)	ENSIPUG00000020221	PKNOX1 (ENSIPUG00000020239) #14	ENSIPUG00000020258 #7	pdxkb (ENSIPUG00000020281)	agpat3 (ENSIPUG00000020311) #22	dleu7 (ENSIPUG00000020350)	kcnrg (ENSIPUG00000020361)	spryd7 (ENSIPUG00000020366)	Kpna3 (ENSIPUG00000020383)	ebpl (ENSIPUG00000020403)	arl11 (ENSIPUG00000020426)	rcbtb1 (ENSIPUG00000020428)	cdadc1 (ENSIPUG00000020446)	cab39l (ENSIPUG00000020458)	mcf2l (ENSIPUG00000020494)	tubgcp3 (ENSIPUG00000020648)	ENSIPUG00000020693	atp11a (ENSIPUG00000020705)	SOX1 (ENSIPUG00000020846)	arhgef7 (ENSIPUG00000020874)
Cyprinoidei	ANCESTRAL SPECIES	5	ENSGT00530000063534.b	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156556.h	ENSGT00940000157784.c.d	ENSGT01050000244864.D	ENSGT01050000244864.C.f.f	ENSGT00730000110915.b	ENSGT00510000046499.z.a	ENSGT00940000153577.A	ENSGT00390000013113	ENSGT00940000157065	ENSGT00940000158589.b.b #7	ENSGT00390000003874.a.b	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000171515	ENSGT00390000011048.w	ENSGT01050000244891.C.c.b.q	ENSGT00530000063715.b	ENSGT00940000166383	ENSGT00940000155814	ENSGT00940000153676.b	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000157874.q.a	ENSGT00940000157872	ENSGT00940000157849.n	ENSGT00940000155360.B.k	ENSGT00940000163243	ENSGT00390000008846	ENSGT00940000159130
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	291																ENSGT00950000182836.b.b.b.a.m #22	ENSGT00940000171515.a	ENSGT00390000011048.w.b	ENSGT01050000244891.C.c.b.q.b	ENSGT00530000063715.b.f	ENSGT00940000166383.b	ENSGT00940000155814.k	ENSGT00940000153676.b.i	ENSGT00390000004360.a.b.a.a.b.c	ENSGT00940000157874.q.a.b	ENSGT00940000157872.g	ENSGT00940000157849.n.a	ENSGT00940000155360.B.k.a	ENSGT00940000163243.b	ENSGT00390000008846.d	ENSGT00940000159130.b
Goldfish	MODERN SPECIES	3109								cbr1 (ENSCARG00000047026)	setd4 (ENSCARG00000047045)	cryzl1 (ENSCARG00000047067)	ITSN1 (ENSCARG00000047312)	ENSCARG00000056926	PKNOX1 (ENSCARG00000056936) #14	TMPRSS3 (ENSCARG00000057045) #7	pdxkb (ENSCARG00000057060)	agpat3 (ENSCARG00000057379) #22	dleu7 (ENSCARG00000057393)	spryd7a (ENSCARG00000057412)	kpna3 (ENSCARG00000057526)	ebpl (ENSCARG00000060271)	arl11 (ENSCARG00000060279)	rcbtb1 (ENSCARG00000060291)	cab39l (ENSCARG00000060358)	MCF2L (ENSCARG00000060645)	tubgcp3 (ENSCARG00000065407)	ATP11A (ENSCARG00000065522)	arhgef7b (ENSCARG00000065795)	ENSCARG00000067541	lipt1 (ENSCARG00000067873)	PNPLA6 (ENSCARG00000067906)	ENSCARG00000068056
Cyprininae_a	ANCESTRAL SPECIES	630									ENSGT00510000046499.z.a.a	ENSGT00940000153577.A.e	ENSGT00390000013113.s	ENSGT00940000157065.v	ENSGT00390000008902.kb.l.a.b	ENSGT00940000158589.b.b.a #7	ENSGT00390000003874.a.b.f	ENSGT00950000182836.b.b.b.a.m #22	ENSGT00940000171515.a
Common carp reference	MODERN SPECIES	27	cfap58 (ENSCCRG00000058974)	neurl1aa (ENSCCRG00000066918)	ENSCCRG00000071622	stn1 (ENSCCRG00000036591)	fstl1a (ENSCCRG00000036568)	gja8b (ENSCCRG00000059724)	gja5b (ENSCCRG00000036560)	bcl9 (ENSCCRG00000036555)	cbr1 (ENSCCRG00000016100)	setd4 (ENSCCRG00000016096)	cryzl1 (ENSCCRG00000016091)	ENSCCRG00000023880	ENSCCRG00000029837	ENSCCRG00000024402 #7	pdxkb (ENSCCRG00000015920)	agpat3 (ENSCCRG00000066238) #22	spryd7a (ENSCCRG00000056049)	kpna3 (ENSCCRG00000013681)	ebpl (ENSCCRG00000015744)	rcbtb1 (ENSCCRG00000015729)	cdadc1 (ENSCCRG00000061386)	cab39l (ENSCCRG00000058713)	ENSCCRG00000013453	tubgcp3 (ENSCCRG00000015786)	ENSCCRG00000015839	sox1b (ENSCCRG00000081551)	arhgef7b (ENSCCRG00000022117)	lipt1 (ENSCCRG00000068783)	ENSCCRG00000029288	ENSCCRG00000022089	map2k7 (ENSCCRG00000034605)
Golden-line barbel	MODERN SPECIES	748								cbr1 (ENSSGRG00000030544)	setd4 (ENSSGRG00000030545)	cryzl1 (ENSSGRG00000030548)	ITSN1 (ENSSGRG00000030843)	ENSSGRG00000033153	ENSSGRG00000033154 #14	TMPRSS3 (ENSSGRG00000033160) #7	pdxkb (ENSSGRG00000033163)	agpat3 (ENSSGRG00000033300) #22	dleu7 (ENSSGRG00000033302)	kpna3 (ENSSGRG00000033321)	ebpl (ENSSGRG00000034117)	arl11 (ENSSGRG00000034118)	rcbtb1 (ENSSGRG00000034119)	cdadc1 (ENSSGRG00000034179)	cab39l (ENSSGRG00000034180)	MCF2L (ENSSGRG00000034228)
Cyprininae	ANCESTRAL SPECIES	38	ENSGT00940000166590.mb	ENSGT00510000046499.z.a	ENSGT00940000153577.A.e	ENSGT00390000013113.s	ENSGT00940000157065.v	ENSGT00390000008902.kb.l.a.b	ENSGT00940000153577.A.f	ENSGT00390000013113.t	ENSGT00940000157065.u	ENSGT00390000008902.kb.l.a.a	ENSGT00940000159505.b #14	ENSGT00940000158589.b.b.a #7	ENSGT00390000003874.a.b.f	ENSGT00940000158589.b.b.b #7	ENSGT00390000003874.a.b.e	ENSGT00950000182836.b.b.b.a.n #22	ENSGT00940000171515.b	ENSGT00390000011048.w.a	ENSGT01050000244891.C.c.b.q.a	ENSGT00530000063715.b.e	ENSGT00940000166383.a	ENSGT00940000155814.l	ENSGT00940000153676.b.j	ENSGT00390000004360.a.b.a.a.b.d	ENSGT00940000157874.q.a.a	ENSGT00940000157872.h	ENSGT00940000157849.n.b	ENSGT00940000155360.B.k.b	ENSGT00940000163243.a	ENSGT00390000008846.c	ENSGT00940000159130.a
Goldfish	MODERN SPECIES		suclg1 (ENSCARG00000009818)	ENSCARG00000009811	cfap58 (ENSCARG00000009733)	neurl1aa (ENSCARG00000009723)	SH3PXD2A (ENSCARG00000009683)	lrrc58a (ENSCARG00000009666)	fstl1a (ENSCARG00000009617)	gja8b (ENSCARG00000009598)	gja5b (ENSCARG00000009592)	bcl9 (ENSCARG00000009578)	morc3b (ENSCARG00000030064)	cryzl1 (ENSCARG00000029858)	ITSN1 (ENSCARG00000024109)	ENSCARG00000023873	pdxkb (ENSCARG00000023845)	agpat3 (ENSCARG00000023832) #22	spryd7a (ENSCARG00000023816)	kpna3 (ENSCARG00000023539)	arl11 (ENSCARG00000023504)	rcbtb1 (ENSCARG00000023134)	cdadc1 (ENSCARG00000023111)	cab39l (ENSCARG00000023106)	MCF2L (ENSCARG00000022778)	tubgcp3 (ENSCARG00000022717)	ENSCARG00000022702	ATP11A (ENSCARG00000022535)	sox1b (ENSCARG00000022507)	arhgef7b (ENSCARG00000020751)	ENSCARG00000020114	lipt1 (ENSCARG00000020094)	PNPLA6 (ENSCARG00000014277)
Cyprininae_a	ANCESTRAL SPECIES	66	ENSGT00390000000909.i	ENSGT00940000156556.h.a	ENSGT00940000157784.c.d.a	ENSGT01050000244864.D.e.a	ENSGT01050000244864.C.f.f.b	ENSGT00730000110915.b.e	ENSGT00940000166590.mb	ENSGT00510000046499.z.a.b	ENSGT00940000153577.A.f	ENSGT00390000013113.t	ENSGT00940000157065.u	ENSGT00390000008902.kb.l.a.a	ENSGT00940000159505.b #14	ENSGT00940000158589.b.b.b #7	ENSGT00390000003874.a.b.e	ENSGT00950000182836.b.b.b.a.n #22	ENSGT00940000171515.b	ENSGT00390000011048.w.a	ENSGT01050000244891.C.c.b.q.a	ENSGT00390000011048.w.b	ENSGT01050000244891.C.c.b.q.b	ENSGT00530000063715.b.f	ENSGT00940000166383.a	ENSGT00940000155814.l	ENSGT00940000153676.b.j	ENSGT00390000004360.a.b.a.a.b.d	ENSGT00940000157874.q.a.a	ENSGT00940000157872.h	ENSGT00940000157849.n.b	ENSGT00940000155360.B.k.b	ENSGT00940000163243.a
Common carp reference	MODERN SPECIES	22	lrrc58a (ENSCCRG00000064487)	fstl1a (ENSCCRG00000024571)	gja8b (ENSCCRG00000073119)	gja5b (ENSCCRG00000074145)	bcl9 (ENSCCRG00000015070)	morc3b (ENSCCRG00000024161)	ENSCCRG00000060268	ENSCCRG00000081465	cryzl1 (ENSCCRG00000024163)	ENSCCRG00000070675	ENSCCRG00000055587	ENSCCRG00000016032 #7	pdxkb (ENSCCRG00000061747)	dleu7 (ENSCCRG00000019748)	ENSCCRG00000073096	agpat3 (ENSCCRG00000015761) #22	spryd7a (ENSCCRG00000015462)	kpna3 (ENSCCRG00000082723)	ebpl (ENSCCRG00000013658)	arl11 (ENSCCRG00000015739)	rcbtb1 (ENSCCRG00000013618)	cdadc1 (ENSCCRG00000013606)	cab39l (ENSCCRG00000074971)	ENSCCRG00000015680	tubgcp3 (ENSCCRG00000013430)	ENSCCRG00000057536	ENSCCRG00000026907	arhgef7b (ENSCCRG00000077569)	ENSCCRG00000062970	lipt1 (ENSCCRG00000058177)	ENSCCRG00000039927
Golden-line barbel	MODERN SPECIES	338				gja8b (ENSSGRG00000036120)	gja5b (ENSSGRG00000036118)	bcl9 (ENSSGRG00000036116)	morc3b (ENSSGRG00000036081)	cbr1 (ENSSGRG00000036079)	setd4 (ENSSGRG00000036078)	cryzl1 (ENSSGRG00000036037)	ITSN1 (ENSSGRG00000035039)	ENSSGRG00000035020	ENSSGRG00000035018 #14	TMPRSS3 (ENSSGRG00000035015) #7	pdxkb (ENSSGRG00000035005)	agpat3 (ENSSGRG00000035002) #22	dleu7 (ENSSGRG00000034999)	dleu7 (ENSSGRG00000034998)	kpna3 (ENSSGRG00000033197)	ebpl (ENSSGRG00000033176)	arl11 (ENSSGRG00000033175)	arl11 (ENSSGRG00000033174)	rcbtb1 (ENSSGRG00000033173)	cdadc1 (ENSSGRG00000033171)	cab39l (ENSSGRG00000033167)	ENSSGRG00000033164	tubgcp3 (ENSSGRG00000032857)	ATP11A (ENSSGRG00000032229)	arhgef7b (ENSSGRG00000030952)	ENSSGRG00000030930	lipt1 (ENSSGRG00000030929)
Zebrafish	MODERN SPECIES		gja8b (ENSDARG00000015076)	gja5b (ENSDARG00000069450)	bcl9 (ENSDARG00000036687)	morc3b (ENSDARG00000043271)	cbr1 (ENSDARG00000036587)	mhc1zba (ENSDARG00000036588)	mhc1zca (ENSDARG00000069471)	mhc1zea (ENSDARG00000001470)	setd4 (ENSDARG00000036592)	cryzl1 (ENSDARG00000026902)	ITSN1 (ENSDARG00000000086)	ENSDARG00000089853	PKNOX1 (ENSDARG00000036542) #14	TMPRSS3 (ENSDARG00000036545) #7	pdxkb (ENSDARG00000036546)	agpat3 (ENSDARG00000036549) #22	dleu7 (ENSDARG00000094160)	spryd7a (ENSDARG00000052624)	kpna3 (ENSDARG00000052641)	ebpl (ENSDARG00000036636)	arl11 (ENSDARG00000036637)	rcbtb1 (ENSDARG00000036645)	cdadc1 (ENSDARG00000036650)	cab39l (ENSDARG00000036658)	si:busm1-105l16.2 (ENSDARG00000070858)	MCF2L (ENSDARG00000075859)	tubgcp3 (ENSDARG00000029133)	ATP11A (ENSDARG00000008413)	ENSDARG00000053340	sox1b (ENSDARG00000008131)	ENSDARG00000052677
Clupeiformes	ANCESTRAL SPECIES	68	ENSGT00440000033720.a.a.b	ENSGT01020000230582	ENSGT00940000156556.h	ENSGT00940000157784.c.d	ENSGT01050000244864.D	ENSGT01050000244864.C.f.f	ENSGT00940000160457.a	ENSGT00510000046499	ENSGT00940000153577.A	ENSGT00390000013113	ENSGT00940000157065.w.a	ENSGT00390000008902.kb	ENSGT00940000159505 #14	ENSGT00940000158589.b.b #7	ENSGT00390000003874.a.b	ENSGT00950000182836.b.b.b.a #22	ENSGT00940000171515	ENSGT00390000011048.w	ENSGT01050000244891.C.c.b.q	ENSGT00530000063715.b	ENSGT00940000166383	ENSGT00940000155814	ENSGT01100000263563.c.a.b	ENSGT00940000157883.a.b.f	ENSGT00950000182883.b.b	ENSGT00940000155953.q.a	ENSGT00940000159262.d	ENSGT00940000153518.d.b.b	ENSGT00940000160532.h.a	ENSGT00650000093443	ENSGT00940000156894.c
Denticle herring	MODERN SPECIES	15	STS (ENSDCDG00000000963)	anos1a (ENSDCDG00000001086)	ENSDCDG00000001189	lrrc58a (ENSDCDG00000001322)	fstl1a (ENSDCDG00000001332)	gja8b (ENSDCDG00000001358)	gja5b (ENSDCDG00000001360)	bcl9 (ENSDCDG00000001363)	morc3b (ENSDCDG00000001368)	cbr1 (ENSDCDG00000001369)	cryzl1 (ENSDCDG00000001377)	ITSN1 (ENSDCDG00000001544)	PKNOX1 (ENSDCDG00000002847) #14	ENSDCDG00000002850 #7	pdxkb (ENSDCDG00000002856)	agpat3 (ENSDCDG00000002869) #22	dleu7 (ENSDCDG00000002876)	spryd7a (ENSDCDG00000002886)	kpna3 (ENSDCDG00000003195)	ebpl (ENSDCDG00000003898)	arl11 (ENSDCDG00000003909)	rcbtb1 (ENSDCDG00000003920)	ENSDCDG00000003933	cckbra (ENSDCDG00000003940)	cycsb (ENSDCDG00000003946)	nxph2b (ENSDCDG00000003948)	spoplb (ENSDCDG00000003949)	ENSDCDG00000003963	lims1 (ENSDCDG00000004001)	ENSDCDG00000004208	ENSDCDG00000013061
Atlantic herring	MODERN SPECIES	13	ENSCHAG00000013446	pudp (ENSCHAG00000013432)	ENSCHAG00000013418	ENSCHAG00000012334	pip5k1ba (ENSCHAG00000012080)	tjp2a (ENSCHAG00000010439)	ENSCHAG00000010378	ENSCHAG00000010366	ENSCHAG00000010350	smc5 (ENSCHAG00000010322)	ENSCHAG00000010313	ENSCHAG00000010285 #14	PKNOX1 (ENSCHAG00000010240) #14	ENSCHAG00000010175 #7	pdxkb (ENSCHAG00000009627)	agpat3 (ENSCHAG00000009599) #22	ENSCHAG00000009496	ENSCHAG00000009472	ola1 (ENSCHAG00000009263)	GPR155 (ENSCHAG00000009142)	WIPF1 (ENSCHAG00000009130)	chrna1 (ENSCHAG00000008775)	atp5mc3b (ENSCHAG00000008641)	lnpk (ENSCHAG00000008620)	PTCD1 (ENSCHAG00000008463)	mtx2 (ENSCHAG00000008327)	pibf1 (ENSCHAG00000008292)	KLF5 (ENSCHAG00000008282)	ENSCHAG00000008271	klf12a (ENSCHAG00000008249)	gnrh2 (ENSCHAG00000008228)
Spotted gar	MODERN SPECIES	655	ENSLOCG00000004158	ENSLOCG00000004142	ENSLOCG00000004132	TMEM50B (ENSLOCG00000004113)	ENSLOCG00000004103	ENSLOCG00000004064 #21	RSPH1 (ENSLOCG00000004034) #9	slc37a1 (ENSLOCG00000003987) #10	PDE9A (ENSLOCG00000003918) #11	wdr4 (ENSLOCG00000003903) #12	ENSLOCG00000003890 #13	pknox1.1 (ENSLOCG00000003857) #14	ENSLOCG00000003832 #7	ENSLOCG00000003820	pdxka (ENSLOCG00000003790)	agpat3 (ENSLOCG00000003758) #22	TRAPPC10 (ENSLOCG00000003708) #23	pwp2h (ENSLOCG00000003663) #24	mbnl2 (ENSLOCG00000003634)	rap2ab (ENSLOCG00000003615)	ENSLOCG00000003595	kpnb3 (ENSLOCG00000003556)	FARP1 (ENSLOCG00000003520)	stk24b (ENSLOCG00000003474)	slc15a1b (ENSLOCG00000003424)	DOCK9 (ENSLOCG00000003216)	GPR18 (ENSLOCG00000017775)	gpr183b (ENSLOCG00000017774)	ubac2 (ENSLOCG00000003185)	si:ch211-184m13.4 (ENSLOCG00000017773)	tm9sf2 (ENSLOCG00000003128)
Reedfish	MODERN SPECIES	12	ENSECRG00000003373	ENSECRG00000003391	siah1 (ENSECRG00000003412)	trim3b (ENSECRG00000003434)	smpd1 (ENSECRG00000003451)	ENSECRG00000003461 #12	ENSECRG00000003470	PKNOX1 (ENSECRG00000003484) #14	ilk (ENSECRG00000003496)	u2af1 (ENSECRG00000003513) #16	cbsb (ENSECRG00000003539) #15	ENSECRG00000003570 #9	RRP1B (ENSECRG00000003580) #21	ENSECRG00000003596	pdxka (ENSECRG00000003602)	agpat3 (ENSECRG00000003615) #22	TRAPPC10 (ENSECRG00000003635) #23	pwp2h (ENSECRG00000003662) #24	gatd3 (ENSECRG00000003682)	ENSECRG00000003714	ENSECRG00000003827	cckbra (ENSECRG00000003834)	CNGA4 (ENSECRG00000003839)	fhip1b (ENSECRG00000003851)	ENSECRG00000003858	ENSECRG00000003862	ENSECRG00000003872	ENSECRG00000003883	sap18 (ENSECRG00000003892)	lats2 (ENSECRG00000003898)	xpo4 (ENSECRG00000003966)
Elephant shark	MODERN SPECIES	1595	abcg1 (ENSCMIG00000017429)	ENSCMIG00000017444 #7	ADAMTS5 (ENSCMIG00000017456)	ADAMTS1 (ENSCMIG00000017460)	appb (ENSCMIG00000017578)	WDR4 (ENSCMIG00000017823) #12	ENSCMIG00000017830 #11	ENSCMIG00000017832	slc37a1 (ENSCMIG00000017837) #10	RSPH1 (ENSCMIG00000017856) #9	RRP1 (ENSCMIG00000017860) #21	ENSCMIG00000017863	pdxka (ENSCMIG00000017870)	ENSCMIG00000017877	TRAPPC10 (ENSCMIG00000017905) #23	agpat3 (ENSCMIG00000017972) #22	pwp2h (ENSCMIG00000017979) #24	GBE1 (ENSCMIG00000017987)	cadm2a (ENSCMIG00000018019)	gatd3 (ENSCMIG00000018055)	ROBO1 (ENSCMIG00000018180)	robo2 (ENSCMIG00000018396)	PARD3 (ENSCMIG00000018447)
Cyclostomata	ANCESTRAL SPECIES	197																ENSGT00950000182836.b.b.b.a #22	ENSGT00390000010799	ENSGT00390000003873 #23
Lamprey	MODERN SPECIES	127															ENSPMAG00000006334	agpat3 (ENSPMAG00000006339) #22	rpl13a (ENSPMAG00000006362)	ENSPMAG00000006472 #23	ENSPMAG00000006485	pdxkb (ENSPMAG00000006494)	bves (ENSPMAG00000006517)	ENSPMAG00000006523
Hagfish	MODERN SPECIES	995														ENSEBUG00000007638	zgc:101858 (ENSEBUG00000003770)	ENSEBUG00000004260 #22	rpl13a (ENSEBUG00000007234)	ENSEBUG00000012056 #23	ENSEBUG00000009064 #23	txnl4b (ENSEBUG00000006810)	ENSEBUG00000006632	ENSEBUG00000015332	ENSEBUG00000005092	mettl14 (ENSEBUG00000006504)	ENSEBUG00000007946	ENSEBUG00000015125	ENSEBUG00000002568	nudc (ENSEBUG00000001914)	ENSEBUG00000009860	ENSEBUG00000014722	ENSEBUG00000004361
Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000182836.b.b.b.b ##22
Gnathostomata	ANCESTRAL SPECIES	305												ENSGT00390000009877	ENSGT00940000155310	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT01030000234985	ENSGT00940000155208	ENSGT00940000155089	ENSGT00390000013943
Euteleostomi	ANCESTRAL SPECIES	156	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00420000030417	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT01060000248589.D	ENSGT00390000012569.a	ENSGT00940000165091	ENSGT00940000153511.a	ENSGT01010000222287.B.b.a.b.a	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT01030000234985	ENSGT00940000155208	ENSGT00940000155089	ENSGT00390000013943
Sarcopterygii	ANCESTRAL SPECIES	209				ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00420000030417	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT01030000234985	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00390000013943
Coelacanth	MODERN SPECIES	2517																AGPAT4 (ENSLACG00000022103) ##22
Tetrapoda	ANCESTRAL SPECIES	79				ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00420000030417	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT01030000234985	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00390000013943	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000157993	ENSGT00390000004172	ENSGT01090000260082.d.b	ENSGT00940000160610
Amniota	ANCESTRAL SPECIES	1	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00420000030417	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00950000186343	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000162065	ENSGT00940000155089	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B
Sauria	ANCESTRAL SPECIES	1	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956.j	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00950000186343	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089.g	ENSGT00940000162065	ENSGT00940000155089.h	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877
Lepidosauria	ANCESTRAL SPECIES		ENSGT00530000063927.a.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956.j	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00950000186343	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089.g	ENSGT00940000155089.h	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B
Episquamata	ANCESTRAL SPECIES		ENSGT00940000168209	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956.j	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00950000186343	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT01030000234985	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089.g	ENSGT00940000155089.h	ENSGT00390000013943	ENSGT01030000234639.A.a.c.a.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B
Laterata	ANCESTRAL SPECIES	4	ENSGT00960000189534	ENSGT00940000168209	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956.j	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089.g	ENSGT00940000155089.h	ENSGT00390000013943	ENSGT01030000234639.A.a.c.a.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B
Common wall lizard	MODERN SPECIES	11	CCR6 (ENSPMRG00000004939)	CEP43 (ENSPMRG00000004931)	RNASET2 (ENSPMRG00000004913)	RPS6KA2 (ENSPMRG00000002868)	MPC1 (ENSPMRG00000002351)	SFT2D1 (ENSPMRG00000002343)	PRR18 (ENSPMRG00000002338)	ENSPMRG00000002328	TBXT (ENSPMRG00000002319)	PDE10A (ENSPMRG00000002283)	C6orf118 (ENSPMRG00000002274)	QKI (ENSPMRG00000002260)	PACRG (ENSPMRG00000002251)	ENSPMRG00000002245	PRKN (ENSPMRG00000002228)	AGPAT4 (ENSPMRG00000002221) ##22	ENSPMRG00000002214	MAP3K4 (ENSPMRG00000002197)	ENSPMRG00000002175	SLC22A3 (ENSPMRG00000002162)	ENSPMRG00000002157	ENSPMRG00000002151	IGF2R (ENSPMRG00000001320)	ENSPMRG00000000891	PNLDC1 (ENSPMRG00000000755)	ENSPMRG00000000709	TCP1 (ENSPMRG00000000681)	ACAT2 (ENSPMRG00000000659)	WTAP (ENSPMRG00000000645)	SOD2 (ENSPMRG00000000626)	ENSPMRG00000000612
Argentine black and white tegu	MODERN SPECIES	2	CEP43 (ENSSMRG00000022175)	RNASET2 (ENSSMRG00000022176)	RPS6KA2 (ENSSMRG00000022178)	MPC1 (ENSSMRG00000022180)	SFT2D1 (ENSSMRG00000022182)	PRR18 (ENSSMRG00000022183)	TBXT (ENSSMRG00000022186)	PDE10A (ENSSMRG00000022188)	C6orf118 (ENSSMRG00000022189)	ENSSMRG00000022193	ENSSMRG00000022194	QKI (ENSSMRG00000022196)	PACRG (ENSSMRG00000022198)	ENSSMRG00000022199	PRKN (ENSSMRG00000022201)	AGPAT4 (ENSSMRG00000022202) ##22	MAP3K4 (ENSSMRG00000022204)	ENSSMRG00000022205	SLC22A3 (ENSSMRG00000022213)	ENSSMRG00000022214	ENSSMRG00000022215	IGF2R (ENSSMRG00000022216)	ENSSMRG00000022217	ENSSMRG00000022218	PNLDC1 (ENSSMRG00000022220)	TCP1 (ENSSMRG00000022221)	ACAT2 (ENSSMRG00000022224)	WTAP (ENSSMRG00000022225)	SOD2 (ENSSMRG00000022226)	FNDC1 (ENSSMRG00000022228)	TAGAP (ENSSMRG00000022230)
Toxicofera	ANCESTRAL SPECIES		ENSGT00530000063927.a.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956.j	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00950000186343	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT01030000234985	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089.g	ENSGT00940000155089.h	ENSGT00390000013943	ENSGT01030000234639.A.a.d	ENSGT01030000234639.A.a.c.b	ENSGT01030000234639.A.a.c.a.b	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931
Elapidae	ANCESTRAL SPECIES		ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956.j	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00950000186343	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT01030000234985	ENSGT00940000155208.r	ENSGT00940000160810	ENSGT00940000155089.g	ENSGT00940000155089.h	ENSGT00390000013943	ENSGT01030000234639.A.a.d	ENSGT01030000234639.A.a.c.b	ENSGT01030000234639.A.a.c.a.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931
Elapidae_a	ANCESTRAL SPECIES	2	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956.j	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00950000186343	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT01030000234985	ENSGT00940000155208.r	ENSGT00940000160810	ENSGT00940000155089.g	ENSGT00940000155089.h	ENSGT00390000013943	ENSGT01030000234639.A.a.d	ENSGT01030000234639.A.a.c.b	ENSGT01030000234639.A.a.c.a.a	ENSGT01030000234639.A.a.c.a.b	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B
Acanthophiinae	ANCESTRAL SPECIES	3	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956.j	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00950000186343	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT01030000234985	ENSGT00940000155208.r	ENSGT00940000160810	ENSGT00940000155089.g	ENSGT00940000155089.h	ENSGT00390000013943	ENSGT01030000234639.A.a.d	ENSGT01030000234639.A.a.c.b	ENSGT01030000234639.A.a.c.a.a	ENSGT01030000234639.A.a.c.a.b	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B
Eastern brown snake	MODERN SPECIES	26	ENSPTXG00000008546	ENSPTXG00000008545	CEP43 (ENSPTXG00000008544)	RNASET2 (ENSPTXG00000008543)	RPS6KA2 (ENSPTXG00000008542)	MPC1 (ENSPTXG00000008541)	SFT2D1 (ENSPTXG00000008540)	PRR18 (ENSPTXG00000008539)	TBXT (ENSPTXG00000008538)	PDE10A (ENSPTXG00000008485)	C6orf118 (ENSPTXG00000008484)	QKI (ENSPTXG00000008483)	PACRG (ENSPTXG00000008482)	ENSPTXG00000008481	PRKN (ENSPTXG00000008480)	AGPAT4 (ENSPTXG00000008479) ##22	ENSPTXG00000008478	MAP3K4 (ENSPTXG00000007968)	ENSPTXG00000007960	SLC22A3 (ENSPTXG00000007958)	ENSPTXG00000007957	ENSPTXG00000007955	IGF2R (ENSPTXG00000001694)	ENSPTXG00000001528	ENSPTXG00000001525	ENSPTXG00000001522	PNLDC1 (ENSPTXG00000001515)	MRPL18 (ENSPTXG00000001509)	ACAT2 (ENSPTXG00000001498)	TCP1 (ENSPTXG00000001496)	WTAP (ENSPTXG00000001493)
Mainland tiger snake	MODERN SPECIES	70	CEP43 (ENSNSUG00000014936)	RNASET2 (ENSNSUG00000014993)	RPS6KA2 (ENSNSUG00000014994)	MPC1 (ENSNSUG00000014995)	SFT2D1 (ENSNSUG00000014996)	TBXT (ENSNSUG00000014997)	PDE10A (ENSNSUG00000014998)	C6orf118 (ENSNSUG00000015018)	QKI (ENSNSUG00000015021)	ENSNSUG00000015022	PACRG (ENSNSUG00000015023)	ENSNSUG00000015024	PRKN (ENSNSUG00000015025)	ENSNSUG00000015026	ENSNSUG00000015027	AGPAT4 (ENSNSUG00000015028) ##22	MAP3K4 (ENSNSUG00000015033)	ENSNSUG00000015519	ENSNSUG00000015529	SLC22A3 (ENSNSUG00000015711)	ENSNSUG00000015712	ENSNSUG00000015713	IGF2R (ENSNSUG00000015715)	ENSNSUG00000015717	ENSNSUG00000015718	ENSNSUG00000015719	ENSNSUG00000015720	MRPL18 (ENSNSUG00000015722)	TCP1 (ENSNSUG00000015723)	ACAT2 (ENSNSUG00000015727)	WTAP (ENSNSUG00000015728)
Blue-lipped sea krait	MODERN SPECIES	1041																AGPAT4 (ENSLLTG00000005502) ##22
Indian cobra	MODERN SPECIES		ENSNNAG00000009035	CEP43 (ENSNNAG00000009119)	RNASET2 (ENSNNAG00000009189)	RPS6KA2 (ENSNNAG00000009365)	MPC1 (ENSNNAG00000012739)	SFT2D1 (ENSNNAG00000012757)	PRR18 (ENSNNAG00000012767)	TBXT (ENSNNAG00000012781)	PDE10A (ENSNNAG00000012894)	ENSNNAG00000013280	C6orf118 (ENSNNAG00000013295)	QKI (ENSNNAG00000013315)	PACRG (ENSNNAG00000013371)	ENSNNAG00000013395	PRKN (ENSNNAG00000013405)	AGPAT4 (ENSNNAG00000013435) ##22	MAP3K4 (ENSNNAG00000013454)	ENSNNAG00000013607	ENSNNAG00000013630	ENSNNAG00000013701	ENSNNAG00000013719	SLC22A3 (ENSNNAG00000013742)	ENSNNAG00000013839	ENSNNAG00000013902	IGF2R (ENSNNAG00000013937)	ENSNNAG00000014108	ENSNNAG00000014119	PNLDC1 (ENSNNAG00000014137)	MRPL18 (ENSNNAG00000014226)	TCP1 (ENSNNAG00000014238)	ACAT2 (ENSNNAG00000014276)
Lizard	MODERN SPECIES		SASH1 (ENSACAG00000007050)	UST (ENSACAG00000007028)	ENSACAG00000034580	ENSACAG00000039144	ENSACAG00000041987	ENSACAG00000038505	QKI (ENSACAG00000003270)	ENSACAG00000037263	PACRG (ENSACAG00000003319)	ENSACAG00000035215	ENSACAG00000040389	PRKN (ENSACAG00000002888)	ENSACAG00000035210	ENSACAG00000044906	ENSACAG00000038927	AGPAT4 (ENSACAG00000002997) ##22	MAP3K4 (ENSACAG00000003094)	ENSACAG00000044185	ENSACAG00000003225	SLC22A3 (ENSACAG00000003423)	ENSACAG00000003452	ENSACAG00000003650	IGF2R (ENSACAG00000003664)	ENSACAG00000035532	ENSACAG00000004224	ENSACAG00000045067	PNLDC1 (ENSACAG00000013667)	ENSACAG00000043187	MRPL18 (ENSACAG00000004244)	TCP1 (ENSACAG00000004253)	ENSACAG00000041299
tuatara	MODERN SPECIES	319													ENSSPUG00000003293	ENSSPUG00000003309	ENSSPUG00000003321	AGPAT4 (ENSSPUG00000003332) ##22	ENSSPUG00000003356	ENSSPUG00000003382	ENSSPUG00000003393	ENSSPUG00000003402	ENSSPUG00000003415	ENSSPUG00000003552	SLC22A3 (ENSSPUG00000004269)	ENSSPUG00000004297	ENSSPUG00000004340	IGF2R (ENSSPUG00000004409)	ENSSPUG00000004551	ENSSPUG00000004560	ENSSPUG00000004594	PNLDC1 (ENSSPUG00000004627)	MRPL18 (ENSSPUG00000004732)
Archelosauria	ANCESTRAL SPECIES	1	ENSGT00990000203619.A.b.b.a	ENSGT00940000168209	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956.j	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089.g	ENSGT00940000155089.h	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B
Archosauria	ANCESTRAL SPECIES	3	ENSGT00990000203619.A.b.b.a	ENSGT00940000168209	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956.j	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT01030000234985	ENSGT00940000155208.v	ENSGT00940000155208.u.b	ENSGT00940000155208.u.a	ENSGT00940000160810	ENSGT00940000155089.g	ENSGT00940000162065	ENSGT00940000155089.h	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B
Aves	ANCESTRAL SPECIES	12	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956.j	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208.v	ENSGT00940000155208.u.b	ENSGT00940000155208.u.a	ENSGT00940000160810	ENSGT00940000155089.g	ENSGT00940000162065	ENSGT00940000155089.h	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931
Neognathae	ANCESTRAL SPECIES	2	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956.j	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208.u.b.b	ENSGT00940000155208.u.b.a.a.a	ENSGT00940000155208.u.a	ENSGT00940000160810	ENSGT00940000155089.g	ENSGT00940000162065	ENSGT00940000155089.h	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931
Neognathae_b	ANCESTRAL SPECIES	1	ENSGT00530000063359.A	ENSGT00530000063927.a.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00990000212037	ENSGT00940000159956.j	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208.u.b.b	ENSGT00940000155208.u.b.a.b	ENSGT00940000155208.u.a	ENSGT00940000160810	ENSGT00940000155089.g	ENSGT00940000162065	ENSGT00940000155089.h	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931
Neognathae_c	ANCESTRAL SPECIES	5	ENSGT00530000063927.a.a	ENSGT00960000189534	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00990000212037	ENSGT00940000159956.j	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208.u.b.b	ENSGT00940000155208.u.b.a.b	ENSGT00940000155208.u.a	ENSGT00940000160810	ENSGT00940000155089.g	ENSGT00940000155089.h	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877
Golden eagle	MODERN SPECIES	24	ENSACCG00020001063	ENSACCG00020001075	ENSACCG00020001090	CCR6 (ENSACCG00020001101)	CEP43 (ENSACCG00020001119)	RNASET2 (ENSACCG00020001160)	ENSACCG00020001176	RPS6KA2 (ENSACCG00020001205)	MPC1 (ENSACCG00020001249)	SFT2D1 (ENSACCG00020001265)	TBXT (ENSACCG00020001297)	PDE10A (ENSACCG00020001331)	QKI (ENSACCG00020001360)	PACRG (ENSACCG00020001381)	PRKN (ENSACCG00020001423)	AGPAT4 (ENSACCG00020001461) ##22	MAP3K4 (ENSACCG00020001556)	ENSACCG00020001718	SLC22A3 (ENSACCG00020001790)	ENSACCG00020001825	ENSACCG00020001849	IGF2R (ENSACCG00020003984)	MAS1 (ENSACCG00020004937)	PNLDC1 (ENSACCG00020004951)	MRPL18 (ENSACCG00020004966)	TCP1 (ENSACCG00020004976)	ACAT2 (ENSACCG00020004990)	WTAP (ENSACCG00020005003)	SOD2 (ENSACCG00020005017)	FNDC1 (ENSACCG00020005050)	SF3B5 (ENSACCG00020005080)
Kakapo	MODERN SPECIES	2	UNC93A (ENSSHBG00005020596)	ENSSHBG00005020595	ENSSHBG00005020591	CCR6 (ENSSHBG00005020586)	CEP43 (ENSSHBG00005020582)	RNASET2 (ENSSHBG00005020575)	RPS6KA2 (ENSSHBG00005020566)	MPC1 (ENSSHBG00005020562)	SFT2D1 (ENSSHBG00005020559)	PRR18 (ENSSHBG00005020555)	TBXT (ENSSHBG00005020548)	PDE10A (ENSSHBG00005020493)	QKI (ENSSHBG00005020433)	PACRG (ENSSHBG00005020428)	PRKN (ENSSHBG00005020412)	AGPAT4 (ENSSHBG00005020401) ##22	ENSSHBG00005020341	ENSSHBG00005020337	ENSSHBG00005020334	ENSSHBG00005020135	SLC22A3 (ENSSHBG00005020081)	SLC22A2 (ENSSHBG00005020076)	IGF2R (ENSSHBG00005013283)	MAS1 (ENSSHBG00005011587)	PNLDC1 (ENSSHBG00005011555)	MRPL18 (ENSSHBG00005011525)	TCP1 (ENSSHBG00005011488)	ACAT2 (ENSSHBG00005011447)	WTAP (ENSSHBG00005011419)	SOD2 (ENSSHBG00005011403)	ENSSHBG00005011358
Passeriformes	ANCESTRAL SPECIES	2	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00530000063927.a.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00990000212037	ENSGT00940000159956.j	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00940000157912	ENSGT00940000156543	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208.u.b.b	ENSGT00390000002210.c.a	ENSGT00390000003812	ENSGT00940000155636	ENSGT00940000157048	ENSGT00940000153408.A	ENSGT00950000183100.B	ENSGT00940000153766.A	ENSGT00390000003256	ENSGT00940000164045	ENSGT00940000160761	ENSGT00940000164531	ENSGT00390000000614	ENSGT00440000037341.a
Great tit	MODERN SPECIES	22	AFDN (ENSPMJG00000001693)	UNC93A (ENSPMJG00000001629)	ENSPMJG00000001619	CCR6 (ENSPMJG00000001598)	CEP43 (ENSPMJG00000001586)	RNASET2 (ENSPMJG00000001581)	ENSPMJG00000001578	RPS6KA2 (ENSPMJG00000001558)	MPC1 (ENSPMJG00000001484)	SFT2D1 (ENSPMJG00000001481)	TBXT (ENSPMJG00000001409)	PDE10A (ENSPMJG00000001349)	QKI (ENSPMJG00000001265)	PACRG (ENSPMJG00000001232)	PRKN (ENSPMJG00000001036)	AGPAT4 (ENSPMJG00000000867) ##22	MAP3K4 (ENSPMJG00000000617)	ENSPMJG00000000606	ENSPMJG00000000596	ENSPMJG00000000582	MAD2L1BP (ENSPMJG00000000572)	GTPBP2 (ENSPMJG00000000553)	POLH (ENSPMJG00000000538)	XPO5 (ENSPMJG00000000397)	POLR1C (ENSPMJG00000000376)	YIPF3 (ENSPMJG00000000350)	LRRC73 (ENSPMJG00000000341)	ENSPMJG00000000325	DLK2 (ENSPMJG00000000211)	ENSPMJG00000000117	ZNF318 (ENSPMJG00000000093)
Passeriformes_d	ANCESTRAL SPECIES	2	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00530000063927.a.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956.j	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00940000157912	ENSGT00940000156543	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208.u.b.b	ENSGT00390000002210.c.a	ENSGT00390000003812	ENSGT00940000155636	ENSGT00940000157048	ENSGT00940000153408.A	ENSGT00950000183100.B	ENSGT00940000153766.A	ENSGT00390000003256	ENSGT00940000164045	ENSGT00940000160761	ENSGT00940000164531	ENSGT00390000000614	ENSGT00440000037341.a
Flycatcher	MODERN SPECIES	21	KIF25 (ENSFALG00000012354)	AFDN (ENSFALG00000012348)	ENSFALG00000012339	CCR6 (ENSFALG00000012331)	CEP43 (ENSFALG00000012317)	RNASET2 (ENSFALG00000012299)	ENSFALG00000026823	RPS6KA2 (ENSFALG00000012267)	MPC1 (ENSFALG00000029027)	SFT2D1 (ENSFALG00000012238)	TBXT (ENSFALG00000012218)	PDE10A (ENSFALG00000012196)	QKI (ENSFALG00000012183)	PACRG (ENSFALG00000028276)	PRKN (ENSFALG00000012173)	AGPAT4 (ENSFALG00000012170) ##22	MAP3K4 (ENSFALG00000012168)	ENSFALG00000012162	MAD2L1BP (ENSFALG00000012156)	GTPBP2 (ENSFALG00000012153)	POLH (ENSFALG00000012144)	XPO5 (ENSFALG00000012130)	POLR1C (ENSFALG00000012111)	YIPF3 (ENSFALG00000012092)	LRRC73 (ENSFALG00000012083)	ENSFALG00000012158	ENSFALG00000012070	DLK2 (ENSFALG00000028588)	ENSFALG00000012056	ZNF318 (ENSFALG00000012050)	FAM98A (ENSFALG00000012034)
Passeriformes_g	ANCESTRAL SPECIES	1	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00530000063927.a.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956.j	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00940000157912	ENSGT00940000156543	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208.u.b.b	ENSGT00390000002210.c.a	ENSGT00390000003812	ENSGT00940000155636	ENSGT00940000157048	ENSGT00940000153408.A	ENSGT00950000183100.B	ENSGT00940000153766.A	ENSGT00390000003256	ENSGT00940000164045	ENSGT00940000160761	ENSGT00940000164531	ENSGT00390000000614	ENSGT00440000037341.a
Passeroidea	ANCESTRAL SPECIES		ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00530000063927.a.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956.j	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00940000157912	ENSGT00940000156543	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208.u.b.b	ENSGT00390000002210.c.a	ENSGT00390000003812	ENSGT00940000155636	ENSGT00940000157048	ENSGT00940000153408.A	ENSGT00950000183100.B	ENSGT00940000153766.A	ENSGT00390000003256	ENSGT00940000164045	ENSGT00940000160761	ENSGT00940000164531	ENSGT00390000000614	ENSGT00440000037341.a
Common canary	MODERN SPECIES	1	SUPT7L (ENSSCAG00000010777)	ENSSCAG00000010782	LRFN2 (ENSSCAG00000010789)	MOCS1 (ENSSCAG00000010805)	DAAM2 (ENSSCAG00000010821)	KIF6 (ENSSCAG00000010863)	KCNK16 (ENSSCAG00000010883)	KCNK17 (ENSSCAG00000010889)	KCNK5 (ENSSCAG00000010899)	RNASET2 (ENSSCAG00000010909)	RPS6KA2 (ENSSCAG00000010979)	MPC1 (ENSSCAG00000011139)	SFT2D1 (ENSSCAG00000011142)	TBXT (ENSSCAG00000011145)	PRKN (ENSSCAG00000011159)	AGPAT4 (ENSSCAG00000011164) ##22	MAP3K4 (ENSSCAG00000011173)	ENSSCAG00000011197	ENSSCAG00000011226	MAD2L1BP (ENSSCAG00000011236)	GTPBP2 (ENSSCAG00000011243)	POLH (ENSSCAG00000011258)	XPO5 (ENSSCAG00000011278)	POLR1C (ENSSCAG00000011320)	YIPF3 (ENSSCAG00000011383)	LRRC73 (ENSSCAG00000011465)	ENSSCAG00000011471	DLK2 (ENSSCAG00000011474)	ENSSCAG00000011480	ZNF318 (ENSSCAG00000011502)	FAM98A (ENSSCAG00000011521)
Medium ground finch	MODERN SPECIES	2	KIF25 (ENSGFOG00000002173)	AFDN (ENSGFOG00000002033)	UNC93A (ENSGFOG00000001997)	ENSGFOG00000001983	CCR6 (ENSGFOG00000001979)	CEP43 (ENSGFOG00000001972)	RNASET2 (ENSGFOG00000001966)	RPS6KA2 (ENSGFOG00000001944)	MPC1 (ENSGFOG00000001931)	SFT2D1 (ENSGFOG00000001923)	TBXT (ENSGFOG00000001906)	PDE10A (ENSGFOG00000001765)	QKI (ENSGFOG00000001715)	PACRG (ENSGFOG00000001701)	PRKN (ENSGFOG00000001685)	AGPAT4 (ENSGFOG00000001673) ##22	MAP3K4 (ENSGFOG00000001636)	ENSGFOG00000001616	ENSGFOG00000001595	GTPBP2 (ENSGFOG00000001562)	POLH (ENSGFOG00000001545)	XPO5 (ENSGFOG00000001501)	POLR1C (ENSGFOG00000001471)	YIPF3 (ENSGFOG00000001426)	LRRC73 (ENSGFOG00000001411)	ENSGFOG00000001396	DLK2 (ENSGFOG00000001388)	ENSGFOG00000001376	ZNF318 (ENSGFOG00000001362)	FAM98A (ENSGFOG00000001348)	RASGRP3 (ENSGFOG00000001339)
Galloanserae	ANCESTRAL SPECIES	2	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956.j	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208.u.b.a.a.a	ENSGT00940000155208.u.a	ENSGT00940000160810	ENSGT00940000155089.g	ENSGT00940000155089.h	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B
Anatidae	ANCESTRAL SPECIES		ENSGT00530000063927.a.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956.j	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00960000192593	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208.u.b.a.a.b	ENSGT00940000155208.u.b.b	ENSGT00940000160810	ENSGT00940000155089.g	ENSGT00940000155089.h	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B
Pink-footed goose	MODERN SPECIES	104		CCR6 (ENSABRG00000009287)	CEP43 (ENSABRG00000009268)	RNASET2 (ENSABRG00000009247)	RPS6KA2 (ENSABRG00000009159)	MPC1 (ENSABRG00000009105)	SFT2D1 (ENSABRG00000009073)	PRR18 (ENSABRG00000009063)	TBXT (ENSABRG00000009042)	PDE10A (ENSABRG00000008928)	C6orf118 (ENSABRG00000008906)	ENSABRG00000008844	QKI (ENSABRG00000008649)	PACRG (ENSABRG00000008637)	PRKN (ENSABRG00000008607)	AGPAT4 (ENSABRG00000008585) ##22	MAP3K4 (ENSABRG00000008512)	ENSABRG00000008494	ENSABRG00000008490
Duck	MODERN SPECIES	21	TTLL2 (ENSAPLG00000001705)	CCR6 (ENSAPLG00000010486)	CEP43 (ENSAPLG00000010607)	RNASET2 (ENSAPLG00000010821)	RPS6KA2 (ENSAPLG00000011253)	MPC1 (ENSAPLG00000017567)	SFT2D1 (ENSAPLG00000012881)	TBXT (ENSAPLG00000018385)	PDE10A (ENSAPLG00000009479)	C6orf118 (ENSAPLG00000010023)	ENSAPLG00000026502	ENSAPLG00000028615	QKI (ENSAPLG00000010080)	PACRG (ENSAPLG00000010267)	PRKN (ENSAPLG00000012643)	AGPAT4 (ENSAPLG00000012386) ##22	MAP3K4 (ENSAPLG00000011460)	ENSAPLG00000025814	ENSAPLG00000010099	SLC22A3 (ENSAPLG00000009972)	ENSAPLG00000008773	ENSAPLG00000007770	IGF2R (ENSAPLG00000007173)	MAS1 (ENSAPLG00000000729)	PNLDC1 (ENSAPLG00000007014)	MRPL18 (ENSAPLG00000006870)	TCP1 (ENSAPLG00000006259)	ACAT2 (ENSAPLG00000006048)	WTAP (ENSAPLG00000024378)	SOD2 (ENSAPLG00000005614)	ENSAPLG00000005370
Phasianidae	ANCESTRAL SPECIES	3	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956.j	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208.u.b.a.a.a	ENSGT00940000155208.u.a	ENSGT00940000160810	ENSGT00940000155089.g	ENSGT00940000155089.h	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B
Phasianidae_b	ANCESTRAL SPECIES	2	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956.j	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208.u.b.b	ENSGT00940000155208.u.b.a.a.a	ENSGT00940000155208.u.a	ENSGT00940000160810	ENSGT00940000155089.g	ENSGT00940000155089.h	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877
Turkey	MODERN SPECIES	11	ENSMGAG00000012812	ENSMGAG00000012817	ENSMGAG00000017645	CCR6 (ENSMGAG00000015842)	CEP43 (ENSMGAG00000012298)	RNASET2 (ENSMGAG00000012305)	RPS6KA2 (ENSMGAG00000012309)	MPC1 (ENSMGAG00000012326)	SFT2D1 (ENSMGAG00000021326)	TBXT (ENSMGAG00000012328)	ENSMGAG00000022277	ENSMGAG00000021210	ENSMGAG00000022941	ENSMGAG00000018125	ENSMGAG00000016769	AGPAT4 (ENSMGAG00000012346) ##22	MAP3K4 (ENSMGAG00000012360)	ENSMGAG00000022747	ENSMGAG00000012373	SLC22A3 (ENSMGAG00000012396)	ENSMGAG00000012409	ENSMGAG00000012426	IGF2R (ENSMGAG00000012441)	MAS1 (ENSMGAG00000015847)	PNLDC1 (ENSMGAG00000012470)	MRPL18 (ENSMGAG00000012480)	TCP1 (ENSMGAG00000012484)	ACAT2 (ENSMGAG00000012491)	ENSMGAG00000012496	SOD2 (ENSMGAG00000012503)	ENSMGAG00000012510
Chicken	MODERN SPECIES	22	AFDN (ENSGALG00010004951)	TTLL2 (ENSGALG00010004846)	ENSGALG00010004876	CCR6 (ENSGALG00010006499)	FGFR1OP (ENSGALG00010006486)	RNASET2 (ENSGALG00010005789)	RPS6KA2 (ENSGALG00010005839)	MPC1L (ENSGALG00010005861)	SFT2D1 (ENSGALG00010005893)	PRR18 (ENSGALG00010005903)	TBXT (ENSGALG00010005911)	PDE10A (ENSGALG00010005999)	QKI (ENSGALG00010006041)	PACRG (ENSGALG00010006068)	PRKN (ENSGALG00010006183)	AGPAT4 (ENSGALG00010006227) ##22	MAP3K4 (ENSGALG00010006260)	ENSGALG00010006269	PLG (ENSGALG00010007226)	SLC22A3 (ENSGALG00010006293)	ENSGALG00010006318	ENSGALG00010006339	IGF2R (ENSGALG00010006351)	MAS1 (ENSGALG00010006448)	PNLDC1 (ENSGALG00010004390)	MRPL18 (ENSGALG00010004424)	TCP1 (ENSGALG00010004434)	ACAT2 (ENSGALG00010004446)	WTAP (ENSGALG00010004494)	SOD2 (ENSGALG00010006454)	FNDC1 (ENSGALG00010004980)
Japanese quail	MODERN SPECIES	21	TTLL2 (ENSCJPG00005004004)	ENSCJPG00005004005	CCR6 (ENSCJPG00005004006)	CEP43 (ENSCJPG00005004007)	RNASET2 (ENSCJPG00005004012)	ENSCJPG00005004017	RPS6KA2 (ENSCJPG00005004020)	MPC1 (ENSCJPG00005004032)	SFT2D1 (ENSCJPG00005004038)	ENSCJPG00005004044	TBXT (ENSCJPG00005004058)	PDE10A (ENSCJPG00005004075)	ENSCJPG00005004387	PACRG (ENSCJPG00005004398)	PRKN (ENSCJPG00005004407)	AGPAT4 (ENSCJPG00005004426) ##22	MAP3K4 (ENSCJPG00005004431)	ENSCJPG00005004435	ENSCJPG00005004448	SLC22A3 (ENSCJPG00005004486)	ENSCJPG00005004522	ENSCJPG00005004536	IGF2R (ENSCJPG00005004540)	MAS1 (ENSCJPG00005005311)	PNLDC1 (ENSCJPG00005005315)	MRPL18 (ENSCJPG00005005329)	TCP1 (ENSCJPG00005005332)	ACAT2 (ENSCJPG00005005340)	WTAP (ENSCJPG00005005347)	FNDC1 (ENSCJPG00005005370)	ENSCJPG00005005438
African ostrich	MODERN SPECIES	1068													PACRG (ENSSCUG00000018499)	ENSSCUG00000018492	PRKN (ENSSCUG00000018482)	AGPAT4 (ENSSCUG00000018471) ##22	ENSSCUG00000018465	MAP3K4 (ENSSCUG00000018427)	ENSSCUG00000018376	ENSSCUG00000018375	ENSSCUG00000018374	SLC22A3 (ENSSCUG00000018373)	ENSSCUG00000018372	ENSSCUG00000018370	IGF2R (ENSSCUG00000018182)	MAS1 (ENSSCUG00000018141)	ENSSCUG00000018139	PNLDC1 (ENSSCUG00000018136)	MRPL18 (ENSSCUG00000018135)	TCP1 (ENSSCUG00000018131)	ACAT2 (ENSSCUG00000018126)
Australian saltwater crocodile	MODERN SPECIES	60	ENSCPRG00005017482	CCR6 (ENSCPRG00005017488)	CEP43 (ENSCPRG00005017492)	RNASET2 (ENSCPRG00005017504)	RPS6KA2 (ENSCPRG00005017518)	MPC1 (ENSCPRG00005017538)	SFT2D1 (ENSCPRG00005017544)	TBXT (ENSCPRG00005017551)	PDE10A (ENSCPRG00005017562)	C6orf118 (ENSCPRG00005017566)	QKI (ENSCPRG00005017579)	PACRG (ENSCPRG00005017592)	ENSCPRG00005017599	ENSCPRG00005017605	ENSCPRG00005017613	AGPAT4 (ENSCPRG00005017619) ##22	ENSCPRG00005017627	MAP3K4 (ENSCPRG00005017632)	ENSCPRG00005017655	ENSCPRG00005017657	ENSCPRG00005017662	ENSCPRG00005017664	SLC22A3 (ENSCPRG00005017674)	ENSCPRG00005017702	ENSCPRG00005017706	IGF2R (ENSCPRG00005017718)	MAS1 (ENSCPRG00005017726)	PNLDC1 (ENSCPRG00005017732)	MRPL18 (ENSCPRG00005017753)	TCP1 (ENSCPRG00005017758)	ACAT2 (ENSCPRG00005017764)
Cryptodira	ANCESTRAL SPECIES	1	ENSGT00990000203619.A.b.b.a	ENSGT00940000168209	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956.j	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089.g	ENSGT00940000155089.h	ENSGT00390000013943	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000157993
Testudinoidea	ANCESTRAL SPECIES		ENSGT00940000168209	ENSGT01030000234667.b.b	ENSGT00390000007441	ENSGT01030000234667.b.a	ENSGT00640000091563.a	ENSGT00940000159956.j	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208.s	ENSGT00940000160810	ENSGT00940000155089.g	ENSGT00940000155089.h	ENSGT00390000013943	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000157993
Emydidae	ANCESTRAL SPECIES		ENSGT00940000168209	ENSGT01030000234667.b.b	ENSGT00390000007441	ENSGT01030000234667.b.a	ENSGT00640000091563.a	ENSGT00940000159956.j	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208.s	ENSGT00940000160810	ENSGT00940000155089.g	ENSGT00940000155089.h	ENSGT00390000013943	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000157993	ENSGT00390000004172
painted turtle	MODERN SPECIES	2409	ENSCPBG00000028200	ANKRD40 (ENSCPBG00000028201)	LUC7L3 (ENSCPBG00000028202)	ENSCPBG00000028203	WFIKKN2 (ENSCPBG00000028204)	TOB1 (ENSCPBG00000028205)	SPAG9 (ENSCPBG00000000241)	NME1 (ENSCPBG00000000359)	NME2 (ENSCPBG00000000369)	MBTD1 (ENSCPBG00000000400)	UTP18 (ENSCPBG00000000512)	CA10 (ENSCPBG00000000583)	ENSCPBG00000000618	ENSCPBG00000000631	ENSCPBG00000000680	AGPAT4 (ENSCPBG00000000721) ##22	MAP3K4 (ENSCPBG00000000806)	ENSCPBG00000001033	SLC22A3 (ENSCPBG00000001892)	ENSCPBG00000001916	ENSCPBG00000001937	IGF2R (ENSCPBG00000002366)	PNLDC1 (ENSCPBG00000004050)	MRPL18 (ENSCPBG00000004059)	TCP1 (ENSCPBG00000004064)	ACAT2 (ENSCPBG00000004088)
Three-toed box turtle	MODERN SPECIES	31	ENSTMTG00000021910	RNASET2 (ENSTMTG00000021913)	RPS6KA2 (ENSTMTG00000021924)	MPC1 (ENSTMTG00000021974)	SFT2D1 (ENSTMTG00000021980)	PRR18 (ENSTMTG00000021992)	TBXT (ENSTMTG00000021998)	PDE10A (ENSTMTG00000000202)	C6orf118 (ENSTMTG00000000353)	QKI (ENSTMTG00000000384)	PACRG (ENSTMTG00000000409)	ENSTMTG00000000424	ENSTMTG00000000439	ENSTMTG00000000447	ENSTMTG00000000469	AGPAT4 (ENSTMTG00000000495) ##22	MAP3K4 (ENSTMTG00000000543)	ENSTMTG00000000636	SLC22A3 (ENSTMTG00000000668)	ENSTMTG00000000691	ENSTMTG00000000699	IGF2R (ENSTMTG00000000723)	PNLDC1 (ENSTMTG00000000753)	MRPL18 (ENSTMTG00000000765)	TCP1 (ENSTMTG00000000776)	ACAT2 (ENSTMTG00000000811)	WTAP (ENSTMTG00000000840)	SOD2 (ENSTMTG00000000856)	FNDC1 (ENSTMTG00000000878)	TAGAP (ENSTMTG00000000916)	RSPH3 (ENSTMTG00000000966)
Testudinidae	ANCESTRAL SPECIES	4	ENSGT00940000154798.b	ENSGT00940000153295.a	ENSGT00390000007879	ENSGT00950000182802.B	ENSGT00940000159314	ENSGT00940000155194	ENSGT00390000013174	ENSGT00940000156585	ENSGT01090000260040.b.b.b.a	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208.s	ENSGT00940000160810	ENSGT00940000155089.g	ENSGT00940000155089.h	ENSGT00390000013943	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000157993
Goode s thornscrub tortoise	MODERN SPECIES	17	ENSGEVG00005010882	CEP43 (ENSGEVG00005010775)	ENSGEVG00005010659	RNASET2 (ENSGEVG00005010632)	RPS6KA2 (ENSGEVG00005010253)	MPC1 (ENSGEVG00005010196)	SFT2D1 (ENSGEVG00005010173)	PRR18 (ENSGEVG00005010158)	TBXT (ENSGEVG00005009997)	PDE10A (ENSGEVG00005009372)	C6orf118 (ENSGEVG00005009120)	QKI (ENSGEVG00005009095)	PACRG (ENSGEVG00005009052)	PRKN (ENSGEVG00005009001)	ENSGEVG00005020970	AGPAT4 (ENSGEVG00005020966) ##22	ENSGEVG00005020964	MAP3K4 (ENSGEVG00005020957)	ENSGEVG00005020936	ENSGEVG00005020932	ENSGEVG00005020929	ENSGEVG00005020924	ENSGEVG00005020912	IGF2R (ENSGEVG00005020730)	PNLDC1 (ENSGEVG00005020642)	MRPL18 (ENSGEVG00005020637)	TCP1 (ENSGEVG00005020630)	ACAT2 (ENSGEVG00005020622)	WTAP (ENSGEVG00005020617)	SOD2 (ENSGEVG00005020614)	FNDC1 (ENSGEVG00005020604)
Abingdon island giant tortoise	MODERN SPECIES	1729													ENSCABG00000021259	ENSCABG00000021258	ENSCABG00000021255	AGPAT4 (ENSCABG00000021254) ##22	ENSCABG00000021253	MAP3K4 (ENSCABG00000020869)	ENSCABG00000020831	ENSCABG00000020826	ENSCABG00000020821	ENSCABG00000020816	ENSCABG00000020814	ENSCABG00000020812	ENSCABG00000020807	IGF2R (ENSCABG00000018276)	PNLDC1 (ENSCABG00000018162)	GOLGA4 (ENSCABG00000018060)	ENSCABG00000018043
Chinese turtle	MODERN SPECIES	461													ENSPSIG00000000131	ENSPSIG00000005688	ENSPSIG00000005683	AGPAT4 (ENSPSIG00000005665) ##22	MAP3K4 (ENSPSIG00000017964)	ENSPSIG00000017202	SLC22A3 (ENSPSIG00000016587)	ENSPSIG00000016093	ENSPSIG00000015715	ENSPSIG00000015704	IGF2R (ENSPSIG00000011476)	PNLDC1 (ENSPSIG00000011419)	MRPL18 (ENSPSIG00000010990)	ENSPSIG00000000127	TCP1 (ENSPSIG00000010001)	ACAT2 (ENSPSIG00000008840)	WTAP (ENSPSIG00000008684)	SOD2 (ENSPSIG00000007847)	FNDC1 (ENSPSIG00000007390)
Mammalia	ANCESTRAL SPECIES	2	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00420000030417	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00950000186343	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000162065	ENSGT00940000155089	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B
Platypus	MODERN SPECIES	63																ENSOANG00000043872 ##22	ENSOANG00000046899
Theria	ANCESTRAL SPECIES	4	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00420000030417	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00950000186343	ENSGT00940000168329	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b	ENSGT00390000011877	ENSGT00530000063558.B
Eutheria	ANCESTRAL SPECIES	9	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00420000030417	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00950000186343	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B
Boreoeutheria	ANCESTRAL SPECIES	7	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00950000186343	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B
Euarchontoglires	ANCESTRAL SPECIES	7	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00400000024673	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B
Euarchontoglires_A	ANCESTRAL SPECIES	6	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00400000024673	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B
Tree shrew	MODERN SPECIES	5738													ENSTBEG00000007860	PRKN (ENSTBEG00000007720)	ENSTBEG00000007230	AGPAT4 (ENSTBEG00000007181) ##22	MAP3K4 (ENSTBEG00000006880)
Glires	ANCESTRAL SPECIES	5	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00400000024673	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B
Rodentia	ANCESTRAL SPECIES	6	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00400000024673	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B
Rodentia_A	ANCESTRAL SPECIES	8	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B
Sciuridae	ANCESTRAL SPECIES	1	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B
Marmotini	ANCESTRAL SPECIES	11	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00390000015545.v	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B
Alpin marmot	MODERN SPECIES	55	FRMD1 (ENSMMMG00000008833)	ENSMMMG00000008905	CCR6 (ENSMMMG00000008925)	ENSMMMG00000008953	RNASET2 (ENSMMMG00000008966)	RPS6KA2 (ENSMMMG00000008982)	MPC1 (ENSMMMG00000009012)	ENSMMMG00000009041	TBXT (ENSMMMG00000009058)	PDE10A (ENSMMMG00000009083)	ENSMMMG00000009166	QKI (ENSMMMG00000009192)	PACRG (ENSMMMG00000009213)	PRKN (ENSMMMG00000009240)	ENSMMMG00000009285	AGPAT4 (ENSMMMG00000009306) ##22	MAP3K4 (ENSMMMG00000009318)	ENSMMMG00000009428	SLC22A3 (ENSMMMG00000009457)	SLC22A2 (ENSMMMG00000009474)	SLC22A1 (ENSMMMG00000009498)	IGF2R (ENSMMMG00000009520)	MAS1 (ENSMMMG00000009593)	ENSMMMG00000009610	PNLDC1 (ENSMMMG00000009617)	MRPL18 (ENSMMMG00000009635)	TCP1 (ENSMMMG00000009649)	ACAT2 (ENSMMMG00000009712)	WTAP (ENSMMMG00000009724)	SOD2 (ENSMMMG00000009744)	ENSMMMG00000009777
Marmotini_b	ANCESTRAL SPECIES	56	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00390000015545.v	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B
Squirrel	MODERN SPECIES	89	ENSSTOG00000025800	GPR31 (ENSSTOG00000002401)	CCR6 (ENSSTOG00000022381)	CEP43 (ENSSTOG00000028679)	RNASET2 (ENSSTOG00000010853)	RPS6KA2 (ENSSTOG00000005318)	MPC1 (ENSSTOG00000024720)	SFT2D1 (ENSSTOG00000031211)	TBXT (ENSSTOG00000028238)	PDE10A (ENSSTOG00000001947)	C6orf118 (ENSSTOG00000020468)	QKI (ENSSTOG00000009113)	PACRG (ENSSTOG00000010375)	ENSSTOG00000034364	PRKN (ENSSTOG00000021965)	AGPAT4 (ENSSTOG00000002544) ##22	MAP3K4 (ENSSTOG00000002821)	ENSSTOG00000020315	SLC22A3 (ENSSTOG00000007036)	SLC22A2 (ENSSTOG00000010147)	SLC22A1 (ENSSTOG00000009024)	IGF2R (ENSSTOG00000008960)	MAS1 (ENSSTOG00000029761)	ENSSTOG00000026373	PNLDC1 (ENSSTOG00000005595)	MRPL18 (ENSSTOG00000005583)	ENSSTOG00000005572	ACAT2 (ENSSTOG00000005564)	WTAP (ENSSTOG00000026157)	SOD2 (ENSSTOG00000008738)	ENSSTOG00000033536
Arctic ground squirrel	MODERN SPECIES	116							SFT2D1 (ENSUPAG00010012170)	PRR18 (ENSUPAG00010012167)	TBXT (ENSUPAG00010012160)	PDE10A (ENSUPAG00010011970)	ENSUPAG00010011964	QKI (ENSUPAG00010011918)	PACRG (ENSUPAG00010011904)	ENSUPAG00010011891	PRKN (ENSUPAG00010011852)	AGPAT4 (ENSUPAG00010011837) ##22	ENSUPAG00010011827	MAP3K4 (ENSUPAG00010011747)	ENSUPAG00010011719	SLC22A3 (ENSUPAG00010011704)	SLC22A2 (ENSUPAG00010011687)	SLC22A1 (ENSUPAG00010011671)	IGF2R (ENSUPAG00010011620)
Eurasian red squirrel	MODERN SPECIES	16	RNASET2 (ENSSVLG00005009530)	RPS6KA2 (ENSSVLG00005009658)	ENSSVLG00005009894	ENSSVLG00005009919	ENSSVLG00005009943	MPC1 (ENSSVLG00005009984)	SFT2D1 (ENSSVLG00005010090)	PRR18 (ENSSVLG00005010120)	TBXT (ENSSVLG00005010149)	ENSSVLG00005010236	PDE10A (ENSSVLG00005010372)	C6orf118 (ENSSVLG00005010851)	QKI (ENSSVLG00005011023)	PACRG (ENSSVLG00005011174)	PRKN (ENSSVLG00005011292)	AGPAT4 (ENSSVLG00005011803) ##22	MAP3K4 (ENSSVLG00005011972)	ENSSVLG00005013042	ENSSVLG00005013165	ENSSVLG00005013240	SLC22A3 (ENSSVLG00005013302)	SLC22A2 (ENSSVLG00005013453)	SLC22A1 (ENSSVLG00005013724)	IGF2R (ENSSVLG00005013999)	ENSSVLG00005014490	MAS1 (ENSSVLG00005014545)	ENSSVLG00005014568	MRPL18 (ENSSVLG00005014946)	ENSSVLG00005015024	ENSSVLG00005015119	ACAT2 (ENSSVLG00005015487)
Hystricomorpha	ANCESTRAL SPECIES	53	ENSGT00530000063359.A	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT00940000161879	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877
Naked mole-rat female	MODERN SPECIES		ENSHGLG00000040761	ENSHGLG00000041990	TBXT (ENSHGLG00000002638)	PDE10A (ENSHGLG00000003609)	C6orf118 (ENSHGLG00000040311)	ENSHGLG00000002800	ENSHGLG00000033943	ENSHGLG00000020018	QKI (ENSHGLG00000003074)	ENSHGLG00000040590	PACRG (ENSHGLG00000048524)	ENSHGLG00000041594	ENSHGLG00000050950	PRKN (ENSHGLG00000006873)	ENSHGLG00000034284	AGPAT4 (ENSHGLG00000008163) ##22	MAP3K4 (ENSHGLG00000011068)	ENSHGLG00000017452	ENSHGLG00000017477	ENSHGLG00000050994	ENSHGLG00000034005	ENSHGLG00000017482	ENSHGLG00000014427	SLC22A1 (ENSHGLG00000017500)	Igf2r (ENSHGLG00000003728)	ENSHGLG00000039226	MAS1 (ENSHGLG00000019988)	ENSHGLG00000035250	PNLDC1 (ENSHGLG00000006889)	ENSHGLG00000007214	TCP1 (ENSHGLG00000007866)
Hystricomorpha_a	ANCESTRAL SPECIES	30	ENSGT00530000063359.A	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT00940000161879	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877
Guinea pig	MODERN SPECIES	60	ENSCPOG00000009004	GPR31 (ENSCPOG00000001786)	CCR6 (ENSCPOG00000034828)	CEP43 (ENSCPOG00000036620)	RNASET2 (ENSCPOG00000007899)	RPS6KA2 (ENSCPOG00000005210)	MPC1 (ENSCPOG00000005208)	SFT2D1 (ENSCPOG00000031625)	ENSCPOG00000000167	TBXT (ENSCPOG00000001358)	PDE10A (ENSCPOG00000008783)	C6orf118 (ENSCPOG00000008774)	QKI (ENSCPOG00000003424)	PACRG (ENSCPOG00000013410)	PRKN (ENSCPOG00000006136)	AGPAT4 (ENSCPOG00000006135) ##22	MAP3K4 (ENSCPOG00000013392)	ENSCPOG00000011605	SLC22A3 (ENSCPOG00000010127)	SLC22A2 (ENSCPOG00000001527)	IGF2R (ENSCPOG00000013207)	MAS1 (ENSCPOG00000000027)	PNLDC1 (ENSCPOG00000019565)	MRPL18 (ENSCPOG00000040103)	TCP1 (ENSCPOG00000001676)	ACAT2 (ENSCPOG00000001672)	WTAP (ENSCPOG00000001669)	SOD2 (ENSCPOG00000036439)	ENSCPOG00000040324
Hystricomorpha_b	ANCESTRAL SPECIES	29	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00530000063927.a.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT00940000161879	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877
Long-tailed chinchilla	MODERN SPECIES	146	AFDN (ENSCLAG00000003013)	UNC93A (ENSCLAG00000004396)	ENSCLAG00000004820	CCR6 (ENSCLAG00000005134)	CEP43 (ENSCLAG00000005200)	RNASET2 (ENSCLAG00000005811)	RPS6KA2 (ENSCLAG00000002285)	MPC1 (ENSCLAG00000002442)	SFT2D1 (ENSCLAG00000002586)	TBXT (ENSCLAG00000002632)	PDE10A (ENSCLAG00000004872)	C6orf118 (ENSCLAG00000006108)	ENSCLAG00000006238	PACRG (ENSCLAG00000008105)	PRKN (ENSCLAG00000008284)	AGPAT4 (ENSCLAG00000008421) ##22	MAP3K4 (ENSCLAG00000008769)	ENSCLAG00000002399	SLC22A3 (ENSCLAG00000002492)	SLC22A2 (ENSCLAG00000002562)	SLC22A1 (ENSCLAG00000002646)	IGF2R (ENSCLAG00000002642)	MAS1 (ENSCLAG00000017515)	PNLDC1 (ENSCLAG00000003228)	MRPL18 (ENSCLAG00000012045)	ENSCLAG00000012133	ENSCLAG00000009354	ACAT2 (ENSCLAG00000009441)	WTAP (ENSCLAG00000009722)	SOD2 (ENSCLAG00000010198)
Degu	MODERN SPECIES	153											ENSODEG00000019798	ENSODEG00000019307	QKI (ENSODEG00000007408)	PACRG (ENSODEG00000009517)	PRKN (ENSODEG00000006701)	AGPAT4 (ENSODEG00000007571) ##22	ENSODEG00000006672	ENSODEG00000006392	ENSODEG00000019262	ENSODEG00000006455	ENSODEG00000009894	SLC22A3 (ENSODEG00000006460)	ENSODEG00000006583	ENSODEG00000007010	SLC22A2 (ENSODEG00000007315)	SLC22A1 (ENSODEG00000007862)	ENSODEG00000019312	IGF2R (ENSODEG00000007106)	ENSODEG00000019599	MAS1 (ENSODEG00000019418)	ENSODEG00000019381
Rodentia_B	ANCESTRAL SPECIES	18	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00400000024673	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B
Myomorpha	ANCESTRAL SPECIES	21	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00400000024673	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B
Muroidea	ANCESTRAL SPECIES	22	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00400000024673	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B
Muroidea_A	ANCESTRAL SPECIES	11	ENSGT00400000024673	ENSGT00640000091563.a	ENSGT00390000007441	ENSGT01030000234667.b	ENSGT00510000046988.r	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00690000103860	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000153773.a.a.b.e.b	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B
Cricetidae	ANCESTRAL SPECIES	11	ENSGT00400000024673	ENSGT00640000091563.a	ENSGT00390000007441	ENSGT01030000234667.b	ENSGT00510000046988.r	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00690000103860	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000153773.a.a.b.e.b	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT01030000234985	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B
Cricetinae	ANCESTRAL SPECIES	7	ENSGT00940000159956	ENSGT00400000024673	ENSGT00640000091563.a	ENSGT00390000007441	ENSGT01030000234667.b	ENSGT00510000046988.r	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000153773.a.a.b.e.b	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT01030000234985	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B
Chinese hamster chok1gshd	MODERN SPECIES	1	ENSCGRG00001000721	Gpr31b (ENSCGRG00001006182)	ENSCGRG00001024787	Rps6ka2 (ENSCGRG00001024721)	ENSCGRG00001024749	ENSCGRG00001024881	ENSCGRG00001024817	ENSCGRG00001024700	Pde10a (ENSCGRG00001016395)	1700010I14Rik (ENSCGRG00001014965)	Pabpc6 (ENSCGRG00001007983)	Qki (ENSCGRG00001012114)	Pacrg (ENSCGRG00001010865)	ENSCGRG00001009195	Prkn (ENSCGRG00001011980)	Agpat4 (ENSCGRG00001024340) ##22	Map3k4 (ENSCGRG00001023770)	Plg (ENSCGRG00001023181)	ENSCGRG00001022809	Slc22a3 (ENSCGRG00001024404)	Slc22a2 (ENSCGRG00001023859)	Slc22a1 (ENSCGRG00001023484)	Igf2r (ENSCGRG00001022921)	Mas1 (ENSCGRG00001007652)	ENSCGRG00001007470	Mrpl18 (ENSCGRG00001010667)	TCP1 (ENSCGRG00001007629)	ENSCGRG00001024850	ENSCGRG00001024790	Wtap (ENSCGRG00001003444)	Sod2 (ENSCGRG00001001155)
Golden Hamster	MODERN SPECIES	830														Pacrg (ENSMAUG00000001701)	ENSMAUG00000002219	Agpat4 (ENSMAUG00000003994) ##22	ENSMAUG00000005277	ENSMAUG00000002757	Plg (ENSMAUG00000003213)	Slc22a3 (ENSMAUG00000004349)
Cricetidae_B	ANCESTRAL SPECIES	21	ENSGT00990000203619.A.b.b.a	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT01030000234667.b	ENSGT00510000046988.r	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00690000103860	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000153773.a.a.b.e.b	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B
Prairie vole	MODERN SPECIES	358	ENSMOCG00000016335	ENSMOCG00000019493	Rps6ka2 (ENSMOCG00000011166)	ENSMOCG00000016647	ENSMOCG00000014231	Ccr6 (ENSMOCG00000022621)	ENSMOCG00000003155	ENSMOCG00000012383	Prr18 (ENSMOCG00000014100)	T (ENSMOCG00000016940)	Pde10a (ENSMOCG00000016596)	1700010I14Rik (ENSMOCG00000011216)	Qki (ENSMOCG00000008370)	Pacrg (ENSMOCG00000018703)	Prkn (ENSMOCG00000000910)	Agpat4 (ENSMOCG00000002544) ##22	Map3k4 (ENSMOCG00000015705)	ENSMOCG00000016399	Plg (ENSMOCG00000021058)	Slc22a3 (ENSMOCG00000009699)	Slc22a2 (ENSMOCG00000000432)	Slc22a1 (ENSMOCG00000006138)	Igf2r (ENSMOCG00000016653)	Mas1 (ENSMOCG00000012154)	Pnldc1 (ENSMOCG00000014287)	Mrpl18 (ENSMOCG00000016680)	Tcp1 (ENSMOCG00000020265)	ENSMOCG00000000514	ENSMOCG00000016415	Wtap (ENSMOCG00000015976)	Sod2 (ENSMOCG00000021263)
Northern American deer mouse	MODERN SPECIES	7	Rps6ka2 (ENSPEMG00000008858)	ENSPEMG00000011035	ENSPEMG00000018400	ENSPEMG00000017376	Prr18 (ENSPEMG00000014412)	ENSPEMG00000027563	T (ENSPEMG00000015655)	Pde10a (ENSPEMG00000013375)	1700010I14Rik (ENSPEMG00000009028)	Pabpc6 (ENSPEMG00000028235)	Qki (ENSPEMG00000007765)	Pacrg (ENSPEMG00000008420)	ENSPEMG00000025332	ENSPEMG00000028613	Prkn (ENSPEMG00000013734)	Agpat4 (ENSPEMG00000000276) ##22	ENSPEMG00000007201	Map3k4 (ENSPEMG00000011456)	Plg (ENSPEMG00000006099)	Slc22a3 (ENSPEMG00000001370)	Slc22a2 (ENSPEMG00000009409)	Slc22a1 (ENSPEMG00000013645)	Igf2r (ENSPEMG00000016189)	Mas1 (ENSPEMG00000014302)	Pnldc1 (ENSPEMG00000016301)	Mrpl18 (ENSPEMG00000016836)	Tcp1 (ENSPEMG00000012176)	ENSPEMG00000002107	ENSPEMG00000017398	Wtap (ENSPEMG00000013632)	Sod2 (ENSPEMG00000013472)
Murinae	ANCESTRAL SPECIES	29	ENSGT00400000024673	ENSGT00640000091563.a	ENSGT00390000007441	ENSGT01030000234667.b	ENSGT00510000046988.q.b	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00690000103860	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000153773.a.a.b.e.b	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000013931.a.a	ENSGT00390000011877
Mus	ANCESTRAL SPECIES	21	ENSGT00400000024673	ENSGT00640000091563.a	ENSGT00390000007441	ENSGT01030000234667.b	ENSGT00510000046988.q.b	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00690000103860	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000153773.a.a.b.e.b	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.a	ENSGT00530000063558.B	ENSGT00940000157993
Mus_A	ANCESTRAL SPECIES	10	ENSGT00400000024673	ENSGT00640000091563.a	ENSGT00390000007441	ENSGT01030000234667.b	ENSGT00510000046988.q.b	ENSGT00390000018525.a.a.j	ENSGT00390000002164	ENSGT00690000103860	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000153773.a.a.b.e.b	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.a	ENSGT00530000063558.B	ENSGT00940000157993
Mus_B	ANCESTRAL SPECIES	9	ENSGT00390000007441	ENSGT01030000234667.b	ENSGT00510000046988.q.b.b.a	ENSGT00390000018525.a.a.j	ENSGT00390000002164	ENSGT00690000103860	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000154721.db.a	ENSGT00700000105447.b.a	ENSGT00940000153773.a.a.b.e.b	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065.d	ENSGT00940000162065.c.a	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B.p	ENSGT01030000234626.B.o	ENSGT00390000013931.a.b.b
Mouse	MODERN SPECIES	8	Rnaset2a (ENSMUSG00000095687)	Cep43 (ENSMUSG00000069135)	Ccr6 (ENSMUSG00000040899)	Mpc1 (ENSMUSG00000023861)	Sft2d1 (ENSMUSG00000073468)	Prr18 (ENSMUSG00000055945)	T2 (ENSMUSG00000058159)	T (ENSMUSG00000062327)	Pde10a (ENSMUSG00000023868)	1700010I14Rik (ENSMUSG00000023873)	Gm17728 (ENSMUSG00000072968)	Pabpc6 (ENSMUSG00000046173)	Qki (ENSMUSG00000062078)	Pacrg (ENSMUSG00000037196)	Prkn (ENSMUSG00000023826)	Agpat4 (ENSMUSG00000023827) ##22	Map3k4 (ENSMUSG00000014426)	Plg (ENSMUSG00000059481)	Slc22a3 (ENSMUSG00000023828)	Slc22a2 (ENSMUSG00000040966)	Slc22a1 (ENSMUSG00000023829)	Igf2r (ENSMUSG00000023830)	Mas1 (ENSMUSG00000068037)	Mrgprh (ENSMUSG00000059408)	Pnldc1 (ENSMUSG00000073460)	Mrpl18 (ENSMUSG00000057388)	Tcp1 (ENSMUSG00000068039)	Acat3 (ENSMUSG00000062480)	Acat2 (ENSMUSG00000023832)	Wtap (ENSMUSG00000060475)	Sod2 (ENSMUSG00000006818)
Mus_C	ANCESTRAL SPECIES	35								ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000154721.db.a	ENSGT00700000105447.b.a	ENSGT00940000153773.a.a.b.e.b	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065.d	ENSGT00940000162065.c.a	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B.p	ENSGT01030000234626.B.o	ENSGT00390000013931.a.a
Steppe mouse	MODERN SPECIES	2567														ENSMSIG00000014440	ENSMSIG00000014425	Agpat4 (ENSMSIG00000014411) ##22	ENSMSIG00000014386	Map3k4 (ENSMSIG00000014264)
spretus	MODERN SPECIES	8	MGP_SPRETEiJ_G0021951	Cep43 (MGP_SPRETEiJ_G0021952)	Ccr6 (MGP_SPRETEiJ_G0021953)	MGP_SPRETEiJ_G0021954	Sft2d1 (MGP_SPRETEiJ_G0021955)	MGP_SPRETEiJ_G0021956	Prr18 (MGP_SPRETEiJ_G0021957)	T (MGP_SPRETEiJ_G0021958)	MGP_SPRETEiJ_G0021959	MGP_SPRETEiJ_G0021960	Gm17728 (MGP_SPRETEiJ_G0021961)	Pabpc6 (MGP_SPRETEiJ_G0021962)	Qki (MGP_SPRETEiJ_G0021963)	Pacrg (MGP_SPRETEiJ_G0021964)	Prkn (MGP_SPRETEiJ_G0021965)	Agpat4 (MGP_SPRETEiJ_G0021966) ##22	Map3k4 (MGP_SPRETEiJ_G0021967)	Plg (MGP_SPRETEiJ_G0021968)	Slc22a3 (MGP_SPRETEiJ_G0021969)	Slc22a2 (MGP_SPRETEiJ_G0021970)	Slc22a1 (MGP_SPRETEiJ_G0021971)	Igf2r (MGP_SPRETEiJ_G0021972)	Mas1 (MGP_SPRETEiJ_G0021973)	Mrgprh (MGP_SPRETEiJ_G0021974)	Pnldc1 (MGP_SPRETEiJ_G0021975)	Mrpl18 (MGP_SPRETEiJ_G0021976)	Tcp1 (MGP_SPRETEiJ_G0021977)	Acat3 (MGP_SPRETEiJ_G0021978)	MGP_SPRETEiJ_G0021979	MGP_SPRETEiJ_G0021980	Sod2 (MGP_SPRETEiJ_G0021981)
Ryukyu mouse	MODERN SPECIES	8	MGP_CAROLIEiJ_G0021069	MGP_CAROLIEiJ_G0021068	Cep43 (MGP_CAROLIEiJ_G0021067)	Ccr6 (MGP_CAROLIEiJ_G0021066)	MGP_CAROLIEiJ_G0021065	MGP_CAROLIEiJ_G0021064	Prr18 (MGP_CAROLIEiJ_G0021063)	Sft2d1 (MGP_CAROLIEiJ_G0021062)	T (MGP_CAROLIEiJ_G0021061)	Pde10a (MGP_CAROLIEiJ_G0021060)	1700010I14Rik (MGP_CAROLIEiJ_G0021059)	Pabpc6 (MGP_CAROLIEiJ_G0021058)	Qki (MGP_CAROLIEiJ_G0021057)	Pacrg (MGP_CAROLIEiJ_G0021056)	Prkn (MGP_CAROLIEiJ_G0021055)	Agpat4 (MGP_CAROLIEiJ_G0021054) ##22	Map3k4 (MGP_CAROLIEiJ_G0021053)	Plg (MGP_CAROLIEiJ_G0021052)	Slc22a3 (MGP_CAROLIEiJ_G0021051)	Slc22a2 (MGP_CAROLIEiJ_G0021050)	Slc22a1 (MGP_CAROLIEiJ_G0021049)	MGP_CAROLIEiJ_G0021048	Mas1 (MGP_CAROLIEiJ_G0021047)	Mrgprh (MGP_CAROLIEiJ_G0021046)	Pnldc1 (MGP_CAROLIEiJ_G0021045)	Mrpl18 (MGP_CAROLIEiJ_G0021044)	Tcp1 (MGP_CAROLIEiJ_G0021043)	MGP_CAROLIEiJ_G0021042	MGP_CAROLIEiJ_G0021041	MGP_CAROLIEiJ_G0021040	Sod2 (MGP_CAROLIEiJ_G0021039)
Shrew mouse	MODERN SPECIES	13	MGP_PahariEiJ_G0023385	Cep43 (MGP_PahariEiJ_G0023384)	Ccr6 (MGP_PahariEiJ_G0023383)	MGP_PahariEiJ_G0023382	MGP_PahariEiJ_G0023381	Prr18 (MGP_PahariEiJ_G0023380)	MGP_PahariEiJ_G0023379	T (MGP_PahariEiJ_G0023378)	MGP_PahariEiJ_G0023377	Pde10a (MGP_PahariEiJ_G0023376)	MGP_PahariEiJ_G0023375	MGP_PahariEiJ_G0023374	Qki (MGP_PahariEiJ_G0023373)	Pacrg (MGP_PahariEiJ_G0023372)	Prkn (MGP_PahariEiJ_G0023371)	Agpat4 (MGP_PahariEiJ_G0023370) ##22	Map3k4 (MGP_PahariEiJ_G0023369)	Plg (MGP_PahariEiJ_G0023368)	Slc22a3 (MGP_PahariEiJ_G0023367)	Slc22a2 (MGP_PahariEiJ_G0023366)	Slc22a1 (MGP_PahariEiJ_G0023365)	Igf2r (MGP_PahariEiJ_G0023364)	Mas1 (MGP_PahariEiJ_G0023363)	Mrgprh (MGP_PahariEiJ_G0023362)	Pnldc1 (MGP_PahariEiJ_G0023361)	Mrpl18 (MGP_PahariEiJ_G0023360)	Tcp1 (MGP_PahariEiJ_G0023359)	MGP_PahariEiJ_G0023358	MGP_PahariEiJ_G0023357	MGP_PahariEiJ_G0023356	Sod2 (MGP_PahariEiJ_G0023355)
Rat	MODERN SPECIES		Rnaset2 (ENSRNOG00000013190)	Cep43 (ENSRNOG00000055093)	Ccr6 (ENSRNOG00000012964)	Mpc1 (ENSRNOG00000012415)	Sft2d1 (ENSRNOG00000024140)	Prr18 (ENSRNOG00000070586)	ENSRNOG00000066810	T2 (ENSRNOG00000024172)	Tbxt (ENSRNOG00000012229)	Pde10a (ENSRNOG00000011310)	MGC94891 (ENSRNOG00000011243)	Pabpc6 (ENSRNOG00000017367)	Qki (ENSRNOG00000048297)	Pacrg (ENSRNOG00000068261)	Prkn (ENSRNOG00000055547)	Agpat4 (ENSRNOG00000017731) ##22	Map3k4 (ENSRNOG00000017419)	AABR07001512.1 (ENSRNOG00000017412)	Plg (ENSRNOG00000017223)	Slc22a3 (ENSRNOG00000022946)	Slc22a2 (ENSRNOG00000016625)	Slc22a1 (ENSRNOG00000016337)	Igf2r (ENSRNOG00000014997)	Mas1 (ENSRNOG00000014971)	Pnldc1 (ENSRNOG00000023140)	Mrpl18 (ENSRNOG00000014582)	Tcp1 (ENSRNOG00000014160)	ENSRNOG00000069754	Acat2l1 (ENSRNOG00000013975)	Acat2 (ENSRNOG00000019189)	Wtap (ENSRNOG00000019091)
Upper Galilee mountains blind mole rat	MODERN SPECIES	431															Prkn (ENSNGAG00000016401)	Agpat4 (ENSNGAG00000013433) ##22	ENSNGAG00000019626	ENSNGAG00000017848	Plg (ENSNGAG00000004331)	Slc22a3 (ENSNGAG00000016887)	Slc22a2 (ENSNGAG00000013335)
Lesser Egyptian jerboa	MODERN SPECIES	44	Cep43 (ENSJJAG00000024342)	ENSJJAG00000013485	Rps6ka2 (ENSJJAG00000005765)	ENSJJAG00000020707	ENSJJAG00000023581	ENSJJAG00000022568	Pde10a (ENSJJAG00000010428)	ENSJJAG00000005686	ENSJJAG00000010987	ENSJJAG00000017023	Pabpc6 (ENSJJAG00000019230)	Qki (ENSJJAG00000022765)	Pacrg (ENSJJAG00000013819)	ENSJJAG00000022340	Prkn (ENSJJAG00000011282)	Agpat4 (ENSJJAG00000024380) ##22	ENSJJAG00000017984	ENSJJAG00000016960	Plg (ENSJJAG00000023805)	Slc22a3 (ENSJJAG00000015842)	Slc22a2 (ENSJJAG00000020676)	Slc22a1 (ENSJJAG00000017119)	Igf2r (ENSJJAG00000019554)	Mas1 (ENSJJAG00000011567)	Pnldc1 (ENSJJAG00000009937)	ENSJJAG00000019850	ENSJJAG00000022555	Wtap (ENSJJAG00000017886)	Sod2 (ENSJJAG00000018002)	Fndc1 (ENSJJAG00000019101)	ENSJJAG00000002202
Kangaroo rat	MODERN SPECIES	396	Thbs2 (ENSDORG00000005713)	Smoc2 (ENSDORG00000006153)	ENSDORG00000003713	Afdn (ENSDORG00000010887)	ENSDORG00000012694	Ccr6 (ENSDORG00000012594)	Cep43 (ENSDORG00000004815)	ENSDORG00000011636	Rps6ka2 (ENSDORG00000007779)	ENSDORG00000010309	ENSDORG00000012736	Pde10a (ENSDORG00000005783)	Qki (ENSDORG00000008151)	ENSDORG00000026934	ENSDORG00000027142	Agpat4 (ENSDORG00000015627) ##22	ENSDORG00000025664	Plg (ENSDORG00000024248)	Slc22a3 (ENSDORG00000008402)	Slc22a2 (ENSDORG00000008400)	Slc22a1 (ENSDORG00000011523)	Igf2r (ENSDORG00000009527)	Mas1 (ENSDORG00000003320)	Pnldc1 (ENSDORG00000011517)	ENSDORG00000011510	ENSDORG00000011505	ENSDORG00000026059	Sod2 (ENSDORG00000001358)	Ezr (ENSDORG00000015424)	ENSDORG00000014053	ENSDORG00000014045
Lagomorpha	ANCESTRAL SPECIES	64										ENSGT00390000018525.a.a	ENSGT00940000157912	ENSGT00940000156543	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00530000063558.B	ENSGT00940000157993	ENSGT00390000004172
Pika	MODERN SPECIES	4080																AGPAT4 (ENSOPRG00000014367) ##22
Rabbit	MODERN SPECIES	3						TBXT (ENSOCUG00000000660)	PDE10A (ENSOCUG00000009218)	ENSOCUG00000016006	ENSOCUG00000034613	ENSOCUG00000030844	QKI (ENSOCUG00000004117)	PACRG (ENSOCUG00000013289)	ENSOCUG00000031144	ENSOCUG00000025750	ENSOCUG00000035966	ENSOCUG00000033664 ##22	ENSOCUG00000032142	MAP3K4 (ENSOCUG00000017154)	ENSOCUG00000001766	SLC22A3 (ENSOCUG00000004222)	SLC22A2 (ENSOCUG00000002542)	SLC22A1 (ENSOCUG00000002539)	IGF2R (ENSOCUG00000008785)	MGRA (ENSOCUG00000001493)	PNLDC1 (ENSOCUG00000013867)	MRPL18 (ENSOCUG00000013858)	ACAT2 (ENSOCUG00000013836)	TCP1 (ENSOCUG00000013847)	WTAP (ENSOCUG00000035527)	ENSOCUG00000024780	FNDC1 (ENSOCUG00000015039)
Primates	ANCESTRAL SPECIES	5	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00400000024673	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B
Strepsirrhini	ANCESTRAL SPECIES	7	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B
Lemuriformes	ANCESTRAL SPECIES	3	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B
Lemuriformes_a	ANCESTRAL SPECIES	28													ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B
Coquerels sifaka	MODERN SPECIES	358												ENSPCOG00000022276	QKI (ENSPCOG00000007664)	PACRG (ENSPCOG00000013888)	PRKN (ENSPCOG00000019988)	AGPAT4 (ENSPCOG00000013535) ##22	MAP3K4 (ENSPCOG00000015288)	ENSPCOG00000026308	SLC22A3 (ENSPCOG00000017815)	SLC22A2 (ENSPCOG00000023545)	SLC22A1 (ENSPCOG00000021330)	IGF2R (ENSPCOG00000018469)	PNLDC1 (ENSPCOG00000025722)	MRPL18 (ENSPCOG00000025100)	ENSPCOG00000017935	ACAT2 (ENSPCOG00000011643)	WTAP (ENSPCOG00000014167)	SOD2 (ENSPCOG00000014692)	FNDC1 (ENSPCOG00000003224)	ENSPCOG00000019827	RSPH3 (ENSPCOG00000007389)
Greater bamboo lemur	MODERN SPECIES	990															ENSPSMG00000018587	AGPAT4 (ENSPSMG00000018610) ##22	MAP3K4 (ENSPSMG00000018873)	ENSPSMG00000019164	ENSPSMG00000019187	SLC22A3 (ENSPSMG00000019195)	ENSPSMG00000019196	ENSPSMG00000019203	ENSPSMG00000019218	IGF2R (ENSPSMG00000019256)	ENSPSMG00000019267	MAS1 (ENSPSMG00000019268)	PNLDC1 (ENSPSMG00000019276)	MRPL18 (ENSPSMG00000019284)	TCP1 (ENSPSMG00000019332)	ACAT2 (ENSPSMG00000019357)	WTAP (ENSPSMG00000019381)
Mouse lemur	MODERN SPECIES	28	UNC93A (ENSMICG00000004803)	TTLL2 (ENSMICG00000047984)	CCR6 (ENSMICG00000028385)	CEP43 (ENSMICG00000014198)	RNASET2 (ENSMICG00000014184)	RPS6KA2 (ENSMICG00000003856)	MPC1 (ENSMICG00000003851)	SFT2D1 (ENSMICG00000034411)	PRR18 (ENSMICG00000042137)	TBXT (ENSMICG00000016122)	PDE10A (ENSMICG00000008121)	C6orf118 (ENSMICG00000046277)	QKI (ENSMICG00000009220)	PACRG (ENSMICG00000009209)	PRKN (ENSMICG00000009200)	AGPAT4 (ENSMICG00000009184) ##22	MAP3K4 (ENSMICG00000007663)	ENSMICG00000034395	SLC22A3 (ENSMICG00000007647)	SLC22A2 (ENSMICG00000007636)	SLC22A1 (ENSMICG00000007625)	IGF2R (ENSMICG00000007582)	PNLDC1 (ENSMICG00000008021)	MRPL18 (ENSMICG00000044845)	ENSMICG00000007998	ACAT2 (ENSMICG00000007988)	ENSMICG00000042830	WTAP (ENSMICG00000033919)	SOD2 (ENSMICG00000035793)	FNDC1 (ENSMICG00000010483)	TAGAP (ENSMICG00000031485)
Bushbaby	MODERN SPECIES	171	TTLL2 (ENSOGAG00000033615)	ENSOGAG00000033331	CCR6 (ENSOGAG00000025164)	CEP43 (ENSOGAG00000006310)	RNASET2 (ENSOGAG00000006308)	ENSOGAG00000033842	RPS6KA2 (ENSOGAG00000006306)	SFT2D1 (ENSOGAG00000006302)	PRR18 (ENSOGAG00000030765)	TBXT (ENSOGAG00000007863)	PDE10A (ENSOGAG00000007629)	C6orf118 (ENSOGAG00000007625)	QKI (ENSOGAG00000003634)	PACRG (ENSOGAG00000004947)	PRKN (ENSOGAG00000010979)	AGPAT4 (ENSOGAG00000004567) ##22	MAP3K4 (ENSOGAG00000004556)	ENSOGAG00000030352	SLC22A3 (ENSOGAG00000004550)	SLC22A2 (ENSOGAG00000005281)	ENSOGAG00000005280	SLC22A1 (ENSOGAG00000005276)	IGF2R (ENSOGAG00000005270)	MAS1 (ENSOGAG00000005268)	ENSOGAG00000031154	ENSOGAG00000031607	PNLDC1 (ENSOGAG00000007331)	MRPL18 (ENSOGAG00000007327)	TCP1 (ENSOGAG00000007320)	ACAT2 (ENSOGAG00000007315)	ENSOGAG00000007311
Haplorrhini	ANCESTRAL SPECIES	2	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00400000024673	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000157993
Tarsier	MODERN SPECIES	4805															ENSTSYG00000007825	AGPAT4 (ENSTSYG00000010911) ##22	MAP3K4 (ENSTSYG00000002616)
Simiiformes	ANCESTRAL SPECIES	5	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00400000024673	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00910000146857	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000157993
Platyrrhini	ANCESTRAL SPECIES	2	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543.f.b	ENSGT00910000146857	ENSGT00940000156543.e	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877.h	ENSGT00530000063558.B	ENSGT00940000157993
Cebidae	ANCESTRAL SPECIES	5	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543.f.b	ENSGT00910000146857	ENSGT00940000156543.e	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877.h	ENSGT00530000063558.B	ENSGT00940000157993
Cebidae_a	ANCESTRAL SPECIES	26	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543.f.b	ENSGT00910000146857	ENSGT00940000156543.e	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877.h	ENSGT00530000063558.B	ENSGT00940000157993
Bolivian squirrel monkey	MODERN SPECIES	101			CCR6 (ENSSBOG00000026892)	CEP43 (ENSSBOG00000021544)	RNASET2 (ENSSBOG00000022586)	RPS6KA2 (ENSSBOG00000023209)	MPC1 (ENSSBOG00000030115)	SFT2D1 (ENSSBOG00000020053)	TBXT (ENSSBOG00000023313)	ENSSBOG00000030891	ENSSBOG00000030466	C6orf118 (ENSSBOG00000024744)	QKI (ENSSBOG00000036267)	PACRG (ENSSBOG00000036098)	PRKN (ENSSBOG00000019735)	AGPAT4 (ENSSBOG00000023179) ##22	MAP3K4 (ENSSBOG00000022969)	PLG (ENSSBOG00000033802)	SLC22A3 (ENSSBOG00000024841)	SLC22A2 (ENSSBOG00000035664)	SLC22A1 (ENSSBOG00000029054)	IGF2R (ENSSBOG00000024078)	MAS1 (ENSSBOG00000019912)	PNLDC1 (ENSSBOG00000019135)	MRPL18 (ENSSBOG00000017384)	TCP1 (ENSSBOG00000022736)	ACAT2 (ENSSBOG00000035773)	ENSSBOG00000017833	ENSSBOG00000033881	FNDC1 (ENSSBOG00000027676)	TAGAP (ENSSBOG00000030452)
Capuchin	MODERN SPECIES	6													QKI (ENSCCAG00000025230)	PACRG (ENSCCAG00000034067)	PRKN (ENSCCAG00000024514)	AGPAT4 (ENSCCAG00000022357) ##22	MAP3K4 (ENSCCAG00000028977)	PLG (ENSCCAG00000034420)	SLC22A3 (ENSCCAG00000035674)	SLC22A2 (ENSCCAG00000020700)	SLC22A1 (ENSCCAG00000030320)	IGF2R (ENSCCAG00000010739)	MAS1 (ENSCCAG00000012059)	PNLDC1 (ENSCCAG00000026232)	MRPL18 (ENSCCAG00000027672)	TCP1 (ENSCCAG00000028316)	ACAT2 (ENSCCAG00000034076)	WTAP (ENSCCAG00000021303)	SOD2 (ENSCCAG00000025254)	FNDC1 (ENSCCAG00000021952)	TAGAP (ENSCCAG00000036010)
Marmoset	MODERN SPECIES	16	ENSCJAG00000073948	ENSCJAG00000053408	ENSCJAG00000000469	ENSCJAG00000077718	RPS6KA2 (ENSCJAG00000000462)	ENSCJAG00000012552	SFT2D1 (ENSCJAG00000012533)	PRR18 (ENSCJAG00000012527)	TBXT (ENSCJAG00000012508)	PDE10A (ENSCJAG00000012410)	ENSCJAG00000075058	ENSCJAG00000077202	QKI (ENSCJAG00000012368)	PACRG (ENSCJAG00000012365)	PRKN (ENSCJAG00000012355)	AGPAT4 (ENSCJAG00000012323) ##22	MAP3K4 (ENSCJAG00000012176)	ENSCJAG00000084439	PLG (ENSCJAG00000012132)	SLC22A3 (ENSCJAG00000012093)	SLC22A2 (ENSCJAG00000012056)	IGF2R (ENSCJAG00000011908)	ENSCJAG00000081097	PNLDC1 (ENSCJAG00000011865)	MRPL18 (ENSCJAG00000011859)	TCP1 (ENSCJAG00000011792)	ACAT2 (ENSCJAG00000011777)	WTAP (ENSCJAG00000011722)	SOD2 (ENSCJAG00000011664)	FNDC1 (ENSCJAG00000011622)	TAGAP (ENSCJAG00000011616)
Mas night monkey	MODERN SPECIES	265									ENSANAG00000037901	ENSANAG00000019760	C6orf118 (ENSANAG00000023807)	QKI (ENSANAG00000029669)	PACRG (ENSANAG00000020727)	ENSANAG00000019305	PRKN (ENSANAG00000032287)	AGPAT4 (ENSANAG00000037521) ##22	MAP3K4 (ENSANAG00000030551)	PLG (ENSANAG00000030380)	SLC22A3 (ENSANAG00000030361)	SLC22A2 (ENSANAG00000030328)	SLC22A1 (ENSANAG00000038334)	IGF2R (ENSANAG00000031865)	MAS1 (ENSANAG00000019902)	PNLDC1 (ENSANAG00000034713)	MRPL18 (ENSANAG00000033398)	TCP1 (ENSANAG00000033987)	ACAT2 (ENSANAG00000030553)	WTAP (ENSANAG00000027064)	SOD2 (ENSANAG00000024525)	FNDC1 (ENSANAG00000028811)	TAGAP (ENSANAG00000023564)
Catarrhini	ANCESTRAL SPECIES	5	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00400000024673	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00910000146857	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00910000148333	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000157183.a.a	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878.`b.a.a	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877
Cercopithecidae	ANCESTRAL SPECIES	34	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00400000024673	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00910000146857	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00910000148333	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000157183.a.a	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT00940000154629.B.db.b.a	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878.`b.a.a.a	ENSGT01030000234626.B.w	ENSGT00390000013931.a.b.b
Rhinopithecus	ANCESTRAL SPECIES	403						ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00940000157912	ENSGT00910000146857	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208
Black snub-nosed monkey	MODERN SPECIES	295						RPS6KA2 (ENSRBIG00000018635)	MPC1 (ENSRBIG00000036142)	SFT2D1 (ENSRBIG00000036071)	TBXT (ENSRBIG00000037010)	PDE10A (ENSRBIG00000023020)	ENSRBIG00000036166	C6orf118 (ENSRBIG00000004596)	QKI (ENSRBIG00000043656)	PACRG (ENSRBIG00000005726)	PRKN (ENSRBIG00000027594)	AGPAT4 (ENSRBIG00000031711) ##22	MAP3K4 (ENSRBIG00000036975)	PLG (ENSRBIG00000042750)
Golden snub-nosed monkey	MODERN SPECIES	1712											PDE10A (ENSRROG00000034670)	C6orf118 (ENSRROG00000040200)	QKI (ENSRROG00000040592)	PACRG (ENSRROG00000039063)	PRKN (ENSRROG00000029447)	AGPAT4 (ENSRROG00000038839) ##22	MAP3K4 (ENSRROG00000042666)	PLG (ENSRROG00000042779)
Cercopithecinae	ANCESTRAL SPECIES	6	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00400000024673	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00910000148333	ENSGT00880000138034	ENSGT00940000157183.a.a.b	ENSGT00940000155208	ENSGT00940000157183.a.a.a	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT00940000154629.B.db.b.a	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878.`b.a.a.a	ENSGT01030000234626.B.w.a
Vervet Monkey	MODERN SPECIES	4	CCR6 (ENSCSAG00000012111)	CEP43 (ENSCSAG00000012128)	RNASET2 (ENSCSAG00000012144)	ENSCSAG00000012150	RPS6KA2 (ENSCSAG00000012167)	SFT2D1 (ENSCSAG00000012180)	PRR18 (ENSCSAG00000012184)	TBXT (ENSCSAG00000012200)	ENSCSAG00000012208	PDE10A (ENSCSAG00000012225)	C6orf118 (ENSCSAG00000012234)	ENSCSAG00000012244	QKI (ENSCSAG00000012257)	PRKN (ENSCSAG00000012267)	ENSCSAG00000018983	AGPAT4 (ENSCSAG00000012273) ##22	MAP3K4 (ENSCSAG00000012282)	PLG (ENSCSAG00000012290)	LPA (ENSCSAG00000012297)	SLC22A3 (ENSCSAG00000012348)	SLC22A2 (ENSCSAG00000012370)	SLC22A1 (ENSCSAG00000012377)	IGF2R (ENSCSAG00000012403)	MAS1 (ENSCSAG00000012417)	ENSCSAG00000012433	PNLDC1 (ENSCSAG00000012478)	MRPL18 (ENSCSAG00000012516)	TCP1 (ENSCSAG00000012567)	ENSCSAG00000012584	WTAP (ENSCSAG00000012594)	SOD2 (ENSCSAG00000012601)
Cercopithecinae_a	ANCESTRAL SPECIES	6	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000153095.g.b.a.a.a.b.b.b	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00910000148333	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000157183.a.a.a	ENSGT00940000157183.a.a.b	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT00940000154629.B.db.b.a	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878.`b.a.a.a	ENSGT01030000234626.B.w.a
Cercopithecinae_b	ANCESTRAL SPECIES	17	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000153095.g.b.a.a.a.b.b.b	ENSGT00940000155310.b	ENSGT01090000260381	ENSGT00940000157330	ENSGT00390000011034.`c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00910000148333	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000157183.a.a.a	ENSGT00940000157183.a.a.b	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT00940000154629.B.db.b.a	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878.`b.a.a.a	ENSGT01030000234626.B.w.a
Olive baboon	MODERN SPECIES	16	ENSPANG00000041620	RPS6KA2 (ENSPANG00000018198)	MPC1 (ENSPANG00000030766)	SFT2D1 (ENSPANG00000000460)	PRR18 (ENSPANG00000035337)	TBXT (ENSPANG00000005068)	PDE10A (ENSPANG00000019045)	C6orf118 (ENSPANG00000010211)	ENSPANG00000047222	QKI (ENSPANG00000006711)	ENSPANG00000043294	ENSPANG00000040612	PACRG (ENSPANG00000030883)	ENSPANG00000048628	PRKN (ENSPANG00000022007)	AGPAT4 (ENSPANG00000043829) ##22	ENSPANG00000050992	MAP3K4 (ENSPANG00000013261)	PLG (ENSPANG00000007072)	ENSPANG00000038033	ENSPANG00000042063	ENSPANG00000048497	ENSPANG00000033663	SLC22A3 (ENSPANG00000025907)	SLC22A2 (ENSPANG00000008238)	SLC22A1 (ENSPANG00000012323)	IGF2R (ENSPANG00000018547)	MAS1 (ENSPANG00000024549)	PNLDC1 (ENSPANG00000022009)	MRPL18 (ENSPANG00000023667)	ENSPANG00000011086
Cercopithecinae_d	ANCESTRAL SPECIES	70										ENSGT00520000056310.A.d	ENSGT00940000153307.c.a.h.k.a.a	ENSGT00940000155310.b	ENSGT01090000260381	ENSGT00940000157330	ENSGT00390000011034.`c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000157183.a.a.a	ENSGT00940000157183.a.a.b	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT00940000154629.B.db.b.a	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878.`b.a.a.a	ENSGT01030000234626.B.w.a	ENSGT00390000013931.a.b.b.`b.a
Drill	MODERN SPECIES	370															ENSMLEG00000028291	AGPAT4 (ENSMLEG00000032130) ##22
Sooty mangabey	MODERN SPECIES	220				SFT2D1 (ENSCATG00000034006)	TBXT (ENSCATG00000038841)	ENSCATG00000038207	ENSCATG00000035247	PDE10A (ENSCATG00000039033)	ENSCATG00000040268	C6orf118 (ENSCATG00000034818)	ENSCATG00000016910	ENSCATG00000037623	ENSCATG00000038866	PACRG (ENSCATG00000036404)	PRKN (ENSCATG00000033190)	AGPAT4 (ENSCATG00000012223) ##22	MAP3K4 (ENSCATG00000038027)	ENSCATG00000034269	PLG (ENSCATG00000039756)
Macaca	ANCESTRAL SPECIES	9	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000153095.g.b.a.a.a.b.b.b	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000157183.a.a.a	ENSGT00940000157183.a.a.b	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT00940000154629.B.db.b.a	ENSGT00940000153167.A.a	ENSGT00390000006394.i.a	ENSGT00550000074878.`b.a.a.a	ENSGT01030000234626.B.w.a	ENSGT00390000013931.a.b.b.`b.a	ENSGT00940000163505.a.b.a.b
Macaca_a	ANCESTRAL SPECIES	26	ENSGT00530000063359.A	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034
Crab-eating macaque	MODERN SPECIES	14	ENSMFAG00000049160	RNASET2 (ENSMFAG00000039774)	ENSMFAG00000051223	RPS6KA2 (ENSMFAG00000032453)	MPC1 (ENSMFAG00000003954)	SFT2D1 (ENSMFAG00000039956)	ENSMFAG00000059048	ENSMFAG00000049559	TBXT (ENSMFAG00000030026)	PDE10A (ENSMFAG00000046132)	C6orf118 (ENSMFAG00000031329)	QKI (ENSMFAG00000044069)	ENSMFAG00000057576	PACRG (ENSMFAG00000039741)	PRKN (ENSMFAG00000002107)	AGPAT4 (ENSMFAG00000041781) ##22	MAP3K4 (ENSMFAG00000036572)	ENSMFAG00000061670	PLG (ENSMFAG00000050264)	ENSMFAG00000051812	ENSMFAG00000063217	ENSMFAG00000064690	SLC22A3 (ENSMFAG00000002893)	SLC22A2 (ENSMFAG00000031849)	SLC22A1 (ENSMFAG00000033700)	IGF2R (ENSMFAG00000034342)	MAS1 (ENSMFAG00000004332)	ENSMFAG00000062218	ENSMFAG00000051722	PNLDC1 (ENSMFAG00000041296)	ENSMFAG00000065624
Rhesus	MODERN SPECIES	14	CCR6 (ENSMMUG00000005676)	CEP43 (ENSMMUG00000005674)	RNASET2 (ENSMMUG00000005673)	RPS6KA2 (ENSMMUG00000005670)	MPC1 (ENSMMUG00000011739)	SFT2D1 (ENSMMUG00000011736)	PRR18 (ENSMMUG00000011700)	TBXT (ENSMMUG00000017047)	PDE10A (ENSMMUG00000023614)	C4H6orf118 (ENSMMUG00000023613)	ENSMMUG00000055955	QKI (ENSMMUG00000000428)	ENSMMUG00000054834	PACRG (ENSMMUG00000020412)	PRKN (ENSMMUG00000020410)	AGPAT4 (ENSMMUG00000006147) ##22	MAP3K4 (ENSMMUG00000006143)	ENSMMUG00000057619	PLG (ENSMMUG00000016945)	ENSMMUG00000016201	SLC22A3 (ENSMMUG00000005717)	SLC22A2 (ENSMMUG00000005715)	SLC22A1 (ENSMMUG00000015662)	IGF2R (ENSMMUG00000015658)	MAS1 (ENSMMUG00000016217)	PNLDC1 (ENSMMUG00000004181)	ENSMMUG00000052876	MRPL18 (ENSMMUG00000063964)	TCP1 (ENSMMUG00000012846)	ENSMMUG00000012843	WTAP (ENSMMUG00000012837)
Pig-tailed macaque	MODERN SPECIES	139	CEP43 (ENSMNEG00000044780)	RNASET2 (ENSMNEG00000033732)	RPS6KA2 (ENSMNEG00000028453)	MPC1 (ENSMNEG00000030001)	SFT2D1 (ENSMNEG00000034299)	TBXT (ENSMNEG00000040011)	ENSMNEG00000037990	ENSMNEG00000022920	ENSMNEG00000038868	PDE10A (ENSMNEG00000027445)	C6orf118 (ENSMNEG00000036512)	ENSMNEG00000026836	ENSMNEG00000043724	PACRG (ENSMNEG00000042289)	PRKN (ENSMNEG00000027725)	AGPAT4 (ENSMNEG00000037275) ##22	MAP3K4 (ENSMNEG00000032311)	PLG (ENSMNEG00000042095)
Hominoidea	ANCESTRAL SPECIES	4	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000154957.B.s.b	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00910000146857	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00910000148333	ENSGT00880000138034	ENSGT00940000155208.o.a	ENSGT00940000157183.a.a	ENSGT00940000155208.p	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00940000154629.B.db.b.a	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878.`b.a.a	ENSGT01030000234626.B
Hominidae	ANCESTRAL SPECIES	5	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000154957.B.s.b	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00910000146857	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00910000148333	ENSGT00880000138034	ENSGT00940000155208.o.a	ENSGT00940000157183.a.a	ENSGT00940000155208.p	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00940000154629.B.db.b.a	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878.`b.a.a	ENSGT01030000234626.B
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	4	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a.a	ENSGT00940000154957.B.s.b	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00910000146857	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00910000148333	ENSGT00880000138034	ENSGT00940000155208.o.a	ENSGT00940000157183.a.a	ENSGT00940000155208.p	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00940000154629.B.db.b.a	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878.`b.a.a	ENSGT01030000234626.B
Gorilla	MODERN SPECIES	241																ENSGGOG00000036334 ##22
Homo/Pan group	ANCESTRAL SPECIES	5	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a.a	ENSGT00940000154957.B.s.b	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00910000146857	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00910000148333	ENSGT00880000138034	ENSGT00940000155208.o.a	ENSGT00940000157183.a.a	ENSGT00940000155208.p	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00940000154629.B.db.b.a	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878.`b.a.a	ENSGT01030000234626.B
Pan	ANCESTRAL SPECIES	5	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a.a	ENSGT00940000154957.B.s.b	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00910000146857	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00910000148333	ENSGT00880000138034	ENSGT00940000155208.o.a	ENSGT00940000157183.a.a	ENSGT00940000155208.p	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00940000154629.B.db.b.a	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878.`b.a.a	ENSGT01030000234626.B
Chimpanzee	MODERN SPECIES	19	ENSPTRG00000018802	GPR31 (ENSPTRG00000018800)	CEP43 (ENSPTRG00000033965)	RNASET2 (ENSPTRG00000018796)	ENSPTRG00000047422	RPS6KA2 (ENSPTRG00000018793)	MPC1 (ENSPTRG00000024084)	SFT2D1 (ENSPTRG00000023700)	PRR18 (ENSPTRG00000018790)	TBXT (ENSPTRG00000018789)	PDE10A (ENSPTRG00000018787)	C6H6orf118 (ENSPTRG00000018786)	QKI (ENSPTRG00000018785)	PACRG (ENSPTRG00000048824)	PRKN (ENSPTRG00000018781)	AGPAT4 (ENSPTRG00000018779) ##22	ENSPTRG00000048118	MAP3K4 (ENSPTRG00000046415)	PLG (ENSPTRG00000018774)	LPA (ENSPTRG00000018770)	SLC22A3 (ENSPTRG00000018769)	SLC22A2 (ENSPTRG00000018768)	SLC22A1 (ENSPTRG00000018767)	ENSPTRG00000051861	IGF2R (ENSPTRG00000018764)	MAS1 (ENSPTRG00000018763)	PNLDC1 (ENSPTRG00000018762)	MRPL18 (ENSPTRG00000018761)	TCP1 (ENSPTRG00000018760)	ACAT2 (ENSPTRG00000018759)	WTAP (ENSPTRG00000018758)
Bonobo	MODERN SPECIES	19	GPR31 (ENSPPAG00000013225)	CCR6 (ENSPPAG00000035908)	CEP43 (ENSPPAG00000039127)	RNASET2 (ENSPPAG00000031557)	ENSPPAG00000038016	RPS6KA2 (ENSPPAG00000038721)	ENSPPAG00000034758	SFT2D1 (ENSPPAG00000001173)	TBXT (ENSPPAG00000030203)	ENSPPAG00000025444	ENSPPAG00000034143	C6orf118 (ENSPPAG00000032502)	ENSPPAG00000038059	PACRG (ENSPPAG00000000755)	PRKN (ENSPPAG00000034661)	AGPAT4 (ENSPPAG00000041903) ##22	ENSPPAG00000006234	MAP3K4 (ENSPPAG00000037745)	PLG (ENSPPAG00000042434)	ENSPPAG00000034032	ENSPPAG00000026664	SLC22A3 (ENSPPAG00000009760)	SLC22A2 (ENSPPAG00000012601)	SLC22A1 (ENSPPAG00000017979)	ENSPPAG00000029247	IGF2R (ENSPPAG00000022058)	MAS1 (ENSPPAG00000003542)	PNLDC1 (ENSPPAG00000026651)	MRPL18 (ENSPPAG00000001652)	TCP1 (ENSPPAG00000030713)	ACAT2 (ENSPPAG00000043658)
Human	MODERN SPECIES	18	ENSG00000272980	CEP43 (ENSG00000213066)	RNASET2 (ENSG00000026297)	ENSG00000249141	RAMACL (ENSG00000235272)	RPS6KA2 (ENSG00000071242)	MPC1 (ENSG00000060762)	SFT2D1 (ENSG00000198818)	PRR18 (ENSG00000176381)	TBXT (ENSG00000164458)	PDE10A (ENSG00000112541)	C6orf118 (ENSG00000112539)	QKI (ENSG00000112531)	PACRG (ENSG00000112530)	PRKN (ENSG00000185345)	AGPAT4 (ENSG00000026652) ##22	MAP3K4 (ENSG00000085511)	PLG (ENSG00000122194)	LPA (ENSG00000198670)	SLC22A3 (ENSG00000146477)	SLC22A2 (ENSG00000112499)	SLC22A1 (ENSG00000175003)	IGF2R (ENSG00000197081)	MAS1 (ENSG00000130368)	PNLDC1 (ENSG00000146453)	MRPL18 (ENSG00000112110)	TCP1 (ENSG00000120438)	ACAT2 (ENSG00000120437)	WTAP (ENSG00000146457)	SOD2 (ENSG00000291237)	FNDC1 (ENSG00000164694)
Orangutan	MODERN SPECIES	19	CCR6 (ENSPPYG00000017168)	CEP43 (ENSPPYG00000032640)	RNASET2 (ENSPPYG00000037542)	RPS6KA2 (ENSPPYG00000017167)	ENSPPYG00000017166	ENSPPYG00000017165	PRR18 (ENSPPYG00000017164)	ENSPPYG00000032308	TBXT (ENSPPYG00000017163)	PDE10A (ENSPPYG00000017162)	C6orf118 (ENSPPYG00000017161)	QKI (ENSPPYG00000017160)	ENSPPYG00000035748	PACRG (ENSPPYG00000017159)	PRKN (ENSPPYG00000017158)	AGPAT4 (ENSPPYG00000017156) ##22	ENSPPYG00000038768	MAP3K4 (ENSPPYG00000017155)	PLG (ENSPPYG00000017153)	ENSPPYG00000039278	ENSPPYG00000029841	SLC22A3 (ENSPPYG00000017152)	SLC22A2 (ENSPPYG00000017151)	SLC22A1 (ENSPPYG00000017150)	IGF2R (ENSPPYG00000017149)	MAS1 (ENSPPYG00000017261)	PNLDC1 (ENSPPYG00000017148)	ENSPPYG00000017147	TCP1 (ENSPPYG00000017146)	ACAT2 (ENSPPYG00000017145)	WTAP (ENSPPYG00000017144)
Gibbon	MODERN SPECIES	18	ENSNLEG00000011641	CCR6 (ENSNLEG00000032795)	CEP43 (ENSNLEG00000011605)	RNASET2 (ENSNLEG00000027795)	ENSNLEG00000034042	RPS6KA2 (ENSNLEG00000011560)	ENSNLEG00000032002	SFT2D1 (ENSNLEG00000031636)	TBXT (ENSNLEG00000011552)	ENSNLEG00000033543	ENSNLEG00000011508	C6orf118 (ENSNLEG00000011493)	ENSNLEG00000011478	PACRG (ENSNLEG00000011474)	PRKN (ENSNLEG00000011473)	ENSNLEG00000011464 ##22	MAP3K4 (ENSNLEG00000011428)	ENSNLEG00000011380	ENSNLEG00000011373	SLC22A2 (ENSNLEG00000011367)	ENSNLEG00000035654	ENSNLEG00000035869	IGF2R (ENSNLEG00000011313)	PNLDC1 (ENSNLEG00000011282)	MRPL18 (ENSNLEG00000011269)	TCP1 (ENSNLEG00000011178)	ACAT2 (ENSNLEG00000011115)	WTAP (ENSNLEG00000028233)	SOD2 (ENSNLEG00000011061)	FNDC1 (ENSNLEG00000011059)	TAGAP (ENSNLEG00000010995)
Laurasiatheria	ANCESTRAL SPECIES	7	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00950000186343	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B
Laurasiatheria_a	ANCESTRAL SPECIES	7	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00950000186343	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000013931.a.a.b	ENSGT00390000011877
Artiodactyla	ANCESTRAL SPECIES	19	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00950000186343	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000013931.a.a.b	ENSGT00390000011877
Suina	ANCESTRAL SPECIES	18	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00940000157912	ENSGT00940000156543	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000157993
Pig	MODERN SPECIES		CCR6 (ENSSSCG00000024562)	ENSSSCG00000034196	CEP43 (ENSSSCG00000004023)	ENSSSCG00000004024	RPS6KA2 (ENSSSCG00000004022)	ENSSSCG00000032916	SFT2D1 (ENSSSCG00000004020)	TBXT (ENSSSCG00000036609)	PDE10A (ENSSSCG00000004027)	ENSSSCG00000051306	QKI (ENSSSCG00000004029)	PACRG (ENSSSCG00000038153)	ENSSSCG00000047165	PRKN (ENSSSCG00000004032)	ENSSSCG00000053549	AGPAT4 (ENSSSCG00000004033) ##22	MAP3K4 (ENSSSCG00000004037)	PLG (ENSSSCG00000004038)	SLC22A3 (ENSSSCG00000004039)	SLC22A2 (ENSSSCG00000004040)	SLC22A1 (ENSSSCG00000004041)	IGF2R (ENSSSCG00000004044)	MAS1 (ENSSSCG00000059431)	PNLDC1 (ENSSSCG00000004046)	MRPL18 (ENSSSCG00000004047)	TCP1 (ENSSSCG00000004048)	ACAT2 (ENSSSCG00000004049)	WTAP (ENSSSCG00000004050)	SOD2 (ENSSSCG00000040317)	FNDC1 (ENSSSCG00000004052)	TAGAP (ENSSSCG00000004053)
Chacoan peccary	MODERN SPECIES	58															ENSCWAG00000002429	AGPAT4 (ENSCWAG00000002443) ##22	MAP3K4 (ENSCWAG00000002506)	ENSCWAG00000002821	SLC22A3 (ENSCWAG00000002861)	SLC22A2 (ENSCWAG00000002880)	SLC22A1 (ENSCWAG00000002901)	IGF2R (ENSCWAG00000002925)	MAS1 (ENSCWAG00000002975)	ENSCWAG00000002985	PNLDC1 (ENSCWAG00000003002)	MRPL18 (ENSCWAG00000003059)	TCP1 (ENSCWAG00000003074)	ACAT2 (ENSCWAG00000003116)	WTAP (ENSCWAG00000003142)	SOD2 (ENSCWAG00000003162)	FNDC1 (ENSCWAG00000003188)
Artiodactyla_a	ANCESTRAL SPECIES	21	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00950000186343	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000013931.a.a.b	ENSGT00390000011877
Camelidae	ANCESTRAL SPECIES	37	ENSGT00530000063359.A	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000157993
Alpaca	MODERN SPECIES	988															PRKN (ENSVPAG00000003286)	ENSVPAG00000003284 ##22	MAP3K4 (ENSVPAG00000003283)	SLC22A3 (ENSVPAG00000003282)
Arabian camel	MODERN SPECIES	34	UNC93A (ENSCDRG00005007860)	GPR31 (ENSCDRG00005007976)	CCR6 (ENSCDRG00005007993)	CEP43 (ENSCDRG00005008019)	RNASET2 (ENSCDRG00005008141)	RPS6KA2 (ENSCDRG00005008268)	ENSCDRG00005008762	SFT2D1 (ENSCDRG00005008896)	ENSCDRG00005009017	TBXT (ENSCDRG00005009061)	PDE10A (ENSCDRG00005009275)	C6orf118 (ENSCDRG00005010197)	QKI (ENSCDRG00005010246)	PACRG (ENSCDRG00005010327)	PRKN (ENSCDRG00005010399)	AGPAT4 (ENSCDRG00005011648) ##22	MAP3K4 (ENSCDRG00005011806)	ENSCDRG00005013803	SLC22A3 (ENSCDRG00005014054)	SLC22A2 (ENSCDRG00005014141)	SLC22A1 (ENSCDRG00005014227)	IGF2R (ENSCDRG00005014304)	MAS1 (ENSCDRG00005014532)	PNLDC1 (ENSCDRG00005014558)	MRPL18 (ENSCDRG00005014810)	TCP1 (ENSCDRG00005014875)	ACAT2 (ENSCDRG00005015012)	WTAP (ENSCDRG00005015081)	MnSOD (ENSCDRG00005015180)	FNDC1 (ENSCDRG00005015292)	TAGAP (ENSCDRG00005015381)
Artiodactyla_b	ANCESTRAL SPECIES	18	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00950000186343	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000013931.a.a.b	ENSGT00390000011877
Cetacea	ANCESTRAL SPECIES	18	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00950000186343	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00390000017281.j	ENSGT00530000063558.B
Odontoceti	ANCESTRAL SPECIES	18	ENSGT00530000063359.A	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00390000017281.j	ENSGT00530000063558.B
Odontoceti_a	ANCESTRAL SPECIES	16	ENSGT00530000063359.A	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00390000017281.j	ENSGT00530000063558.B
Odontoceti_b	ANCESTRAL SPECIES	18	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00950000186343	ENSGT00940000153877.h.c.b.b	ENSGT00940000154508.a.a.h	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00390000018085.a.b.b	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00390000017281.j
Monodontidae	ANCESTRAL SPECIES	18	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00950000186343	ENSGT00940000153877.h.c.b.b	ENSGT00940000154508.a.a.h	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00390000018085.a.b.b	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00390000017281.j
Beluga whale	MODERN SPECIES	80	FGFR1OP (ENSDLEG00000008619)	RNASET2 (ENSDLEG00000008582)	RPS6KA2 (ENSDLEG00000008370)	MPC1 (ENSDLEG00000008231)	SFT2D1 (ENSDLEG00000008117)	ENSDLEG00000014310	TBXT (ENSDLEG00000014293)	PDE10A (ENSDLEG00000014196)	C6orf118 (ENSDLEG00000014153)	QKI (ENSDLEG00000014103)	ENSDLEG00000014088	ENSDLEG00000014077	ENSDLEG00000014063	ENSDLEG00000014046	ENSDLEG00000014031	AGPAT4 (ENSDLEG00000013962) ##22	MAP3K4 (ENSDLEG00000013778)	PLG (ENSDLEG00000013736)	SLC22A3 (ENSDLEG00000013670)	SLC22A2 (ENSDLEG00000013647)	SLC22A1 (ENSDLEG00000013591)	IGF2R (ENSDLEG00000013373)	MAS1 (ENSDLEG00000013351)	PNLDC1 (ENSDLEG00000013298)	MRPL18 (ENSDLEG00000013282)	TCP1 (ENSDLEG00000013249)	ACAT2 (ENSDLEG00000013224)	WTAP (ENSDLEG00000013205)	SOD2 (ENSDLEG00000013188)	ENSDLEG00000013163	ENSDLEG00000013131
Narwhal	MODERN SPECIES	301	AFDN (ENSMMNG00015012415)	UNC93A (ENSMMNG00015012361)	GPR31 (ENSMMNG00015012351)	CCR6 (ENSMMNG00015012341)	CEP43 (ENSMMNG00015012318)	RNASET2 (ENSMMNG00015012292)	RPS6KA2 (ENSMMNG00015012184)	MPC1 (ENSMMNG00015012133)	SFT2D1 (ENSMMNG00015012112)	TBXT (ENSMMNG00015012069)	PDE10A (ENSMMNG00015011925)	C6orf118 (ENSMMNG00015011860)	QKI (ENSMMNG00015011839)	PACRG (ENSMMNG00015011827)	ENSMMNG00015011816	AGPAT4 (ENSMMNG00015011728) ##22	MAP3K4 (ENSMMNG00015011572)	ENSMMNG00015011493	SLC22A3 (ENSMMNG00015011477)	SLC22A2 (ENSMMNG00015011459)	ENSMMNG00015011446	SLC22A1 (ENSMMNG00015011429)	IGF2R (ENSMMNG00015011406)	MAS1 (ENSMMNG00015011391)	PNLDC1 (ENSMMNG00015011367)	MRPL18 (ENSMMNG00015011349)	TCP1 (ENSMMNG00015011321)	ACAT2 (ENSMMNG00015011293)	WTAP (ENSMMNG00015011260)	SOD2 (ENSMMNG00015011230)	ENSMMNG00015011212
Vaquita	MODERN SPECIES	3	UNC93A (ENSPSNG00000011811)	GPR31 (ENSPSNG00000011991)	CCR6 (ENSPSNG00000012011)	CEP43 (ENSPSNG00000012059)	RNASET2 (ENSPSNG00000012163)	RPS6KA2 (ENSPSNG00000012290)	MPC1 (ENSPSNG00000012700)	SFT2D1 (ENSPSNG00000012816)	TBXT (ENSPSNG00000012892)	PDE10A (ENSPSNG00000013372)	QKI (ENSPSNG00000015355)	PACRG (ENSPSNG00000015572)	PRKN (ENSPSNG00000015749)	ENSPSNG00000016356	ENSPSNG00000016413	AGPAT4 (ENSPSNG00000016495) ##22	MAP3K4 (ENSPSNG00000016678)	ENSPSNG00000016905	SLC22A3 (ENSPSNG00000017154)	SLC22A2 (ENSPSNG00000017306)	ENSPSNG00000017468	ENSPSNG00000017517	IGF2R (ENSPSNG00000017592)	MAS1 (ENSPSNG00000017797)	PNLDC1 (ENSPSNG00000017839)	MRPL18 (ENSPSNG00000018155)	TCP1 (ENSPSNG00000018222)	ACAT2 (ENSPSNG00000018304)	WTAP (ENSPSNG00000018363)	SOD2 (ENSPSNG00000018468)	ENSPSNG00000018560
Dolphin	MODERN SPECIES	914													QKI (ENSTTRG00000012050)	PACRG (ENSTTRG00000012041)	PRKN (ENSTTRG00000012037)	AGPAT4 (ENSTTRG00000012034) ##22	MAP3K4 (ENSTTRG00000012031)	SLC22A3 (ENSTTRG00000012027)
Sperm whale	MODERN SPECIES	1185																AGPAT4 (ENSPCTG00005016119) ##22
Blue whale	MODERN SPECIES	3	GPR31 (ENSBMSG00010009771)	CCR6 (ENSBMSG00010009781)	CEP43 (ENSBMSG00010009801)	ENSBMSG00010009839	RPS6KA2 (ENSBMSG00010009920)	MPC1 (ENSBMSG00010010171)	SFT2D1 (ENSBMSG00010010197)	TBXT (ENSBMSG00010010219)	PDE10A (ENSBMSG00010010298)	C6orf118 (ENSBMSG00010010372)	QKI (ENSBMSG00010010393)	ENSBMSG00010010411	ENSBMSG00010010418	PRKN (ENSBMSG00010010461)	ENSBMSG00010010664	AGPAT4 (ENSBMSG00010010688) ##22	MAP3K4 (ENSBMSG00010010709)	ENSBMSG00010010741	SLC22A3 (ENSBMSG00010010779)	SLC22A2 (ENSBMSG00010010814)	SLC22A1 (ENSBMSG00010010839)	ENSBMSG00010010858	IGF2R (ENSBMSG00010010889)	MAS1 (ENSBMSG00010010947)	PNLDC1 (ENSBMSG00010010984)	MRPL18 (ENSBMSG00010011042)	TCP1 (ENSBMSG00010011064)	ACAT2 (ENSBMSG00010011102)	ENSBMSG00010011125	ENSBMSG00010011159	ENSBMSG00010011186
Pecora	ANCESTRAL SPECIES	19	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a.c	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000013931.a.a.b	ENSGT00390000011877
Yarkand deer	MODERN SPECIES	18	ENSCHYG00000026568	GPR31 (ENSCHYG00000026561)	CCR6 (ENSCHYG00000026557)	ENSCHYG00000026541	RNASET2 (ENSCHYG00000026522)	RPS6KA2 (ENSCHYG00000026381)	MPC1 (ENSCHYG00000026331)	SFT2D1 (ENSCHYG00000026311)	TBXT (ENSCHYG00000026275)	ENSCHYG00000026255	PDE10A (ENSCHYG00000026108)	C6orf118 (ENSCHYG00000026045)	QKI (ENSCHYG00000026014)	PACRG (ENSCHYG00000025979)	PRKN (ENSCHYG00000025824)	AGPAT4 (ENSCHYG00000025772) ##22	MAP3K4 (ENSCHYG00000025579)	ENSCHYG00000025465	SLC22A3 (ENSCHYG00000025420)	SLC22A2 (ENSCHYG00000025351)	SLC22A1 (ENSCHYG00000025285)	IGF2R (ENSCHYG00000023202)	MAS1 (ENSCHYG00000022925)	PNLDC1 (ENSCHYG00000022800)	MRPL18 (ENSCHYG00000022773)	TCP1 (ENSCHYG00000022554)	ACAT2 (ENSCHYG00000022487)	WTAP (ENSCHYG00000022403)	ENSCHYG00000022090	FNDC1 (ENSCHYG00000021187)	ENSCHYG00000021069
Percora_a	ANCESTRAL SPECIES	21	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a.c	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000013931.a.a.b	ENSGT00390000011877
Siberian musk deer	MODERN SPECIES	61	TTLL2 (ENSMMSG00000004233)	GPR31 (ENSMMSG00000004230)	CCR6 (ENSMMSG00000004222)	CEP43 (ENSMMSG00000004190)	RNASET2 (ENSMMSG00000004161)	RPS6KA2 (ENSMMSG00000004107)	MPC1 (ENSMMSG00000004070)	ENSMMSG00000004063	TBXT (ENSMMSG00000004018)	PDE10A (ENSMMSG00000003706)	C6orf118 (ENSMMSG00000003599)	QKI (ENSMMSG00000003545)	PACRG (ENSMMSG00000003517)	ENSMMSG00000003500	PRKN (ENSMMSG00000003365)	AGPAT4 (ENSMMSG00000003318) ##22	MAP3K4 (ENSMMSG00000002913)	ENSMMSG00000002739	ENSMMSG00000002676	SLC22A3 (ENSMMSG00000002642)	SLC22A2 (ENSMMSG00000002601)	SLC22A1 (ENSMMSG00000002522)	IGF2R (ENSMMSG00000002420)	MAS1 (ENSMMSG00000002388)	PNLDC1 (ENSMMSG00000002313)	MRPL18 (ENSMMSG00000002291)	TCP1 (ENSMMSG00000002241)	ENSMMSG00000002220	WTAP (ENSMMSG00000002177)	ENSMMSG00000002137	FNDC1 (ENSMMSG00000002110)
Bovidae	ANCESTRAL SPECIES	21	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a.c.a	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000013931.a.a.b	ENSGT00390000011877
Caprinae	ANCESTRAL SPECIES		ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a.c.a	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b.d	ENSGT00390000011877	ENSGT00390000006208.a.f
Rambouillet Sheep	MODERN SPECIES	24	GPR31 (ENSOARG00020026138)	CCR6 (ENSOARG00020026137)	CEP43 (ENSOARG00020026135)	RNASET2 (ENSOARG00020026133)	RPS6KA2 (ENSOARG00020026129)	MPC1 (ENSOARG00020026121)	ENSOARG00020026119	T (ENSOARG00020026117)	ENSOARG00020026114	PDE10A (ENSOARG00020026110)	C6orf118 (ENSOARG00020026106)	QKI (ENSOARG00020026100)	ENSOARG00020026099	PACRG (ENSOARG00020026098)	PRKN (ENSOARG00020026093)	AGPAT4 (ENSOARG00020026075) ##22	MAP3K4 (ENSOARG00020025996)	ENSOARG00020025929	SLC22A3 (ENSOARG00020025917)	SLC22A2 (ENSOARG00020025906)	SLC22A1 (ENSOARG00020025899)	IGF2R (ENSOARG00020007810)	MAS1 (ENSOARG00020006641)	PNLDC1 (ENSOARG00020006365)	MRPL18 (ENSOARG00020006305)	TCP1 (ENSOARG00020006218)	ENSOARG00020006176	WTAP (ENSOARG00020006133)	SOD2 (ENSOARG00020006059)	ENSOARG00020006017	ENSOARG00020005992
Goat	MODERN SPECIES	28	ENSCHIG00000010788	TBXT (ENSCHIG00000011143)	ENSCHIG00000021177	ENSCHIG00000005334	ENSCHIG00000021845	PDE10A (ENSCHIG00000022822)	C6orf118 (ENSCHIG00000013027)	ENSCHIG00000012121	QKI (ENSCHIG00000018891)	ENSCHIG00000015636	ENSCHIG00000022840	ENSCHIG00000010884	ENSCHIG00000016416	ENSCHIG00000025260	ENSCHIG00000020982	AGPAT4 (ENSCHIG00000016729) ##22	ENSCHIG00000024395	MAP3K4 (ENSCHIG00000009330)	ENSCHIG00000011198	SLC22A3 (ENSCHIG00000021136)	SLC22A2 (ENSCHIG00000006824)	SLC22A1 (ENSCHIG00000014819)	IGF2R (ENSCHIG00000010830)	MAS1 (ENSCHIG00000012964)	PNLDC1 (ENSCHIG00000003141)	ENSCHIG00000023286	TCP1 (ENSCHIG00000016503)	ENSCHIG00000017426	ENSCHIG00000026430	SOD2 (ENSCHIG00000009947)	ENSCHIG00000010882
Bovinae	ANCESTRAL SPECIES	35	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a.c.a	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000013931.a.a.b	ENSGT00390000011877
American bison	MODERN SPECIES	2999											C6orf118 (ENSBBBG00000015578)	ENSBBBG00000015582	QKI (ENSBBBG00000015623)	PACRG (ENSBBBG00000015645)	PRKN (ENSBBBG00000015746)	ENSBBBG00000015762 ##22
Bos	ANCESTRAL SPECIES	19	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00960000189610	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a.c.a	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000013931.a.a.b	ENSGT00390000011877
Bos_b	ANCESTRAL SPECIES	42	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00960000189610	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a.c.a	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00390000006208.a.f
Hybrid Bos Indicus	MODERN SPECIES	28	GPR31 (ENSBIXG00005012976)	CCR6 (ENSBIXG00005007110)	CEP43 (ENSBIXG00005013080)	RNASET2 (ENSBIXG00005013120)	RPS6KA2 (ENSBIXG00005013242)	MPC1 (ENSBIXG00005006802)	SFT2D1 (ENSBIXG00005013324)	TBXT (ENSBIXG00005013358)	PDE10A (ENSBIXG00005013474)	C6orf118 (ENSBIXG00005013567)	ENSBIXG00005001665	QKI (ENSBIXG00005007533)	ENSBIXG00005013801	PACRG (ENSBIXG00005013833)	PRKN (ENSBIXG00005007712)	AGPAT4 (ENSBIXG00005014474) ##22	ENSBIXG00005006130	MAP3K4 (ENSBIXG00005002084)	ENSBIXG00005007542	SLC22A3 (ENSBIXG00005014926)	SLC22A2 (ENSBIXG00005006381)	SLC22A1 (ENSBIXG00005015034)	IGF2R (ENSBIXG00005015279)	MAS1 (ENSBIXG00005015332)	PNLDC1 (ENSBIXG00005015403)	MRPL18 (ENSBIXG00005015451)	TCP1 (ENSBIXG00005015526)	ENSBIXG00005006136	ENSBIXG00005015570	WTAP (ENSBIXG00005015616)	ENSBIXG00005005505
Cow	MODERN SPECIES	28	TTLL2 (ENSBTAG00000031481)	GPR31 (ENSBTAG00000014497)	CCR6 (ENSBTAG00000014496)	ENSBTAG00000054087	CEP43 (ENSBTAG00000014495)	RNASET2 (ENSBTAG00000014494)	RPS6KA2 (ENSBTAG00000021741)	MPC1 (ENSBTAG00000027879)	SFT2D1 (ENSBTAG00000002993)	TBXT (ENSBTAG00000018681)	PDE10A (ENSBTAG00000007758)	C9H6orf118 (ENSBTAG00000015485)	QKI (ENSBTAG00000011593)	PACRG (ENSBTAG00000011106)	PRKN (ENSBTAG00000018996)	AGPAT4 (ENSBTAG00000007668) ##22	ENSBTAG00000052236	MAP3K4 (ENSBTAG00000020079)	PLG (ENSBTAG00000001271)	SLC22A3 (ENSBTAG00000039080)	SLC22A2 (ENSBTAG00000009583)	SLC22A1 (ENSBTAG00000008540)	IGF2R (ENSBTAG00000002402)	MAS1 (ENSBTAG00000031724)	PNLDC1 (ENSBTAG00000015166)	MRPL18 (ENSBTAG00000001289)	TCP1 (ENSBTAG00000002829)	ACAT2 (ENSBTAG00000002827)	WTAP (ENSBTAG00000007974)	SOD2 (ENSBTAG00000006523)	ENSBTAG00000052316
Bos_a	ANCESTRAL SPECIES	54	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00960000189610	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a.c.a	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.a.a.b	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000013931.a.a.b	ENSGT00390000011877
Domestic yak	MODERN SPECIES	1	CCR6 (ENSBGRG00000012482)	CEP43 (ENSBGRG00000012562)	ENSBGRG00000012908	RPS6KA2 (ENSBGRG00000013026)	MPC1 (ENSBGRG00000013665)	ENSBGRG00000013792	TBXT (ENSBGRG00000013963)	ENSBGRG00000014027	PDE10A (ENSBGRG00000014116)	C6orf118 (ENSBGRG00000014805)	QKI (ENSBGRG00000015040)	ENSBGRG00000015527	PACRG (ENSBGRG00000015551)	PRKN (ENSBGRG00000015642)	ENSBGRG00000016774	AGPAT4 (ENSBGRG00000016794) ##22	MAP3K4 (ENSBGRG00000017036)	ENSBGRG00000020575	ENSBGRG00000020646	SLC22A3 (ENSBGRG00000020975)	SLC22A2 (ENSBGRG00000021163)	SLC22A1 (ENSBGRG00000021387)	IGF2R (ENSBGRG00000021970)	ENSBGRG00000026486	MAS1 (ENSBGRG00000026489)	PNLDC1 (ENSBGRG00000026494)	MRPL18 (ENSBGRG00000026525)	TCP1 (ENSBGRG00000026527)	ENSBGRG00000026550	ENSBGRG00000026557	ENSBGRG00000026563
Wild yak	MODERN SPECIES	1168																ENSBMUG00000003343 ##22	ENSBMUG00000003268	MAP3K4 (ENSBMUG00000003212)	ENSBMUG00000003160	SLC22A3 (ENSBMUG00000003131)	SLC22A2 (ENSBMUG00000003107)	SLC22A1 (ENSBMUG00000003078)	IGF2R (ENSBMUG00000003027)	MAS1 (ENSBMUG00000002956)	PNLDC1 (ENSBMUG00000002939)	MRPL18 (ENSBMUG00000002874)	TCP1 (ENSBMUG00000002835)	ACAT2 (ENSBMUG00000002762)	ENSBMUG00000002743	SOD2 (ENSBMUG00000002696)	ENSBMUG00000002680
Laurasiatheria_b	ANCESTRAL SPECIES	7	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000013931.a.a.b	ENSGT00390000011877
Laurasiatheria_c	ANCESTRAL SPECIES	6	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988.i.a	ENSGT00390000018525.a.a	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000013931.a.a.b	ENSGT00390000011877
Chiroptera	ANCESTRAL SPECIES	3	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988.j	ENSGT00390000018525.a.a	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000157993
Megabat	MODERN SPECIES	3507																AGPAT4 (ENSPVAG00000017059) ##22	MAP3K4 (ENSPVAG00000017058)
Microchiroptera	ANCESTRAL SPECIES	4	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988.j	ENSGT00390000018525.a.a	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000157993
Greater horseshoe bat	MODERN SPECIES	21													QKI (ENSRFEG00010008753)	PACRG (ENSRFEG00010008690)	PRKN (ENSRFEG00010008431)	AGPAT4 (ENSRFEG00010008317) ##22	MAP3K4 (ENSRFEG00010007347)	ENSRFEG00010007176	SLC22A3 (ENSRFEG00010007045)	ENSRFEG00010007005	SLC22A2 (ENSRFEG00010006879)	SLC22A1 (ENSRFEG00010006710)	IGF2R (ENSRFEG00010006536)	MAS1 (ENSRFEG00010006507)	PNLDC1 (ENSRFEG00010006385)	MRPL18 (ENSRFEG00010006349)	ENSRFEG00010006182	ACAT2 (ENSRFEG00010006101)	ENSRFEG00010006054	SOD2 (ENSRFEG00010005963)	FNDC1 (ENSRFEG00010005884)
Microbat	MODERN SPECIES	1670																AGPAT4 (ENSMLUG00000023974) ##22	MAP3K4 (ENSMLUG00000014478)	ENSMLUG00000010626	SLC22A3 (ENSMLUG00000005566)
Equus	ANCESTRAL SPECIES	46	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988.i.a	ENSGT00390000018525.a.a	ENSGT00690000103860	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000013931.a.a.b	ENSGT00390000011877
Horse	MODERN SPECIES	24	ENSECAG00000003447	GPR31 (ENSECAG00000005409)	CCR6 (ENSECAG00000005185)	CEP43 (ENSECAG00000019040)	RNASET2 (ENSECAG00000038762)	RPS6KA2 (ENSECAG00000020508)	MPC1 (ENSECAG00000020275)	SFT2D1 (ENSECAG00000019479)	ENSECAG00000028989	TBXT (ENSECAG00000007994)	PDE10A (ENSECAG00000008004)	C31H6orf118 (ENSECAG00000000126)	QKI (ENSECAG00000017504)	PACRG (ENSECAG00000014308)	PRKN (ENSECAG00000004645)	AGPAT4 (ENSECAG00000001189) ##22	MAP3K4 (ENSECAG00000012724)	ENSECAG00000031093	ENSECAG00000007979	SLC22A3 (ENSECAG00000004372)	SLC22A2 (ENSECAG00000021017)	SLC22A1 (ENSECAG00000016404)	ENSECAG00000044529	IGF2R (ENSECAG00000019509)	MAS1 (ENSECAG00000028126)	PNLDC1 (ENSECAG00000012898)	MRPL18 (ENSECAG00000012515)	TCP1 (ENSECAG00000017953)	WTAP (ENSECAG00000003471)	SOD2 (ENSECAG00000011797)	FNDC1 (ENSECAG00000000239)
Donkey	MODERN SPECIES	20	ENSEASG00005027533	CCR6 (ENSEASG00005028790)	CEP43 (ENSEASG00005000363)	RNASET2 (ENSEASG00005000345)	RPS6KA2 (ENSEASG00005000339)	ENSEASG00005029716	SFT2D1 (ENSEASG00005028687)	ENSEASG00005011917	ENSEASG00005000239	TBXT (ENSEASG00005000114)	PDE10A (ENSEASG00005019729)	C6orf118 (ENSEASG00005019727)	QKI (ENSEASG00005019724)	PACRG (ENSEASG00005019723)	PRKN (ENSEASG00005019721)	ENSEASG00005019711 ##22	ENSEASG00005019709	MAP3K4 (ENSEASG00005019701)	ENSEASG00005019697	SLC22A3 (ENSEASG00005019679)	SLC22A2 (ENSEASG00005019670)	SLC22A1 (ENSEASG00005019667)	IGF2R (ENSEASG00005019232)	MAS1 (ENSEASG00005019033)	PNLDC1 (ENSEASG00005019029)	ENSEASG00005028667	TCP1 (ENSEASG00005019021)	ACAT2 (ENSEASG00005019019)	WTAP (ENSEASG00005024385)	ENSEASG00005023660	ENSEASG00005019012
Carnivora	ANCESTRAL SPECIES	4	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B
Caniformia	ANCESTRAL SPECIES	3	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00940000157912	ENSGT00940000171186	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B
Caniformia_b	ANCESTRAL SPECIES	6	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00940000157912	ENSGT00940000171186	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B
Mustelinae	ANCESTRAL SPECIES	26															ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B
American mink	MODERN SPECIES	4															ENSNVIG00000010918	AGPAT4 (ENSNVIG00000010903) ##22	ENSNVIG00000010894	MAP3K4 (ENSNVIG00000010747)	ENSNVIG00000010704	SLC22A3 (ENSNVIG00000010693)	SLC22A2 (ENSNVIG00000010662)	SLC22A1 (ENSNVIG00000010572)	IGF2R (ENSNVIG00000010447)	MAS1 (ENSNVIG00000010425)	PNLDC1 (ENSNVIG00000010375)	RM18 (ENSNVIG00000010351)	TCP1 (ENSNVIG00000010276)	ACAT2 (ENSNVIG00000010262)	WTAP (ENSNVIG00000010202)	SODM (ENSNVIG00000010142)	ENSNVIG00000010133
Ferret	MODERN SPECIES	321													ENSMPUG00000004593	ENSMPUG00000004595	ENSMPUG00000004601	AGPAT4 (ENSMPUG00000004604) ##22	MAP3K4 (ENSMPUG00000004612)	ENSMPUG00000004632	SLC22A3 (ENSMPUG00000004654)	SLC22A2 (ENSMPUG00000004670)	SLC22A1 (ENSMPUG00000004685)	IGF2R (ENSMPUG00000004888)	ENSMPUG00000019615	MAS1 (ENSMPUG00000019617)	PNLDC1 (ENSMPUG00000004920)	MRPL18 (ENSMPUG00000005009)	TCP1 (ENSMPUG00000005020)	ACAT2 (ENSMPUG00000005030)	WTAP (ENSMPUG00000005036)	SOD2 (ENSMPUG00000005045)	FNDC1 (ENSMPUG00000005104)
Ursidae	ANCESTRAL SPECIES	22	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00940000157912	ENSGT00940000171186	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000157993
Ursus	ANCESTRAL SPECIES	81	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00940000157912	ENSGT00940000171186	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00970000197976	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000157993
American black bear	MODERN SPECIES	693															ENSUAMG00000005980	AGPAT4 (ENSUAMG00000005982) ##22	MAP3K4 (ENSUAMG00000006056)	ENSUAMG00000006178	SLC22A3 (ENSUAMG00000006181)
Polar bear	MODERN SPECIES	150	MPC1 (ENSUMAG00000011553)	ENSUMAG00000011556	TBXT (ENSUMAG00000011569)	ENSUMAG00000011603	PDE10A (ENSUMAG00000011612)	C6orf118 (ENSUMAG00000011626)	ENSUMAG00000011639	QKI (ENSUMAG00000011658)	ENSUMAG00000011678	ENSUMAG00000011681	ENSUMAG00000011688	ENSUMAG00000011694	ENSUMAG00000011702	ENSUMAG00000011710	ENSUMAG00000011729	AGPAT4 (ENSUMAG00000011739) ##22	MAP3K4 (ENSUMAG00000011760)	ENSUMAG00000011793	SLC22A3 (ENSUMAG00000011813)	SLC22A2 (ENSUMAG00000011818)	SLC22A1 (ENSUMAG00000011827)	IGF2R (ENSUMAG00000011876)	MAS1 (ENSUMAG00000011898)	PNLDC1 (ENSUMAG00000011903)	MRPL18 (ENSUMAG00000011916)	TCP1 (ENSUMAG00000011924)	ACAT2 (ENSUMAG00000011942)	ENSUMAG00000011954	WTAP (ENSUMAG00000011957)	SOD2 (ENSUMAG00000011961)	FNDC1 (ENSUMAG00000011974)
Giant Panda	MODERN SPECIES	1	CCR6 (ENSAMEG00000028123)	ENSAMEG00000009406	ENSAMEG00000009382	ENSAMEG00000009376	RPS6KA2 (ENSAMEG00000009322)	MPC1 (ENSAMEG00000009318)	SFT2D1 (ENSAMEG00000009311)	TBXT (ENSAMEG00000009278)	PDE10A (ENSAMEG00000008225)	C6orf118 (ENSAMEG00000008271)	ENSAMEG00000028308	ENSAMEG00000027289	QKI (ENSAMEG00000008459)	PACRG (ENSAMEG00000008449)	PRKN (ENSAMEG00000015876)	ENSAMEG00000015885 ##22	MAP3K4 (ENSAMEG00000015908)	ENSAMEG00000015960	SLC22A3 (ENSAMEG00000015037)	SLC22A2 (ENSAMEG00000015045)	SLC22A1 (ENSAMEG00000015110)	IGF2R (ENSAMEG00000015172)	MAS1 (ENSAMEG00000019584)	PNLDC1 (ENSAMEG00000015371)	MRPL18 (ENSAMEG00000015398)	TCP1 (ENSAMEG00000015405)	ACAT2 (ENSAMEG00000015430)	WTAP (ENSAMEG00000025264)	ENSAMEG00000015466	FNDC1 (ENSAMEG00000003564)	TAGAP (ENSAMEG00000009357)
Canidae	ANCESTRAL SPECIES	34	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00940000157912	ENSGT00940000171186	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT01030000234985	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B
Canis_lupus	ANCESTRAL SPECIES		ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000003582.q.a.b.b.b	ENSGT00940000157912	ENSGT00940000171186	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT01090000260046.e.b.b.a.b.a.a.b.b.b.b.b.a.a.a.b.b	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000157993
Dog	MODERN SPECIES		ENSCAFG00845004827	CEP43 (ENSCAFG00845004808)	RNASET2 (ENSCAFG00845004774)	RPS6KA2 (ENSCAFG00845004742)	MPC1 (ENSCAFG00845004722)	SFT2D1 (ENSCAFG00845004712)	ENSCAFG00845004701	TBXT (ENSCAFG00845004679)	ENSCAFG00845004656	PDE10A (ENSCAFG00845004510)	C6orf118 (ENSCAFG00845004390)	ENSCAFG00845004368	QKI (ENSCAFG00845002617)	PACRG (ENSCAFG00845002583)	PRKN (ENSCAFG00845002459)	AGPAT4 (ENSCAFG00845002356) ##22	MAP3K4 (ENSCAFG00845002271)	PLG (ENSCAFG00845002222)	SLC22A3 (ENSCAFG00845002183)	SLC22A2 (ENSCAFG00845002163)	SLC22A1 (ENSCAFG00845002132)	IGF2R (ENSCAFG00845002089)	MAS1 (ENSCAFG00845002042)	PNLDC1 (ENSCAFG00845001998)	MRPL18 (ENSCAFG00845001976)	TCP1 (ENSCAFG00845001904)	ACAT2 (ENSCAFG00845001848)	WTAP (ENSCAFG00845001806)	SOD2 (ENSCAFG00845001754)	FNDC1 (ENSCAFG00845001542)	TAGAP (ENSCAFG00845001461)
Dingo	MODERN SPECIES	125	TBXT (ENSCAFG00020019286)	ENSCAFG00020019285	ENSCAFG00020019279	PDE10A (ENSCAFG00020019197)	C6orf118 (ENSCAFG00020019164)	ENSCAFG00020019148	ENSCAFG00020019146	ENSCAFG00020019125	ENSCAFG00020019102	QKI (ENSCAFG00020019085)	ENSCAFG00020019027	ENSCAFG00020018978	ENSCAFG00020018975	ENSCAFG00020018908	ENSCAFG00020018877	AGPAT4 (ENSCAFG00020018873) ##22	MAP3K4 (ENSCAFG00020018821)	ENSCAFG00020018797	SLC22A3 (ENSCAFG00020018716)	ENSCAFG00020018703	SLC22A2 (ENSCAFG00020018701)	ENSCAFG00020018698	IGF2R (ENSCAFG00020017822)	MAS1 (ENSCAFG00020017759)	PNLDC1 (ENSCAFG00020017742)	MRPL18 (ENSCAFG00020017736)	TCP1 (ENSCAFG00020017729)	ACAT2 (ENSCAFG00020017725)	WTAP (ENSCAFG00020017718)	SOD2 (ENSCAFG00020017714)	FNDC1 (ENSCAFG00020017707)
Red fox	MODERN SPECIES	119	RNASET2 (ENSVVUG00000021691)	RPS6KA2 (ENSVVUG00000021694)	MPC1 (ENSVVUG00000021696)	SFT2D1 (ENSVVUG00000021697)	TBXT (ENSVVUG00000021698)	ENSVVUG00000021701	PDE10A (ENSVVUG00000001300)	CUNH6orf118 (ENSVVUG00000001400)	ENSVVUG00000001421	QKI (ENSVVUG00000001467)	ENSVVUG00000001516	ENSVVUG00000001531	ENSVVUG00000001546	ENSVVUG00000001570	ENSVVUG00000001590	AGPAT4 (ENSVVUG00000001618) ##22	MAP3K4 (ENSVVUG00000001652)	ENSVVUG00000001770	PLG (ENSVVUG00000001801)	SLC22A3 (ENSVVUG00000001828)
Felidae	ANCESTRAL SPECIES	5	ENSGT00530000063359.A	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT01030000234985	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B
Panthera	ANCESTRAL SPECIES	7	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000157993.n
Panthera_a	ANCESTRAL SPECIES	4	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000157993.n
lion	MODERN SPECIES	5	AFDN (ENSPLOG00000004692)	UNC93A (ENSPLOG00000004674)	GPR31 (ENSPLOG00000004665)	CCR6 (ENSPLOG00000004660)	CEP43 (ENSPLOG00000004651)	ENSPLOG00000004632	RPS6KA2 (ENSPLOG00000004555)	MPC1 (ENSPLOG00000004524)	SFT2D1 (ENSPLOG00000004514)	TBXT (ENSPLOG00000004499)	PDE10A (ENSPLOG00000004454)	C6orf118 (ENSPLOG00000004379)	QKI (ENSPLOG00000004330)	PACRG (ENSPLOG00000004324)	PRKN (ENSPLOG00000004285)	AGPAT4 (ENSPLOG00000004245) ##22	MAP3K4 (ENSPLOG00000004139)	ENSPLOG00000004087	ENSPLOG00000004079	ENSPLOG00000004061	SLC22A3 (ENSPLOG00000004048)	SLC22A2 (ENSPLOG00000004027)	SLC22A1 (ENSPLOG00000004002)	IGF2R (ENSPLOG00000003880)	MAS1 (ENSPLOG00000003857)	PNLDC1 (ENSPLOG00000003816)	MRPL18 (ENSPLOG00000003790)	TCP1 (ENSPLOG00000003746)	ACAT2 (ENSPLOG00000003718)	WTAP (ENSPLOG00000003697)	SOD2 (ENSPLOG00000003669)
leopard	MODERN SPECIES	59	UNC93A (ENSPPRG00000001893)	GPR31 (ENSPPRG00000014821)	CCR6 (ENSPPRG00000002424)	CEP43 (ENSPPRG00000004055)	ENSPPRG00000004367	RNASET2 (ENSPPRG00000005136)	RPS6KA2 (ENSPPRG00000007163)	MPC1 (ENSPPRG00000007955)	SFT2D1 (ENSPPRG00000008072)	TBXT (ENSPPRG00000008721)	PDE10A (ENSPPRG00000012201)	C6orf118 (ENSPPRG00000012423)	QKI (ENSPPRG00000013383)	PACRG (ENSPPRG00000018305)	PRKN (ENSPPRG00000002801)	AGPAT4 (ENSPPRG00000003125) ##22	MAP3K4 (ENSPPRG00000007372)	ENSPPRG00000007637	SLC22A3 (ENSPPRG00000007817)	SLC22A2 (ENSPPRG00000008200)	SLC22A1 (ENSPPRG00000009083)	IGF2R (ENSPPRG00000010975)	MAS1 (ENSPPRG00000016120)	PNLDC1 (ENSPPRG00000012854)	MRPL18 (ENSPPRG00000013063)	TCP1 (ENSPPRG00000014032)	ACAT2 (ENSPPRG00000014607)	WTAP (ENSPPRG00000016764)	SOD2 (ENSPPRG00000019418)	ENSPPRG00000000588	RSPH3 (ENSPPRG00000001447)
Tiger	MODERN SPECIES	551	UNC93A (ENSPTIG00000017005)	CCR6 (ENSPTIG00000015495)	CEP43 (ENSPTIG00000011871)	RNASET2 (ENSPTIG00000010220)	RPS6KA2 (ENSPTIG00000021230)	MPC1 (ENSPTIG00000020905)	SFT2D1 (ENSPTIG00000019417)	TBXT (ENSPTIG00000017818)	PDE10A (ENSPTIG00000013592)	C6orf118 (ENSPTIG00000012856)	QKI (ENSPTIG00000008797)	ENSPTIG00000002521	ENSPTIG00000007481	PACRG (ENSPTIG00000004368)	PRKN (ENSPTIG00000021925)	AGPAT4 (ENSPTIG00000021603) ##22	MAP3K4 (ENSPTIG00000017590)	ENSPTIG00000010411	SLC22A3 (ENSPTIG00000008644)	SLC22A2 (ENSPTIG00000006985)	SLC22A1 (ENSPTIG00000019426)	IGF2R (ENSPTIG00000015202)	ENSPTIG00000014351	MAS1 (ENSPTIG00000001177)	PNLDC1 (ENSPTIG00000011501)	MRPL18 (ENSPTIG00000010107)	TCP1 (ENSPTIG00000007384)	ACAT2 (ENSPTIG00000006762)	WTAP (ENSPTIG00000004824)	SOD2 (ENSPTIG00000018855)	ENSPTIG00000014899
Cat	MODERN SPECIES	236	GPR31 (ENSFCAG00000044243)	CCR6 (ENSFCAG00000046616)	CEP43 (ENSFCAG00000005106)	RNASET2 (ENSFCAG00000031545)	RPS6KA2 (ENSFCAG00000005103)	MPC1 (ENSFCAG00000038385)	SFT2D1 (ENSFCAG00000033223)	ENSFCAG00000051868	TBXT (ENSFCAG00000000777)	PDE10A (ENSFCAG00000012867)	CB2H6orf118 (ENSFCAG00000045037)	QKI (ENSFCAG00000019399)	PACRG (ENSFCAG00000028010)	ENSFCAG00000034013	PRKN (ENSFCAG00000038081)	AGPAT4 (ENSFCAG00000000357) ##22	ENSFCAG00000038094	MAP3K4 (ENSFCAG00000000356)	PLG (ENSFCAG00000023975)	SLC22A3 (ENSFCAG00000000355)	SLC22A2 (ENSFCAG00000002852)	SLC22A1 (ENSFCAG00000002851)	IGF2R (ENSFCAG00000002850)	MAS1 (ENSFCAG00000002849)	PNLDC1 (ENSFCAG00000002848)	MRPL18 (ENSFCAG00000002847)	TCP1 (ENSFCAG00000002846)	ACAT2 (ENSFCAG00000002845)	WTAP (ENSFCAG00000002844)	SOD2 (ENSFCAG00000002843)	FNDC1 (ENSFCAG00000022317)
Atlantogenata	ANCESTRAL SPECIES	96	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00690000103860	ENSGT00940000157912	ENSGT00420000030417	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00940000168329	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000157993
Afrotheria	ANCESTRAL SPECIES	113	ENSGT00940000162166	ENSGT00940000155237	ENSGT00940000162752	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00940000168329	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000157993
Afrotheria_a	ANCESTRAL SPECIES	116	ENSGT00940000162166	ENSGT00940000155237	ENSGT00940000162752	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00940000168329	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.b.b	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000157993
Elephant	MODERN SPECIES	520	TTLL2 (ENSLAFG00000011626)	GPR31 (ENSLAFG00000022903)	CCR6 (ENSLAFG00000020827)	CEP43 (ENSLAFG00000008016)	RNASET2 (ENSLAFG00000003359)	RPS6KA2 (ENSLAFG00000027838)	MPC1 (ENSLAFG00000025901)	ENSLAFG00000027160	TBXT (ENSLAFG00000012505)	ENSLAFG00000001674	C6orf118 (ENSLAFG00000001672)	QKI (ENSLAFG00000021654)	PACRG (ENSLAFG00000002732)	ENSLAFG00000003358	ENSLAFG00000031170	AGPAT4 (ENSLAFG00000021414) ##22	MAP3K4 (ENSLAFG00000012768)	ENSLAFG00000004237	SLC22A3 (ENSLAFG00000005825)	SLC22A2 (ENSLAFG00000011288)	SLC22A1 (ENSLAFG00000011681)	IGF2R (ENSLAFG00000017191)	MAS1 (ENSLAFG00000001539)	PNLDC1 (ENSLAFG00000030189)	MRPL18 (ENSLAFG00000002501)	TCP1 (ENSLAFG00000007909)	ACAT2 (ENSLAFG00000007904)	WTAP (ENSLAFG00000007335)	SOD2 (ENSLAFG00000007331)	ENSLAFG00000022877	TAGAP (ENSLAFG00000026460)
Hyrax	MODERN SPECIES	7621																ENSPCAG00000002038 ##22	MAP3K4 (ENSPCAG00000001937)
Tenrec	MODERN SPECIES	6870																AGPAT4 (ENSETEG00000011059) ##22
Xenarthra	ANCESTRAL SPECIES	318															ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00390000013931.a.b.b	ENSGT00390000011877
Armadillo	MODERN SPECIES	652														ENSDNOG00000043706	ENSDNOG00000037179	AGPAT4 (ENSDNOG00000047534) ##22	MAP3K4 (ENSDNOG00000007023)	ENSDNOG00000041736	SLC22A3 (ENSDNOG00000015801)	SLC22A2 (ENSDNOG00000016557)	SLC22A1 (ENSDNOG00000036200)	IGF2R (ENSDNOG00000000201)	MAS1 (ENSDNOG00000006126)	ENSDNOG00000044887	ENSDNOG00000037005	PNLDC1 (ENSDNOG00000013709)	MRPL18 (ENSDNOG00000036148)	ENSDNOG00000049693	SOD2 (ENSDNOG00000040082)
Marsupialia	ANCESTRAL SPECIES	2	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00940000168329	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT01030000234985	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a.ab	ENSGT01030000234639.A.a.`b.a.b	ENSGT01030000234639.A.a.`b.a.a.b	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.a
Marsupialia_b	ANCESTRAL SPECIES	1	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b	ENSGT00390000007441	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00940000168329	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT01030000234985	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a.ab	ENSGT01030000234639.A.a.`b.a.b	ENSGT01030000234639.A.a.`b.a.a.b	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.a
Diprotodontia	ANCESTRAL SPECIES	15												ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00940000168329	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a.ab	ENSGT01030000234639.A.a.`b.a.a.b	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.a	ENSGT00390000011877	ENSGT00530000063558.B
Diprotodontia_a	ANCESTRAL SPECIES	43												ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00940000168329	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810	ENSGT00940000155089	ENSGT00940000162065	ENSGT00390000013943	ENSGT01030000234639.A.a.ab	ENSGT01030000234639.A.a.`b.a.a.b	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931.a.a	ENSGT00390000011877	ENSGT00530000063558.B
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1190	ENSVURG00010018440	ENSVURG00010018398	ENSVURG00010018380	ENSVURG00010018374	ENSVURG00010018366	ENSVURG00010018363	ENSVURG00010018358	ENSVURG00010018354	ENSVURG00010018341	ENSVURG00010018331	ENSVURG00010018324	ENSVURG00010018319	ENSVURG00010018316	ENSVURG00010018308	ENSVURG00010018305	ENSVURG00010018293 ##22	ENSVURG00010018264	ENSVURG00010018243	ENSVURG00010018231	ENSVURG00010018225	ENSVURG00010018160	ENSVURG00010018143	ENSVURG00010018103	ENSVURG00010018091	ENSVURG00010018086	ENSVURG00010018079	ENSVURG00010018062	ENSVURG00010018050	ENSVURG00010018037	ENSVURG00010018030	ENSVURG00010017990
Common wonbat	MODERN SPECIES	1190								ENSVURG00010019252	ENSVURG00010019245	ENSVURG00010019237	ENSVURG00010019227	ENSVURG00010019224	ENSVURG00010019222	ENSVURG00010019218	ENSVURG00010019215	ENSVURG00010019211 ##22	ENSVURG00010019181	ENSVURG00010019170	ENSVURG00010019160	ENSVURG00010019143	ENSVURG00010019132	ENSVURG00010019080	ENSVURG00010019063	ENSVURG00010019059	ENSVURG00010019052	ENSVURG00010019037	ENSVURG00010019031	ENSVURG00010019020	ENSVURG00010019015	ENSVURG00010019008	ENSVURG00010019003
koala	MODERN SPECIES	25									QKI (ENSPCIG00000020191)	ENSPCIG00000031508	ENSPCIG00000034977	ENSPCIG00000006522	ENSPCIG00000006520	ENSPCIG00000022936	ENSPCIG00000019683	AGPAT4 (ENSPCIG00000019684) ##22	MAP3K4 (ENSPCIG00000019688)	ENSPCIG00000019697	SLC22A3 (ENSPCIG00000019698)	SLC22A2 (ENSPCIG00000004270)	SLC22A1 (ENSPCIG00000019702)	IGF2R (ENSPCIG00000019709)	MAS1 (ENSPCIG00000019932)	ENSPCIG00000007796	PNLDC1 (ENSPCIG00000023412)	MRPL18 (ENSPCIG00000003362)	TCP1 (ENSPCIG00000029421)	ACAT2 (ENSPCIG00000029405)	ENSPCIG00000029403	SOD2 (ENSPCIG00000029402)	FNDC1 (ENSPCIG00000029395)
Wallaby	MODERN SPECIES	490																AGPAT4 (ENSMEUG00000004334) ##22
Tasmanian devil	MODERN SPECIES	3	ENSSHAG00000013247	ENSSHAG00000021292	CCR6 (ENSSHAG00000012662)	CEP43 (ENSSHAG00000011825)	RNASET2 (ENSSHAG00000011073)	RPS6KA2 (ENSSHAG00000006398)	ENSSHAG00000022097	SFT2D1 (ENSSHAG00000027257)	ENSSHAG00000025239	TBXT (ENSSHAG00000018904)	ENSSHAG00000024973	PDE10A (ENSSHAG00000018469)	ENSSHAG00000018375	QKI (ENSSHAG00000028391)	PACRG (ENSSHAG00000024668)	AGPAT4 (ENSSHAG00000005957) ##22	ENSSHAG00000029251	ENSSHAG00000025577	ENSSHAG00000004375	ENSSHAG00000021967	ENSSHAG00000000112	SLC22A3 (ENSSHAG00000016633)	SLC22A2 (ENSSHAG00000016344)	SLC22A1 (ENSSHAG00000016135)	IGF2R (ENSSHAG00000015828)	MAS1 (ENSSHAG00000001441)	ENSSHAG00000022705	ENSSHAG00000026410	ENSSHAG00000031794	PNLDC1 (ENSSHAG00000015192)	TCP1 (ENSSHAG00000002185)
Opossum	MODERN SPECIES	1	SFT2D1 (ENSMODG00000025689)	TBXT (ENSMODG00000006318)	ENSMODG00000006322	PDE10A (ENSMODG00000006355)	ENSMODG00000006367	QKI (ENSMODG00000006434)	ENSMODG00000049428	ENSMODG00000023273	ENSMODG00000040616	ENSMODG00000047373	ENSMODG00000043631	ENSMODG00000023274	ENSMODG00000006493	ENSMODG00000029680	ENSMODG00000027665	AGPAT4 (ENSMODG00000006531) ##22	MAP3K4 (ENSMODG00000006594)	ENSMODG00000006692	SLC22A3 (ENSMODG00000006771)	SLC22A2 (ENSMODG00000006806)	SLC22A1 (ENSMODG00000006918)	IGF2R (ENSMODG00000007100)	ENSMODG00000048306	MAS1 (ENSMODG00000007377)	ENSMODG00000023275	ENSMODG00000007388	PNLDC1 (ENSMODG00000007420)	MRPL18 (ENSMODG00000007428)	TCP1 (ENSMODG00000007478)	ACAT2 (ENSMODG00000007156)	ENSMODG00000045208
Anura	ANCESTRAL SPECIES	240								ENSGT00390000018525.a.a	ENSGT00390000002164	ENSGT00940000157912	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000163882.a.a	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155208	ENSGT00940000160810
Leishan spiny toad	MODERN SPECIES	7	ENSLLEG00000013843	ENSLLEG00000014174	ENSLLEG00000014215	TAAR1 (ENSLLEG00000014417)	ENSLLEG00000014439	ENSLLEG00000014454	ENSLLEG00000014505	ENSLLEG00000014525	ENSLLEG00000014550	STX7 (ENSLLEG00000014610)	MOXD1 (ENSLLEG00000014697)	QKI (ENSLLEG00000014886)	ENSLLEG00000015474	ENSLLEG00000015527	ENSLLEG00000015637	ENSLLEG00000015794 ##22	MAP3K4 (ENSLLEG00000015990)	ENSLLEG00000016901	ENSLLEG00000017052	ENSLLEG00000017118	SLC22A3 (ENSLLEG00000018138)	ENSLLEG00000018342	NUP43 (ENSLLEG00000018391)	LATS1 (ENSLLEG00000018651)	KATNA1 (ENSLLEG00000018727)	GINM1 (ENSLLEG00000019103)	PPIL4 (ENSLLEG00000019229)	TAB2 (ENSLLEG00000019418)	UST (ENSLLEG00000014517)	ENSLLEG00000014629	ENSLLEG00000014695
Frog	MODERN SPECIES	5	cebpz (ENSXETG00000000654)	rps6ka2 (ENSXETG00000025994)	trim50 (ENSXETG00000041526)	mpc1 (ENSXETG00000025990)	ENSXETG00000036896	sft2d1 (ENSXETG00000026578)	PRR18 (ENSXETG00000037784)	tbxt (ENSXETG00000026572)	ENSXETG00000042559	pde10a (ENSXETG00000005369)	c6orf118 (ENSXETG00000005368)	ENSXETG00000005367	qki (ENSXETG00000015705)	pacrg (ENSXETG00000010781)	ENSXETG00000047260	agpat4 (ENSXETG00000013131) ##22	scaf8 (ENSXETG00000013132)	cnksr3 (ENSXETG00000023302)	unc93a.1 (ENSXETG00000044848)	afdn (ENSXETG00000023305)	XB22065091 [provisional:unc93a] (ENSXETG00000034497)	capn9 (ENSXETG00000023310)	taf5l (ENSXETG00000023330)	urb2 (ENSXETG00000023331)	galnt2 (ENSXETG00000023332)	pgbd5 (ENSXETG00000023336)	pdgfrl.2 (ENSXETG00000023338)	pigh (ENSXETG00000032968)	cog2 (ENSXETG00000023340)	ENSXETG00000045614	tmem181 (ENSXETG00000023341)
Actinopterygii	ANCESTRAL SPECIES	33	ENSGT00940000157057	ENSGT00640000091563.a	ENSGT00940000159956	ENSGT00510000046988	ENSGT00530000064569.b	ENSGT00530000064569.a	ENSGT00390000018525.a.a	ENSGT00390000002164.a	ENSGT00940000157912	ENSGT00420000030417	ENSGT00940000156543	ENSGT00390000009877	ENSGT00940000155310.a.b	ENSGT01030000236263	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00390000003939
Neopterygii	ANCESTRAL SPECIES	3	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.C.b.a	ENSGT00940000158952	ENSGT00940000163749	ENSGT00940000154292.a.b	ENSGT00940000177029	ENSGT00940000159080	ENSGT00390000003855.a	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433	ENSGT00390000012017	ENSGT00940000157846	ENSGT00950000182836.b.b.b.b ##22	ENSGT00880000138034	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00390000003939	ENSGT00940000162787	ENSGT00950000183181.A.a	ENSGT00390000018436.a.b
Osteoglossocephalai	ANCESTRAL SPECIES	31	ENSGT00940000176000	ENSGT00940000158952	ENSGT00940000163749	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000154292.a.b	ENSGT00940000177029.b	ENSGT00940000177029.a.b	ENSGT00940000159080	ENSGT00390000003855.a	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00940000165701	ENSGT00900000143203	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00950000183181.A.a	ENSGT00390000000411	ENSGT00390000018436.a.b
Clupeocephala	ANCESTRAL SPECIES	47	ENSGT00730000111139	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000154292.a.b	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00990000204854	ENSGT00940000165701	ENSGT00900000143203	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158302.d.a	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00950000183136.b.a.a
Otomorpha	ANCESTRAL SPECIES	67														ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00390000008727.a.a.d.j	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158302.d.a	ENSGT00940000159308	ENSGT00940000179915	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00950000183136.b.a.a	ENSGT00940000163741	ENSGT00940000160615.a.b
Clupeiformes	ANCESTRAL SPECIES	138														ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00990000204854	ENSGT00940000165701	ENSGT00390000008727.a.a.d.j	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00950000183136.b.a.a	ENSGT00940000165329	ENSGT00940000155080	ENSGT00950000183045.A.a.b	ENSGT00940000157134
Denticle herring	MODERN SPECIES	18	pdlim1 (ENSDCDG00000029959)	neurog3 (ENSDCDG00000029958)	sgpl1 (ENSDCDG00000029583)	pcbd1 (ENSDCDG00000029543)	ENSDCDG00000029537	ret (ENSDCDG00000029480)	ENSDCDG00000029471	bag2 (ENSDCDG00000029470)	rab23 (ENSDCDG00000029469)	prim2 (ENSDCDG00000029451)	khdrbs2 (ENSDCDG00000029444)	ENSDCDG00000029443	ENSDCDG00000029441	ENSDCDG00000029433	THBS2 (ENSDCDG00000026108)	agpat4 (ENSDCDG00000026056) ##22	ENSDCDG00000022901	kcnk1b (ENSDCDG00000022861)	SLC35F3 (ENSDCDG00000022850)	TARBP1 (ENSDCDG00000022839)	zgc:172136 (ENSDCDG00000022833)	ENSDCDG00000022830	ENSDCDG00000022827	ENSDCDG00000022824	smc2 (ENSDCDG00000022793)	exoc1l (ENSDCDG00000022783)	ppp1r21 (ENSDCDG00000022775)	STON1 (ENSDCDG00000022768)	gtf2a1l (ENSDCDG00000022763)	LHCGR (ENSDCDG00000022642)	nrxn1b (ENSDCDG00000017362)
Atlantic herring	MODERN SPECIES	4	ENSCHAG00000018968	ENSCHAG00000018924	ENSCHAG00000018917	ENSCHAG00000018901	ENSCHAG00000018893	KLHDC3 (ENSCHAG00000018840)	ntpcr (ENSCHAG00000018718)	ENSCHAG00000018713	SIPA1L2 (ENSCHAG00000018366)	disc1 (ENSCHAG00000018320)	tsnax (ENSCHAG00000018291)	EGLN1 (ENSCHAG00000018286)	las1l (ENSCHAG00000018125)	ENSCHAG00000018089	THBS2 (ENSCHAG00000014817)	agpat4 (ENSCHAG00000014770) ##22	ENSCHAG00000014747	ENSCHAG00000011519	kcnk1b (ENSCHAG00000011473)	ENSCHAG00000011465	SLC35F3 (ENSCHAG00000011448)	TARBP1 (ENSCHAG00000011158)	zgc:172136 (ENSCHAG00000011137)	fam135a (ENSCHAG00000010730)	ENSCHAG00000010430	ENSCHAG00000010410	lmbrd1 (ENSCHAG00000009648)	ADGRB3 (ENSCHAG00000007746)	zgc:171579 (ENSCHAG00000007666)	ENSCHAG00000007565	ENSCHAG00000007525
Otophysi	ANCESTRAL SPECIES	290													ENSGT00390000008727.a.a.d.j	ENSGT00940000166602.B	ENSGT00390000003939.d	ENSGT00950000182836.b.b.b.b ##22	ENSGT00390000003939.c	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158302.d.a	ENSGT00940000159308	ENSGT00940000159722	ENSGT00950000183015.E	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00950000183136.b.a.a	ENSGT00940000163741	ENSGT00940000160615.a.b	ENSGT00940000155080
Characiphysae	ANCESTRAL SPECIES	184																ENSGT00950000182836.b.b.b.b ##22	ENSGT00990000204854	ENSGT00940000165701	ENSGT00390000008727.a.a.d.j	ENSGT00940000166602.B	ENSGT00390000003939.c	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158302.d.a	ENSGT00940000159308	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00950000183136.b.a.a	ENSGT00940000163741
Channel catfish	MODERN SPECIES	21	fam135a (ENSIPUG00000006232)	col9a1b (ENSIPUG00000006205)	ENSIPUG00000006133	ENSIPUG00000006037	ENSIPUG00000006013	lmbrd1 (ENSIPUG00000005952)	ENSIPUG00000005945	ENSIPUG00000005931	adgrb3 (ENSIPUG00000005725)	ENSIPUG00000005703	ENSIPUG00000005689	ENSIPUG00000005673	ENSIPUG00000005652	phf3 (ENSIPUG00000005640)	ENSIPUG00000005623	agpat4 (ENSIPUG00000005567) ##22	ENSIPUG00000005543	map3k4 (ENSIPUG00000005397)	ENSIPUG00000005363	ENSIPUG00000005249	gsg2 (ENSIPUG00000005225)	ENSIPUG00000005213	fam184b (ENSIPUG00000005146)	ENSIPUG00000005124	tasp1 (ENSIPUG00000005087)	memo1 (ENSIPUG00000005003)	ENSIPUG00000004914	cntnap2a (ENSIPUG00000004904)	clrn2 (ENSIPUG00000004899)	kitb (ENSIPUG00000004870)	clockb (ENSIPUG00000004843)
Characiphysae_b	ANCESTRAL SPECIES	28													ENSGT00530000063669.a	ENSGT00990000210864	ENSGT00390000013015	ENSGT00950000182836.b.b.b.b ##22	ENSGT00990000204854	ENSGT00940000165701	ENSGT00390000008727.a.a.d.j	ENSGT00940000166602.B	ENSGT00390000003939.c	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158302.d.a	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00940000162809	ENSGT00950000183136.b.a.a	ENSGT00940000163741
Characoidei	ANCESTRAL SPECIES	243															ENSGT00390000013015	ENSGT00950000182836.b.b.b.b ##22	ENSGT00990000204854	ENSGT00940000165701	ENSGT00390000008727.a.a.d.j	ENSGT00940000166602.B	ENSGT00390000003939.c	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158302.d.a	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00950000183136.b.a.a	ENSGT00940000163741	ENSGT00940000160615.a.b
Red-bellied piranha	MODERN SPECIES	1344															ENSPNAG00000000137	agpat4 (ENSPNAG00000007350) ##22	ENSPNAG00000007351	ENSPNAG00000000138
Mexicana tetra	MODERN SPECIES	13	clrn2 (ENSAMXG00000037433)	ENSAMXG00000036145	ENSAMXG00000036980	btr12 (ENSAMXG00000038643)	ENSAMXG00000032084	znf219 (ENSAMXG00000018227)	ENSAMXG00000018215	exoc1l (ENSAMXG00000033109)	smc2 (ENSAMXG00000008142)	ecpas (ENSAMXG00000018201)	FBXO10 (ENSAMXG00000018193)	polr1e (ENSAMXG00000018181)	tmem192 (ENSAMXG00000030933)	apela (ENSAMXG00000035843)	ENSAMXG00000042812	agpat4 (ENSAMXG00000018114) ##22	ENSAMXG00000018100	kcnk1b (ENSAMXG00000042820)	SLC35F3 (ENSAMXG00000031229)	ENSAMXG00000034261	ENSAMXG00000018028	zgc:172136 (ENSAMXG00000036110)	fam135a (ENSAMXG00000035633)	col9a1b (ENSAMXG00000009370)	ENSAMXG00000009334	ENSAMXG00000032856	ENSAMXG00000009317	lmbrd1 (ENSAMXG00000030194)	ADGRB3 (ENSAMXG00000009253)	zgc:171579 (ENSAMXG00000024891)	ENSAMXG00000009251
Electric eel	MODERN SPECIES	262						ENSEEEG00000024188	ENSEEEG00000024187	sfrp2 (ENSEEEG00000024186)	arfip1 (ENSEEEG00000024185)	FHDC1 (ENSEEEG00000024184)	ENSEEEG00000024183	ENSEEEG00000024182	ENSEEEG00000024181	ENSEEEG00000024178	ENSEEEG00000024175	agpat4 (ENSEEEG00000024172) ##22	ENSEEEG00000024170	ENSEEEG00000024112	kcnk1b (ENSEEEG00000024098)	SLC35F3 (ENSEEEG00000024097)	ENSEEEG00000024096	TARBP1 (ENSEEEG00000024095)	zgc:172136 (ENSEEEG00000024094)	fam135a (ENSEEEG00000024089)	ENSEEEG00000024084	ENSEEEG00000024081	lmbrd1 (ENSEEEG00000024058)
Cyprinoidei	ANCESTRAL SPECIES	38	ENSGT00950000183045.B	ENSGT00940000159062	ENSGT00940000158513	ENSGT00940000156461	ENSGT00940000166212	ENSGT00390000016400	ENSGT00390000007214	ENSGT00950000182886.b.a.a	ENSGT00390000006408	ENSGT00390000012017.f	ENSGT00390000012017.e	ENSGT00940000157846.c	ENSGT00390000011433.s.a	ENSGT00390000007723	ENSGT00530000063603.B	ENSGT00950000182836.b.b.b.b ##22	ENSGT00940000165701	ENSGT00990000204854	ENSGT00940000158858	ENSGT00940000158613.l	ENSGT00390000005318.b.b.b.a	ENSGT01030000234567.A.a.a.a.a.a	ENSGT00940000154641.B.b	ENSGT01100000263652	ENSGT00940000154782.d	ENSGT00940000157417	ENSGT00390000017666	ENSGT00940000161472	ENSGT00940000158243	ENSGT00940000157547	ENSGT00520000055955
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	86	ENSGT00940000157404.d	ENSGT00950000183045.B.j	ENSGT00940000159062.c.b	ENSGT00940000158513.p	ENSGT00940000156461.h	ENSGT00940000166212.s.b	ENSGT00390000016400.c	ENSGT00390000007214.a	ENSGT00950000182886.b.a.a.b	ENSGT00390000006408.yb	ENSGT00390000012017.e.b	ENSGT00940000157846.c.a.a	ENSGT00390000011433.s.a.b	ENSGT00390000007723.e	ENSGT00530000063603.B.c	ENSGT00950000182836.b.b.b.b.c ##22	ENSGT00940000165701.i	ENSGT00940000155293.a.a.p.b	ENSGT00940000158858.s	ENSGT00940000158613.l.d	ENSGT00390000005318.b.b.b.a.c	ENSGT00940000154641.B.b.j	ENSGT01100000263652.a	ENSGT00940000154782.d.j.b	ENSGT00940000157417.h	ENSGT00390000017666.d	ENSGT00940000161472.f	ENSGT00940000158243.e	ENSGT00940000157547.f	ENSGT00520000055955.l	ENSGT00940000155548.db
Goldfish	MODERN SPECIES	4	macrod2 (ENSCARG00000017197)	tasp1 (ENSCARG00000016866)	ism1 (ENSCARG00000016848)	sptlc3 (ENSCARG00000016473)	BTBD3 (ENSCARG00000016457)	ENSCARG00000016449	jag1b (ENSCARG00000015951)	slx4ip (ENSCARG00000015887)	mkks (ENSCARG00000015881)	srd5a2b (ENSCARG00000015876)	memo1 (ENSCARG00000015855)	ENSCARG00000015827	THBS2 (ENSCARG00000015197)	PSME4 (ENSCARG00000013923)	GPR75 (ENSCARG00000013856)	agpat4 (ENSCARG00000013845) ##22	ENSCARG00000009930	ENSCARG00000009828	kcnk1b (ENSCARG00000009825)	tacc3 (ENSCARG00000009814)	mycla (ENSCARG00000009810)	ENSCARG00000009805	mfsd2aa (ENSCARG00000009759)	ENSCARG00000009746	ENSCARG00000009738	lgmn (ENSCARG00000008988)	PCNX1 (ENSCARG00000007190)	med6 (ENSCARG00000007037)	TTC9 (ENSCARG00000007024)	MAP3K9 (ENSCARG00000006874)	slc8a3 (ENSCARG00000006857)
Cyprininae_a	ANCESTRAL SPECIES	29	ENSGT00940000157404.d	ENSGT00950000183045.B.j	ENSGT00940000159062.c.b	ENSGT00940000158513.p	ENSGT00940000156461.h	ENSGT00940000166212.s.b	ENSGT00390000016400.c	ENSGT00390000007214.a	ENSGT00950000182886.b.a.a.b	ENSGT00390000006408.yb	ENSGT00390000012017.e.b	ENSGT00940000157846.c.a.a	ENSGT00390000011433.s.a.b	ENSGT00390000007723.e	ENSGT00530000063603.B.c	ENSGT00950000182836.b.b.b.b.c ##22	ENSGT00940000165701.i	ENSGT00990000204854	ENSGT00940000155293.a.a.p.b	ENSGT00940000158858.s	ENSGT00940000158613.l.d	ENSGT00390000005318.b.b.b.a.c	ENSGT00940000154641.B.b.j	ENSGT01100000263652.a	ENSGT00940000154782.d.j.b	ENSGT00940000157417.h	ENSGT00390000017666.d	ENSGT00940000161472.f	ENSGT00940000158243.e	ENSGT00940000157547.f	ENSGT00520000055955.l
Common carp reference	MODERN SPECIES	18	ENSCCRG00000075666	tasp1 (ENSCCRG00000024736)	ism1 (ENSCCRG00000021140)	sptlc3 (ENSCCRG00000070477)	BTBD3 (ENSCCRG00000074403)	jag1b (ENSCCRG00000018272)	slx4ip (ENSCCRG00000078555)	mkks (ENSCCRG00000023678)	srd5a2b (ENSCCRG00000026771)	memo1 (ENSCCRG00000026739)	ENSCCRG00000026727	ENSCCRG00000015527	PSME4 (ENSCCRG00000008833)	ENSCCRG00000056325	erlec1 (ENSCCRG00000008121)	agpat4 (ENSCCRG00000034628) ##22	ENSCCRG00000005260	ENSCCRG00000008074	kcnk1b (ENSCCRG00000073880)	tacc3 (ENSCCRG00000008042)	mycla (ENSCCRG00000008035)	mfsd2aa (ENSCCRG00000058850)	ENSCCRG00000064178	ENSCCRG00000016246	lgmn (ENSCCRG00000056806)	ENSCCRG00000047270	med6 (ENSCCRG00000040658)	ENSCCRG00000067299	MAP3K9 (ENSCCRG00000048471)	slc8a3 (ENSCCRG00000048481)	cox16 (ENSCCRG00000062223)
Golden-line barbel	MODERN SPECIES	465												ENSSGRG00000048827	PSME4 (ENSSGRG00000048843)	GPR75 (ENSSGRG00000048862)	erlec1 (ENSSGRG00000048869)	agpat4 (ENSSGRG00000049077) ##22	ENSSGRG00000049100	ENSSGRG00000049326	kcnk1b (ENSSGRG00000049330)	tacc3 (ENSSGRG00000049339)	mycla (ENSSGRG00000049342)	mfsd2aa (ENSSGRG00000049343)	zgc:153911 (ENSSGRG00000049344)	ENSSGRG00000049345	lgmn (ENSSGRG00000049371)	PCNX1 (ENSSGRG00000049938)	med6 (ENSSGRG00000049942)	TTC9 (ENSSGRG00000049997)	MAP3K9 (ENSSGRG00000050001)	slc8a3 (ENSSGRG00000050017)	cox16 (ENSSGRG00000050020)
Cyprininae	ANCESTRAL SPECIES	4	ENSGT00940000162838.g.b	ENSGT00950000183045.B.i	ENSGT00940000159062.c.a	ENSGT00940000158513.o	ENSGT00940000156461.g	ENSGT00940000166212.s.a	ENSGT00390000016400.d	ENSGT00390000007214.b	ENSGT00950000182886.b.a.a.a	ENSGT00390000006408.`c	ENSGT00390000012017.e.a	ENSGT00940000157846.c.a.b	ENSGT00390000011433.s.a.a	ENSGT00390000007723.f	ENSGT00530000063603.B.d	ENSGT00950000182836.b.b.b.b.d ##22	ENSGT00940000165701.j	ENSGT00990000204854	ENSGT00940000155293.a.a.p.a	ENSGT00940000158858.t	ENSGT00940000158613.l.c	ENSGT00390000005318.b.b.b.a.d	ENSGT01030000234567.A.a.a.a.a.a	ENSGT00940000154641.B.b.i	ENSGT01100000263652.b	ENSGT00940000154782.d.j.a	ENSGT00940000157417.g	ENSGT00390000017666.c	ENSGT00940000161472.e	ENSGT00940000158243.f	ENSGT00940000157547.e
Goldfish	MODERN SPECIES	31	KIF16B (ENSCARG00000049616)	tasp1 (ENSCARG00000049659)	ism1 (ENSCARG00000050343)	sptlc3 (ENSCARG00000050374)	BTBD3 (ENSCARG00000050841)	jag1b (ENSCARG00000050888)	slx4ip (ENSCARG00000051581)	mkks (ENSCARG00000051601)	srd5a2b (ENSCARG00000051672)	memo1 (ENSCARG00000051685)	ENSCARG00000051770	ENSCARG00000051875	PSME4 (ENSCARG00000053232)	GPR75 (ENSCARG00000053908)	erlec1 (ENSCARG00000053935)	agpat4 (ENSCARG00000054151) ##22	ENSCARG00000054371	ENSCARG00000059045	kcnk1b (ENSCARG00000059057)	tacc3 (ENSCARG00000059065)	mycla (ENSCARG00000053201)	mfsd2aa (ENSCARG00000053382)	si:ch211-67f13.7 (ENSCARG00000054248)	ENSCARG00000054260	ENSCARG00000054274	ENSCARG00000054303	lgmn (ENSCARG00000054344)	PCNX1 (ENSCARG00000054813)	med6 (ENSCARG00000057006)	ENSCARG00000057187	MAP3K9 (ENSCARG00000057231)
Cyprininae_a	ANCESTRAL SPECIES	167	ENSGT00940000162838.g.b	ENSGT00950000183045.B.i	ENSGT00940000159062.c.a	ENSGT00940000158513.o	ENSGT00940000156461.g	ENSGT00940000166212.s.a	ENSGT00390000016400.d	ENSGT00950000182886.b.a.a.a	ENSGT00390000006408.`c	ENSGT00390000012017.e.a.a	ENSGT00390000012017.f	ENSGT00940000157846.c.a.b	ENSGT00390000011433.s.a.a	ENSGT00390000007723.f	ENSGT00530000063603.B.d	ENSGT00950000182836.b.b.b.b.d ##22	ENSGT00940000165701.j	ENSGT00940000155293.a.a.p.a	ENSGT00940000158858.t	ENSGT00940000158613.l.c	ENSGT00390000005318.b.b.b.a.d	ENSGT01030000234567.A.a.a.a.a.a	ENSGT00940000154641.B.b.i	ENSGT01100000263652.b	ENSGT00940000154782.d.j.a	ENSGT00940000157417.g	ENSGT00390000017666.c	ENSGT00940000161472.e	ENSGT00940000158243.f	ENSGT00940000157547.e	ENSGT00520000055955.k
Common carp reference	MODERN SPECIES	48	flrt3 (ENSCCRG00000076283)	tasp1 (ENSCCRG00000059408)	KIF16B (ENSCCRG00000024733)	ism1 (ENSCCRG00000024737)	sptlc3 (ENSCCRG00000021300)	BTBD3 (ENSCCRG00000069327)	jag1b (ENSCCRG00000023729)	srd5a2b (ENSCCRG00000023679)	memo1 (ENSCCRG00000075241)	ENSCCRG00000063034	ENSCCRG00000058068	ENSCCRG00000031090	PSME4 (ENSCCRG00000031275)	ENSCCRG00000053798	erlec1 (ENSCCRG00000034613)	agpat4 (ENSCCRG00000008078) ##22	ENSCCRG00000034742	ENSCCRG00000039474	kcnk1b (ENSCCRG00000077242)	tacc3 (ENSCCRG00000004094)	mycla (ENSCCRG00000004114)	mfsd2aa (ENSCCRG00000004166)	si:ch211-67f13.7 (ENSCCRG00000005476)	ENSCCRG00000004993	ENSCCRG00000005494	ENSCCRG00000066742	lgmn (ENSCCRG00000057942)	ENSCCRG00000003956	med6 (ENSCCRG00000060643)	ENSCCRG00000082127	MAP3K9 (ENSCCRG00000040674)
Golden-line barbel	MODERN SPECIES	337						jag1b (ENSSGRG00000001565)	slx4ip (ENSSGRG00000007966)	srd5a2b (ENSSGRG00000007970)	memo1 (ENSSGRG00000007974)	ENSSGRG00000007977	ENSSGRG00000007979	ENSSGRG00000007994	PSME4 (ENSSGRG00000009040)	GPR75 (ENSSGRG00000009345)	erlec1 (ENSSGRG00000009346)	agpat4 (ENSSGRG00000009351) ##22	ENSSGRG00000009638	kcnk1b (ENSSGRG00000009720)	tacc3 (ENSSGRG00000009721)	mfsd2aa (ENSSGRG00000009727)	ENSSGRG00000009824	lgmn (ENSSGRG00000009826)	PCNX1 (ENSSGRG00000010187)	med6 (ENSSGRG00000011207)	ENSSGRG00000011222	MAP3K9 (ENSSGRG00000011225)	slc8a3 (ENSSGRG00000011236)	cox16 (ENSSGRG00000011238)	actn1 (ENSSGRG00000011426)	dcaf5 (ENSSGRG00000019409)	pacs2 (ENSSGRG00000019440)
Zebrafish	MODERN SPECIES	4	KIF16B (ENSDARG00000080018)	tasp1 (ENSDARG00000060580)	ism1 (ENSDARG00000020541)	sptlc3 (ENSDARG00000030743)	BTBD3 (ENSDARG00000087517)	jag1b (ENSDARG00000013168)	slx4ip (ENSDARG00000039069)	mkks (ENSDARG00000016139)	srd5a2b (ENSDARG00000039067)	memo1 (ENSDARG00000010823)	ENSDARG00000053386	ENSDARG00000060410	PSME4 (ENSDARG00000087911)	GPR75 (ENSDARG00000098526)	erlec1 (ENSDARG00000086309)	agpat4 (ENSDARG00000069044) ##22	ENSDARG00000104835	kcnk1b (ENSDARG00000017254)	tacc3 (ENSDARG00000005454)	mycla (ENSDARG00000006003)	mfsd2aa (ENSDARG00000030630)	si:ch211-67f13.7 (ENSDARG00000077845)	zgc:153911 (ENSDARG00000002509)	ENSDARG00000079155	ENSDARG00000060340	lgmn (ENSDARG00000039150)	PCNX1 (ENSDARG00000011819)	med6 (ENSDARG00000034734)	TTC9 (ENSDARG00000074363)	MAP3K9 (ENSDARG00000013491)	slc8a3 (ENSDARG00000004931)
Euteleosteomorpha	ANCESTRAL SPECIES	17	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000154292.a.b.d	ENSGT00940000177029.b	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00900000143203	ENSGT00940000165701	ENSGT00990000204854	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158302.d.a	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00950000183136.b.a.a
Acanthomorphata	ANCESTRAL SPECIES	16	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000154292.a.b.d	ENSGT00940000177029.b	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00900000143203	ENSGT00940000165701	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158302.d.a	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00940000165329	ENSGT00940000162809
Euacanthomorphacea	ANCESTRAL SPECIES	6	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000154292.a.b.d	ENSGT00940000177029.b	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00900000143203	ENSGT00940000165701	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158302.d.a	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00940000165329	ENSGT00940000162809
Percomorphaceae	ANCESTRAL SPECIES	5	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000154292.a.b.d	ENSGT00940000177029.b	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00940000165701	ENSGT00900000143203	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158302.d.a	ENSGT00940000159308.kb	ENSGT00940000179915	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D
Percomorphaceae_B	ANCESTRAL SPECIES	4	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000154292.a.b.d	ENSGT00940000177029.b	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00900000143203	ENSGT00940000165701	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158302.d.a	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00940000165329	ENSGT00940000162809
Percomorphaceae_C	ANCESTRAL SPECIES	18	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000154292.a.b.d	ENSGT00940000177029.b	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00940000165701	ENSGT00900000143203	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158302.d.a.i	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00940000163741	ENSGT00940000177911
Eupercaria	ANCESTRAL SPECIES	15	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00940000165701	ENSGT00900000143203	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00940000165329	ENSGT00940000164215	ENSGT00940000169924
Tetraodontidae	ANCESTRAL SPECIES	7	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00940000165701	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000004172.g	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000158276	ENSGT00940000159308.kb	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00940000165329	ENSGT00940000164215	ENSGT00940000155080
Fugu	MODERN SPECIES	16	FOXN2 (ENSTRUG00000013724)	ppp1r21 (ENSTRUG00000013766)	STON1 (ENSTRUG00000013959)	gtf2a1l (ENSTRUG00000024053)	LHCGR (ENSTRUG00000014020)	ENSTRUG00000019977	nrxn1b (ENSTRUG00000016409)	erlec1 (ENSTRUG00000016400)	GPR75 (ENSTRUG00000016399)	PSME4 (ENSTRUG00000016378)	ENSTRUG00000016372	ENSTRUG00000027128	ENSTRUG00000026015	SLC35F3 (ENSTRUG00000016329)	THBS2 (ENSTRUG00000031037)	agpat4 (ENSTRUG00000016354) ##22	ENSTRUG00000016338	kcnk1b (ENSTRUG00000016334)	SLC35F3 (ENSTRUG00000030412)	ENSTRUG00000016320	ENSTRUG00000028842	rsph3 (ENSTRUG00000016315)	ENSTRUG00000031709	zgc:172136 (ENSTRUG00000016301)	fam135a (ENSTRUG00000016258)	ENSTRUG00000027403	ENSTRUG00000020887	lmbrd1 (ENSTRUG00000015962)	ENSTRUG00000029583	ADGRB3 (ENSTRUG00000015830)	ENSTRUG00000026861
Tetraodon	MODERN SPECIES	9	ENSTNIG00000016605	KCNK12 (ENSTNIG00000016604)	msh6 (ENSTNIG00000016603)	ENSTNIG00000016602	FOXN2 (ENSTNIG00000016601)	ppp1r21 (ENSTNIG00000016600)	STON1 (ENSTNIG00000016599)	LHCGR (ENSTNIG00000016598)	nrxn1b (ENSTNIG00000016597)	erlec1 (ENSTNIG00000016596)	GPR75 (ENSTNIG00000016595)	PSME4 (ENSTNIG00000016594)	ENSTNIG00000001096	ENSTNIG00000001688	THBS2 (ENSTNIG00000016593)	agpat4 (ENSTNIG00000016592) ##22	ENSTNIG00000016591	kcnk1b (ENSTNIG00000016590)	SLC35F3 (ENSTNIG00000016589)	ENSTNIG00000016588	rsph3 (ENSTNIG00000016587)	TARBP1 (ENSTNIG00000016586)	zgc:172136 (ENSTNIG00000016585)	fam135a (ENSTNIG00000016584)	ENSTNIG00000016583	COL19A1 (ENSTNIG00000016582)	lmbrd1 (ENSTNIG00000016581)	ADGRB3 (ENSTNIG00000016580)	ENSTNIG00000016579	ENSTNIG00000001031	ENSTNIG00000001725
Eupecaria_A	ANCESTRAL SPECIES	1	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000154292.a.b.d	ENSGT00940000177029.b	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00940000165701	ENSGT00900000143203	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00940000165329	ENSGT00940000155080	ENSGT00950000183045.A.a.b
Ballan wrasse	MODERN SPECIES	51						gtf2a1l (ENSLBEG00000011008)	LHCGR (ENSLBEG00000011063)	NRXN1 (ENSLBEG00000011110)	ENSLBEG00000011199	erlec1 (ENSLBEG00000011231)	GPR75 (ENSLBEG00000011300)	PSME4 (ENSLBEG00000011344)	ENSLBEG00000011479	ENSLBEG00000011524	THBS2 (ENSLBEG00000011604)	agpat4 (ENSLBEG00000011730) ##22	ENSLBEG00000011825	kcnk1b (ENSLBEG00000012007)	SLC35F3 (ENSLBEG00000012069)	ENSLBEG00000012110	TARBP1 (ENSLBEG00000012132)	zgc:172136 (ENSLBEG00000012206)	fam135a (ENSLBEG00000012293)	col9a1b (ENSLBEG00000012410)	ENSLBEG00000012539	ENSLBEG00000012583	ENSLBEG00000012609	lmbrd1 (ENSLBEG00000012666)	ADGRB3 (ENSLBEG00000012775)	ENSLBEG00000012961	ENSLBEG00000012983
Eupecaria_B	ANCESTRAL SPECIES	3	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00940000165701	ENSGT00900000143203	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00940000165329	ENSGT00940000155080	ENSGT00950000183045.A.a.b
Perciformes	ANCESTRAL SPECIES	17	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000154292.a.b.d	ENSGT00940000177029.b	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00940000165701	ENSGT00900000143203	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00940000165329	ENSGT00940000155080	ENSGT00950000183045.A.a.b
Perciformes_a	ANCESTRAL SPECIES	16	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000154292.a.b.d	ENSGT00940000177029.b	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00940000165701	ENSGT00900000143203	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158276	ENSGT00940000159308.kb	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00940000165329	ENSGT00940000155080
Pike perch	MODERN SPECIES	10	KCNK12 (ENSSLUG00000000611)	msh6 (ENSSLUG00000000617)	ENSSLUG00000000671	FOXN2 (ENSSLUG00000000814)	ppp1r21 (ENSSLUG00000000856)	STON1 (ENSSLUG00000001047)	ENSSLUG00000001049	gtf2a1l (ENSSLUG00000001051)	LHCGR (ENSSLUG00000001062)	nrxn1b (ENSSLUG00000001201)	erlec1 (ENSSLUG00000001976)	GPR75 (ENSSLUG00000002023)	PSME4 (ENSSLUG00000002206)	ENSSLUG00000004729	THBS2 (ENSSLUG00000004880)	agpat4 (ENSSLUG00000007886) ##22	ENSSLUG00000008102	ENSSLUG00000012631	kcnk1b (ENSSLUG00000012635)	SLC35F3 (ENSSLUG00000012642)	ENSSLUG00000012674	TARBP1 (ENSSLUG00000012680)	zgc:172136 (ENSSLUG00000012685)	fam135a (ENSSLUG00000012691)	col9a1b (ENSSLUG00000012722)	ENSSLUG00000012733	lmbrd1 (ENSSLUG00000012768)	ADGRB3 (ENSSLUG00000013242)	ENSSLUG00000014149	ENSSLUG00000014197	ENSSLUG00000014215
Channel bull blenny	MODERN SPECIES	6	msh6 (ENSCGOG00000024492)	ENSCGOG00000024506	FOXN2 (ENSCGOG00000024538)	ppp1r21 (ENSCGOG00000006886)	STON1 (ENSCGOG00000007931)	gtf2a1l (ENSCGOG00000007932)	LHCGR (ENSCGOG00000007939)	nrxn1b (ENSCGOG00000008295)	ENSCGOG00000011552	erlec1 (ENSCGOG00000011559)	GPR75 (ENSCGOG00000011823)	PSME4 (ENSCGOG00000011892)	ENSCGOG00000013851	THBS2 (ENSCGOG00000013876)	ENSCGOG00000015057	agpat4 (ENSCGOG00000015457) ##22	ENSCGOG00000015745	ENSCGOG00000017370	kcnk1b (ENSCGOG00000017372)	SLC35F3 (ENSCGOG00000017373)	ENSCGOG00000017375	TARBP1 (ENSCGOG00000017378)	zgc:172136 (ENSCGOG00000017394)	fam135a (ENSCGOG00000017403)	ENSCGOG00000017758	ENSCGOG00000017766	lmbrd1 (ENSCGOG00000017790)	ADGRB3 (ENSCGOG00000018236)	ENSCGOG00000019278	ENSCGOG00000019280	ENSCGOG00000019285
Cottioidei	ANCESTRAL SPECIES	17	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000176000	ENSGT00940000157364.B	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00940000165701	ENSGT00900000143203	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00940000162809	ENSGT00940000169924	ENSGT00940000155080
Stickleback	MODERN SPECIES	6	itga9 (ENSGACG00000005354)	GOLGA4 (ENSGACG00000005370)	KCNK12 (ENSGACG00000005387)	msh6 (ENSGACG00000005392)	ENSGACG00000005432	FOXN2 (ENSGACG00000005486)	ppp1r21 (ENSGACG00000005491)	STON1 (ENSGACG00000005527)	LHCGR (ENSGACG00000005554)	nrxn1b (ENSGACG00000005573)	erlec1 (ENSGACG00000005596)	ENSGACG00000005682	PSME4 (ENSGACG00000005686)	ENSGACG00000005759	THBS2 (ENSGACG00000005771)	agpat4 (ENSGACG00000005781) ##22	ENSGACG00000005813	kcnk1b (ENSGACG00000005832)	SLC35F3 (ENSGACG00000005849)	ENSGACG00000005859	TARBP1 (ENSGACG00000005865)	zgc:172136 (ENSGACG00000005885)	fam135a (ENSGACG00000005893)	col9a1b (ENSGACG00000005921)	ENSGACG00000005946	lmbrd1 (ENSGACG00000005964)	ADGRB3 (ENSGACG00000006014)	ENSGACG00000006039	ENSGACG00000006061	ENSGACG00000006065	ENSGACG00000006067
Eupecaria_C	ANCESTRAL SPECIES	1	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00900000143203	ENSGT00940000165701	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00940000165329	ENSGT00940000155080	ENSGT00950000183045.A.a.b	ENSGT00940000157134
Gilthead seabream	MODERN SPECIES	6	KCNK12 (ENSSAUG00010025605)	msh6 (ENSSAUG00010025603)	ENSSAUG00010025589	FOXN2 (ENSSAUG00010025584)	ppp1r21 (ENSSAUG00010025560)	STON1 (ENSSAUG00010025551)	gtf2a1l (ENSSAUG00010025547)	LHCGR (ENSSAUG00010025540)	ENSSAUG00010025536	nrxn1b (ENSSAUG00010023767)	erlec1 (ENSSAUG00010023627)	GPR75 (ENSSAUG00010023619)	PSME4 (ENSSAUG00010023586)	ENSSAUG00010023566	THBS2 (ENSSAUG00010022066)	agpat4 (ENSSAUG00010022061) ##22	ENSSAUG00010022059	ENSSAUG00010018576	kcnk1b (ENSSAUG00010018561)	SLC35F3 (ENSSAUG00010018559)	ENSSAUG00010018556	TARBP1 (ENSSAUG00010018534)	zgc:172136 (ENSSAUG00010018524)	fam135a (ENSSAUG00010018498)	ENSSAUG00010018490	ENSSAUG00010018487	lmbrd1 (ENSSAUG00010018211)	ADGRB3 (ENSSAUG00010017264)	ENSSAUG00010017226	ENSSAUG00010017225	ENSSAUG00010017221
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	1	ENSGT00730000111139	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000154292.a.b.d	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00940000165701	ENSGT00900000143203	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00940000165329	ENSGT00940000155080	ENSGT00950000183045.A.a.b	ENSGT00940000157134
European seabass	MODERN SPECIES	1	itga9 (ENSDLAG00005008689)	ENSDLAG00005008919	ENSDLAG00005026949	msh6 (ENSDLAG00005009510)	ENSDLAG00005009587	FOXN2 (ENSDLAG00005033023)	PPP1R21 (ENSDLAG00005009826)	GTF2A1L (ENSDLAG00005032828)	LHCGR (ENSDLAG00005010333)	NRXN1 (ENSDLAG00005010554)	ENSDLAG00005030544	ENSDLAG00005014210	ENSDLAG00005014383	ENSDLAG00005015438	ENSDLAG00005015473	agpat4 (ENSDLAG00005015886) ##22	ENSDLAG00005015953	ENSDLAG00005019057	kcnk1b (ENSDLAG00005027180)	ENSDLAG00005027323	TARBP1 (ENSDLAG00005019113)	fam135a (ENSDLAG00005019353)	ENSDLAG00005019500	COL19A1 (ENSDLAG00005019537)	lmbrd1 (ENSDLAG00005019575)	ADGRB3 (ENSDLAG00005019712)	ENSDLAG00005021305	ENSDLAG00005021317	ENSDLAG00005021338	KHDRBS2 (ENSDLAG00005021369)	prim2 (ENSDLAG00005021380)
Large yellow croaker	MODERN SPECIES	2	GOLGA4 (ENSLCRG00005012812)	KCNK12 (ENSLCRG00005012813)	msh6 (ENSLCRG00005012814)	ENSLCRG00005012816	FOXN2 (ENSLCRG00005013024)	ppp1r21 (ENSLCRG00005013026)	STON1 (ENSLCRG00005013085)	gtf2a1l (ENSLCRG00005013086)	LHCGR (ENSLCRG00005013089)	nrxn1b (ENSLCRG00005013146)	erlec1 (ENSLCRG00005016509)	GPR75 (ENSLCRG00005016609)	PSME4 (ENSLCRG00005016621)	ENSLCRG00005001553	THBS2 (ENSLCRG00005001662)	agpat4 (ENSLCRG00005002142) ##22	ENSLCRG00005002210	ENSLCRG00005008712	kcnk1b (ENSLCRG00005008714)	SLC35F3 (ENSLCRG00005008715)	ENSLCRG00005008717	TARBP1 (ENSLCRG00005008723)	zgc:172136 (ENSLCRG00005008743)	fam135a (ENSLCRG00005008746)	ENSLCRG00005008766	COL19A1 (ENSLCRG00005008786)	lmbrd1 (ENSLCRG00005008794)	ADGRB3 (ENSLCRG00005008844)	ENSLCRG00005009952	ENSLCRG00005009955	ENSLCRG00005009956
Percomorphaceae_D	ANCESTRAL SPECIES	19	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000154292.a.b.d	ENSGT00940000177029.b	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00940000165701	ENSGT00900000143203	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158276	ENSGT00940000158302.d.a.i	ENSGT00940000159308.kb	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00940000163741
Carangaria	ANCESTRAL SPECIES	19	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000154292.a.b.d	ENSGT00940000177029.b	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00900000143203	ENSGT00940000165701	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158302.d.a.i	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00940000163741	ENSGT00940000177911
Pleuronectoidei	ANCESTRAL SPECIES	3	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000154292.a.b.d	ENSGT00940000177029.b	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00900000143203	ENSGT00940000165701	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00940000165329	ENSGT00940000155080	ENSGT00950000183045.A.a.b
Tongue sole	MODERN SPECIES	3	st3gal7 (ENSCSEG00000006314)	ANKRD2 (ENSCSEG00000006304)	morn4 (ENSCSEG00000006299)	ENSCSEG00000006294	gtf2a1l (ENSCSEG00000006290)	ENSCSEG00000006282	ENSCSEG00000006279	ENSCSEG00000006277	nrxn1b (ENSCSEG00000006156)	erlec1 (ENSCSEG00000006132)	GPR75 (ENSCSEG00000006128)	PSME4 (ENSCSEG00000006059)	ENSCSEG00000006049	ENSCSEG00000006045	THBS2 (ENSCSEG00000006006)	agpat4 (ENSCSEG00000005977) ##22	ENSCSEG00000005969	ENSCSEG00000005931	kcnk1b (ENSCSEG00000005918)	SLC35F3 (ENSCSEG00000005906)	ENSCSEG00000005282	TARBP1 (ENSCSEG00000005255)	zgc:172136 (ENSCSEG00000005236)	fam135a (ENSCSEG00000005211)	ENSCSEG00000005194	ENSCSEG00000005167	lmbrd1 (ENSCSEG00000005160)	ADGRB3 (ENSCSEG00000005140)	ENSCSEG00000005110	ENSCSEG00000005086	ENSCSEG00000005070
Turbot	MODERN SPECIES	6	ENSSMAG00000024041	ENSSMAG00000008237	ENSSMAG00000008157	FOXN2 (ENSSMAG00000008132)	PPP1R21 (ENSSMAG00000008023)	STON1 (ENSSMAG00000008014)	LHCGR (ENSSMAG00000007980)	LHCGR (ENSSMAG00000037621)	ENSSMAG00000007966	NRXN1 (ENSSMAG00000007668)	erlec1 (ENSSMAG00000007601)	ENSSMAG00000007593	PSME4 (ENSSMAG00000007512)	ENSSMAG00000007476	ENSSMAG00000007386	agpat4 (ENSSMAG00000007368) ##22	ENSSMAG00000007353	ENSSMAG00000007154	kcnk1b (ENSSMAG00000007131)	ENSSMAG00000007120	TARBP1 (ENSSMAG00000007081)	zgc:172136 (ENSSMAG00000007052)	fam135a (ENSSMAG00000006999)	col9a1b (ENSSMAG00000006956)	ENSSMAG00000006889	lmbrd1 (ENSSMAG00000006832)	ADGRB3 (ENSSMAG00000006520)	ENSSMAG00000006503	ENSSMAG00000006476	KHDRBS2 (ENSSMAG00000006422)	PRIM2 (ENSSMAG00000006372)
Carangaria_A	ANCESTRAL SPECIES	29	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000154292.a.b.d	ENSGT00940000177029.b	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00900000143203	ENSGT00940000165701	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158302.d.a.i	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00940000163741	ENSGT00940000177911
Seriola	ANCESTRAL SPECIES	14	ENSGT00730000111139	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000154292.a.b.d	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00900000143203	ENSGT00940000165701	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158302.d.a.i	ENSGT00940000159308.kb	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00940000163741	ENSGT00940000177911
Yellowtail amberjack	DUPLICATION
Yellowtail amberjack	MODERN SPECIES	2884	msh6 (ENSSLDG00000021628)	ENSSLDG00000021561	FOXN2 (ENSSLDG00000021540)	ppp1r21 (ENSSLDG00000021448)	STON1 (ENSSLDG00000021433)	gtf2a1l (ENSSLDG00000021374)	LHCGR (ENSSLDG00000021349)	nrxn1b (ENSSLDG00000021098)	ENSSLDG00000021040	erlec1 (ENSSLDG00000020984)	GPR75 (ENSSLDG00000020978)	PSME4 (ENSSLDG00000020757)	ENSSLDG00000020712	ENSSLDG00000020689	THBS2 (ENSSLDG00000020615)	agpat4 (ENSSLDG00000020579) ##22	agpat4 (ENSSLDG00000020541) ##22	ENSSLDG00000020518	ENSSLDG00000020326	kcnk1b (ENSSLDG00000020290)	SLC35F3 (ENSSLDG00000020267)	ENSSLDG00000020256	TARBP1 (ENSSLDG00000020200)	zgc:172136 (ENSSLDG00000020181)	fam135a (ENSSLDG00000020061)	col9a1b (ENSSLDG00000019991)	ENSSLDG00000019849	lmbrd1 (ENSSLDG00000019780)	ADGRB3 (ENSSLDG00000019515)	ENSSLDG00000019454	ENSSLDG00000019443
Yellowtail amberjack	MODERN SPECIES	2884	ENSSLDG00000021561	FOXN2 (ENSSLDG00000021540)	ppp1r21 (ENSSLDG00000021448)	STON1 (ENSSLDG00000021433)	gtf2a1l (ENSSLDG00000021374)	LHCGR (ENSSLDG00000021349)	nrxn1b (ENSSLDG00000021098)	ENSSLDG00000021040	erlec1 (ENSSLDG00000020984)	GPR75 (ENSSLDG00000020978)	PSME4 (ENSSLDG00000020757)	ENSSLDG00000020712	ENSSLDG00000020689	THBS2 (ENSSLDG00000020615)	agpat4 (ENSSLDG00000020579) ##22	agpat4 (ENSSLDG00000020541) ##22	ENSSLDG00000020518	ENSSLDG00000020326	kcnk1b (ENSSLDG00000020290)	SLC35F3 (ENSSLDG00000020267)	ENSSLDG00000020256	TARBP1 (ENSSLDG00000020200)	zgc:172136 (ENSSLDG00000020181)	fam135a (ENSSLDG00000020061)	col9a1b (ENSSLDG00000019991)	ENSSLDG00000019849	lmbrd1 (ENSSLDG00000019780)	ADGRB3 (ENSSLDG00000019515)	ENSSLDG00000019454	ENSSLDG00000019443	ENSSLDG00000019433
Greater amberjack	DUPLICATION
Greater amberjack	MODERN SPECIES	9															THBS2 (ENSSDUG00000000558)	agpat4 (ENSSDUG00000000353) ##22	agpat4 (ENSSDUG00000000319) ##22	ENSSDUG00000000294	ENSSDUG00000000076	kcnk1b (ENSSDUG00000000058)	SLC35F3 (ENSSDUG00000023572)	ENSSDUG00000023571	TARBP1 (ENSSDUG00000023566)	zgc:172136 (ENSSDUG00000023563)	ENSSDUG00000023560	ENSSDUG00000023558	col9a1b (ENSSDUG00000023550)	ENSSDUG00000023546	ENSSDUG00000023543	lmbrd1 (ENSSDUG00000023536)	ADGRB3 (ENSSDUG00000023531)
Greater amberjack	MODERN SPECIES	9														THBS2 (ENSSDUG00000000558)	agpat4 (ENSSDUG00000000353) ##22	agpat4 (ENSSDUG00000000319) ##22	ENSSDUG00000000294	ENSSDUG00000000076	kcnk1b (ENSSDUG00000000058)	SLC35F3 (ENSSDUG00000023572)	ENSSDUG00000023571	TARBP1 (ENSSDUG00000023566)	zgc:172136 (ENSSDUG00000023563)	ENSSDUG00000023560	ENSSDUG00000023558	col9a1b (ENSSDUG00000023550)	ENSSDUG00000023546	ENSSDUG00000023543	lmbrd1 (ENSSDUG00000023536)	ADGRB3 (ENSSDUG00000023531)	ENSSDUG00000023528
Barramundi perch	MODERN SPECIES	169							gtf2a1l (ENSLCAG00010014904)	LHCGR (ENSLCAG00010014915)	nrxn1b (ENSLCAG00010015182)	ENSLCAG00010015819	erlec1 (ENSLCAG00010015826)	GPR75 (ENSLCAG00010015846)	PSME4 (ENSLCAG00010015920)	ENSLCAG00010016138	THBS2 (ENSLCAG00010016264)	agpat4 (ENSLCAG00010016557) ##22	ENSLCAG00010016698	ENSLCAG00010017062	kcnk1b (ENSLCAG00010017064)	SLC35F3 (ENSLCAG00010017068)	ENSLCAG00010017072	zgc:172136 (ENSLCAG00010017081)	fam135a (ENSLCAG00010017105)	COL9A1 (ENSLCAG00010017127)	ENSLCAG00010017131	ENSLCAG00010017135	ENSLCAG00010017139	lmbrd1 (ENSLCAG00010017159)	ADGRB3 (ENSLCAG00010017210)	ENSLCAG00010017278	ENSLCAG00010017280
Anabantaria	ANCESTRAL SPECIES	17	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000154292.a.b.d	ENSGT00940000177029.b	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00940000165701	ENSGT00900000143203	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00940000165329	ENSGT00940000155080	ENSGT00950000183045.A.a.b
Anabantoidei	ANCESTRAL SPECIES	17	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000154292.a.b.d	ENSGT00940000177029.b	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00940000165701	ENSGT00900000143203	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00940000165329	ENSGT00940000155080	ENSGT00950000183045.A.a.b
Climbing perch	MODERN SPECIES	6	ENSATEG00000019323	FOXN2 (ENSATEG00000019400)	ppp1r21 (ENSATEG00000019424)	STON1 (ENSATEG00000019499)	gtf2a1l (ENSATEG00000027167)	LHCGR (ENSATEG00000019538)	NRXN1 (ENSATEG00000019591)	ENSATEG00000019686	ENSATEG00000019697	erlec1 (ENSATEG00000019717)	ENSATEG00000019762	PSME4 (ENSATEG00000019773)	ENSATEG00000019885	ENSATEG00000030197	ENSATEG00000019901	agpat4 (ENSATEG00000020027) ##22	ENSATEG00000020068	ENSATEG00000025457	kcnk1b (ENSATEG00000025224)	ENSATEG00000020236	TARBP1 (ENSATEG00000020266)	zgc:172136 (ENSATEG00000020306)	fam135a (ENSATEG00000020365)	col9a1b (ENSATEG00000020408)	ENSATEG00000020514	lmbrd1 (ENSATEG00000020536)	ADGRB3 (ENSATEG00000020606)	ENSATEG00000029143	ENSATEG00000020734	ENSATEG00000020763	KHDRBS2 (ENSATEG00000020863)
Siamese fighting fish	MODERN SPECIES	6	msh6 (ENSBSLG00000020212)	ENSBSLG00000020227	FOXN2 (ENSBSLG00000020404)	ppp1r21 (ENSBSLG00000020417)	STON1 (ENSBSLG00000020435)	gtf2a1l (ENSBSLG00000020436)	LHCGR (ENSBSLG00000013219)	nrxn1b (ENSBSLG00000013551)	ENSBSLG00000015863	ENSBSLG00000015864	erlec1 (ENSBSLG00000015870)	GPR75 (ENSBSLG00000015928)	PSME4 (ENSBSLG00000017025)	ENSBSLG00000019310	THBS2 (ENSBSLG00000019337)	agpat4 (ENSBSLG00000020964) ##22	prim2 (ENSBSLG00000021127)	khdrbs2 (ENSBSLG00000021217)	ENSBSLG00000021276	PHF3 (ENSBSLG00000021295)	ENSBSLG00000021389	ADGRB3 (ENSBSLG00000021586)	lmbrd1 (ENSBSLG00000022884)	ENSBSLG00000023211	ENSBSLG00000023222	ENSBSLG00000023272	fam135a (ENSBSLG00000023290)	zgc:172136 (ENSBSLG00000023341)	TARBP1 (ENSBSLG00000023354)	ENSBSLG00000023393	SLC35F3 (ENSBSLG00000023470)
Zig-zag eel	MODERN SPECIES	6	ENSMAMG00000021581	FOXN2 (ENSMAMG00000027340)	ppp1r21 (ENSMAMG00000021599)	STON1 (ENSMAMG00000021612)	gtf2a1l (ENSMAMG00000021615)	LHCGR (ENSMAMG00000021622)	NRXN1 (ENSMAMG00000021625)	ENSMAMG00000021645	erlec1 (ENSMAMG00000021651)	ENSMAMG00000021657	PSME4 (ENSMAMG00000021658)	ENSMAMG00000021668	ENSMAMG00000021677	ENSMAMG00000024937	ENSMAMG00000021682	agpat4 (ENSMAMG00000021738) ##22	ENSMAMG00000021703	ENSMAMG00000021743	kcnk1b (ENSMAMG00000021745)	ENSMAMG00000021748	ENSMAMG00000021753	TARBP1 (ENSMAMG00000021760)	zgc:172136 (ENSMAMG00000021773)	fam135a (ENSMAMG00000021781)	col9a1b (ENSMAMG00000021789)	ENSMAMG00000021803	lmbrd1 (ENSMAMG00000021805)	ADGRB3 (ENSMAMG00000021818)	ENSMAMG00000024686	ENSMAMG00000021838	ENSMAMG00000021841
Ovalentaria	ANCESTRAL SPECIES	18	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000154292.a.b.d	ENSGT00940000177029.b	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00900000143203	ENSGT00940000165701	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158302.d.a	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00940000163741	ENSGT00940000177911
Ovalentaria_B	ANCESTRAL SPECIES	7	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000154292.a.b.d	ENSGT00940000177029.b	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017.p	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00900000143203	ENSGT00940000165701	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158302.d.a	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00940000163741	ENSGT00940000177911
Pomacentridae	ANCESTRAL SPECIES	9	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000154292.a.b.d.d	ENSGT00940000177029.b	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017.p	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00900000143203	ENSGT00940000165701	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158302.d.a	ENSGT00940000159308.kb	ENSGT00940000163557.C	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D
Pomacentridae_A	ANCESTRAL SPECIES	7	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000154292.a.b.d.d	ENSGT00940000177029.b	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a.c	ENSGT00390000012017.p	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00900000143203	ENSGT00940000165701	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158302.d.a	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00940000163741	ENSGT00940000160615.a.b
Amphiprion	ANCESTRAL SPECIES	175									ENSGT00940000154292.a.b.d.d	ENSGT00940000177029.b	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a.c	ENSGT00390000012017.p	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00900000143203	ENSGT00940000165701	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158302.d.a	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00940000163741	ENSGT00940000160615.a.b
Orange clownfish	MODERN SPECIES	5	STON1 (ENSAPEG00000013911)	gtf2a1l (ENSAPEG00000013898)	LHCGR (ENSAPEG00000013866)	ENSAPEG00000013828	ENSAPEG00000013794	ENSAPEG00000013785	ENSAPEG00000013767	ENSAPEG00000013754	nrxn1b (ENSAPEG00000013674)	erlec1 (ENSAPEG00000013586)	GPR75 (ENSAPEG00000013572)	PSME4 (ENSAPEG00000013431)	ENSAPEG00000013368	ENSAPEG00000013336	THBS2 (ENSAPEG00000013242)	agpat4 (ENSAPEG00000013212) ##22	ENSAPEG00000013190	ENSAPEG00000013000	kcnk1b (ENSAPEG00000012959)	SLC35F3 (ENSAPEG00000012939)	ENSAPEG00000012925	ENSAPEG00000012906	zgc:172136 (ENSAPEG00000012895)	fam135a (ENSAPEG00000012871)	col9a1b (ENSAPEG00000012726)	ENSAPEG00000012656	ENSAPEG00000012635	lmbrd1 (ENSAPEG00000012578)	ADGRB3 (ENSAPEG00000012481)	ENSAPEG00000012442	ENSAPEG00000012415
Clown anemonefish	MODERN SPECIES	3485								ENSAOCG00000002025	ENSAOCG00000009076	nrxn1b (ENSAOCG00000000563)	erlec1 (ENSAOCG00000009379)	GPR75 (ENSAOCG00000000566)	PSME4 (ENSAOCG00000009496)	ENSAOCG00000009520	THBS2 (ENSAOCG00000000592)	agpat4 (ENSAOCG00000009687) ##22	ENSAOCG00000009821	kcnk1b (ENSAOCG00000009855)	SLC35F3 (ENSAOCG00000009901)	ENSAOCG00000009926	ENSAOCG00000009950	zgc:172136 (ENSAOCG00000009972)	fam135a (ENSAOCG00000010024)	col9a1b (ENSAOCG00000010103)	ENSAOCG00000010163	ENSAOCG00000010191	lmbrd1 (ENSAOCG00000010242)	ADGRB3 (ENSAOCG00000010270)
Spiny chromis	MODERN SPECIES	222													ENSAPOG00000015938	ENSAPOG00000015959	THBS2 (ENSAPOG00000016058)	agpat4 (ENSAPOG00000016101) ##22	ENSAPOG00000016131	ENSAPOG00000016326	kcnk1b (ENSAPOG00000016347)	SLC35F3 (ENSAPOG00000016394)	ENSAPOG00000016408	TARBP1 (ENSAPOG00000016419)	zgc:172136 (ENSAPOG00000016440)	fam135a (ENSAPOG00000016458)	col9a1b (ENSAPOG00000016590)	ENSAPOG00000016673	ENSAPOG00000016701	lmbrd1 (ENSAPOG00000000459)	ADGRB3 (ENSAPOG00000016807)
Bicolor damselfish	MODERN SPECIES	442									nrxn1b (ENSSPAG00000022027)	erlec1 (ENSSPAG00000022060)	GPR75 (ENSSPAG00000022074)	PSME4 (ENSSPAG00000022078)	ENSSPAG00000022133	ENSSPAG00000022145	THBS2 (ENSSPAG00000022165)	agpat4 (ENSSPAG00000022207) ##22
Cichlidae	ANCESTRAL SPECIES	13	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017.o	ENSGT00390000012017.p	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00900000143203	ENSGT00940000165701	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158302.d.a	ENSGT00940000159308.kb	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00940000163741	ENSGT00940000177911
Pseudocrenilabrinae	ANCESTRAL SPECIES	16	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000154292.a.b.d	ENSGT00940000177029.b	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017.o	ENSGT00390000012017.p	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00900000143203	ENSGT00940000165701	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158302.d.a	ENSGT00940000159308.kb	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00940000163741	ENSGT00940000160615.a.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	11	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000154292.a.b.d	ENSGT00940000177029.b	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017.o	ENSGT00390000012017.p	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00940000165701	ENSGT00900000143203	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158302.d.a	ENSGT00940000159308.kb	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00940000163741	ENSGT00940000160615.a.b
Haplochromini	ANCESTRAL SPECIES	10	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000154292.a.b.d	ENSGT00940000177029.b	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017.o	ENSGT00390000012017.p	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00940000165701	ENSGT00900000143203	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158302.d.a	ENSGT00940000159308.kb	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00940000163741	ENSGT00940000160615.a.b
Burton s mouthbrooder	MODERN SPECIES	279	msh6 (ENSHBUG00000009824)	ENSHBUG00000009802	FOXN2 (ENSHBUG00000009734)	ppp1r21 (ENSHBUG00000009707)	STON1 (ENSHBUG00000009606)	ENSHBUG00000009599	LHCGR (ENSHBUG00000009591)	nrxn1b (ENSHBUG00000009549)	ENSHBUG00000009473	erlec1 (ENSHBUG00000009455)	GPR75 (ENSHBUG00000009399)	PSME4 (ENSHBUG00000009387)	ENSHBUG00000009271	ENSHBUG00000009241	THBS2 (ENSHBUG00000009211)	agpat4 (ENSHBUG00000009061) ##22	ENSHBUG00000009033	ENSHBUG00000008953	kcnk1b (ENSHBUG00000008933)	SLC35F3 (ENSHBUG00000008916)	ENSHBUG00000008890	TARBP1 (ENSHBUG00000008877)	zgc:172136 (ENSHBUG00000008861)	fam135a (ENSHBUG00000008772)	col9a1b (ENSHBUG00000008750)	ENSHBUG00000008672	lmbrd1 (ENSHBUG00000008559)	ADGRB3 (ENSHBUG00000008450)	ENSHBUG00000008103	ENSHBUG00000008092	PHF3 (ENSHBUG00000008057)
Haplochromini_A	ANCESTRAL SPECIES	8	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000154292.a.b.d	ENSGT00940000177029.b	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017.o	ENSGT00390000012017.p	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00940000165701	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158302.d.a	ENSGT00940000159308.kb	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00940000163741	ENSGT00940000160615.a.b	ENSGT00940000155080
P. nyererei	MODERN SPECIES	368	msh6 (ENSPNYG00000018307)	ENSPNYG00000018356	FOXN2 (ENSPNYG00000018415)	ppp1r21 (ENSPNYG00000018432)	STON1 (ENSPNYG00000018501)	gtf2a1l (ENSPNYG00000018511)	LHCGR (ENSPNYG00000018542)	nrxn1b (ENSPNYG00000018576)	ENSPNYG00000018620	erlec1 (ENSPNYG00000018639)	GPR75 (ENSPNYG00000018685)	PSME4 (ENSPNYG00000018711)	ENSPNYG00000018847	ENSPNYG00000018875	THBS2 (ENSPNYG00000018915)	agpat4 (ENSPNYG00000018995) ##22	ENSPNYG00000019026	kcnk1b (ENSPNYG00000019085)	SLC35F3 (ENSPNYG00000019101)	ENSPNYG00000019119	TARBP1 (ENSPNYG00000019135)	zgc:172136 (ENSPNYG00000019202)	fam135a (ENSPNYG00000019229)	col9a1b (ENSPNYG00000019285)	ENSPNYG00000019355	lmbrd1 (ENSPNYG00000019383)	ADGRB3 (ENSPNYG00000019418)	ENSPNYG00000019480	ENSPNYG00000019490	PHF3 (ENSPNYG00000019506)	ENSPNYG00000019531
Haplochromini_B	ANCESTRAL SPECIES	5	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000154292.a.b.d	ENSGT00940000177029.b	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017.o	ENSGT00390000012017.p	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00940000165701	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158302.d.a	ENSGT00940000159308.kb	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00940000163741	ENSGT00940000160615.a.b	ENSGT00940000155080
Eastern happy	MODERN SPECIES	4	KCNK12 (ENSACLG00000000222)	msh6 (ENSACLG00000000235)	ENSACLG00000000294	FOXN2 (ENSACLG00000000351)	ppp1r21 (ENSACLG00000000394)	STON1 (ENSACLG00000000523)	gtf2a1l (ENSACLG00000000542)	LHCGR (ENSACLG00000000561)	nrxn1b (ENSACLG00000000616)	ENSACLG00000001006	erlec1 (ENSACLG00000001050)	GPR75 (ENSACLG00000001123)	PSME4 (ENSACLG00000001144)	ENSACLG00000001451	THBS2 (ENSACLG00000001480)	agpat4 (ENSACLG00000001626) ##22	ENSACLG00000001769	kcnk1b (ENSACLG00000001964)	SLC35F3 (ENSACLG00000001977)	ENSACLG00000002014	ENSACLG00000002018	zgc:172136 (ENSACLG00000002029)	fam135a (ENSACLG00000002041)	ENSACLG00000002063	ENSACLG00000002105	ENSACLG00000002242	lmbrd1 (ENSACLG00000002288)	ADGRB3 (ENSACLG00000002351)	ENSACLG00000002550	ENSACLG00000002558	ENSACLG00000002573
Zebra mbuna	MODERN SPECIES	1095	msh6 (ENSMZEG00005006617)	ENSMZEG00005006518	FOXN2 (ENSMZEG00005006507)	ppp1r21 (ENSMZEG00005006418)	STON1 (ENSMZEG00005006402)	gtf2a1l (ENSMZEG00005006394)	LHCGR (ENSMZEG00005006356)	ENSMZEG00005006330	nrxn1b (ENSMZEG00005006282)	GPR75 (ENSMZEG00005006252)	erlec1 (ENSMZEG00005006219)	PSME4 (ENSMZEG00005006033)	ENSMZEG00005005982	ENSMZEG00005005961	THBS2 (ENSMZEG00005005891)	agpat4 (ENSMZEG00005005870) ##22	ENSMZEG00005005814	kcnk1b (ENSMZEG00005005796)	SLC35F3 (ENSMZEG00005005782)	ENSMZEG00005005773	TARBP1 (ENSMZEG00005005751)	zgc:172136 (ENSMZEG00005005734)	fam135a (ENSMZEG00005005715)	COL9A1 (ENSMZEG00005005703)	ENSMZEG00005005696	ENSMZEG00005005676	ENSMZEG00005005666	lmbrd1 (ENSMZEG00005005629)	ADGRB3 (ENSMZEG00005005567)	ENSMZEG00005005548	ENSMZEG00005005540
Lyretail cichlid	MODERN SPECIES	364	msh6 (ENSNBRG00000015186)	ENSNBRG00000015138	FOXN2 (ENSNBRG00000015119)	ppp1r21 (ENSNBRG00000015063)	STON1 (ENSNBRG00000015045)	ENSNBRG00000015035	LHCGR (ENSNBRG00000015006)	ENSNBRG00000014987	nrxn1b (ENSNBRG00000014934)	erlec1 (ENSNBRG00000014899)	GPR75 (ENSNBRG00000014887)	PSME4 (ENSNBRG00000014722)	ENSNBRG00000014649	ENSNBRG00000014630	THBS2 (ENSNBRG00000014573)	agpat4 (ENSNBRG00000014537) ##22	ENSNBRG00000014466	kcnk1b (ENSNBRG00000014423)	SLC35F3 (ENSNBRG00000014400)	ENSNBRG00000014386	ENSNBRG00000014368	zgc:172136 (ENSNBRG00000014336)	fam135a (ENSNBRG00000014275)	col9a1b (ENSNBRG00000014193)	ENSNBRG00000014107	ENSNBRG00000014100	lmbrd1 (ENSNBRG00000014043)	ADGRB3 (ENSNBRG00000013976)	ENSNBRG00000013949	ENSNBRG00000013933	ENSNBRG00000013912
Nile tilapia	MODERN SPECIES	4	msh6 (ENSONIG00000009861)	ENSONIG00000009859	FOXN2 (ENSONIG00000009856)	ppp1r21 (ENSONIG00000009853)	STON1 (ENSONIG00000009850)	gtf2a1l (ENSONIG00000033084)	gth-rii (ENSONIG00000032593)	ENSONIG00000039612	nrxn1b (ENSONIG00000009835)	ENSONIG00000031859	erlec1 (ENSONIG00000009830)	GPR75 (ENSONIG00000021264)	PSME4 (ENSONIG00000009819)	ENSONIG00000009817	THBS2 (ENSONIG00000009805)	agpat4 (ENSONIG00000009801) ##22	ENSONIG00000030253	ENSONIG00000009797	kcnk1 (ENSONIG00000036138)	slc35f3 (ENSONIG00000038716)	ENSONIG00000009792	TARBP1 (ENSONIG00000009789)	zgc:172136 (ENSONIG00000009786)	fam135a (ENSONIG00000009784)	ENSONIG00000009778	ENSONIG00000009773	lmbrd1 (ENSONIG00000009770)	ADGRB3 (ENSONIG00000009765)	ENSONIG00000009762	ENSONIG00000009760	ENSONIG00000009759
Midas cichlid	MODERN SPECIES	1196	msh6 (ENSACIG00000021689)	ENSACIG00000021646	FOXN2 (ENSACIG00000021633)	ppp1r21 (ENSACIG00000021597)	STON1 (ENSACIG00000021578)	ENSACIG00000021570	LHCGR (ENSACIG00000021547)	ENSACIG00000021537	nrxn1b (ENSACIG00000021500)	erlec1 (ENSACIG00000021463)	GPR75 (ENSACIG00000021457)	PSME4 (ENSACIG00000021367)	ENSACIG00000021344	ENSACIG00000021320	THBS2 (ENSACIG00000021287)	agpat4 (ENSACIG00000021263) ##22	ENSACIG00000021241	ENSACIG00000020995	kcnk1b (ENSACIG00000020962)	SLC35F3 (ENSACIG00000020948)	ENSACIG00000020943	ENSACIG00000020931	zgc:172136 (ENSACIG00000020906)	fam135a (ENSACIG00000020867)	col9a1b (ENSACIG00000020804)	ENSACIG00000020760	ENSACIG00000020734	lmbrd1 (ENSACIG00000020705)	ADGRB3 (ENSACIG00000020657)	ENSACIG00000020647	ENSACIG00000020638
Atherinomorphae	ANCESTRAL SPECIES	16	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00900000143203	ENSGT00940000165701	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158302.d.a	ENSGT00940000159308.kb	ENSGT00940000179915	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D
Oryzias	ANCESTRAL SPECIES	6	ENSGT00730000111139	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000154292.a.b.d	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00900000143203	ENSGT00940000165701	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000158276	ENSGT00940000157935.b	ENSGT00940000163514.C	ENSGT00940000162238.a.a	ENSGT00940000159308.kb	ENSGT00390000002581	ENSGT00940000155081.D
Oryzias_b	ANCESTRAL SPECIES	7	ENSGT00730000111139	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000154292.a.b.d	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00900000143203	ENSGT00940000165701	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00940000160615.a.b	ENSGT00940000169924	ENSGT00940000155080
Indian medaka	MODERN SPECIES	27	GOLGA4 (ENSOMEG00000001329)	KCNK12 (ENSOMEG00000001334)	msh6 (ENSOMEG00000001336)	ENSOMEG00000001341	FOXN2 (ENSOMEG00000001346)	ppp1r21 (ENSOMEG00000001353)	STON1 (ENSOMEG00000001360)	gtf2a1l (ENSOMEG00000001365)	LHCGR (ENSOMEG00000001366)	nrxn1b (ENSOMEG00000001387)	erlec1 (ENSOMEG00000001405)	GPR75 (ENSOMEG00000001409)	PSME4 (ENSOMEG00000001423)	ENSOMEG00000001433	THBS2 (ENSOMEG00000001451)	agpat4 (ENSOMEG00000001462) ##22	ENSOMEG00000001494	kcnk1b (ENSOMEG00000001508)	SLC35F3 (ENSOMEG00000001511)	ENSOMEG00000001515	ENSOMEG00000001519	zgc:172136 (ENSOMEG00000001523)	fam135a (ENSOMEG00000001537)	col9a1b (ENSOMEG00000001556)	ENSOMEG00000001566	lmbrd1 (ENSOMEG00000001573)	ADGRB3 (ENSOMEG00000001623)	ENSOMEG00000001646	ENSOMEG00000001654	ENSOMEG00000001659	ENSOMEG00000001671
Javanese ricefish	MODERN SPECIES	6	ppp1r21 (ENSOJAG00000006701)	STON1 (ENSOJAG00000006647)	gtf2a1l (ENSOJAG00000006631)	LHCGR (ENSOJAG00000006489)	nrxn1b (ENSOJAG00000021126)	slc34a2b (ENSOJAG00000020525)	psmb11b (ENSOJAG00000020432)	ENSOJAG00000020365	kyat3.2 (ENSOJAG00000020123)	ENSOJAG00000020097	erlec1 (ENSOJAG00000019809)	GPR75 (ENSOJAG00000019784)	PSME4 (ENSOJAG00000018407)	ENSOJAG00000018254	THBS2 (ENSOJAG00000017860)	agpat4 (ENSOJAG00000017813) ##22	ENSOJAG00000017782	ENSOJAG00000015893	kcnk1b (ENSOJAG00000015785)	SLC35F3 (ENSOJAG00000015760)	zgc:172136 (ENSOJAG00000015621)	fam135a (ENSOJAG00000015461)	col9a1b (ENSOJAG00000015367)	ENSOJAG00000015345	lmbrd1 (ENSOJAG00000015220)	ADGRB3 (ENSOJAG00000014066)	PHF3 (ENSOJAG00000013726)	ENSOJAG00000013672	khdrbs2 (ENSOJAG00000013655)	prim2 (ENSOJAG00000013486)	rab23 (ENSOJAG00000013466)
Oryzias_a	ANCESTRAL SPECIES	4	ENSGT00730000111139	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000154292.a.b.d	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00900000143203	ENSGT00940000165701	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000158276	ENSGT00940000163514.C	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00940000165329	ENSGT00940000155080	ENSGT00950000183045.A.a.b	ENSGT00940000157134
Chinese medaka	MODERN SPECIES	247	msh6 (ENSOSIG00000016948)	ENSOSIG00000016621	FOXN2 (ENSOSIG00000016613)	ppp1r21 (ENSOSIG00000016378)	STON1 (ENSOSIG00000016372)	ENSOSIG00000016370	gtf2a1l (ENSOSIG00000016367)	LHCGR (ENSOSIG00000016365)	ENSOSIG00000016362	nrxn1b (ENSOSIG00000012149)	erlec1 (ENSOSIG00000012060)	GPR75 (ENSOSIG00000012058)	PSME4 (ENSOSIG00000011939)	ENSOSIG00000011911	THBS2 (ENSOSIG00000007658)	agpat4 (ENSOSIG00000007606) ##22	ENSOSIG00000007605	ENSOSIG00000004494	kcnk1b (ENSOSIG00000004428)	SLC35F3 (ENSOSIG00000004421)	ENSOSIG00000004416	TARBP1 (ENSOSIG00000004409)	zgc:172136 (ENSOSIG00000004400)	fam135a (ENSOSIG00000004160)	ENSOSIG00000004114	ENSOSIG00000004086	ENSOSIG00000004059	lmbrd1 (ENSOSIG00000000770)	ADGRB3 (ENSOSIG00000000653)	ENSOSIG00000000643	PHF3 (ENSOSIG00000000422)
Japanese Medaka HdrR	MODERN SPECIES	6	msh6 (ENSORLG00000011074)	ENSORLG00000011053	FOXN2 (ENSORLG00000011005)	ppp1r21 (ENSORLG00000010991)	STON1 (ENSORLG00000010924)	gtf2a1l (ENSORLG00000027977)	lhcgr (ENSORLG00000010892)	ENSORLG00000027978	NRXN1 (ENSORLG00000010873)	ENSORLG00000023446	erlec1 (ENSORLG00000010856)	GPR75 (ENSORLG00000010839)	ENSORLG00000010747	THBS2 (ENSORLG00000010727)	PSME4 (ENSORLG00000010828)	agpat4 (ENSORLG00000010639) ##22	ENSORLG00000027478	ENSORLG00000010603	kcnk1b (ENSORLG00000010564)	ENSORLG00000010532	SLC35F3 (ENSORLG00000010544)	TARBP1 (ENSORLG00000010529)	zgc:172136 (ENSORLG00000010510)	fam135a (ENSORLG00000010498)	col9a1b (ENSORLG00000010431)	ENSORLG00000010350	lmbrd1 (ENSORLG00000010302)	ADGRB3 (ENSORLG00000010280)	ENSORLG00000010198	ENSORLG00000022448	ENSORLG00000010175
Cyprinodontiformes	ANCESTRAL SPECIES	17	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00900000143203	ENSGT00940000165701	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158302.d.a	ENSGT00940000159308.kb	ENSGT00940000179915	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D
Aplocheiloidei	ANCESTRAL SPECIES	28	ENSGT00730000111139	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000154292.a.b.d	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00940000165701	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000179915	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00940000177911	ENSGT00940000160615.a.b	ENSGT00940000169924
Mangrove rivulus	MODERN SPECIES	23	GOLGA4 (ENSKMAG00000016380)	KCNK12 (ENSKMAG00000016419)	msh6 (ENSKMAG00000016437)	ENSKMAG00000016462	FOXN2 (ENSKMAG00000016522)	ppp1r21 (ENSKMAG00000016541)	STON1 (ENSKMAG00000016625)	gtf2a1l (ENSKMAG00000016635)	LHCGR (ENSKMAG00000016701)	nrxn1b (ENSKMAG00000016776)	erlec1 (ENSKMAG00000016984)	GPR75 (ENSKMAG00000017037)	PSME4 (ENSKMAG00000017056)	ENSKMAG00000017139	THBS2 (ENSKMAG00000017188)	agpat4 (ENSKMAG00000017310) ##22	ENSKMAG00000017351	kcnk1b (ENSKMAG00000017469)	SLC35F3 (ENSKMAG00000017484)	ENSKMAG00000017523	TARBP1 (ENSKMAG00000017546)	zgc:172136 (ENSKMAG00000017593)	fam135a (ENSKMAG00000017630)	col9a1b (ENSKMAG00000017666)	ENSKMAG00000017701	ENSKMAG00000017723	lmbrd1 (ENSKMAG00000017778)	ADGRB3 (ENSKMAG00000017868)	ENSKMAG00000018067	ENSKMAG00000018083	ENSKMAG00000018115
Turquoise killifish	MODERN SPECIES	1575																agpat4 (ENSNFUG00015013879) ##22
Cyprinodontoidei	ANCESTRAL SPECIES	14	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00900000143203	ENSGT00940000165701	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158302.d.a	ENSGT00940000159308.kb	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00940000163741
Poeciliinae	ANCESTRAL SPECIES	16	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00900000143203	ENSGT00940000165701	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565.p	ENSGT00940000157935.b	ENSGT00940000158302.d.a	ENSGT00940000159308.kb	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00940000163741
Poecilia	ANCESTRAL SPECIES	11	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00900000143203	ENSGT00940000165701	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565.p	ENSGT00940000157935.b	ENSGT00940000158302.d.a	ENSGT00940000170135	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00940000163741
NAME_6	ANCESTRAL SPECIES	73	ENSGT00730000111139	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000154292.a.b.d.b	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00900000143203	ENSGT00940000165701	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565.p
Sailfin molly	MODERN SPECIES	476										erlec1 (ENSPLAG00000005582)	GPR75 (ENSPLAG00000005597)	PSME4 (ENSPLAG00000005679)	ENSPLAG00000005713	ENSPLAG00000005727	THBS2 (ENSPLAG00000005823)	agpat4 (ENSPLAG00000005858) ##22	ENSPLAG00000005872	ENSPLAG00000005951	kcnk1b (ENSPLAG00000005978)	SLC35F3 (ENSPLAG00000006013)	TARBP1 (ENSPLAG00000006044)	zgc:172136 (ENSPLAG00000006095)	fam135a (ENSPLAG00000006125)
Amazon molly	MODERN SPECIES	267	GOLGA4 (ENSPFOG00000015528)	KCNK12 (ENSPFOG00000015461)	msh6 (ENSPFOG00000015401)	ENSPFOG00000015304	FOXN2 (ENSPFOG00000015286)	ppp1r21 (ENSPFOG00000015194)	STON1 (ENSPFOG00000024314)	STON1 (ENSPFOG00000015176)	gtf2a1l (ENSPFOG00000015159)	LHCGR (ENSPFOG00000015093)	nrxn1b (ENSPFOG00000014655)	erlec1 (ENSPFOG00000014456)	GPR75 (ENSPFOG00000019996)	PSME4 (ENSPFOG00000014029)	THBS2 (ENSPFOG00000013623)	agpat4 (ENSPFOG00000013562) ##22	ENSPFOG00000013390	kcnk1b (ENSPFOG00000013354)	SLC35F3 (ENSPFOG00000013278)	ENSPFOG00000013269	TARBP1 (ENSPFOG00000013020)	zgc:172136 (ENSPFOG00000012967)	fam135a (ENSPFOG00000012899)	ENSPFOG00000012726	ENSPFOG00000012555	ENSPFOG00000023358	lmbrd1 (ENSPFOG00000012351)	ADGRB3 (ENSPFOG00000024033)	ADGRB3 (ENSPFOG00000011908)	ENSPFOG00000011888	ENSPFOG00000011881
Guppy	MODERN SPECIES	445	KCNK12 (ENSPREG00000023105)	msh6 (ENSPREG00000023099)	ENSPREG00000023095	FOXN2 (ENSPREG00000023092)	ppp1r21 (ENSPREG00000023082)	STON1 (ENSPREG00000023075)	gtf2a1l (ENSPREG00000023073)	LHCGR (ENSPREG00000023068)	ENSPREG00000023061	nrxn1b (ENSPREG00000023025)	erlec1 (ENSPREG00000022979)	GPR75 (ENSPREG00000022973)	PSME4 (ENSPREG00000022914)	ENSPREG00000022863	THBS2 (ENSPREG00000022838)	agpat4 (ENSPREG00000022826) ##22	ENSPREG00000022821	ENSPREG00000022799	kcnk1b (ENSPREG00000022780)	SLC35F3 (ENSPREG00000022773)	ENSPREG00000022764	TARBP1 (ENSPREG00000022753)	zgc:172136 (ENSPREG00000022743)	fam135a (ENSPREG00000022736)	col9a1b (ENSPREG00000022698)	ENSPREG00000022674	ENSPREG00000022669	lmbrd1 (ENSPREG00000022659)	ADGRB3 (ENSPREG00000022600)	ENSPREG00000022571	ENSPREG00000022561
Platyfish	MODERN SPECIES	14	KCNK12 (ENSXMAG00000010991)	msh6 (ENSXMAG00000010986)	ENSXMAG00000010970	FOXN2 (ENSXMAG00000022841)	ppp1r21 (ENSXMAG00000010942)	STON1 (ENSXMAG00000010933)	gtf2a1l (ENSXMAG00000021012)	LHCGR (ENSXMAG00000010925)	nrxn1b (ENSXMAG00000010885)	erlec1 (ENSXMAG00000010822)	GPR75 (ENSXMAG00000019900)	PSME4 (ENSXMAG00000010781)	ENSXMAG00000010767	ENSXMAG00000024878	THBS2 (ENSXMAG00000003209)	agpat4 (ENSXMAG00000009628) ##22	ENSXMAG00000009609	kcnk1b (ENSXMAG00000009607)	SLC35F3 (ENSXMAG00000009605)	ENSXMAG00000026609	TARBP1 (ENSXMAG00000009600)	zgc:172136 (ENSXMAG00000009593)	fam135a (ENSXMAG00000009591)	ENSXMAG00000009528	ENSXMAG00000027207	ENSXMAG00000024854	lmbrd1 (ENSXMAG00000013321)	ADGRB3 (ENSXMAG00000009430)	ENSXMAG00000009427	ENSXMAG00000027312	ENSXMAG00000020165
NAME_4	ANCESTRAL SPECIES	2	ENSGT00730000111139	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000154292.a.b.d	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00900000143203	ENSGT00940000165701	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158302.d.a	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00940000163741	ENSGT00940000160615.a.b
Sheepshead minnow	DUPLICATION
Sheepshead minnow	MODERN SPECIES	1455																agpat4 (ENSCVAG00000010866) ##22	ENSCVAG00000010894	ENSCVAG00000000917	kcnk1b (ENSCVAG00000011084)	SLC35F3 (ENSCVAG00000011107)	ENSCVAG00000011112	ENSCVAG00000011124
Sheepshead minnow	MODERN SPECIES	358	msh6 (ENSCVAG00000007560)	ENSCVAG00000007631	FOXN2 (ENSCVAG00000007647)	ppp1r21 (ENSCVAG00000007743)	STON1 (ENSCVAG00000007755)	gtf2a1l (ENSCVAG00000007845)	LHCGR (ENSCVAG00000007870)	ENSCVAG00000007886	nrxn1b (ENSCVAG00000007981)	erlec1 (ENSCVAG00000008105)	GPR75 (ENSCVAG00000008119)	PSME4 (ENSCVAG00000008232)	ENSCVAG00000008274	ENSCVAG00000008292	THBS2 (ENSCVAG00000008439)	agpat4 (ENSCVAG00000008480) ##22
Mummichog	MODERN SPECIES	1589	KCNK12 (ENSFHEG00000006249)	msh6 (ENSFHEG00000006256)	ENSFHEG00000006271	ENSFHEG00000006317	FOXN2 (ENSFHEG00000006340)	ppp1r21 (ENSFHEG00000006415)	STON1 (ENSFHEG00000006436)	gtf2a1l (ENSFHEG00000006445)	LHCGR (ENSFHEG00000006478)	nrxn1b (ENSFHEG00000006531)	erlec1 (ENSFHEG00000006565)	GPR75 (ENSFHEG00000006576)	PSME4 (ENSFHEG00000006708)	ENSFHEG00000006799	THBS2 (ENSFHEG00000006973)	agpat4 (ENSFHEG00000007012) ##22	ENSFHEG00000007039	ENSFHEG00000007230	kcnk1b (ENSFHEG00000007246)	SLC35F3 (ENSFHEG00000007283)	ENSFHEG00000007299	TARBP1 (ENSFHEG00000007565)	zgc:172136 (ENSFHEG00000007604)	fam135a (ENSFHEG00000000196)	ENSFHEG00000007630	col9a1b (ENSFHEG00000007680)	ENSFHEG00000007737	ENSFHEG00000007751	lmbrd1 (ENSFHEG00000007807)	ADGRB3 (ENSFHEG00000007896)	ENSFHEG00000007913
Tiger tail seahorse	MODERN SPECIES	177	ENSHCOG00000012708	FOXN2 (ENSHCOG00000012727)	ppp1r21 (ENSHCOG00000012808)	STON1 (ENSHCOG00000012828)	gtf2a1l (ENSHCOG00000012837)	LHCGR (ENSHCOG00000012870)	ENSHCOG00000012884	ENSHCOG00000012898	nrxn1b (ENSHCOG00000012949)	erlec1 (ENSHCOG00000013002)	GPR75 (ENSHCOG00000013014)	PSME4 (ENSHCOG00000013111)	ENSHCOG00000013150	ENSHCOG00000013170	THBS2 (ENSHCOG00000013278)	agpat4 (ENSHCOG00000013308) ##22	ENSHCOG00000013325	ENSHCOG00000013380	kcnk1b (ENSHCOG00000013403)	SLC35F3 (ENSHCOG00000000387)	ENSHCOG00000013432	ENSHCOG00000013439	zgc:172136 (ENSHCOG00000013456)	fam135a (ENSHCOG00000013500)	ENSHCOG00000013515	ENSHCOG00000013574	ENSHCOG00000013609	lmbrd1 (ENSHCOG00000013655)	ADGRB3 (ENSHCOG00000013744)	ENSHCOG00000013763	ENSHCOG00000013777
Pinecone sodierfish	MODERN SPECIES	6	KCNK12 (ENSMMDG00005006452)	msh6 (ENSMMDG00005006447)	ENSMMDG00005004823	FOXN2 (ENSMMDG00005004764)	ppp1r21 (ENSMMDG00005001381)	STON1 (ENSMMDG00005020429)	gtf2a1l (ENSMMDG00005020427)	LHCGR (ENSMMDG00005020392)	nrxn1b (ENSMMDG00005019785)	erlec1 (ENSMMDG00005019450)	GPR75 (ENSMMDG00005019444)	PSME4 (ENSMMDG00005019266)	ENSMMDG00005019255	ENSMMDG00005019254	THBS2 (ENSMMDG00005019253)	agpat4 (ENSMMDG00005019251) ##22	ENSMMDG00005019250	ENSMMDG00005013425	kcnk1b (ENSMMDG00005013338)	SLC35F3 (ENSMMDG00005013335)	ENSMMDG00005013332	TARBP1 (ENSMMDG00005013311)	zgc:172136 (ENSMMDG00005013293)	fam135a (ENSMMDG00005013183)	ENSMMDG00005013090	ENSMMDG00005013084	lmbrd1 (ENSMMDG00005010964)	ADGRB3 (ENSMMDG00005010935)	ENSMMDG00005010934	ENSMMDG00005010833	ENSMMDG00005010827
Cod	MODERN SPECIES	6	ENSGMOG00000015987	FOXN2 (ENSGMOG00000024029)	ppp1r21 (ENSGMOG00000016042)	STON1 (ENSGMOG00000016089)	gtf2a1l (ENSGMOG00000029158)	LHCGR (ENSGMOG00000016127)	NRXN1 (ENSGMOG00000016160)	erlec1 (ENSGMOG00000016227)	ENSGMOG00000037227	PSME4 (ENSGMOG00000016263)	ENSGMOG00000030751	ENSGMOG00000002432	ENSGMOG00000034186	ENSGMOG00000002380	ENSGMOG00000004422	agpat4 (ENSGMOG00000004460) ##22	ENSGMOG00000036811	ENSGMOG00000004476	kcnk1b (ENSGMOG00000034962)	ENSGMOG00000004533	TARBP1 (ENSGMOG00000004549)	zgc:172136 (ENSGMOG00000004632)	fam135a (ENSGMOG00000004667)	col9a1b (ENSGMOG00000004707)	ENSGMOG00000026294	lmbrd1 (ENSGMOG00000004837)	ADGRB3 (ENSGMOG00000004867)	ENSGMOG00000004933	ENSGMOG00000032180	ENSGMOG00000005043	KHDRBS2 (ENSGMOG00000005065)
Protacanthopterygii	ANCESTRAL SPECIES	4	ENSGT00730000111139	ENSGT00940000161424	ENSGT00550000075024	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00940000154292.a.b.d	ENSGT00940000177029.b	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00900000143203	ENSGT00940000165701	ENSGT00990000204854	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00990000208446	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D	ENSGT00950000183136.b.a.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	273									ENSGT00940000163055	ENSGT00940000157364.B.c	ENSGT00940000154292.a.b.d.h.a.b	ENSGT00530000063603.B.g	ENSGT00390000007723	ENSGT00390000011433.s.a.e	ENSGT00940000157846.c.d	ENSGT00950000182836.b.b.b.b.k ##22	ENSGT00990000204854.c	ENSGT00940000165701.h	ENSGT00940000155293.a.a.j	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00990000208446	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00940000157565	ENSGT00940000157935.b	ENSGT00940000158276	ENSGT00390000002581	ENSGT00940000155081.D.u.a	ENSGT00950000183136.b.a.a	ENSGT00940000165329
Huchen	MODERN SPECIES	956								ARHGAP4 (ENSHHUG00000021855)	cyhr1 (ENSHHUG00000021840)	ENSHHUG00000021829	pdcd6ip (ENSHHUG00000021764)	ubp1 (ENSHHUG00000021738)	clasp2 (ENSHHUG00000021342)	ENSHHUG00000021330	ENSHHUG00000020967	agpat4 (ENSHHUG00000020856) ##22	ENSHHUG00000020837	ENSHHUG00000020495	kcnk1b (ENSHHUG00000020486)	ENSHHUG00000020478
Salmoninae_a	ANCESTRAL SPECIES	109	ENSGT00830000128368.b.f	ENSGT00940000156503.v.b	ENSGT00730000111139.n	ENSGT00940000161424.k.b	ENSGT00530000063425.a.a.a.b.i.a.b	ENSGT00940000159118.h	ENSGT00390000006820.d	ENSGT00940000158817.f	ENSGT00940000163055	ENSGT00940000157364.B.c	ENSGT00940000154292.a.b.d.h.a.b	ENSGT00530000063603.B.g	ENSGT00390000007723	ENSGT00390000011433.s.a.e	ENSGT00940000157846.c.d	ENSGT00950000182836.b.b.b.b.k ##22	ENSGT00990000204854.c	ENSGT00940000165701.h	ENSGT00940000155293.a.a.j
Salmo	ANCESTRAL SPECIES	31	ENSGT00830000128368.b.f	ENSGT00940000156503.v.b	ENSGT00730000111139.n	ENSGT00940000161424.k.b	ENSGT00530000063425.a.a.a.b.i.a.b	ENSGT00940000159118.h	ENSGT00390000006820.d	ENSGT00940000158817.f	ENSGT00940000163055	ENSGT00940000157364.B.c	ENSGT00940000154292.a.b.d.h.a.b	ENSGT00530000063603.B.g	ENSGT00390000007723	ENSGT00390000011433.s.a.e	ENSGT00940000157846.c.d	ENSGT00950000182836.b.b.b.b.k ##22	ENSGT00990000204854.c	ENSGT00940000165701.h	ENSGT00940000155293.a.a.j	ENSGT00390000008727.a.a.d.e
River trout	MODERN SPECIES	9	ENSSTUG00000031680	gtf2a1l (ENSSTUG00000031656)	LHCGR (ENSSTUG00000031622)	ENSSTUG00000031614	ENSSTUG00000031598	ENSSTUG00000031581	ENSSTUG00000031573	NRXN1 (ENSSTUG00000029529)	ENSSTUG00000029465	erlec1 (ENSSTUG00000029257)	GPR75 (ENSSTUG00000029230)	PSME4 (ENSSTUG00000028118)	ENSSTUG00000028059	ENSSTUG00000028029	ENSSTUG00000027697	agpat4 (ENSSTUG00000027647) ##22	ENSSTUG00000027638	ENSSTUG00000021823	kcnk1b (ENSSTUG00000021658)	ENSSTUG00000021648	SLC35F3 (ENSSTUG00000021596)	ENSSTUG00000021589	ENSSTUG00000021549	ENSSTUG00000021467	zgc:172136 (ENSSTUG00000021444)	fam135a (ENSSTUG00000021088)	col9a1b (ENSSTUG00000021035)	ENSSTUG00000021030	lmbrd1 (ENSSTUG00000020101)	ADGRB3 (ENSSTUG00000020006)	zgc:171579 (ENSSTUG00000019995)
Atlantic salmon	MODERN SPECIES		ppp1r21 (ENSSSAG00000003694)	STON1 (ENSSSAG00000003728)	gtf2a1l (ENSSSAG00000088164)	LHCGR (ENSSSAG00000055360)	NRXN1 (ENSSSAG00000004275)	ERLEC1 (ENSSSAG00000043168)	PSME4 (ENSSSAG00000043370)	ENSSSAG00000101951	ENSSSAG00000015935	ENSSSAG00000103901	ENSSSAG00000103525	ENSSSAG00000091768	ENSSSAG00000092780	ENSSSAG00000025627	ENSSSAG00000047444	agpat4 (ENSSSAG00000056486) ##22	ENSSSAG00000056522	ENSSSAG00000056942	kcnk1b (ENSSSAG00000083691)	ENSSSAG00000086413	ENSSSAG00000118196	TARBP1 (ENSSSAG00000071969)	ENSSSAG00000100900	ENSSSAG00000093142	zgc:172136 (ENSSSAG00000071995)	fam135a (ENSSSAG00000096074)	col9a1b (ENSSSAG00000107756)	COL19A1 (ENSSSAG00000104188)	lmbrd1 (ENSSSAG00000086900)	ADGRB3 (ENSSSAG00000040332)	ENSSSAG00000040815
Oncorhynchus	ANCESTRAL SPECIES	17	ENSGT00940000156503.v.a.a	ENSGT00730000111139.n	ENSGT00940000161424.k.b	ENSGT00530000063425.a.a.a.b.i.a.b	ENSGT00940000159118.h	ENSGT00390000006820.d	ENSGT00940000158817.f	ENSGT00940000163055	ENSGT00940000157364.B.c	ENSGT00940000154292.a.b.d.h.a.b	ENSGT00940000154292.a.b.d.h.b.a	ENSGT00530000063603.B.g	ENSGT00390000007723	ENSGT00390000011433.s.a.e	ENSGT00940000157846.c.d	ENSGT00950000182836.b.b.b.b.k ##22	ENSGT00990000204854.c	ENSGT00940000165701.h	ENSGT00940000155293.a.a.j
Oncorhynchus_a	ANCESTRAL SPECIES	13	ENSGT00940000156503.v.a.a	ENSGT00730000111139.n	ENSGT00940000161424.k.b	ENSGT00530000063425.a.a.a.b.i.a.b	ENSGT00940000159118.h	ENSGT00390000006820.d	ENSGT00940000158817.f	ENSGT00940000163055	ENSGT00940000157364.B.c	ENSGT00940000154292.a.b.d.h.a.b	ENSGT00940000154292.a.b.d.h.b.a	ENSGT00530000063603.B.g	ENSGT00390000007723	ENSGT00390000011433.s.a.e	ENSGT00940000157846.c.d	ENSGT00950000182836.b.b.b.b.k ##22	ENSGT00990000204854.c	ENSGT00940000165701.h	ENSGT00940000155293.a.a.j
Chinook salmon	MODERN SPECIES	247														THBS2 (ENSOTSG00005046618)	ENSOTSG00005046613	agpat4 (ENSOTSG00005046611) ##22	ENSOTSG00005046609	ENSOTSG00005044509	kcnk1b (ENSOTSG00005044493)
Coho salmon	MODERN SPECIES	2	GOLGA4 (ENSOKIG00005046116)	KCNK12 (ENSOKIG00005046107)	ENSOKIG00005045208	ENSOKIG00005045119	PPP1R21 (ENSOKIG00005044830)	GTF2A1L (ENSOKIG00005044798)	LHCGR (ENSOKIG00005044786)	ENSOKIG00005044777	ENSOKIG00005044766	NRXN1 (ENSOKIG00005042525)	erlec1 (ENSOKIG00005042325)	GPR75 (ENSOKIG00005042312)	PSME4 (ENSOKIG00005036846)	ENSOKIG00005036450	ENSOKIG00005036434	agpat4 (ENSOKIG00005036311) ##22	ENSOKIG00005032275	kcnk1b (ENSOKIG00005032111)
Rainbow trout	MODERN SPECIES	15	ENSOMYG00000054114	ENSOMYG00000027535	ENSOMYG00000055620	erlec1 (ENSOMYG00000026232)	ENSOMYG00000026216	ENSOMYG00000077387	PSME4 (ENSOMYG00000025175)	ENSOMYG00000057002	ENSOMYG00000053929	ENSOMYG00000051807	ENSOMYG00000075183	ENSOMYG00000072637	ENSOMYG00000024583	ENSOMYG00000024407	ENSOMYG00000052981	agpat4 (ENSOMYG00000024323) ##22	ENSOMYG00000017912	ENSOMYG00000024398	kcnk1b (ENSOMYG00000017403)	ENSOMYG00000047935	ENSOMYG00000052628	ENSOMYG00000063374	ENSOMYG00000070525	ENSOMYG00000050151	ENSOMYG00000052782	zgc:172136 (ENSOMYG00000035204)	ENSOMYG00000049304	fam135a (ENSOMYG00000027568)	col9a1b (ENSOMYG00000051034)	ENSOMYG00000061236	ENSOMYG00000049984
Salmoninae	ANCESTRAL SPECIES	885														ENSGT00390000012017	ENSGT00940000157846.c.c	ENSGT00950000182836.b.b.b.b.l ##22	ENSGT00940000165701.g	ENSGT00990000204854.d	ENSGT00940000155293.a.a.i	ENSGT00940000165757.c.b.b
Salmoninae_a	ANCESTRAL SPECIES	38	ENSGT00940000156503.u	ENSGT00730000111139.m	ENSGT00940000161424.k.a	ENSGT00550000075024	ENSGT00530000063425.a.a.a.b.i.a.a	ENSGT00940000159118.g	ENSGT00390000006820.c	ENSGT00940000158817.e	ENSGT00940000157364.B.d	ENSGT00940000154292.a.b.d.h.a.a	ENSGT00940000177029.b	ENSGT00530000063603.B.h	ENSGT00390000011433.s.a.f	ENSGT00390000012017	ENSGT00940000157846.c.c	ENSGT00950000182836.b.b.b.b.l ##22	ENSGT00940000165701.g	ENSGT00990000204854.d	ENSGT00940000155293.a.a.i	ENSGT00940000165757.c.b.b	ENSGT00940000163723.A.f.a	ENSGT00510000049375.g	ENSGT00390000010434.b.d.b	ENSGT00950000182926.b.d.a.a.b.h	ENSGT00530000064017.a.f	ENSGT00940000157049.c.b.b	ENSGT00940000165452.a.h	ENSGT00940000157556.a.b.f	ENSGT00950000183082.b.b.a.a.d.b.a.b	ENSGT00950000183082.b.b.a.a.d.b.b	ENSGT00940000157525.b.d
Oncorhynchus	ANCESTRAL SPECIES	23	ENSGT00940000156503.u	ENSGT00730000111139.m	ENSGT00940000161424.k.a	ENSGT00550000075024	ENSGT00530000063425.a.a.a.b.i.a.a	ENSGT00940000159118.g	ENSGT00390000006820.c	ENSGT00940000158817.e	ENSGT00940000157364.B.d	ENSGT00940000154292.a.b.d.h.a.a	ENSGT00940000177029.b	ENSGT00530000063603.B.h	ENSGT00390000011433.s.a.f	ENSGT00390000012017	ENSGT00940000157846.c.c	ENSGT00950000182836.b.b.b.b.l ##22	ENSGT00940000165701.g	ENSGT00940000155293.a.a.i	ENSGT00940000165757.c.a.b	ENSGT01060000253683	ENSGT00510000049375.g	ENSGT00390000010434.b.d.b	ENSGT00950000182926.b.d.a.a.b.h	ENSGT00530000064017.a.f	ENSGT00940000157049.c.b.b	ENSGT00940000165452.a.h	ENSGT00940000157556.a.b.f	ENSGT00950000183082.b.b.a.a.d.b.b	ENSGT00940000157525.b.d	ENSGT00390000004874.a.a.ub	ENSGT00940000165889
Oncorhynchus_a	ANCESTRAL SPECIES	18	ENSGT00940000156503.u	ENSGT00730000111139.m	ENSGT00940000161424.k.a	ENSGT00550000075024	ENSGT00530000063425.a.a.a.b.i.a.a	ENSGT00940000159118.g	ENSGT00390000006820.c	ENSGT00940000158817.e	ENSGT00940000157364.B.d	ENSGT00940000154292.a.b.d.h.a.a	ENSGT00940000177029.b	ENSGT00530000063603.B.h	ENSGT00390000011433.s.a.f	ENSGT00390000012017	ENSGT00940000157846.c.c	ENSGT00950000182836.b.b.b.b.l ##22	ENSGT00940000165701.g	ENSGT00940000155293.a.a.i	ENSGT00940000165757.c.a.b	ENSGT01060000253683	ENSGT00510000049375.g	ENSGT00390000010434.b.d.b	ENSGT00950000182926.b.d.a.a.b.h	ENSGT00530000064017.a.f	ENSGT00940000157049.c.b.b	ENSGT00940000165452.a.h	ENSGT00940000157556.a.b.f	ENSGT00950000183082.b.b.a.a.d.b.b	ENSGT00940000157525.b.d	ENSGT00390000004874.a.a.ub	ENSGT00940000165889
Chinook salmon	MODERN SPECIES	17	KCNK12 (ENSOTSG00005017576)	msh6 (ENSOTSG00005017579)	ENSOTSG00005021282	FOXN2 (ENSOTSG00005021516)	ppp1r21 (ENSOTSG00005021526)	STON1 (ENSOTSG00005023892)	LHCGR (ENSOTSG00005023894)	NRXN1 (ENSOTSG00005023915)	ENSOTSG00005025370	ENSOTSG00005025372	erlec1 (ENSOTSG00005025375)	PSME4 (ENSOTSG00005026777)	ENSOTSG00005027450	ENSOTSG00005027451	THBS2 (ENSOTSG00005027465)	agpat4 (ENSOTSG00005029064) ##22	ENSOTSG00005029107	kcnk1b (ENSOTSG00005034403)	nkx3.3 (ENSOTSG00005034405)	nkx2.3 (ENSOTSG00005034407)	got1 (ENSOTSG00005034411)	CNNM1 (ENSOTSG00005034416)	HPSE2 (ENSOTSG00005034422)	ENSOTSG00005034426	st3gal7 (ENSOTSG00005034429)	morn4 (ENSOTSG00005034430)	ENSOTSG00005034432	slit1a (ENSOTSG00005034436)	XPO5 (ENSOTSG00005034518)	ENSOTSG00005034611	cpn1 (ENSOTSG00005034612)
Coho salmon	MODERN SPECIES	17	itga9 (ENSOKIG00005020483)	GOLGA4 (ENSOKIG00005020615)	KCNK12 (ENSOKIG00005020653)	msh6 (ENSOKIG00005006274)	ENSOKIG00005006542	FOXN2 (ENSOKIG00005006794)	ppp1r21 (ENSOKIG00005006947)	STON1 (ENSOKIG00005009449)	LHCGR (ENSOKIG00005009460)	NRXN1 (ENSOKIG00005009580)	ERLEC1 (ENSOKIG00005011136)	PSME4 (ENSOKIG00005012067)	ENSOKIG00005012249	ENSOKIG00005012263	THBS2 (ENSOKIG00005012323)	agpat4 (ENSOKIG00005012600) ##22	ENSOKIG00005012935	ENSOKIG00005018075	kcnk1b (ENSOKIG00005018080)	ENSOKIG00005018083	ENSOKIG00005018091	MARVELD1 (ENSOKIG00005018097)	ENSOKIG00005018101	ENSOKIG00005018154	ENSOKIG00005018168	slc25a28 (ENSOKIG00005018176)	nkx3.3 (ENSOKIG00005018199)	nkx2.3 (ENSOKIG00005018206)	got1 (ENSOKIG00005018218)	CNNM1 (ENSOKIG00005018273)	HPSE2 (ENSOKIG00005018314)
Rainbow trout	MODERN SPECIES	12	ENSOMYG00000029262	ENSOMYG00000029486	ENSOMYG00000030467	ENSOMYG00000032741	PPP1R21 (ENSOMYG00000033214)	ENSOMYG00000035787	LHCGR (ENSOMYG00000035803)	ENSOMYG00000035998	ENSOMYG00000052965	ENSOMYG00000058306	ENSOMYG00000049636	ERLEC1 (ENSOMYG00000036803)	ENSOMYG00000036954	ENSOMYG00000037387	ENSOMYG00000037486	agpat4 (ENSOMYG00000037674) ##22	ENSOMYG00000038592	kcnk1b (ENSOMYG00000043033)	ENSOMYG00000048427	ENSOMYG00000071543	ENSOMYG00000043047	ENSOMYG00000043052	ENSOMYG00000043076	ENSOMYG00000055904	slc25a28 (ENSOMYG00000043085)	nkx3.3 (ENSOMYG00000043095)	nkx2.3 (ENSOMYG00000043096)	got1 (ENSOMYG00000043106)	ENSOMYG00000043114	CNNM1 (ENSOMYG00000043115)	HPSE2 (ENSOMYG00000043124)
Salmo	ANCESTRAL SPECIES	38	ENSGT00940000157396.jc	ENSGT00940000156503.u	ENSGT00730000111139.m	ENSGT00940000161424.k.a	ENSGT00550000075024	ENSGT00530000063425.a.a.a.b.i.a.a	ENSGT00940000159118.g	ENSGT00390000006820.c	ENSGT00940000158817.e	ENSGT00940000157364.B.d	ENSGT00940000154292.a.b.d.h.a.a	ENSGT00530000063603.B.h	ENSGT00390000011433.s.a.f	ENSGT00390000012017	ENSGT00940000157846.c.c	ENSGT00950000182836.b.b.b.b.l ##22	ENSGT00940000165701.g	ENSGT00990000204854.d	ENSGT00940000155293.a.a.i	ENSGT00940000165757.c.b.b	ENSGT00940000163723.A.f.a	ENSGT00510000049375.g	ENSGT00390000010434.b.d.b	ENSGT00950000182926.b.d.a.a.b.h	ENSGT00530000064017.a.f	ENSGT00940000157049.c.b.a.a	ENSGT00940000165452.a.h	ENSGT00940000157556.a.b.f	ENSGT00950000183082.b.b.a.a.d.b.a.b	ENSGT00950000183082.b.b.a.a.d.b.b	ENSGT00940000157525.b.d
Atlantic salmon	MODERN SPECIES	20	itga9 (ENSSSAG00000040941)	ENSSSAG00000041544	ENSSSAG00000042206	ENSSSAG00000042313	ENSSSAG00000045454	ENSSSAG00000049879	ENSSSAG00000100373	ppp1r21 (ENSSSAG00000054096)	ENSSSAG00000057485	LHCGR (ENSSSAG00000057492)	NRXN1 (ENSSSAG00000057796)	ERLEC1 (ENSSSAG00000071732)	PSME4 (ENSSSAG00000071799)	ENSSSAG00000071904	thbs2 (ENSSSAG00000071980)	agpat4 (ENSSSAG00000072273) ##22	ENSSSAG00000072418	ENSSSAG00000075436	kcnk1b (ENSSSAG00000075442)	ENSSSAG00000110104	ENSSSAG00000099101	ENSSSAG00000088446	ENSSSAG00000083955	ENSSSAG00000075553	ENSSSAG00000101173	ENSSSAG00000122151	ENSSSAG00000105715	slc25a28 (ENSSSAG00000075557)	ENSSSAG00000090773	nkx3.3 (ENSSSAG00000111355)	nkx2.3 (ENSSSAG00000091368)
River trout	MODERN SPECIES	1	ENSSTUG00000010533	FOXN2 (ENSSTUG00000012050)	ppp1r21 (ENSSTUG00000012084)	STON1 (ENSSTUG00000013233)	LHCGR (ENSSTUG00000013262)	nrxn1b (ENSSTUG00000013680)	ENSSTUG00000015938	ENSSTUG00000015951	ENSSTUG00000015961	erlec1 (ENSSTUG00000015971)	ENSSTUG00000016069	ENSSTUG00000016224	ENSSTUG00000016231	THBS2 (ENSSTUG00000016312)	ENSSTUG00000018109	agpat4 (ENSSTUG00000018116) ##22	ENSSTUG00000018149	ENSSTUG00000018776	kcnk1b (ENSSTUG00000018792)	zgc:171482 (ENSSTUG00000018804)	ENSSTUG00000018821	ENSSTUG00000018828	marveld1 (ENSSTUG00000018853)	pi4k2a (ENSSTUG00000018858)	ENSSTUG00000018882	ENSSTUG00000018905	slc25a28 (ENSSTUG00000018986)	nkx3.3 (ENSSTUG00000019026)	nkx2.3 (ENSSTUG00000019037)	got1 (ENSSTUG00000019061)	CNNM1 (ENSSTUG00000019181)
Huchen	MODERN SPECIES	4729															ENSHHUG00000001329	agpat4 (ENSHHUG00000001300) ##22
Northern pike	MODERN SPECIES	4	mfsd13a (ENSELUG00000010231)	ENSELUG00000010344	msh6 (ENSELUG00000010431)	ENSELUG00000010499	FOXN2 (ENSELUG00000010538)	ppp1r21 (ENSELUG00000010645)	STON1 (ENSELUG00000010706)	gtf2a1l (ENSELUG00000034256)	LHCGR (ENSELUG00000010744)	nrxn1b (ENSELUG00000011068)	erlec1 (ENSELUG00000011166)	GPR75 (ENSELUG00000011209)	PSME4 (ENSELUG00000011276)	ENSELUG00000001497	THBS2 (ENSELUG00000000425)	agpat4 (ENSELUG00000011759) ##22	ENSELUG00000011781	ENSELUG00000011854	kcnk1b (ENSELUG00000000431)	SLC35F3 (ENSELUG00000012062)	ENSELUG00000012116	ENSELUG00000012130	TARBP1 (ENSELUG00000012193)	zgc:172136 (ENSELUG00000001042)	fam135a (ENSELUG00000012515)	col9a1b (ENSELUG00000012591)	ENSELUG00000012656	lmbrd1 (ENSELUG00000012697)	ADGRB3 (ENSELUG00000012763)	zgc:171579 (ENSELUG00000012792)	ENSELUG00000012900
Osteoglossiformes	ANCESTRAL SPECIES	18	ENSGT00390000018245.j	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.a.a.a	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.B	ENSGT00390000003855.a	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433.s.a.g	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00950000182836.b.b.b.b ##22	ENSGT00940000165701	ENSGT00900000143203	ENSGT00940000155293.a.a	ENSGT00390000008727.a.a.d	ENSGT00940000166602.B	ENSGT00390000003939	ENSGT00940000162787.c	ENSGT00950000183181.A.a	ENSGT00390000018436.a.b	ENSGT00390000000411	ENSGT00940000162996.c.b	ENSGT00940000155245	ENSGT00940000163216	ENSGT00990000204198	ENSGT00940000158288
Asian bonytongue	MODERN SPECIES	23	KCNK12 (ENSSFOG00015001638)	msh6 (ENSSFOG00015001648)	ENSSFOG00015001698	FOXN2 (ENSSFOG00015001820)	ppp1r21 (ENSSFOG00015001831)	STON1 (ENSSFOG00015001840)	ENSSFOG00015026862	LHCGR (ENSSFOG00015001859)	nrxn1b (ENSSFOG00015001893)	chac2 (ENSSFOG00015001968)	erlec1 (ENSSFOG00015001975)	GPR75 (ENSSFOG00015002045)	PSME4 (ENSSFOG00015002060)	ENSSFOG00015002220	ENSSFOG00015002253	agpat4 (ENSSFOG00015002397) ##22	ENSSFOG00015002445	kcnk1b (ENSSFOG00015002601)	SLC35F3 (ENSSFOG00015002610)	ENSSFOG00015026660	TARBP1 (ENSSFOG00015002660)	zgc:172136 (ENSSFOG00015002811)	dact2 (ENSSFOG00015002843)	SMOC2 (ENSSFOG00015002962)	ENSSFOG00015024709	ENSSFOG00015024416	eif3s6ip (ENSSFOG00015003021)	vsir (ENSSFOG00015002981)	ENSSFOG00015002998	cdh23 (ENSSFOG00015002723)	PLPP4 (ENSSFOG00015003004)
P. kingsleyae	MODERN SPECIES	254											erlec1 (ENSPKIG00000015930)	GPR75 (ENSPKIG00000015985)	PSME4 (ENSPKIG00000016022)	ENSPKIG00000016115	THBS2 (ENSPKIG00000016268)	agpat4 (ENSPKIG00000016403) ##22	ENSPKIG00000016485	ENSPKIG00000016618	kcnk1b (ENSPKIG00000016633)	SLC35F3 (ENSPKIG00000016654)	ENSPKIG00000016696	TARBP1 (ENSPKIG00000016716)	zgc:172136 (ENSPKIG00000016819)	dact2 (ENSPKIG00000016903)	SMOC2 (ENSPKIG00000016937)	eif3s6ip (ENSPKIG00000016998)	ENSPKIG00000017084	NDST2 (ENSPKIG00000017220)	CAMK2G (ENSPKIG00000017435)
Spotted gar	MODERN SPECIES	654	msh6 (ENSLOCG00000016298)	FBXO11 (ENSLOCG00000016294)	foxn2b (ENSLOCG00000016292)	ppp1r21 (ENSLOCG00000016286)	STON1 (ENSLOCG00000016284)	ENSLOCG00000016282	fshr (ENSLOCG00000016280)	nrxn1b (ENSLOCG00000016276)	ASB3 (ENSLOCG00000016273)	chac2 (ENSLOCG00000016270)	erlec1 (ENSLOCG00000016265)	GPR75 (ENSLOCG00000017362)	psme4b (ENSLOCG00000016250)	ENSLOCG00000016248	THBS2 (ENSLOCG00000016241)	agpat4 (ENSLOCG00000016235) ##22	MAP3K4 (ENSLOCG00000016223)	kcnk1a (ENSLOCG00000016222)	slc35f3a (ENSLOCG00000016220)	TARBP1 (ENSLOCG00000016214)	ENSLOCG00000016209	dact2 (ENSLOCG00000016207)	SMOC2 (ENSLOCG00000016200)	eif3s6ip (ENSLOCG00000016195)	asrgl1 (ENSLOCG00000016189)	RIMS1 (ENSLOCG00000016181)	KCNQ5 (ENSLOCG00000016173)	ddx43 (ENSLOCG00000016170)	CGAS (ENSLOCG00000016169)	eef1a1b (ENSLOCG00000016168)	slc17a5 (ENSLOCG00000016166)
Reedfish	MODERN SPECIES	6	ENSECRG00000020082	psme4b (ENSECRG00000020210)	ENSECRG00000020492	GPR75 (ENSECRG00000020497)	erlec1 (ENSECRG00000020509)	sft2d1 (ENSECRG00000020525)	PRR18 (ENSECRG00000020536)	TBXT (ENSECRG00000020538)	pde10a (ENSECRG00000020597)	C6orf118 (ENSECRG00000020742)	QKI (ENSECRG00000020754)	ENSECRG00000020765	ENSECRG00000020775	ENSECRG00000020783	PRKN (ENSECRG00000020796)	agpat4 (ENSECRG00000020821) ##22	MAP3K4 (ENSECRG00000020843)	kcnk1a (ENSECRG00000020915)	SLC35F3 (ENSECRG00000020926)	kat14 (ENSECRG00000020944)	dzank1 (ENSECRG00000020966)	polr3f (ENSECRG00000020993)	rbbp9 (ENSECRG00000021024)	ENSECRG00000012893	ENSECRG00000012900	ENSECRG00000012908	EPHX1 (ENSECRG00000012922)	mad2l1bp (ENSECRG00000012943)	gtpbp2b (ENSECRG00000012982)	polh (ENSECRG00000013060)	tp53bp2a (ENSECRG00000013093)
Elephant shark	MODERN SPECIES	1486	tmem30ab (ENSCMIG00000004191)	FILIP1 (ENSCMIG00000004228)	ENSCMIG00000004255	ENSCMIG00000004304	myo6a (ENSCMIG00000004379)	ENSCMIG00000004509	HTR1B (ENSCMIG00000004578)	ENSCMIG00000004581	ENSCMIG00000004585	ENSCMIG00000004599	QKI (ENSCMIG00000004620)	pacrg (ENSCMIG00000004628)	ENSCMIG00000004638	ENSCMIG00000004644	ENSCMIG00000004649	agpat4 (ENSCMIG00000004652) ##22	MAP3K4 (ENSCMIG00000004797)	ENSCMIG00000005096	ENSCMIG00000005172	ENSCMIG00000005330	ENSCMIG00000005336	ENSCMIG00000005344	ENSCMIG00000005346	slc22a2 (ENSCMIG00000005349)	ENSCMIG00000005352	igf2r (ENSCMIG00000005356)	mbnl1 (ENSCMIG00000005365)	P2RY1 (ENSCMIG00000005374)	ARHGEF26 (ENSCMIG00000005402)	dhx36 (ENSCMIG00000005505)	GPR149 (ENSCMIG00000005572)
Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000182836.b.b.a ##22
Cyclostomata	ANCESTRAL SPECIES	1276																ENSGT00950000182836.b.b.a ##22	ENSGT00390000018525.a.a
Lamprey	MODERN SPECIES	586											slc5a1 (ENSPMAG00000005357)	ENSPMAG00000005353	ENSPMAG00000005339	DEPDC5 (ENSPMAG00000005297)	ENSPMAG00000005294	ENSPMAG00000005289 ##22	ENSPMAG00000005263
Hagfish	MODERN SPECIES	46							ENSEBUG00000004319	ENSEBUG00000000380	SLC35F1 (ENSEBUG00000006214)	ENSEBUG00000013887	ENSEBUG00000011917	PTCHD1 (ENSEBUG00000003708)	ENSEBUG00000010171	ENSEBUG00000001289	ENSEBUG00000004313	ENSEBUG00000016478 ##22	sft2d1 (ENSEBUG00000013631)	ENSEBUG00000001652	ENSEBUG00000006077