Mus_A	ANCESTRAL SPECIES	11	ENSGT00950000183216.d.j.b.a #8	ENSGT00940000153523.b.b #9	ENSGT00950000183216.d.j.b.b ##8	ENSGT00940000162084 #10	ENSGT00940000159972 #11	ENSGT00390000003207 #12	ENSGT00940000162117 #13	ENSGT00940000162852.a #15	ENSGT01030000234635.a.a.a.b #16	ENSGT00940000158035 #17	ENSGT00940000154227.b #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT01050000248522	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00940000155183.e.c.b.a ##34	ENSGT00940000155183.e.c.b.b.a ##34	ENSGT00510000047718 #33	ENSGT00940000158193	ENSGT00950000182895.a.b.j
Mus_B	ANCESTRAL SPECIES	10	ENSGT00950000183216.d.j.b.a #8	ENSGT00940000153523.b.b #9	ENSGT00950000183216.d.j.b.b ##8	ENSGT00940000162084 #10	ENSGT00940000159972 #11	ENSGT00390000003207 #12	ENSGT00940000162117 #13	ENSGT00940000162852.a #15	ENSGT01030000234635.a.a.a.b #16	ENSGT00940000158035 #17	ENSGT00940000154227.b #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT01050000248522	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00510000047718 #33	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977	ENSGT01090000259987.a.a.a.c
Mus_C	ANCESTRAL SPECIES	7	ENSGT00940000163952.a.d	ENSGT00940000153523.b.a #7	ENSGT00950000183216.d.j.b.a #8	ENSGT00940000153523.b.b #9	ENSGT00940000162084 #10	ENSGT00940000159972 #11	ENSGT00390000003207 #12	ENSGT00940000162117 #13	ENSGT00940000162852.a #15	ENSGT01030000234635.a.a.a.b #16	ENSGT00940000158035 #17	ENSGT00940000154227.b #18	ENSGT00390000003874 #19	ENSGT00940000154826 #20	ENSGT00390000011821.b #21	ENSGT00950000182836.b.b.b.a #22	ENSGT00390000003873 #23	ENSGT00550000074981 #24	ENSGT00390000003706.a.a #25	ENSGT00940000161590 #26	ENSGT00940000162228 #27	ENSGT00940000161104 #28	ENSGT00940000159292 #29	ENSGT00390000018807	ENSGT00940000156404 #31	ENSGT00940000154360.A.b #32	ENSGT00940000155183.e.c.b.a ##34	ENSGT00510000047718 #33	ENSGT00940000155183.e.d.a.b #34	ENSGT00940000155183.f.a ##34	ENSGT00940000155183.e.c.b.b.b #35
Steppe mouse	MODERN SPECIES	3068	Or7a36 (ENSMSIG00000000611) #7	Or7a37 (ENSMSIG00000000592) #8	ENSMSIG00000000580 #9	Or7c70 (ENSMSIG00000000575) #10	Slc1a6 (ENSMSIG00000000543) #11	Ccdc105 (ENSMSIG00000000509) #12	Casp14 (ENSMSIG00000000458) #13	ENSMSIG00000000436 #14	Or1i2 (ENSMSIG00000000403) #15	Syde1 (ENSMSIG00000000382) #16	Ilvbl (ENSMSIG00000000223) #17	Or10b1 (ENSMSIG00000000154) #18	Pdxk (ENSMSIG00000000114) #19	Cstb (ENSMSIG00000026515) #20	Rrp1 (ENSMSIG00000026489) #21	Agpat3 (ENSMSIG00000026402) #22	Trappc10 (ENSMSIG00000026358) #23	Pwp2 (ENSMSIG00000026339) #24	Gatd3a (ENSMSIG00000026316) #25	Icosl (ENSMSIG00000026290) #26	Dnmt3l (ENSMSIG00000026239) #27	Aire (ENSMSIG00000025315) #28	Pfkl (ENSMSIG00000025294) #29	ENSMSIG00000025258 #30	Trpm2 (ENSMSIG00000025139) #31	ENSMSIG00000025134 #32	Tspear (ENSMSIG00000025116) #33	ENSMSIG00000025108 #34	Gm19668 (ENSMSIG00000025103) #35	Gm9639 (ENSMSIG00000025102) #36
spretus	MODERN SPECIES	1	Or7a37 (MGP_SPRETEiJ_G0016335) #8	Or7a39 (MGP_SPRETEiJ_G0016334) ##8	MGP_SPRETEiJ_G0016332 #9	MGP_SPRETEiJ_G0016333 #9	Or7c70 (MGP_SPRETEiJ_G0016331) #10	Slc1a6 (MGP_SPRETEiJ_G0016330) #11	Ccdc105 (MGP_SPRETEiJ_G0016329) #12	Casp14 (MGP_SPRETEiJ_G0016328) #13	Or1i2 (MGP_SPRETEiJ_G0016327) #15	Syde1 (MGP_SPRETEiJ_G0016326) #16	Ilvbl (MGP_SPRETEiJ_G0016325) #17	MGP_SPRETEiJ_G0016324	Pdxk (MGP_SPRETEiJ_G0016323) #19	Cstb (MGP_SPRETEiJ_G0016322) #20	Rrp1 (MGP_SPRETEiJ_G0016321) #21	Agpat3 (MGP_SPRETEiJ_G0016320) #22	Trappc10 (MGP_SPRETEiJ_G0016319) #23	Pwp2 (MGP_SPRETEiJ_G0016318) #24	Gatd3a (MGP_SPRETEiJ_G0016317) #25	Icosl (MGP_SPRETEiJ_G0016316) #26	Dnmt3l (MGP_SPRETEiJ_G0016315) #27	Aire (MGP_SPRETEiJ_G0016314) #28	Pfkl (MGP_SPRETEiJ_G0016313) #29	Cfap410 (MGP_SPRETEiJ_G0016312)	Trpm2 (MGP_SPRETEiJ_G0016311) #31	Lrrc3 (MGP_SPRETEiJ_G0016310) #32	MGP_SPRETEiJ_G0016309 ##34	Tspear (MGP_SPRETEiJ_G0016308) #33	MGP_SPRETEiJ_G0016307 ##34	Gm19668 (MGP_SPRETEiJ_G0016306) #35	Gm10100 (MGP_SPRETEiJ_G0016305)
Mouse	MODERN SPECIES	1	Or7a42 (ENSMUSG00000094080) #9	Or7a38 (ENSMUSG00000094673) #9	Or7a39 (ENSMUSG00000062873) ##8	Or7c70 (ENSMUSG00000051190) #10	Slc1a6 (ENSMUSG00000005357) #11	Ccdc105 (ENSMUSG00000078442) #12	Casp14 (ENSMUSG00000005355) #13	Or1i2 (ENSMUSG00000071185) #15	Syde1 (ENSMUSG00000032714) #16	Ilvbl (ENSMUSG00000032763) #17	Or10b1 (ENSMUSG00000107822) #18	Pdxk (ENSMUSG00000032788) #19	Cstb (ENSMUSG00000005054) #20	Rrp1 (ENSMUSG00000061032) #21	Gm56820 (ENSMUSG00000118646)	Agpat3 (ENSMUSG00000001211) #22	Trappc10 (ENSMUSG00000000374) #23	Pwp2 (ENSMUSG00000032834) #24	Gatd3a (ENSMUSG00000053329) #25	Icosl (ENSMUSG00000000732) #26	Dnmt3l (ENSMUSG00000000730) #27	Aire (ENSMUSG00000000731) #28	Pfkl (ENSMUSG00000020277) #29	Cfap410 (ENSMUSG00000020284)	Trpm2 (ENSMUSG00000009292) #31	Lrrc3 (ENSMUSG00000051652) #32	Gm3285 (ENSMUSG00000111915) ##34	Gm10318 (ENSMUSG00000071195) ##34	Gm36176 (ENSMUSG00000112653) ##34	Krtap10-10 (ENSMUSG00000112223) ##34	Krtap10-4 (ENSMUSG00000069582) ##34
Ryukyu mouse	MODERN SPECIES	1	Or7a36 (MGP_CAROLIEiJ_G0015522) #7	Or7a37 (MGP_CAROLIEiJ_G0015521) #8	MGP_CAROLIEiJ_G0015519 #9	Or7a39 (MGP_CAROLIEiJ_G0015520) ##8	Or7c70 (MGP_CAROLIEiJ_G0015518) #10	Slc1a6 (MGP_CAROLIEiJ_G0015517) #11	Ccdc105 (MGP_CAROLIEiJ_G0015516) #12	Casp14 (MGP_CAROLIEiJ_G0015515) #13	Or1i2 (MGP_CAROLIEiJ_G0015514) #15	Syde1 (MGP_CAROLIEiJ_G0015513) #16	Ilvbl (MGP_CAROLIEiJ_G0015512) #17	MGP_CAROLIEiJ_G0015511	Pdxk (MGP_CAROLIEiJ_G0015510) #19	Cstb (MGP_CAROLIEiJ_G0015509) #20	Rrp1 (MGP_CAROLIEiJ_G0015508) #21	Agpat3 (MGP_CAROLIEiJ_G0015507) #22	Trappc10 (MGP_CAROLIEiJ_G0015506) #23	Pwp2 (MGP_CAROLIEiJ_G0015505) #24	Gatd3a (MGP_CAROLIEiJ_G0015504) #25	Icosl (MGP_CAROLIEiJ_G0015503) #26	Dnmt3l (MGP_CAROLIEiJ_G0015502) #27	Aire (MGP_CAROLIEiJ_G0015501) #28	Pfkl (MGP_CAROLIEiJ_G0015500) #29	Cfap410 (MGP_CAROLIEiJ_G0015499)	MGP_CAROLIEiJ_G0015498 #31	Lrrc3 (MGP_CAROLIEiJ_G0015497) #32	Tspear (MGP_CAROLIEiJ_G0015496) #33	Krtap10-10 (MGP_CAROLIEiJ_G0015495) ##34	MGP_CAROLIEiJ_G0015494 ##34	Gm19668 (MGP_CAROLIEiJ_G0015493) #35	MGP_CAROLIEiJ_G0015492 ##34