Cyprinoidei	ANCESTRAL SPECIES	83	ENSGT00950000182893.a.a.b.a	ENSGT00940000158901	ENSGT00940000155006.e.b.b	ENSGT00730000111114	ENSGT00940000156917.a #11	ENSGT00530000063829.C.b #12	ENSGT00940000154681.b.c #13	ENSGT00390000000155.b.a #16	ENSGT00550000074878 #17	ENSGT00940000157723.d #18	ENSGT00940000155482 #19	ENSGT01030000235096	ENSGT00940000159588	ENSGT01100000263547.a.b.b.a.a.a.a.a #20	ENSGT00940000160357 #21	ENSGT00390000007586.a.b #22	ENSGT00940000158340 #23	ENSGT00950000183177.a.b.a	ENSGT00940000167983	ENSGT00940000162200.a.a	ENSGT00940000153467.a.a.fc.a	ENSGT00390000010101	ENSGT00950000183204.b.b.a	ENSGT00940000157064.a.b.b.a.a.q	ENSGT00940000157064.a.b.a	ENSGT00390000004674.j	ENSGT00390000004674.i.b	ENSGT00940000157607	ENSGT00550000075121	ENSGT01050000244939.a.a.b.a.b.d
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	459	ENSGT00940000164679.eb.d.b.a	ENSGT00530000063956.a	ENSGT00950000182909.b.b.a.f	ENSGT00940000160486.c.c	ENSGT00950000182893.a.a.b.a.a	ENSGT00940000158901.e	ENSGT00730000111114.c	ENSGT00940000156917.a.b #11	ENSGT00530000063829.C.b.a.b ##12	ENSGT00940000154681.b.c.a #13	ENSGT01100000263529.a.a.a.a.a.a.a.b.b.b.a.b.b.a.a	ENSGT00390000000155.b.a.c #16	ENSGT00550000074878 #17	ENSGT00940000157723.d.c #18	ENSGT00940000160357.e.a #21	ENSGT00390000007586.a.b.a #22	ENSGT00940000158340.g #23
Cyprininae_a	ANCESTRAL SPECIES	367	ENSGT00950000182893.a.a.b.a.a	ENSGT00940000158901.e	ENSGT00940000155006.e.b.b	ENSGT00730000111114.c	ENSGT00940000156917.a.b #11	ENSGT00530000063829.C.b.a.b ##12	ENSGT00940000154681.b.c.a #13	ENSGT01100000263529.a.a.a.a.a.a.a.b.b.b.a.b.b.a.a	ENSGT00390000000155.b.a.c #16	ENSGT00550000074878.ob #17	ENSGT00940000157723.d.c #18	ENSGT00940000155482.b #19	ENSGT00940000159588.e	ENSGT01100000263547.a.b.b.a.a.a.a.a #20	ENSGT00940000160357.e.a #21	ENSGT00390000007586.a.b.a #22	ENSGT00940000158340.g #23
Golden-line barbel	MODERN SPECIES	658					GGT7 (ENSSGRG00000024667) #11	ENSSGRG00000024666 #12	snai1b (ENSSGRG00000024665) #13	ENSSGRG00000024664 #14	ENSSGRG00000024663 #15	PRSS35 (ENSSGRG00000024661) #16	tcp1 (ENSSGRG00000024470) #17	PLEKHG1 (ENSSGRG00000024408) #18	ENSSGRG00000024404 #19	ENSSGRG00000024402 #20	CPEB2 (ENSSGRG00000023999) #21	ndnf (ENSSGRG00000023988) #22	prdm5 (ENSSGRG00000023987) #23
Common carp reference	MODERN SPECIES	11	ENSCCRG00000082092	ENSCCRG00000071709 #11	ENSCCRG00000075756 ##12	snai1b (ENSCCRG00000022786) #13	ENSCCRG00000039558	ENSCCRG00000074563	ENSCCRG00000059595	ENSCCRG00000076275	tcp1 (ENSCCRG00000022560) #17	ENSCCRG00000070429 #16	ENSCCRG00000022612 #18	ENSCCRG00000060531 ##19	ENSCCRG00000013509	ENSCCRG00000033104 #20	CPEB2 (ENSCCRG00000073539) #21	ndnf (ENSCCRG00000055993) #22	prdm5 (ENSCCRG00000022853) #23	ENSCCRG00000042344	ENSCCRG00000074702	ENSCCRG00000078021	ENSCCRG00000063533	ENSCCRG00000073881	fbxo30b (ENSCCRG00000042336)	ENSCCRG00000042350	ENSCCRG00000002753	stxbp3 (ENSCCRG00000002710)	rabggta (ENSCCRG00000036441)	ENSCCRG00000063372	ENSCCRG00000070914	ENSCCRG00000079858	ENSCCRG00000065319
Cyprininae	ANCESTRAL SPECIES	168	ENSGT00950000182893.a.a.b.a.b	ENSGT00940000158901.f	ENSGT00940000155006.e.b.b	ENSGT00730000111114.d	ENSGT00940000156917.a.a ##11	ENSGT00530000063829.C.b.b ##12	ENSGT00940000154681.b.c.b ##13	ENSGT00390000000155.b.a.d ##16	ENSGT00940000157723.d.d ##18	ENSGT00940000155482 #19	ENSGT00940000159588.e	ENSGT01100000263547.a.b.b.a.a.a.a.a #20	ENSGT01030000235096	ENSGT00940000159588.f	ENSGT00940000160357.e.b ##21	ENSGT00390000007586.a.b.b ##22	ENSGT00940000158340.h ##23	ENSGT00950000183177.a.b.a.e	ENSGT00940000167983	ENSGT00940000162200.a.a	ENSGT00940000153467.a.a.fc.a	ENSGT00390000010101	ENSGT00950000183204.b.b.a.h	ENSGT00940000157064.a.b.b.a.a.q	ENSGT00390000004674.i.b.b	ENSGT00940000157607.d	ENSGT00550000075121.b	ENSGT01050000244939.a.a.b.a.b.d	ENSGT00940000161589.c	ENSGT00940000155218.A.d.a.e	ENSGT00940000155218.A.d.b.a
Cyprininae_a	ANCESTRAL SPECIES	79	ENSGT00940000156142	ENSGT00390000004786.g.a	ENSGT00950000182893.a.a.b.a.b	ENSGT00940000158901.f	ENSGT00390000003058.b.a.b.l	ENSGT00730000111114.d	ENSGT00940000156917.a.a ##11	ENSGT00530000063829.C.b.b ##12	ENSGT00940000154681.b.c.b ##13	ENSGT00390000000155.b.a.d ##16	ENSGT00550000074878.nb ##17	ENSGT00940000157723.d.d ##18	ENSGT00940000155482.a.a ##19	ENSGT00940000159588.f	ENSGT00940000160357.e.b ##21	ENSGT00390000007586.a.b.b ##22	ENSGT00940000158340.h ##23	ENSGT00950000183177.a.b.a.e	ENSGT00950000183177.a.b.a.f	ENSGT00940000167983	ENSGT00940000162200.a.a	ENSGT00940000153467.a.a.fc.a	ENSGT00390000010101	ENSGT00950000183204.b.b.a.h	ENSGT00940000157064.a.b.b.a.a.q.b	ENSGT00390000004674.i.b.b	ENSGT00940000157607.d	ENSGT00550000075121.b	ENSGT01050000244939.a.a.b.a.b.d	ENSGT00940000163807	ENSGT00940000161589.c
Golden-line barbel	MODERN SPECIES	363								TP53INP2 (ENSSGRG00000034395) ##12	snai1b (ENSSGRG00000034394) ##13	ENSSGRG00000034393	tcp1 (ENSSGRG00000033620) ##17	PLEKHG1 (ENSSGRG00000033598) ##18	CC2D2A (ENSSGRG00000033591) ##19	C1QTNF7 (ENSSGRG00000033587)	CPEB2 (ENSSGRG00000033580) ##21	ndnf (ENSSGRG00000033575) ##22	ENSSGRG00000033572	prdm5 (ENSSGRG00000033569) ##23	slc34a2b (ENSSGRG00000033567)	psmb11b (ENSSGRG00000033564)	UTRN (ENSSGRG00000032806)
Common carp reference	MODERN SPECIES	49	plcg1 (ENSCCRG00000060325)	ENSCCRG00000076996	ENSCCRG00000056902 ##11	ENSCCRG00000071710 ##12	snai1b (ENSCCRG00000024135) ##13	ENSCCRG00000065015 ##16	tcp1 (ENSCCRG00000067021) ##17	ENSCCRG00000061091	ENSCCRG00000070334	ENSCCRG00000029020 ##18	ENSCCRG00000070182	CC2D2A (ENSCCRG00000030164) ##19	ENSCCRG00000064419	CPEB2 (ENSCCRG00000065707) ##21	ENSCCRG00000068117	ndnf (ENSCCRG00000082518) ##22	prdm5 (ENSCCRG00000022838) ##23	ENSCCRG00000056131	ENSCCRG00000009434	ENSCCRG00000044025	ENSCCRG00000079354	ENSCCRG00000058773	ENSCCRG00000064920	ENSCCRG00000028820	fbxo30b (ENSCCRG00000075189)	ENSCCRG00000055101	ENSCCRG00000073110	stxbp3 (ENSCCRG00000044037)	rabggta (ENSCCRG00000044086)	ENSCCRG00000080140	ENSCCRG00000036429
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	15	rab5if (ENSCARG00000013958)	zhx3b (ENSCARG00000013954)	plcg1 (ENSCARG00000013028)	TOP1 (ENSCARG00000012904)	ENSCARG00000012843	GGT7 (ENSCARG00000012143) ##11	TP53INP2 (ENSCARG00000012126) ##12	snai1b (ENSCARG00000012120) ##13	PRSS35 (ENSCARG00000012115) ##16	tcp1 (ENSCARG00000011994) #17	PLEKHG1 (ENSCARG00000011944) ##18	CC2D2A (ENSCARG00000011654) #19	ENSCARG00000011642	C1QTNF7 (ENSCARG00000011637)	CPEB2 (ENSCARG00000011220) ##21	ndnf (ENSCARG00000011190) ##22	prdm5 (ENSCARG00000011170) ##23	slc34a2b (ENSCARG00000010136)	ENSCARG00000010060	psmb11b (ENSCARG00000010046)	EPM2A (ENSCARG00000009885)	fbxo30b (ENSCARG00000009881)	ENSCARG00000009871	stxbp3 (ENSCARG00000009436)	TGM1 (ENSCARG00000009370)	ENSCARG00000009362	ENSCARG00000009337	ENSCARG00000009335	ENSCARG00000009331	ENSCARG00000009320	ENSCARG00000009318
Goldfish	MODERN SPECIES	57	rnf114 (ENSCARG00000028192)	mafba (ENSCARG00000028185)	rab5if (ENSCARG00000028182)	zhx3b (ENSCARG00000028175)	plcg1 (ENSCARG00000026709)	ENSCARG00000026627	NCOA6 (ENSCARG00000026591)	GGT7 (ENSCARG00000026523) #11	ENSCARG00000026503 #12	snai1b (ENSCARG00000026486) ##13	ENSCARG00000026478	tcp1 (ENSCARG00000026367) #17	PLEKHG1 (ENSCARG00000026347) #18	ENSCARG00000026334 #20	CPEB2 (ENSCARG00000025691) #21	ndnf (ENSCARG00000025663) ##22	prdm5 (ENSCARG00000025578) #23	syn2a (ENSCARG00000025554)	raf1a (ENSCARG00000023115)	cnbpa (ENSCARG00000023017)	ENSCARG00000023009	ENSCARG00000023008	ENSCARG00000023007	IQSEC1 (ENSCARG00000022953)	NUP210 (ENSCARG00000022906)	ENSCARG00000022902	MTG2 (ENSCARG00000022892)	ogfr (ENSCARG00000022882)	col9a3 (ENSCARG00000022858)	hm13 (ENSCARG00000022451)	samhd1 (ENSCARG00000022425)
Zebrafish	MODERN SPECIES	15	zhx3b (ENSDARG00000019774)	plcg1 (ENSDARG00000038442)	TOP1 (ENSDARG00000086775)	zgc:114123 (ENSDARG00000044956)	ENSDARG00000071272	ENSDARG00000115082	GGT7 (ENSDARG00000115805) #11	ENSDARG00000109769 #12	snai1b (ENSDARG00000046019) #13	PRSS35 (ENSDARG00000059081) #16	tcp1 (ENSDARG00000017891) #17	ENSDARG00000111585 #18	CC2D2A (ENSDARG00000090971) #19	C1QTNF7 (ENSDARG00000074949)	CPEB2 (ENSDARG00000052604) #21	ndnf (ENSDARG00000062936) #22	prdm5 (ENSDARG00000006288) #23	TGM1 (ENSDARG00000017799)	rabggta (ENSDARG00000061024)	stxbp3 (ENSDARG00000008142)	ENSDARG00000108006	ENSDARG00000075676	fbxo30b (ENSDARG00000019311)	EPM2A (ENSDARG00000059044)	ENSDARG00000098793	UTRN (ENSDARG00000100222)	psmb11b (ENSDARG00000068086)	slc34a2b (ENSDARG00000036864)	ENSDARG00000093367	zgc:113423 (ENSDARG00000058978)	ENSDARG00000093496