Chordata ANCESTRAL SPECIES ENSGT00940000154457 #22 Vertebrata ANCESTRAL SPECIES ENSGT00940000154457 #22 Gnathostomata DUPLICATION Gnathostomata DUPLICATION Gnathostomata ANCESTRAL SPECIES ENSGT00940000154457.a.a #22 Euteleostomi ANCESTRAL SPECIES 1278 ENSGT00940000154457.a.b ##22 ENSGT00940000154457.a.a #22 Actinopterygii ANCESTRAL SPECIES 230 ENSGT00940000161997.b ENSGT00390000005536 ENSGT00390000001138.a ENSGT00390000003749 ENSGT00730000111107 ENSGT00940000158593 ENSGT00390000016940.c.a ENSGT00390000015124 ENSGT00940000160203 ENSGT00940000154457.a.b ##22 ENSGT00940000154457.a.a #22 ENSGT00950000182825.A.a.b.a.b.a.b ##21 ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.b ##21 ENSGT00950000183188.A.a #20 ENSGT00940000159517 ENSGT00940000160756 Neopterygii ANCESTRAL SPECIES 71 ENSGT00390000002174.a ENSGT00940000155637 ENSGT00950000183178.a ENSGT00390000013978.d ENSGT00940000156785 ENSGT00940000161997.b ENSGT00390000005536 ENSGT00390000001138.a ENSGT00390000003749 ENSGT00730000111107 ENSGT00940000158593 ENSGT00390000016940.c.a ENSGT00390000015124 ENSGT00940000160203 ENSGT00940000154457.a.b ##22 ENSGT00940000154457.a.a #22 ENSGT00950000182825.A.a.b.a.b.a.b ##21 ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.b ##21 ENSGT00950000183188.A.a #20 ENSGT00940000159517 Osteoglossocephalai ANCESTRAL SPECIES 45 ENSGT00390000003749 ENSGT00940000158593.a ENSGT00390000016940.c.a.b ENSGT00390000015124 ENSGT00940000160203 ENSGT00940000154457.a.b ##22 ENSGT00940000154457.a.a #22 ENSGT00950000182825.A.a.b.a.b.a.b ##21 ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.b ##21 ENSGT00950000183188.A.a #20 ENSGT00940000159517 ENSGT00940000159587 ENSGT01040000240451.a.b.a #14 ENSGT00940000155330.c ENSGT00940000161297 ENSGT00950000182905.a.a.b ENSGT00390000017840 ENSGT00940000158208.a.b ##13 ENSGT00940000154770 ENSGT00940000160351 Clupeocephala DUPLICATION Clupeocephala DUPLICATION Clupeocephala ANCESTRAL SPECIES 1094 ENSGT00950000182825.A.a.b.a.b.a.a.b #21 ENSGT00940000154457.a.a.a.b #22 Euteleosteomorpha DUPLICATION Euteleosteomorpha DUPLICATION Euteleosteomorpha ANCESTRAL SPECIES 854 ENSGT00950000182825.A.a.b.a.b.a.a.b #21 ENSGT00940000154457.a.a.a.b.a.a #22 Protacanthopterygii DUPLICATION Protacanthopterygii ANCESTRAL SPECIES 628 ENSGT00950000182825.A.a.b.a.b.a.a.b #21 ENSGT00940000154457.a.a.a.b.a.a.a #22 Salmoninae ANCESTRAL SPECIES 2196 ENSGT00950000182825.A.a.b.a.b.a.a.b #21 ENSGT00940000154457.a.a.a.b.a.a.a #22 Salmoninae_a ANCESTRAL SPECIES 1059 ENSGT00950000182825.A.a.b.a.b.a.a.b #21 ENSGT00940000154457.a.a.a.b.a.a.a #22 Oncorhynchus ANCESTRAL SPECIES 881 ENSGT00950000182825.A.a.b.a.b.a.a.b #21 ENSGT00940000154457.a.a.a.b.a.a.a #22 Oncorhynchus_a ANCESTRAL SPECIES 968 ENSGT00950000182825.A.a.b.a.b.a.a.b #21 ENSGT00940000154457.a.a.a.b.a.a.a #22 Chinook salmon MODERN SPECIES 7 lima1a (ENSOTSG00005009916) #7 igfbp6b (ENSOTSG00005009915) #8 ENSOTSG00005009828 #9 gpr182 (ENSOTSG00005009827) #10 ENSOTSG00005009826 #11 agap2 (ENSOTSG00005005733) #12 ENSOTSG00005005721 #13 ctdsp2 (ENSOTSG00005005719) #14 TMBIM6 (ENSOTSG00005005718) #15 ENSOTSG00005005717 #16 ccnt1 (ENSOTSG00005005716) #17 ccnt1 (ENSOTSG00005005714) #18 ENSOTSG00005005705 #19 pmelb (ENSOTSG00005005702) #20 ENSOTSG00005005701 #21 TUBA4B (ENSOTSG00005005700) #22 ENSOTSG00005005699 #23 jph2 (ENSOTSG00005005698) #24 GDAP1L1 (ENSOTSG00005005696) #25 fitm2 (ENSOTSG00005005694) #26 R3HDML (ENSOTSG00005005692) #27 hnf4a (ENSOTSG00005005667) #28 ttpal (ENSOTSG00005028588) #29 pkig (ENSOTSG00005028587) #30 ENSOTSG00005028586 #31 ada (ENSOTSG00005027934) #32 ccn5 (ENSOTSG00005027933) #33 pfkfb1 (ENSOTSG00005024375) #34 ENSOTSG00005023923 #35 gdi1 (ENSOTSG00005023907) #36 atp6ap1b (ENSOTSG00005023905) #37 Coho salmon MODERN SPECIES 8 znf740b (ENSOKIG00005031596) ENSOKIG00005031581 #7 ENSOKIG00005031575 ENSOKIG00005043023 #9 gpr182 (ENSOKIG00005042975) #10 ENSOKIG00005042968 #11 agap2 (ENSOKIG00005041804) #12 MARCHF9 (ENSOKIG00005041712) #13 ctdsp2 (ENSOKIG00005041686) #14 TMBIM6 (ENSOKIG00005041653) #15 ENSOKIG00005041627 #16 CCNT1 (ENSOKIG00005041583) #17 ENSOKIG00005041445 #19 pmelb (ENSOKIG00005041373) #20 ENSOKIG00005041338 ##21 TUBA4B (ENSOKIG00005041249) #22 tuba1b (ENSOKIG00005041233) ##21 jph2 (ENSOKIG00005041215) #24 fitm2 (ENSOKIG00005041202) #26 ENSOKIG00005041168 ##25 hnf4a (ENSOKIG00005040952) #28 ttpal (ENSOKIG00005040897) #29 pkig (ENSOKIG00005040874) #30 ada (ENSOKIG00005040663) #32 ccn5 (ENSOKIG00005040624) #33 pfkfb1 (ENSOKIG00005038187) #34 ENSOKIG00005038005 #35 gdi1 (ENSOKIG00005037902) ##36 atp6ap1b (ENSOKIG00005037834) #37 TAF8 (ENSOKIG00005037731) ENSOKIG00005037695 Protacanthopterygii ANCESTRAL SPECIES 6 ENSGT00940000158956.c #12 ENSGT00940000160351.e ENSGT00940000158208.a.a #13 ENSGT00940000155330.b ENSGT01040000240451.a.b.a.b.b #14 ENSGT01050000244940.a.a.g.b #15 ENSGT00530000063607.a #16 ENSGT00940000155808 ENSGT00940000159544.j ##17 ENSGT00940000159544.i #17 ENSGT00390000002944.d #19 ENSGT00950000183188.A.a.b #20 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.a.a.a ##21 ENSGT00940000154457.a.a.b ##22 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00940000154457.a.a.a.b.a.a.b #23 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.b ##21 ENSGT00940000159411.b #24 ENSGT00940000160178 #25 ENSGT00530000063693.b #26 ENSGT00940000161086 #27 ENSGT00940000157965.d #28 ENSGT00940000155407 #29 ENSGT00390000002707 #30 ENSGT00950000183113.a.b #32 ENSGT00940000160207.b #33 ENSGT00940000155094.b ENSGT00940000166720.d ENSGT00950000182835.c.c.g.b #34 ENSGT00940000162980 #35 ENSGT00950000182994.B.a.a.a.f #36 Salmoninae ANCESTRAL SPECIES 113 ENSGT00940000160528.b.d #8 ENSGT00940000156890.a.b.g #9 ENSGT00940000154307.D.i.b #10 ENSGT00940000160722.e #11 ENSGT00940000158956.c.h #12 ENSGT00940000158208.a.a.e #13 ENSGT01040000240451.a.b.a.b.b.b #14 ENSGT01050000244940.a.a.g.b.a #15 ENSGT00530000063607.a.m.a #16 ENSGT00940000159544.i #17 ENSGT00390000002944.d.b #19 ENSGT00950000183188.A.a.b.c #20 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.a.a.a.b ##21 ENSGT00940000154457.a.a.a.b.a.a.b #23 ENSGT00940000159411.b.`c.a #24 ENSGT00940000160178.e.a #25 ENSGT00530000063693.b.j #26 ENSGT00940000161086.f #27 ENSGT00940000157965.d.d #28 ENSGT00940000155407.i #29 ENSGT00390000002707.t #30 ENSGT00950000183113.a.b.e #32 ENSGT00940000160207.b.f #33 ENSGT00940000155094.b.a ENSGT00950000182835.c.c.g.b.g #34 ENSGT00940000162980.k #35 ENSGT00950000182994.B.a.a.a.f #36 ENSGT00940000156650.i.e #37 ENSGT00390000017567.q Salmoninae_a ANCESTRAL SPECIES 27 ENSGT00940000159609.n.b ENSGT00940000158313.a.b.c #7 ENSGT00940000160528.b.d #8 ENSGT00940000156890.a.b.g #9 ENSGT00940000154307.D.i.b #10 ENSGT00940000160722.e #11 ENSGT00940000158956.c.h #12 ENSGT00940000158208.a.a.e #13 ENSGT01040000240451.a.b.a.b.b.b #14 ENSGT01050000244940.a.a.g.b.a #15 ENSGT00530000063607.a.m.a #16 ENSGT00940000159544.i #17 ENSGT00390000002944.d.b #19 ENSGT00950000183188.A.a.b.c #20 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.a.a.a.a.b ##21 ENSGT00940000154457.a.a.a.b.a.a.b #23 ENSGT00940000159411.b.`c.a #24 ENSGT00940000160178.e.a #25 ENSGT00530000063693.b.j #26 ENSGT00940000161086.f #27 ENSGT00940000157965.d.d #28 ENSGT00940000155407.i #29 ENSGT00390000002707.t #30 ENSGT00950000183113.a.b.e #32 ENSGT00940000160207.b.f #33 ENSGT00940000155094.b.a ENSGT00950000182835.c.c.g.b.g #34 ENSGT00940000162980.k #35 ENSGT00950000182994.B.a.a.a.f #36 ENSGT00940000156650.i.e #37 ENSGT00390000017567.q Oncorhynchus ANCESTRAL SPECIES 20 ENSGT00940000159609.n.b ENSGT00940000158313.a.b.c #7 ENSGT00940000160528.b.d #8 ENSGT00940000156890.a.b.g #9 ENSGT00940000154307.D.i.b #10 ENSGT00940000160722.e #11 ENSGT00940000158956.c.h #12 ENSGT00940000158208.a.a.e #13 ENSGT01040000240451.a.b.a.b.b.b #14 ENSGT01050000244940.a.a.g.b.a #15 ENSGT00530000063607.a.m.a #16 ENSGT00940000159544.i #17 ENSGT00390000002944.d.b #19 ENSGT00950000183188.A.a.b.c #20 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.a.a.a.b ##21 ENSGT00940000154457.a.a.a.b.a.a.b #23 ENSGT00940000159411.b.`c.a #24 ENSGT00940000160178.e.a #25 ENSGT00530000063693.b.j #26 ENSGT00940000161086.f #27 ENSGT00940000157965.d.d #28 ENSGT00940000155407.i #29 ENSGT00390000002707.t #30 ENSGT00950000183113.a.b.e #32 ENSGT00940000160207.b.f #33 ENSGT00950000182835.c.c.g.b.g #34 ENSGT00940000162980.k #35 ENSGT00950000182994.B.a.a.a.f.b ##36 ENSGT00940000156650.i.e #37 ENSGT00390000017567.q ENSGT00390000005294.a.b Oncorhynchus_a ANCESTRAL SPECIES 7 ENSGT00940000159609.n.b ENSGT00940000158313.a.b.c #7 ENSGT00940000160528.b.d #8 ENSGT00940000156890.a.b.g #9 ENSGT00940000154307.D.i.b #10 ENSGT00940000160722.e #11 ENSGT00940000158956.c.h #12 ENSGT00940000158208.a.a.e #13 ENSGT01040000240451.a.b.a.b.b.b #14 ENSGT01050000244940.a.a.g.b.a #15 ENSGT00530000063607.a.m.a #16 ENSGT00940000159544.i #17 ENSGT00390000002944.d.b #19 ENSGT00950000183188.A.a.b.c #20 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.a.a.a.b ##21 ENSGT00940000154457.a.a.a.b.a.a.b #23 ENSGT00940000159411.b.`c.a #24 ENSGT00940000160178.e.a #25 ENSGT00530000063693.b.j #26 ENSGT00940000161086.f #27 ENSGT00940000157965.d.d #28 ENSGT00940000155407.i #29 ENSGT00390000002707.t #30 ENSGT00950000183113.a.b.e #32 ENSGT00940000160207.b.f #33 ENSGT00950000182835.c.c.g.b.g #34 ENSGT00940000162980.k #35 ENSGT00950000182994.B.a.a.a.f.b ##36 ENSGT00940000156650.i.e #37 ENSGT00390000017567.q ENSGT00390000005294.a.b Chinook salmon MODERN SPECIES 7 igfbp6b (ENSOTSG00005009915) #8 ENSOTSG00005009828 #9 gpr182 (ENSOTSG00005009827) #10 ENSOTSG00005009826 #11 agap2 (ENSOTSG00005005733) #12 ENSOTSG00005005721 #13 ctdsp2 (ENSOTSG00005005719) #14 TMBIM6 (ENSOTSG00005005718) #15 ENSOTSG00005005717 #16 ccnt1 (ENSOTSG00005005716) #17 ccnt1 (ENSOTSG00005005714) #18 ENSOTSG00005005705 #19 pmelb (ENSOTSG00005005702) #20 ENSOTSG00005005701 #21 TUBA4B (ENSOTSG00005005700) #22 ENSOTSG00005005699 #23 jph2 (ENSOTSG00005005698) #24 GDAP1L1 (ENSOTSG00005005696) #25 fitm2 (ENSOTSG00005005694) #26 R3HDML (ENSOTSG00005005692) #27 hnf4a (ENSOTSG00005005667) #28 ttpal (ENSOTSG00005028588) #29 pkig (ENSOTSG00005028587) #30 ENSOTSG00005028586 #31 ada (ENSOTSG00005027934) #32 ccn5 (ENSOTSG00005027933) #33 pfkfb1 (ENSOTSG00005024375) #34 ENSOTSG00005023923 #35 gdi1 (ENSOTSG00005023907) #36 atp6ap1b (ENSOTSG00005023905) #37 taf8 (ENSOTSG00005023900) Northern pike MODERN SPECIES 11 gpr182 (ENSELUG00000007136) #10 ZBTB39 (ENSELUG00000007121) #11 agap2 (ENSELUG00000007107) #12 tspan31 (ENSELUG00000007060) ENSELUG00000007038 #13 SLC11A2 (ENSELUG00000007018) TMBIM6 (ENSELUG00000006973) #15 ENSELUG00000006909 #16 kansl2 (ENSELUG00000000222) ccnt1 (ENSELUG00000006830) #17 ccnt1 (ENSELUG00000006814) #17 ENSELUG00000006786 #19 pmelb (ENSELUG00000006726) #20 ENSELUG00000006694 ##22 ENSELUG00000006681 ##21 ENSELUG00000013081 #23 jph2 (ENSELUG00000006661) #24 GDAP1L1 (ENSELUG00000006637) #25 fitm2 (ENSELUG00000006611) #26 R3HDML (ENSELUG00000006594) #27 hnf4a (ENSELUG00000006558) #28 ttpal (ENSELUG00000006513) #29 pkig (ENSELUG00000006496) #30 ada (ENSELUG00000006483) #32 ENSELUG00000032073 ccn5 (ENSELUG00000006428) #33 ENSELUG00000028739 pfkfb1 (ENSELUG00000006386) #34 ITIH6 (ENSELUG00000006309) #35 gdi1 (ENSELUG00000006250) ##36 atp6ap1b (ENSELUG00000006198) #37 Acanthomorphata ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.b.a.a #22 Euacanthomorphacea ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.b.a.a #22 Percomorphaceae ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.b.a.a #22 Tiger tail seahorse MODERN SPECIES 261 mfsd6a (ENSHCOG00000008521) ENSHCOG00000008499 ahr1b (ENSHCOG00000008459) ENSHCOG00000008248 sh3bp4a (ENSHCOG00000008245) arl4cb (ENSHCOG00000008233) AOX1 (ENSHCOG00000008197) bzw1a (ENSHCOG00000008122) ENSHCOG00000008098 ENSHCOG00000008091 ENSHCOG00000008045 KYNU (ENSHCOG00000008024) tmem269 (ENSHCOG00000007976) HSPG2 (ENSHCOG00000007952) agmat (ENSHCOG00000007845) ENSHCOG00000007840 #22 fam43b (ENSHCOG00000007837) ENSHCOG00000007832 mul1b (ENSHCOG00000007824) NUP210 (ENSHCOG00000007802) ENSHCOG00000007559 BICD2 (ENSHCOG00000007546) ENSHCOG00000007516 zgc:171857 (ENSHCOG00000007486) WNT7A (ENSHCOG00000007463) FBLN2 (ENSHCOG00000007449) Euteleosteomorpha ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.b.a.b ##22 Protacanthopterygii ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.b.a.b ##22 Salmoninae ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.b.a.b ##22 Salmoninae_a ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.b.a.b ##22 Oncorhynchus ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.b.a.b ##22 Oncorhynchus_a ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.b.a.b ##22 Coho salmon MODERN SPECIES 16 ZBTB39 (ENSOKIG00005012335) ##11 agap2 (ENSOKIG00005012353) ##12 tspan31 (ENSOKIG00005012433) MARCHF9 (ENSOKIG00005012450) ##13 SLC11A2 (ENSOKIG00005012522) ctdsp2 (ENSOKIG00005013608) ##14 TMBIM6 (ENSOKIG00005013643) ##15 ENSOKIG00005013673 ##16 kansl2 (ENSOKIG00005013700) ccnt1 (ENSOKIG00005013743) ##17 ccnt1 (ENSOKIG00005013752) ##17 ENSOKIG00005013769 ##19 ENSOKIG00005013804 ##20 ENSOKIG00005013819 ##22 ENSOKIG00005013854 ##21 ENSOKIG00005013875 ##22 jph2 (ENSOKIG00005013893) ##24 ENSOKIG00005013899 ##25 fitm2 (ENSOKIG00005013908) ##26 R3HDML (ENSOKIG00005013912) ##27 hnf4a (ENSOKIG00005013923) ##28 ttpal (ENSOKIG00005014006) ##29 pkig (ENSOKIG00005014024) ##30 ada (ENSOKIG00005014057) ##32 ccn5 (ENSOKIG00005014325) ##33 ENSOKIG00005014328 ENSOKIG00005014338 pfkfb1 (ENSOKIG00005014506) ##34 ENSOKIG00005018763 ##35 gdi1 (ENSOKIG00005018822) ##36 atp6ap1b (ENSOKIG00005019630) ##37 Euteleosteomorpha ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.b.b ##22 Protacanthopterygii ANCESTRAL SPECIES 557 ENSGT00950000183165.b.b.b ENSGT00940000154457.a.a.a.b.b ##22 Salmoninae ANCESTRAL SPECIES 1983 ENSGT00950000183165.b.b.b ENSGT00940000154457.a.a.a.b.b ##22 Salmoninae_a ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.b.b ##22 Oncorhynchus ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.b.b ##22 Oncorhynchus_a ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.b.b ##22 Coho salmon MODERN SPECIES 25 STX16 (ENSOKIG00005034527) slc11a2 (ENSOKIG00005034199) ENSOKIG00005034141 CTDSP2 (ENSOKIG00005034104) ##14 avil (ENSOKIG00005031571) TMBIM6 (ENSOKIG00005031205) ##15 ENSOKIG00005031176 ENSOKIG00005031161 ##16 ENSOKIG00005031152 gdf11 (ENSOKIG00005031138) ENSOKIG00005031131 SARNP (ENSOKIG00005031020) ##19 cdk2 (ENSOKIG00005030929) pmela (ENSOKIG00005030914) ##20 ENSOKIG00005030909 ##21 ENSOKIG00005030897 ##22 ENSOKIG00005030876 ##22 PRPH (ENSOKIG00005030805) ENSOKIG00005030774 MMP19 (ENSOKIG00005030747) suox (ENSOKIG00005030755) cyp27b1 (ENSOKIG00005030670) mettl1 (ENSOKIG00005030597) MARCHF9 (ENSOKIG00005030579) ##13 CDK4 (ENSOKIG00005030553) TSPAN31 (ENSOKIG00005030501) AGAP2 (ENSOKIG00005030140) ##12 ENSOKIG00005030020 ENSOKIG00005030006 ENSOKIG00005029979 ##8 SPRYD3 (ENSOKIG00005029871) Huchen MODERN SPECIES 243 ENSHHUG00000047271 #9 gpr182 (ENSHHUG00000047269) #10 ENSHHUG00000047267 #11 agap2 (ENSHHUG00000047216) #12 ENSHHUG00000047213 MARCHF9 (ENSHHUG00000047211) #13 ctdsp2 (ENSHHUG00000047201) #14 TMBIM6 (ENSHHUG00000047190) #15 ENSHHUG00000047179 #16 kansl2 (ENSHHUG00000047158) ccnt1 (ENSHHUG00000047155) #17 sarnp (ENSHHUG00000047137) #19 pmelb (ENSHHUG00000047120) #20 ENSHHUG00000047008 ##22 ENSHHUG00000047004 TUBA4B (ENSHHUG00000047002) ##22 ENSHHUG00000046990 ##21 jph2 (ENSHHUG00000046988) #24 ENSHHUG00000046987 GDAP1L1 (ENSHHUG00000046977) #25 fitm2 (ENSHHUG00000046972) #26 R3HDML (ENSHHUG00000046968) #27 hnf4a (ENSHHUG00000046902) #28 ttpal (ENSHHUG00000046900) #29 pkig (ENSHHUG00000046897) #30 ada (ENSHHUG00000046856) #32 ccn5 (ENSHHUG00000046846) #33 ENSHHUG00000046841 pfkfb1 (ENSHHUG00000045619) #34 ENSHHUG00000045459 #35 gdi1 (ENSHHUG00000045410) #36 Acanthomorphata ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.b.b ##22 Euacanthomorphacea ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.b.b ##22 Percomorphaceae ANCESTRAL SPECIES 387 ENSGT00950000183165.b.b.b ENSGT00940000154457.a.a.a.b.b ##22 Percomorphaceae_B ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.b.b ##22 Percomorphaceae_C ANCESTRAL SPECIES 4 ENSGT00950000182835.c.c.g.b #34 ENSGT00940000166720 ENSGT00940000155094.b ENSGT00940000160207.b #33 ENSGT00950000183113.a.b #32 ENSGT00390000002707 #30 ENSGT00940000155407 #29 ENSGT00940000157965.d #28 ENSGT00940000161086 #27 ENSGT00530000063693.b #26 ENSGT00940000160178 #25 ENSGT00940000159411.b #24 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.b ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.h.e.a ##21 ENSGT00950000183165.b.b.b.b ENSGT00940000154457.a.a.a.b.b ##22 ENSGT00940000154457.a.a.b ##22 ENSGT00950000183188.A.a.b #20 ENSGT00390000002944 #19 ENSGT00940000159544 #17 ENSGT00940000155808 ENSGT00530000063607.a #16 ENSGT01050000244940.a.a #15 ENSGT01040000240451.a.b.a #14 ENSGT00940000155330.b ENSGT00940000158208.a.a #13 ENSGT00940000160351 ENSGT00940000158956.c #12 ENSGT00940000160722 #11 ENSGT00940000154307.D #10 ENSGT00940000156890.a.b #9 Percomorphaceae_D ANCESTRAL SPECIES 80 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.a.b ##21 ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00940000154457.a.a.a.b.b ##22 Carangaria ANCESTRAL SPECIES 73 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.a.b ##21 ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00940000154457.a.a.a.b.b ##22 Pleuronectoidei ANCESTRAL SPECIES 157 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.a.b ##21 ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00940000154457.a.a.a.b.b ##22 Tongue sole MODERN SPECIES 1 ENSCSEG00000009885 #35 pfkfb1 (ENSCSEG00000009829) #34 ENSCSEG00000009816 ENSCSEG00000009804 ugt5e1 (ENSCSEG00000009801) ccn5 (ENSCSEG00000009789) #33 ada (ENSCSEG00000009764) #32 pkig (ENSCSEG00000009758) #30 ttpal (ENSCSEG00000009750) #29 hnf4a (ENSCSEG00000009708) #28 fitm2 (ENSCSEG00000009699) #26 GDAP1L1 (ENSCSEG00000009689) #25 ENSCSEG00000009677 tuba1b (ENSCSEG00000009667) ##21 ENSCSEG00000009661 ##21 TUBA4B (ENSCSEG00000009654) ##22 pmelb (ENSCSEG00000009638) #20 ccnt1 (ENSCSEG00000009610) #17 kansl2 (ENSCSEG00000009572) ENSCSEG00000009548 #16 TMBIM6 (ENSCSEG00000009530) #15 ctdsp2 (ENSCSEG00000009526) #14 SLC11A2 (ENSCSEG00000009471) MARCHF9 (ENSCSEG00000009463) #13 tspan31 (ENSCSEG00000009454) agap2 (ENSCSEG00000009387) #12 gpr182 (ENSCSEG00000009374) #10 ENSCSEG00000009369 #11 ENSCSEG00000009357 #9 igfbp6b (ENSCSEG00000009344) #8 spryd3 (ENSCSEG00000009310) Eupercaria ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.b.b ##22 Eupecaria_A ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.b.b ##22 Eupecaria_B ANCESTRAL SPECIES 77 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.h.e.a ##21 ENSGT00950000183165.b.b.b.b ENSGT00940000154457.a.a.a.b.b ##22 Eupecaria_C ANCESTRAL SPECIES 5 ENSGT00950000183113.a.b #32 ENSGT00390000002707 #30 ENSGT00940000155407 #29 ENSGT00940000157965.d #28 ENSGT00940000161086 #27 ENSGT00530000063693.b #26 ENSGT00940000160178 #25 ENSGT00940000159411.b #24 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.a.b ##21 ENSGT00390000002944 #19 ENSGT00950000183188.A.a.b #20 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.b ##21 ENSGT00940000154457.a.a.b ##22 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.h.e.a ##21 ENSGT00950000183165.b.b.b.b ENSGT00940000154457.a.a.a.b.b ##22 Gilthead seabream MODERN SPECIES 21 ormdl2 (ENSSAUG00010011802) nemp1 (ENSSAUG00010011798) cd63 (ENSSAUG00010011797) letmd1 (ENSSAUG00010011791) zgc:56699 (ENSSAUG00010011789) nr4a1 (ENSSAUG00010011787) tamalin (ENSSAUG00010011779) dgkaa (ENSSAUG00010009293) rnf41 (ENSSAUG00010009251) ankrd52a (ENSSAUG00010008730) ENSSAUG00010008712 tuba1a (ENSSAUG00010008710) ##21 pmelb (ENSSAUG00010008705) #20 sarnp (ENSSAUG00010008698) #19 ENSSAUG00010008697 ENSSAUG00010008695 ##22 ENSSAUG00010008690 ##22 TUBA4B (ENSSAUG00010008679) ##22 jph2 (ENSSAUG00010008678) #24 GDAP1L1 (ENSSAUG00010008676) #25 fitm2 (ENSSAUG00010008674) #26 R3HDML (ENSSAUG00010008670) #27 hnf4a (ENSSAUG00010008665) #28 ttpal (ENSSAUG00010008662) #29 pkig (ENSSAUG00010008661) #30 ada (ENSSAUG00010008446) #32 ccn5 (ENSSAUG00010008438) #33 ENSSAUG00010008437 ENSSAUG00010008435 ENSSAUG00010008434 ENSSAUG00010008432 Perciformes ANCESTRAL SPECIES 165 ENSGT00950000183165.b.b.b.b ENSGT00940000154457.a.a.a.b.b ##22 Perciformes_a ANCESTRAL SPECIES 299 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.b ##21 ENSGT00940000154457.a.a.a.b.b ##22 Pike perch MODERN SPECIES 103 gpr182 (ENSSLUG00000024703) #10 ZBTB39 (ENSSLUG00000024706) #11 agap2 (ENSSLUG00000024722) #12 tspan31 (ENSSLUG00000024752) MARCHF9 (ENSSLUG00000024754) #13 SLC11A2 (ENSSLUG00000001755) ctdsp2 (ENSSLUG00000002138) #14 TMBIM6 (ENSSLUG00000002156) #15 ENSSLUG00000002179 #16 kansl2 (ENSSLUG00000002197) ccnt1 (ENSSLUG00000002225) #17 sarnp (ENSSLUG00000002239) #19 pmelb (ENSSLUG00000002252) #20 tuba1c (ENSSLUG00000002293) ##21 ENSSLUG00000002305 ##22 ENSSLUG00000002329 ##22 ENSSLUG00000002336 ##22 TUBA4B (ENSSLUG00000002342) ##22 ENSSLUG00000002351 ##22 jph2 (ENSSLUG00000002353) #24 GDAP1L1 (ENSSLUG00000002357) #25 fitm2 (ENSSLUG00000002359) #26 R3HDML (ENSSLUG00000002362) #27 hnf4a (ENSSLUG00000002372) #28 ttpal (ENSSLUG00000002394) #29 pkig (ENSSLUG00000002403) #30 ada (ENSSLUG00000002481) #32 ccn5 (ENSSLUG00000002859) #33 ENSSLUG00000002861 ENSSLUG00000002866 Cottioidei ANCESTRAL SPECIES 159 ENSGT00950000183165.b.b.b.b ENSGT00940000154457.a.a.a.b.b ##22 Lumpfish MODERN SPECIES 22 CABLES2 (ENSCLMG00005014649) ENSCLMG00005014648 CCM2L (ENSCLMG00005014645) xkr7b (ENSCLMG00005014644) SOX18 (ENSCLMG00005014635) tcea2 (ENSCLMG00005014564) rgs19 (ENSCLMG00005014561) FAM187A (ENSCLMG00005014560) oprl1 (ENSCLMG00005014558) NPBWR2 (ENSCLMG00005014557) ENSCLMG00005014556 RAB29 (ENSCLMG00005014555) cry3a (ENSCLMG00005014554) rps21 (ENSCLMG00005014552) ENSCLMG00005014551 ENSCLMG00005014549 ##22 lama5 (ENSCLMG00005014543) adrm1 (ENSCLMG00005014536) ADRM1 (ENSCLMG00005014534) ADRM1 (ENSCLMG00005014504) DNAJC5 (ENSCLMG00005014500) trim101 (ENSCLMG00005014498) tpd52l2b (ENSCLMG00005014496) ppdpfb (ENSCLMG00005014495) ptk6b (ENSCLMG00005014494) ENSCLMG00005014492 nol4lb (ENSCLMG00005014491) commd7 (ENSCLMG00005014490) dnmt3bb.1 (ENSCLMG00005012506) dnmt3bb.2 (ENSCLMG00005012232) mapre1b (ENSCLMG00005012230) Ovalentaria ANCESTRAL SPECIES 6 ENSGT00940000160207.b #33 ENSGT00950000183113.a.b #32 ENSGT00390000002707 #30 ENSGT00940000155407 #29 ENSGT00940000157965.d #28 ENSGT00940000161086 #27 ENSGT00530000063693.b #26 ENSGT00940000160178 #25 ENSGT00940000159411.b #24 ENSGT00950000183165.b.b.b.b ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.b ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.td.a.a ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.sd.a ##21 ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00940000154457.a.a.a.b.b ##22 ENSGT00950000183188.A.a.b #20 ENSGT00390000002944 #19 ENSGT00940000159544 #17 ENSGT00940000155808 ENSGT00530000063607.a #16 ENSGT01050000244940.a.a #15 ENSGT01040000240451.a.b.a #14 ENSGT00940000155330.b ENSGT00940000158208.a.a #13 ENSGT00940000160351 ENSGT00940000158956.c #12 ENSGT00940000160722 #11 ENSGT00940000154307.D #10 ENSGT00940000156890.a.b #9 ENSGT00940000160528.b #8 Ovalentaria_B ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.b.b ##22 Cichlidae ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.b.b ##22 Pseudocrenilabrinae ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.b.b ##22 Pseudocrenilabrinae_A ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.b.b ##22 Haplochromini ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.b.b ##22 Haplochromini_A ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.b.b ##22 P. nyererei MODERN SPECIES 754 pak1 (ENSPNYG00000017957) ENSPNYG00000017940 ##22 ENSPNYG00000017913 myo7aa (ENSPNYG00000017768) flot2b (ENSPNYG00000017721) FAM222B (ENSPNYG00000017716) Atherinomorphae ANCESTRAL SPECIES 3 ENSGT00950000182835.c.c.g.b #34 ENSGT00940000155094.b.x.b ENSGT00940000166720 ENSGT00940000155094.b.w ENSGT00940000160207.b #33 ENSGT00950000183113.a.b #32 ENSGT00390000002707 #30 ENSGT00940000155407 #29 ENSGT00940000157965.d #28 ENSGT00940000161086 #27 ENSGT00530000063693.b #26 ENSGT00940000160178 #25 ENSGT00940000159411.b #24 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.b ##21 ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00940000154457.a.a.a.b.b ##22 ENSGT00950000183188.A.a.b #20 ENSGT00390000002944 #19 ENSGT00940000159544 #17 ENSGT00940000155808 ENSGT00530000063607.a #16 ENSGT01050000244940.a.a #15 ENSGT01040000240451.a.b.a #14 ENSGT00940000155330.b ENSGT00940000158208.a.a #13 ENSGT00940000160351 ENSGT00940000158956.c #12 ENSGT00940000160722 #11 ENSGT00940000154307.D #10 ENSGT00940000156890.a.b #9 ENSGT00940000160528.b #8 Cyprinodontiformes ANCESTRAL SPECIES 130 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.sd.a ##21 ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00940000154457.a.a.a.b.b ##22 Aplocheiloidei ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.b.b ##22 Turquoise killifish MODERN SPECIES 1624 lhfpl5b (ENSNFUG00015023161) CPNE5 (ENSNFUG00015023021) dclre1b (ENSNFUG00015023000) ENSNFUG00015022999 adora1b (ENSNFUG00015022998) mmp9 (ENSNFUG00015022858) ZNF335 (ENSNFUG00015022709) ENSNFUG00015022697 PROK1 (ENSNFUG00015022690) lamtor5 (ENSNFUG00015022689) SLC16A4 (ENSNFUG00015022684) RBM15 (ENSNFUG00015022683) ALX3 (ENSNFUG00015022679) ENSNFUG00015022676 slc6a17 (ENSNFUG00015022669) ENSNFUG00015022660 ##22 KCNC4 (ENSNFUG00015022655) ENSNFUG00015022652 ENSNFUG00015022650 ENSNFUG00015022648 ahcyl1 (ENSNFUG00015022460) nfyal (ENSNFUG00015022433) ngrn (ENSNFUG00015022428) SORT1B (ENSNFUG00015022402) SYPL2B (ENSNFUG00015022396) AMIGO1 (ENSNFUG00015022395) GPR61 (ENSNFUG00015022394) gnai3 (ENSNFUG00015022390) gnat2 (ENSNFUG00015022385) GSTM3 (ENSNFUG00015022304) GSTM3 (ENSNFUG00015022289) Cyprinodontoidei ANCESTRAL SPECIES 174 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.sd.a ##21 ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00940000154457.a.a.a.b.b ##22 NAME_4 ANCESTRAL SPECIES 544 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.td.a.a ##21 ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00940000154457.a.a.a.b.b ##22 Mummichog MODERN SPECIES 797 arfip2b (ENSFHEG00000011111) fhdc3 (ENSFHEG00000011175) trim3b (ENSFHEG00000011383) ENSFHEG00000011424 ##21 ENSFHEG00000011433 ##22 trim47 (ENSFHEG00000011466) ENSFHEG00000011486 Oryzias ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.b.b ##22 Oryzias_b ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.b.b ##22 Javanese ricefish MODERN SPECIES 21 ENSOJAG00000000748 acss2 (ENSOJAG00000000533) tafazzin (ENSOJAG00000000467) atp6ap1a (ENSOJAG00000000456) ##37 ENSOJAG00000000442 ENSOJAG00000000437 ada (ENSOJAG00000000407) #32 ENSOJAG00000000385 ttpal (ENSOJAG00000000370) #29 hnf4a (ENSOJAG00000000335) #28 R3HDML (ENSOJAG00000000270) #27 fitm2 (ENSOJAG00000000255) #26 GDAP1L1 (ENSOJAG00000000247) #25 jph2 (ENSOJAG00000000238) #24 ENSOJAG00000000216 ##21 ENSOJAG00000000139 ##22 pmelb (ENSOJAG00000000094) #20 sarnp (ENSOJAG00000000076) #19 ccnt1 (ENSOJAG00000017071) #17 kansl2 (ENSOJAG00000017036) ENSOJAG00000016993 #16 TMBIM6 (ENSOJAG00000016960) #15 ctdsp2 (ENSOJAG00000016915) #14 SLC11A2 (ENSOJAG00000015270) MARCHF9 (ENSOJAG00000015235) #13 tspan31 (ENSOJAG00000015209) agap2 (ENSOJAG00000014437) #12 gpr182 (ENSOJAG00000014395) #10 ZBTB39 (ENSOJAG00000014387) #11 ENSOJAG00000013820 #9 igfbp6b (ENSOJAG00000013754) #8 Oryzias_a ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.b.b ##22 Japanese Medaka HdrR MODERN SPECIES 22 ENSORLG00000022907 ELOF1 (ENSORLG00000016547) CNN1 (ENSORLG00000016543) tlcd4b (ENSORLG00000024397) plppr2a (ENSORLG00000016517) ENSORLG00000025698 nfil3-6 (ENSORLG00000016487) ENSORLG00000022104 ENSORLG00000016476 ENSORLG00000027093 ENSORLG00000016438 gcdhb (ENSORLG00000016423) ENSORLG00000016414 farsa (ENSORLG00000016406) ilf3b (ENSORLG00000016379) ENSORLG00000022416 ##22 ptger1b (ENSORLG00000016366) ENSORLG00000023912 pglyrp6 (ENSORLG00000016356) trappc5 (ENSORLG00000025442) ENSORLG00000016346 ENSORLG00000030221 ENSORLG00000022678 pkn1b (ENSORLG00000016312) ENSORLG00000016288 ENSORLG00000026263 ENSORLG00000016274 trir (ENSORLG00000016259) ubn2b (ENSORLG00000016256) rpsa (ENSORLG00000016251) slc25a38a (ENSORLG00000016238) Clupeocephala ANCESTRAL SPECIES 39 ENSGT00950000183038.a.b.a.g ENSGT01020000230633 ENSGT00390000006330.a.b ENSGT00940000155637 ENSGT00940000156785 ENSGT00940000161997.b ENSGT01010000222336.b.a.a ENSGT00390000005536 ENSGT00390000003749 ENSGT00940000158593.a ENSGT00390000016940.c.a.b ENSGT00390000015124 ENSGT00940000160203 ENSGT00940000154457.a.b ##22 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.a ##21 ENSGT00940000154457.a.a.a.a ##22 ENSGT00950000183188.A.a.a ##20 ENSGT00940000159517 ENSGT00940000178340 ENSGT01050000245365 ENSGT00940000159587 ENSGT01040000240451.a.b.a #14 ENSGT00940000155330.c ENSGT00940000161297 ENSGT00950000182905.a.a.b ENSGT00390000017840 ENSGT00940000158208.a.b ##13 ENSGT00940000154770 ENSGT00940000158956.d ##12 ENSGT00940000156890.a.a ##9 ENSGT00940000160528.a ##8 Euteleosteomorpha ANCESTRAL SPECIES 691 ENSGT00940000154457.a.b ##22 ENSGT00940000154457.a.a.a.a ##22 Protacanthopterygii ANCESTRAL SPECIES 524 ENSGT00950000183165.b.b.a.a ENSGT00940000154457.a.a.a.a ##22 Salmoninae DUPLICATION Salmoninae DUPLICATION Salmoninae ANCESTRAL SPECIES 335 ENSGT00940000158675.b.a ENSGT00940000160528.a.c ##8 ENSGT00940000158956.d.b ##12 ENSGT00940000160351.f ENSGT00940000154770.vb ENSGT00940000158208.a.b.b ##13 ENSGT00390000017840.g ENSGT00950000182905.a.a.b.c ENSGT00390000005536.n ENSGT00390000003749 ENSGT00940000158593.a.d ENSGT00390000016940.c.a.b.d ENSGT00940000160203.a ENSGT00940000154457.a.b.i ##22 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00940000154457.a.a.a.a.a.a ##22 ENSGT00950000183188.A.a.a.e ##20 ENSGT00940000159517.d ENSGT00940000178340 Huchen MODERN SPECIES 3490 prph (ENSHHUG00000015328) ENSHHUG00000015354 ##22 ENSHHUG00000015884 ##21 ENSHHUG00000015887 ##22 pmela (ENSHHUG00000015891) ##20 cdk2 (ENSHHUG00000015903) ENSHHUG00000016551 Salmoninae_a ANCESTRAL SPECIES 14 ENSGT00950000182994.B.a.a.a.e ##36 ENSGT00940000162980.l ##35 ENSGT00950000182835.c.c.g.b.h ##34 ENSGT00940000166720.d ENSGT00940000155094.b.b ENSGT00940000160207.b.e ##33 ENSGT00950000183113.a.b.f ##32 ENSGT00390000002707.s ##30 ENSGT00940000155407.j ##29 ENSGT00940000157965.d.c ##28 ENSGT00940000161086.e ##27 ENSGT00530000063693.b.i ##26 ENSGT00940000160178.e.b ##25 ENSGT00940000159411.b.`c.b ##24 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00940000154457.a.a.a.a.a.a ##22 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.a.a.a.b ##21 ENSGT00950000183188.A.a.b.d ##20 ENSGT00390000002944.d.a ##19 ENSGT00940000159544.j ##17 ENSGT00940000155808 ENSGT00530000063607.a.m.b ##16 ENSGT01050000244940.a.a.g.b.b ##15 ENSGT01040000240451.a.b.a.b.b.a ##14 ENSGT00940000155330.b ENSGT00940000158208.a.a.f ##13 ENSGT00940000160351.e ENSGT00940000158956.c.g ##12 ENSGT00940000160722.f ##11 ENSGT00940000154307.D.i.a ##10 ENSGT00940000156890.a.b.h ##9 Salmo ANCESTRAL SPECIES 42 ENSGT00990000211052 ENSGT00940000158956.d.b ##12 ENSGT00940000160351.f ENSGT00940000154770.vb ENSGT00940000158208.a.b.b ##13 ENSGT00390000017840.g ENSGT00950000182905.a.a.b.c ENSGT00390000005536.n ENSGT00390000003749 ENSGT00940000158593.a.d ENSGT00390000016940.c.a.b.d ENSGT00940000160203.a ENSGT00940000154457.a.b.i ##22 ENSGT00940000154457.a.a.a.a.b ##22 ENSGT00950000183165.b.b.a.a.b ENSGT00940000154457.a.a.a.a.a.a ##22 ENSGT00950000183188.A.a.a.e ##20 ENSGT00940000159517.d ENSGT00390000002944.c.a ##19 ENSGT00940000166043.c ENSGT00940000154971.v ENSGT00530000063607.a.n.a ##16 ENSGT00390000002215.j.a ENSGT01050000244940.a.a.g.a.b ##15 ENSGT00940000159587.k ENSGT01040000240451.a.b.a.b.a.b ##14 ENSGT00940000154276.g.b ENSGT00940000155330.c.e ENSGT00940000161297 ENSGT01000000214440.B.c ENSGT00530000063255.A.l Atlantic salmon MODERN SPECIES 14 ENSSSAG00000066545 ENSSSAG00000083495 ENSSSAG00000113917 ##8 AGAP2 (ENSSSAG00000081214) ##12 TSPAN31 (ENSSSAG00000114003) CDK4 (ENSSSAG00000081232) MARCHF9 (ENSSSAG00000106845) ##13 mettl1 (ENSSSAG00000081237) ENSSSAG00000109811 ENSSSAG00000065105 ENSSSAG00000081252 ENSSSAG00000081255 ENSSSAG00000081259 ENSSSAG00000081262 prph (ENSSSAG00000081265) ENSSSAG00000120054 ##22 ENSSSAG00000081267 ##22 ENSSSAG00000081268 ##21 ENSSSAG00000081271 ##20 cdk2 (ENSSSAG00000081273) ENSSSAG00000081276 ##19 ENSSSAG00000081288 ENSSSAG00000081289 ENSSSAG00000121952 ENSSSAG00000081291 ##16 ENSSSAG00000122117 ##15 ENSSSAG00000084911 ENSSSAG00000081424 ##14 ENSSSAG00000093889 ENSSSAG00000081436 stx16 (ENSSSAG00000051743) Oncorhynchus ANCESTRAL SPECIES 5 ENSGT00940000158675.b.a ENSGT00940000160528.a.c ##8 ENSGT00990000211052 ENSGT00940000158956.d.b ##12 ENSGT00940000160351.f ENSGT00940000154770.vb ENSGT00940000158208.a.b.b ##13 ENSGT00390000017840.g ENSGT00950000182905.a.a.b.c ENSGT00390000005536.n ENSGT00390000003749.h ENSGT00940000158593.a.d ENSGT00390000016940.c.a.b.d ENSGT00940000160203.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00940000154457.a.a.a.a.a.a ##22 ENSGT00950000183188.A.a.a.e ##20 ENSGT00940000159517.d ENSGT00390000002944.c.a ##19 ENSGT00940000166043.c ENSGT00940000154971.v ENSGT00530000063607.a.n.a ##16 ENSGT00390000002215.j.a ENSGT01050000244940.a.a.g.a.b ##15 ENSGT00940000159587.k ENSGT01040000240451.a.b.a.b.a.b ##14 ENSGT00940000154276.g.b ENSGT00940000155330.c.e ENSGT00940000161297 ENSGT01000000214440.B.c ENSGT00530000063255.A.l Oncorhynchus_a ANCESTRAL SPECIES 4 ENSGT00940000160528.a.c ##8 ENSGT00990000211052 ENSGT00940000158956.d.b ##12 ENSGT00940000160351.f ENSGT00940000154770.vb ENSGT00940000158208.a.b.b ##13 ENSGT00390000017840.g ENSGT00950000182905.a.a.b.c ENSGT00390000005536.n ENSGT00390000003749.h ENSGT00940000158593.a.d ENSGT00390000016940.c.a.b.c.a ENSGT00390000016940.c.a.b.d ENSGT00940000160203.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00940000154457.a.a.a.a.a.a ##22 ENSGT00950000183188.A.a.a.e ##20 ENSGT00940000159517.d ENSGT00940000178340 ENSGT00940000166043.c ENSGT00940000154971.v ENSGT00530000063607.a.n.a ##16 ENSGT00390000002215.j.a ENSGT01050000244940.a.a.g.a.b ##15 ENSGT00940000159587.k ENSGT01040000240451.a.b.a.b.a.b ##14 ENSGT00940000154276.g.b ENSGT00940000155330.c.e ENSGT01000000214440.B.c ENSGT00530000063255.A.l ENSGT00940000155569.a.a.g Chinook salmon MODERN SPECIES 31 ENSOTSG00005029846 AGAP2 (ENSOTSG00005029850) ##12 TSPAN31 (ENSOTSG00005029899) cdk4 (ENSOTSG00005029900) ENSOTSG00005029901 ##13 mettl1 (ENSOTSG00005029902) cyp27b1 (ENSOTSG00005029907) mcrs1 (ENSOTSG00005030187) suox (ENSOTSG00005030192) viml (ENSOTSG00005030194) MMP19 (ENSOTSG00005030195) ENSOTSG00005030198 ENSOTSG00005030199 prph (ENSOTSG00005030201) ENSOTSG00005030203 ##21 ENSOTSG00005030204 ##22 pmela (ENSOTSG00005030206) ##20 cdk2 (ENSOTSG00005030209) ENSOTSG00005030214 RAB31 (ENSOTSG00005030216) ENSOTSG00005030217 ENSOTSG00005030218 ENSOTSG00005030223 ENSOTSG00005030224 ENSOTSG00005030235 ENSOTSG00005030236 nsrp1 (ENSOTSG00005030260) ENSOTSG00005030262 ENSOTSG00005030263 coro6 (ENSOTSG00005030265) dnajc3b (ENSOTSG00005030268) Salmoninae ANCESTRAL SPECIES 3 ENSGT00940000158675.b.b ENSGT00940000160528.a.d ##8 ENSGT00940000156890.a.a ##9 ENSGT00940000154307.D.j ##10 ENSGT00940000158956.d.a ##12 ENSGT00940000154770.wb ENSGT00940000158208.a.b.a ##13 ENSGT00390000017840.h ENSGT00950000182905.a.a.b.d ENSGT00390000005536.m ENSGT00940000158593.a.c ENSGT00390000016940.c.a.b.c ENSGT00390000015124 ENSGT00940000160203.b ENSGT00940000154457.a.b.j ##22 ENSGT00940000154457.a.a.a.a.a.b ##22 ENSGT00950000183188.A.a.a.f ##20 ENSGT00940000159517.c ENSGT00390000002944.c ##19 ENSGT00940000166043.d ENSGT00530000063607.a.n.b ##16 ENSGT00390000002215.j.b ENSGT01050000244940.a.a.g.a.a ##15 ENSGT00940000159587.l ENSGT01040000240451.a.b.a.b.a.a ##14 ENSGT00940000154276.g.a ENSGT00940000155330.c.f ENSGT01000000214440.B.d ENSGT00530000063255.A.k ENSGT00940000155569.a.a.h ENSGT00390000001799 Salmoninae_a ANCESTRAL SPECIES 21 ENSGT00940000158675.b.b ENSGT00940000160528.a.d ##8 ENSGT00940000156890.a.a ##9 ENSGT00940000154307.D.j ##10 ENSGT00940000158956.d.a ##12 ENSGT00940000154770.wb ENSGT00940000158208.a.b.a ##13 ENSGT00390000017840.h ENSGT00950000182905.a.a.b.d ENSGT00390000005536.m ENSGT00940000158593.a.c ENSGT00390000016940.c.a.b.c.a ENSGT00390000015124 ENSGT00940000160203.b ENSGT00940000154457.a.b.j ##22 ENSGT00940000154457.a.a.a.a.a.b ##22 ENSGT00950000183188.A.a.a.f ##20 ENSGT00940000159517.c ENSGT00390000002944.c.b ##19 ENSGT00940000166043.d ENSGT00530000063607.a.n.b ##16 ENSGT00390000002215.j.b ENSGT01050000244940.a.a.g.a.a ##15 ENSGT00940000159587.l ENSGT01040000240451.a.b.a.b.a.a ##14 ENSGT00940000154276.g.a ENSGT00940000155330.c.f ENSGT01000000221659 ENSGT01000000214440.B.d ENSGT00530000063255.A.k ENSGT00940000155569.a.a.h Salmo ANCESTRAL SPECIES 6 ENSGT00940000160528.a.d ##8 ENSGT00940000156890.a.a ##9 ENSGT00940000154307.D.j ##10 ENSGT00940000158956.d.a ##12 ENSGT00940000154770.wb ENSGT00940000158208.a.b.a ##13 ENSGT00390000017840.h ENSGT00950000182905.a.a.b.d ENSGT00390000005536.m ENSGT00940000158593.a.c ENSGT00390000016940.c.a.b.c.a ENSGT00390000015124 ENSGT00940000160203.b ENSGT00940000154457.a.b.j ##22 ENSGT00950000183165.b.b.a.a.a ENSGT00940000154457.a.a.a.a.a.b ##22 ENSGT00950000183188.A.a.a.f ##20 ENSGT00940000159517.c ENSGT00390000002944.c.b ##19 ENSGT00940000166043.d ENSGT00530000063607.a.n.b ##16 ENSGT00390000002215.j.b ENSGT01050000244940.a.a.g.a.a ##15 ENSGT00940000159587.l ENSGT01040000240451.a.b.a.a ##14 ENSGT00940000154276.g.a ENSGT00940000155330.c.f ENSGT01000000221659 ENSGT01000000214440.B.d ENSGT00530000063255.A.k ENSGT00940000155569.a.a.h River trout MODERN SPECIES 5 SPRYD3 (ENSSTUG00000029972) ENSSTUG00000030009 ##8 ENSSTUG00000030016 PIP4K2C (ENSSTUG00000030040) ##9 AGAP2 (ENSSTUG00000030435) ##12 cdk4 (ENSSTUG00000030494) MARCHF9 (ENSSTUG00000030513) ##13 mettl1 (ENSSTUG00000030520) cyp27b1 (ENSSTUG00000030531) mcrs1 (ENSSTUG00000030592) MMP19 (ENSSTUG00000030640) ENSSTUG00000030724 timeless (ENSSTUG00000030744) prph (ENSSTUG00000030868) ENSSTUG00000030882 ENSSTUG00000030910 ##22 ENSSTUG00000030926 ##20 cdk2 (ENSSTUG00000030963) sarnp (ENSSTUG00000030983) ##19 gdf11 (ENSSTUG00000031005) ENSSTUG00000031013 ##16 ENSSTUG00000031037 ENSSTUG00000031040 TMBIM6 (ENSSTUG00000031044) ##15 avil (ENSSTUG00000031107) CTDSP2 (ENSSTUG00000035433) ##14 ENSSTUG00000035504 slc11a2 (ENSSTUG00000035551) STX16 (ENSSTUG00000038143) npepl1 (ENSSTUG00000038253) ctsz (ENSSTUG00000038327) Atlantic salmon MODERN SPECIES 3 ENSSSAG00000095933 ##8 ENSSSAG00000066258 ##9 ENSSSAG00000066219 ##10 AGAP2 (ENSSSAG00000066082) ##12 ENSSSAG00000114855 CDK4 (ENSSSAG00000066064) MARCHF9 (ENSSSAG00000120192) ##13 ENSSSAG00000066042 ENSSSAG00000081242 ENSSSAG00000065034 ENSSSAG00000064977 timeless (ENSSSAG00000063060) ENSSSAG00000064959 ENSSSAG00000095268 ##22 ENSSSAG00000099199 ENSSSAG00000104771 ##22 ENSSSAG00000062931 ##20 ENSSSAG00000110386 ENSSSAG00000062906 ##19 ENSSSAG00000062891 ENSSSAG00000119317 ##16 ENSSSAG00000085110 ENSSSAG00000062862 ##15 ENSSSAG00000093567 ENSSSAG00000095673 ENSSSAG00000093593 ##14 ENSSSAG00000055460 ENSSSAG00000055407 ENSSSAG00000114701 npepl1 (ENSSSAG00000055345) ctsz (ENSSSAG00000106221) Oncorhynchus ANCESTRAL SPECIES 1 ENSGT00940000158675.b.b ENSGT00940000160528.a.d ##8 ENSGT00940000156890.a.a ##9 ENSGT00940000154307.D.j ##10 ENSGT00940000158956.d.a ##12 ENSGT00940000154770.wb ENSGT00940000158208.a.b.a ##13 ENSGT00390000017840.h ENSGT00950000182905.a.a.b.d ENSGT00390000005536.m ENSGT00940000158593.a.c ENSGT00390000016940.c.a.b.c.b ENSGT00390000015124 ENSGT00940000160203.b ENSGT00940000154457.a.b.j ##22 ENSGT00940000154457.a.a.a.a.a.b ##22 ENSGT00950000183188.A.a.a.f ##20 ENSGT00940000159517.c ENSGT00390000002944.c.b ##19 ENSGT00940000166043.d ENSGT00530000063607.a.n.b ##16 ENSGT00390000002215.j.b ENSGT01050000244940.a.a.g.a.a ##15 ENSGT00940000159587.l ENSGT01040000240451.a.b.a.b.a.a ##14 ENSGT00940000154276.g.a ENSGT00940000155330.c.f ENSGT01000000221659 ENSGT01000000214440.B.d ENSGT00530000063255.A.k ENSGT00940000155569.a.a.h Rainbow trout MODERN SPECIES 8 ENSOMYG00000034548 ##7 ENSOMYG00000034484 IGFBP-6A2 (ENSOMYG00000034410) ##8 ENSOMYG00000062479 ENSOMYG00000034294 ##9 AGAP2 (ENSOMYG00000034215) ##12 CDK4 (ENSOMYG00000034166) MARCHF9 (ENSOMYG00000034152) ##13 ENSOMYG00000034078 ENSOMYG00000034027 ENSOMYG00000033987 ENSOMYG00000064376 ENSOMYG00000022941 ENSOMYG00000022779 ENSOMYG00000022743 ##22 ENSOMYG00000022658 ##22 ENSOMYG00000022608 ##20 ENSOMYG00000022586 ENSOMYG00000022493 ##19 ENSOMYG00000022454 ENSOMYG00000022383 ##16 ENSOMYG00000022335 ENSOMYG00000022320 ##15 ENSOMYG00000050293 ENSOMYG00000021276 ENSOMYG00000021004 ##14 hig1a (ENSOMYG00000020981) nramp-alpha (ENSOMYG00000017702) ENSOMYG00000071026 ENSOMYG00000017242 npepl1 (ENSOMYG00000017146) Oncorhynchus_a ANCESTRAL SPECIES 3 ENSGT00940000158675.b.b ENSGT00940000160528.a.d ##8 ENSGT00940000156890.a.a ##9 ENSGT00940000154307.D.j ##10 ENSGT00940000158956.d.a ##12 ENSGT00940000154770.wb ENSGT00940000158208.a.b.a ##13 ENSGT00390000017840.h ENSGT00950000182905.a.a.b.d ENSGT00390000005536.m ENSGT00940000158593.a.c ENSGT00390000016940.c.a.b.c.b ENSGT00390000015124 ENSGT00940000160203.b ENSGT00940000154457.a.b.j ##22 ENSGT00940000154457.a.a.a.a.a.b ##22 ENSGT00950000183188.A.a.a.f ##20 ENSGT00940000159517.c ENSGT00390000002944.c.b ##19 ENSGT00940000166043.d ENSGT00530000063607.a.n.b ##16 ENSGT00390000002215.j.b ENSGT01050000244940.a.a.g.a.a ##15 ENSGT00940000159587.l ENSGT01040000240451.a.b.a.b.a.a ##14 ENSGT00940000154276.g.a ENSGT00940000155330.c.f ENSGT01000000221659 ENSGT01000000214440.B.d ENSGT00530000063255.A.k ENSGT00940000155569.a.a.h Coho salmon MODERN SPECIES ENSOKIG00005003443 ##8 PIP4K2C (ENSOKIG00005003471) ##9 GPR182 (ENSOKIG00005003575) ##10 AGAP2 (ENSOKIG00005003591) ##12 ENSOKIG00005003607 cdk4 (ENSOKIG00005003611) MARCHF9 (ENSOKIG00005003617) ##13 ENSOKIG00005003622 CYP27B1 (ENSOKIG00005003640) mcrs1 (ENSOKIG00005003686) MMP19 (ENSOKIG00005003697) ENSOKIG00005003704 timeless (ENSOKIG00005003732) prph (ENSOKIG00005003787) ENSOKIG00005003801 ##22 ENSOKIG00005003813 ##22 ENSOKIG00005003819 ##20 ENSOKIG00005003829 CDK2 (ENSOKIG00005003833) ENSOKIG00005003857 ##19 ENSOKIG00005003886 ENSOKIG00005003895 ##16 ENSOKIG00005003904 TMBIM6 (ENSOKIG00005003910) ##15 AVIL (ENSOKIG00005003921) CTDSP2 (ENSOKIG00005003944) ##14 HIGD1A (ENSOKIG00005003974) ENSOKIG00005004009 STX16 (ENSOKIG00005004161) npepl1 (ENSOKIG00005004189) ctsz (ENSOKIG00005004239) Huchen MODERN SPECIES 1241 prph (ENSHHUG00000019277) ENSHHUG00000019011 ##22 ENSHHUG00000019003 ##22 ENSHHUG00000018859 ##20 cdk2 (ENSHHUG00000018828) gdf11 (ENSHHUG00000018806) ENSHHUG00000018804 ENSHHUG00000018792 ENSHHUG00000018783 ##16 ENSHHUG00000018738 TMBIM6 (ENSHHUG00000018627) ##15 avil (ENSHHUG00000017576) CTDSP2 (ENSHHUG00000017515) ##14 HIGD1A (ENSHHUG00000017494) slc11a2 (ENSHHUG00000016771) STX16 (ENSHHUG00000016740) npepl1 (ENSHHUG00000016677) Salmoninae ANCESTRAL SPECIES 2162 ENSGT00950000183165.b.b.a.a ENSGT00940000154457.a.a.a.a.b ##22 Salmoninae_a ANCESTRAL SPECIES 15 ENSGT01000000214440.B.c ENSGT00940000161297 ENSGT00940000155330.c.e ENSGT00940000154276.g.b ENSGT01040000240451.a.b.a.b.a.b ##14 ENSGT00940000159587.k ENSGT01050000244940.a.a.g.a.b ##15 ENSGT00390000002215.j.a ENSGT00530000063607.a.n.a ##16 ENSGT00940000154971.v ENSGT00940000166043.c ENSGT00390000002944.c.a ##19 ENSGT00940000159517.d ENSGT00950000183188.A.a.a.e ##20 ENSGT00950000183165.b.b.a.a ENSGT00940000154457.a.a.a.a.b ##22 ENSGT00940000154457.a.b.i ##22 ENSGT00940000160203.a ENSGT00390000016940.c.a.b.d ENSGT00940000158593.a.d ENSGT00390000003749 ENSGT00390000005536.n ENSGT00950000182905.a.a.b.c ENSGT00390000017840.g ENSGT00940000158208.a.b.b ##13 ENSGT00940000154770.vb ENSGT00940000160351.f ENSGT00940000158956.d.b ##12 ENSGT00990000211052 ENSGT00940000160528.a.c ##8 ENSGT00940000158675.b.a Salmo ANCESTRAL SPECIES 42 ENSGT00940000161297 ENSGT00940000155330.c.e ENSGT00940000154276.g.b ENSGT01040000240451.a.b.a.b.a.b ##14 ENSGT00940000159587.k ENSGT01050000244940.a.a.g.a.b ##15 ENSGT00390000002215.j.a ENSGT00530000063607.a.n.a ##16 ENSGT00940000154971.v ENSGT00940000166043.c ENSGT00390000002944.c.a ##19 ENSGT00940000159517.d ENSGT00950000183188.A.a.a.e ##20 ENSGT00940000154457.a.a.a.a.a.a ##22 ENSGT00950000183165.b.b.a.a.b ENSGT00940000154457.a.a.a.a.b ##22 ENSGT00940000154457.a.b.i ##22 ENSGT00940000160203.a ENSGT00390000016940.c.a.b.d ENSGT00940000158593.a.d ENSGT00390000003749 ENSGT00390000005536.n ENSGT00950000182905.a.a.b.c ENSGT00390000017840.g ENSGT00940000158208.a.b.b ##13 ENSGT00940000154770.vb ENSGT00940000160351.f ENSGT00940000158956.d.b ##12 ENSGT00990000211052 ENSGT00940000160528.a.c ##8 ENSGT00940000158675.b.a River trout MODERN SPECIES 7 STX16 (ENSSTUG00000015167) EEF1AKMT3 (ENSSTUG00000015200) slc11a2 (ENSSTUG00000015227) ENSSTUG00000015520 ENSSTUG00000015526 ##14 avil (ENSSTUG00000015750) TMBIM6 (ENSSTUG00000018856) ##15 ENSSTUG00000019264 ENSSTUG00000019273 ##16 ENSSTUG00000019341 gdf11 (ENSSTUG00000019356) sarnp (ENSSTUG00000019366) ##19 cdk2 (ENSSTUG00000019455) pmela (ENSSTUG00000019493) ##20 ENSSTUG00000019504 TUBA4B (ENSSTUG00000019519) ##22 ENSSTUG00000019623 ##22 ENSSTUG00000019639 prph (ENSSTUG00000019642) ENSSTUG00000019680 MMP19 (ENSSTUG00000019690) suox (ENSSTUG00000019706) ENSSTUG00000019716 ENSSTUG00000019728 mcrs1 (ENSSTUG00000019739) cyp27b1 (ENSSTUG00000019763) mettl1 (ENSSTUG00000020097) MARCHF9 (ENSSTUG00000020124) ##13 cdk4 (ENSSTUG00000020137) TSPAN31 (ENSSTUG00000002246) AGAP2 (ENSSTUG00000002929) ##12 Oncorhynchus ANCESTRAL SPECIES 882 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.a.a.b ##21 ENSGT00940000154457.a.a.a.a.b ##22 Rainbow trout MODERN SPECIES 28 slc11a2 (ENSOMYG00000047677) ENSOMYG00000047573 ENSOMYG00000047571 ##14 ENSOMYG00000047558 ENSOMYG00000047520 ##15 ENSOMYG00000051097 ENSOMYG00000060775 ENSOMYG00000047510 ##16 ENSOMYG00000047506 ENSOMYG00000047503 ENSOMYG00000047499 ##19 ENSOMYG00000047493 ENSOMYG00000048658 ENSOMYG00000047480 ##20 ENSOMYG00000070767 ##21 ENSOMYG00000056942 ##22 ENSOMYG00000073921 ##31 ENSOMYG00000047471 ##22 ENSOMYG00000047467 ENSOMYG00000073139 ENSOMYG00000075691 ENSOMYG00000047457 ENSOMYG00000047454 ENSOMYG00000047452 ENSOMYG00000047434 ENSOMYG00000047410 ENSOMYG00000049565 ##31 MARCHF9 (ENSOMYG00000047409) ##13 CDK4 (ENSOMYG00000047397) TSPAN31 (ENSOMYG00000047383) AGAP2 (ENSOMYG00000047366) ##12 Acanthomorphata ANCESTRAL SPECIES 489 ENSGT00950000183165.b.b.a.a ENSGT00940000154457.a.a.a.a ##22 ENSGT00940000154457.a.b ##22 Cod MODERN SPECIES ENSGMOG00000003301 srpk1b (ENSGMOG00000035260) ENSGMOG00000027858 ENSGMOG00000032596 ENSGMOG00000022810 ENSGMOG00000029848 ada (ENSGMOG00000011406) #32 ENSGMOG00000020076 ttpal (ENSGMOG00000011416) #29 hnf4a (ENSGMOG00000011421) #28 fitm2 (ENSGMOG00000011427) #26 GDAP1L1 (ENSGMOG00000011433) #25 ENSGMOG00000011467 #19 jph2 (ENSGMOG00000011440) #24 ENSGMOG00000035100 ENSGMOG00000022382 ##22 ENSGMOG00000011456 #20 ENSGMOG00000011475 #17 kansl2 (ENSGMOG00000011485) ENSGMOG00000029952 ENSGMOG00000030202 ENSGMOG00000034634 #16 ENSGMOG00000011496 #15 ctdsp2 (ENSGMOG00000011507) #14 ENSGMOG00000011514 ENSGMOG00000036947 ENSGMOG00000030863 MARCHF9 (ENSGMOG00000011529) #13 tspan31 (ENSGMOG00000022298) agap2 (ENSGMOG00000011545) #12 ENSGMOG00000033443 #11 Euacanthomorphacea ANCESTRAL SPECIES 515 ENSGT00940000154457.a.a.a.a ##22 ENSGT00940000154457.a.b ##22 Percomorphaceae ANCESTRAL SPECIES 451 ENSGT00940000154457.a.a.a.a ##22 ENSGT00940000154457.a.b ##22 Percomorphaceae_B ANCESTRAL SPECIES 309 ENSGT00940000154457.a.a.a.a ##22 ENSGT00940000154457.a.b ##22 Ovalentaria ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.a ##22 Atherinomorphae ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.a ##22 Cyprinodontiformes ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.a ##22 Cyprinodontoidei ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.a ##22 NAME_4 ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.a ##22 Sheepshead minnow MODERN SPECIES 899 adamts3 (ENSCVAG00000002061) NPFFR2 (ENSCVAG00000002068) ENSCVAG00000002074 ENSCVAG00000002078 olfml2ba (ENSCVAG00000002082) atf6 (ENSCVAG00000002095) ENSCVAG00000002107 lmx1a (ENSCVAG00000002116) ENSCVAG00000002120 ##22 ENSCVAG00000002128 sele (ENSCVAG00000002142) si:dkey-51e6.1 (ENSCVAG00000002147) si:dkey-97o5.1 (ENSCVAG00000002156) scyl3 (ENSCVAG00000000849) ENSCVAG00000002169 trabd2b (ENSCVAG00000002179) Aplocheiloidei ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.a ##22 Turquoise killifish MODERN SPECIES 1616 IGDCC4 (ENSNFUG00015004491) SCAMP5 (ENSNFUG00015004482) LOXL1 (ENSNFUG00015004478) ENSNFUG00015004474 C18H15ORF59 (ENSNFUG00015004469) cd276 (ENSNFUG00015004464) UBL7 (ENSNFUG00015004456) tent4b (ENSNFUG00015004422) HEATR3 (ENSNFUG00015004394) SDR42E1 (ENSNFUG00015004380) WTIP (ENSNFUG00015004367) GPI (ENSNFUG00015004311) KIAA0355 (ENSNFUG00015004264) ss18l2 (ENSNFUG00015004246) lsm14ab (ENSNFUG00015023333) ENSNFUG00015023298 ##22 ENSNFUG00015023286 kctd15a (ENSNFUG00015023278) ENSNFUG00015023277 PEPD (ENSNFUG00015023263) ADAMTSL7 (ENSNFUG00015023225) ENSNFUG00015023203 larp6a (ENSNFUG00015023196) TM2D3 (ENSNFUG00015023191) TARSL2 (ENSNFUG00015023046) ulk3 (ENSNFUG00015023023) ENSNFUG00015023019 CPLX3 (ENSNFUG00015023016) CSK (ENSNFUG00015022989) ENSNFUG00015022980 EDC3 (ENSNFUG00015022976) Ovalentaria_B ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.a ##22 Pomacentridae ANCESTRAL SPECIES 100 ENSGT00810000125541 ENSGT00940000155289.C ENSGT00940000162649.e.b ENSGT00940000162649.f.b ENSGT00730000111029.b ENSGT00940000155698.C ENSGT00390000014700.b.a.b.b.a ENSGT00390000014595.a.b ENSGT00940000165851 ENSGT00940000154318.B ENSGT00390000015505 ENSGT01010000222360.D.a ENSGT00940000153222.a.b.a ENSGT00940000160292 ENSGT00950000183205.b.a.b.a.a ENSGT00940000154457.a.a.a.a ##22 ENSGT00940000160271 ENSGT00940000176920 ENSGT00940000158693.A ENSGT00950000183183.a ENSGT00940000156833.b ENSGT00940000155575.i.b ENSGT00940000157054.c.a ENSGT00940000156505.t Bicolor damselfish MODERN SPECIES 894 ENSSPAG00000007924 rnps1 (ENSSPAG00000009383) ENSSPAG00000009404 ENSSPAG00000009425 ENSSPAG00000009452 tspan4b (ENSSPAG00000009466) ENSSPAG00000009497 nosip (ENSSPAG00000009511) rcn3 (ENSSPAG00000009539) lin7b (ENSSPAG00000009551) snrnp70 (ENSSPAG00000009563) ENSSPAG00000009578 ENSSPAG00000009602 ##22 ABCC1 (ENSSPAG00000009624) ENSSPAG00000009679 trpm4a (ENSSPAG00000009692) zgc:86896 (ENSSPAG00000009751) wipi1 (ENSSPAG00000009786) SLC16A6 (ENSSPAG00000009813) ENSSPAG00000009842 ENSSPAG00000009859 dhps (ENSSPAG00000009870) NHERF2 (ENSSPAG00000009924) sstr5 (ENSSPAG00000009935) ENSSPAG00000009943 ENSSPAG00000009958 Pomacentridae_A ANCESTRAL SPECIES 105 ENSGT00810000125541 ENSGT00940000155289.C ENSGT00940000162649.e.b ENSGT00940000162649.f.b.c ENSGT00730000111029.b ENSGT00940000155698.C ENSGT00390000014700.b.a.b.b.a ENSGT00390000014595.a.b ENSGT00940000165851 ENSGT00940000154318.B ENSGT00390000015505 ENSGT01010000222360.D.a ENSGT00940000153222.a.b.a ENSGT00940000160292 ENSGT00950000183205.b.a.b.a.a ENSGT00940000154457.a.a.a.a ##22 ENSGT00940000160271 ENSGT00940000176920 ENSGT00940000158693.A ENSGT00950000183183.a ENSGT00940000156833.b ENSGT00940000155575.i.b ENSGT00940000157054.c.a ENSGT00940000156505.t Amphiprion ANCESTRAL SPECIES 31 ENSGT00810000125541 ENSGT00940000155289.C ENSGT00940000162649.e.b ENSGT00940000162649.f.b.c ENSGT00730000111029.b ENSGT00940000155698.C ENSGT00390000014700.b.a.b.b.a ENSGT00390000014595.a.b ENSGT00940000165851 ENSGT00940000154318.B ENSGT00390000015505 ENSGT01010000222360.D.a ENSGT00940000153222.a.b.a ENSGT00940000160292 ENSGT00950000183205.b.a.b.a.a ENSGT00940000154457.a.a.a.a ##22 ENSGT00940000160271 ENSGT00940000176920 ENSGT00940000158693.A ENSGT00950000183183.a ENSGT00940000156833.b ENSGT00940000155575.i.b ENSGT00940000157054.c.a ENSGT00940000156505.t Clown anemonefish MODERN SPECIES 2894 rcn3 (ENSAOCG00000000728) lin7b (ENSAOCG00000011692) snrnp70 (ENSAOCG00000011672) ENSAOCG00000011616 ENSAOCG00000002287 ##22 ABCC1 (ENSAOCG00000011529) ENSAOCG00000011393 Percomorphaceae_C ANCESTRAL SPECIES 247 ENSGT00940000154457.a.a.a.a ##22 ENSGT00940000154457.a.b ##22 Eupercaria ANCESTRAL SPECIES 209 ENSGT00940000154457.a.a.a.a ##22 ENSGT00940000154457.a.b ##22 Eupecaria_A ANCESTRAL SPECIES 210 ENSGT00940000154457.a.a.a.a ##22 ENSGT00940000154457.a.b ##22 Eupecaria_B DUPLICATION Eupecaria_B ANCESTRAL SPECIES 190 ENSGT00940000154457.a.a.a.a.c ##22 ENSGT00940000154457.a.b ##22 Perciformes ANCESTRAL SPECIES 196 ENSGT00940000154457.a.a.a.a.c ##22 ENSGT00940000154457.a.b ##22 Perciformes_a ANCESTRAL SPECIES 291 ENSGT00940000154457.a.a.a.a.c ##22 ENSGT00940000154457.a.b ##22 Pike perch DUPLICATION Pike perch DUPLICATION Pike perch MODERN SPECIES 103 ENSSLUG00000002866 ENSSLUG00000002861 ccn5 (ENSSLUG00000002859) #33 ada (ENSSLUG00000002481) #32 pkig (ENSSLUG00000002403) #30 ttpal (ENSSLUG00000002394) #29 hnf4a (ENSSLUG00000002372) #28 R3HDML (ENSSLUG00000002362) #27 fitm2 (ENSSLUG00000002359) #26 GDAP1L1 (ENSSLUG00000002357) #25 jph2 (ENSSLUG00000002353) #24 ENSSLUG00000002351 ##22 TUBA4B (ENSSLUG00000002342) ##22 ENSSLUG00000002336 ##22 ENSSLUG00000002329 ##22 ENSSLUG00000002305 ##22 tuba1c (ENSSLUG00000002293) ##21 pmelb (ENSSLUG00000002252) #20 sarnp (ENSSLUG00000002239) #19 ccnt1 (ENSSLUG00000002225) #17 kansl2 (ENSSLUG00000002197) ENSSLUG00000002179 #16 TMBIM6 (ENSSLUG00000002156) #15 ctdsp2 (ENSSLUG00000002138) #14 SLC11A2 (ENSSLUG00000001755) MARCHF9 (ENSSLUG00000024754) #13 tspan31 (ENSSLUG00000024752) agap2 (ENSSLUG00000024722) #12 Pike perch MODERN SPECIES 103 ENSSLUG00000024675 #9 gpr182 (ENSSLUG00000024703) #10 ZBTB39 (ENSSLUG00000024706) #11 agap2 (ENSSLUG00000024722) #12 tspan31 (ENSSLUG00000024752) MARCHF9 (ENSSLUG00000024754) #13 SLC11A2 (ENSSLUG00000001755) ctdsp2 (ENSSLUG00000002138) #14 TMBIM6 (ENSSLUG00000002156) #15 ENSSLUG00000002179 #16 kansl2 (ENSSLUG00000002197) ccnt1 (ENSSLUG00000002225) #17 sarnp (ENSSLUG00000002239) #19 pmelb (ENSSLUG00000002252) #20 tuba1c (ENSSLUG00000002293) ##21 ENSSLUG00000002305 ##22 ENSSLUG00000002329 ##22 ENSSLUG00000002336 ##22 TUBA4B (ENSSLUG00000002342) ##22 ENSSLUG00000002351 ##22 jph2 (ENSSLUG00000002353) #24 GDAP1L1 (ENSSLUG00000002357) #25 fitm2 (ENSSLUG00000002359) #26 R3HDML (ENSSLUG00000002362) #27 hnf4a (ENSSLUG00000002372) #28 ttpal (ENSSLUG00000002394) #29 pkig (ENSSLUG00000002403) #30 ada (ENSSLUG00000002481) #32 ccn5 (ENSSLUG00000002859) #33 ENSSLUG00000002861 ENSSLUG00000002866 Pike perch DUPLICATION Pike perch MODERN SPECIES 103 tcea2 (ENSSLUG00000024533) SOX18 (ENSSLUG00000024540) xkr7b (ENSSLUG00000024542) CCM2L (ENSSLUG00000024547) CABLES2 (ENSSLUG00000024551) ENSSLUG00000024556 ENSSLUG00000024561 ENSSLUG00000024562 ENSSLUG00000024566 hsd17b10 (ENSSLUG00000024569) FAM120C (ENSSLUG00000024576) IDH3G (ENSSLUG00000024594) AVPR2 (ENSSLUG00000024631) slc16a1b (ENSSLUG00000024633) lima1a (ENSSLUG00000024640) #7 ENSSLUG00000024644 ##22 spryd3 (ENSSLUG00000024652) igfbp6b (ENSSLUG00000024663) #8 ENSSLUG00000024675 #9 gpr182 (ENSSLUG00000024703) #10 ZBTB39 (ENSSLUG00000024706) #11 agap2 (ENSSLUG00000024722) #12 tspan31 (ENSSLUG00000024752) MARCHF9 (ENSSLUG00000024754) #13 SLC11A2 (ENSSLUG00000001755) ctdsp2 (ENSSLUG00000002138) #14 TMBIM6 (ENSSLUG00000002156) #15 ENSSLUG00000002179 #16 kansl2 (ENSSLUG00000002197) ccnt1 (ENSSLUG00000002225) #17 sarnp (ENSSLUG00000002239) #19 Pike perch MODERN SPECIES 103 ENSSLUG00000002866 ENSSLUG00000002861 ccn5 (ENSSLUG00000002859) #33 ada (ENSSLUG00000002481) #32 pkig (ENSSLUG00000002403) #30 ttpal (ENSSLUG00000002394) #29 hnf4a (ENSSLUG00000002372) #28 R3HDML (ENSSLUG00000002362) #27 fitm2 (ENSSLUG00000002359) #26 GDAP1L1 (ENSSLUG00000002357) #25 jph2 (ENSSLUG00000002353) #24 ENSSLUG00000002351 ##22 TUBA4B (ENSSLUG00000002342) ##22 ENSSLUG00000002336 ##22 ENSSLUG00000002329 ##22 ENSSLUG00000002305 ##22 tuba1c (ENSSLUG00000002293) ##21 pmelb (ENSSLUG00000002252) #20 sarnp (ENSSLUG00000002239) #19 ccnt1 (ENSSLUG00000002225) #17 kansl2 (ENSSLUG00000002197) ENSSLUG00000002179 #16 TMBIM6 (ENSSLUG00000002156) #15 ctdsp2 (ENSSLUG00000002138) #14 SLC11A2 (ENSSLUG00000001755) MARCHF9 (ENSSLUG00000024754) #13 tspan31 (ENSSLUG00000024752) agap2 (ENSSLUG00000024722) #12 ZBTB39 (ENSSLUG00000024706) #11 Eupecaria_B DUPLICATION Eupecaria_B ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.a.d.a ##22 Perciformes DUPLICATION Perciformes ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.a.d.a.a ##22 Cottioidei DUPLICATION Cottioidei ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.a.d.a.a.a ##22 Lumpfish MODERN SPECIES 22 gpr182 (ENSCLMG00005019756) #10 ENSCLMG00005019755 #11 agap2 (ENSCLMG00005019577) #12 tspan31 (ENSCLMG00005019572) MARCHF9 (ENSCLMG00005019571) #13 SLC11A2 (ENSCLMG00005017747) ctdsp2 (ENSCLMG00005017716) #14 TMBIM6 (ENSCLMG00005017714) #15 ENSCLMG00005017713 #16 kansl2 (ENSCLMG00005017711) ccnt1 (ENSCLMG00005017710) #17 sarnp (ENSCLMG00005017708) #19 pmelb (ENSCLMG00005017707) #20 tuba1c (ENSCLMG00005017706) ##21 ENSCLMG00005017705 ##22 TUBA4B (ENSCLMG00005017632) ##22 ENSCLMG00005017631 #21 ENSCLMG00005017628 jph2 (ENSCLMG00005017627) #24 GDAP1L1 (ENSCLMG00005017626) #25 fitm2 (ENSCLMG00005017624) #26 hnf4a (ENSCLMG00005017552) #28 ttpal (ENSCLMG00005017546) #29 pkig (ENSCLMG00005017544) #30 ada (ENSCLMG00005017044) #32 ccn5 (ENSCLMG00005017030) #33 ENSCLMG00005017024 ugt5e1 (ENSCLMG00005017018) pfkfb1 (ENSCLMG00005017017) #34 ENSCLMG00005016975 #35 gdi1 (ENSCLMG00005016942) #36 Stickleback MODERN SPECIES 11 FAM120C (ENSGACG00000010554) hsd17b10 (ENSGACG00000010525) ENSGACG00000010523 ENSGACG00000010520 CCM2L (ENSGACG00000010511) xkr7b (ENSGACG00000010506) SOX18 (ENSGACG00000010505) tcea2 (ENSGACG00000010495) rgs19 (ENSGACG00000010490) FAM187A (ENSGACG00000010484) oprl1 (ENSGACG00000010479) NPBWR1 (ENSGACG00000010477) RAB29 (ENSGACG00000010473) cry3a (ENSGACG00000010460) ENSGACG00000010457 ENSGACG00000010436 ##22 lama5 (ENSGACG00000010405) adrm1 (ENSGACG00000010370) DNAJC5 (ENSGACG00000010366) ENSGACG00000010359 tpd52l2b (ENSGACG00000010324) ppdpfb (ENSGACG00000010310) ENSGACG00000010308 ptk6b (ENSGACG00000010303) ENSGACG00000010298 nol4lb (ENSGACG00000010294) commd7 (ENSGACG00000010283) dnmt3bb.1 (ENSGACG00000010273) dnmt3bb.2 (ENSGACG00000010262) mapre1b (ENSGACG00000010256) acss2 (ENSGACG00000010216) Cottioidei ANCESTRAL SPECIES 2 ENSGT00390000017567 ENSGT00940000156650.i #37 ENSGT00950000182994.B.a.a.a #36 ENSGT00940000162980 #35 ENSGT00950000182835.c.c.g.b #34 ENSGT00940000166720 ENSGT00940000155094.b ENSGT00940000160207.b #33 ENSGT00950000183113.a.b #32 ENSGT00390000002707 #30 ENSGT00940000155407 #29 ENSGT00940000157965.d #28 ENSGT00530000063693.b #26 ENSGT00940000160178 #25 ENSGT00940000159411.b #24 ENSGT00940000154457.a.a.a.a.d.a.a.b ##22 ENSGT00950000183188.A.a.b #20 ENSGT00390000002944 #19 ENSGT00940000159544 #17 ENSGT00940000155808 ENSGT00530000063607.a #16 ENSGT01050000244940.a.a #15 ENSGT01040000240451.a.b.a #14 ENSGT00940000155330.b ENSGT00940000158208.a.a #13 ENSGT00940000160351 ENSGT00940000158956.c #12 ENSGT00940000160722 #11 ENSGT00940000154307.D #10 ENSGT00940000156890.a.b #9 ENSGT01100000263484.B.b.a Stickleback DUPLICATION Stickleback DUPLICATION Stickleback DUPLICATION Stickleback MODERN SPECIES 11 ENSGACG00000011772 #9 ENSGACG00000011767 ZBTB39 (ENSGACG00000011765) #11 agap2 (ENSGACG00000011751) #12 tspan31 (ENSGACG00000011730) MARCHF9 (ENSGACG00000011728) #13 SLC11A2 (ENSGACG00000011691) ctdsp2 (ENSGACG00000011678) #14 TMBIM6 (ENSGACG00000011650) #15 ENSGACG00000011642 #16 kansl2 (ENSGACG00000011630) ccnt1 (ENSGACG00000011626) #17 sarnp (ENSGACG00000011615) #19 pmelb (ENSGACG00000011605) #20 TUBA4B (ENSGACG00000011595) ##22 tuba2 (ENSGACG00000011587) ##22 tuba1c (ENSGACG00000011552) ##21 TUBA4B (ENSGACG00000011524) ##22 jph2 (ENSGACG00000011519) #24 GDAP1L1 (ENSGACG00000011509) #25 fitm2 (ENSGACG00000011502) #26 hnf4a (ENSGACG00000011485) #28 ttpal (ENSGACG00000011479) #29 pkig (ENSGACG00000011477) #30 ada (ENSGACG00000011456) #32 ccn5 (ENSGACG00000011453) #33 ENSGACG00000011450 ugt5e1 (ENSGACG00000011442) pfkfb1 (ENSGACG00000011410) #34 ENSGACG00000011406 #35 gdi1 (ENSGACG00000011384) #36 Stickleback MODERN SPECIES 11 hnf4a (ENSGACG00000011485) #28 ttpal (ENSGACG00000011479) #29 pkig (ENSGACG00000011477) #30 ada (ENSGACG00000011456) #32 ccn5 (ENSGACG00000011453) #33 ENSGACG00000011450 ugt5e1 (ENSGACG00000011442) pfkfb1 (ENSGACG00000011410) #34 ENSGACG00000011406 #35 gdi1 (ENSGACG00000011384) #36 atp6ap1b (ENSGACG00000011378) #37 taf8 (ENSGACG00000011366) camk1gb (ENSGACG00000011358) mical1 (ENSGACG00000011353) src (ENSGACG00000011349) ENSGACG00000011345 ##22 pink1 (ENSGACG00000011338) ENSGACG00000011331 ENSGACG00000011309 fam43b (ENSGACG00000011306) mul1b (ENSGACG00000011302) VWA5B1 (ENSGACG00000011296) ddx19a (ENSGACG00000011283) cptp (ENSGACG00000011282) ints11 (ENSGACG00000011260) ENSGACG00000011257 ENSGACG00000011252 ACAP3 (ENSGACG00000011244) HIPK1 (ENSGACG00000011240) sdf4 (ENSGACG00000011217) c1qtnf12 (ENSGACG00000011209) Stickleback MODERN SPECIES 11 ENSGACG00000011406 #35 pfkfb1 (ENSGACG00000011410) #34 ugt5e1 (ENSGACG00000011442) ENSGACG00000011450 ccn5 (ENSGACG00000011453) #33 ada (ENSGACG00000011456) #32 pkig (ENSGACG00000011477) #30 ttpal (ENSGACG00000011479) #29 hnf4a (ENSGACG00000011485) #28 fitm2 (ENSGACG00000011502) #26 GDAP1L1 (ENSGACG00000011509) #25 jph2 (ENSGACG00000011519) #24 TUBA4B (ENSGACG00000011524) ##22 tuba1c (ENSGACG00000011552) ##21 tuba2 (ENSGACG00000011587) ##22 TUBA4B (ENSGACG00000011595) ##22 pmelb (ENSGACG00000011605) #20 sarnp (ENSGACG00000011615) #19 ccnt1 (ENSGACG00000011626) #17 kansl2 (ENSGACG00000011630) ENSGACG00000011642 #16 TMBIM6 (ENSGACG00000011650) #15 ctdsp2 (ENSGACG00000011678) #14 SLC11A2 (ENSGACG00000011691) MARCHF9 (ENSGACG00000011728) #13 tspan31 (ENSGACG00000011730) agap2 (ENSGACG00000011751) #12 ZBTB39 (ENSGACG00000011765) #11 ENSGACG00000011767 ENSGACG00000011772 #9 ENSGACG00000011777 Stickleback MODERN SPECIES 11 ZBTB39 (ENSGACG00000011765) #11 agap2 (ENSGACG00000011751) #12 tspan31 (ENSGACG00000011730) MARCHF9 (ENSGACG00000011728) #13 SLC11A2 (ENSGACG00000011691) ctdsp2 (ENSGACG00000011678) #14 TMBIM6 (ENSGACG00000011650) #15 ENSGACG00000011642 #16 kansl2 (ENSGACG00000011630) ccnt1 (ENSGACG00000011626) #17 sarnp (ENSGACG00000011615) #19 pmelb (ENSGACG00000011605) #20 TUBA4B (ENSGACG00000011595) ##22 tuba2 (ENSGACG00000011587) ##22 tuba1c (ENSGACG00000011552) ##21 TUBA4B (ENSGACG00000011524) ##22 jph2 (ENSGACG00000011519) #24 GDAP1L1 (ENSGACG00000011509) #25 fitm2 (ENSGACG00000011502) #26 hnf4a (ENSGACG00000011485) #28 ttpal (ENSGACG00000011479) #29 pkig (ENSGACG00000011477) #30 ada (ENSGACG00000011456) #32 ccn5 (ENSGACG00000011453) #33 ENSGACG00000011450 ugt5e1 (ENSGACG00000011442) pfkfb1 (ENSGACG00000011410) #34 ENSGACG00000011406 #35 gdi1 (ENSGACG00000011384) #36 atp6ap1b (ENSGACG00000011378) #37 taf8 (ENSGACG00000011366) Perciformes_a ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.a.d.a.a ##22 Channel bull blenny MODERN SPECIES 21 ugt5e1 (ENSCGOG00000005172) ENSCGOG00000005171 pfkfb1 (ENSCGOG00000004986) #34 ENSCGOG00000004977 ccn5 (ENSCGOG00000004975) #33 ada (ENSCGOG00000004781) #32 pkig (ENSCGOG00000004774) #30 ttpal (ENSCGOG00000004769) #29 hnf4a (ENSCGOG00000004571) #28 R3HDML (ENSCGOG00000004549) #27 fitm2 (ENSCGOG00000004544) #26 GDAP1L1 (ENSCGOG00000004529) #25 jph2 (ENSCGOG00000004527) #24 ENSCGOG00000004524 ENSCGOG00000004523 ##21 tuba2 (ENSCGOG00000003903) ##22 ENSCGOG00000016764 ENSCGOG00000016692 ##22 pmelb (ENSCGOG00000016690) #20 sarnp (ENSCGOG00000016688) #19 ccnt1 (ENSCGOG00000016683) #17 kansl2 (ENSCGOG00000016654) ENSCGOG00000016646 #16 TMBIM6 (ENSCGOG00000016617) #15 ctdsp2 (ENSCGOG00000016612) #14 ENSCGOG00000016611 SLC11A2 (ENSCGOG00000013880) MARCHF9 (ENSCGOG00000013837) #13 tspan31 (ENSCGOG00000013833) agap2 (ENSCGOG00000013687) #12 ENSCGOG00000013677 #11 Perciformes DUPLICATION Perciformes ANCESTRAL SPECIES 4 ENSGT00950000182994.B.a.a.a #36 ENSGT00940000162980 #35 ENSGT00950000182835.c.c.g.b #34 ENSGT00940000166720 ENSGT00940000155094.b ENSGT00940000160207.b #33 ENSGT00950000183113.a.b #32 ENSGT00390000002707 #30 ENSGT00940000155407 #29 ENSGT00940000157965.d #28 ENSGT00940000161086 #27 ENSGT00530000063693.b #26 ENSGT00940000160178 #25 ENSGT00940000159411.b #24 ENSGT00950000183165.b.a.f ENSGT00940000154457.a.a.a.a.d.a.b.a ##22 ENSGT00950000183188.A.a.b #20 ENSGT00390000002944 #19 ENSGT00940000159544 #17 ENSGT00940000155808 ENSGT00530000063607.a #16 ENSGT01050000244940.a.a #15 ENSGT01040000240451.a.b.a #14 ENSGT00940000155330.b ENSGT00940000158208.a.a #13 ENSGT00940000160351 ENSGT00940000158956.c #12 ENSGT00940000160722 #11 ENSGT00940000154307.D #10 ENSGT00940000156890.a.b #9 ENSGT00940000160528.b #8 Cottioidei ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.a.d.a.b.a ##22 Lumpfish MODERN SPECIES 22 TFCP2 (ENSCLMG00005019199) CSRNP2 (ENSCLMG00005019271) itga5 (ENSCLMG00005019276) RAPGEF3 (ENSCLMG00005019505) slc48a1a (ENSCLMG00005020580) SLC26A9 (ENSCLMG00005000138) PLXNA2 (ENSCLMG00005000356) rca2.1 (ENSCLMG00005002768) ENSCLMG00005002775 ptpn22 (ENSCLMG00005002778) RSBN1 (ENSCLMG00005002784) ENSCLMG00005002888 tmem269 (ENSCLMG00005002948) HSPG2 (ENSCLMG00005003076) agmat (ENSCLMG00005003634) ENSCLMG00005003638 ##22 pink1 (ENSCLMG00005003639) ENSCLMG00005003640 ENSCLMG00005003646 fam43b (ENSCLMG00005003696) ENSCLMG00005003697 mul1b (ENSCLMG00005003699) ENSCLMG00005003701 ddx19a (ENSCLMG00005003703) ENSCLMG00005003779 ubxn10 (ENSCLMG00005003780) cptp (ENSCLMG00005003781) ints11 (ENSCLMG00005003784) ENSCLMG00005003789 ENSCLMG00005003792 ACAP3 (ENSCLMG00005003803) Perciformes_a ANCESTRAL SPECIES 2 ENSGT00950000182994.B.a.a.a #36 ENSGT00940000162980 #35 ENSGT00950000182835.c.c.g.b #34 ENSGT00940000166720 ENSGT00940000155094.b ENSGT00940000160207.b #33 ENSGT00950000183113.a.b #32 ENSGT00390000002707 #30 ENSGT00940000155407 #29 ENSGT00940000157965.d #28 ENSGT00940000161086 #27 ENSGT00530000063693.b #26 ENSGT00940000160178 #25 ENSGT00940000159411.b #24 ENSGT00950000183165.b.a.f ENSGT00940000154457.a.a.a.a.d.a.b.a ##22 ENSGT00950000183188.A.a.b #20 ENSGT00390000002944 #19 ENSGT00940000159544 #17 ENSGT00940000155808 ENSGT00530000063607.a #16 ENSGT01050000244940.a.a #15 ENSGT01040000240451.a.b.a #14 ENSGT00940000155330.b ENSGT00940000158208.a.a #13 ENSGT00940000160351 ENSGT00940000158956.c #12 ENSGT00940000160722 #11 ENSGT00940000154307.D #10 ENSGT00940000156890.a.b #9 ENSGT00940000160528.b #8 Channel bull blenny MODERN SPECIES 21 pfkfb1 (ENSCGOG00000004986) #34 ENSCGOG00000004977 ccn5 (ENSCGOG00000004975) #33 ada (ENSCGOG00000004781) #32 pkig (ENSCGOG00000004774) #30 ttpal (ENSCGOG00000004769) #29 hnf4a (ENSCGOG00000004571) #28 R3HDML (ENSCGOG00000004549) #27 fitm2 (ENSCGOG00000004544) #26 GDAP1L1 (ENSCGOG00000004529) #25 jph2 (ENSCGOG00000004527) #24 ENSCGOG00000004524 ENSCGOG00000004523 ##21 tuba2 (ENSCGOG00000003903) ##22 ENSCGOG00000016764 ENSCGOG00000016692 ##22 pmelb (ENSCGOG00000016690) #20 sarnp (ENSCGOG00000016688) #19 ccnt1 (ENSCGOG00000016683) #17 kansl2 (ENSCGOG00000016654) ENSCGOG00000016646 #16 TMBIM6 (ENSCGOG00000016617) #15 ctdsp2 (ENSCGOG00000016612) #14 ENSCGOG00000016611 SLC11A2 (ENSCGOG00000013880) MARCHF9 (ENSCGOG00000013837) #13 tspan31 (ENSCGOG00000013833) agap2 (ENSCGOG00000013687) #12 ENSCGOG00000013677 #11 gpr182 (ENSCGOG00000013673) #10 ENSCGOG00000012697 #9 Perciformes ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.a.d.a.b.b ##22 Cottioidei ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.a.d.a.b.b ##22 Lumpfish MODERN SPECIES 22 ENSCLMG00005016975 #35 pfkfb1 (ENSCLMG00005017017) #34 ugt5e1 (ENSCLMG00005017018) ENSCLMG00005017024 ccn5 (ENSCLMG00005017030) #33 ada (ENSCLMG00005017044) #32 pkig (ENSCLMG00005017544) #30 ttpal (ENSCLMG00005017546) #29 hnf4a (ENSCLMG00005017552) #28 fitm2 (ENSCLMG00005017624) #26 GDAP1L1 (ENSCLMG00005017626) #25 jph2 (ENSCLMG00005017627) #24 ENSCLMG00005017628 ENSCLMG00005017631 #21 TUBA4B (ENSCLMG00005017632) ##22 ENSCLMG00005017705 ##22 tuba1c (ENSCLMG00005017706) ##21 pmelb (ENSCLMG00005017707) #20 sarnp (ENSCLMG00005017708) #19 ccnt1 (ENSCLMG00005017710) #17 kansl2 (ENSCLMG00005017711) ENSCLMG00005017713 #16 TMBIM6 (ENSCLMG00005017714) #15 ctdsp2 (ENSCLMG00005017716) #14 SLC11A2 (ENSCLMG00005017747) MARCHF9 (ENSCLMG00005019571) #13 tspan31 (ENSCLMG00005019572) agap2 (ENSCLMG00005019577) #12 ENSCLMG00005019755 #11 gpr182 (ENSCLMG00005019756) #10 ENSCLMG00005019758 #9 Eupecaria_C ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.a.d.a ##22 Gilthead seabream MODERN SPECIES 21 cd63 (ENSSAUG00010011797) letmd1 (ENSSAUG00010011791) zgc:56699 (ENSSAUG00010011789) nr4a1 (ENSSAUG00010011787) tamalin (ENSSAUG00010011779) dgkaa (ENSSAUG00010009293) rnf41 (ENSSAUG00010009251) ankrd52a (ENSSAUG00010008730) ENSSAUG00010008712 tuba1a (ENSSAUG00010008710) ##21 pmelb (ENSSAUG00010008705) #20 sarnp (ENSSAUG00010008698) #19 ENSSAUG00010008697 ENSSAUG00010008695 ##22 ENSSAUG00010008690 ##22 TUBA4B (ENSSAUG00010008679) ##22 jph2 (ENSSAUG00010008678) #24 GDAP1L1 (ENSSAUG00010008676) #25 fitm2 (ENSSAUG00010008674) #26 R3HDML (ENSSAUG00010008670) #27 hnf4a (ENSSAUG00010008665) #28 ttpal (ENSSAUG00010008662) #29 pkig (ENSSAUG00010008661) #30 ada (ENSSAUG00010008446) #32 ccn5 (ENSSAUG00010008438) #33 ENSSAUG00010008437 ENSSAUG00010008435 ENSSAUG00010008434 ENSSAUG00010008432 ENSSAUG00010008430 ENSSAUG00010008429 Eupecaria_B ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.a.d.b ##22 Eupecaria_C ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.a.d.b ##22 Gilthead seabream MODERN SPECIES 21 nemp1 (ENSSAUG00010011798) cd63 (ENSSAUG00010011797) letmd1 (ENSSAUG00010011791) zgc:56699 (ENSSAUG00010011789) nr4a1 (ENSSAUG00010011787) tamalin (ENSSAUG00010011779) dgkaa (ENSSAUG00010009293) rnf41 (ENSSAUG00010009251) ankrd52a (ENSSAUG00010008730) ENSSAUG00010008712 tuba1a (ENSSAUG00010008710) ##21 pmelb (ENSSAUG00010008705) #20 sarnp (ENSSAUG00010008698) #19 ENSSAUG00010008697 ENSSAUG00010008695 ##22 ENSSAUG00010008690 ##22 TUBA4B (ENSSAUG00010008679) ##22 jph2 (ENSSAUG00010008678) #24 GDAP1L1 (ENSSAUG00010008676) #25 fitm2 (ENSSAUG00010008674) #26 R3HDML (ENSSAUG00010008670) #27 hnf4a (ENSSAUG00010008665) #28 ttpal (ENSSAUG00010008662) #29 pkig (ENSSAUG00010008661) #30 ada (ENSSAUG00010008446) #32 ccn5 (ENSSAUG00010008438) #33 ENSSAUG00010008437 ENSSAUG00010008435 ENSSAUG00010008434 ENSSAUG00010008432 ENSSAUG00010008430 Otomorpha ANCESTRAL SPECIES 114 ENSGT01040000240451.a.b.a #14 ENSGT00940000159587 ENSGT01050000244940.a.a #15 ENSGT00390000002215.j ENSGT00530000063607.a #16 ENSGT00940000154971.v ENSGT00940000166043 ENSGT00390000002944 #19 ENSGT00940000159517 ENSGT00950000183188.A.a.a ##20 ENSGT00940000158593.a ENSGT00390000016940.c.a.b ENSGT00390000015124 ENSGT00940000160203 ENSGT00940000154457.b ##22 ENSGT00940000154457.a.a.a.a ##22 ENSGT00390000003749 ENSGT00390000005536 ENSGT01010000222336.b.a.a ENSGT00940000161997.b ENSGT00940000156785 ENSGT00940000155637 ENSGT00390000006330.a.b ENSGT01020000230633 ENSGT00940000156832 ENSGT00950000183167.a.b.b.b ENSGT00940000164745.i.a ENSGT00390000010523.d ENSGT00950000183038.a.b.a.h ENSGT00530000063734.b ENSGT00940000157144.c.b Otophysi ANCESTRAL SPECIES ENSGT00940000154457.a.a.a.a ##22 Cyprinoidei ANCESTRAL SPECIES 111 ENSGT00950000183188.A.a.a ##20 ENSGT00940000158593.a ENSGT00940000159517 ENSGT00390000002944 #19 ENSGT00940000160203 ENSGT00940000154457.b ##22 ENSGT00940000154457.a.a.a.a ##22 ENSGT00390000003749 ENSGT00390000005536 ENSGT00940000156785 ENSGT00940000155637 ENSGT00390000006330.a.b ENSGT01020000230633 ENSGT00950000182908.B.c.a ENSGT00940000161079 ENSGT00940000157144.c.a ENSGT01030000234623.a.a.a.a.a.d.a ENSGT00390000012914 ENSGT00940000159430 ENSGT00390000004215.a.b.a ENSGT00740000115534.a.a.fb.b ENSGT00940000156890.a.a.t ##9 Cyprininae ANCESTRAL SPECIES 784 ENSGT00940000158593.a.f ENSGT00950000183188.A.a.a ##20 ENSGT00940000159517.e ENSGT00390000002944.b #19 ENSGT00940000154457.a.a.a.a ##22 ENSGT00390000003749 ENSGT00390000005536.j ENSGT00940000156785.cb ENSGT00940000155637.hb.b Cyprininae_a ANCESTRAL SPECIES 667 ENSGT00940000158593.a.f ENSGT00950000183188.A.a.a ##20 ENSGT00940000159517.e ENSGT00390000002944.b #19 ENSGT00940000154457.a.a.a.a ##22 ENSGT00390000003749 ENSGT00390000005536.j Golden-line barbel MODERN SPECIES 605 prph (ENSSGRG00000003879) ENSSGRG00000003865 ##22 ENSSGRG00000003232 ##22 suox (ENSSGRG00000003205) mcrs1 (ENSSGRG00000002421) ENSSGRG00000002417 ENSSGRG00000002416 nab2 (ENSSGRG00000002414) ENSSGRG00000002413 cnpy2 (ENSSGRG00000002412) ENSSGRG00000002411 DGKA (ENSSGRG00000001869) ENSSGRG00000001805 tp53rk (ENSSGRG00000001801) slc2a10 (ENSSGRG00000001798) ENSSGRG00000001636 ENSSGRG00000001629 PIP4K2C (ENSSGRG00000001560) ##9 Clupeiformes ANCESTRAL SPECIES 940 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.a ##21 ENSGT00940000154457.a.a.a.a ##22 Atlantic herring MODERN SPECIES 21 ENSCHAG00000019914 uqcrc1 (ENSCHAG00000019228) TTLL3 (ENSCHAG00000019136) ENSCHAG00000019092 rae1 (ENSCHAG00000019013) ENSCHAG00000018998 gdf11 (ENSCHAG00000018985) sarnp (ENSCHAG00000018982) #19 cdk2 (ENSCHAG00000018905) pmela (ENSCHAG00000018890) ##20 MMP19 (ENSCHAG00000018842) ENSCHAG00000018821 timeless (ENSCHAG00000018595) prph (ENSCHAG00000018574) tuba1b (ENSCHAG00000018544) ##21 TUBA4B (ENSCHAG00000018538) ##22 suox (ENSCHAG00000018535) mcrs1 (ENSCHAG00000018468) ENSCHAG00000018455 ENSCHAG00000018431 ENSCHAG00000018424 ENSCHAG00000018414 tbc1d20 (ENSCHAG00000018345) rbck1 (ENSCHAG00000018283) maf1a (ENSCHAG00000018196) trib3 (ENSCHAG00000018185) sox12 (ENSCHAG00000018177) pnp4a (ENSCHAG00000018159) ENSCHAG00000018145 rem1 (ENSCHAG00000018123) rbm39a (ENSCHAG00000017579) Clupeocephala ANCESTRAL SPECIES ENSGT00940000154457.a.a.b ##22 Otomorpha ANCESTRAL SPECIES ENSGT00940000154457.a.a.b ##22 Otophysi ANCESTRAL SPECIES ENSGT00940000154457.a.a.b ##22 Cyprinoidei ANCESTRAL SPECIES ENSGT00940000154457.a.a.b ##22 Zebrafish MODERN SPECIES 2 rpn1 (ENSDARG00000059323) gata2a (ENSDARG00000059327) ENSDARG00000055053 itih3a.1 (ENSDARG00000055036) DNAJC16 (ENSDARG00000060725) cdab (ENSDARG00000038199) ENSDARG00000055014 ENSDARG00000055011 camk2n1 (ENSDARG00000101387) ENSDARG00000115782 ddx19b (ENSDARG00000005699) ENSDARG00000074565 acap3b (ENSDARG00000099240) mcrs1 (ENSDARG00000020840) suox (ENSDARG00000091574) tuba2 (ENSDARG00000045014) ##22 prph (ENSDARG00000028306) sarnp (ENSDARG00000059357) #19 cdk2 (ENSDARG00000026577) MMP19 (ENSDARG00000091557) pmela (ENSDARG00000091298) ##20 timeless (ENSDARG00000078497) cpne5b (ENSDARG00000070919) KIF21B (ENSDARG00000009733) LHFPL5 (ENSDARG00000045023) srpk1b (ENSDARG00000031560) mapk14b (ENSDARG00000028721) tmem167b (ENSDARG00000059400) ENSDARG00000059399 b3galt6 (ENSDARG00000038414) ENSDARG00000077095 Euteleosteomorpha ANCESTRAL SPECIES ENSGT00940000154457.a.a.b ##22 Protacanthopterygii ANCESTRAL SPECIES 6 ENSGT00950000182835.c.c.g.b #34 ENSGT00940000166720.d ENSGT00940000155094.b ENSGT00940000160207.b #33 ENSGT00950000183113.a.b #32 ENSGT00390000002707 #30 ENSGT00940000155407 #29 ENSGT00940000157965.d #28 ENSGT00940000161086 #27 ENSGT00530000063693.b #26 ENSGT00940000160178 #25 ENSGT00940000159411.b #24 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.b ##21 ENSGT00940000154457.a.a.a.b.a.a.b #23 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00940000154457.a.a.b ##22 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.a.a.a ##21 ENSGT00950000183188.A.a.b #20 ENSGT00390000002944.d #19 ENSGT00940000159544.i #17 ENSGT00940000159544.j ##17 ENSGT00940000155808 ENSGT00530000063607.a #16 ENSGT01050000244940.a.a.g.b #15 ENSGT01040000240451.a.b.a.b.b #14 ENSGT00940000155330.b ENSGT00940000158208.a.a #13 ENSGT00940000160351.e ENSGT00940000158956.c #12 ENSGT00940000160722 #11 ENSGT00940000154307.D #10 Salmoninae ANCESTRAL SPECIES 195 ENSGT00940000166720.d ENSGT00940000155094.b.b ENSGT00940000160207.b.e ##33 ENSGT00950000183113.a.b.f ##32 ENSGT00390000002707.s ##30 ENSGT00940000155407.j ##29 ENSGT00940000157965.d.c ##28 ENSGT00940000161086.e ##27 ENSGT00530000063693.b.i ##26 ENSGT00940000160178.e.b ##25 ENSGT00940000159411.b.`c.b ##24 ENSGT00940000154457.a.a.b ##22 ENSGT00950000183188.A.a.b.d ##20 ENSGT00390000002944.d.a ##19 ENSGT00940000159544.j ##17 ENSGT00940000155808 ENSGT00530000063607.a.m.b ##16 ENSGT01050000244940.a.a.g.b.b ##15 ENSGT01040000240451.a.b.a.b.b.a ##14 ENSGT00940000155330.b ENSGT00940000158208.a.a.f ##13 ENSGT00940000160351.e ENSGT00940000158956.c.g ##12 ENSGT00940000160722.f ##11 ENSGT00940000154307.D.i.a ##10 ENSGT00940000156890.a.b.h ##9 ENSGT00940000160528.b.c ##8 Salmoninae_a ANCESTRAL SPECIES ENSGT00940000154457.a.a.b ##22 Oncorhynchus ANCESTRAL SPECIES 7 ENSGT00940000156650.i.f ##37 ENSGT00950000182994.B.a.a.a.e ##36 ENSGT00940000162980.l ##35 ENSGT00950000182835.c.c.g.b.h ##34 ENSGT00940000166720.d ENSGT00940000155094.b.b ENSGT00940000160207.b.e ##33 ENSGT00950000183113.a.b.f ##32 ENSGT00390000002707.s ##30 ENSGT00940000155407.j ##29 ENSGT00940000157965.d.c ##28 ENSGT00940000161086.e ##27 ENSGT00530000063693.b.i ##26 ENSGT00940000160178.e.b ##25 ENSGT00940000159411.b.`c.b ##24 ENSGT00940000154457.a.a.b ##22 ENSGT00950000183188.A.a.b.d ##20 ENSGT00390000002944.d.a ##19 ENSGT00940000159544.j ##17 ENSGT00940000155808 ENSGT00530000063607.a.m.b ##16 ENSGT01050000244940.a.a.g.b.b ##15 ENSGT01040000240451.a.b.a.b.b.a ##14 ENSGT00940000155330.b ENSGT00940000158208.a.a.f ##13 ENSGT00940000160351.e ENSGT00940000158956.c.g ##12 ENSGT00940000160722.f ##11 ENSGT00940000154307.D.i.a ##10 ENSGT00940000156890.a.b.h ##9 ENSGT00940000160528.b.c ##8 Rainbow trout MODERN SPECIES 7 pfkfb1 (ENSOMYG00000005551) ##34 ENSOMYG00000005069 ENSOMYG00000005058 ccn5 (ENSOMYG00000063206) ##33 ada (ENSOMYG00000029961) ##32 pkig (ENSOMYG00000057036) ##30 ttpal (ENSOMYG00000029824) ##29 hnf4a (ENSOMYG00000029797) ##28 R3HDML (ENSOMYG00000029696) ##27 ENSOMYG00000053421 fitm2 (ENSOMYG00000029625) ##26 GDAP1L1 (ENSOMYG00000029604) ##25 jph2 (ENSOMYG00000029589) ##24 ENSOMYG00000029529 ##21 ENSOMYG00000016539 ENSOMYG00000029574 ##22 ENSOMYG00000029476 ##20 ENSOMYG00000029422 ##19 ENSOMYG00000029334 ##17 ENSOMYG00000029319 ##17 kansl2 (ENSOMYG00000029305) ENSOMYG00000029234 ##16 ENSOMYG00000029153 ##15 ctdsp2 (ENSOMYG00000029051) ##14 ENSOMYG00000028951 MARCHF9 (ENSOMYG00000075892) ##13 tspan31 (ENSOMYG00000028828) agap2 (ENSOMYG00000028725) ##12 ENSOMYG00000028608 ##11 gpr182 (ENSOMYG00000028600) ##10 ENSOMYG00000027613 ##9 Oncorhynchus_a ANCESTRAL SPECIES 9 ENSGT00940000156650.i.f ##37 ENSGT00950000182994.B.a.a.a.e ##36 ENSGT00940000162980.l ##35 ENSGT00950000182835.c.c.g.b.h ##34 ENSGT00940000166720.d ENSGT00940000155094.b.b ENSGT00940000160207.b.e ##33 ENSGT00950000183113.a.b.f ##32 ENSGT00390000002707.s ##30 ENSGT00940000155407.j ##29 ENSGT00940000157965.d.c ##28 ENSGT00940000161086.e ##27 ENSGT00530000063693.b.i ##26 ENSGT00940000160178.e.b ##25 ENSGT00940000159411.b.`c.b ##24 ENSGT00940000154457.a.a.b ##22 ENSGT00950000183188.A.a.b.d ##20 ENSGT00390000002944.d.a ##19 ENSGT00940000159544.j ##17 ENSGT00940000155808 ENSGT00530000063607.a.m.b ##16 ENSGT01050000244940.a.a.g.b.b ##15 ENSGT01040000240451.a.b.a.b.b.a ##14 ENSGT00940000155330.b ENSGT00940000158208.a.a.f ##13 ENSGT00940000160351.e ENSGT00940000158956.c.g ##12 ENSGT00940000160722.f ##11 ENSGT00940000154307.D.i.a ##10 ENSGT00940000156890.a.b.h ##9 ENSGT00940000160528.b.c ##8 Coho salmon MODERN SPECIES 16 ENSOKIG00005018763 ##35 pfkfb1 (ENSOKIG00005014506) ##34 ENSOKIG00005014338 ENSOKIG00005014328 ccn5 (ENSOKIG00005014325) ##33 ada (ENSOKIG00005014057) ##32 pkig (ENSOKIG00005014024) ##30 ttpal (ENSOKIG00005014006) ##29 hnf4a (ENSOKIG00005013923) ##28 R3HDML (ENSOKIG00005013912) ##27 fitm2 (ENSOKIG00005013908) ##26 ENSOKIG00005013899 ##25 jph2 (ENSOKIG00005013893) ##24 ENSOKIG00005013875 ##22 ENSOKIG00005013854 ##21 ENSOKIG00005013819 ##22 ENSOKIG00005013804 ##20 ENSOKIG00005013769 ##19 ccnt1 (ENSOKIG00005013752) ##17 ccnt1 (ENSOKIG00005013743) ##17 kansl2 (ENSOKIG00005013700) ENSOKIG00005013673 ##16 TMBIM6 (ENSOKIG00005013643) ##15 ctdsp2 (ENSOKIG00005013608) ##14 SLC11A2 (ENSOKIG00005012522) MARCHF9 (ENSOKIG00005012450) ##13 tspan31 (ENSOKIG00005012433) agap2 (ENSOKIG00005012353) ##12 ZBTB39 (ENSOKIG00005012335) ##11 gpr182 (ENSOKIG00005012327) ##10 ENSOKIG00005012272 ##9 Huchen MODERN SPECIES 243 pfkfb1 (ENSHHUG00000045619) #34 ENSHHUG00000046841 ccn5 (ENSHHUG00000046846) #33 ada (ENSHHUG00000046856) #32 pkig (ENSHHUG00000046897) #30 ttpal (ENSHHUG00000046900) #29 hnf4a (ENSHHUG00000046902) #28 R3HDML (ENSHHUG00000046968) #27 fitm2 (ENSHHUG00000046972) #26 GDAP1L1 (ENSHHUG00000046977) #25 ENSHHUG00000046987 jph2 (ENSHHUG00000046988) #24 ENSHHUG00000046990 ##21 TUBA4B (ENSHHUG00000047002) ##22 ENSHHUG00000047004 ENSHHUG00000047008 ##22 pmelb (ENSHHUG00000047120) #20 sarnp (ENSHHUG00000047137) #19 ccnt1 (ENSHHUG00000047155) #17 kansl2 (ENSHHUG00000047158) ENSHHUG00000047179 #16 TMBIM6 (ENSHHUG00000047190) #15 ctdsp2 (ENSHHUG00000047201) #14 MARCHF9 (ENSHHUG00000047211) #13 ENSHHUG00000047213 agap2 (ENSHHUG00000047216) #12 ENSHHUG00000047267 #11 gpr182 (ENSHHUG00000047269) #10 ENSHHUG00000047271 #9 igfbp6b (ENSHHUG00000047309) #8 Northern pike MODERN SPECIES 11 ITIH6 (ENSELUG00000006309) #35 pfkfb1 (ENSELUG00000006386) #34 ENSELUG00000028739 ccn5 (ENSELUG00000006428) #33 ENSELUG00000032073 ada (ENSELUG00000006483) #32 pkig (ENSELUG00000006496) #30 ttpal (ENSELUG00000006513) #29 hnf4a (ENSELUG00000006558) #28 R3HDML (ENSELUG00000006594) #27 fitm2 (ENSELUG00000006611) #26 GDAP1L1 (ENSELUG00000006637) #25 jph2 (ENSELUG00000006661) #24 ENSELUG00000013081 #23 ENSELUG00000006681 ##21 ENSELUG00000006694 ##22 pmelb (ENSELUG00000006726) #20 ENSELUG00000006786 #19 ccnt1 (ENSELUG00000006814) #17 ccnt1 (ENSELUG00000006830) #17 kansl2 (ENSELUG00000000222) ENSELUG00000006909 #16 TMBIM6 (ENSELUG00000006973) #15 SLC11A2 (ENSELUG00000007018) ENSELUG00000007038 #13 tspan31 (ENSELUG00000007060) agap2 (ENSELUG00000007107) #12 ZBTB39 (ENSELUG00000007121) #11 gpr182 (ENSELUG00000007136) #10 ENSELUG00000007155 #9 igfbp6b (ENSELUG00000007168) #8 Acanthomorphata ANCESTRAL SPECIES ENSGT00940000154457.a.a.b ##22 Euacanthomorphacea ANCESTRAL SPECIES ENSGT00940000154457.a.a.b ##22 Percomorphaceae ANCESTRAL SPECIES ENSGT00940000154457.a.a.b ##22 Percomorphaceae_B ANCESTRAL SPECIES ENSGT00940000154457.a.a.b ##22 Ovalentaria ANCESTRAL SPECIES ENSGT00940000154457.a.a.b ##22 Ovalentaria_B ANCESTRAL SPECIES ENSGT00940000154457.a.a.b ##22 Cichlidae ANCESTRAL SPECIES ENSGT00940000154457.a.a.b ##22 Pseudocrenilabrinae ANCESTRAL SPECIES ENSGT00940000154457.a.a.b ##22 Pseudocrenilabrinae_A ANCESTRAL SPECIES ENSGT00940000154457.a.a.b ##22 Haplochromini ANCESTRAL SPECIES ENSGT00940000154457.a.a.b ##22 Haplochromini_A ANCESTRAL SPECIES ENSGT00940000154457.a.a.b ##22 Haplochromini_B ANCESTRAL SPECIES ENSGT00940000154457.a.a.b ##22 Eastern happy MODERN SPECIES 12 SLC26A9 (ENSACLG00000022727) PAK6 (ENSACLG00000022687) ENSACLG00000022675 PLXNA2 (ENSACLG00000022581) ENSACLG00000022527 ENSACLG00000022488 ENSACLG00000022445 ptpn22 (ENSACLG00000022398) RSBN1 (ENSACLG00000022254) ENSACLG00000022207 ENSACLG00000022160 tmem269 (ENSACLG00000022135) ENSACLG00000022089 HSPG2 (ENSACLG00000020266) agmat (ENSACLG00000020177) ENSACLG00000019718 ##22 pink1 (ENSACLG00000019688) ENSACLG00000019676 ENSACLG00000019066 fam43b (ENSACLG00000019029) ENSACLG00000019022 mul1b (ENSACLG00000019015) ENSACLG00000018999 VWA5B1 (ENSACLG00000018969) ubxn10 (ENSACLG00000018960) ddx19a (ENSACLG00000018912) cptp (ENSACLG00000018875) ints11 (ENSACLG00000018782) ENSACLG00000018758 ENSACLG00000018732 ACAP3 (ENSACLG00000018556) P. nyererei MODERN SPECIES 401 tmem269 (ENSPNYG00000019932) HSPG2 (ENSPNYG00000019971) ENSPNYG00000020188 agmat (ENSPNYG00000020421) tuba2 (ENSPNYG00000020451) ##22 pink1 (ENSPNYG00000020461) ENSPNYG00000020469 ENSPNYG00000020577 fam43b (ENSPNYG00000021058) ENSPNYG00000021069 mul1b (ENSPNYG00000021079) VWA5B1 (ENSPNYG00000021106) ddx19a (ENSPNYG00000021160) ENSPNYG00000021190 ubxn10 (ENSPNYG00000021216) ints11 (ENSPNYG00000021238) cptp (ENSPNYG00000021273) ENSPNYG00000021281 ENSPNYG00000021292 ACAP3 (ENSPNYG00000021321) Atherinomorphae ANCESTRAL SPECIES ENSGT00940000154457.a.a.b ##22 Oryzias ANCESTRAL SPECIES ENSGT00940000154457.a.a.b ##22 Oryzias_a ANCESTRAL SPECIES ENSGT00940000154169.B ENSGT00940000156670 ENSGT00940000154417.c ENSGT00940000176954 ENSGT00940000165549 ENSGT00940000157644 ENSGT01100000263537.b.a.a.a.b ENSGT00940000158938 ENSGT00390000012141.b ENSGT00940000176941 ENSGT00940000162826 ENSGT01050000244971.B.b ENSGT01050000244971.A.d.a.b ENSGT00390000001206 ENSGT00950000183195.a ENSGT00940000154457.a.a.b ##22 ENSGT00940000156199.a.b ENSGT00940000155356.c ENSGT01010000222360.B ENSGT00940000158083.a ENSGT00940000157665.a ENSGT00940000158631 ENSGT00940000158981 ENSGT00940000153668.A ENSGT00510000046843.a.b ENSGT00950000183003.a.b ENSGT00940000165935 ENSGT00940000166581 ENSGT00940000165811 ENSGT00940000159728 ENSGT00950000182932.C.b Japanese Medaka HdrR MODERN SPECIES 21 ENSORLG00000022816 ENSORLG00000027246 ddx19a (ENSORLG00000015931) ENSORLG00000029225 cptp (ENSORLG00000015937) ints11 (ENSORLG00000015957) ENSORLG00000015962 VWA5B1 (ENSORLG00000015968) mul1b (ENSORLG00000023666) ENSORLG00000022013 fam43b (ENSORLG00000015977) ENSORLG00000028395 ENSORLG00000016000 pink1 (ENSORLG00000016007) agmat (ENSORLG00000016013) ENSORLG00000016016 ##22 ENSORLG00000016028 ENSORLG00000016039 sdf4 (ENSORLG00000016056) c1qtnf12 (ENSORLG00000016058) ENSORLG00000028075 olfml3a (ENSORLG00000016063) SYT6 (ENSORLG00000016069) ENSORLG00000029457 klhl21 (ENSORLG00000019357) ZBTB48 (ENSORLG00000019331) NOL9 (ENSORLG00000025184) PLEKHG5 (ENSORLG00000019281) ENSORLG00000027296 irx7 (ENSORLG00000030275) cd40 (ENSORLG00000026270) Chinese medaka DUPLICATION Chinese medaka MODERN SPECIES 103 tmem269 (ENSOSIG00000015972) ENSOSIG00000016041 ddx19a (ENSOSIG00000016045) ENSOSIG00000016046 cptp (ENSOSIG00000016047) ints11 (ENSOSIG00000016051) ENSOSIG00000016054 VWA5B1 (ENSOSIG00000016055) mul1b (ENSOSIG00000016056) ENSOSIG00000016057 fam43b (ENSOSIG00000016058) ENSOSIG00000016060 ENSOSIG00000016061 pink1 (ENSOSIG00000016064) agmat (ENSOSIG00000016066) TUBA4B (ENSOSIG00000016069) ##22 ACAP3 (ENSOSIG00000016143) HIPK1 (ENSOSIG00000020675) sdf4 (ENSOSIG00000020690) c1qtnf12 (ENSOSIG00000020691) SYT6 (ENSOSIG00000020692) klhl21 (ENSOSIG00000020693) ZBTB48 (ENSOSIG00000020694) NOL9 (ENSOSIG00000020695) PLEKHG5 (ENSOSIG00000020701) ENSOSIG00000020705 irx7 (ENSOSIG00000020707) cd40 (ENSOSIG00000020709) ENSOSIG00000020716 ENSOSIG00000020725 PFDN4 (ENSOSIG00000020727) Chinese medaka MODERN SPECIES 400 epor (ENSOSIG00000016865) rab3db (ENSOSIG00000016862) ELOF1 (ENSOSIG00000016858) CNN1 (ENSOSIG00000016854) tlcd4b (ENSOSIG00000016853) tmem205 (ENSOSIG00000016852) plppr2a (ENSOSIG00000016851) nfil3-6 (ENSOSIG00000016849) ENSOSIG00000016847 ENSOSIG00000016845 ENSOSIG00000016842 SLC44A2 (ENSOSIG00000016755) gcdhb (ENSOSIG00000016736) farsa (ENSOSIG00000016701) ilf3b (ENSOSIG00000016678) ENSOSIG00000016667 ##22 ptger1b (ENSOSIG00000016665) ENSOSIG00000016664 ENSOSIG00000016663 pglyrp6 (ENSOSIG00000016564) trappc5 (ENSOSIG00000016551) MCOLN1 (ENSOSIG00000016548) ENSOSIG00000016544 pkn1b (ENSOSIG00000014447) ENSOSIG00000014431 trir (ENSOSIG00000014430) ubn2b (ENSOSIG00000014428) rpsa (ENSOSIG00000014424) slc25a38a (ENSOSIG00000014419) MYH9 (ENSOSIG00000008234) txn2 (ENSOSIG00000008194) Cyprinodontiformes ANCESTRAL SPECIES ENSGT00940000154457.a.a.b ##22 Cyprinodontoidei ANCESTRAL SPECIES ENSGT00940000154457.a.a.b ##22 Poeciliinae ANCESTRAL SPECIES ENSGT00940000154457.a.a.b ##22 Platyfish MODERN SPECIES slc48a1a (ENSXMAG00000025011) PLXNA2 (ENSXMAG00000012159) ENSXMAG00000024169 ENSXMAG00000028240 ENSXMAG00000007199 ENSXMAG00000022749 ENSXMAG00000024774 ENSXMAG00000027751 ENSXMAG00000026345 RSBN1 (ENSXMAG00000012327) MAGI3 (ENSXMAG00000021151) tmem269 (ENSXMAG00000024776) HSPG2 (ENSXMAG00000012335) ENSXMAG00000028421 agmat (ENSXMAG00000012356) ENSXMAG00000027485 ##22 pink1 (ENSXMAG00000012373) ENSXMAG00000027225 ENSXMAG00000012410 fam43b (ENSXMAG00000019790) ENSXMAG00000022596 mul1b (ENSXMAG00000012421) VWA5B1 (ENSXMAG00000012428) ddx19a (ENSXMAG00000012440) ENSXMAG00000022729 ubxn10 (ENSXMAG00000027375) cptp (ENSXMAG00000012455) ints11 (ENSXMAG00000012456) ENSXMAG00000012471 ENSXMAG00000026940 ACAP3 (ENSXMAG00000012472) Aplocheiloidei ANCESTRAL SPECIES 41 ENSGT00940000158061.a ENSGT00940000159931 ENSGT00390000002307.e ENSGT00390000003023 ENSGT01050000244850.C.b.u.a ENSGT00390000008414.h ENSGT00940000154967.a.a.b.k.a ENSGT00940000163310.k.a ENSGT00990000203957 ENSGT00940000167346 ENSGT00390000001969.a ENSGT00940000156496.a.b ENSGT00940000154169.B ENSGT00940000156670 ENSGT00950000183195.a ENSGT00940000154457.a.a.b ##22 ENSGT00390000001206 ENSGT01050000244971.A.d.a.b ENSGT01050000244971.B.b ENSGT00940000162826 ENSGT00940000176941 ENSGT00390000012141.b ENSGT00940000158938 ENSGT00940000176954 ENSGT00940000154417.c ENSGT00390000012939 ENSGT00940000165549 ENSGT00940000157644 ENSGT01100000263537.b.a.a.a.b ENSGT00940000156199.a.b ENSGT00940000155356.c Mangrove rivulus MODERN SPECIES 283 ctdsp2 (ENSKMAG00000013173) #14 TMBIM6 (ENSKMAG00000013210) #15 ENSKMAG00000013253 #16 kansl2 (ENSKMAG00000013294) ccnt1 (ENSKMAG00000013385) #17 sarnp (ENSKMAG00000013400) #19 pmelb (ENSKMAG00000013415) #20 tuba1c (ENSKMAG00000013445) ##21 TUBA4B (ENSKMAG00000013459) ##22 jph2 (ENSKMAG00000013473) #24 GDAP1L1 (ENSKMAG00000013492) #25 fitm2 (ENSKMAG00000013523) #26 hnf4a (ENSKMAG00000013544) #28 ENSKMAG00000013568 ttpal (ENSKMAG00000013590) #29 pkig (ENSKMAG00000013607) #30 ada (ENSKMAG00000013626) #32 ccn5 (ENSKMAG00000013648) #33 ENSKMAG00000013664 ENSKMAG00000013676 Turquoise killifish DUPLICATION Turquoise killifish MODERN SPECIES 1624 RAPGEF3 (ENSNFUG00015010854) SLC48A1A (ENSNFUG00015010763) ENSNFUG00015010757 ENSNFUG00015010754 PLXNA2 (ENSNFUG00015007792) Nfu_g_1_001977 (ENSNFUG00015007582) CD55 (ENSNFUG00015007578) Nfu_g_1_001907 (ENSNFUG00015007558) ENSNFUG00015007538 ENSNFUG00015007527 RSBN1 (ENSNFUG00015007522) MAGI3 (ENSNFUG00015007511) tmem269 (ENSNFUG00015007493) ENSNFUG00015007490 AGMAT (ENSNFUG00015006872) ENSNFUG00015006860 ##22 PINK1 (ENSNFUG00015006854) ENSNFUG00015006847 ENSNFUG00015006842 fam43b (ENSNFUG00015006840) ENSNFUG00015006837 MUL1B (ENSNFUG00015006834) VWA5B1 (ENSNFUG00015006831) ENSNFUG00015006826 ddx19a (ENSNFUG00015006814) GLTPD1 (ENSNFUG00015006808) CPSF3L (ENSNFUG00015006339) ENSNFUG00015006294 TNPO1 (ENSNFUG00015006172) fcho2 (ENSNFUG00015005321) TMEM174 (ENSNFUG00015005119) Turquoise killifish MODERN SPECIES 1537 ENSNFUG00015013544 ##22 Percomorphaceae_C ANCESTRAL SPECIES 4 ENSGT00940000166720 ENSGT00940000155094.b ENSGT00940000160207.b #33 ENSGT00950000183113.a.b #32 ENSGT00390000002707 #30 ENSGT00940000155407 #29 ENSGT00940000157965.d #28 ENSGT00940000161086 #27 ENSGT00530000063693.b #26 ENSGT00940000160178 #25 ENSGT00940000159411.b #24 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.b ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.h.e.a ##21 ENSGT00950000183165.b.b.b.b ENSGT00940000154457.a.a.a.b.b ##22 ENSGT00940000154457.a.a.b ##22 ENSGT00950000183188.A.a.b #20 ENSGT00390000002944 #19 ENSGT00940000159544 #17 ENSGT00940000155808 ENSGT00530000063607.a #16 ENSGT01050000244940.a.a #15 ENSGT01040000240451.a.b.a #14 ENSGT00940000155330.b ENSGT00940000158208.a.a #13 ENSGT00940000160351 ENSGT00940000158956.c #12 ENSGT00940000160722 #11 ENSGT00940000154307.D #10 ENSGT00940000156890.a.b #9 ENSGT00940000160528.b #8 Eupercaria ANCESTRAL SPECIES ENSGT00940000154457.a.a.b ##22 Tetraodontidae ANCESTRAL SPECIES ENSGT00940000154457.a.a.b ##22 Fugu MODERN SPECIES 15 ACAP3 (ENSTRUG00000004785) ENSTRUG00000005476 ints11 (ENSTRUG00000005523) cptp (ENSTRUG00000005919) ENSTRUG00000025440 VWA5B1 (ENSTRUG00000006799) mul1b (ENSTRUG00000007255) ENSTRUG00000020982 fam43b (ENSTRUG00000020184) ENSTRUG00000007331 ENSTRUG00000007909 pink1 (ENSTRUG00000008101) agmat (ENSTRUG00000008312) HSPG2 (ENSTRUG00000008424) tmem269 (ENSTRUG00000026025) ENSTRUG00000003526 ##22 tuba1b (ENSTRUG00000000693) ##21 tuba1c (ENSTRUG00000025128) ##21 pmelb (ENSTRUG00000030062) #20 sarnp (ENSTRUG00000009497) #19 jph2 (ENSTRUG00000009664) #24 GDAP1L1 (ENSTRUG00000009791) #25 hnf4a (ENSTRUG00000029889) #28 ttpal (ENSTRUG00000010137) #29 ada (ENSTRUG00000027623) #32 fitm2 (ENSTRUG00000029484) #26 hnf4a (ENSTRUG00000028089) #28 ttpal (ENSTRUG00000032670) #29 pkig (ENSTRUG00000033016) #30 ccn5 (ENSTRUG00000010386) #33 ENSTRUG00000026740 Eupecaria_A ANCESTRAL SPECIES ENSGT00940000154457.a.a.b ##22 Ballan wrasse MODERN SPECIES 248 PLXNA2 (ENSLBEG00000017308) ENSLBEG00000017404 ENSLBEG00000017439 ENSLBEG00000017526 ENSLBEG00000017578 ptpn22 (ENSLBEG00000017611) ENSLBEG00000017652 ENSLBEG00000017692 ENSLBEG00000017732 tmem269 (ENSLBEG00000017761) HSPG2 (ENSLBEG00000017849) agmat (ENSLBEG00000018178) ENSLBEG00000018221 ##22 pink1 (ENSLBEG00000018244) ENSLBEG00000018275 ENSLBEG00000018522 ENSLBEG00000018960 fam43b (ENSLBEG00000018975) mul1b (ENSLBEG00000019007) mul1b (ENSLBEG00000019134) Eupecaria_B ANCESTRAL SPECIES 5 ENSGT00940000162980 #35 ENSGT00950000182835.c.c.g.b #34 ENSGT00940000166720 ENSGT00940000155094.b ENSGT00940000160207.b #33 ENSGT00950000183113.a.b #32 ENSGT00390000002707 #30 ENSGT00940000155407 #29 ENSGT00940000157965.d #28 ENSGT00940000161086 #27 ENSGT00530000063693.b #26 ENSGT00940000160178 #25 ENSGT00940000159411.b #24 ENSGT00950000183165.b.a.f ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.b ##21 ENSGT00940000154457.a.a.b ##22 ENSGT00950000183188.A.a.b #20 ENSGT00390000002944 #19 ENSGT00940000159544 #17 ENSGT00940000155808 ENSGT00530000063607.a #16 ENSGT01050000244940.a.a #15 ENSGT01040000240451.a.b.a #14 ENSGT00940000155330.b ENSGT00940000158208.a.a #13 ENSGT00940000160351 ENSGT00940000158956.c #12 ENSGT00940000160722 #11 ENSGT00940000154307.D #10 ENSGT00940000156890.a.b #9 ENSGT00940000160528.b #8 Perciformes ANCESTRAL SPECIES 4 ENSGT00940000159931 ENSGT00390000002307.e ENSGT01100000263544.c.a.b.b ENSGT00390000003023 ENSGT01050000244850.C.b.u.a ENSGT00390000008414.h ENSGT00940000154967.a.a.b ENSGT00990000203957 ENSGT00940000167346 ENSGT00990000204522 ENSGT00390000001969.a ENSGT00940000156496.a.b ENSGT00940000154169.B ENSGT00940000156670 ENSGT00950000183195.a ENSGT00940000154457.a.a.b ##22 ENSGT00390000001206 ENSGT01050000244971.A.d.a.b ENSGT01050000244971.B.b ENSGT00940000162826 ENSGT00940000176941 ENSGT00390000012141.b ENSGT00940000158938 ENSGT00940000154417.c ENSGT00940000176954 ENSGT00390000012939 ENSGT00940000165549 ENSGT00940000157644 ENSGT01100000263537.b.a.a.a.b ENSGT00950000183205.b.b ENSGT00940000156199.a.b Perciformes_a ANCESTRAL SPECIES 2 ENSGT00950000183072.b.a ENSGT00940000158061.a ENSGT00940000159931 ENSGT00390000002307.e ENSGT01100000263544.c.a.b.b ENSGT01050000244850.C.b.u.a ENSGT00390000008414.h ENSGT00940000163310.k.a ENSGT00990000203957 ENSGT00940000167346 ENSGT00390000001969.a ENSGT00940000156496.a.b ENSGT00940000154169.B ENSGT00940000156670 ENSGT00950000183195.a ENSGT00940000154457.a.a.b ##22 ENSGT00390000001206 ENSGT01050000244971.A.d.a.b ENSGT01050000244971.B.b ENSGT00940000162826 ENSGT00940000176941 ENSGT00390000012141.b ENSGT00940000154417.c ENSGT00940000176954 ENSGT00390000012939 ENSGT00940000165549 ENSGT00940000157644 ENSGT01100000263537.b.a.a.a.b ENSGT00940000156199.a.b ENSGT00940000155356.c ENSGT01010000222360.B Pike perch MODERN SPECIES 84 slc48a1a (ENSSLUG00000023464) SLC26A9 (ENSSLUG00000023470) PLXNA2 (ENSSLUG00000002137) ENSSLUG00000007164 ENSSLUG00000007169 ENSSLUG00000007187 ENSSLUG00000007206 ENSSLUG00000007224 ENSSLUG00000007232 ENSSLUG00000007237 RSBN1 (ENSSLUG00000007252) MAGI3 (ENSSLUG00000007276) tmem269 (ENSSLUG00000007298) HSPG2 (ENSSLUG00000007598) agmat (ENSSLUG00000011498) ENSSLUG00000011510 ##22 pink1 (ENSSLUG00000011518) ENSSLUG00000011524 ENSSLUG00000011535 fam43b (ENSSLUG00000011564) ENSSLUG00000011570 mul1b (ENSSLUG00000011576) ddx19a (ENSSLUG00000011605) ENSSLUG00000011905 ubxn10 (ENSSLUG00000011909) cptp (ENSSLUG00000011912) ints11 (ENSSLUG00000011957) ENSSLUG00000012019 ACAP3 (ENSSLUG00000012120) HIPK1 (ENSSLUG00000013815) sdf4 (ENSSLUG00000014148) Eupecaria_C ANCESTRAL SPECIES 5 ENSGT00940000166720 ENSGT00940000155094.b ENSGT00940000160207.b #33 ENSGT00950000183113.a.b #32 ENSGT00390000002707 #30 ENSGT00940000155407 #29 ENSGT00940000157965.d #28 ENSGT00940000161086 #27 ENSGT00530000063693.b #26 ENSGT00940000160178 #25 ENSGT00940000159411.b #24 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.a.b ##21 ENSGT00390000002944 #19 ENSGT00950000183188.A.a.b #20 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.b ##21 ENSGT00940000154457.a.a.b ##22 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.h.e.a ##21 ENSGT00950000183165.b.b.b.b ENSGT00940000154457.a.a.a.b.b ##22 Eupercaria_incertae_sedis ANCESTRAL SPECIES 15 ENSGT00940000166720 ENSGT00940000155094.b ENSGT00940000160207.b #33 ENSGT00950000183113.a.b #32 ENSGT00390000002707 #30 ENSGT00940000155407 #29 ENSGT00940000157965.d #28 ENSGT00940000161086 #27 ENSGT00530000063693.b #26 ENSGT00940000160178 #25 ENSGT00940000159411.b #24 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.a.b ##21 ENSGT00390000002944 #19 ENSGT00950000183188.A.a.b #20 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.b ##21 ENSGT00940000154457.a.a.b ##22 Large yellow croaker MODERN SPECIES 487 ENSLCRG00005021001 ENSLCRG00005021002 ENSLCRG00005021003 ccn5 (ENSLCRG00005021005) #33 ada (ENSLCRG00005021007) #32 pkig (ENSLCRG00005021024) #30 ttpal (ENSLCRG00005000764) #29 hnf4a (ENSLCRG00005000797) #28 GDAP1L1 (ENSLCRG00005001119) #25 fitm2 (ENSLCRG00005001123) #26 jph2 (ENSLCRG00005001125) #24 tuba1b (ENSLCRG00005001131) ##21 sarnp (ENSLCRG00005001134) #19 pmelb (ENSLCRG00005001137) #20 ENSLCRG00005001139 ##21 ENSLCRG00005001154 ##22 ENSLCRG00005001233 ##21 pink1 (ENSLCRG00005001235) ENSLCRG00005001236 ENSLCRG00005001239 ENSLCRG00005001242 fam43b (ENSLCRG00005001243) mul1b (ENSLCRG00005001246) VWA5B1 (ENSLCRG00005001248) ddx19a (ENSLCRG00005001251) ENSLCRG00005001257 ubxn10 (ENSLCRG00005001259) cptp (ENSLCRG00005001260) ints11 (ENSLCRG00005001265) ENSLCRG00005001286 ACAP3 (ENSLCRG00005001371) European seabass MODERN SPECIES 14 ENSDLAG00005031943 ENSDLAG00005011920 ENSDLAG00005011929 ENSDLAG00005011908 ENSDLAG00005033417 ENSDLAG00005011902 ccn5 (ENSDLAG00005029828) #33 ada (ENSDLAG00005011542) #32 pkig (ENSDLAG00005031596) #30 hnf4a (ENSDLAG00005011382) #28 R3HDML (ENSDLAG00005026691) #27 GDAP1L1 (ENSDLAG00005027572) #25 jph2 (ENSDLAG00005032600) #24 FITM2 (ENSDLAG00005027250) #26 ENSDLAG00005016315 ##21 ENSDLAG00005028924 ##22 ENSDLAG00005011344 #20 ENSDLAG00005011332 #19 ENSDLAG00005008781 MAPRE1 (ENSDLAG00005035139) dnmt3bb.2 (ENSDLAG00005007129) ENSDLAG00005007070 dnmt3bb.1 (ENSDLAG00005003831) commd7 (ENSDLAG00005003715) ENSDLAG00005003678 nol4lb (ENSDLAG00005027718) ENSDLAG00005031972 ENSDLAG00005003663 ptk6b (ENSDLAG00005003644) ppdpfb (ENSDLAG00005003633) tpd52l2b (ENSDLAG00005003563) Sarcopterygii ANCESTRAL SPECIES 1091 ENSGT00940000154457.a.b ##22 ENSGT00940000154457.a.a #22 Tetrapoda ANCESTRAL SPECIES 52 ENSGT00390000002944 #19 ENSGT00940000161052 ENSGT00390000013978.d ENSGT00940000156832 ENSGT00940000161168 ENSGT00390000002689 ENSGT00940000159891 ENSGT00940000161997.b ENSGT00390000005536 ENSGT00940000161742 ENSGT00390000001138.a ENSGT00390000012136 ENSGT00940000155969 ENSGT00940000160203 ENSGT00940000154457.a.b ##22 ENSGT00940000154457.a.a #22 ENSGT00950000182825.A.a.b.a.b.a.b ##21 ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00390000007809.a ENSGT00940000161132 ENSGT00940000161665 ENSGT01100000266433 ENSGT00950000183019.f.b.a ENSGT00940000160329 ENSGT00940000160653 ENSGT00950000183080.a.a ENSGT00940000159521 ENSGT00940000153804.B ENSGT00940000158666 ENSGT00940000155606.b Amniota ANCESTRAL SPECIES 410 ENSGT00950000182825.A.a.b.a.b.a.a.b #21 ENSGT00940000154457.a.a #22 Sauria ANCESTRAL SPECIES ENSGT00940000154457.a.a #22 Lepidosauria ANCESTRAL SPECIES ENSGT00940000154457.a.a #22 Episquamata ANCESTRAL SPECIES ENSGT00940000154457.a.a #22 Toxicofera ANCESTRAL SPECIES ENSGT00940000154457.a.a #22 Elapidae ANCESTRAL SPECIES ENSGT00940000154457.a.a #22 Elapidae_a ANCESTRAL SPECIES ENSGT00940000154457.a.a #22 Acanthophiinae ANCESTRAL SPECIES ENSGT00940000154457.a.a #22 Eastern brown snake MODERN SPECIES 1423 ENSPTXG00000017286 #22 Indian cobra MODERN SPECIES 6 ENSNNAG00000008196 ENSNNAG00000008210 MKLN1 (ENSNNAG00000008327) ENSNNAG00000009648 ENSNNAG00000009675 CHCHD3 (ENSNNAG00000009710) EXOC4 (ENSNNAG00000009854) ENSNNAG00000009939 SLC35B4 (ENSNNAG00000009967) FBH1 (ENSNNAG00000010034) ANKRD16 (ENSNNAG00000010359) ENSNNAG00000010372 ENSNNAG00000010393 ENSNNAG00000010458 NET1 (ENSNNAG00000010474) ENSNNAG00000010547 #22 COPG2 (ENSNNAG00000010588) MEST (ENSNNAG00000010812) CEP41 (ENSNNAG00000010922) CPA2 (ENSNNAG00000011289) TMEM209 (ENSNNAG00000011563) KLHDC10 (ENSNNAG00000011635) ENSNNAG00000011841 ENSNNAG00000011852 UBE2H (ENSNNAG00000011870) STRIP2 (ENSNNAG00000007642) AHCYL2 (ENSNNAG00000007765) SMO (ENSNNAG00000007908) ENSNNAG00000007987 ENSNNAG00000008012 ENSNNAG00000008061 Archelosauria ANCESTRAL SPECIES 26 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00940000154457.b ##22 ENSGT00950000182825.A.a.b.a.b.a.b ##21 ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00940000154457.a.a #22 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000159891 ENSGT00390000002689 ENSGT00940000161168 ENSGT00940000156832 ENSGT00940000156785 ENSGT00940000161052 ENSGT00390000002944 #19 Archosauria ANCESTRAL SPECIES 32 ENSGT00950000182837.b.a ENSGT00940000155606.b ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160329 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b ##21 ENSGT00950000182825.A.a.b.a.b.b ##21 ENSGT00940000154457.a.a #22 ENSGT00940000160203 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000159891 ENSGT00390000002689 ENSGT00940000161168 ENSGT00940000156832 ENSGT00940000156785 ENSGT00940000161052 ENSGT00390000002944 #19 ENSGT01050000245365 ENSGT00940000178340 Aves ANCESTRAL SPECIES 37 ENSGT00940000155687 ENSGT00950000182837.b.a ENSGT00940000155606.b ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160329 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b ##21 ENSGT00940000154457.a.a #22 ENSGT00940000160203 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000159891 ENSGT00390000002689 ENSGT00940000161168 ENSGT00940000156832 ENSGT00940000156785 ENSGT00940000161052 ENSGT00390000002944 #19 ENSGT01050000245365 ENSGT00940000178340 Neognathae ANCESTRAL SPECIES 31 ENSGT00940000155687 ENSGT00950000182837.b.a ENSGT00940000155606.b ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160329 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b ##21 ENSGT00940000154457.a.a #22 ENSGT00940000160203 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000159891 ENSGT00390000002689 ENSGT00940000161168 ENSGT00940000156832 ENSGT00940000156785 ENSGT00940000161052 ENSGT00390000002944 #19 ENSGT01050000245365 ENSGT00940000178340 Neognathae_b ANCESTRAL SPECIES 30 ENSGT00940000155606.b ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160329 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b ##21 ENSGT00940000154457.b.db.b ##22 ENSGT00950000182825.A.a.b.a.b.a.a.a.b ##21 ENSGT00940000154457.a.a #22 ENSGT00940000160203 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000159891 ENSGT00390000002689 ENSGT00940000161168 ENSGT00940000156832 ENSGT00940000156785 ENSGT00940000161052 ENSGT00390000002944 #19 ENSGT00950000183178.a ENSGT00940000155637 Neognathae_c ANCESTRAL SPECIES 34 ENSGT00940000159544 #17 ENSGT00940000155687 ENSGT00950000182837.b.a ENSGT00940000155606.b ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160329 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00940000154457.a.a #22 ENSGT00940000160203 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000159891 ENSGT00390000002689 ENSGT00940000161168 ENSGT00940000156832 ENSGT00940000156785 ENSGT00940000161052 ENSGT00390000002944 #19 ENSGT00950000183178.a ENSGT00940000155637 Kakapo MODERN SPECIES 15 CACNB3 (ENSSHBG00005012618) DDX23 (ENSSHBG00005012584) RND1 (ENSSHBG00005012569) CCDC65 (ENSSHBG00005001117) FKBP11 (ENSSHBG00005001116) ARF3 (ENSSHBG00005013165) WNT1 (ENSSHBG00005013129) ENSSHBG00005013112 PRKAG1 (ENSSHBG00005013091) ENSSHBG00005013072 ENSSHBG00005013050 RHEBL1 (ENSSHBG00005013025) DHH (ENSSHBG00005013010) LMBR1L (ENSSHBG00005012994) TUBA1B (ENSSHBG00005012958) ##21 ENSSHBG00005012920 #22 PRPH (ENSSHBG00005012882) C1QL4 (ENSSHBG00005012859) DNAJC22 (ENSSHBG00005012847) SPATS2 (ENSSHBG00005012834) MCRS1 (ENSSHBG00005012807) RDH5 (ENSSHBG00005012624) INPP1 (ENSSHBG00005012606) GDF11 (ENSSHBG00005012593) SARNP (ENSSHBG00005012577) #19 ORMDL2 (ENSSHBG00005012568) DNAJC14 (ENSSHBG00005012554) ENSSHBG00005012538 Cryptodira ANCESTRAL SPECIES ENSGT00940000154457.a.a #22 Testudinoidea ANCESTRAL SPECIES 21 ENSGT00940000155606.b ENSGT00940000158666 ENSGT00940000153804.B.g ENSGT00940000153804.B.h ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00940000154457.a.a #22 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000159891 ENSGT00390000002689 ENSGT00940000161168 ENSGT00940000156832 ENSGT00940000156785 ENSGT00940000161052 ENSGT00390000002944 #19 Emydidae ANCESTRAL SPECIES 49 ENSGT00950000182837.b.a.g ENSGT00940000155606.b ENSGT00940000158666 ENSGT00940000153804.B.h ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00940000154457.a.a #22 ENSGT00940000160203 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000159891 ENSGT00390000002689 ENSGT00940000161168 ENSGT00940000156785 ENSGT00940000161052 ENSGT00390000002944 #19 ENSGT00950000183178.a ENSGT00940000155637 ENSGT00390000016940.c.a painted turtle MODERN SPECIES 871 CACNB3 (ENSCPBG00000019984) DDX23 (ENSCPBG00000019988) RND1 (ENSCPBG00000019989) CCDC65 (ENSCPBG00000019991) FKBP11 (ENSCPBG00000019993) ARF3 (ENSCPBG00000019994) WNT10B (ENSCPBG00000019996) WNT1 (ENSCPBG00000020000) DDN (ENSCPBG00000020002) PRKAG1 (ENSCPBG00000020003) RHEBL1 (ENSCPBG00000020007) DHH (ENSCPBG00000020008) LMBR1L (ENSCPBG00000020010) ENSCPBG00000020015 ##21 ENSCPBG00000020016 ENSCPBG00000020017 #22 PRPH (ENSCPBG00000020019) ENSCPBG00000020020 C1QL4 (ENSCPBG00000020024) DNAJC22 (ENSCPBG00000020026) SPATS2 (ENSCPBG00000020032) KCNH3 (ENSCPBG00000020047) MCRS1 (ENSCPBG00000020099) ITGA7 (ENSCPBG00000020106) BLOC1S1 (ENSCPBG00000020120) RDH5 (ENSCPBG00000020123) ENSCPBG00000020129 ENSCPBG00000020133 Testudinidae ANCESTRAL SPECIES 25 ENSGT00390000002944 #19 ENSGT00940000161052 ENSGT00940000156785 ENSGT00940000156832 ENSGT00940000161168 ENSGT00390000002689 ENSGT00940000159891 ENSGT00390000005536 ENSGT00940000161742 ENSGT00390000001138.a ENSGT00390000012136 ENSGT00940000155969 ENSGT00390000012132 ENSGT00940000160203 ENSGT00940000154457.a.b ##22 ENSGT00940000154457.a.a #22 ENSGT00950000182825.A.a.b.a.b.b ##21 ENSGT00390000007809.a ENSGT00940000161132 ENSGT00940000161665 ENSGT00940000156707 ENSGT00950000183019.f.b.a ENSGT00390000016495 ENSGT00940000160329 ENSGT00940000160653 ENSGT00950000183080.a.a ENSGT00940000159521 ENSGT00940000153804.B.h ENSGT00940000153804.B.g ENSGT00940000158666 ENSGT00940000155606.b Goode s thornscrub tortoise MODERN SPECIES 17 ENSGEVG00005006869 ENSGEVG00005006890 GDF11 (ENSGEVG00005006922) ENSGEVG00005006951 CD63 (ENSGEVG00005006974) RDH5 (ENSGEVG00005007037) BLOC1S1 (ENSGEVG00005007167) ITGA7 (ENSGEVG00005007223) MCRS1 (ENSGEVG00005007469) KCNH3 (ENSGEVG00005007545) SPATS2 (ENSGEVG00005007708) DNAJC22 (ENSGEVG00005007795) C1QL4 (ENSGEVG00005007818) PRPH (ENSGEVG00005007842) ENSGEVG00005007895 ##22 ENSGEVG00005007919 #22 ENSGEVG00005007941 ##21 LMBR1L (ENSGEVG00005007977) DHH (ENSGEVG00005008078) RHEBL1 (ENSGEVG00005008190) ENSGEVG00005008350 PRKAG1 (ENSGEVG00005008401) ENSGEVG00005008432 WNT1 (ENSGEVG00005008476) WNT10B (ENSGEVG00005008535) ARF3 (ENSGEVG00005008644) FKBP11 (ENSGEVG00005008664) ENSGEVG00005008679 ENSGEVG00005008701 RND1 (ENSGEVG00005008717) DDX23 (ENSGEVG00005008745) Mammalia ANCESTRAL SPECIES 324 ENSGT00950000182825.A.a.b.a.b.a.a.b #21 ENSGT00940000154457.a.a #22 Theria ANCESTRAL SPECIES 55 ENSGT00940000160018 ENSGT00390000002259 ENSGT00390000002575 ENSGT00940000153654 ENSGT00950000183203.d.h ENSGT00940000159978 ENSGT00550000074798.a.a ENSGT00940000158664 ENSGT00950000182843.a.b ENSGT00820000127055.b ENSGT00940000164254 ENSGT00940000160448 ENSGT00940000158190 ENSGT00730000111394 ENSGT00950000182825.A.a.b.a.b.a.a.b #21 ENSGT00940000154457.a.a #22 ENSGT00940000154297.B ENSGT01020000230351.F ENSGT00940000154637 ENSGT00950000182825.B ##21 ENSGT00390000014845 ENSGT00390000006044 ENSGT00390000007249 ENSGT00730000111140 ENSGT00940000159598 ENSGT00950000183101.b ENSGT00390000017663 Marsupialia ANCESTRAL SPECIES ENSGT00940000154457.a.a #22 Marsupialia_b ANCESTRAL SPECIES ENSGT00940000154457.a.a #22 Diprotodontia ANCESTRAL SPECIES ENSGT00940000154457.a.a #22 Wallaby MODERN SPECIES 14312 ENSMEUG00000008063 #22 Eutheria ANCESTRAL SPECIES ENSGT00940000154457.a.a #22 Boreoeutheria ANCESTRAL SPECIES 14 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT01040000242059 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00910000146920 ENSGT00940000163812 ENSGT01080000257504 ENSGT00940000157018 ENSGT01070000253857 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b Laurasiatheria ANCESTRAL SPECIES 12 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000164110 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00940000163812 ENSGT00910000146920 ENSGT00940000157018 ENSGT01070000253857 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 Eulipotyphla ANCESTRAL SPECIES ENSGT00940000154457.a.a #22 Common shrew MODERN SPECIES 4345 TUBA4B (ENSSARG00000000861) #22 Laurasiatheria_a DUPLICATION Laurasiatheria_a DUPLICATION Laurasiatheria_a ANCESTRAL SPECIES ENSGT00940000154457.a.a.c.a #22 Artiodactyla ANCESTRAL SPECIES ENSGT00940000154457.a.a.c.a #22 Artiodactyla_a ANCESTRAL SPECIES ENSGT00940000154457.a.a.c.a #22 Artiodactyla_b ANCESTRAL SPECIES ENSGT00940000154457.a.a.c.a #22 Cetacea ANCESTRAL SPECIES 8 ENSGT00950000182837.b.a ENSGT00940000155606.b ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a.t ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.cc ##21 ENSGT00940000154457.a.a.c.a #22 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.bc.b ##21 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b Odontoceti ANCESTRAL SPECIES 7 ENSGT00950000182837.b.a ENSGT00940000155606.b ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a.t ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.cc ##21 ENSGT00940000154457.a.a.c.a #22 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.bc.b ##21 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00730000111429.b ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B Odontoceti_a ANCESTRAL SPECIES 6 ENSGT00950000182837.b.a ENSGT00940000155606.b ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a.t ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.cc ##21 ENSGT00940000154457.a.a.c.a #22 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.bc.b ##21 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00730000111429.b ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B Odontoceti_b ANCESTRAL SPECIES 7 ENSGT00940000155606.b ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a.t ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.cc ##21 ENSGT00900000143450 ENSGT00940000154457.a.a.c.a #22 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00730000111429.b ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b ENSGT00940000160612.d Monodontidae ANCESTRAL SPECIES 6 ENSGT00940000155606.b ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a.t ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.cc ##21 ENSGT00900000143450 ENSGT00940000154457.a.a.c.a #22 ENSGT01010000229521 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b ENSGT00940000160612.d Narwhal MODERN SPECIES 313 RND1 (ENSMMNG00015021382) CCDC65 (ENSMMNG00015021403) FKBP11 (ENSMMNG00015021421) ARF3 (ENSMMNG00015021435) WNT10B (ENSMMNG00015021457) WNT1 (ENSMMNG00015021481) DDN (ENSMMNG00015021490) PRKAG1 (ENSMMNG00015021509) KMT2D (ENSMMNG00015021547) RHEBL1 (ENSMMNG00015021596) DHH (ENSMMNG00015021606) LMBR1L (ENSMMNG00015021626) TUBA1B (ENSMMNG00015021671) ##21 ENSMMNG00015021709 ENSMMNG00015021713 ENSMMNG00015021728 #22 ENSMMNG00015021733 PRPH (ENSMMNG00015013461) TROAP (ENSMMNG00015013490) C1QL4 (ENSMMNG00015013515) SPATS2 (ENSMMNG00015013537) KCNH3 (ENSMMNG00015013644) MCRS1 (ENSMMNG00015013696) PRPF40B (ENSMMNG00015013762) FMNL3 (ENSMMNG00015013853) TMBIM6 (ENSMMNG00015013952) #15 NCKAP5L (ENSMMNG00015013977) #16 BCDIN3D (ENSMMNG00015013997) FAIM2 (ENSMMNG00015014009) AQP2 (ENSMMNG00015014027) AQP5 (ENSMMNG00015014040) Beluga whale MODERN SPECIES 39 RND1 (ENSDLEG00000005740) CCDC65 (ENSDLEG00000005725) FKBP11 (ENSDLEG00000005706) ARF3 (ENSDLEG00000005695) WNT10B (ENSDLEG00000005685) WNT1 (ENSDLEG00000005671) DDN (ENSDLEG00000005658) PRKAG1 (ENSDLEG00000005643) ENSDLEG00000005622 RHEBL1 (ENSDLEG00000005603) DHH (ENSDLEG00000005560) LMBR1L (ENSDLEG00000005547) ENSDLEG00000005539 ENSDLEG00000005535 ENSDLEG00000005525 ##21 ENSDLEG00000005507 #22 ENSDLEG00000005499 PRPH (ENSDLEG00000005489) TROAP (ENSDLEG00000005478) C1QL4 (ENSDLEG00000005472) SPATS2 (ENSDLEG00000016468) KCNH3 (ENSDLEG00000016437) MCRS1 (ENSDLEG00000016407) FAM186B (ENSDLEG00000016369) PRPF40B (ENSDLEG00000016312) FMNL3 (ENSDLEG00000016175) TMBIM6 (ENSDLEG00000016148) #15 NCKAP5L (ENSDLEG00000016120) #16 BCDIN3D (ENSDLEG00000016113) FAIM2 (ENSDLEG00000016092) AQP2 (ENSDLEG00000016070) Vaquita MODERN SPECIES 1 DDX23 (ENSPSNG00000012273) RND1 (ENSPSNG00000012213) CCDC65 (ENSPSNG00000012176) FKBP11 (ENSPSNG00000012091) ARF3 (ENSPSNG00000011993) WNT10B (ENSPSNG00000011881) DDN (ENSPSNG00000011626) ENSPSNG00000011515 KMT2D (ENSPSNG00000011440) RHEBL1 (ENSPSNG00000011379) DHH (ENSPSNG00000011320) LMBR1L (ENSPSNG00000011226) TUBA1B (ENSPSNG00000011161) ##21 KLHL8 (ENSPSNG00000011123) TUBA1A (ENSPSNG00000010994) ##21 ENSPSNG00000010933 #22 PRPH (ENSPSNG00000010814) TROAP (ENSPSNG00000010746) C1QL4 (ENSPSNG00000010701) ENSPSNG00000010655 SPATS2 (ENSPSNG00000010631) KCNH3 (ENSPSNG00000010468) MCRS1 (ENSPSNG00000010283) FAM186B (ENSPSNG00000010181) PRPF40B (ENSPSNG00000009876) FMNL3 (ENSPSNG00000009775) TMBIM6 (ENSPSNG00000009712) #15 ENSPSNG00000011171 NCKAP5L (ENSPSNG00000011101) #16 BCDIN3D (ENSPSNG00000011042) FAIM2 (ENSPSNG00000010923) Laurasiatheria_b ANCESTRAL SPECIES ENSGT00940000154457.a.a.c.a #22 Carnivora ANCESTRAL SPECIES ENSGT00940000154457.a.a.c.a #22 Caniformia ANCESTRAL SPECIES ENSGT00940000154457.a.a.c.a #22 Caniformia_b ANCESTRAL SPECIES ENSGT00940000154457.a.a.c.a #22 Mustelinae ANCESTRAL SPECIES ENSGT00940000154457.a.a.c.a #22 Ferret MODERN SPECIES 224 DDX60 (ENSMPUG00000007710) PALLD (ENSMPUG00000007693) CBR4 (ENSMPUG00000007659) ENSMPUG00000007642 SH3RF1 (ENSMPUG00000007630) NEK1 (ENSMPUG00000007612) CLCN3 (ENSMPUG00000007601) HPF1 (ENSMPUG00000007542) ENSMPUG00000007531 #22 MFAP3L (ENSMPUG00000007527) TRIM2 (ENSMPUG00000007517) FHDC1 (ENSMPUG00000007505) ARFIP1 (ENSMPUG00000007441) TIGD4 (ENSMPUG00000019997) TMEM154 (ENSMPUG00000007425) ENSMPUG00000007417 FBXW7 (ENSMPUG00000007404) GATB (ENSMPUG00000007394) FHIP1A (ENSMPUG00000007380) PRSS48 (ENSMPUG00000007310) ENSMPUG00000007291 SH3D19 (ENSMPUG00000007143) ENSMPUG00000019994 RPS3A (ENSMPUG00000007139) Laurasiatheria_a ANCESTRAL SPECIES 16 ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a.c.b #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00910000146920 ENSGT00940000163812 ENSGT00940000157018 ENSGT01070000253857 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 Artiodactyla ANCESTRAL SPECIES 13 ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a.c.b #22 ENSGT00950000182825.A.a.b.b ##21 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00940000163812 ENSGT00910000146920 ENSGT00940000157018 ENSGT01070000253857 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b Artiodactyla_a ANCESTRAL SPECIES 13 ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a.c.b #22 ENSGT00950000182825.A.a.b.b ##21 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00940000163812 ENSGT00910000146920 ENSGT00940000157018 ENSGT01070000253857 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b Artiodactyla_b ANCESTRAL SPECIES 12 ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a.c.b #22 ENSGT00950000182825.A.a.b.b ##21 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00940000163812 ENSGT00910000146920 ENSGT00940000157018 ENSGT01070000253857 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b Cetacea ANCESTRAL SPECIES 14 ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a.c.b #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00940000163812 ENSGT00910000146920 ENSGT00940000157018 ENSGT01070000253857 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 Odontoceti ANCESTRAL SPECIES 13 ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a.c.b #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00940000163812 ENSGT00910000146920 ENSGT00940000157018 ENSGT01070000253857 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 Odontoceti_a ANCESTRAL SPECIES 10 ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a.c.b #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00910000146920 ENSGT00940000163812 ENSGT00940000157018 ENSGT01070000253857 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 Odontoceti_b ANCESTRAL SPECIES 12 ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a.c.b #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00910000146920 ENSGT00940000163812 ENSGT01070000253857 ENSGT00940000157018 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 Monodontidae ANCESTRAL SPECIES 10 ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00990000213068 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a.c.b #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00910000146920 ENSGT00940000163812 ENSGT01070000253857 ENSGT00940000157018 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 Beluga whale MODERN SPECIES 84 FEV (ENSDLEG00000018865) CRYBA2 (ENSDLEG00000018870) CFAP65 (ENSDLEG00000018889) IHH (ENSDLEG00000018943) NHEJ1 (ENSDLEG00000018950) SLC23A3 (ENSDLEG00000018960) CNPPD1 (ENSDLEG00000018979) RETREG2 (ENSDLEG00000018990) ZFAND2B (ENSDLEG00000018999) ABCB6 (ENSDLEG00000019026) ATG9A (ENSDLEG00000019049) ENSDLEG00000019057 GLB1L (ENSDLEG00000019064) STK16 (ENSDLEG00000019079) TUBA4A (ENSDLEG00000019091) ENSDLEG00000019101 #22 DNAJB2 (ENSDLEG00000019116) PTPRN (ENSDLEG00000019144) ENSDLEG00000019179 DNPEP (ENSDLEG00000019188) DES (ENSDLEG00000019212) SPEG (ENSDLEG00000019259) ENSDLEG00000019431 GMPPA (ENSDLEG00000019436) ENSDLEG00000019449 ASIC4 (ENSDLEG00000019454) CHPF (ENSDLEG00000019490) TMEM198 (ENSDLEG00000019495) OBSL1 (ENSDLEG00000019527) INHA (ENSDLEG00000019767) STK11IP (ENSDLEG00000019774) Narwhal MODERN SPECIES 302 CRYBA2 (ENSMMNG00015005549) CFAP65 (ENSMMNG00015005484) IHH (ENSMMNG00015005455) NHEJ1 (ENSMMNG00015005440) SLC23A3 (ENSMMNG00015005390) CNPPD1 (ENSMMNG00015005357) RETREG2 (ENSMMNG00015005333) ZFAND2B (ENSMMNG00015005310) ABCB6 (ENSMMNG00015005232) ATG9A (ENSMMNG00015005188) ENSMMNG00015005174 ENSMMNG00015005169 GLB1L (ENSMMNG00015005156) STK16 (ENSMMNG00015005125) TUBA4A (ENSMMNG00015005098) ENSMMNG00015005074 #22 DNAJB2 (ENSMMNG00015005054) PTPRN (ENSMMNG00015005014) ENSMMNG00015005001 DNPEP (ENSMMNG00015004941) DES (ENSMMNG00015004930) SPEG (ENSMMNG00015004899) ENSMMNG00015004889 SPEGNB (ENSMMNG00015004883) ENSMMNG00015004876 GMPPA (ENSMMNG00015004864) ASIC4 (ENSMMNG00015004853) CHPF (ENSMMNG00015004846) TMEM198 (ENSMMNG00015004843) OBSL1 (ENSMMNG00015013744) INHA (ENSMMNG00015013722) Vaquita MODERN SPECIES 18 FEV (ENSPSNG00000011170) CRYBA2 (ENSPSNG00000011122) CFAP65 (ENSPSNG00000010593) IHH (ENSPSNG00000010524) NHEJ1 (ENSPSNG00000010446) SLC23A3 (ENSPSNG00000010037) CNPPD1 (ENSPSNG00000009927) RETREG2 (ENSPSNG00000009864) ZFAND2B (ENSPSNG00000009774) ABCB6 (ENSPSNG00000009668) ATG9A (ENSPSNG00000019260) ENSPSNG00000019067 GLB1L (ENSPSNG00000018947) STK16 (ENSPSNG00000018746) TUBA4A (ENSPSNG00000018656) ENSPSNG00000018557 #22 DNAJB2 (ENSPSNG00000018371) PTPRN (ENSPSNG00000018163) ENSPSNG00000018060 DNPEP (ENSPSNG00000017851) DES (ENSPSNG00000017779) SPEG (ENSPSNG00000017280) ENSPSNG00000017220 SPEGNB (ENSPSNG00000017168) ENSPSNG00000017117 GMPPA (ENSPSNG00000017045) ASIC4 (ENSPSNG00000016724) CHPF (ENSPSNG00000016627) TMEM198 (ENSPSNG00000016579) OBSL1 (ENSPSNG00000016426) INHA (ENSPSNG00000016336) Sperm whale MODERN SPECIES 11 FARSB (ENSPCTG00005008554) SGPP2 (ENSPCTG00005008511) PAX3 (ENSPCTG00005020959) ENSPCTG00005020914 EPHA4 (ENSPCTG00005020771) STK11IP (ENSPCTG00005020749) ENSPCTG00005020725 GMPPA (ENSPCTG00005020686) ENSPCTG00005020674 SPEGNB (ENSPCTG00005020639) SPEG (ENSPCTG00005020396) RETREG2 (ENSPCTG00005020360) CNPPD1 (ENSPCTG00005020329) SLC23A3 (ENSPCTG00005020177) TUBA4A (ENSPCTG00005020138) ENSPCTG00005020056 #22 DNAJB2 (ENSPCTG00005019868) PTPRN (ENSPCTG00005019662) ENSPCTG00005019597 ENSPCTG00005019578 IHH (ENSPCTG00005019553) CFAP65 (ENSPCTG00005019150) CRYBA2 (ENSPCTG00005019097) FEV (ENSPCTG00005019061) CDK5R2 (ENSPCTG00005019049) WNT10A (ENSPCTG00005019019) WNT6 (ENSPCTG00005018979) ENSPCTG00005018949 TTLL4 (ENSPCTG00005018815) STK36 (ENSPCTG00005018735) RNF25 (ENSPCTG00005018698) Suina ANCESTRAL SPECIES 3 ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a.c.b #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00910000146920 ENSGT00940000163812 ENSGT01070000253857 ENSGT00940000157018 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 Pig MODERN SPECIES 6 FEV (ENSSSCG00000035988) CRYBA2 (ENSSSCG00000040776) CFAP65 (ENSSSCG00000016203) IHH (ENSSSCG00000016204) NHEJ1 (ENSSSCG00000016205) SLC23A3 (ENSSSCG00000029694) CNPPD1 (ENSSSCG00000016206) RETREG2 (ENSSSCG00000016207) ZFAND2B (ENSSSCG00000016208) ABCB6 (ENSSSCG00000016210) ATG9A (ENSSSCG00000016211) ANKZF1 (ENSSSCG00000016212) GLB1L (ENSSSCG00000016213) STK16 (ENSSSCG00000016214) TUBA4A (ENSSSCG00000016216) ENSSSCG00000016215 #22 DNAJB2 (ENSSSCG00000016217) PTPRN (ENSSSCG00000016218) ENSSSCG00000016219 DNPEP (ENSSSCG00000016220) DES (ENSSSCG00000020785) ENSSSCG00000032522 SPEGNB (ENSSSCG00000032289) ENSSSCG00000063534 GMPPA (ENSSSCG00000023935) ENSSSCG00000031491 ASIC4 (ENSSSCG00000029968) CHPF (ENSSSCG00000021610) TMEM198 (ENSSSCG00000027541) OBSL1 (ENSSSCG00000028052) INHA (ENSSSCG00000020771) Laurasiatheria_b ANCESTRAL SPECIES 16 ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a.c.b #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00910000146920 ENSGT00940000163812 ENSGT00940000157018 ENSGT01070000253857 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 Carnivora ANCESTRAL SPECIES 17 ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a.c.b #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00910000146920 ENSGT00940000163812 ENSGT00940000157018 ENSGT01070000253857 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 Caniformia ANCESTRAL SPECIES 14 ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a.c.b #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00910000146920 ENSGT00940000163812 ENSGT00940000157018 ENSGT01070000253857 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 Caniformia_b ANCESTRAL SPECIES 13 ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a.c.b #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00940000163812 ENSGT00910000146920 ENSGT00940000157018 ENSGT01070000253857 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 Ursidae ANCESTRAL SPECIES 7 ENSGT00940000161562 ENSGT00940000160306.b ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a.c.b #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT01070000253857 ENSGT00910000146920 ENSGT00940000163812 ENSGT00940000157018 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 Ursus ANCESTRAL SPECIES 12 ENSGT00940000161562 ENSGT00940000160306.b ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a.c.b #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00910000146920 ENSGT01070000253857 ENSGT00940000163812 ENSGT00940000157018 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 American black bear MODERN SPECIES 4098 NHEJ1 (ENSUAMG00000006916) SLC23A3 (ENSUAMG00000006917) CNPPD1 (ENSUAMG00000006919) RETREG2 (ENSUAMG00000006922) ZFAND2B (ENSUAMG00000006924) ABCB6 (ENSUAMG00000006930) ATG9A (ENSUAMG00000007415) ANKZF1 (ENSUAMG00000007442) GLB1L (ENSUAMG00000007611) STK16 (ENSUAMG00000009024) TUBA4A (ENSUAMG00000009026) ENSUAMG00000009028 #22 DNAJB2 (ENSUAMG00000009086) PTPRN (ENSUAMG00000009095) ENSUAMG00000009100 Polar bear MODERN SPECIES 169 ENSUMAG00000019064 CRYBA2 (ENSUMAG00000019060) CFAP65 (ENSUMAG00000019016) ENSUMAG00000019009 NHEJ1 (ENSUMAG00000019002) SLC23A3 (ENSUMAG00000018986) CNPPD1 (ENSUMAG00000018974) RETREG2 (ENSUMAG00000018947) ZFAND2B (ENSUMAG00000018934) ABCB6 (ENSUMAG00000018819) ATG9A (ENSUMAG00000018800) ANKZF1 (ENSUMAG00000018788) GLB1L (ENSUMAG00000018776) STK16 (ENSUMAG00000018767) TUBA4A (ENSUMAG00000018763) ENSUMAG00000018744 #22 DNAJB2 (ENSUMAG00000018736) PTPRN (ENSUMAG00000018692) RESP18 (ENSUMAG00000018683) DNPEP (ENSUMAG00000018583) DES (ENSUMAG00000018525) ENSUMAG00000018511 ENSUMAG00000018493 SPEGNB (ENSUMAG00000018490) ENSUMAG00000018486 GMPPA (ENSUMAG00000018291) ASIC4 (ENSUMAG00000018256) TMEM198 (ENSUMAG00000018249) OBSL1 (ENSUMAG00000018229) INHA (ENSUMAG00000018222) STK11IP (ENSUMAG00000018159) Giant Panda MODERN SPECIES 11 WNT10A (ENSAMEG00000002646) FEV (ENSAMEG00000002639) CRYBA2 (ENSAMEG00000002615) CFAP65 (ENSAMEG00000002575) IHH (ENSAMEG00000027416) NHEJ1 (ENSAMEG00000002562) SLC23A3 (ENSAMEG00000002538) ENSAMEG00000002494 ABCB6 (ENSAMEG00000002427) ZFAND2B (ENSAMEG00000002464) ATG9A (ENSAMEG00000002386) ANKZF1 (ENSAMEG00000002362) GLB1L (ENSAMEG00000002329) STK16 (ENSAMEG00000002308) TUBA4A (ENSAMEG00000028540) ENSAMEG00000027535 #22 DNAJB2 (ENSAMEG00000016755) PTPRN (ENSAMEG00000016757) DNPEP (ENSAMEG00000016794) DES (ENSAMEG00000016801) SPEG (ENSAMEG00000016742) SPEGNB (ENSAMEG00000031347) GMPPA (ENSAMEG00000016830) ENSAMEG00000029204 CHPF (ENSAMEG00000016862) TMEM198 (ENSAMEG00000016867) ENSAMEG00000016871 INHA (ENSAMEG00000016879) STK11IP (ENSAMEG00000016882) ENSAMEG00000019242 SLC4A3 (ENSAMEG00000016909) Canidae ANCESTRAL SPECIES ENSGT00940000154457.a.a.c.b #22 Red fox MODERN SPECIES 39 CRYBA2 (ENSVVUG00000000927) CFAP65 (ENSVVUG00000000403) IHH (ENSVVUG00000000214) ENSVVUG00000000136 NHEJ1 (ENSVVUG00000025797) SLC23A3 (ENSVVUG00000025794) CNPPD1 (ENSVVUG00000025793) RETREG2 (ENSVVUG00000025791) ZFAND2B (ENSVVUG00000025788) ABCB6 (ENSVVUG00000025784) ATG9A (ENSVVUG00000025782) ANKZF1 (ENSVVUG00000025776) GLB1L (ENSVVUG00000025774) STK16 (ENSVVUG00000025772) TUBA4A (ENSVVUG00000025771) ENSVVUG00000025770 #22 DNAJB2 (ENSVVUG00000025769) PTPRN (ENSVVUG00000025767) ENSVVUG00000025766 DNPEP (ENSVVUG00000025750) DES (ENSVVUG00000025746) ENSVVUG00000025742 ENSVVUG00000025739 SPEGNB (ENSVVUG00000025738) ENSVVUG00000025736 GMPPA (ENSVVUG00000025732) ASIC4 (ENSVVUG00000025729) CHPF (ENSVVUG00000025727) TMEM198 (ENSVVUG00000025722) ENSVVUG00000025718 INHA (ENSVVUG00000025711) Laurasiatheria_c ANCESTRAL SPECIES 18 ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a.c.b #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00910000146920 ENSGT00940000163812 ENSGT01070000253857 ENSGT00940000157018 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 Equus ANCESTRAL SPECIES 51 ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a.c.b #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00910000146920 ENSGT00940000157018 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 ENSGT00940000158471 ENSGT00940000159765 Horse MODERN SPECIES 27 CDK5R2 (ENSECAG00000006781) FEV (ENSECAG00000016026) CRYBA2 (ENSECAG00000015100) CFAP65 (ENSECAG00000019457) IHH (ENSECAG00000003802) NHEJ1 (ENSECAG00000030989) CNPPD1 (ENSECAG00000010050) RETREG2 (ENSECAG00000013944) ZFAND2B (ENSECAG00000014958) ABCB6 (ENSECAG00000016378) ATG9A (ENSECAG00000007801) ANKZF1 (ENSECAG00000016473) GLB1L (ENSECAG00000003253) STK16 (ENSECAG00000014093) TUBA4A (ENSECAG00000033788) ENSECAG00000030595 #22 DNAJB2 (ENSECAG00000022076) PTPRN (ENSECAG00000005468) ENSECAG00000047913 DNPEP (ENSECAG00000021601) DES (ENSECAG00000013832) SPEG (ENSECAG00000000174) ENSECAG00000031276 GMPPA (ENSECAG00000011565) ASIC4 (ENSECAG00000019427) TMEM198 (ENSECAG00000008352) CHPF (ENSECAG00000000516) OBSL1 (ENSECAG00000009352) INHA (ENSECAG00000015864) STK11IP (ENSECAG00000017116) SLC4A3 (ENSECAG00000010982) Chiroptera ANCESTRAL SPECIES 11 ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a.c.b #22 ENSGT00940000154457.b ##22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00910000146920 ENSGT00940000163812 ENSGT01070000253857 ENSGT00940000157018 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b Microchiroptera ANCESTRAL SPECIES 15 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00990000213248 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a.c.b #22 ENSGT00940000154457.b ##22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00910000146920 ENSGT00940000163812 ENSGT01070000253857 ENSGT00940000157018 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b Microbat DUPLICATION Microbat MODERN SPECIES 940 CRYBA2 (ENSMLUG00000011404) CFAP65 (ENSMLUG00000011424) IHH (ENSMLUG00000011503) ENSMLUG00000026660 NHEJ1 (ENSMLUG00000024087) SLC23A3 (ENSMLUG00000011517) CNPPD1 (ENSMLUG00000023687) RETREG2 (ENSMLUG00000022407) ZFAND2B (ENSMLUG00000007983) ABCB6 (ENSMLUG00000029153) ENSMLUG00000008013 ANKZF1 (ENSMLUG00000008036) GLB1L (ENSMLUG00000023103) STK16 (ENSMLUG00000008066) TUBA4A (ENSMLUG00000008082) ENSMLUG00000015526 #22 CHPF (ENSMLUG00000010340) DNAJB2 (ENSMLUG00000008099) PTPRN (ENSMLUG00000008123) DNPEP (ENSMLUG00000010171) DES (ENSMLUG00000010209) SPEG (ENSMLUG00000010235) GMPPA (ENSMLUG00000027974) ASIC4 (ENSMLUG00000010308) TMEM198 (ENSMLUG00000028778) ENSMLUG00000010348 SLC4A3 (ENSMLUG00000010450) EPHA4 (ENSMLUG00000015777) PAX3 (ENSMLUG00000014155) SGPP2 (ENSMLUG00000010880) FARSB (ENSMLUG00000010904) Microbat MODERN SPECIES 1843 PRRC2C (ENSMLUG00000016744) ENSMLUG00000028994 #22 ENSMLUG00000024501 Laurasiatheria_a ANCESTRAL SPECIES 171 ENSGT00950000182825.A.a.b.a.b.a.a.b #21 ENSGT00940000154457.a.a.d #22 Laurasiatheria_b ANCESTRAL SPECIES ENSGT00940000154457.a.a.d #22 Carnivora ANCESTRAL SPECIES ENSGT00940000154457.a.a.d #22 Felidae ANCESTRAL SPECIES 15 ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a.d #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00940000163812 ENSGT00910000146920 ENSGT01070000253857 ENSGT00940000157018 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 Panthera ANCESTRAL SPECIES 9 ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a.d #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00940000163812 ENSGT00910000146920 ENSGT01070000253857 ENSGT00940000157018 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 Tiger MODERN SPECIES 240 ENSPTIG00000005440 CRYBA2 (ENSPTIG00000007397) CFAP65 (ENSPTIG00000008075) ENSPTIG00000013562 NHEJ1 (ENSPTIG00000014677) SLC23A3 (ENSPTIG00000015352) CNPPD1 (ENSPTIG00000015930) RETREG2 (ENSPTIG00000016225) ZFAND2B (ENSPTIG00000017139) ABCB6 (ENSPTIG00000019628) ATG9A (ENSPTIG00000019791) ANKZF1 (ENSPTIG00000020141) GLB1L (ENSPTIG00000020431) STK16 (ENSPTIG00000021342) TUBA4A (ENSPTIG00000021758) TUBA4B (ENSPTIG00000002566) #22 DNAJB2 (ENSPTIG00000002946) PTPRN (ENSPTIG00000005870) ENSPTIG00000008992 DNPEP (ENSPTIG00000009304) DES (ENSPTIG00000009804) ENSPTIG00000010202 SPEGNB (ENSPTIG00000010733) ENSPTIG00000005626 GMPPA (ENSPTIG00000011484) ENSPTIG00000013431 ASIC4 (ENSPTIG00000013757) ENSPTIG00000014241 TMEM198 (ENSPTIG00000014338) OBSL1 (ENSPTIG00000015087) INHA (ENSPTIG00000016050) Panthera_a ANCESTRAL SPECIES 6 ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a.d #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00910000146920 ENSGT00940000163812 ENSGT01070000253857 ENSGT00940000157018 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 leopard MODERN SPECIES 12 FEV (ENSPPRG00000009437) CRYBA2 (ENSPPRG00000009580) CFAP65 (ENSPPRG00000012363) IHH (ENSPPRG00000012622) NHEJ1 (ENSPPRG00000012808) SLC23A3 (ENSPPRG00000013147) CNPPD1 (ENSPPRG00000013483) RETREG2 (ENSPPRG00000013844) ZFAND2B (ENSPPRG00000015562) ABCB6 (ENSPPRG00000016666) ATG9A (ENSPPRG00000018424) ANKZF1 (ENSPPRG00000018883) GLB1L (ENSPPRG00000020047) STK16 (ENSPPRG00000025038) TUBA4A (ENSPPRG00000025015) TUBA4B (ENSPPRG00000025008) #22 DNAJB2 (ENSPPRG00000024983) PTPRN (ENSPPRG00000024874) ENSPPRG00000024830 DNPEP (ENSPPRG00000024638) DES (ENSPPRG00000024580) SPEG (ENSPPRG00000024053) ENSPPRG00000014520 SPEGNB (ENSPPRG00000023685) ENSPPRG00000023503 GMPPA (ENSPPRG00000000543) ASIC4 (ENSPPRG00000002174) CHPF (ENSPPRG00000002929) TMEM198 (ENSPPRG00000003052) OBSL1 (ENSPPRG00000004325) INHA (ENSPPRG00000004559) Cat MODERN SPECIES 239 CDK5R2 (ENSFCAG00000043220) FEV (ENSFCAG00000045613) CRYBA2 (ENSFCAG00000007487) CFAP65 (ENSFCAG00000007488) IHH (ENSFCAG00000029276) NHEJ1 (ENSFCAG00000035699) SLC23A3 (ENSFCAG00000007491) RETREG2 (ENSFCAG00000011233) ZFAND2B (ENSFCAG00000011237) ABCB6 (ENSFCAG00000011240) ATG9A (ENSFCAG00000011243) ANKZF1 (ENSFCAG00000011246) GLB1L (ENSFCAG00000011248) STK16 (ENSFCAG00000030820) TUBA4A (ENSFCAG00000038881) TUBA4B (ENSFCAG00000042631) #22 DNAJB2 (ENSFCAG00000011252) PTPRN (ENSFCAG00000011253) DNPEP (ENSFCAG00000011255) DES (ENSFCAG00000011256) SPEG (ENSFCAG00000036538) SPEGNB (ENSFCAG00000039963) ENSFCAG00000037442 GMPPA (ENSFCAG00000022252) ENSFCAG00000039778 ASIC4 (ENSFCAG00000006664) CHPF (ENSFCAG00000039550) TMEM198 (ENSFCAG00000006665) OBSL1 (ENSFCAG00000006666) INHA (ENSFCAG00000006667) STK11IP (ENSFCAG00000006668) Artiodactyla ANCESTRAL SPECIES 185 ENSGT00950000182825.A.a.b.a.b.a.a.b #21 ENSGT00940000154457.a.a.d #22 Suina ANCESTRAL SPECIES ENSGT00940000154457.a.a.d #22 Chacoan peccary MODERN SPECIES 99 SIM2 (ENSCWAG00000008373) CLDN14 (ENSCWAG00000008352) CHAF1B (ENSCWAG00000008229) MORC3 (ENSCWAG00000008171) DOP1B (ENSCWAG00000007799) CBR3 (ENSCWAG00000003335) ENSCWAG00000003327 ENSCWAG00000003319 SETD4 (ENSCWAG00000003308) ENSCWAG00000003295 RUNX1 (ENSCWAG00000003243) CLIC6 (ENSCWAG00000003138) RCAN1 (ENSCWAG00000003081) KCNE1 (ENSCWAG00000003072) SMIM34 (ENSCWAG00000003064) ENSCWAG00000003061 #22 C21orf140 (ENSCWAG00000003054) SMIM11 (ENSCWAG00000003045) KCNE2 (ENSCWAG00000003038) MRPS6 (ENSCWAG00000003022) ATP5PO (ENSCWAG00000002999) ITSN1 (ENSCWAG00000002936) CRYZL1 (ENSCWAG00000002883) DONSON (ENSCWAG00000002852) ENSCWAG00000002805 GART (ENSCWAG00000002777) DNAJC28 (ENSCWAG00000002771) ENSCWAG00000002767 TMEM50B (ENSCWAG00000002753) IFNGR2 (ENSCWAG00000002734) IFNAR1 (ENSCWAG00000002719) Artiodactyla_a ANCESTRAL SPECIES 17 ENSGT00940000160018 ENSGT00390000002259 ENSGT00390000002575 ENSGT00940000153654 ENSGT00950000183203.d.h ENSGT00940000159978 ENSGT00390000009363 ENSGT00550000074798.a.a ENSGT00940000158664 ENSGT00950000182843.a.b ENSGT00820000127055.b ENSGT00940000160448 ENSGT00940000158190 ENSGT00730000111394.n.b ENSGT00950000182825.A.a.b.a.b.a.a.b #21 ENSGT00940000154457.a.a.d #22 ENSGT00730000111394.m ENSGT00940000154297.B ENSGT01020000230351.F ENSGT00940000154637 ENSGT00950000182825.B ##21 ENSGT00390000014845 ENSGT00390000006044 ENSGT00390000007249 ENSGT00730000111140 ENSGT00940000159598 ENSGT00950000183101.b ENSGT00940000163677.a.b.a.a.a.a ENSGT00940000162000.d ENSGT00940000162972 ENSGT00390000017655 Camelidae ANCESTRAL SPECIES 27 ENSGT01050000244890.a.b.b ENSGT00940000153993.B ENSGT00530000063607.a #16 ENSGT01050000244940.a.a #15 ENSGT00940000159962 ENSGT00930000150980.b ENSGT00940000162031 ENSGT00390000005536 ENSGT00940000161742 ENSGT00390000001138.a ENSGT00390000012136 ENSGT00940000155969 ENSGT00390000012132 ENSGT00940000160203 ENSGT00950000182825.A.a.b.a.b.a.a.b #21 ENSGT00940000154457.a.a.d #22 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b.b ##21 ENSGT00390000007809.a ENSGT00940000161132 ENSGT00940000161665 ENSGT00940000156707 ENSGT00950000183019.f.b.a.t ENSGT00390000016495 ENSGT00940000160329 ENSGT00940000160653 ENSGT00950000183080.a.a ENSGT00940000159521 ENSGT00940000153804.B ENSGT00940000158666 ENSGT00940000155606.b Alpaca MODERN SPECIES 2737 ENSVPAG00000006087 ANKZF1 (ENSVPAG00000006089) GLB1L (ENSVPAG00000006090) STK16 (ENSVPAG00000006091) ENSVPAG00000006094 #21 TUBA4B (ENSVPAG00000006096) #22 ENSVPAG00000006097 ENSVPAG00000006099 ENSVPAG00000006100 DNPEP (ENSVPAG00000006102) ENSVPAG00000006103 Artiodactyla_b ANCESTRAL SPECIES ENSGT00940000154457.a.a.d #22 Cetacea ANCESTRAL SPECIES ENSGT00940000154457.a.a.d #22 Odontoceti ANCESTRAL SPECIES ENSGT00940000154457.a.a.d #22 Odontoceti_a ANCESTRAL SPECIES ENSGT00940000154457.a.a.d #22 Odontoceti_b ANCESTRAL SPECIES ENSGT00940000154457.a.a.d #22 Monodontidae ANCESTRAL SPECIES ENSGT00940000154457.a.a.d #22 Narwhal MODERN SPECIES 299 ENSMMNG00015011920 ENSMMNG00015011901 GSG1L (ENSMMNG00015011861) KATNIP (ENSMMNG00015011757) GTF3C1 (ENSMMNG00015011604) IL21R (ENSMMNG00015011559) IL4R (ENSMMNG00015011525) NSMCE1 (ENSMMNG00015011498) KDM8 (ENSMMNG00015011485) HS3ST4 (ENSMMNG00015011467) ENSMMNG00015011458 ZKSCAN2 (ENSMMNG00015011430) AQP8 (ENSMMNG00015011418) LCMT1 (ENSMMNG00015011334) ENSMMNG00015011313 ENSMMNG00015011305 #22 ARHGAP17 (ENSMMNG00015011130) SLC5A11 (ENSMMNG00015010968) TNRC6A (ENSMMNG00015010837) RBBP6 (ENSMMNG00015010660) CACNG3 (ENSMMNG00015010605) PRKCB (ENSMMNG00015010562) CHP2 (ENSMMNG00015010523) ERN2 (ENSMMNG00015010432) PLK1 (ENSMMNG00015010378) DCTN5 (ENSMMNG00015010352) PALB2 (ENSMMNG00015010324) NDUFAB1 (ENSMMNG00015010313) ENSMMNG00015010305 UBFD1 (ENSMMNG00015010282) ENSMMNG00015010261 Pecora ANCESTRAL SPECIES ENSGT00940000154457.a.a.d #22 Yarkand deer MODERN SPECIES 8 ENSCHYG00000017114 UGDH (ENSCHYG00000016766) ENSCHYG00000015244 RPL9 (ENSCHYG00000014866) ENSCHYG00000014844 KLB (ENSCHYG00000014744) RFC1 (ENSCHYG00000014461) WDR19 (ENSCHYG00000013487) KLHL5 (ENSCHYG00000012983) TMEM156 (ENSCHYG00000012866) FAM114A1 (ENSCHYG00000012688) TLR6 (ENSCHYG00000012665) TLR1 (ENSCHYG00000012651) TLR10 (ENSCHYG00000012632) KLF3 (ENSCHYG00000012587) ENSCHYG00000012569 #22 ENSCHYG00000012545 TBC1D1 (ENSCHYG00000011548) PGM2 (ENSCHYG00000011452) ENSCHYG00000011389 RELL1 (ENSCHYG00000011263) C4orf19 (ENSCHYG00000011230) NWD2 (ENSCHYG00000011104) DTHD1 (ENSCHYG00000010657) ARAP2 (ENSCHYG00000009613) ENSCHYG00000009498 PCDH7 (ENSCHYG00000009443) ENSCHYG00000009369 ENSCHYG00000009335 STIM2 (ENSCHYG00000009144) ENSCHYG00000009099 Euarchontoglires ANCESTRAL SPECIES 14 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT01040000242059 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00910000146920 ENSGT00940000163812 ENSGT01080000257504 ENSGT00940000157018 ENSGT01070000253857 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b Euarchontoglires_A ANCESTRAL SPECIES 13 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT01040000242059 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00940000163812 ENSGT00910000146920 ENSGT00940000157018 ENSGT01070000253857 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 Glires ANCESTRAL SPECIES 14 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT01040000242059 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00940000163812 ENSGT00910000146920 ENSGT00940000157018 ENSGT01070000253857 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 Lagomorpha ANCESTRAL SPECIES 81 ENSGT00950000182837.b.a ENSGT00940000155606.b ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a.k ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00940000154457.a.a #22 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b ENSGT00940000160612.d Pika DUPLICATION Pika DUPLICATION Pika MODERN SPECIES 3108 ENSOPRG00000015039 C1QL4 (ENSOPRG00000015033) ENSOPRG00000014992 ENSOPRG00000014971 ENSOPRG00000014959 #22 ENSOPRG00000014947 #22 Pika MODERN SPECIES 3108 ENSOPRG00000014947 #22 ENSOPRG00000014959 #22 ENSOPRG00000014971 ENSOPRG00000014992 C1QL4 (ENSOPRG00000015033) ENSOPRG00000015039 Pika MODERN SPECIES 6371 ENSOPRG00000018178 #22 Pika MODERN SPECIES 7336 ENSOPRG00000014803 #22 Rodentia ANCESTRAL SPECIES 14 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT01040000242059 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00940000163812 ENSGT00910000146920 ENSGT00940000157018 ENSGT01070000253857 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 Rodentia_B ANCESTRAL SPECIES ENSGT00940000154457.a.a #22 Kangaroo rat MODERN SPECIES 361 Bcdin3d (ENSDORG00000025460) Nckap5l (ENSDORG00000004822) #16 ENSDORG00000001282 Fmnl3 (ENSDORG00000000273) Prpf40b (ENSDORG00000000269) Fam186b (ENSDORG00000027101) Mcrs1 (ENSDORG00000011996) Kcnh3 (ENSDORG00000011997) Spats2 (ENSDORG00000030123) Dnajc22 (ENSDORG00000008232) C1ql4 (ENSDORG00000008234) Troap (ENSDORG00000008235) Prph (ENSDORG00000004920) Tuba1c (ENSDORG00000015065) ##21 Tuba1a (ENSDORG00000006812) ##21 ENSDORG00000000156 #22 ENSDORG00000008221 Dhh (ENSDORG00000024818) Rhebl1 (ENSDORG00000006513) ENSDORG00000027776 ENSDORG00000024758 Prkag1 (ENSDORG00000006505) Ddn (ENSDORG00000028862) Wnt1 (ENSDORG00000007735) Wnt10b (ENSDORG00000010403) Arf3 (ENSDORG00000024681) Ccdc65 (ENSDORG00000012748) Rnd1 (ENSDORG00000023400) Ddx23 (ENSDORG00000012659) Cacnb3 (ENSDORG00000012657) Adcy6 (ENSDORG00000005171) Myomorpha ANCESTRAL SPECIES ENSGT00940000154457.a.a #22 Muroidea ANCESTRAL SPECIES ENSGT00940000154457.a.a #22 Muroidea_A ANCESTRAL SPECIES ENSGT00940000154457.a.a #22 Cricetidae ANCESTRAL SPECIES ENSGT00940000154457.a.a #22 Cricetidae_B ANCESTRAL SPECIES ENSGT00940000154457.a.a #22 Northern American deer mouse MODERN SPECIES 6 ENSPEMG00000014664 #22 Erap1 (ENSPEMG00000018353) Cast (ENSPEMG00000012449) Pcsk1 (ENSPEMG00000006609) Ell2 (ENSPEMG00000015646) Glrx (ENSPEMG00000017750) Rhobtb3 (ENSPEMG00000011890) Spata9 (ENSPEMG00000011197) Rfesd (ENSPEMG00000014127) Gpr150 (ENSPEMG00000000751) Arsk (ENSPEMG00000014304) Skic3 (ENSPEMG00000018623) Fam81b (ENSPEMG00000020666) Mctp1 (ENSPEMG00000014096) Slf1 (ENSPEMG00000022525) 2210408I21Rik (ENSPEMG00000008563) Cricetinae ANCESTRAL SPECIES ENSGT00940000154457.a.a #22 Chinese hamster chok1gshd MODERN SPECIES 76 Rasgef1b (ENSCGRG00001019748) Prkg2 (ENSCGRG00001021769) Bmp3 (ENSCGRG00001013590) ENSCGRG00001002838 Cfap299 (ENSCGRG00001005694) Fgf5 (ENSCGRG00001014809) Prdm8 (ENSCGRG00001011271) Antxr2 (ENSCGRG00001004640) Gk2 (ENSCGRG00001001900) Naa11 (ENSCGRG00001001343) Paqr3 (ENSCGRG00001013078) Bmp2k (ENSCGRG00001009725) Anxa3 (ENSCGRG00001015457) Fras1 (ENSCGRG00001010821) ENSCGRG00001005376 ENSCGRG00001002514 #22 ENSCGRG00001021246 Cnot6l (ENSCGRG00001022099) Cxcl13 (ENSCGRG00001021479) ENSCGRG00001018445 ENSCGRG00001000219 ENSCGRG00001021211 Ccng2 (ENSCGRG00001000047) Ccni (ENSCGRG00001019404) Septin11 (ENSCGRG00001000184) Shroom3 (ENSCGRG00001013324) Ccdc158 (ENSCGRG00001020351) Stbd1 (ENSCGRG00001011602) Fam47e (ENSCGRG00001000514) Scarb2 (ENSCGRG00001014787) Nup54 (ENSCGRG00001019949) Rodentia_A ANCESTRAL SPECIES 13 ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00940000163812 ENSGT00910000146920 ENSGT00940000157018 ENSGT01070000253857 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 Sciuridae ANCESTRAL SPECIES 10 ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00940000163812 ENSGT00910000146920 ENSGT00940000157018 ENSGT01070000253857 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 Eurasian red squirrel MODERN SPECIES 12 CRYBA2 (ENSSVLG00005014007) CFAP65 (ENSSVLG00005014142) IHH (ENSSVLG00005014629) NHEJ1 (ENSSVLG00005014689) ENSSVLG00005014735 SLC23A3 (ENSSVLG00005014807) CNPPD1 (ENSSVLG00005015098) ENSSVLG00005015144 ZFAND2B (ENSSVLG00005015187) ABCB6 (ENSSVLG00005015299) ATG9A (ENSSVLG00005015521) ANKZF1 (ENSSVLG00005015600) GLB1L (ENSSVLG00005015724) STK16 (ENSSVLG00005015849) TUBA4A (ENSSVLG00005016017) ENSSVLG00005016074 #22 DNAJB2 (ENSSVLG00005016147) PTPRN (ENSSVLG00005016237) ENSSVLG00005016794 ENSSVLG00005016836 DNPEP (ENSSVLG00005016888) DES (ENSSVLG00005017173) SPEG (ENSSVLG00005017279) SPEGNB (ENSSVLG00005017796) ENSSVLG00005017859 GMPPA (ENSSVLG00005017884) ENSSVLG00005017975 ASIC4 (ENSSVLG00005018052) CHPF (ENSSVLG00005018279) TMEM198 (ENSSVLG00005018351) OBSL1 (ENSSVLG00005018410) Marmotini ANCESTRAL SPECIES 2 ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00940000163812 ENSGT00940000157018 ENSGT01070000253857 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 ENSGT00940000158471 Alpin marmot DUPLICATION Alpin marmot MODERN SPECIES 8 FEV (ENSMMMG00000019852) CRYBA2 (ENSMMMG00000019854) CFAP65 (ENSMMMG00000019864) IHH (ENSMMMG00000019944) NHEJ1 (ENSMMMG00000019945) SLC23A3 (ENSMMMG00000019955) CNPPD1 (ENSMMMG00000019961) RETREG2 (ENSMMMG00000019980) ZFAND2B (ENSMMMG00000019993) ABCB6 (ENSMMMG00000020000) ATG9A (ENSMMMG00000020023) ANKZF1 (ENSMMMG00000020070) GLB1L (ENSMMMG00000020077) STK16 (ENSMMMG00000020447) TUBA4A (ENSMMMG00000020450) ENSMMMG00000020453 #22 DNAJB2 (ENSMMMG00000020507) PTPRN (ENSMMMG00000020552) ENSMMMG00000020661 DNPEP (ENSMMMG00000020675) DES (ENSMMMG00000020720) ENSMMMG00000020764 ENSMMMG00000020788 GMPPA (ENSMMMG00000020792) ENSMMMG00000020798 ASIC4 (ENSMMMG00000020805) CHPF (ENSMMMG00000020826) TMEM198 (ENSMMMG00000020837) ENSMMMG00000020857 ENSMMMG00000020865 INHA (ENSMMMG00000020884) Alpin marmot MODERN SPECIES 5 ENSMMMG00000021196 THSD7B (ENSMMMG00000021210) HNMT (ENSMMMG00000021232) SPOPL (ENSMMMG00000021248) NXPH2 (ENSMMMG00000021251) LRP1B (ENSMMMG00000021313) KYNU (ENSMMMG00000021410) ARHGAP15 (ENSMMMG00000021442) ENSMMMG00000021461 GTDC1 (ENSMMMG00000021476) ZEB2 (ENSMMMG00000021492) ACVR2A (ENSMMMG00000021587) ENSMMMG00000021598 ENSMMMG00000021615 ENSMMMG00000021626 ENSMMMG00000021627 #22 EPC2 (ENSMMMG00000021637) ENSMMMG00000021646 KIF5C (ENSMMMG00000021654) LYPD6B (ENSMMMG00000021702) LYPD6 (ENSMMMG00000021723) MMADHC (ENSMMMG00000021733) RND3 (ENSMMMG00000021746) ENSMMMG00000021752 ENSMMMG00000021771 ENSMMMG00000021776 ENSMMMG00000021801 RBM43 (ENSMMMG00000021824) NMI (ENSMMMG00000021825) ENSMMMG00000021827 TNFAIP6 (ENSMMMG00000021834) Marmotini_b ANCESTRAL SPECIES 71 ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00940000163812 ENSGT00940000157018 ENSGT01070000253857 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 ENSGT00940000158471 Squirrel MODERN SPECIES 169 CRYBA2 (ENSSTOG00000009326) ENSSTOG00000009331 IHH (ENSSTOG00000027440) NHEJ1 (ENSSTOG00000022820) SLC23A3 (ENSSTOG00000009384) CNPPD1 (ENSSTOG00000009401) RETREG2 (ENSSTOG00000025849) ZFAND2B (ENSSTOG00000011063) ABCB6 (ENSSTOG00000011066) ATG9A (ENSSTOG00000023078) ENSSTOG00000030606 GLB1L (ENSSTOG00000011089) ENSSTOG00000011083 STK16 (ENSSTOG00000025197) TUBA4A (ENSSTOG00000019497) ENSSTOG00000025418 #22 DNAJB2 (ENSSTOG00000011511) PTPRN (ENSSTOG00000011522) ENSSTOG00000011538 DNPEP (ENSSTOG00000011546) DES (ENSSTOG00000012352) SPEG (ENSSTOG00000012359) SPEGNB (ENSSTOG00000034380) GMPPA (ENSSTOG00000028855) ASIC4 (ENSSTOG00000012402) CHPF (ENSSTOG00000012409) TMEM198 (ENSSTOG00000012415) OBSL1 (ENSSTOG00000012425) INHA (ENSSTOG00000012437) STK11IP (ENSSTOG00000012441) SLC4A3 (ENSSTOG00000003859) Arctic ground squirrel MODERN SPECIES 76 FEV (ENSUPAG00010012515) CRYBA2 (ENSUPAG00010012524) CFAP65 (ENSUPAG00010012541) IHH (ENSUPAG00010012634) NHEJ1 (ENSUPAG00010012641) SLC23A3 (ENSUPAG00010012663) CNPPD1 (ENSUPAG00010012676) ENSUPAG00010012690 ZFAND2B (ENSUPAG00010012706) ABCB6 (ENSUPAG00010012726) ATG9A (ENSUPAG00010012767) ANKZF1 (ENSUPAG00010012803) GLB1L (ENSUPAG00010012811) STK16 (ENSUPAG00010012826) TUBA4A (ENSUPAG00010012836) ENSUPAG00010012846 #22 DNAJB2 (ENSUPAG00010012939) PTPRN (ENSUPAG00010013022) ENSUPAG00010013057 ENSUPAG00010013060 ENSUPAG00010013070 DNPEP (ENSUPAG00010013076) DES (ENSUPAG00010013134) SPEG (ENSUPAG00010013153) ENSUPAG00010013257 GMPPA (ENSUPAG00010013262) ENSUPAG00010013318 ASIC4 (ENSUPAG00010013332) CHPF (ENSUPAG00010013363) TMEM198 (ENSUPAG00010013374) OBSL1 (ENSUPAG00010013394) Hystricomorpha ANCESTRAL SPECIES ENSGT00940000154457.a.a #22 Hystricomorpha_a ANCESTRAL SPECIES ENSGT00940000154457.a.a #22 Hystricomorpha_b ANCESTRAL SPECIES ENSGT00940000154457.a.a #22 Degu DUPLICATION Degu MODERN SPECIES 58 PIGC (ENSODEG00000020006) SUCO (ENSODEG00000012824) FASLG (ENSODEG00000013657) ENSODEG00000012275 ENSODEG00000011983 ENSODEG00000011586 TNFSF4 (ENSODEG00000013566) ENSODEG00000012361 ANKRD45 (ENSODEG00000015522) KLHL20 (ENSODEG00000011896) CENPL (ENSODEG00000012023) DARS2 (ENSODEG00000012436) ZBTB37 (ENSODEG00000012780) ENSODEG00000011939 RC3H1 (ENSODEG00000014185) ENSODEG00000013399 #22 ENSODEG00000012722 GPR52 (ENSODEG00000020014) ENSODEG00000019890 ENSODEG00000012029 ENSODEG00000013023 ENSODEG00000013050 MRPS14 (ENSODEG00000011705) TNN (ENSODEG00000011528) TNR (ENSODEG00000010742) ENSODEG00000019950 COP1 (ENSODEG00000011329) ENSODEG00000011378 ENSODEG00000010604 ENSODEG00000019845 PAPPA2 (ENSODEG00000010628) Degu MODERN SPECIES 167 ENSODEG00000012770 ENSODEG00000013317 ENSODEG00000012608 CDC25A (ENSODEG00000013712) NME6 (ENSODEG00000013578) OSBPL11 (ENSODEG00000012476) B3GNT5 (ENSODEG00000020343) ENSODEG00000012517 KLHL24 (ENSODEG00000015151) YEATS2 (ENSODEG00000015298) MAP6D1 (ENSODEG00000013420) PARL (ENSODEG00000013822) ENSODEG00000014006 ABCC5 (ENSODEG00000014249) ENSODEG00000012268 ENSODEG00000012404 #22 EIF2B5 (ENSODEG00000012756) DVL3 (ENSODEG00000012849) AP2M1 (ENSODEG00000012988) ABCF3 (ENSODEG00000013982) VWA5B2 (ENSODEG00000013878) ALG3 (ENSODEG00000013548) ECE2 (ENSODEG00000015263) CAMK2N2 (ENSODEG00000012896) PSMD2 (ENSODEG00000013158) ENSODEG00000013872 ENSODEG00000012718 FAM131A (ENSODEG00000013175) CLCN2 (ENSODEG00000014349) ENSODEG00000013008 ENSODEG00000014007 Long-tailed chinchilla MODERN SPECIES 276 ENSCLAG00000000258 ENSCLAG00000000656 ENSCLAG00000000676 ENSCLAG00000000731 ENSCLAG00000000777 ENSCLAG00000000243 ENSCLAG00000000057 ENSCLAG00000000062 ENSCLAG00000000083 ENSCLAG00000000095 ENSCLAG00000000142 ENSCLAG00000000293 ENSCLAG00000000338 #22 ENSCLAG00000000161 ENSCLAG00000000179 ENSCLAG00000000391 ENSCLAG00000000840 ENSCLAG00000000885 Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES 7 ENSHGLG00000045617 BHMT (ENSHGLG00000050585) BHMT2 (ENSHGLG00000036952) DMGDH (ENSHGLG00000000837) ARSB (ENSHGLG00000000586) ENSHGLG00000000380 ENSHGLG00000040355 ENSHGLG00000035099 SCAMP1 (ENSHGLG00000048514) AP3B1 (ENSHGLG00000001480) ENSHGLG00000019786 ENSHGLG00000000425 OTP (ENSHGLG00000003908) ENSHGLG00000017808 ENSHGLG00000038347 ENSHGLG00000041303 #22 ENSHGLG00000002178 ENSHGLG00000038975 ZBED3 (ENSHGLG00000042521) AGGF1 (ENSHGLG00000000455) ENSHGLG00000001729 ENSHGLG00000001594 S100Z (ENSHGLG00000047331) ENSHGLG00000044569 ENSHGLG00000000412 ENSHGLG00000001189 F2RL2 (ENSHGLG00000001444) ENSHGLG00000001079 ENSHGLG00000000494 ENSHGLG00000002909 ENSHGLG00000001351 Naked mole-rat female MODERN SPECIES 8 E2F7 (ENSHGLG00000006491) NAV3 (ENSHGLG00000012083) ENSHGLG00000010015 ENSHGLG00000042592 SYT1 (ENSHGLG00000047548) PAWR (ENSHGLG00000017940) ENSHGLG00000036431 PPP1R12A (ENSHGLG00000014201) OTOGL (ENSHGLG00000013295) PTPRQ (ENSHGLG00000011762) MYF6 (ENSHGLG00000003419) MYF5 (ENSHGLG00000003654) ENSHGLG00000003757 ACSS3 (ENSHGLG00000004579) PPFIA2 (ENSHGLG00000000429) ENSHGLG00000036317 #22 CCDC59 (ENSHGLG00000001711) METTL25 (ENSHGLG00000038393) TMTC2 (ENSHGLG00000000320) ENSHGLG00000018244 ENSHGLG00000000758 ENSHGLG00000000965 LRRIQ1 (ENSHGLG00000000302) ALX1 (ENSHGLG00000000937) ENSHGLG00000036253 RASSF9 (ENSHGLG00000034316) NTS (ENSHGLG00000001320) Primates ANCESTRAL SPECIES 13 ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00910000146920 ENSGT00940000163812 ENSGT01080000257504 ENSGT00940000157018 ENSGT01070000253857 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b Haplorrhini ANCESTRAL SPECIES 10 ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00940000163812 ENSGT00910000146920 ENSGT00940000157018 ENSGT01080000257504 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 Tarsier MODERN SPECIES 4547 WNT10A (ENSTSYG00000025654) CRYBA2 (ENSTSYG00000013997) CFAP65 (ENSTSYG00000001842) IHH (ENSTSYG00000027903) NHEJ1 (ENSTSYG00000008101) SLC23A3 (ENSTSYG00000008144) CNPPD1 (ENSTSYG00000030043) RETREG2 (ENSTSYG00000029557) ZFAND2B (ENSTSYG00000011643) ABCB6 (ENSTSYG00000011725) ATG9A (ENSTSYG00000011740) ANKZF1 (ENSTSYG00000011747) GLB1L (ENSTSYG00000011748) STK16 (ENSTSYG00000011749) TUBA4A (ENSTSYG00000011750) TUBA4B (ENSTSYG00000006608) #22 DNAJB2 (ENSTSYG00000032934) PTPRN (ENSTSYG00000028843) RESP18 (ENSTSYG00000036994) DNPEP (ENSTSYG00000012757) DES (ENSTSYG00000002577) SPEG (ENSTSYG00000028472) SPEGNB (ENSTSYG00000034494) ENSTSYG00000034447 GMPPA (ENSTSYG00000002895) ENSTSYG00000036310 ASIC4 (ENSTSYG00000035540) CHPF (ENSTSYG00000030277) TMEM198 (ENSTSYG00000005705) OBSL1 (ENSTSYG00000034296) INHA (ENSTSYG00000029739) Simiiformes ANCESTRAL SPECIES 15 ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00940000163812 ENSGT00910000146920 ENSGT00940000157018 ENSGT01080000257504 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 Catarrhini ANCESTRAL SPECIES 16 ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00940000163812 ENSGT00910000146920 ENSGT00940000157018 ENSGT01080000257504 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 Hominoidea ANCESTRAL SPECIES 15 ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00940000163812 ENSGT00910000146920 ENSGT00940000157018 ENSGT01080000257504 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 Hominidae ANCESTRAL SPECIES 17 ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00940000163812 ENSGT00910000146920 ENSGT00940000157018 ENSGT01080000257504 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 Homo/Pan/Gorilla group ANCESTRAL SPECIES 14 ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00940000163812 ENSGT00910000146920 ENSGT00940000157018 ENSGT01080000257504 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 Homo/Pan group ANCESTRAL SPECIES 13 ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00940000163812 ENSGT00910000146920 ENSGT00940000157018 ENSGT01080000257504 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 Pan ANCESTRAL SPECIES 12 ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00940000163812 ENSGT00910000146920 ENSGT00940000157018 ENSGT01080000257504 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 Bonobo MODERN SPECIES 15 ENSPPAG00000018034 CRYBA2 (ENSPPAG00000018250) CFAP65 (ENSPPAG00000020522) IHH (ENSPPAG00000034087) NHEJ1 (ENSPPAG00000042844) SLC23A3 (ENSPPAG00000041866) CNPPD1 (ENSPPAG00000034311) RETREG2 (ENSPPAG00000040645) ZFAND2B (ENSPPAG00000034039) ABCB6 (ENSPPAG00000031060) ATG9A (ENSPPAG00000035200) ANKZF1 (ENSPPAG00000031695) GLB1L (ENSPPAG00000035895) TUBA4A (ENSPPAG00000011142) STK16 (ENSPPAG00000030750) TUBA4B (ENSPPAG00000031611) #22 DNAJB2 (ENSPPAG00000030650) PTPRN (ENSPPAG00000041023) RESP18 (ENSPPAG00000037556) DNPEP (ENSPPAG00000032275) DES (ENSPPAG00000029971) SPEG (ENSPPAG00000030686) SPEGNB (ENSPPAG00000042274) ENSPPAG00000007591 GMPPA (ENSPPAG00000027140) ENSPPAG00000003233 ENSPPAG00000040744 CHPF (ENSPPAG00000031735) TMEM198 (ENSPPAG00000028455) OBSL1 (ENSPPAG00000037124) INHA (ENSPPAG00000043060) Chimpanzee MODERN SPECIES 15 FEV (ENSPTRG00000045039) CRYBA2 (ENSPTRG00000012934) CFAP65 (ENSPTRG00000012937) IHH (ENSPTRG00000012938) NHEJ1 (ENSPTRG00000034481) SLC23A3 (ENSPTRG00000012940) CNPPD1 (ENSPTRG00000012941) RETREG2 (ENSPTRG00000012942) ZFAND2B (ENSPTRG00000012944) ABCB6 (ENSPTRG00000012945) ATG9A (ENSPTRG00000012943) ANKZF1 (ENSPTRG00000012946) GLB1L (ENSPTRG00000012947) TUBA4A (ENSPTRG00000012949) STK16 (ENSPTRG00000012948) TUBA4B (ENSPTRG00000045592) #22 DNAJB2 (ENSPTRG00000012951) PTPRN (ENSPTRG00000012952) RESP18 (ENSPTRG00000012953) DNPEP (ENSPTRG00000012954) DES (ENSPTRG00000012955) SPEG (ENSPTRG00000012957) SPEGNB (ENSPTRG00000047748) ENSPTRG00000050174 GMPPA (ENSPTRG00000012959) ENSPTRG00000043499 ASIC4 (ENSPTRG00000012960) CHPF (ENSPTRG00000012961) TMEM198 (ENSPTRG00000012962) OBSL1 (ENSPTRG00000012963) INHA (ENSPTRG00000012964) Human MODERN SPECIES 11 FEV (ENSG00000163497) CRYBA2 (ENSG00000163499) CFAP65 (ENSG00000181378) IHH (ENSG00000163501) NHEJ1 (ENSG00000187736) SLC23A3 (ENSG00000213901) CNPPD1 (ENSG00000115649) RETREG2 (ENSG00000144567) ZFAND2B (ENSG00000158552) ABCB6 (ENSG00000115657) ATG9A (ENSG00000198925) ANKZF1 (ENSG00000163516) GLB1L (ENSG00000163521) STK16 (ENSG00000115661) TUBA4A (ENSG00000127824) TUBA4B (ENSG00000243910) #22 DNAJB2 (ENSG00000135924) PTPRN (ENSG00000054356) RESP18 (ENSG00000182698) DNPEP (ENSG00000123992) DES (ENSG00000175084) SPEG (ENSG00000072195) ENSG00000286143 SPEGNB (ENSG00000286095) GMPPA (ENSG00000144591) ASIC4 (ENSG00000072182) CHPF (ENSG00000123989) TMEM198 (ENSG00000188760) OBSL1 (ENSG00000124006) INHA (ENSG00000123999) STK11IP (ENSG00000144589) Gorilla MODERN SPECIES 15 CYP27A1 (ENSGGOG00000003243) PRKAG3 (ENSGGOG00000003249) WNT6 (ENSGGOG00000003259) WNT10A (ENSGGOG00000000870) ENSGGOG00000007771 FEV (ENSGGOG00000010787) CRYBA2 (ENSGGOG00000010794) CFAP65 (ENSGGOG00000010798) ENSGGOG00000041386 NHEJ1 (ENSGGOG00000010822) SLC23A3 (ENSGGOG00000010828) CNPPD1 (ENSGGOG00000010837) RETREG2 (ENSGGOG00000010846) STK16 (ENSGGOG00000010907) TUBA4A (ENSGGOG00000023578) TUBA4B (ENSGGOG00000040612) #22 DNAJB2 (ENSGGOG00000010915) PTPRN (ENSGGOG00000011854) RESP18 (ENSGGOG00000004296) DNPEP (ENSGGOG00000003423) DES (ENSGGOG00000002710) SPEG (ENSGGOG00000044111) SPEGNB (ENSGGOG00000039116) ENSGGOG00000037437 GMPPA (ENSGGOG00000002725) ENSGGOG00000042221 ASIC4 (ENSGGOG00000002730) CHPF (ENSGGOG00000002736) TMEM198 (ENSGGOG00000003590) OBSL1 (ENSGGOG00000003593) INHA (ENSGGOG00000003603) Orangutan MODERN SPECIES 15 FEV (ENSPPYG00000013189) CRYBA2 (ENSPPYG00000013190) CFAP65 (ENSPPYG00000013191) IHH (ENSPPYG00000033632) NHEJ1 (ENSPPYG00000013193) SLC23A3 (ENSPPYG00000013194) CNPPD1 (ENSPPYG00000013195) ENSPPYG00000013196 ZFAND2B (ENSPPYG00000013197) ABCB6 (ENSPPYG00000013198) ATG9A (ENSPPYG00000013199) ANKZF1 (ENSPPYG00000013200) GLB1L (ENSPPYG00000013201) STK16 (ENSPPYG00000013202) TUBA4A (ENSPPYG00000013203) TUBA4B (ENSPPYG00000038644) #22 DNAJB2 (ENSPPYG00000013204) PTPRN (ENSPPYG00000013205) ENSPPYG00000013206 DNPEP (ENSPPYG00000013207) DES (ENSPPYG00000039389) SPEG (ENSPPYG00000013208) SPEGNB (ENSPPYG00000033057) GMPPA (ENSPPYG00000013209) ENSPPYG00000013210 CHPF (ENSPPYG00000013211) TMEM198 (ENSPPYG00000013212) OBSL1 (ENSPPYG00000013213) INHA (ENSPPYG00000013214) STK11IP (ENSPPYG00000013215) SLC4A3 (ENSPPYG00000013216) Gibbon MODERN SPECIES 14 FEV (ENSNLEG00000009001) CRYBA2 (ENSNLEG00000009012) CFAP65 (ENSNLEG00000009025) IHH (ENSNLEG00000009054) NHEJ1 (ENSNLEG00000009056) SLC23A3 (ENSNLEG00000009070) CNPPD1 (ENSNLEG00000034862) RETREG2 (ENSNLEG00000035903) ZFAND2B (ENSNLEG00000009113) ABCB6 (ENSNLEG00000009125) ATG9A (ENSNLEG00000009166) ANKZF1 (ENSNLEG00000009207) GLB1L (ENSNLEG00000009246) STK16 (ENSNLEG00000034331) TUBA4A (ENSNLEG00000027445) TUBA4B (ENSNLEG00000009327) #22 ENSNLEG00000009330 PTPRN (ENSNLEG00000009337) ENSNLEG00000030465 DNPEP (ENSNLEG00000009368) DES (ENSNLEG00000009433) SPEG (ENSNLEG00000009468) SPEGNB (ENSNLEG00000032398) ENSNLEG00000034644 GMPPA (ENSNLEG00000009508) ENSNLEG00000028627 ENSNLEG00000009517 CHPF (ENSNLEG00000009523) TMEM198 (ENSNLEG00000009531) ENSNLEG00000009540 INHA (ENSNLEG00000009559) Platyrrhini ANCESTRAL SPECIES ENSGT00940000154457.a.a #22 Cebidae ANCESTRAL SPECIES ENSGT00940000154457.a.a #22 Cebidae_a ANCESTRAL SPECIES 5 ENSGT00940000153993.B ENSGT00530000063607.a #16 ENSGT01050000244940.a.a #15 ENSGT00940000159962 ENSGT00930000150980.b ENSGT00940000162031 ENSGT00390000005536.e ENSGT00940000161742 ENSGT00390000001138.a ENSGT00390000012136 ENSGT00940000155969 ENSGT00390000012132 ENSGT00940000160203 ENSGT00940000154457.a.b ##22 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.m ##21 ENSGT00940000154457.a.a #22 ENSGT00950000182825.A.a.b.a.b.a.b.b ##21 ENSGT00390000007809.a ENSGT00940000161132 ENSGT00940000161665 ENSGT00940000156707 ENSGT00950000183019.f.b.a ENSGT00390000016495 ENSGT00940000160329 ENSGT00940000160653 ENSGT00950000183080.a.a ENSGT00560000078683 ENSGT00940000159521 ENSGT00950000182960.a.a.a.a.b.rb.n.a.a ENSGT00940000153804.B ENSGT00940000158666 Bolivian squirrel monkey MODERN SPECIES 153 NCKAP5L (ENSSBOG00000028145) #16 TMBIM6 (ENSSBOG00000024527) #15 FMNL3 (ENSSBOG00000026511) PRPF40B (ENSSBOG00000025670) ENSSBOG00000027018 FAM186B (ENSSBOG00000016980) ENSSBOG00000036027 KCNH3 (ENSSBOG00000027569) SPATS2 (ENSSBOG00000023909) DNAJC22 (ENSSBOG00000033980) C1QL4 (ENSSBOG00000033432) TROAP (ENSSBOG00000034178) PRPH (ENSSBOG00000032145) ENSSBOG00000005771 ##22 TUBA1B (ENSSBOG00000022158) ##21 ENSSBOG00000028238 #22 LMBR1L (ENSSBOG00000023418) DHH (ENSSBOG00000036092) RHEBL1 (ENSSBOG00000035130) KMT2D (ENSSBOG00000035169) PRKAG1 (ENSSBOG00000021677) DDN (ENSSBOG00000021863) WNT1 (ENSSBOG00000023811) WNT10B (ENSSBOG00000016250) ARF3 (ENSSBOG00000021606) ENSSBOG00000018490 FKBP11 (ENSSBOG00000023963) ENSSBOG00000034756 ENSSBOG00000029649 CCDC65 (ENSSBOG00000023064) RND1 (ENSSBOG00000001346) Atlantogenata DUPLICATION Atlantogenata DUPLICATION Atlantogenata ANCESTRAL SPECIES ENSGT00940000154457.a.a.n.a #22 Afrotheria ANCESTRAL SPECIES ENSGT00940000154457.a.a.n.a #22 Afrotheria_a ANCESTRAL SPECIES ENSGT00940000154457.a.a.n.a #22 Elephant MODERN SPECIES 180 NANP (ENSLAFG00000015738) ENSLAFG00000028792 #22 ENSLAFG00000012710 ABHD12 (ENSLAFG00000002307) PYGB (ENSLAFG00000029096) ENTPD6 (ENSLAFG00000015560) VSX1 (ENSLAFG00000018392) ACSS1 (ENSLAFG00000011493) APMAP (ENSLAFG00000011820) CST7 (ENSLAFG00000022218) SYNDIG1 (ENSLAFG00000013030) CST3 (ENSLAFG00000015020) ENSLAFG00000002805 ENSLAFG00000006741 CST8 (ENSLAFG00000002803) ENSLAFG00000030756 ENSLAFG00000008240 Tenrec MODERN SPECIES 10860 ENSETEG00000000832 #22 Xenarthra ANCESTRAL SPECIES ENSGT00940000154457.a.a.n.a #22 Armadillo MODERN SPECIES 1454 RCL1 (ENSDNOG00000019911) AK3 (ENSDNOG00000038787) CDC37L1 (ENSDNOG00000015975) PLPP6 (ENSDNOG00000015974) SPATA6L (ENSDNOG00000038916) SLC1A1 (ENSDNOG00000001798) ENSDNOG00000042157 ENSDNOG00000035748 ENSDNOG00000042655 ENSDNOG00000012636 RFX3 (ENSDNOG00000018668) PUM3 (ENSDNOG00000008157) KCNV2 (ENSDNOG00000041737) VLDLR (ENSDNOG00000001086) SMARCA2 (ENSDNOG00000006402) ENSDNOG00000040306 #22 ST8SIA4 (ENSDNOG00000046147) Atlantogenata ANCESTRAL SPECIES ENSGT00940000154457.a.a.n.b #22 Xenarthra ANCESTRAL SPECIES ENSGT00940000154457.a.a.n.b #22 Armadillo DUPLICATION Armadillo MODERN SPECIES 3183 ENSDNOG00000031267 ENSDNOG00000033063 #22 Armadillo MODERN SPECIES 2774 SDHAF3 (ENSDNOG00000034065) DLX5 (ENSDNOG00000008778) DLX6 (ENSDNOG00000031561) SEM1 (ENSDNOG00000048095) ENSDNOG00000039816 #22 SLC25A13 (ENSDNOG00000015565) ENSDNOG00000047415 ENSDNOG00000033564 PDK4 (ENSDNOG00000012861) ASB4 (ENSDNOG00000043911) PON2 (ENSDNOG00000048645) PON3 (ENSDNOG00000005791) PON1 (ENSDNOG00000006882) PPP1R9A (ENSDNOG00000006871) ENSDNOG00000036759 SGCE (ENSDNOG00000002355) CASD1 (ENSDNOG00000007252) ENSDNOG00000045185 COL1A2 (ENSDNOG00000001921) Atlantogenata ANCESTRAL SPECIES ENSGT00940000154457.a.a.o #22 Afrotheria ANCESTRAL SPECIES 1 ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a.o #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00940000157018 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 ENSGT00940000158471 ENSGT00940000159765 ENSGT00940000156948 ENSGT00940000156504 Afrotheria_a ANCESTRAL SPECIES 1 ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a.o #22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00940000157018 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 ENSGT00940000158471 ENSGT00940000159765 ENSGT00940000156948 ENSGT00940000156504 Hyrax MODERN SPECIES 4291 ZFAND2B (ENSPCAG00000002022) ABCB6 (ENSPCAG00000002055) ATG9A (ENSPCAG00000002161) ANKZF1 (ENSPCAG00000002281) GLB1L (ENSPCAG00000002335) STK16 (ENSPCAG00000002450) TUBA4A (ENSPCAG00000002485) TUBA4B (ENSPCAG00000002517) #22 DNAJB2 (ENSPCAG00000002528) PTPRN (ENSPCAG00000002587) Xenarthra ANCESTRAL SPECIES 73 ENSGT00940000153993.B ENSGT00530000063607.a #16 ENSGT01050000244940.a.a #15 ENSGT00940000159962 ENSGT00930000150980.b ENSGT00940000162031 ENSGT00940000161742 ENSGT00390000001138.a ENSGT00390000012136 ENSGT00940000155969 ENSGT00390000012132 ENSGT00940000160203 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00940000154457.a.a.o #22 ENSGT00940000161665 ENSGT00940000156707 ENSGT00950000183019.f.b.a ENSGT00390000016495 ENSGT00940000160329 ENSGT00940000160653 ENSGT00950000183080.a.a ENSGT00940000159521 ENSGT00940000153804.B ENSGT00940000158666 ENSGT00940000155606.b ENSGT00950000182837.b.a ENSGT00940000155687 ENSGT00390000010327 Sloth MODERN SPECIES 8644 ENSCHOG00000008921 #22 Armadillo DUPLICATION Armadillo DUPLICATION Armadillo MODERN SPECIES 4263 ENSDNOG00000033314 ENSDNOG00000045899 #22 ENSDNOG00000043135 CNTNAP5 (ENSDNOG00000002344) Armadillo MODERN SPECIES 3535 ENSDNOG00000036704 ENSDNOG00000038380 #22 C5AR1 (ENSDNOG00000038763) DHX34 (ENSDNOG00000031738) MEIS3 (ENSDNOG00000005541) SLC8A2 (ENSDNOG00000024107) KPTN (ENSDNOG00000043885) NAPA (ENSDNOG00000032517) ZNF541 (ENSDNOG00000049267) BICRA (ENSDNOG00000044109) ENSDNOG00000043390 Armadillo MODERN SPECIES 4535 PRR5L (ENSDNOG00000005900) TRAF6 (ENSDNOG00000031700) RAG1 (ENSDNOG00000006294) RAG2 (ENSDNOG00000032392) IFTAP (ENSDNOG00000039872) ENSDNOG00000043539 ENSDNOG00000044998 #22 ENSDNOG00000041722 Armadillo MODERN SPECIES 2554 OLIG3 (ENSDNOG00000042405) ENSDNOG00000033108 #22 ENSDNOG00000047511 ENSDNOG00000049724 IL22RA2 (ENSDNOG00000035934) IL20RA (ENSDNOG00000034429) SLC35D3 (ENSDNOG00000036032) PEX7 (ENSDNOG00000039698) MAP3K5 (ENSDNOG00000019294) MAP7 (ENSDNOG00000013217) BCLAF1 (ENSDNOG00000019473) ENSDNOG00000032576 PDE7B (ENSDNOG00000041927) AHI1 (ENSDNOG00000003425) Armadillo MODERN SPECIES 311 ENSDNOG00000033170 NCKAP5L (ENSDNOG00000049196) #16 TMBIM6 (ENSDNOG00000049468) #15 FMNL3 (ENSDNOG00000016285) PRPF40B (ENSDNOG00000044961) ENSDNOG00000019053 KCNH3 (ENSDNOG00000033584) ENSDNOG00000038206 DNAJC22 (ENSDNOG00000001855) C1QL4 (ENSDNOG00000017845) TROAP (ENSDNOG00000017843) PRPH (ENSDNOG00000035037) ENSDNOG00000004121 ##21 ENSDNOG00000039572 #22 RHEBL1 (ENSDNOG00000006437) KMT2D (ENSDNOG00000041118) PRKAG1 (ENSDNOG00000006640) DDN (ENSDNOG00000042932) WNT1 (ENSDNOG00000006617) WNT10B (ENSDNOG00000006613) ARF3 (ENSDNOG00000010454) ENSDNOG00000035391 CCDC65 (ENSDNOG00000006591) RND1 (ENSDNOG00000035948) DDX23 (ENSDNOG00000043176) CACNB3 (ENSDNOG00000043665) ADCY6 (ENSDNOG00000040679) TEX49 (ENSDNOG00000048512) Gnathostomata ANCESTRAL SPECIES 381 ENSGT00940000160653 ENSGT00940000159281 ENSGT00940000160329 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000165909 ENSGT00950000182825.A.a.b.a.b.a.a.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 Euteleostomi ANCESTRAL SPECIES 1278 ENSGT00940000154457.a.a #22 ENSGT00940000154457.a.b ##22 Sarcopterygii ANCESTRAL SPECIES 1091 ENSGT00940000154457.a.a #22 ENSGT00940000154457.a.b ##22 Tetrapoda ANCESTRAL SPECIES 52 ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00950000183019.f.b.a ENSGT01100000266433 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00950000182825.A.a.b.a.b.a.b ##21 ENSGT00940000154457.a.a #22 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000161997.b ENSGT00940000159891 ENSGT00390000002689 ENSGT00940000161168 ENSGT00940000156832 ENSGT00390000013978.d ENSGT00940000161052 ENSGT00390000002944 #19 ENSGT00950000183178.a Amniota ANCESTRAL SPECIES 30 ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00940000154457.b ##22 ENSGT00950000183165.b.b ENSGT00950000182825.A.a.b.a.b.a.b ##21 ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000161052 ENSGT00390000002944 #19 ENSGT01050000245365 ENSGT00940000178340 ENSGT00950000183178.a ENSGT00940000155637 ENSGT00390000016940.c.a ENSGT00940000158593 Sauria ANCESTRAL SPECIES 25 ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00940000154457.b ##22 ENSGT00950000182825.A.a.b.a.b.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.a.b #21 ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000159891 ENSGT00390000002689 ENSGT00940000161168 ENSGT00940000156832 ENSGT00940000156785 ENSGT00940000161052 ENSGT00390000002944 #19 ENSGT01050000245365 Archelosauria ANCESTRAL SPECIES 26 ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00940000154457.b ##22 ENSGT00950000182825.A.a.b.a.b.a.b ##21 ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00940000154457.a.a #22 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000159891 ENSGT00390000002689 ENSGT00940000161168 ENSGT00940000156832 ENSGT00940000156785 ENSGT00940000161052 ENSGT00390000002944 #19 ENSGT01050000245365 Cryptodira ANCESTRAL SPECIES 25 ENSGT00950000182837.b.a ENSGT00940000155606.b ENSGT00940000158666 ENSGT00940000153804.B.h ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000159891 ENSGT00390000002689 ENSGT00940000161168 ENSGT00940000156785 ENSGT00940000156832 ENSGT00940000161052 ENSGT00390000002944 #19 ENSGT01050000245365 Chinese turtle MODERN SPECIES 1705 CCNT1 (ENSPSIG00000002720) #17 TEX49 (ENSPSIG00000002744) ADCY6 (ENSPSIG00000002748) CACNB3 (ENSPSIG00000002821) DDX23 (ENSPSIG00000002834) RND1 (ENSPSIG00000002860) CCDC65 (ENSPSIG00000002864) FKBP11 (ENSPSIG00000002874) ENSPSIG00000002878 ENSPSIG00000002881 WNT1 (ENSPSIG00000002885) RHEBL1 (ENSPSIG00000002887) DHH (ENSPSIG00000002888) LMBR1L (ENSPSIG00000002900) TUBA1B (ENSPSIG00000002906) ##21 ENSPSIG00000002936 ##22 PRPH (ENSPSIG00000002950) DNAJC22 (ENSPSIG00000002958) SPATS2 (ENSPSIG00000002965) KCNH3 (ENSPSIG00000002968) MCRS1 (ENSPSIG00000002974) ITGA7 (ENSPSIG00000002981) BLOC1S1 (ENSPSIG00000002990) RDH5 (ENSPSIG00000002991) ENSPSIG00000002995 GDF11 (ENSPSIG00000002996) SARNP (ENSPSIG00000002998) #19 ORMDL2 (ENSPSIG00000003006) DNAJC14 (ENSPSIG00000003016) MMP19 (ENSPSIG00000003021) CDK2 (ENSPSIG00000003036) Testudinoidea ANCESTRAL SPECIES 21 ENSGT00940000158666 ENSGT00940000153804.B.g ENSGT00940000153804.B.h ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00940000154457.a.a #22 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000159891 ENSGT00390000002689 ENSGT00940000161168 ENSGT00940000156832 ENSGT00940000156785 ENSGT00940000161052 ENSGT00390000002944 #19 ENSGT01050000245365 Testudinidae ANCESTRAL SPECIES 25 ENSGT00940000158666 ENSGT00940000153804.B.g ENSGT00940000153804.B.h ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.b ##21 ENSGT00940000154457.a.a #22 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000159891 ENSGT00390000002689 ENSGT00940000161168 ENSGT00940000156832 ENSGT00940000156785 ENSGT00940000161052 ENSGT00390000002944 #19 ENSGT01050000245365 Goode s thornscrub tortoise MODERN SPECIES 17 RND1 (ENSGEVG00005008717) ENSGEVG00005008701 ENSGEVG00005008679 FKBP11 (ENSGEVG00005008664) ARF3 (ENSGEVG00005008644) WNT10B (ENSGEVG00005008535) WNT1 (ENSGEVG00005008476) ENSGEVG00005008432 PRKAG1 (ENSGEVG00005008401) ENSGEVG00005008350 RHEBL1 (ENSGEVG00005008190) DHH (ENSGEVG00005008078) LMBR1L (ENSGEVG00005007977) ENSGEVG00005007941 ##21 ENSGEVG00005007919 #22 ENSGEVG00005007895 ##22 PRPH (ENSGEVG00005007842) C1QL4 (ENSGEVG00005007818) DNAJC22 (ENSGEVG00005007795) SPATS2 (ENSGEVG00005007708) KCNH3 (ENSGEVG00005007545) MCRS1 (ENSGEVG00005007469) ITGA7 (ENSGEVG00005007223) BLOC1S1 (ENSGEVG00005007167) RDH5 (ENSGEVG00005007037) CD63 (ENSGEVG00005006974) ENSGEVG00005006951 GDF11 (ENSGEVG00005006922) ENSGEVG00005006890 ENSGEVG00005006869 ORMDL2 (ENSGEVG00005006848) Emydidae ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Three-toed box turtle MODERN SPECIES 2443 ENSTMTG00000015965 ##22 Lepidosauria ANCESTRAL SPECIES 132 ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000159891 ENSGT00390000002689 ENSGT00940000161168 Episquamata ANCESTRAL SPECIES 4 ENSGT00730000111107 ENSGT00940000158593 ENSGT00390000016940.c.a ENSGT00940000155637 ENSGT00940000161052 ENSGT00390000002944 #19 ENSGT00940000178340 ENSGT00950000183178.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000159891 ENSGT00390000002689 ENSGT00940000161168 ENSGT00940000156832 ENSGT00730000111057 ENSGT00960000191166 ENSGT00390000005481 ENSGT00940000158838 ENSGT00940000155641 Laterata ANCESTRAL SPECIES 1 ENSGT00940000157144 ENSGT00730000111107 ENSGT00940000158593 ENSGT00390000016940.c.a ENSGT00940000155637 ENSGT00940000161052 ENSGT00390000002944 #19 ENSGT00950000183178.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000159891 ENSGT00390000002689 ENSGT00940000161168 ENSGT00940000156832 ENSGT00730000111057 ENSGT00960000191166 ENSGT00390000005481 ENSGT00940000158838 ENSGT00940000155641 Argentine black and white tegu MODERN SPECIES 73 PMEL (ENSSMRG00000004981) #20 DGKA (ENSSMRG00000004995) PYM1 (ENSSMRG00000005004) MMP19 (ENSSMRG00000005033) ENSSMRG00000005035 DNAJC14 (ENSSMRG00000005039) GDF11 (ENSSMRG00000005040) SARNP (ENSSMRG00000005051) #19 ORMDL2 (ENSSMRG00000005073) KMT2D (ENSSMRG00000005092) RHEBL1 (ENSSMRG00000005440) DHH (ENSSMRG00000005456) LMBR1L (ENSSMRG00000005473) ENSSMRG00000005477 ##21 ENSSMRG00000005481 ##21 ENSSMRG00000005482 ##22 PRPH (ENSSMRG00000005483) C1QL4 (ENSSMRG00000005513) DNAJC22 (ENSSMRG00000005516) SPATS2 (ENSSMRG00000005527) ENSSMRG00000005532 KCNH3 (ENSSMRG00000005537) MCRS1 (ENSSMRG00000005622) ENSSMRG00000005634 ITGA7 (ENSSMRG00000005635) BLOC1S1 (ENSSMRG00000005648) RDH5 (ENSSMRG00000005649) CD63 (ENSSMRG00000005674) ZNF207 (ENSSMRG00000005675) C17orf75 (ENSSMRG00000005678) RHBDL3 (ENSSMRG00000005691) Toxicofera ANCESTRAL SPECIES 3 ENSGT00940000157144 ENSGT00730000111107 ENSGT00940000158593 ENSGT00390000016940.c.a ENSGT00940000155637 ENSGT00940000161052 ENSGT00390000002944 #19 ENSGT00940000178340 ENSGT00950000183178.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000159891 ENSGT00390000002689 ENSGT00940000161168 ENSGT00940000156832 ENSGT00730000111057 ENSGT00390000005481 ENSGT00940000158838 ENSGT00940000155641 ENSGT00940000164538 Lizard MODERN SPECIES 812 PYM1 (ENSACAG00000005714) ENSACAG00000040945 MMP19 (ENSACAG00000015336) ENSACAG00000015363 DNAJC14 (ENSACAG00000015368) GDF11 (ENSACAG00000015420) ENSACAG00000039951 ENSACAG00000015446 #19 ORMDL2 (ENSACAG00000015457) RHEBL1 (ENSACAG00000015505) ENSACAG00000044799 DHH (ENSACAG00000015545) LMBR1L (ENSACAG00000015560) ENSACAG00000038725 ##21 TUBA1A (ENSACAG00000044170) ##21 ENSACAG00000038621 ##22 PRPH (ENSACAG00000015695) C1QL4 (ENSACAG00000041424) ENSACAG00000037132 DNAJC22 (ENSACAG00000015798) SPATS2 (ENSACAG00000002690) KCNH3 (ENSACAG00000002637) MCRS1 (ENSACAG00000010308) ITGA7 (ENSACAG00000010030) bloc1s1 (ENSACAG00000037112) RDH5 (ENSACAG00000009989) CD63 (ENSACAG00000009957) ENSACAG00000041198 ZNF207 (ENSACAG00000009864) C17orf75 (ENSACAG00000009831) RHBDL3 (ENSACAG00000009768) Elapidae ANCESTRAL SPECIES 2 ENSGT00940000157144 ENSGT00730000111107 ENSGT00940000158593 ENSGT00390000016940.c.a ENSGT00940000155637 ENSGT00940000161052 ENSGT00390000002944 #19 ENSGT00940000178340 ENSGT00950000183178.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00940000154457.b.cb ##22 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000159891.k ENSGT00390000002689 ENSGT00940000161168.p ENSGT00940000161168.o ENSGT00940000156832 ENSGT00730000111057 ENSGT00390000005481 ENSGT00940000158838 ENSGT00940000155641 Indian cobra MODERN SPECIES 1 CDK2 (ENSNNAG00000001556) ENSNNAG00000001599 #20 DGKA (ENSNNAG00000001620) PYM1 (ENSNNAG00000001643) MMP19 (ENSNNAG00000001659) ENSNNAG00000001676 ENSNNAG00000001685 DNAJC14 (ENSNNAG00000001700) GDF11 (ENSNNAG00000001718) SARNP (ENSNNAG00000001737) #19 ORMDL2 (ENSNNAG00000001769) RHEBL1 (ENSNNAG00000001965) ENSNNAG00000002019 LMBR1L (ENSNNAG00000002031) TUBA1C (ENSNNAG00000002053) ##21 ENSNNAG00000002086 ##22 ENSNNAG00000002114 ##22 PRPH (ENSNNAG00000002128) C1QL4 (ENSNNAG00000002150) DNAJC22 (ENSNNAG00000002160) SPATS2 (ENSNNAG00000002172) KCNH3 (ENSNNAG00000002194) MCRS1 (ENSNNAG00000002216) ITGA7 (ENSNNAG00000002356) BLOC1S1 (ENSNNAG00000002828) ENSNNAG00000002832 ENSNNAG00000002835 CD63 (ENSNNAG00000002841) ZNF207 (ENSNNAG00000002850) C17orf75 (ENSNNAG00000002864) RHBDL3 (ENSNNAG00000002873) Mammalia ANCESTRAL SPECIES 82 ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00940000154457.b ##22 ENSGT00950000182825.A.a.b.a.b.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 Theria ANCESTRAL SPECIES 2 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.b.b ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00940000154457.b ##22 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b ENSGT00940000160612.d Marsupialia ANCESTRAL SPECIES 24 ENSGT00950000182837.b.a ENSGT00940000155606.b ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00950000182825.A.a.b.a.b.a.a.b #21 ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a.i #15 ENSGT00530000063607.a #16 Opossum MODERN SPECIES 5 PTPDC1 (ENSMODG00000008716) BARX1 (ENSMODG00000008720) PHF2 (ENSMODG00000008768) FAM120A (ENSMODG00000008789) WNK2 (ENSMODG00000008832) NINJ1 (ENSMODG00000008842) XYLB (ENSMODG00000008877) ACVR2B (ENSMODG00000008889) ENSMODG00000008902 VOPP1 (ENSMODG00000029263) LANCL2 (ENSMODG00000008968) EGFR (ENSMODG00000009033) ENSMODG00000009039 SEC61G (ENSMODG00000037009) VSTM2A (ENSMODG00000009103) ENSMODG00000009113 ##22 ENSMODG00000029195 ENSMODG00000009148 ENSMODG00000051593 ENSMODG00000009205 GRB10 (ENSMODG00000009212) ENSMODG00000037779 DDC (ENSMODG00000009255) FIGNL1 (ENSMODG00000024147) ENSMODG00000044243 IKZF1 (ENSMODG00000009274) SPATA48 (ENSMODG00000028255) ZPBP (ENSMODG00000009302) VWC2 (ENSMODG00000046131) ENSMODG00000009325 ENSMODG00000024142 Marsupialia_b ANCESTRAL SPECIES 12 ENSGT00950000182837.b.a ENSGT00940000155606.b ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a.i ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00950000182825.A.a.b.a.b.a.a.b #21 ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a.i #15 ENSGT00530000063607.a.g #16 Tasmanian devil MODERN SPECIES 4 ENSSHAG00000007370 ENSSHAG00000007601 ENSSHAG00000028151 DDX23 (ENSSHAG00000006590) CCDC65 (ENSSHAG00000023185) ARF3 (ENSSHAG00000029764) ENSSHAG00000030963 WNT10B (ENSSHAG00000002602) WNT1 (ENSSHAG00000001436) ENSSHAG00000003208 PRKAG1 (ENSSHAG00000003385) DHH (ENSSHAG00000027357) LMBR1L (ENSSHAG00000005343) TUBA1A (ENSSHAG00000025605) ##21 ENSSHAG00000021106 ##21 ENSSHAG00000013379 ##22 PRPH (ENSSHAG00000005303) ENSSHAG00000005623 C1QL4 (ENSSHAG00000005722) SPATS2 (ENSSHAG00000007068) KCNH3 (ENSSHAG00000008412) ENSSHAG00000009120 MCRS1 (ENSSHAG00000008687) PRPF40B (ENSSHAG00000009400) FMNL3 (ENSSHAG00000009503) ENSSHAG00000023527 #15 NCKAP5L (ENSSHAG00000010610) #16 BCDIN3D (ENSSHAG00000011007) FAIM2 (ENSSHAG00000031408) AQP2 (ENSSHAG00000026739) AQP5 (ENSSHAG00000003796) Diprotodontia ANCESTRAL SPECIES 29 ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a.i ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00950000182825.A.a.b.a.b.a.a.b #21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a.i #15 ENSGT00530000063607.a.g #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b ENSGT00940000160612.d Diprotodontia_a ANCESTRAL SPECIES 29 ENSGT00940000155606.b ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a.i ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00950000182825.A.a.b.a.b.a.a.b #21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a.i #15 ENSGT00530000063607.a.g #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b ENSGT00940000160612.d koala MODERN SPECIES 165 ENSPCIG00000033054 ENSPCIG00000030623 ARF3 (ENSPCIG00000036692) WNT10B (ENSPCIG00000027685) WNT1 (ENSPCIG00000035861) ENSPCIG00000027681 PRKAG1 (ENSPCIG00000027439) DHH (ENSPCIG00000027437) LMBR1L (ENSPCIG00000027436) TUBA1B (ENSPCIG00000027434) ##21 ENSPCIG00000007466 ##22 PRPH (ENSPCIG00000027432) ENSPCIG00000027431 C1QL4 (ENSPCIG00000027430) DNAJC22 (ENSPCIG00000027429) SPATS2 (ENSPCIG00000009586) KCNH3 (ENSPCIG00000037224) MCRS1 (ENSPCIG00000009248) ENSPCIG00000026835 PRPF40B (ENSPCIG00000026834) FMNL3 (ENSPCIG00000026832) ENSPCIG00000026826 #15 NCKAP5L (ENSPCIG00000026823) #16 BCDIN3D (ENSPCIG00000026825) FAIM2 (ENSPCIG00000026819) ENSPCIG00000007733 Eutheria ANCESTRAL SPECIES 1 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.b.b ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00940000154457.b ##22 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b ENSGT00940000160612.d Atlantogenata ANCESTRAL SPECIES 33 ENSGT00950000182837.b.a ENSGT00940000155606.b ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b ENSGT00940000160612.d Afrotheria ANCESTRAL SPECIES 25 ENSGT00950000182837.b.a ENSGT00940000155606.b ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00940000162478 ENSGT00550000075038 ENSGT00390000017837.a ENSGT00940000156993 ENSGT00940000160739 ENSGT00390000002808.a ENSGT00390000002808.b ENSGT00940000156292 ENSGT00940000163904 ENSGT00390000006879 ENSGT00940000156497 ENSGT00950000182860.a.a.a Tenrec DUPLICATION Tenrec MODERN SPECIES 16660 ENSETEG00000004967 ##22 Tenrec MODERN SPECIES 6051 ENSETEG00000000976 ##22 Afrotheria_a ANCESTRAL SPECIES 24 ENSGT00950000182837.b.a ENSGT00940000155606.b ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00940000162478 ENSGT00550000075038 ENSGT00390000017837.a ENSGT00940000156993 ENSGT00940000160739 ENSGT00390000002808.a ENSGT00390000002808.b ENSGT00940000156292 ENSGT00940000163904 ENSGT00390000006879 ENSGT00940000156497 ENSGT00950000182860.a.a.a Hyrax MODERN SPECIES 5108 ENSPCAG00000009131 ##22 Elephant MODERN SPECIES 196 CACNB3 (ENSLAFG00000014224) DDX23 (ENSLAFG00000014227) RND1 (ENSLAFG00000010202) CCDC65 (ENSLAFG00000004200) FKBP11 (ENSLAFG00000004202) ARF3 (ENSLAFG00000004207) WNT10B (ENSLAFG00000004210) WNT1 (ENSLAFG00000004211) DDN (ENSLAFG00000022385) PRKAG1 (ENSLAFG00000005040) KMT2D (ENSLAFG00000009989) RHEBL1 (ENSLAFG00000010008) DHH (ENSLAFG00000010011) LMBR1L (ENSLAFG00000010017) TUBA1B (ENSLAFG00000010021) ##21 ENSLAFG00000029073 ##22 PRPH (ENSLAFG00000003951) TROAP (ENSLAFG00000017503) C1QL4 (ENSLAFG00000017515) DNAJC22 (ENSLAFG00000022394) SPATS2 (ENSLAFG00000004315) KCNH3 (ENSLAFG00000021991) MCRS1 (ENSLAFG00000003199) FAM186B (ENSLAFG00000014695) PRPF40B (ENSLAFG00000014700) FMNL3 (ENSLAFG00000014702) TMBIM6 (ENSLAFG00000014715) #15 ENSLAFG00000014722 NCKAP5L (ENSLAFG00000014723) #16 BCDIN3D (ENSLAFG00000018388) FAIM2 (ENSLAFG00000016014) Boreoeutheria ANCESTRAL SPECIES 6 ENSGT00560000078683 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00940000154457.b ##22 ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b.b ##21 ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00950000185831 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b Euarchontoglires ANCESTRAL SPECIES 6 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00560000078683 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.b.b ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00950000185831 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b Primates ANCESTRAL SPECIES 6 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00560000078683 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.b.b ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b ENSGT00940000160612.d Strepsirrhini ANCESTRAL SPECIES 3 ENSGT00940000155606.b ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b ENSGT00940000160612.d Lemuriformes ANCESTRAL SPECIES 1 ENSGT00940000155606.b ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b ENSGT00940000160612.d Lemuriformes_a ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Coquerels sifaka MODERN SPECIES 1037 ENSPCOG00000025639 KEL (ENSPCOG00000013311) LLCFC1 (ENSPCOG00000014738) TRPV5 (ENSPCOG00000016425) TRPV6 (ENSPCOG00000007013) EPHB6 (ENSPCOG00000018084) ENSPCOG00000027900 ENSPCOG00000006802 ENSPCOG00000025257 ENSPCOG00000018967 PRSS58 (ENSPCOG00000015264) ENSPCOG00000026026 ENSPCOG00000023106 ##22 PIK3C3 (ENSPCOG00000026139) RIT2 (ENSPCOG00000022706) Mouse lemur MODERN SPECIES 29 DDX23 (ENSMICG00000017541) RND1 (ENSMICG00000034995) FKBP11 (ENSMICG00000017545) CCDC65 (ENSMICG00000029612) ARF3 (ENSMICG00000043617) WNT10B (ENSMICG00000011017) WNT1 (ENSMICG00000045219) DDN (ENSMICG00000032556) PRKAG1 (ENSMICG00000035239) KMT2D (ENSMICG00000017547) RHEBL1 (ENSMICG00000017548) DHH (ENSMICG00000017549) LMBR1L (ENSMICG00000017550) TUBA1B (ENSMICG00000046786) ##21 TUBA1A (ENSMICG00000031961) ##21 ENSMICG00000036184 ##22 PRPH (ENSMICG00000016388) TROAP (ENSMICG00000016409) C1QL4 (ENSMICG00000028110) ENSMICG00000015512 SPATS2 (ENSMICG00000005156) KCNH3 (ENSMICG00000042125) MCRS1 (ENSMICG00000005176) FAM186B (ENSMICG00000027100) PRPF40B (ENSMICG00000005196) FMNL3 (ENSMICG00000005219) ENSMICG00000026577 #15 NCKAP5L (ENSMICG00000005160) #16 BCDIN3D (ENSMICG00000031908) FAIM2 (ENSMICG00000015588) AQP2 (ENSMICG00000036745) Haplorrhini ANCESTRAL SPECIES 3 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00560000078683 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.b.b ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b ENSGT00940000160612.d Simiiformes ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Catarrhini ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Hominoidea ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Gibbon MODERN SPECIES 23 DDX23 (ENSNLEG00000017864) RND1 (ENSNLEG00000028550) FKBP11 (ENSNLEG00000017862) CCDC65 (ENSNLEG00000017860) ENSNLEG00000030380 ENSNLEG00000030793 WNT1 (ENSNLEG00000017855) DDN (ENSNLEG00000017854) PRKAG1 (ENSNLEG00000017850) KMT2D (ENSNLEG00000017849) RHEBL1 (ENSNLEG00000017847) DHH (ENSNLEG00000017846) LMBR1L (ENSNLEG00000017843) TUBA1A (ENSNLEG00000032990) ##21 ENSNLEG00000017835 ##22 ENSNLEG00000028012 ##22 PRPH (ENSNLEG00000017833) TROAP (ENSNLEG00000017830) DNAJC22 (ENSNLEG00000017829) SPATS2 (ENSNLEG00000017828) KCNH3 (ENSNLEG00000017827) MCRS1 (ENSNLEG00000017826) ENSNLEG00000018544 ENSNLEG00000033425 ENSNLEG00000017824 ENSNLEG00000026755 FMNL3 (ENSNLEG00000017822) ENSNLEG00000017820 #15 NCKAP5L (ENSNLEG00000017819) #16 BCDIN3D (ENSNLEG00000017818) ENSNLEG00000029950 Cercopithecidae ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Cercopithecinae ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Vervet Monkey MODERN SPECIES 1 DAPL1 (ENSCSAG00000015900) PKP4 (ENSCSAG00000015907) ENSCSAG00000018647 CCDC148 (ENSCSAG00000015915) UPP2 (ENSCSAG00000015921) ACVR1 (ENSCSAG00000015925) ACVR1C (ENSCSAG00000015930) CYTIP (ENSCSAG00000015933) ERMN (ENSCSAG00000015935) GALNT5 (ENSCSAG00000015950) GPD2 (ENSCSAG00000015958) NR4A2 (ENSCSAG00000015964) KCNJ3 (ENSCSAG00000015970) GALNT13 (ENSCSAG00000015977) RPRM (ENSCSAG00000018646) ENSCSAG00000015984 ##22 ARL6IP6 (ENSCSAG00000015990) PRPF40A (ENSCSAG00000016002) ENSCSAG00000016011 STAM2 (ENSCSAG00000016021) CACNB4 (ENSCSAG00000016028) NEB (ENSCSAG00000016065) RIF1 (ENSCSAG00000016089) TNFAIP6 (ENSCSAG00000016095) NMI (ENSCSAG00000016102) RBM43 (ENSCSAG00000016105) RND3 (ENSCSAG00000016117) ENSCSAG00000016123 MMADHC (ENSCSAG00000016144) LYPD6 (ENSCSAG00000016149) LYPD6B (ENSCSAG00000016151) Cercopithecinae_a ANCESTRAL SPECIES 16 ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.b ##22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00940000163812 ENSGT00910000146920 ENSGT00940000157018 ENSGT01080000257504 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 Cercopithecinae_b ANCESTRAL SPECIES 10 ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.b ##22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00940000163812 ENSGT00910000146920 ENSGT00940000157018 ENSGT01080000257504 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 Cercopithecinae_d ANCESTRAL SPECIES ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.b ##22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00940000163812 ENSGT00910000146920 ENSGT00940000157018 ENSGT01080000257504 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 Drill MODERN SPECIES 1431 FEV (ENSMLEG00000035968) CRYBA2 (ENSMLEG00000011664) CFAP65 (ENSMLEG00000035941) IHH (ENSMLEG00000007404) NHEJ1 (ENSMLEG00000029105) SLC23A3 (ENSMLEG00000035579) CNPPD1 (ENSMLEG00000037422) RETREG2 (ENSMLEG00000043066) ZFAND2B (ENSMLEG00000036623) ABCB6 (ENSMLEG00000040019) ATG9A (ENSMLEG00000038465) ANKZF1 (ENSMLEG00000016483) GLB1L (ENSMLEG00000025721) STK16 (ENSMLEG00000030990) TUBA4A (ENSMLEG00000029671) ENSMLEG00000039978 ##22 DNAJB2 (ENSMLEG00000018494) PTPRN (ENSMLEG00000032604) RESP18 (ENSMLEG00000035640) DNPEP (ENSMLEG00000009998) DES (ENSMLEG00000033067) ENSMLEG00000029786 SPEGNB (ENSMLEG00000034828) ENSMLEG00000021941 GMPPA (ENSMLEG00000038937) ENSMLEG00000037889 ASIC4 (ENSMLEG00000037469) CHPF (ENSMLEG00000040792) TMEM198 (ENSMLEG00000031360) OBSL1 (ENSMLEG00000019658) INHA (ENSMLEG00000043274) Sooty mangabey MODERN SPECIES 663 FEV (ENSCATG00000042120) CRYBA2 (ENSCATG00000036307) CFAP65 (ENSCATG00000044214) IHH (ENSCATG00000011857) NHEJ1 (ENSCATG00000031316) SLC23A3 (ENSCATG00000032304) CNPPD1 (ENSCATG00000036265) ENSCATG00000038425 ZFAND2B (ENSCATG00000035298) ABCB6 (ENSCATG00000044148) ATG9A (ENSCATG00000037370) ANKZF1 (ENSCATG00000039880) GLB1L (ENSCATG00000039765) ENSCATG00000037306 TUBA4A (ENSCATG00000033332) ENSCATG00000040322 ##22 DNAJB2 (ENSCATG00000045317) PTPRN (ENSCATG00000038450) RESP18 (ENSCATG00000020071) DNPEP (ENSCATG00000025745) DES (ENSCATG00000029792) SPEG (ENSCATG00000033367) ENSCATG00000022992 SPEGNB (ENSCATG00000040074) ENSCATG00000038555 GMPPA (ENSCATG00000044515) ASIC4 (ENSCATG00000034900) CHPF (ENSCATG00000039674) TMEM198 (ENSCATG00000023632) OBSL1 (ENSCATG00000042212) INHA (ENSCATG00000040688) Macaca ANCESTRAL SPECIES 15 ENSGT00940000161562 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.b ##22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00940000163812 ENSGT00940000157018 ENSGT01080000257504 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 ENSGT00940000158471 Pig-tailed macaque MODERN SPECIES 570 FEV (ENSMNEG00000044702) CRYBA2 (ENSMNEG00000035350) CFAP65 (ENSMNEG00000037521) IHH (ENSMNEG00000042582) NHEJ1 (ENSMNEG00000030294) SLC23A3 (ENSMNEG00000042866) CNPPD1 (ENSMNEG00000040784) RETREG2 (ENSMNEG00000042950) ZFAND2B (ENSMNEG00000041938) ABCB6 (ENSMNEG00000040783) ATG9A (ENSMNEG00000030084) ANKZF1 (ENSMNEG00000043308) GLB1L (ENSMNEG00000032580) STK16 (ENSMNEG00000044303) TUBA4A (ENSMNEG00000039170) ENSMNEG00000027851 ##22 DNAJB2 (ENSMNEG00000038942) PTPRN (ENSMNEG00000041709) RESP18 (ENSMNEG00000042702) DNPEP (ENSMNEG00000044398) DES (ENSMNEG00000038713) SPEG (ENSMNEG00000040850) SPEGNB (ENSMNEG00000042513) GMPPA (ENSMNEG00000004595) ENSMNEG00000029271 ASIC4 (ENSMNEG00000030896) CHPF (ENSMNEG00000033383) OBSL1 (ENSMNEG00000031945) INHA (ENSMNEG00000042611) STK11IP (ENSMNEG00000030631) SLC4A3 (ENSMNEG00000043905) Platyrrhini ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Cebidae ANCESTRAL SPECIES 2 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00560000078683 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.b.b ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.m ##21 ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536.e ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b ENSGT00940000160612.d Cebidae_a ANCESTRAL SPECIES 5 ENSGT00950000182960.a.a.a.a.b.rb.n.a.a ENSGT00940000159521 ENSGT00560000078683 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.b.b ##21 ENSGT00940000154457.a.a #22 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.m ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536.e ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b ENSGT00940000160612.d Capuchin MODERN SPECIES 181 CCDC65 (ENSCCAG00000036201) ENSCCAG00000023694 FKBP11 (ENSCCAG00000032118) ARF3 (ENSCCAG00000037739) ENSCCAG00000033541 WNT10B (ENSCCAG00000037600) WNT1 (ENSCCAG00000031046) DDN (ENSCCAG00000030806) PRKAG1 (ENSCCAG00000017317) KMT2D (ENSCCAG00000034677) RHEBL1 (ENSCCAG00000021754) DHH (ENSCCAG00000008770) LMBR1L (ENSCCAG00000034639) ENSCCAG00000036239 ##21 ENSCCAG00000032130 ##21 ENSCCAG00000032756 ##22 PRPH (ENSCCAG00000033705) TROAP (ENSCCAG00000036621) C1QL4 (ENSCCAG00000026057) DNAJC22 (ENSCCAG00000004115) SPATS2 (ENSCCAG00000000044) KCNH3 (ENSCCAG00000029024) MCRS1 (ENSCCAG00000035719) FAM186B (ENSCCAG00000035626) ENSCCAG00000005419 PRPF40B (ENSCCAG00000030147) FMNL3 (ENSCCAG00000016612) TMBIM6 (ENSCCAG00000035742) #15 NCKAP5L (ENSCCAG00000031139) #16 BCDIN3D (ENSCCAG00000029244) FAIM2 (ENSCCAG00000035820) Bolivian squirrel monkey MODERN SPECIES 153 ENSSBOG00000029649 ENSSBOG00000034756 FKBP11 (ENSSBOG00000023963) ENSSBOG00000018490 ARF3 (ENSSBOG00000021606) WNT10B (ENSSBOG00000016250) WNT1 (ENSSBOG00000023811) DDN (ENSSBOG00000021863) PRKAG1 (ENSSBOG00000021677) KMT2D (ENSSBOG00000035169) RHEBL1 (ENSSBOG00000035130) DHH (ENSSBOG00000036092) LMBR1L (ENSSBOG00000023418) ENSSBOG00000028238 #22 TUBA1B (ENSSBOG00000022158) ##21 ENSSBOG00000005771 ##22 PRPH (ENSSBOG00000032145) TROAP (ENSSBOG00000034178) C1QL4 (ENSSBOG00000033432) DNAJC22 (ENSSBOG00000033980) SPATS2 (ENSSBOG00000023909) KCNH3 (ENSSBOG00000027569) ENSSBOG00000036027 FAM186B (ENSSBOG00000016980) ENSSBOG00000027018 PRPF40B (ENSSBOG00000025670) FMNL3 (ENSSBOG00000026511) TMBIM6 (ENSSBOG00000024527) #15 NCKAP5L (ENSSBOG00000028145) #16 BCDIN3D (ENSSBOG00000035511) FAIM2 (ENSSBOG00000020121) Euarchontoglires_A ANCESTRAL SPECIES 5 ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.b.b ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00950000185831 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b Glires ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Lagomorpha ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Rabbit MODERN SPECIES 9 ENSOCUG00000037086 SH3PXD2A (ENSOCUG00000013769) NEURL1 (ENSOCUG00000013760) CALHM3 (ENSOCUG00000025668) CALHM1 (ENSOCUG00000027986) CALHM2 (ENSOCUG00000006336) PDCD11 (ENSOCUG00000006312) ENSOCUG00000033131 TAF5 (ENSOCUG00000006303) PCGF6 (ENSOCUG00000012441) INA (ENSOCUG00000004969) ENSOCUG00000009107 CNNM2 (ENSOCUG00000009098) AS3MT (ENSOCUG00000000626) ENSOCUG00000037788 ENSOCUG00000023839 ##22 CYP17A1 (ENSOCUG00000017790) WBP1L (ENSOCUG00000021890) SFXN2 (ENSOCUG00000025541) ARL3 (ENSOCUG00000005792) TRIM8 (ENSOCUG00000005786) SUFU (ENSOCUG00000005781) ACTR1A (ENSOCUG00000005779) MFSD13A (ENSOCUG00000005770) FBXL15 (ENSOCUG00000005764) CUEDC2 (ENSOCUG00000023995) PSD (ENSOCUG00000005751) NFKB2 (ENSOCUG00000005735) GBF1 (ENSOCUG00000005714) PITX3 (ENSOCUG00000016065) ELOVL3 (ENSOCUG00000016071) Rodentia ANCESTRAL SPECIES 5 ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.b.b ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00950000185831 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b Rodentia_B ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Myomorpha ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Muroidea ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Muroidea_A ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Cricetidae ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Cricetidae_B ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Prairie vole MODERN SPECIES 58 ENSMOCG00000016897 ##22 Cricetinae ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Chinese hamster chok1gshd MODERN SPECIES 401 Ifitm3 (ENSCGRG00001019525) ENSCGRG00001016513 Ifitm5 (ENSCGRG00001014047) Pgghg (ENSCGRG00001022330) Nlrp6 (ENSCGRG00001001672) Cox8b (ENSCGRG00001022467) Psmd13 (ENSCGRG00001010424) Sirt3 (ENSCGRG00001023616) Ric8a (ENSCGRG00001016641) ENSCGRG00001001302 Odf3 (ENSCGRG00001010633) Scgb1c1 (ENSCGRG00001005276) Urah (ENSCGRG00001021420) Syce1 (ENSCGRG00001006345) Cyp2e1 (ENSCGRG00001016138) ENSCGRG00001008271 ##22 ENSCGRG00001009797 ENSCGRG00001009909 ENSCGRG00001010703 ENSCGRG00001010224 ENSCGRG00001001034 ENSCGRG00001021914 Scart2 (ENSCGRG00001020625) Or6b13 (ENSCGRG00001005020) ENSCGRG00001002649 Or6f2 (ENSCGRG00001003224) Or6ae1 (ENSCGRG00001011811) Sprn (ENSCGRG00001000836) Paox (ENSCGRG00001017950) Echs1 (ENSCGRG00001001970) Fuom (ENSCGRG00001017273) Rodentia_A ANCESTRAL SPECIES 4 ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.b.b.b ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00950000185831 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b Sciuridae ANCESTRAL SPECIES 15 ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.b.b.b ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00950000185831 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b Marmotini ANCESTRAL SPECIES 19 ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.b.b.b ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00950000185831 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b Marmotini_b ANCESTRAL SPECIES 11 ENSGT00940000155606.b ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.b.b.b ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b ENSGT00940000160612.d Squirrel MODERN SPECIES 112 DDX23 (ENSSTOG00000004219) RND1 (ENSSTOG00000004257) CCDC65 (ENSSTOG00000004267) FKBP11 (ENSSTOG00000023089) ARF3 (ENSSTOG00000004295) WNT10B (ENSSTOG00000004303) WNT1 (ENSSTOG00000003902) DDN (ENSSTOG00000028408) PRKAG1 (ENSSTOG00000014648) KMT2D (ENSSTOG00000003904) RHEBL1 (ENSSTOG00000003967) DHH (ENSSTOG00000000186) LMBR1L (ENSSTOG00000008752) TUBA1A (ENSSTOG00000033698) ##21 TUBA1B (ENSSTOG00000021170) ##21 ENSSTOG00000020227 ##22 PRPH (ENSSTOG00000000282) ENSSTOG00000004941 C1QL4 (ENSSTOG00000024334) DNAJC22 (ENSSTOG00000029066) SPATS2 (ENSSTOG00000009081) KCNH3 (ENSSTOG00000001084) MCRS1 (ENSSTOG00000001093) FAM186B (ENSSTOG00000026279) PRPF40B (ENSSTOG00000001132) FMNL3 (ENSSTOG00000001149) TMBIM6 (ENSSTOG00000001165) #15 NCKAP5L (ENSSTOG00000022659) #16 BCDIN3D (ENSSTOG00000021275) FAIM2 (ENSSTOG00000027904) AQP2 (ENSSTOG00000011259) Hystricomorpha ANCESTRAL SPECIES 9 ENSGT00940000155606.b ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b ENSGT00940000160612.d Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES 14 ENSHGLG00000033097 RNF32 (ENSHGLG00000037782) LMBR1 (ENSHGLG00000010444) NOM1 (ENSHGLG00000007392) MNX1 (ENSHGLG00000006212) UBE3C (ENSHGLG00000008254) DNAJB6 (ENSHGLG00000018860) ENSHGLG00000050124 ENSHGLG00000050437 ENSHGLG00000036053 NCAPG2 (ENSHGLG00000005951) ESYT2 (ENSHGLG00000004302) DYNC2I1 (ENSHGLG00000006228) ENSHGLG00000019103 ENSHGLG00000042205 ENSHGLG00000018716 ##22 ENSHGLG00000003449 XRCC2 (ENSHGLG00000035399) ENSHGLG00000044948 ENSHGLG00000036262 ENSHGLG00000018334 GALNT11 (ENSHGLG00000010004) GALNTL5 (ENSHGLG00000003942) ENSHGLG00000038611 RHEB (ENSHGLG00000042643) ENSHGLG00000034995 SMARCD3 (ENSHGLG00000003237) ENSHGLG00000041150 ENSHGLG00000038267 ABCF2 (ENSHGLG00000005286) ASB10 (ENSHGLG00000005594) Naked mole-rat female MODERN SPECIES 4 CH25H (ENSHGLG00000048712) ENSHGLG00000034458 ENSHGLG00000033440 FAS (ENSHGLG00000050483) ACTA2 (ENSHGLG00000002950) STAMBPL1 (ENSHGLG00000019158) ANKRD22 (ENSHGLG00000012828) LIPM (ENSHGLG00000006060) LIPN (ENSHGLG00000004609) LIPK (ENSHGLG00000044960) LIPF (ENSHGLG00000003846) RNLS (ENSHGLG00000044945) ENSHGLG00000008649 ENSHGLG00000035387 ATAD1 (ENSHGLG00000042263) ENSHGLG00000032735 ##22 PAPSS2 (ENSHGLG00000018676) ENSHGLG00000047821 ENSHGLG00000018859 ENSHGLG00000046147 ENSHGLG00000004068 ENSHGLG00000018994 ENSHGLG00000019589 ENSHGLG00000018465 ENSHGLG00000033052 ENSHGLG00000008955 ENSHGLG00000036537 CSTF2T (ENSHGLG00000015478) ENSHGLG00000021086 ENSHGLG00000007097 DKK1 (ENSHGLG00000003778) Hystricomorpha_a ANCESTRAL SPECIES 7 ENSGT00950000182837.b.a ENSGT00940000155606.b ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b ENSGT00940000160612.d Hystricomorpha_b ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Degu MODERN SPECIES 315 ENSODEG00000018797 ENSODEG00000001731 ##22 ENSODEG00000000991 PLCXD1 (ENSODEG00000001034) GTPBP6 (ENSODEG00000001052) ENSODEG00000001155 Guinea pig MODERN SPECIES 9 CACNB3 (ENSCPOG00000003277) DDX23 (ENSCPOG00000003278) RND1 (ENSCPOG00000003220) CCDC65 (ENSCPOG00000003221) FKBP11 (ENSCPOG00000031801) ARF3 (ENSCPOG00000040787) WNT10B (ENSCPOG00000035034) WNT1 (ENSCPOG00000024490) DDN (ENSCPOG00000002960) PRKAG1 (ENSCPOG00000002966) KMT2D (ENSCPOG00000002973) RHEBL1 (ENSCPOG00000002998) DHH (ENSCPOG00000002257) LMBR1L (ENSCPOG00000002999) TUBA1B (ENSCPOG00000039484) ##21 ENSCPOG00000031519 ##22 PRPH (ENSCPOG00000014881) TROAP (ENSCPOG00000014679) C1QL4 (ENSCPOG00000020682) SPATS2 (ENSCPOG00000009858) KCNH3 (ENSCPOG00000011165) MCRS1 (ENSCPOG00000011172) FAM186B (ENSCPOG00000033003) PRPF40B (ENSCPOG00000001883) FMNL3 (ENSCPOG00000001888) TMBIM6 (ENSCPOG00000002195) #15 NCKAP5L (ENSCPOG00000013063) #16 BCDIN3D (ENSCPOG00000039774) FAIM2 (ENSCPOG00000037651) AQP2 (ENSCPOG00000022039) AQP5 (ENSCPOG00000027598) Laurasiatheria ANCESTRAL SPECIES 6 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00560000078683 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.b.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00950000185831 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b Laurasiatheria_a ANCESTRAL SPECIES 6 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00560000078683 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a.t ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.b.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00950000185831 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b Laurasiatheria_b ANCESTRAL SPECIES 6 ENSGT00940000155606.b ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a.t ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00950000185831 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b Laurasiatheria_c ANCESTRAL SPECIES 5 ENSGT00940000155606.b ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a.t ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b ENSGT00940000160612.d Chiroptera ANCESTRAL SPECIES 4 ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a.t ENSGT00950000183019.f.b.a.s.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b ENSGT00940000160612.d Megabat MODERN SPECIES 907 CCDC65 (ENSPVAG00000004624) FKBP11 (ENSPVAG00000004625) ARF3 (ENSPVAG00000004626) WNT10B (ENSPVAG00000004628) WNT1 (ENSPVAG00000004629) PRKAG1 (ENSPVAG00000004631) KMT2D (ENSPVAG00000004632) RHEBL1 (ENSPVAG00000004637) DHH (ENSPVAG00000004638) LMBR1L (ENSPVAG00000004640) ENSPVAG00000004642 ##22 TUBA1A (ENSPVAG00000004645) ##21 ENSPVAG00000004646 ##22 PRPH (ENSPVAG00000004647) TROAP (ENSPVAG00000004648) C1QL4 (ENSPVAG00000004649) DNAJC22 (ENSPVAG00000004650) Microchiroptera ANCESTRAL SPECIES 2 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a.s.a ENSGT00950000183019.f.b.a.t ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b ENSGT00940000160612.d Greater horseshoe bat MODERN SPECIES 1 CACNB3 (ENSRFEG00010008761) DDX23 (ENSRFEG00010009126) RND1 (ENSRFEG00010009261) ENSRFEG00010009293 CCDC65 (ENSRFEG00010009326) FKBP11 (ENSRFEG00010009367) WNT10B (ENSRFEG00010009503) WNT1 (ENSRFEG00010009601) DDN (ENSRFEG00010009634) ENSRFEG00010009659 ENSRFEG00010009959 ENSRFEG00010010186 DHH (ENSRFEG00010010213) LMBR1L (ENSRFEG00010010270) TUBA1B (ENSRFEG00010010426) ##21 ENSRFEG00010010573 ##22 PRPH (ENSRFEG00010010768) TROAP (ENSRFEG00010010867) C1QL4 (ENSRFEG00010011031) DNAJC22 (ENSRFEG00010011083) SPATS2 (ENSRFEG00010011118) ENSRFEG00010011174 KCNH3 (ENSRFEG00010011231) MCRS1 (ENSRFEG00010011491) FAM186B (ENSRFEG00010011681) PRPF40B (ENSRFEG00010011898) FMNL3 (ENSRFEG00010012912) TMBIM6 (ENSRFEG00010013031) #15 NCKAP5L (ENSRFEG00010013134) #16 BCDIN3D (ENSRFEG00010013189) FAIM2 (ENSRFEG00010013224) Microbat DUPLICATION Microbat MODERN SPECIES 952 KRIT1 (ENSMLUG00000017177) ANKIB1 (ENSMLUG00000011789) ENSMLUG00000028584 GATAD1 (ENSMLUG00000011820) PEX1 (ENSMLUG00000011828) RBM48 (ENSMLUG00000011863) ENSMLUG00000028906 FAM133B (ENSMLUG00000005933) CDK6 (ENSMLUG00000011872) ENSMLUG00000027335 ENSMLUG00000022770 SAMD9L (ENSMLUG00000017034) HEPACAM2 (ENSMLUG00000000672) VPS50 (ENSMLUG00000010632) CALCR (ENSMLUG00000006718) ENSMLUG00000023902 ##22 TFPI2 (ENSMLUG00000017498) ENSMLUG00000026472 ENSMLUG00000028366 COL1A2 (ENSMLUG00000015487) CASD1 (ENSMLUG00000016713) SGCE (ENSMLUG00000016724) PPP1R9A (ENSMLUG00000014166) PON1 (ENSMLUG00000014176) PON3 (ENSMLUG00000006984) PON2 (ENSMLUG00000006998) ASB4 (ENSMLUG00000007018) PDK4 (ENSMLUG00000007027) DYNC1I1 (ENSMLUG00000013664) SLC25A13 (ENSMLUG00000013686) SEM1 (ENSMLUG00000014208) Microbat MODERN SPECIES 1069 ENSMLUG00000024060 ##22 ENSMLUG00000010146 PTF1A (ENSMLUG00000010122) MSRB2 (ENSMLUG00000010112) ARMC3 (ENSMLUG00000001594) PIP4K2A (ENSMLUG00000016205) BMI1 (ENSMLUG00000001692) COMMD3 (ENSMLUG00000010985) DNAJC1 (ENSMLUG00000014913) ENSMLUG00000028742 MLLT10 (ENSMLUG00000014901) SKIDA1 (ENSMLUG00000005720) ENSMLUG00000004554 NEBL (ENSMLUG00000011932) Carnivora ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Caniformia ANCESTRAL SPECIES 19 ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a.t ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.a.b.h #21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00950000185831 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b Canidae ANCESTRAL SPECIES 8 ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a.t ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.a.b.h #21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b ENSGT00940000160612.d Canis_lupus ANCESTRAL SPECIES 14 ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a.t ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.a.b.h #21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b ENSGT00940000160612.d Dog MODERN SPECIES 19 CACNB3 (ENSCAFG00845023805) DDX23 (ENSCAFG00845023512) RND1 (ENSCAFG00845023432) CCDC65 (ENSCAFG00845023368) FKBP11 (ENSCAFG00845023275) ENSCAFG00845022913 WNT10B (ENSCAFG00845022647) WNT1 (ENSCAFG00845022557) DDN (ENSCAFG00845022517) PRKAG1 (ENSCAFG00845022388) KMT2D (ENSCAFG00845021787) RHEBL1 (ENSCAFG00845021547) DHH (ENSCAFG00845021487) LMBR1L (ENSCAFG00845021402) TUBA1B (ENSCAFG00845021145) ##21 ENSCAFG00845020819 ##22 PRPH (ENSCAFG00845020632) ENSCAFG00845020455 C1QL4 (ENSCAFG00845020396) DNAJC22 (ENSCAFG00845020366) SPATS2 (ENSCAFG00845020255) KCNH3 (ENSCAFG00845020050) MCRS1 (ENSCAFG00845019743) FAM186B (ENSCAFG00845019610) PRPF40B (ENSCAFG00845019354) FMNL3 (ENSCAFG00845019002) TMBIM6 (ENSCAFG00845018887) #15 NCKAP5L (ENSCAFG00845018746) #16 BCDIN3D (ENSCAFG00845018667) FAIM2 (ENSCAFG00845018479) AQP2 (ENSCAFG00845018399) Red fox MODERN SPECIES 32 CACNB3 (ENSVVUG00000019645) DDX23 (ENSVVUG00000019648) RND1 (ENSVVUG00000019659) CCDC65 (ENSVVUG00000019666) ENSVVUG00000019671 ARF3 (ENSVVUG00000019673) WNT10B (ENSVVUG00000019690) WNT1 (ENSVVUG00000019697) DDN (ENSVVUG00000019700) PRKAG1 (ENSVVUG00000019735) RHEBL1 (ENSVVUG00000020894) DHH (ENSVVUG00000020895) LMBR1L (ENSVVUG00000020897) ENSVVUG00000020900 ##21 ENSVVUG00000020903 ENSVVUG00000020906 ##22 PRPH (ENSVVUG00000020924) TROAP (ENSVVUG00000020927) C1QL4 (ENSVVUG00000020930) DNAJC22 (ENSVVUG00000020931) SPATS2 (ENSVVUG00000020935) KCNH3 (ENSVVUG00000020962) MCRS1 (ENSVVUG00000020978) FAM186B (ENSVVUG00000021058) PRPF40B (ENSVVUG00000021078) FMNL3 (ENSVVUG00000021863) TMBIM6 (ENSVVUG00000023288) #15 NCKAP5L (ENSVVUG00000023483) #16 BCDIN3D (ENSVVUG00000023486) FAIM2 (ENSVVUG00000023489) AQP2 (ENSVVUG00000023493) Caniformia_b ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Ursidae ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Giant Panda MODERN SPECIES 11 DDAH1 (ENSAMEG00000017246) ENSAMEG00000023476 CCN1 (ENSAMEG00000017235) ZNHIT6 (ENSAMEG00000017224) COL24A1 (ENSAMEG00000017218) ODF2L (ENSAMEG00000017198) CLCA2 (ENSAMEG00000017197) CLCA1 (ENSAMEG00000017170) CLCA4 (ENSAMEG00000017158) ENSAMEG00000015592 SH3GLB1 (ENSAMEG00000016222) SELENOF (ENSAMEG00000027639) HS2ST1 (ENSAMEG00000016204) ENSAMEG00000020192 LMO4 (ENSAMEG00000016200) ENSAMEG00000016734 ##22 PKN2 (ENSAMEG00000016188) GTF2B (ENSAMEG00000016176) KYAT3 (ENSAMEG00000016142) GBP1 (ENSAMEG00000016105) ENSAMEG00000009306 ENSAMEG00000028362 ENSAMEG00000000434 ENSAMEG00000009341 LRRC8B (ENSAMEG00000000485) LRRC8C (ENSAMEG00000000489) LRRC8D (ENSAMEG00000019318) ZNF326 (ENSAMEG00000000495) BARHL2 (ENSAMEG00000029067) ZNF644 (ENSAMEG00000008669) HFM1 (ENSAMEG00000000432) Artiodactyla ANCESTRAL SPECIES 6 ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00560000078683 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a.t ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00950000185831 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b Suina ANCESTRAL SPECIES 21 ENSGT00940000155606.b ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00560000078683 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a.t ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b Pig MODERN SPECIES 13 RND1 (ENSSSCG00000038562) CCDC65 (ENSSSCG00000000179) FKBP11 (ENSSSCG00000059895) ENSSSCG00000032202 ARF3 (ENSSSCG00000051954) WNT10B (ENSSSCG00000000182) WNT1 (ENSSSCG00000000183) DDN (ENSSSCG00000000184) PRKAG1 (ENSSSCG00000000185) ENSSSCG00000035856 ENSSSCG00000042640 RHEBL1 (ENSSSCG00000000186) DHH (ENSSSCG00000000188) LMBR1L (ENSSSCG00000000189) TUBA1B (ENSSSCG00000000190) ##21 ENSSSCG00000000194 ##22 TUBA1A (ENSSSCG00000061347) ##21 PRPH (ENSSSCG00000000195) TROAP (ENSSSCG00000023176) C1QL4 (ENSSSCG00000000197) DNAJC22 (ENSSSCG00000000198) SPATS2 (ENSSSCG00000000199) KCNH3 (ENSSSCG00000000203) MCRS1 (ENSSSCG00000000202) FAM186B (ENSSSCG00000000205) PRPF40B (ENSSSCG00000000204) FMNL3 (ENSSSCG00000025114) TMBIM6 (ENSSSCG00000029652) #15 NCKAP5L (ENSSSCG00000000209) #16 BCDIN3D (ENSSSCG00000040144) ENSSSCG00000000207 Artiodactyla_a ANCESTRAL SPECIES 5 ENSGT00940000155606.b ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a.t ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00950000185831 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b Artiodactyla_b ANCESTRAL SPECIES 5 ENSGT00940000155606.b ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a.t ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00950000185831 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b Pecora ANCESTRAL SPECIES 3 ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a.t ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00960000190898 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00950000185831 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b Percora_a ANCESTRAL SPECIES 3 ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a.t ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00960000190898 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00950000185831 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b Bovidae ANCESTRAL SPECIES 3 ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a.t ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00960000190898 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00950000185831 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a.g ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a.bb.b #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b Caprinae ANCESTRAL SPECIES ENSGT00940000155606.b ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a.t ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a.h.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a.bb.b #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b ENSGT00940000160612.d Goat DUPLICATION Goat MODERN SPECIES 24 RND1 (ENSCHIG00000026053) CCDC65 (ENSCHIG00000009627) FKBP11 (ENSCHIG00000015331) ARF3 (ENSCHIG00000019252) WNT10B (ENSCHIG00000010919) WNT1 (ENSCHIG00000018993) DDN (ENSCHIG00000009245) PRKAG1 (ENSCHIG00000020571) KMT2D (ENSCHIG00000015068) RHEBL1 (ENSCHIG00000016686) DHH (ENSCHIG00000009754) LMBR1L (ENSCHIG00000015579) TUBA1B (ENSCHIG00000018025) ##21 TUBA1A (ENSCHIG00000022988) ##21 ENSCHIG00000025067 ##22 ENSCHIG00000019237 ##22 PRPH (ENSCHIG00000011830) ENSCHIG00000027060 TROAP (ENSCHIG00000011079) C1QL4 (ENSCHIG00000012773) DNAJC22 (ENSCHIG00000021631) ENSCHIG00000026771 KCNH3 (ENSCHIG00000013580) MCRS1 (ENSCHIG00000019172) FAM186B (ENSCHIG00000024871) PRPF40B (ENSCHIG00000024014) FMNL3 (ENSCHIG00000015654) TMBIM6 (ENSCHIG00000001154) #15 NCKAP5L (ENSCHIG00000027024) #16 BCDIN3D (ENSCHIG00000014358) FAIM2 (ENSCHIG00000019021) Goat MODERN SPECIES 24 DDX23 (ENSCHIG00000018783) RND1 (ENSCHIG00000026053) CCDC65 (ENSCHIG00000009627) FKBP11 (ENSCHIG00000015331) ARF3 (ENSCHIG00000019252) WNT10B (ENSCHIG00000010919) WNT1 (ENSCHIG00000018993) DDN (ENSCHIG00000009245) PRKAG1 (ENSCHIG00000020571) KMT2D (ENSCHIG00000015068) RHEBL1 (ENSCHIG00000016686) DHH (ENSCHIG00000009754) LMBR1L (ENSCHIG00000015579) TUBA1B (ENSCHIG00000018025) ##21 TUBA1A (ENSCHIG00000022988) ##21 ENSCHIG00000025067 ##22 ENSCHIG00000019237 ##22 PRPH (ENSCHIG00000011830) ENSCHIG00000027060 TROAP (ENSCHIG00000011079) C1QL4 (ENSCHIG00000012773) DNAJC22 (ENSCHIG00000021631) ENSCHIG00000026771 KCNH3 (ENSCHIG00000013580) MCRS1 (ENSCHIG00000019172) FAM186B (ENSCHIG00000024871) PRPF40B (ENSCHIG00000024014) FMNL3 (ENSCHIG00000015654) TMBIM6 (ENSCHIG00000001154) #15 NCKAP5L (ENSCHIG00000027024) #16 BCDIN3D (ENSCHIG00000014358) Rambouillet Sheep MODERN SPECIES 19 RND1 (ENSOARG00020001495) CCDC65 (ENSOARG00020001481) FKBP11 (ENSOARG00020001464) ARF3 (ENSOARG00020001435) WNT10B (ENSOARG00020001413) WNT1 (ENSOARG00020001399) DDN (ENSOARG00020001388) PRKAG1 (ENSOARG00020001353) KMT2D (ENSOARG00020001142) RHEBL1 (ENSOARG00020001088) DHH (ENSOARG00020001078) LMBR1L (ENSOARG00020001056) ENSOARG00020001038 ##21 TUBA1A (ENSOARG00020000988) ##21 TUBA1C (ENSOARG00020000944) ##21 ENSOARG00020000929 ##22 PRPH (ENSOARG00020000909) TROAP (ENSOARG00020000841) C1QL4 (ENSOARG00020000814) DNAJC22 (ENSOARG00020000805) ENSOARG00020000793 KCNH3 (ENSOARG00020000757) MCRS1 (ENSOARG00020000707) FAM186B (ENSOARG00020000686) PRPF40B (ENSOARG00020000603) FMNL3 (ENSOARG00020000387) ENSOARG00020000307 #15 NCKAP5L (ENSOARG00020000181) #16 BCDIN3D (ENSOARG00020023998) FAIM2 (ENSOARG00020023956) AQP2 (ENSOARG00020023932) Yarkand deer MODERN SPECIES 521 ENSCHYG00000019025 ##22 Cetacea ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Odontoceti ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Odontoceti_a ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Odontoceti_b ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Monodontidae ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Narwhal MODERN SPECIES 309 ENSMMNG00015009397 ATP7A (ENSMMNG00015009419) ENSMMNG00015009432 PGK1 (ENSMMNG00015009442) TAF9B (ENSMMNG00015009451) RTL3 (ENSMMNG00015009461) LPAR4 (ENSMMNG00015009468) P2RY10 (ENSMMNG00015009475) ENSMMNG00015009482 ITM2A (ENSMMNG00015009496) ENSMMNG00015009510 TBX22 (ENSMMNG00015009523) ENSMMNG00015009536 TENT5D (ENSMMNG00015009540) BRWD3 (ENSMMNG00015009554) ENSMMNG00015009577 ##22 ENSMMNG00015009579 ENSMMNG00015009582 HMGN5 (ENSMMNG00015009591) ENSMMNG00015009599 SH3BGRL (ENSMMNG00015009604) ENSMMNG00015009610 ENSMMNG00015009619 ENSMMNG00015009625 RPS6KA6 (ENSMMNG00015009638) ENSMMNG00015009659 HDX (ENSMMNG00015009669) ENSMMNG00015009686 ENSMMNG00015009704 ENSMMNG00015009712 ENSMMNG00015009720 Actinopterygii ANCESTRAL SPECIES 230 ENSGT00940000160756 ENSGT00940000159517 ENSGT00950000183188.A.a #20 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.b ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00950000182825.A.a.b.a.b.a.b ##21 ENSGT00940000154457.a.a #22 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000015124 ENSGT00390000016940.c.a ENSGT00940000158593 ENSGT00730000111107 ENSGT00390000003749 ENSGT00390000001138.a ENSGT00390000005536 ENSGT00940000161997.b Neopterygii ANCESTRAL SPECIES 71 ENSGT00940000159517 ENSGT00950000183188.A.a #20 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.b ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00950000182825.A.a.b.a.b.a.b ##21 ENSGT00940000154457.a.a #22 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000015124 ENSGT00390000016940.c.a ENSGT00940000158593 ENSGT00730000111107 ENSGT00390000003749 ENSGT00390000001138.a ENSGT00390000005536 ENSGT00940000161997.b ENSGT00940000156785 ENSGT00390000013978.d ENSGT00950000183178.a ENSGT00940000155637 ENSGT00390000002174.a ENSGT00390000006330.a.b Osteoglossocephalai ANCESTRAL SPECIES 45 ENSGT00940000154770 ENSGT00940000158208.a.b ##13 ENSGT00390000017840 ENSGT00950000182905.a.a.b ENSGT00940000161297 ENSGT00940000155330.c ENSGT01040000240451.a.b.a #14 ENSGT00940000159587 ENSGT00940000159517 ENSGT00950000183188.A.a #20 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.b ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00950000182825.A.a.b.a.b.a.b ##21 ENSGT00940000154457.a.a #22 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000015124 ENSGT00390000016940.c.a.b ENSGT00940000158593.a ENSGT00390000003749 Clupeocephala ANCESTRAL SPECIES 39 ENSGT00940000158956.d ##12 ENSGT00940000154770 ENSGT00940000158208.a.b ##13 ENSGT00390000017840 ENSGT00950000182905.a.a.b ENSGT00940000161297 ENSGT00940000155330.c ENSGT01040000240451.a.b.a #14 ENSGT00940000159587 ENSGT01050000245365 ENSGT00940000178340 ENSGT00940000159517 ENSGT00950000183188.A.a.a ##20 ENSGT00940000154457.a.a.a.a ##22 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.a ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000015124 ENSGT00390000016940.c.a.b ENSGT00940000158593.a ENSGT00390000003749 ENSGT00390000005536 ENSGT01010000222336.b.a.a ENSGT00940000161997.b ENSGT00940000156785 ENSGT00940000155637 ENSGT00390000006330.a.b ENSGT01020000230633 ENSGT00950000183038.a.b.a.g ENSGT00940000157144.c.a ENSGT00940000157144.c.b Otomorpha ANCESTRAL SPECIES 710 ENSGT00950000182825.A.a.b.a.b.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00940000154457.a.b ##22 Otophysi ANCESTRAL SPECIES 171 ENSGT00940000157144.c.a ENSGT00940000161079 ENSGT00950000182908.B.c.a ENSGT01020000230633 ENSGT00390000006330.a.b ENSGT00940000155637 ENSGT00940000156785 ENSGT00940000161997.b ENSGT01010000222336.b.a.a ENSGT00390000005536 ENSGT00390000003749 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.b.d ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.a ##21 ENSGT00950000182825.A.a.b.a.b.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000015124 ENSGT00390000016940.c.a.b ENSGT00940000158593.a ENSGT00950000183188.A.a.a ##20 ENSGT00940000159517 ENSGT00390000002944 #19 ENSGT00940000166043 Characiphysae ANCESTRAL SPECIES 5 ENSGT00950000183038.a.b.a.h ENSGT00390000010523.d ENSGT00940000164745.i.a ENSGT00950000183167.a.b.b.b ENSGT00940000156832 ENSGT01020000230633 ENSGT00390000006330.a.b ENSGT00940000155637 ENSGT00940000156785 ENSGT00940000161997.b ENSGT01010000222336.b.a.a ENSGT00390000005536 ENSGT00390000003749 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.b.d ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000015124 ENSGT00390000016940.c.a.b ENSGT00940000158593.a ENSGT00950000183188.A.a.a ##20 ENSGT00940000159517 ENSGT00390000002944 #19 ENSGT00940000166043 ENSGT00550000074921 ENSGT00940000166500 ENSGT00940000157569 ENSGT00940000156027.b ENSGT00940000160690 ENSGT00390000017509 ENSGT00390000003282.B.f Characiphysae_b ANCESTRAL SPECIES 77 ENSGT00530000063647.B ENSGT00940000157144.c.b ENSGT00530000063734.b ENSGT00950000183038.a.b.a.h ENSGT00390000010523.d ENSGT00940000164745.i.a ENSGT00950000183167.a.b.b.b ENSGT01020000230633 ENSGT00390000006330.a.b ENSGT00940000155637 ENSGT00940000156785 ENSGT00390000005536 ENSGT00390000003749 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.b.d ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 Characoidei ANCESTRAL SPECIES 38 ENSGT00530000063647.B ENSGT00940000157144.c.b ENSGT00530000063734.b ENSGT00950000183038.a.b.a.h ENSGT00390000010523.d ENSGT00940000164745.i.a ENSGT00950000183167.a.b.b.b ENSGT01020000230633 ENSGT00390000006330.a.b ENSGT00940000155637 ENSGT00940000156785 ENSGT00390000005536 ENSGT00390000003749 ENSGT00950000182825.A.a.b.a.b.a.a.a.b.g.b.d ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000000616 ENSGT00390000003282.B.f ENSGT00390000017509 ENSGT00940000160690 ENSGT00940000156027.b ENSGT00940000157569 ENSGT00940000166500 ENSGT00550000074921 ENSGT00940000166043 ENSGT00390000002944 #19 ENSGT00940000159517 ENSGT00950000183188.A.a.a ##20 ENSGT00940000158593.a ENSGT00390000016940.c.a.b Red-bellied piranha MODERN SPECIES 134 hoxc5a (ENSPNAG00000021269) hoxc6a (ENSPNAG00000021260) hoxc8a (ENSPNAG00000021232) hoxc9a (ENSPNAG00000021209) hoxc10a (ENSPNAG00000021203) hoxc11a (ENSPNAG00000021194) hoxc12a (ENSPNAG00000021182) hoxc13a (ENSPNAG00000021147) calcoco1a (ENSPNAG00000021087) rarga (ENSPNAG00000021032) nr1d4a (ENSPNAG00000021009) mfsd5 (ENSPNAG00000021003) GDAP1L1 (ENSPNAG00000020995) #25 ENSPNAG00000020974 ENSPNAG00000020944 ##21 ENSPNAG00000020896 ##22 pmelb (ENSPNAG00000020787) #20 ccnt1 (ENSPNAG00000020735) #17 ENSPNAG00000020671 kansl2 (ENSPNAG00000020653) ENSPNAG00000003654 #16 ENSPNAG00000020565 sdf4 (ENSPNAG00000020540) c1qtnf12 (ENSPNAG00000020520) olfml3a (ENSPNAG00000020508) SYT6 (ENSPNAG00000020499) Mexicana tetra MODERN SPECIES 14 NR4A1 (ENSAMXG00000014433) DGKA (ENSAMXG00000014409) NABP2 (ENSAMXG00000035256) ANKRD52 (ENSAMXG00000014342) COQ10A (ENSAMXG00000016539) cnpy2 (ENSAMXG00000035040) ENSAMXG00000014294 ENSAMXG00000030827 nab2 (ENSAMXG00000014270) ENSAMXG00000039900 INPP1 (ENSAMXG00000036208) mcrs1 (ENSAMXG00000014205) suox (ENSAMXG00000014183) tuba1c (ENSAMXG00000005679) ##21 ENSAMXG00000004471 ##21 ENSAMXG00000008652 ##22 prph (ENSAMXG00000014148) tamm41 (ENSAMXG00000014127) vgll4b (ENSAMXG00000014114) ENSAMXG00000031414 ATG7 (ENSAMXG00000014097) HRH1 (ENSAMXG00000025040) slc6a1b (ENSAMXG00000030361) ENSAMXG00000036510 SLC6A11 (ENSAMXG00000032111) atp2b2 (ENSAMXG00000000039) ENSAMXG00000041363 iars1 (ENSAMXG00000036265) gdf11 (ENSAMXG00000039058) sarnp (ENSAMXG00000004834) #19 cdk2 (ENSAMXG00000030741) Euteleosteomorpha ANCESTRAL SPECIES 691 ENSGT00940000154457.a.a.a.a ##22 ENSGT00940000154457.a.b ##22 Protacanthopterygii ANCESTRAL SPECIES 3 ENSGT00940000157076.j ENSGT00390000001799 ENSGT00940000155569.a.a ENSGT00530000063255.A ENSGT01000000214440.B ENSGT00940000161297 ENSGT00940000155330.c ENSGT01040000240451.a.b.a.b.a ##14 ENSGT00940000159587 ENSGT01050000244940.a.a.g.a ##15 ENSGT00940000154971.v ENSGT00940000166043 ENSGT00390000002944.c ##19 ENSGT00940000159517 ENSGT00950000183188.A.a.a ##20 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000015124 ENSGT00390000016940.c.a.b ENSGT00940000158593.a ENSGT00390000003749 ENSGT00390000005536.n ENSGT00390000005536.m ENSGT00950000182905.a.a.b ENSGT00390000017840 ENSGT00940000158208.a.b ##13 ENSGT00940000154770 ENSGT00940000160351.f ENSGT00940000156890.a.a ##9 ENSGT00390000004897 ENSGT00950000183025.b.b.e.b Salmoninae DUPLICATION Salmoninae ANCESTRAL SPECIES 335 ENSGT00940000178340 ENSGT00940000159517.d ENSGT00950000183188.A.a.a.e ##20 ENSGT00940000154457.a.a.a.a.a.a ##22 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00940000154457.a.b.i ##22 ENSGT00940000160203.a ENSGT00390000016940.c.a.b.d ENSGT00940000158593.a.d ENSGT00390000003749 ENSGT00390000005536.n ENSGT00950000182905.a.a.b.c ENSGT00390000017840.g ENSGT00940000158208.a.b.b ##13 ENSGT00940000154770.vb ENSGT00940000160351.f ENSGT00940000158956.d.b ##12 ENSGT00940000160528.a.c ##8 ENSGT00940000158675.b.a ENSGT00940000158313.a.a.a ##7 ENSGT00940000157046.E.pb.a Salmoninae_a ANCESTRAL SPECIES 15 ENSGT00940000161297 ENSGT00940000155330.c.e ENSGT00940000154276.g.b ENSGT01040000240451.a.b.a.b.a.b ##14 ENSGT00940000159587.k ENSGT01050000244940.a.a.g.a.b ##15 ENSGT00390000002215.j.a ENSGT00530000063607.a.n.a ##16 ENSGT00940000154971.v ENSGT00940000166043.c ENSGT00390000002944.c.a ##19 ENSGT00940000159517.d ENSGT00950000183188.A.a.a.e ##20 ENSGT00950000183165.b.b.a.a ENSGT00940000154457.a.a.a.a.b ##22 ENSGT00940000154457.a.b.i ##22 ENSGT00940000160203.a ENSGT00390000016940.c.a.b.d ENSGT00940000158593.a.d ENSGT00390000003749 ENSGT00390000005536.n ENSGT00950000182905.a.a.b.c ENSGT00390000017840.g ENSGT00940000158208.a.b.b ##13 ENSGT00940000154770.vb ENSGT00940000160351.f ENSGT00940000158956.d.b ##12 ENSGT00990000211052 ENSGT00940000160528.a.c ##8 ENSGT00940000158675.b.a ENSGT00940000158313.a.a.a ##7 Salmo ANCESTRAL SPECIES 42 ENSGT00940000155330.c.e ENSGT00940000154276.g.b ENSGT01040000240451.a.b.a.b.a.b ##14 ENSGT00940000159587.k ENSGT01050000244940.a.a.g.a.b ##15 ENSGT00390000002215.j.a ENSGT00530000063607.a.n.a ##16 ENSGT00940000154971.v ENSGT00940000166043.c ENSGT00390000002944.c.a ##19 ENSGT00940000159517.d ENSGT00950000183188.A.a.a.e ##20 ENSGT00940000154457.a.a.a.a.a.a ##22 ENSGT00950000183165.b.b.a.a.b ENSGT00940000154457.a.a.a.a.b ##22 ENSGT00940000154457.a.b.i ##22 ENSGT00940000160203.a ENSGT00390000016940.c.a.b.d ENSGT00940000158593.a.d ENSGT00390000003749 ENSGT00390000005536.n ENSGT00950000182905.a.a.b.c ENSGT00390000017840.g ENSGT00940000158208.a.b.b ##13 ENSGT00940000154770.vb ENSGT00940000160351.f ENSGT00940000158956.d.b ##12 ENSGT00990000211052 ENSGT00940000160528.a.c ##8 ENSGT00940000158675.b.a ENSGT00940000158313.a.a.a ##7 Atlantic salmon MODERN SPECIES 14 ENSSSAG00000099525 stx16 (ENSSSAG00000051743) ENSSSAG00000081436 ENSSSAG00000093889 ENSSSAG00000081424 ##14 ENSSSAG00000084911 ENSSSAG00000122117 ##15 ENSSSAG00000081291 ##16 ENSSSAG00000121952 ENSSSAG00000081289 ENSSSAG00000081288 ENSSSAG00000081276 ##19 cdk2 (ENSSSAG00000081273) ENSSSAG00000081271 ##20 ENSSSAG00000081268 ##21 ENSSSAG00000081267 ##22 ENSSSAG00000120054 ##22 prph (ENSSSAG00000081265) ENSSSAG00000081262 ENSSSAG00000081259 ENSSSAG00000081255 ENSSSAG00000081252 ENSSSAG00000065105 ENSSSAG00000109811 mettl1 (ENSSSAG00000081237) MARCHF9 (ENSSSAG00000106845) ##13 CDK4 (ENSSSAG00000081232) TSPAN31 (ENSSSAG00000114003) AGAP2 (ENSSSAG00000081214) ##12 ENSSSAG00000113917 ##8 ENSSSAG00000083495 River trout MODERN SPECIES 7 EEF1AKMT3 (ENSSTUG00000015200) slc11a2 (ENSSTUG00000015227) ENSSTUG00000015520 ENSSTUG00000015526 ##14 avil (ENSSTUG00000015750) TMBIM6 (ENSSTUG00000018856) ##15 ENSSTUG00000019264 ENSSTUG00000019273 ##16 ENSSTUG00000019341 gdf11 (ENSSTUG00000019356) sarnp (ENSSTUG00000019366) ##19 cdk2 (ENSSTUG00000019455) pmela (ENSSTUG00000019493) ##20 ENSSTUG00000019504 TUBA4B (ENSSTUG00000019519) ##22 ENSSTUG00000019623 ##22 ENSSTUG00000019639 prph (ENSSTUG00000019642) ENSSTUG00000019680 MMP19 (ENSSTUG00000019690) suox (ENSSTUG00000019706) ENSSTUG00000019716 ENSSTUG00000019728 mcrs1 (ENSSTUG00000019739) cyp27b1 (ENSSTUG00000019763) mettl1 (ENSSTUG00000020097) MARCHF9 (ENSSTUG00000020124) ##13 cdk4 (ENSSTUG00000020137) TSPAN31 (ENSSTUG00000002246) AGAP2 (ENSSTUG00000002929) ##12 ENSSTUG00000003009 Oncorhynchus ANCESTRAL SPECIES ENSGT00940000154457.a.b.i ##22 Oncorhynchus_a ANCESTRAL SPECIES ENSGT00940000154457.a.b.i ##22 Coho salmon MODERN SPECIES 25 slc11a2 (ENSOKIG00005034199) ENSOKIG00005034141 CTDSP2 (ENSOKIG00005034104) ##14 avil (ENSOKIG00005031571) TMBIM6 (ENSOKIG00005031205) ##15 ENSOKIG00005031176 ENSOKIG00005031161 ##16 ENSOKIG00005031152 gdf11 (ENSOKIG00005031138) ENSOKIG00005031131 SARNP (ENSOKIG00005031020) ##19 cdk2 (ENSOKIG00005030929) pmela (ENSOKIG00005030914) ##20 ENSOKIG00005030909 ##21 ENSOKIG00005030897 ##22 ENSOKIG00005030876 ##22 PRPH (ENSOKIG00005030805) ENSOKIG00005030774 MMP19 (ENSOKIG00005030747) suox (ENSOKIG00005030755) cyp27b1 (ENSOKIG00005030670) mettl1 (ENSOKIG00005030597) MARCHF9 (ENSOKIG00005030579) ##13 CDK4 (ENSOKIG00005030553) TSPAN31 (ENSOKIG00005030501) AGAP2 (ENSOKIG00005030140) ##12 ENSOKIG00005030020 ENSOKIG00005030006 ENSOKIG00005029979 ##8 SPRYD3 (ENSOKIG00005029871) ENSOKIG00005029858 ##7 Rainbow trout MODERN SPECIES 28 ENSOMYG00000047571 ##14 ENSOMYG00000047558 ENSOMYG00000047520 ##15 ENSOMYG00000051097 ENSOMYG00000060775 ENSOMYG00000047510 ##16 ENSOMYG00000047506 ENSOMYG00000047503 ENSOMYG00000047499 ##19 ENSOMYG00000047493 ENSOMYG00000048658 ENSOMYG00000047480 ##20 ENSOMYG00000070767 ##21 ENSOMYG00000056942 ##22 ENSOMYG00000073921 ##31 ENSOMYG00000047471 ##22 ENSOMYG00000047467 ENSOMYG00000073139 ENSOMYG00000075691 ENSOMYG00000047457 ENSOMYG00000047454 ENSOMYG00000047452 ENSOMYG00000047434 ENSOMYG00000047410 ENSOMYG00000049565 ##31 MARCHF9 (ENSOMYG00000047409) ##13 CDK4 (ENSOMYG00000047397) TSPAN31 (ENSOMYG00000047383) AGAP2 (ENSOMYG00000047366) ##12 ENSOMYG00000047352 ENSOMYG00000057750 Huchen MODERN SPECIES 3490 ENSHHUG00000016551 cdk2 (ENSHHUG00000015903) pmela (ENSHHUG00000015891) ##20 ENSHHUG00000015887 ##22 ENSHHUG00000015884 ##21 ENSHHUG00000015354 ##22 prph (ENSHHUG00000015328) Salmoninae ANCESTRAL SPECIES 3 ENSGT00940000155569.a.a.h ENSGT00530000063255.A.k ENSGT01000000214440.B.d ENSGT00940000155330.c.f ENSGT00940000154276.g.a ENSGT01040000240451.a.b.a.b.a.a ##14 ENSGT00940000159587.l ENSGT01050000244940.a.a.g.a.a ##15 ENSGT00390000002215.j.b ENSGT00530000063607.a.n.b ##16 ENSGT00940000166043.d ENSGT00390000002944.c ##19 ENSGT00940000159517.c ENSGT00950000183188.A.a.a.f ##20 ENSGT00940000154457.a.a.a.a.a.b ##22 ENSGT00940000154457.a.b.j ##22 ENSGT00940000160203.b ENSGT00390000015124 ENSGT00390000016940.c.a.b.c ENSGT00940000158593.a.c ENSGT00390000005536.m ENSGT00950000182905.a.a.b.d ENSGT00390000017840.h ENSGT00940000158208.a.b.a ##13 ENSGT00940000154770.wb ENSGT00940000158956.d.a ##12 ENSGT00940000154307.D.j ##10 ENSGT00940000156890.a.a ##9 ENSGT00940000160528.a.d ##8 ENSGT00940000158675.b.b ENSGT00940000158313.a.a.b ##7 Salmoninae_a ANCESTRAL SPECIES 21 ENSGT00530000063255.A.k ENSGT01000000214440.B.d ENSGT01000000221659 ENSGT00940000155330.c.f ENSGT00940000154276.g.a ENSGT01040000240451.a.b.a.b.a.a ##14 ENSGT00940000159587.l ENSGT01050000244940.a.a.g.a.a ##15 ENSGT00390000002215.j.b ENSGT00530000063607.a.n.b ##16 ENSGT00940000166043.d ENSGT00390000002944.c.b ##19 ENSGT00940000159517.c ENSGT00950000183188.A.a.a.f ##20 ENSGT00940000154457.a.a.a.a.a.b ##22 ENSGT00940000154457.a.b.j ##22 ENSGT00940000160203.b ENSGT00390000015124 ENSGT00390000016940.c.a.b.c.a ENSGT00940000158593.a.c ENSGT00390000005536.m ENSGT00950000182905.a.a.b.d ENSGT00390000017840.h ENSGT00940000158208.a.b.a ##13 ENSGT00940000154770.wb ENSGT00940000158956.d.a ##12 ENSGT00940000154307.D.j ##10 ENSGT00940000156890.a.a ##9 ENSGT00940000160528.a.d ##8 ENSGT00940000158675.b.b ENSGT00940000158313.a.a.b ##7 Oncorhynchus ANCESTRAL SPECIES 1 ENSGT00530000063255.A.k ENSGT01000000214440.B.d ENSGT01000000221659 ENSGT00940000155330.c.f ENSGT00940000154276.g.a ENSGT01040000240451.a.b.a.b.a.a ##14 ENSGT00940000159587.l ENSGT01050000244940.a.a.g.a.a ##15 ENSGT00390000002215.j.b ENSGT00530000063607.a.n.b ##16 ENSGT00940000166043.d ENSGT00390000002944.c.b ##19 ENSGT00940000159517.c ENSGT00950000183188.A.a.a.f ##20 ENSGT00940000154457.a.a.a.a.a.b ##22 ENSGT00940000154457.a.b.j ##22 ENSGT00940000160203.b ENSGT00390000015124 ENSGT00390000016940.c.a.b.c.b ENSGT00940000158593.a.c ENSGT00390000005536.m ENSGT00950000182905.a.a.b.d ENSGT00390000017840.h ENSGT00940000158208.a.b.a ##13 ENSGT00940000154770.wb ENSGT00940000158956.d.a ##12 ENSGT00940000154307.D.j ##10 ENSGT00940000156890.a.a ##9 ENSGT00940000160528.a.d ##8 ENSGT00940000158675.b.b ENSGT00940000158313.a.a.b ##7 Oncorhynchus_a ANCESTRAL SPECIES 3 ENSGT00530000063255.A.k ENSGT01000000214440.B.d ENSGT01000000221659 ENSGT00940000155330.c.f ENSGT00940000154276.g.a ENSGT01040000240451.a.b.a.b.a.a ##14 ENSGT00940000159587.l ENSGT01050000244940.a.a.g.a.a ##15 ENSGT00390000002215.j.b ENSGT00530000063607.a.n.b ##16 ENSGT00940000166043.d ENSGT00390000002944.c.b ##19 ENSGT00940000159517.c ENSGT00950000183188.A.a.a.f ##20 ENSGT00940000154457.a.a.a.a.a.b ##22 ENSGT00940000154457.a.b.j ##22 ENSGT00940000160203.b ENSGT00390000015124 ENSGT00390000016940.c.a.b.c.b ENSGT00940000158593.a.c ENSGT00390000005536.m ENSGT00950000182905.a.a.b.d ENSGT00390000017840.h ENSGT00940000158208.a.b.a ##13 ENSGT00940000154770.wb ENSGT00940000158956.d.a ##12 ENSGT00940000154307.D.j ##10 ENSGT00940000156890.a.a ##9 ENSGT00940000160528.a.d ##8 ENSGT00940000158675.b.b ENSGT00940000158313.a.a.b ##7 Coho salmon MODERN SPECIES npepl1 (ENSOKIG00005004189) STX16 (ENSOKIG00005004161) ENSOKIG00005004009 HIGD1A (ENSOKIG00005003974) CTDSP2 (ENSOKIG00005003944) ##14 AVIL (ENSOKIG00005003921) TMBIM6 (ENSOKIG00005003910) ##15 ENSOKIG00005003904 ENSOKIG00005003895 ##16 ENSOKIG00005003886 ENSOKIG00005003857 ##19 CDK2 (ENSOKIG00005003833) ENSOKIG00005003829 ENSOKIG00005003819 ##20 ENSOKIG00005003813 ##22 ENSOKIG00005003801 ##22 prph (ENSOKIG00005003787) timeless (ENSOKIG00005003732) ENSOKIG00005003704 MMP19 (ENSOKIG00005003697) mcrs1 (ENSOKIG00005003686) CYP27B1 (ENSOKIG00005003640) ENSOKIG00005003622 MARCHF9 (ENSOKIG00005003617) ##13 cdk4 (ENSOKIG00005003611) ENSOKIG00005003607 AGAP2 (ENSOKIG00005003591) ##12 GPR182 (ENSOKIG00005003575) ##10 PIP4K2C (ENSOKIG00005003471) ##9 ENSOKIG00005003443 ##8 SPRYD3 (ENSOKIG00005003429) Chinook salmon MODERN SPECIES 11 ctsz (ENSOTSG00005000985) npepl1 (ENSOTSG00005001190) STX16 (ENSOTSG00005001203) ENSOTSG00005001214 slc11a2 (ENSOTSG00005001258) HIGD1A (ENSOTSG00005001663) CTDSP2 (ENSOTSG00005001666) ##14 avil (ENSOTSG00005001689) TMBIM6 (ENSOTSG00005002357) ##15 ENSOTSG00005002363 ENSOTSG00005002368 ##16 gdf11 (ENSOTSG00005002380) sarnp (ENSOTSG00005002393) ##19 cdk2 (ENSOTSG00005002569) ENSOTSG00005002573 ##20 ENSOTSG00005002585 ##22 prph (ENSOTSG00005002594) timeless (ENSOTSG00005002616) ENSOTSG00005002640 MMP19 (ENSOTSG00005002642) mcrs1 (ENSOTSG00005002651) cyp27b1 (ENSOTSG00005002747) mettl1 (ENSOTSG00005002749) ENSOTSG00005002756 ##13 cdk4 (ENSOTSG00005002760) AGAP2 (ENSOTSG00005002775) ##12 GPR182 (ENSOTSG00005002818) ##10 PIP4K2C (ENSOTSG00005002861) ##9 ENSOTSG00005003697 ##8 SPRYD3 (ENSOTSG00005003701) ENSOTSG00005003707 ##7 Rainbow trout MODERN SPECIES 8 ENSOMYG00000017242 ENSOMYG00000071026 nramp-alpha (ENSOMYG00000017702) hig1a (ENSOMYG00000020981) ENSOMYG00000021004 ##14 ENSOMYG00000021276 ENSOMYG00000050293 ENSOMYG00000022320 ##15 ENSOMYG00000022335 ENSOMYG00000022383 ##16 ENSOMYG00000022454 ENSOMYG00000022493 ##19 ENSOMYG00000022586 ENSOMYG00000022608 ##20 ENSOMYG00000022658 ##22 ENSOMYG00000022743 ##22 ENSOMYG00000022779 ENSOMYG00000022941 ENSOMYG00000064376 ENSOMYG00000033987 ENSOMYG00000034027 ENSOMYG00000034078 MARCHF9 (ENSOMYG00000034152) ##13 CDK4 (ENSOMYG00000034166) AGAP2 (ENSOMYG00000034215) ##12 ENSOMYG00000034294 ##9 ENSOMYG00000062479 IGFBP-6A2 (ENSOMYG00000034410) ##8 ENSOMYG00000034484 ENSOMYG00000034548 ##7 ENSOMYG00000034565 Salmo ANCESTRAL SPECIES 6 ENSGT01000000214440.B.d ENSGT01000000221659 ENSGT00940000155330.c.f ENSGT00940000154276.g.a ENSGT01040000240451.a.b.a.a ##14 ENSGT00940000159587.l ENSGT01050000244940.a.a.g.a.a ##15 ENSGT00390000002215.j.b ENSGT00530000063607.a.n.b ##16 ENSGT00940000166043.d ENSGT00390000002944.c.b ##19 ENSGT00940000159517.c ENSGT00950000183188.A.a.a.f ##20 ENSGT00940000154457.a.a.a.a.a.b ##22 ENSGT00950000183165.b.b.a.a.a ENSGT00940000154457.a.b.j ##22 ENSGT00940000160203.b ENSGT00390000015124 ENSGT00390000016940.c.a.b.c.a ENSGT00940000158593.a.c ENSGT00390000005536.m ENSGT00950000182905.a.a.b.d ENSGT00390000017840.h ENSGT00940000158208.a.b.a ##13 ENSGT00940000154770.wb ENSGT00940000158956.d.a ##12 ENSGT00940000154307.D.j ##10 ENSGT00940000156890.a.a ##9 ENSGT00940000160528.a.d ##8 ENSGT00940000158675.b.b ENSGT00940000158313.a.a.b ##7 Atlantic salmon MODERN SPECIES 3 ENSSSAG00000114701 ENSSSAG00000055407 ENSSSAG00000055460 ENSSSAG00000093593 ##14 ENSSSAG00000095673 ENSSSAG00000093567 ENSSSAG00000062862 ##15 ENSSSAG00000085110 ENSSSAG00000119317 ##16 ENSSSAG00000062891 ENSSSAG00000062906 ##19 ENSSSAG00000110386 ENSSSAG00000062931 ##20 ENSSSAG00000104771 ##22 ENSSSAG00000099199 ENSSSAG00000095268 ##22 ENSSSAG00000064959 timeless (ENSSSAG00000063060) ENSSSAG00000064977 ENSSSAG00000065034 ENSSSAG00000081242 ENSSSAG00000066042 MARCHF9 (ENSSSAG00000120192) ##13 CDK4 (ENSSSAG00000066064) ENSSSAG00000114855 AGAP2 (ENSSSAG00000066082) ##12 ENSSSAG00000066219 ##10 ENSSSAG00000066258 ##9 ENSSSAG00000095933 ##8 ENSSSAG00000113311 ENSSSAG00000066559 ##7 Huchen MODERN SPECIES 1241 npepl1 (ENSHHUG00000016677) STX16 (ENSHHUG00000016740) slc11a2 (ENSHHUG00000016771) HIGD1A (ENSHHUG00000017494) CTDSP2 (ENSHHUG00000017515) ##14 avil (ENSHHUG00000017576) TMBIM6 (ENSHHUG00000018627) ##15 ENSHHUG00000018738 ENSHHUG00000018783 ##16 ENSHHUG00000018792 ENSHHUG00000018804 gdf11 (ENSHHUG00000018806) cdk2 (ENSHHUG00000018828) ENSHHUG00000018859 ##20 ENSHHUG00000019003 ##22 ENSHHUG00000019011 ##22 prph (ENSHHUG00000019277) Northern pike MODERN SPECIES 16 npepl1 (ENSELUG00000021330) STX16 (ENSELUG00000021301) EEF1AKMT3 (ENSELUG00000021275) slc11a2 (ENSELUG00000021263) ENSELUG00000021243 ctdsp2 (ENSELUG00000021179) ##14 avil (ENSELUG00000021164) TMBIM6 (ENSELUG00000021113) ##15 ENSELUG00000021074 ENSELUG00000021041 #16 ENSELUG00000021013 gdf11 (ENSELUG00000021000) sarnp (ENSELUG00000020983) ##19 cdk2 (ENSELUG00000020932) pmela (ENSELUG00000020916) ##20 ENSELUG00000020904 ##22 prph (ENSELUG00000020863) timeless (ENSELUG00000020811) ENSELUG00000020750 MMP19 (ENSELUG00000020724) suox (ENSELUG00000020717) mcrs1 (ENSELUG00000020704) cyp27b1 (ENSELUG00000020673) mettl1 (ENSELUG00000020660) ENSELUG00000020606 ##13 cdk4 (ENSELUG00000020584) TSPAN31 (ENSELUG00000020546) AGAP2 (ENSELUG00000020527) ##12 PIP4K2C (ENSELUG00000020497) ##9 igfbp6a (ENSELUG00000020481) ##8 SPRYD3 (ENSELUG00000020465) Acanthomorphata ANCESTRAL SPECIES 489 ENSGT00950000183165.b.b.a.a ENSGT00940000154457.a.a.a.a ##22 ENSGT00940000154457.a.b ##22 Euacanthomorphacea ANCESTRAL SPECIES 515 ENSGT00940000154457.a.a.a.a ##22 ENSGT00940000154457.a.b ##22 Percomorphaceae ANCESTRAL SPECIES 451 ENSGT00940000154457.a.a.a.a ##22 ENSGT00940000154457.a.b ##22 Percomorphaceae_B ANCESTRAL SPECIES 309 ENSGT00940000154457.a.a.a.a ##22 ENSGT00940000154457.a.b ##22 Percomorphaceae_C ANCESTRAL SPECIES 247 ENSGT00940000154457.a.a.a.a ##22 ENSGT00940000154457.a.b ##22 Eupercaria ANCESTRAL SPECIES 209 ENSGT00940000154457.a.a.a.a ##22 ENSGT00940000154457.a.b ##22 Eupecaria_A ANCESTRAL SPECIES 210 ENSGT00940000154457.a.a.a.a ##22 ENSGT00940000154457.a.b ##22 Eupecaria_B ANCESTRAL SPECIES 190 ENSGT00940000154457.a.a.a.a.c ##22 ENSGT00940000154457.a.b ##22 Perciformes ANCESTRAL SPECIES 196 ENSGT00940000154457.a.a.a.a.c ##22 ENSGT00940000154457.a.b ##22 Perciformes_a ANCESTRAL SPECIES 291 ENSGT00940000154457.a.a.a.a.c ##22 ENSGT00940000154457.a.b ##22 Pike perch MODERN SPECIES 103 tspan31 (ENSSLUG00000024752) MARCHF9 (ENSSLUG00000024754) #13 SLC11A2 (ENSSLUG00000001755) ctdsp2 (ENSSLUG00000002138) #14 TMBIM6 (ENSSLUG00000002156) #15 ENSSLUG00000002179 #16 kansl2 (ENSSLUG00000002197) ccnt1 (ENSSLUG00000002225) #17 sarnp (ENSSLUG00000002239) #19 pmelb (ENSSLUG00000002252) #20 tuba1c (ENSSLUG00000002293) ##21 ENSSLUG00000002305 ##22 ENSSLUG00000002329 ##22 ENSSLUG00000002336 ##22 TUBA4B (ENSSLUG00000002342) ##22 ENSSLUG00000002351 ##22 jph2 (ENSSLUG00000002353) #24 GDAP1L1 (ENSSLUG00000002357) #25 fitm2 (ENSSLUG00000002359) #26 R3HDML (ENSSLUG00000002362) #27 hnf4a (ENSSLUG00000002372) #28 ttpal (ENSSLUG00000002394) #29 pkig (ENSSLUG00000002403) #30 ada (ENSSLUG00000002481) #32 ccn5 (ENSSLUG00000002859) #33 ENSSLUG00000002861 ENSSLUG00000002866 Percomorphaceae_D ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Carangaria ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Carangaria_A ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Barramundi perch MODERN SPECIES 175 FOXJ3 (ENSLCAG00010024066) PRDM2 (ENSLCAG00010024058) kaznb (ENSLCAG00010024054) zgc:123105 (ENSLCAG00010024039) ENSLCAG00010024036 ENSLCAG00010024018 ENSLCAG00010024007 hnrnpaba (ENSLCAG00010024001) btg4 (ENSLCAG00010023998) slc25a14 (ENSLCAG00010023990) GPR119 (ENSLCAG00010023984) clk4b (ENSLCAG00010023973) ponzr2 (ENSLCAG00010023961) HAND1 (ENSLCAG00010023958) sap30l (ENSLCAG00010023954) ENSLCAG00010023888 ##22 GALNT10 (ENSLCAG00010023828) Pleuronectoidei ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Tongue sole DUPLICATION Tongue sole DUPLICATION Tongue sole MODERN SPECIES 1 snrpg (ENSCSEG00000003401) plpbp (ENSCSEG00000003395) tmed4 (ENSCSEG00000003386) ikbkg (ENSCSEG00000003341) sephs3 (ENSCSEG00000003334) ap4b1 (ENSCSEG00000003328) zgc:101663 (ENSCSEG00000003323) cfap126 (ENSCSEG00000003322) ccnq (ENSCSEG00000003319) atp2b3b (ENSCSEG00000003290) rpl10 (ENSCSEG00000003267) ENSCSEG00000003231 las1l (ENSCSEG00000003223) ENSCSEG00000003220 FLNA (ENSCSEG00000003135) ENSCSEG00000003121 ##22 ENSCSEG00000003120 MRPL49 (ENSCSEG00000003115) ENSCSEG00000003106 ENSCSEG00000003100 ENSCSEG00000003071 prkcz (ENSCSEG00000003042) skia (ENSCSEG00000003029) SNPH (ENSCSEG00000003019) sdcbp2 (ENSCSEG00000002995) fkbp1ab (ENSCSEG00000002991) nsfl1c (ENSCSEG00000002978) ENSCSEG00000002977 cox4i2 (ENSCSEG00000002973) bcl2l1 (ENSCSEG00000002958) ARFGEF2 (ENSCSEG00000002931) Tongue sole MODERN SPECIES 1 FLNA (ENSCSEG00000003135) ENSCSEG00000003220 las1l (ENSCSEG00000003223) ENSCSEG00000003231 rpl10 (ENSCSEG00000003267) atp2b3b (ENSCSEG00000003290) ccnq (ENSCSEG00000003319) cfap126 (ENSCSEG00000003322) zgc:101663 (ENSCSEG00000003323) ap4b1 (ENSCSEG00000003328) sephs3 (ENSCSEG00000003334) ikbkg (ENSCSEG00000003341) tmed4 (ENSCSEG00000003386) plpbp (ENSCSEG00000003395) snrpg (ENSCSEG00000003401) ENSCSEG00000003411 ##22 dnali1 (ENSCSEG00000003419) ENSCSEG00000003422 TBC1D22B (ENSCSEG00000003426) MYT1 (ENSCSEG00000003436) PCMTD2 (ENSCSEG00000003452) PLXNA1 (ENSCSEG00000003464) ctnnbl1 (ENSCSEG00000003479) ENSCSEG00000003498 ENSCSEG00000003515 znf341 (ENSCSEG00000003536) itchb (ENSCSEG00000003548) ENSCSEG00000003575 VDR (ENSCSEG00000003582) HDAC7 (ENSCSEG00000003593) twist3 (ENSCSEG00000003645) Tongue sole DUPLICATION Tongue sole MODERN SPECIES 13 hccsb (ENSCSEG00000007016) ENSCSEG00000007011 ptbp2a (ENSCSEG00000006982) ENSCSEG00000006963 snx7 (ENSCSEG00000006952) plppr5b (ENSCSEG00000006927) ENSCSEG00000006917 ENSCSEG00000006913 cnn3b (ENSCSEG00000009562) alg14 (ENSCSEG00000009546) STEAP2 (ENSCSEG00000009540) plag1 (ENSCSEG00000009528) chchd7 (ENSCSEG00000009525) ENSCSEG00000009517 ##22 ENSCSEG00000009493 ENSCSEG00000009478 ##22 ENSCSEG00000009467 RSU1 (ENSCSEG00000009452) trdmt1 (ENSCSEG00000009418) ENSCSEG00000009403 f3a (ENSCSEG00000009377) acp5b (ENSCSEG00000009359) abcd3a (ENSCSEG00000009258) ENSCSEG00000009221 ENSCSEG00000009215 ENSCSEG00000009183 ENSCSEG00000009169 CUBN (ENSCSEG00000009071) ENSCSEG00000009044 Tongue sole MODERN SPECIES 13 MTPAP (ENSCSEG00000007072) ENSCSEG00000007048 hccsb (ENSCSEG00000007016) ENSCSEG00000007011 ptbp2a (ENSCSEG00000006982) ENSCSEG00000006963 snx7 (ENSCSEG00000006952) plppr5b (ENSCSEG00000006927) ENSCSEG00000006917 ENSCSEG00000006913 cnn3b (ENSCSEG00000009562) alg14 (ENSCSEG00000009546) STEAP2 (ENSCSEG00000009540) plag1 (ENSCSEG00000009528) chchd7 (ENSCSEG00000009525) ENSCSEG00000009517 ##22 ENSCSEG00000009493 ENSCSEG00000009478 ##22 ENSCSEG00000009467 RSU1 (ENSCSEG00000009452) trdmt1 (ENSCSEG00000009418) ENSCSEG00000009403 f3a (ENSCSEG00000009377) acp5b (ENSCSEG00000009359) abcd3a (ENSCSEG00000009258) ENSCSEG00000009221 ENSCSEG00000009215 ENSCSEG00000009183 ENSCSEG00000009169 CUBN (ENSCSEG00000009071) ENSCSEG00000009044 Ovalentaria ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Atherinomorphae ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Oryzias ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Oryzias_b ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Javanese ricefish MODERN SPECIES 5 pitx1 (ENSOJAG00000010296) macroh2a1 (ENSOJAG00000010208) faxdc2 (ENSOJAG00000010183) LARP1 (ENSOJAG00000010017) zgc:56585 (ENSOJAG00000009968) zgc:56585 (ENSOJAG00000009928) ENSOJAG00000009910 ENSOJAG00000009192 rab24 (ENSOJAG00000009149) pgrmc1 (ENSOJAG00000009125) cox7b (ENSOJAG00000009103) pgk1 (ENSOJAG00000008736) kctd7 (ENSOJAG00000008717) KCNJ6 (ENSOJAG00000008695) rabgef1 (ENSOJAG00000008665) ENSOJAG00000008391 ##22 ENSOJAG00000008235 vps26c (ENSOJAG00000008163) KCNJ15 (ENSOJAG00000008158) SMG8 (ENSOJAG00000008152) ENSOJAG00000008133 ppm1e (ENSOJAG00000008124) TRIM37 (ENSOJAG00000008065) pou2f3 (ENSOJAG00000008034) ENSOJAG00000005693 ENSOJAG00000005480 ENSOJAG00000005432 ENSOJAG00000005423 ENSOJAG00000005323 ENSOJAG00000005311 zw10 (ENSOJAG00000005116) Ovalentaria_B ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Cichlidae ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Pseudocrenilabrinae ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Pseudocrenilabrinae_A ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Haplochromini ANCESTRAL SPECIES ENSGT00940000154457.a.b ##22 Burton s mouthbrooder MODERN SPECIES 416 tgfb1a (ENSHBUG00000002783) ppp5c (ENSHBUG00000002768) ENSHBUG00000002745 GCGR (ENSHBUG00000002735) ENSHBUG00000002732 ENSHBUG00000002730 cldna (ENSHBUG00000000051) ENSHBUG00000002715 ENSHBUG00000002665 sbds (ENSHBUG00000002660) ENSHBUG00000002648 tyw1 (ENSHBUG00000002640) CALN1 (ENSHBUG00000002607) ENSHBUG00000002597 rhbdd1 (ENSHBUG00000002590) ENSHBUG00000002575 ##22 ENSHBUG00000002569 ##21 eml2 (ENSHBUG00000002552) GPR4 (ENSHBUG00000002495) NOVA1 (ENSHBUG00000002485) polr1g (ENSHBUG00000001063) irf2bp1 (ENSHBUG00000002463) foxa3 (ENSHBUG00000002454) PLD3 (ENSHBUG00000002445) ENSHBUG00000002424 kcnk6 (ENSHBUG00000002403) ENSHBUG00000002392 blvrb (ENSHBUG00000002376) ENSHBUG00000002354 ENSHBUG00000002320 ENSHBUG00000002307 Pomacentridae ANCESTRAL SPECIES 39 ENSGT01050000244814.a.b.a ENSGT00940000154768.A.b ENSGT00940000157100.a ENSGT00940000164958.a ENSGT00940000156922.b.a ENSGT00940000165096.b.b ENSGT00940000169412 ENSGT00940000164900.j ENSGT00940000164726.b ENSGT00940000163867 ENSGT00940000158031.c ENSGT00940000160624 ENSGT00940000154208.c.b ENSGT00940000153496.a.b.a ENSGT00940000156486 ENSGT00940000154457.a.b ##22 ENSGT00940000167542 ENSGT00390000018570.b.a ENSGT00990000211971 ENSGT01000000216149 ENSGT00390000007870 ENSGT01100000263555.b ENSGT00940000163587.a.b.a.c.b ENSGT00940000167259 ENSGT01100000263504.a.a ENSGT00940000159360 ENSGT00730000110939.b ENSGT00530000063718.a.a ENSGT00940000162951 ENSGT00900000141125 ENSGT00390000013574 Bicolor damselfish MODERN SPECIES 590 ENSSPAG00000010916 WFIKKN2 (ENSSPAG00000011038) tob1b (ENSSPAG00000011043) SPAG9 (ENSSPAG00000011066) DAGLB (ENSSPAG00000011248) ENSSPAG00000011300 ##22 mrpl58 (ENSSPAG00000011315) CDR2L (ENSSPAG00000011330) ENSSPAG00000011345 sap30bp (ENSSPAG00000011351) itgb4 (ENSSPAG00000011394) zgc:194990 (ENSSPAG00000011563) ENSSPAG00000011614 H3-3B (ENSSPAG00000011645) unk (ENSSPAG00000011660) UNC13D (ENSSPAG00000011710) wbp2 (ENSSPAG00000011799) ENSSPAG00000011811 mrpl38 (ENSSPAG00000011844) Pomacentridae_A ANCESTRAL SPECIES 87 ENSGT00940000154208.c.b ENSGT00940000153496.a.b.a ENSGT00940000156486 ENSGT00940000154457.a.b ##22 ENSGT00940000167542 ENSGT00390000018570.b.a ENSGT01000000216149 ENSGT00390000007870 ENSGT01100000263555.b ENSGT00940000163587.a.b.a.c.b ENSGT00940000167259 ENSGT01100000263504.a.a ENSGT00940000159360 ENSGT00730000110939.b ENSGT00530000063718.a.a ENSGT00940000162951 ENSGT00900000141125 ENSGT00390000013574 ENSGT00940000178199 Amphiprion ANCESTRAL SPECIES 112 ENSGT00940000154208.c.b ENSGT00940000153496.a.b.a ENSGT00940000156486 ENSGT00940000154457.a.b ##22 ENSGT00940000167542 ENSGT00390000018570.b.a ENSGT00390000007870 ENSGT01100000263555.b ENSGT00940000163587.a.b.a.c.b ENSGT00940000167259 ENSGT01100000263504.a.a ENSGT00940000159360 ENSGT00730000110939.b ENSGT00530000063718.a.a ENSGT00940000162951 ENSGT00900000141125 ENSGT00390000013574 ENSGT00940000178199 ENSGT00940000153514.a.b Clown anemonefish MODERN SPECIES 1815 TOX2 (ENSAOCG00000017743) ENSAOCG00000001246 tob1b (ENSAOCG00000017801) SPAG9 (ENSAOCG00000017913) DAGLB (ENSAOCG00000017935) ENSAOCG00000017964 ##22 mrpl58 (ENSAOCG00000017975) CDR2L (ENSAOCG00000018011) ercc4 (ENSAOCG00000018038) Elephant shark DUPLICATION Elephant shark MODERN SPECIES 1747 wnt1 (ENSCMIG00000006124) ENSCMIG00000006129 prkag1 (ENSCMIG00000006147) ENSCMIG00000006184 ENSCMIG00000006188 ENSCMIG00000006189 ENSCMIG00000006195 rhebl1 (ENSCMIG00000006203) ENSCMIG00000006206 ENSCMIG00000006207 ENSCMIG00000006210 ##22 tuba1b (ENSCMIG00000006237) ##21 ENSCMIG00000006295 ##22 ENSCMIG00000006306 prph (ENSCMIG00000006310) ENSCMIG00000006311 ENSCMIG00000006314 ENSCMIG00000006320 ATF1 (ENSCMIG00000006327) dip2ba (ENSCMIG00000006757) Elephant shark MODERN SPECIES 1747 dip2ba (ENSCMIG00000006757) ATF1 (ENSCMIG00000006327) ENSCMIG00000006320 ENSCMIG00000006314 ENSCMIG00000006311 prph (ENSCMIG00000006310) ENSCMIG00000006306 ENSCMIG00000006295 ##22 tuba1b (ENSCMIG00000006237) ##21 ENSCMIG00000006210 ##22 ENSCMIG00000006207 ENSCMIG00000006206 rhebl1 (ENSCMIG00000006203) ENSCMIG00000006195 ENSCMIG00000006189 ENSCMIG00000006188 ENSCMIG00000006184 prkag1 (ENSCMIG00000006147) ENSCMIG00000006129 wnt1 (ENSCMIG00000006124) Gnathostomata ANCESTRAL SPECIES 1578 ENSGT00940000154457.b ##22 ENSGT00550000075037 Elephant shark MODERN SPECIES 1773 ENSCMIG00000016124 ENSCMIG00000016121 retreg2 (ENSCMIG00000016117) ENSCMIG00000016115 zgc:171772 (ENSCMIG00000016111) marchf4l (ENSCMIG00000016108) xrcc5 (ENSCMIG00000016052) tmem169a (ENSCMIG00000016028) ENSCMIG00000016022 ENSCMIG00000016019 ENSCMIG00000015997 ##21 ENSCMIG00000015908 ##21 ENSCMIG00000015808 ##22 stk16 (ENSCMIG00000015788) ENSCMIG00000015785 CFAP65 (ENSCMIG00000015768) ENSCMIG00000015757 Euteleostomi ANCESTRAL SPECIES 1323 ENSGT00940000154457.b ##22 ENSGT00950000182825.A.a.b.a.a ##21 Actinopterygii ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Neopterygii ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Spotted gar DUPLICATION Spotted gar MODERN SPECIES 670 mettl1 (ENSLOCG00000003897) MARCHF9 (ENSLOCG00000003914) #13 cdk4 (ENSLOCG00000003932) tspan31 (ENSLOCG00000003959) agap2 (ENSLOCG00000003977) #12 gpr182 (ENSLOCG00000018184) #10 pip4k2ca (ENSLOCG00000003996) ##9 igfbp6b (ENSLOCG00000004011) #8 spryd3 (ENSLOCG00000004042) TMBIM6 (ENSLOCG00000004059) #15 fmnl3 (ENSLOCG00000004076) ENSLOCG00000018186 ENSLOCG00000004096 cdk2 (ENSLOCG00000004109) pmela (ENSLOCG00000004129) #20 ENSLOCG00000018188 ##22 TUBA1C (ENSLOCG00000004153) ##21 prph (ENSLOCG00000004165) timeless (ENSLOCG00000004180) ENSLOCG00000004214 MMP19 (ENSLOCG00000004229) suox (ENSLOCG00000018190) ENSLOCG00000004233 mcrs1 (ENSLOCG00000004250) SMCO3 (ENSLOCG00000018191) ENSLOCG00000004277 INPP1 (ENSLOCG00000004294) PAN2 (ENSLOCG00000004333) ormdl2 (ENSLOCG00000004357) ENSLOCG00000004370 nemp1 (ENSLOCG00000004393) Spotted gar MODERN SPECIES 663 rab11al (ENSLOCG00000008865) rab25a (ENSLOCG00000008881) lamtor2 (ENSLOCG00000008891) UBQLN4 (ENSLOCG00000008897) zgc:174938 (ENSLOCG00000008906) ENSLOCG00000008923 tmem176l.4 (ENSLOCG00000008935) rpz4 (ENSLOCG00000017684) rpz5 (ENSLOCG00000017685) rpz6 (ENSLOCG00000017686) ENSLOCG00000017687 ENSLOCG00000017688 ENSLOCG00000017689 rpz2 (ENSLOCG00000017690) ENSLOCG00000017691 ENSLOCG00000008940 ##22 ENSLOCG00000008950 ENSLOCG00000008968 ENSLOCG00000008991 ENSLOCG00000009000 nr2f5 (ENSLOCG00000009006) bola1 (ENSLOCG00000017692) SV2A (ENSLOCG00000009018) sf3b4 (ENSLOCG00000009048) mtmr11 (ENSLOCG00000009056) otud7b (ENSLOCG00000009073) rbm8a (ENSLOCG00000009082) LIX1L (ENSLOCG00000009089) ENSLOCG00000009101 ENSLOCG00000009111 ENSLOCG00000009120 Osteoglossocephalai ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Clupeocephala ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Euteleosteomorpha ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Protacanthopterygii ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Northern pike MODERN SPECIES 13 ZNF532 (ENSELUG00000009808) ENSELUG00000009847 rx3 (ENSELUG00000009868) cplx4a (ENSELUG00000033227) lman1 (ENSELUG00000023663) ccbe1 (ENSELUG00000023738) ENSELUG00000025210 HCN1 (ENSELUG00000023788) ENSELUG00000031169 esm1 (ENSELUG00000005834) ARHGAP24 (ENSELUG00000001657) mapk10 (ENSELUG00000030357) ENSELUG00000029970 ptpn13 (ENSELUG00000020594) sdad1 (ENSELUG00000001699) ENSELUG00000001701 ##22 ENSELUG00000015508 klhl8 (ENSELUG00000015173) ENSELUG00000015132 ENSELUG00000019953 ENSELUG00000007044 ENSELUG00000031248 NUP54 (ENSELUG00000022151) PPEF2 (ENSELUG00000022304) ENSELUG00000026766 SCARB2 (ENSELUG00000022549) ENSELUG00000031045 ENSELUG00000001722 notch1a (ENSELUG00000001725) mier3a (ENSELUG00000001726) SETD9 (ENSELUG00000001727) Acanthomorphata ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Euacanthomorphacea ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Percomorphaceae ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Tiger tail seahorse MODERN SPECIES 353 ldb2a (ENSHCOG00000009547) TAPT1 (ENSHCOG00000009580) prom1a (ENSHCOG00000009634) ENSHCOG00000009642 anxa5a (ENSHCOG00000009931) ccna2 (ENSHCOG00000009956) bbs7 (ENSHCOG00000010044) tmem33 (ENSHCOG00000010094) phox2bb (ENSHCOG00000010125) LIMCH1 (ENSHCOG00000010161) ENSHCOG00000010185 ctsz (ENSHCOG00000010305) ENSHCOG00000010320 nanos1 (ENSHCOG00000010326) dnaaf1 (ENSHCOG00000010341) ENSHCOG00000010354 ##22 Percomorphaceae_B ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Ovalentaria ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Atherinomorphae ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Cyprinodontiformes ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Aplocheiloidei ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Mangrove rivulus DUPLICATION Mangrove rivulus MODERN SPECIES 24 sqlea (ENSKMAG00000001880) rnf144b (ENSKMAG00000001835) ENSKMAG00000001806 atp6v1c1a (ENSKMAG00000001755) azin1a (ENSKMAG00000001732) ENSKMAG00000001692 ubr5 (ENSKMAG00000001452) ENSKMAG00000001420 LAPTM4B (ENSKMAG00000001399) MATN2 (ENSKMAG00000001389) ENSKMAG00000001378 rida (ENSKMAG00000001365) POP1 (ENSKMAG00000001346) NIPAL2 (ENSKMAG00000001326) KCNS2 (ENSKMAG00000001318) ENSKMAG00000001313 ##22 osr2 (ENSKMAG00000001273) VPS13B (ENSKMAG00000000961) ENSKMAG00000000808 FBXO43 (ENSKMAG00000000766) ENSKMAG00000000753 rnf19a (ENSKMAG00000000690) pabpc1a (ENSKMAG00000000605) ENSKMAG00000000559 ZNF706 (ENSKMAG00000000533) grhl2a (ENSKMAG00000000522) ncalda (ENSKMAG00000000498) id4 (ENSKMAG00000000493) cep76 (ENSKMAG00000000418) ptpn2a (ENSKMAG00000000396) seh1l (ENSKMAG00000000335) Mangrove rivulus MODERN SPECIES 304 si:ch211-202h22.8 (ENSKMAG00000001101) gprc5bb (ENSKMAG00000001159) ENSKMAG00000001176 exosc1 (ENSKMAG00000001202) ENSKMAG00000001259 pi4k2a (ENSKMAG00000001282) ENSKMAG00000001333 ENSKMAG00000001337 ##22 ENSKMAG00000001342 zfyve27 (ENSKMAG00000001361) golga7ba (ENSKMAG00000001385) crtac1a (ENSKMAG00000001409) LOXL4 (ENSKMAG00000001454) tekt4 (ENSKMAG00000001473) ENSKMAG00000001502 ENSKMAG00000001523 METRNL (ENSKMAG00000001537) b3gntl1 (ENSKMAG00000001548) EPN3 (ENSKMAG00000001628) ENSKMAG00000001687 ENSKMAG00000001745 ENSKMAG00000001753 ENSKMAG00000001765 Cyprinodontoidei ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Poeciliinae ANCESTRAL SPECIES 7 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00630000089884.B ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 ENSGT00940000158081.o.a ENSGT00940000153593.f ENSGT00940000177177 ENSGT00940000153593.e.a ENSGT00940000159994 ENSGT00940000165866 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.sd.a ##21 ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00940000154457.b ##22 ENSGT00940000159478.f ENSGT00940000158174.a ENSGT00940000156757 ENSGT00390000018061 ENSGT00390000006565.b ENSGT00390000002390.a ENSGT01040000240503.A.a.b ENSGT00940000160899 ENSGT00940000159007 ENSGT00390000000259.k.b ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000154967.b.b.a Platyfish DUPLICATION Platyfish DUPLICATION Platyfish MODERN SPECIES 23 homer3b (ENSXMAG00000002567) ddx49 (ENSXMAG00000002554) ENSXMAG00000027740 upf1 (ENSXMAG00000002540) PGPEP1 (ENSXMAG00000002532) lsm4 (ENSXMAG00000026672) JUND (ENSXMAG00000020084) RAB3A (ENSXMAG00000023647) mpv17l2 (ENSXMAG00000002525) ENSXMAG00000002505 ENSXMAG00000002502 PIK3R2 (ENSXMAG00000002484) kank3 (ENSXMAG00000027105) ENSXMAG00000023978 ##22 ENSXMAG00000012367 ##21 ENSXMAG00000024306 ##22 ENSXMAG00000028256 ENSXMAG00000002467 GPR52 (ENSXMAG00000020082) RABGAP1L (ENSXMAG00000002461) axdnd1 (ENSXMAG00000017981) nphs2 (ENSXMAG00000026766) ENSXMAG00000026146 fam163ab (ENSXMAG00000002457) crb1 (ENSXMAG00000002447) DENND1B (ENSXMAG00000002440) si:dkey-121a9.3 (ENSXMAG00000026577) lhx9 (ENSXMAG00000022237) nek7 (ENSXMAG00000025287) PTPRC (ENSXMAG00000002421) ABHD8 (ENSXMAG00000021422) Platyfish MODERN SPECIES 23 ENSXMAG00000002502 ENSXMAG00000002505 mpv17l2 (ENSXMAG00000002525) RAB3A (ENSXMAG00000023647) JUND (ENSXMAG00000020084) lsm4 (ENSXMAG00000026672) PGPEP1 (ENSXMAG00000002532) upf1 (ENSXMAG00000002540) ENSXMAG00000027740 ddx49 (ENSXMAG00000002554) homer3b (ENSXMAG00000002567) uba52 (ENSXMAG00000003913) arrdc2 (ENSXMAG00000025940) ENSXMAG00000003928 ENSXMAG00000009348 ##21 ENSXMAG00000019731 ##22 ANGPTL4 (ENSXMAG00000002569) dpp9 (ENSXMAG00000002573) dazap1 (ENSXMAG00000002593) gamt (ENSXMAG00000002603) ndufs7 (ENSXMAG00000002609) ENSXMAG00000027190 ENSXMAG00000002617 ARID3A (ENSXMAG00000002619) slc35e1 (ENSXMAG00000024820) MED26 (ENSXMAG00000002623) pex11g (ENSXMAG00000002624) APBA3 (ENSXMAG00000002626) ABCA7 (ENSXMAG00000002629) r3hdm4 (ENSXMAG00000022875) cfh (ENSXMAG00000002685) Platyfish MODERN SPECIES 23 arrdc2 (ENSXMAG00000025940) uba52 (ENSXMAG00000003913) homer3b (ENSXMAG00000002567) ddx49 (ENSXMAG00000002554) ENSXMAG00000027740 upf1 (ENSXMAG00000002540) PGPEP1 (ENSXMAG00000002532) lsm4 (ENSXMAG00000026672) JUND (ENSXMAG00000020084) RAB3A (ENSXMAG00000023647) mpv17l2 (ENSXMAG00000002525) ENSXMAG00000002505 ENSXMAG00000002502 PIK3R2 (ENSXMAG00000002484) kank3 (ENSXMAG00000027105) ENSXMAG00000023978 ##22 ENSXMAG00000012367 ##21 ENSXMAG00000024306 ##22 ENSXMAG00000028256 ENSXMAG00000002467 GPR52 (ENSXMAG00000020082) RABGAP1L (ENSXMAG00000002461) axdnd1 (ENSXMAG00000017981) nphs2 (ENSXMAG00000026766) ENSXMAG00000026146 fam163ab (ENSXMAG00000002457) crb1 (ENSXMAG00000002447) DENND1B (ENSXMAG00000002440) si:dkey-121a9.3 (ENSXMAG00000026577) lhx9 (ENSXMAG00000022237) nek7 (ENSXMAG00000025287) Poecilia ANCESTRAL SPECIES 1 ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00630000089884.B ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 ENSGT00940000158081.o.a ENSGT00940000153593.f ENSGT00940000177177 ENSGT00940000159994 ENSGT00940000165866 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.sd.a ##21 ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00940000154457.b ##22 ENSGT00940000159478.f ENSGT00940000158174.a ENSGT00940000156757 ENSGT00390000018061 ENSGT00390000006565.b ENSGT00390000002390.a ENSGT01040000240503.A.a.b ENSGT00940000160899 ENSGT00940000159007 ENSGT00390000000259.k.b ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000154967.b.b.a Guppy DUPLICATION Guppy MODERN SPECIES 456 ENSPREG00000011422 mpv17l2 (ENSPREG00000011417) RAB3A (ENSPREG00000011395) JUND (ENSPREG00000011387) ENSPREG00000011317 lsm4 (ENSPREG00000011290) PGPEP1 (ENSPREG00000011279) upf1 (ENSPREG00000011247) ddx49 (ENSPREG00000011214) homer3b (ENSPREG00000011192) uba52 (ENSPREG00000011185) ENSPREG00000011175 arrdc2 (ENSPREG00000011165) ENSPREG00000011120 ENSPREG00000011116 ##21 ENSPREG00000011106 ##22 ANGPTL4 (ENSPREG00000011092) dpp9 (ENSPREG00000011073) dazap1 (ENSPREG00000011049) gamt (ENSPREG00000011023) ndufs7 (ENSPREG00000011008) ENSPREG00000010972 ARID3A (ENSPREG00000010913) slc35e1 (ENSPREG00000010887) MED26 (ENSPREG00000010880) pex11g (ENSPREG00000010839) APBA3 (ENSPREG00000010808) ABCA7 (ENSPREG00000010725) r3hdm4 (ENSPREG00000010709) ENSPREG00000010643 b3galt2 (ENSPREG00000010630) Guppy MODERN SPECIES 456 homer3b (ENSPREG00000011192) ddx49 (ENSPREG00000011214) upf1 (ENSPREG00000011247) PGPEP1 (ENSPREG00000011279) lsm4 (ENSPREG00000011290) ENSPREG00000011317 JUND (ENSPREG00000011387) RAB3A (ENSPREG00000011395) mpv17l2 (ENSPREG00000011417) ENSPREG00000011422 ENSPREG00000011477 ENSPREG00000011729 PIK3R2 (ENSPREG00000011739) kank3 (ENSPREG00000011759) ENSPREG00000011776 ENSPREG00000011784 ##22 ENSPREG00000011802 ##21 ENSPREG00000011808 ENSPREG00000011822 ENSPREG00000011848 ENSPREG00000011892 RABGAP1L (ENSPREG00000011996) axdnd1 (ENSPREG00000012102) nphs2 (ENSPREG00000012128) ENSPREG00000012178 fam163ab (ENSPREG00000012226) crb1 (ENSPREG00000012238) DENND1B (ENSPREG00000012284) lhx9 (ENSPREG00000012325) nek7 (ENSPREG00000012353) ENSPREG00000012402 NAME_6 ANCESTRAL SPECIES 133 ENSGT00940000153593.e.a ENSGT00940000153593.f ENSGT00940000158081.o.a ENSGT00730000111231 ENSGT00940000157413.g ENSGT00390000015368.a.a.d ENSGT00610000086173 ENSGT00630000089884.B ENSGT00940000162806.b.b ENSGT00940000158959.a.a ENSGT00940000160620 ENSGT00940000164492.a.b ENSGT00940000164804.b ENSGT00940000157050.i.b ENSGT00940000154886.a.a ENSGT00940000154457.b ##22 ENSGT00940000163581.f.a.d.a.b ENSGT00940000163581.f.a.d.a.a ENSGT00940000163581.f.a.c.c Sailfin molly DUPLICATION Sailfin molly MODERN SPECIES 540 foxl2b (ENSPLAG00000010630) mrps22 (ENSPLAG00000010624) COPB2 (ENSPLAG00000010604) ENSPLAG00000010535 ##22 rbp2a (ENSPLAG00000010528) lpar5b (ENSPLAG00000010518) Sailfin molly DUPLICATION Sailfin molly MODERN SPECIES 118 ENSPLAG00000016332 ENSPLAG00000000787 RAB3A (ENSPLAG00000016314) JUND (ENSPLAG00000016304) ENSPLAG00000016286 lsm4 (ENSPLAG00000016267) PGPEP1 (ENSPLAG00000016254) upf1 (ENSPLAG00000016232) ddx49 (ENSPLAG00000016185) homer3b (ENSPLAG00000000368) uba52 (ENSPLAG00000016141) arrdc2 (ENSPLAG00000016132) ENSPLAG00000016119 ENSPLAG00000016109 ##22 ANGPTL4 (ENSPLAG00000016099) dpp9 (ENSPLAG00000016085) Sailfin molly MODERN SPECIES 1861 ENSPLAG00000001293 kank3 (ENSPLAG00000001297) ENSPLAG00000001298 ##22 ENSPLAG00000001301 ENSPLAG00000001304 ENSPLAG00000001307 ENSPLAG00000001310 Ovalentaria_B ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Cichlidae ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Pseudocrenilabrinae ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Nile tilapia MODERN SPECIES 12 SLC26A9 (ENSONIG00000016651) PLXNA2 (ENSONIG00000016645) ENSONIG00000029443 ENSONIG00000016642 ENSONIG00000041342 ENSONIG00000034489 ptpn22 (ENSONIG00000016638) ENSONIG00000016636 MAGI3 (ENSONIG00000016631) tmem269 (ENSONIG00000035267) ENSONIG00000037895 tmem269 (ENSONIG00000016626) HSPG2 (ENSONIG00000016621) agmat (ENSONIG00000016620) ENSONIG00000014870 tuba4l (ENSONIG00000020575) ##22 pink1 (ENSONIG00000016617) ENSONIG00000016616 ENSONIG00000027184 ENSONIG00000028570 fam43b (ENSONIG00000016610) mul1b (ENSONIG00000016609) VWA5B1 (ENSONIG00000016606) ENSONIG00000029292 ddx19a (ENSONIG00000016602) ubxn10 (ENSONIG00000016605) cptp (ENSONIG00000034471) ints11 (ENSONIG00000016600) ENSONIG00000021136 ENSONIG00000027999 ACAP3 (ENSONIG00000016597) Pseudocrenilabrinae_A ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Haplochromini ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Burton s mouthbrooder MODERN SPECIES 295 igfbp6b (ENSHBUG00000009215) #8 ENSHBUG00000009199 #9 gpr182 (ENSHBUG00000009183) #10 ENSHBUG00000009175 #11 agap2 (ENSHBUG00000009155) #12 tspan31 (ENSHBUG00000009087) MARCHF9 (ENSHBUG00000009054) #13 SLC11A2 (ENSHBUG00000009034) ctdsp2 (ENSHBUG00000009013) #14 TMBIM6 (ENSHBUG00000008997) #15 ENSHBUG00000008905 #16 kansl2 (ENSHBUG00000008846) ccnt1 (ENSHBUG00000008778) #17 sarnp (ENSHBUG00000008761) #19 pmelb (ENSHBUG00000008735) #20 ENSHBUG00000008396 ##22 ENSHBUG00000008378 jph2 (ENSHBUG00000008354) #24 GDAP1L1 (ENSHBUG00000008314) #25 fitm2 (ENSHBUG00000008287) #26 R3HDML (ENSHBUG00000008280) #27 hnf4a (ENSHBUG00000008252) #28 ttpal (ENSHBUG00000008207) #29 pkig (ENSHBUG00000008181) #30 ada (ENSHBUG00000008168) #32 ccn5 (ENSHBUG00000008122) #33 ENSHBUG00000008073 ENSHBUG00000008058 ENSHBUG00000008047 ENSHBUG00000008031 ENSHBUG00000008021 Percomorphaceae_C ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Eupercaria ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Eupecaria_A ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Eupecaria_B ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Perciformes ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Perciformes_a ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Pike perch MODERN SPECIES 135 ENSSLUG00000024435 blnk (ENSSLUG00000024440) ENSSLUG00000024450 CCNJ (ENSSLUG00000024452) BTAF1 (ENSSLUG00000024588) cpeb3 (ENSSLUG00000025007) marchf5 (ENSSLUG00000025040) ide (ENSSLUG00000025110) kmo (ENSSLUG00000025208) opn3 (ENSSLUG00000025221) cdc42ep3 (ENSSLUG00000002869) ENSSLUG00000002879 cyp1b1 (ENSSLUG00000002893) nanp (ENSSLUG00000002901) polr1b (ENSSLUG00000002941) ENSSLUG00000003055 ##22 ENSSLUG00000003075 ENSSLUG00000003086 ENSSLUG00000003123 ENSSLUG00000003169 ENSSLUG00000003206 ENSSLUG00000003281 ENSSLUG00000003467 ENSSLUG00000003770 ENSSLUG00000003783 Percomorphaceae_D ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Carangaria ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Carangaria_A ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Seriola ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Yellowtail amberjack DUPLICATION Yellowtail amberjack MODERN SPECIES 1580 ENSSLDG00000003553 ##22 Yellowtail amberjack MODERN SPECIES 754 ENSSLDG00000008020 ##22 Yellowtail amberjack MODERN SPECIES 2837 atp2a1 (ENSSLDG00000019193) rabep2 (ENSSLDG00000019170) ENSSLDG00000019145 nudt9 (ENSSLDG00000019125) mapk3 (ENSSLDG00000019094) gdpd3a (ENSSLDG00000019062) ypel3 (ENSSLDG00000019040) ATP6V0C (ENSSLDG00000019025) ENSSLDG00000018112 ##22 spsb3a (ENSSLDG00000017977) mrps34 (ENSSLDG00000017958) Otomorpha ANCESTRAL SPECIES 114 ENSGT00530000063734.b ENSGT00950000183038.a.b.a.h ENSGT00390000010523.d ENSGT00940000164745.i.a ENSGT00950000183167.a.b.b.b ENSGT00940000156832 ENSGT01020000230633 ENSGT00390000006330.a.b ENSGT00940000155637 ENSGT00940000156785 ENSGT00940000161997.b ENSGT01010000222336.b.a.a ENSGT00390000005536 ENSGT00390000003749 ENSGT00940000154457.a.a.a.a ##22 ENSGT00940000154457.b ##22 ENSGT00940000160203 ENSGT00390000015124 ENSGT00390000016940.c.a.b ENSGT00940000158593.a ENSGT00950000183188.A.a.a ##20 ENSGT00940000159517 ENSGT00390000002944 #19 ENSGT00940000166043 ENSGT00940000154971.v ENSGT00530000063607.a #16 ENSGT00390000002215.j ENSGT01050000244940.a.a #15 ENSGT00940000159587 ENSGT01040000240451.a.b.a #14 ENSGT00940000155330.c Clupeiformes ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Atlantic herring MODERN SPECIES 6 esco2 (ENSCHAG00000001678) ccdc25 (ENSCHAG00000001699) SCARA3 (ENSCHAG00000001729) ENSCHAG00000001772 clu (ENSCHAG00000001780) reps1 (ENSCHAG00000001817) cyp39a1 (ENSCHAG00000002056) reps1 (ENSCHAG00000002131) ENSCHAG00000004370 msraa (ENSCHAG00000004405) ift172 (ENSCHAG00000004819) ENSCHAG00000006744 cad (ENSCHAG00000006860) rars2 (ENSCHAG00000010828) slc35a1 (ENSCHAG00000011021) ENSCHAG00000011072 ##22 ENSCHAG00000011113 ENSCHAG00000011155 ENSCHAG00000011232 cfap206 (ENSCHAG00000011261) ENSCHAG00000011302 cfap206 (ENSCHAG00000011314) il20ra (ENSCHAG00000011326) med23 (ENSCHAG00000011470) ENSCHAG00000012566 AKAP7 (ENSCHAG00000012570) EPB41L2 (ENSCHAG00000012618) tmem200a (ENSCHAG00000013292) l3mbtl3 (ENSCHAG00000013306) tmem244 (ENSCHAG00000013629) ARHGAP18 (ENSCHAG00000013657) Otophysi ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Characiphysae ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Channel catfish DUPLICATION Channel catfish MODERN SPECIES 16 cthrc1a (ENSIPUG00000010449) ENSIPUG00000010365 ENSIPUG00000010337 ENSIPUG00000010326 ENSIPUG00000010288 rdm1 (ENSIPUG00000010215) ENSIPUG00000010192 ENSIPUG00000010151 ENSIPUG00000010091 ENSIPUG00000010068 ENSIPUG00000010049 ifnphi1 (ENSIPUG00000010003) ifn (ENSIPUG00000009945) ENSIPUG00000009926 arhgap27 (ENSIPUG00000009791) ENSIPUG00000009771 ##22 ENSIPUG00000009754 ENSIPUG00000009717 ENSIPUG00000009519 tanc2 (ENSIPUG00000009351) CYB561 (ENSIPUG00000009300) HDAC5 (ENSIPUG00000009003) lsm12a (ENSIPUG00000008936) vwa3a (ENSIPUG00000008879) SDR42E2 (ENSIPUG00000008851) CDR2 (ENSIPUG00000008835) mfsd13al (ENSIPUG00000008811) metrnl (ENSIPUG00000008799) znf750 (ENSIPUG00000008767) TBCD (ENSIPUG00000008518) fn3krp (ENSIPUG00000008472) Channel catfish MODERN SPECIES 11 adgrg6 (ENSIPUG00000004665) si:ch211-202p1.5 (ENSIPUG00000004652) Ehd3 (ENSIPUG00000004603) angel2 (ENSIPUG00000004555) galnt14 (ENSIPUG00000004531) FLVCR1 (ENSIPUG00000004495) ENSIPUG00000004482 nsl1 (ENSIPUG00000004470) batf3 (ENSIPUG00000004463) ENSIPUG00000004440 ENSIPUG00000004433 ENSIPUG00000004335 ccdc137 (ENSIPUG00000004315) STRA13 (ENSIPUG00000004295) ENSIPUG00000004270 ##21 ENSIPUG00000004263 ##22 caskin2 (ENSIPUG00000004121) mpv17 (ENSIPUG00000004064) Hlx (ENSIPUG00000004042) naprt (ENSIPUG00000004027) ENSIPUG00000004021 rock2b (ENSIPUG00000003761) kcnf1a (ENSIPUG00000003722) ERH (ENSIPUG00000003713) smek1 (ENSIPUG00000003667) mycn (ENSIPUG00000003659) ddx1 (ENSIPUG00000003494) nbas (ENSIPUG00000003091) Fam84a (ENSIPUG00000003012) SCML4 (ENSIPUG00000003000) Sec63 (ENSIPUG00000002882) Cyprinoidei ANCESTRAL SPECIES 111 ENSGT00740000115534.a.a.fb.b ENSGT00390000004215.a.b.a ENSGT00940000159430 ENSGT00390000012914 ENSGT01030000234623.a.a.a.a.a.d.a ENSGT00940000157144.c.a ENSGT00940000161079 ENSGT00950000182908.B.c.a ENSGT01020000230633 ENSGT00390000006330.a.b ENSGT00940000155637 ENSGT00940000156785 ENSGT00390000005536 ENSGT00390000003749 ENSGT00940000154457.a.a.a.a ##22 ENSGT00940000154457.b ##22 ENSGT00940000160203 ENSGT00390000002944 #19 ENSGT00940000159517 ENSGT00940000158593.a ENSGT00950000183188.A.a.a ##20 Zebrafish MODERN SPECIES 4 ENSDARG00000102319 ENSDARG00000058160 exoc3l4 (ENSDARG00000058180) ENSDARG00000061714 ENSDARG00000108535 AIFM2 (ENSDARG00000077549) ninl (ENSDARG00000098414) gins1 (ENSDARG00000007624) RPS6KA2 (ENSDARG00000028469) rnaset2 (ENSDARG00000036282) ENSDARG00000110698 csmd1a (ENSDARG00000044414) angpt2a (ENSDARG00000014946) mcph1 (ENSDARG00000058372) agpat5 (ENSDARG00000063187) tuba4l (ENSDARG00000074289) ##22 apmap (ENSDARG00000017422) si:zfos-1056e6.1 (ENSDARG00000101651) ppm1g (ENSDARG00000075559) fam120b (ENSDARG00000030804) dld (ENSDARG00000020219) ENSDARG00000101795 phf10 (ENSDARG00000070084) actr2b (ENSDARG00000070076) spred2b (ENSDARG00000008372) ENSDARG00000093874 meis1b (ENSDARG00000012078) ENSDARG00000078166 SLC29A3 (ENSDARG00000077828) abcg2c (ENSDARG00000058574) psap (ENSDARG00000013968) Cyprininae ANCESTRAL SPECIES 175 ENSGT00940000157303.e.b ENSGT00950000183075.a.a.a.a.t ENSGT00910000144630.a ENSGT00940000155310.a.b.b ENSGT01030000234576.D.a.a.b.b ENSGT00390000008403.b ENSGT00940000153766.A.d ENSGT00390000003256 ENSGT00940000164045.b ENSGT00940000160761.g ENSGT00390000001216 ENSGT00390000016927.a ENSGT01030000234620.a.a.a.b.r ENSGT00390000000614.b ENSGT00390000016950.mb.a ENSGT00940000154457.b ##22 ENSGT00940000160203.d ENSGT00940000153954.p.b ENSGT00950000183147.B.j ENSGT00940000160277.h ENSGT00440000039984.a.g ENSGT00940000177578 ENSGT00940000158427.k ENSGT00530000063168.b ENSGT00940000159781.a ENSGT00940000155172.n ENSGT00940000154556.c.b.a.a ENSGT00940000156841.b.a.a ENSGT00940000156327.l.i.b ENSGT00390000009597.c.a ENSGT00940000155172.m Goldfish MODERN SPECIES 31 UBR2 (ENSCARG00000061393) prkn (ENSCARG00000063999) QKI (ENSCARG00000064432) ENSCARG00000064461 ENSCARG00000064475 ncoa4 (ENSCARG00000064498) yipf3 (ENSCARG00000064521) LRRC73 (ENSCARG00000064574) ENSCARG00000064608 DLK2 (ENSCARG00000064613) dnph1 (ENSCARG00000064617) mea1 (ENSCARG00000064621) ppp2r5d (ENSCARG00000064665) ENSCARG00000065862 ENSCARG00000065869 tuba4l (ENSCARG00000065884) ##22 ENSCARG00000065953 SYNDIG1 (ENSCARG00000066665) ENSCARG00000066672 apmap (ENSCARG00000066697) ppm1g (ENSCARG00000066740) fam120b (ENSCARG00000066832) dld (ENSCARG00000066882) ENSCARG00000066936 phf10 (ENSCARG00000066956) actr2b (ENSCARG00000067043) spred2b (ENSCARG00000067122) meis1b (ENSCARG00000067135) ENSCARG00000067186 c1d (ENSCARG00000067192) SLC29A3 (ENSCARG00000067210) Cyprininae_a ANCESTRAL SPECIES 53 ENSGT00950000183075.a.a.a.a.s ENSGT00390000011034.jd ENSGT00940000155310.a.b.a ENSGT00940000172304.a.a ENSGT00390000001094.cb ENSGT00390000008403.a ENSGT00940000153766.A.c.a ENSGT00390000003256.k ENSGT00940000164045.b ENSGT00940000160761.g ENSGT00390000001216 ENSGT00390000016927.a ENSGT01030000234620.a.a.a.b.r ENSGT00390000000614.b ENSGT00390000016950.mb.a ENSGT00940000154457.b ##22 ENSGT00940000160203.d ENSGT00940000153954.p.b ENSGT00950000183147.B.j ENSGT00940000160277.h ENSGT00440000039984.a.g ENSGT00940000177578 ENSGT00940000158427.k ENSGT00530000063168.b ENSGT00940000159781.a ENSGT00940000155172.n ENSGT00940000154556.c.b.a.a ENSGT00940000155172.m ENSGT00940000154556.c.b.a.b ENSGT00940000156841.b.a.a ENSGT00940000156327.l.i.b Common carp reference MODERN SPECIES 48 prkn (ENSCCRG00000048867) ENSCCRG00000076786 ENSCCRG00000072566 ENSCCRG00000076016 ncoa4 (ENSCCRG00000043940) yipf3 (ENSCCRG00000043721) ENSCCRG00000014478 ENSCCRG00000074224 DLK2 (ENSCCRG00000014151) dnph1 (ENSCCRG00000014149) mea1 (ENSCCRG00000014142) ppp2r5d (ENSCCRG00000017599) ENSCCRG00000076445 ENSCCRG00000041623 ENSCCRG00000064864 ENSCCRG00000032904 ##22 ENSCCRG00000006858 SYNDIG1 (ENSCCRG00000009239) ENSCCRG00000066381 apmap (ENSCCRG00000078269) si:zfos-1056e6.1 (ENSCCRG00000066192) ppm1g (ENSCCRG00000038969) fam120b (ENSCCRG00000023850) dld (ENSCCRG00000073129) phf10 (ENSCCRG00000001266) actr2b (ENSCCRG00000029183) spred2b (ENSCCRG00000080175) meis1b (ENSCCRG00000015609) ENSCCRG00000066123 ENSCCRG00000044445 ENSCCRG00000077133 Golden-line barbel DUPLICATION Golden-line barbel MODERN SPECIES 605 ENSSGRG00000001629 ENSSGRG00000001636 slc2a10 (ENSSGRG00000001798) tp53rk (ENSSGRG00000001801) ENSSGRG00000001805 DGKA (ENSSGRG00000001869) ENSSGRG00000002411 cnpy2 (ENSSGRG00000002412) ENSSGRG00000002413 nab2 (ENSSGRG00000002414) ENSSGRG00000002416 ENSSGRG00000002417 mcrs1 (ENSSGRG00000002421) suox (ENSSGRG00000003205) ENSSGRG00000003232 ##22 ENSSGRG00000003865 ##22 prph (ENSSGRG00000003879) Golden-line barbel MODERN SPECIES 696 QKI (ENSSGRG00000011011) ENSSGRG00000011019 ENSSGRG00000011022 ncoa4 (ENSSGRG00000011026) yipf3 (ENSSGRG00000011043) ENSSGRG00000011124 ENSSGRG00000011125 DLK2 (ENSSGRG00000011126) ENSSGRG00000011127 mea1 (ENSSGRG00000011128) ppp2r5d (ENSSGRG00000011173) ENSSGRG00000011621 ENSSGRG00000011624 tuba4l (ENSSGRG00000011625) ##22 ENSSGRG00000011825 ENSSGRG00000012347 SYNDIG1 (ENSSGRG00000012348) ENSSGRG00000012349 apmap (ENSSGRG00000012350) ppm1g (ENSSGRG00000012354) Sarcopterygii ANCESTRAL SPECIES 1128 ENSGT00940000154457.b ##22 ENSGT00950000182825.A.a.b.a.a ##21 Tetrapoda ANCESTRAL SPECIES 5 ENSGT00390000005903 ENSGT00940000157945 ENSGT00940000158317 ENSGT00940000153920.a.a ENSGT00940000158123 ENSGT00940000157638 ENSGT00950000182835.d.b ##34 ENSGT00790000123099 ENSGT00390000011669 ENSGT00940000153969.a ENSGT00950000182994.B.a.b ##36 ENSGT00530000063735.b ENSGT00940000160326 ENSGT00940000155849 ENSGT00950000183165.b.b ENSGT00940000154457.b ##22 ENSGT00390000001702 ENSGT00730000111314 ENSGT01050000244850.B ENSGT00390000000903.a ENSGT00390000001439 ENSGT00940000157992 ENSGT00390000002915 ENSGT00940000153769.E ENSGT00940000160568 ENSGT00390000016313.a.a ENSGT00510000047602 ENSGT00390000002222 ENSGT00940000158082.b ENSGT00940000158082.a.a ENSGT00940000160121 Anura ANCESTRAL SPECIES 5 ENSGT00390000005903 ENSGT00940000157945 ENSGT00940000158317 ENSGT00940000153920.a.a ENSGT00940000158123 ENSGT00940000157638 ENSGT00950000182835.d.b ##34 ENSGT00790000123099 ENSGT00390000011669 ENSGT00940000153969.a ENSGT00950000182994.B.a.b ##36 ENSGT00530000063735.b ENSGT00940000160326 ENSGT00940000155849 ENSGT00950000183165.b.b ENSGT00940000154457.b ##22 ENSGT00390000001702 ENSGT00730000111314 ENSGT01050000244850.B ENSGT00390000000903.a ENSGT00390000001439 ENSGT00940000157992 ENSGT00390000002915 ENSGT00940000153769.E ENSGT00940000166182 ENSGT00940000160568 ENSGT00390000016313.a.a ENSGT00510000047602 ENSGT00940000158082.b ENSGT00390000002222 ENSGT00940000160121 Leishan spiny toad MODERN SPECIES 6 CHCHD3 (ENSLLEG00000006724) ENSLLEG00000006885 ENSLLEG00000006901 ENSLLEG00000006917 ENSLLEG00000006971 ENSLLEG00000007001 ENSLLEG00000007072 ENSLLEG00000007115 ENSLLEG00000007157 PODXL (ENSLLEG00000007177) MKLN1 (ENSLLEG00000007231) ENSLLEG00000007257 ENSLLEG00000007288 ENSLLEG00000007303 ENSLLEG00000007315 ENSLLEG00000007345 ##22 NET1 (ENSLLEG00000007399) ASB13 (ENSLLEG00000007571) TASOR2 (ENSLLEG00000007644) ENSLLEG00000007880 ENSLLEG00000007894 ENSLLEG00000007930 ##36 ENSLLEG00000008109 ANKRD16 (ENSLLEG00000008128) FBH1 (ENSLLEG00000008239) ENSLLEG00000008578 RBM17 (ENSLLEG00000008619) PFKFB3 (ENSLLEG00000008840) ##34 PRKCQ (ENSLLEG00000009410) SFMBT2 (ENSLLEG00000009597) ENSLLEG00000010152 Amniota ANCESTRAL SPECIES 30 ENSGT01050000245365 ENSGT00390000002944 #19 ENSGT00940000161052 ENSGT00390000005536 ENSGT00940000161742 ENSGT00390000001138.a ENSGT00390000012136 ENSGT00940000155969 ENSGT00390000012132 ENSGT00940000160203 ENSGT00940000154457.a.b ##22 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00950000182825.A.a.b.a.b.a.b ##21 ENSGT00950000183165.b.b ENSGT00940000154457.b ##22 ENSGT00390000007809.a ENSGT00940000161132 ENSGT00940000161665 ENSGT00940000156707 ENSGT00950000183019.f.b.a ENSGT00390000016495 ENSGT00940000160329 ENSGT00940000160653 ENSGT00950000183080.a.a ENSGT00940000159521 ENSGT00940000153804.B ENSGT00940000158666 ENSGT00940000155606.b ENSGT00950000182837.b.a ENSGT00940000155687 Mammalia ANCESTRAL SPECIES 82 ENSGT00390000005536 ENSGT00940000161742 ENSGT00390000001138.a ENSGT00390000012136 ENSGT00940000155969 ENSGT00390000012132 ENSGT00940000160203 ENSGT00940000154457.a.b ##22 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b ##21 ENSGT00940000154457.b ##22 ENSGT00390000007809.a ENSGT00940000161132 ENSGT00940000161665 ENSGT00940000156707 ENSGT00950000183019.f.b.a ENSGT00390000016495 ENSGT00940000160329 ENSGT00940000160653 ENSGT00950000183080.a.a ENSGT00940000159521 ENSGT00940000153804.B ENSGT00940000158666 ENSGT00940000155606.b ENSGT00950000182837.b.a ENSGT00940000155687 Theria ANCESTRAL SPECIES 2 ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.b.b ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00940000154457.b ##22 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b Eutheria ANCESTRAL SPECIES 1 ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.b.b ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00940000154457.b ##22 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b Atlantogenata ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Afrotheria ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Tenrec MODERN SPECIES 6421 ENSETEG00000007951 ENSETEG00000007949 ##22 MSANTD4 (ENSETEG00000007947) Boreoeutheria ANCESTRAL SPECIES 6 ENSGT00930000150980.b ENSGT00940000162031 ENSGT00390000005536 ENSGT00940000161742 ENSGT00390000001138.a ENSGT00390000012136 ENSGT00940000155969 ENSGT00390000012132 ENSGT00950000185831 ENSGT00940000160203 ENSGT00940000154457.a.b ##22 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00950000182825.A.a.b.a.b.a.b.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00940000154457.b ##22 ENSGT00390000007809.a ENSGT00940000161132 ENSGT00940000161665 ENSGT00940000156707 ENSGT00950000183019.f.b.a ENSGT00390000016495 ENSGT00940000160329 ENSGT00940000160653 ENSGT00950000183080.a.a ENSGT00560000078683 ENSGT00940000159521 ENSGT00940000153804.B ENSGT00940000158666 ENSGT00940000155606.b ENSGT00950000182837.b.a Euarchontoglires ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Primates ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Haplorrhini ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Simiiformes ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Catarrhini ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Hominoidea ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Gibbon MODERN SPECIES 23 BCDIN3D (ENSNLEG00000017818) NCKAP5L (ENSNLEG00000017819) #16 ENSNLEG00000017820 #15 FMNL3 (ENSNLEG00000017822) ENSNLEG00000026755 ENSNLEG00000017824 ENSNLEG00000033425 ENSNLEG00000018544 MCRS1 (ENSNLEG00000017826) KCNH3 (ENSNLEG00000017827) SPATS2 (ENSNLEG00000017828) DNAJC22 (ENSNLEG00000017829) TROAP (ENSNLEG00000017830) PRPH (ENSNLEG00000017833) ENSNLEG00000028012 ##22 ENSNLEG00000017835 ##22 TUBA1A (ENSNLEG00000032990) ##21 LMBR1L (ENSNLEG00000017843) DHH (ENSNLEG00000017846) RHEBL1 (ENSNLEG00000017847) KMT2D (ENSNLEG00000017849) PRKAG1 (ENSNLEG00000017850) DDN (ENSNLEG00000017854) WNT1 (ENSNLEG00000017855) ENSNLEG00000030793 ENSNLEG00000030380 CCDC65 (ENSNLEG00000017860) FKBP11 (ENSNLEG00000017862) RND1 (ENSNLEG00000028550) DDX23 (ENSNLEG00000017864) CACNB3 (ENSNLEG00000017866) Platyrrhini ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Mas night monkey DUPLICATION Mas night monkey MODERN SPECIES 1376 KCNJ15 (ENSANAG00000019657) ENSANAG00000016826 KCNJ6 (ENSANAG00000037322) DYRK1A (ENSANAG00000025205) ENSANAG00000022579 VPS26C (ENSANAG00000033846) ENSANAG00000021305 ENSANAG00000024896 ENSANAG00000033496 PIGP (ENSANAG00000034997) RIPPLY3 (ENSANAG00000029570) HLCS (ENSANAG00000030482) ENSANAG00000034736 SIM2 (ENSANAG00000038264) ENSANAG00000019825 ENSANAG00000030520 ##22 CHAF1B (ENSANAG00000023285) MORC3 (ENSANAG00000038319) DOP1B (ENSANAG00000029600) CBR3 (ENSANAG00000036438) CBR1 (ENSANAG00000018784) SETD4 (ENSANAG00000034449) RUNX1 (ENSANAG00000029792) CLIC6 (ENSANAG00000022769) RCAN1 (ENSANAG00000034808) SMIM34 (ENSANAG00000030164) SMIM11 (ENSANAG00000030557) MRPS6 (ENSANAG00000022450) ENSANAG00000037787 ITSN1 (ENSANAG00000025399) CRYZL1 (ENSANAG00000038224) Mas night monkey MODERN SPECIES 357 FEV (ENSANAG00000022907) CRYBA2 (ENSANAG00000030100) CFAP65 (ENSANAG00000026544) IHH (ENSANAG00000038500) NHEJ1 (ENSANAG00000034155) SLC23A3 (ENSANAG00000031993) CNPPD1 (ENSANAG00000024334) ENSANAG00000025113 ZFAND2B (ENSANAG00000008091) ABCB6 (ENSANAG00000032665) ATG9A (ENSANAG00000031038) ANKZF1 (ENSANAG00000033345) GLB1L (ENSANAG00000019491) STK16 (ENSANAG00000036764) TUBA4A (ENSANAG00000028048) ENSANAG00000025730 ##22 DNAJB2 (ENSANAG00000028602) PTPRN (ENSANAG00000017363) RESP18 (ENSANAG00000030910) DNPEP (ENSANAG00000024158) DES (ENSANAG00000033968) ENSANAG00000030734 ENSANAG00000008048 SPEGNB (ENSANAG00000031843) ENSANAG00000029858 GMPPA (ENSANAG00000028645) ASIC4 (ENSANAG00000006064) CHPF (ENSANAG00000004341) TMEM198 (ENSANAG00000029525) OBSL1 (ENSANAG00000019893) INHA (ENSANAG00000019591) Euarchontoglires_A ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Glires ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Lagomorpha ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Pika DUPLICATION Pika MODERN SPECIES 8084 ENSOPRG00000007414 ##22 Pika MODERN SPECIES 9223 ENSOPRG00000000398 ##22 Rodentia ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Rodentia_B ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Myomorpha ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Lesser Egyptian jerboa MODERN SPECIES 227 Slitrk2 (ENSJJAG00000011723) ENSJJAG00000013881 ##22 Muroidea ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Muroidea_A ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Cricetidae ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Cricetinae ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Chinese hamster chok1gshd MODERN SPECIES 1 Epha4 (ENSCGRG00001021931) Slc4a3 (ENSCGRG00001022779) Stk11ip (ENSCGRG00001022049) Inha (ENSCGRG00001024171) Obsl1 (ENSCGRG00001024617) Tmem198 (ENSCGRG00001020730) Chpf (ENSCGRG00001022407) Asic4 (ENSCGRG00001022497) Gmppa (ENSCGRG00001021452) Speg (ENSCGRG00001021728) Des (ENSCGRG00001021172) Dnpep (ENSCGRG00001021220) Resp18 (ENSCGRG00001021418) Ptprn (ENSCGRG00001021829) Dnajb2 (ENSCGRG00001020980) ENSCGRG00001024425 ##22 Stk16 (ENSCGRG00001023098) Glb1l (ENSCGRG00001022575) Ankzf1 (ENSCGRG00001003325) Atg9a (ENSCGRG00001020609) Abcb6 (ENSCGRG00001021485) Zfand2b (ENSCGRG00001023088) Retreg2 (ENSCGRG00001020316) Cnppd1 (ENSCGRG00001021884) Slc23a3 (ENSCGRG00001021979) Nhej1 (ENSCGRG00001020270) Ihh (ENSCGRG00001004911) Cfap65 (ENSCGRG00001021271) Cryba2 (ENSCGRG00001020857) Fev (ENSCGRG00001022388) Cdk5r2 (ENSCGRG00001010890) Rodentia_A ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Hystricomorpha ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Hystricomorpha_a ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Hystricomorpha_b ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Long-tailed chinchilla MODERN SPECIES 172 ENSCLAG00000007320 ZSCAN26 (ENSCLAG00000007145) ZSCAN9 (ENSCLAG00000006959) ZKSCAN8 (ENSCLAG00000006077) ENSCLAG00000002954 ENSCLAG00000002900 OR2B6 (ENSCLAG00000002828) ENSCLAG00000017507 ENSCLAG00000017473 H1-5 (ENSCLAG00000017511) ENSCLAG00000017470 ENSCLAG00000017554 ENSCLAG00000002094 PRSS16 (ENSCLAG00000002074) ENSCLAG00000001962 ENSCLAG00000002803 ##22 ENSCLAG00000002610 ENSCLAG00000002521 DUSP22 (ENSCLAG00000004363) IRF4 (ENSCLAG00000004136) EXOC2 (ENSCLAG00000003072) FOXF2 (ENSCLAG00000002746) GMDS (ENSCLAG00000002602) MYLK4 (ENSCLAG00000007226) WRNIP1 (ENSCLAG00000006960) SERPINB1 (ENSCLAG00000008637) ENSCLAG00000007653 ENSCLAG00000007069 ENSCLAG00000002501 ENSCLAG00000002657 SERPINB6 (ENSCLAG00000002474) Degu MODERN SPECIES 134 ENSODEG00000013608 COMMD2 (ENSODEG00000009515) WWTR1 (ENSODEG00000009089) TM4SF4 (ENSODEG00000011934) ENSODEG00000010461 TM4SF1 (ENSODEG00000009469) CP (ENSODEG00000014156) HPS3 (ENSODEG00000009955) ENSODEG00000010130 ENSODEG00000010432 ENSODEG00000009993 MYLK3 (ENSODEG00000010367) ENSODEG00000010804 ENSODEG00000010211 ENSODEG00000012398 ##22 ENSODEG00000011171 KCNH3 (ENSODEG00000010379) MCRS1 (ENSODEG00000010219) ENSODEG00000010921 ENSODEG00000010201 FMNL3 (ENSODEG00000011056) ENSODEG00000010356 TMBIM6 (ENSODEG00000009820) #15 ENSODEG00000019759 NCKAP5L (ENSODEG00000009975) #16 BCDIN3D (ENSODEG00000009705) ENSODEG00000019768 ENSODEG00000010974 ENSODEG00000011097 FAIM2 (ENSODEG00000009571) Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES 3 C9orf24 (ENSHGLG00000010390) MYORG (ENSHGLG00000008520) NUDT2 (ENSHGLG00000007868) KIF24 (ENSHGLG00000017071) UBAP1 (ENSHGLG00000018742) DCAF12 (ENSHGLG00000007936) ENSHGLG00000006217 ENSHGLG00000049530 UBE2R2 (ENSHGLG00000042658) NOL6 (ENSHGLG00000009478) AQP3 (ENSHGLG00000007118) ENSHGLG00000005876 NFX1 (ENSHGLG00000008375) ENSHGLG00000007729 BAG1 (ENSHGLG00000005978) ENSHGLG00000005592 ##22 ENSHGLG00000005508 ENSHGLG00000039089 B4GALT1 (ENSHGLG00000048544) ENSHGLG00000009143 DNAJA1 (ENSHGLG00000006687) APTX (ENSHGLG00000015093) ENSHGLG00000017962 TMEM215 (ENSHGLG00000047322) NDUFB6 (ENSHGLG00000035848) SMIM27 (ENSHGLG00000048743) TOPORS (ENSHGLG00000006485) RIGI (ENSHGLG00000016504) Aco1 (ENSHGLG00000018922) ENSHGLG00000039697 ENSHGLG00000021227 Naked mole-rat female MODERN SPECIES 4 MDGA1 (ENSHGLG00000013546) ENSHGLG00000045275 ENSHGLG00000046458 ENSHGLG00000012947 ENSHGLG00000012443 BTBD9 (ENSHGLG00000017336) ENSHGLG00000041323 Glo1 (ENSHGLG00000049823) DNAH8 (ENSHGLG00000019200) ENSHGLG00000017306 ENSHGLG00000039915 GLP1R (ENSHGLG00000017023) SAYSD1 (ENSHGLG00000017010) KCNK5 (ENSHGLG00000033812) ENSHGLG00000016993 ENSHGLG00000011685 ##22 KIF6 (ENSHGLG00000017182) DAAM2 (ENSHGLG00000017172) MOCS1 (ENSHGLG00000017153) LRFN2 (ENSHGLG00000032699) UNC5CL (ENSHGLG00000017127) TSPO2 (ENSHGLG00000043944) APOBEC2 (ENSHGLG00000017169) OARD1 (ENSHGLG00000038691) NFYA (ENSHGLG00000047559) TREML1 (ENSHGLG00000050484) ENSHGLG00000013285 ENSHGLG00000050475 TREML2 (ENSHGLG00000043090) ENSHGLG00000045434 ENSHGLG00000041889 Naked mole-rat female MODERN SPECIES 20 KCNJ9 (ENSHGLG00000015357) IGSF8 (ENSHGLG00000017599) ATP1A2 (ENSHGLG00000015210) ATP1A4 (ENSHGLG00000018340) CASQ1 (ENSHGLG00000036911) PEA15 (ENSHGLG00000049375) DCAF8 (ENSHGLG00000009593) PEX19 (ENSHGLG00000006365) COPA (ENSHGLG00000011307) NCSTN (ENSHGLG00000007191) NHLH1 (ENSHGLG00000020397) VANGL2 (ENSHGLG00000015020) ENSHGLG00000044874 ENSHGLG00000040731 CD84 (ENSHGLG00000018167) ENSHGLG00000036722 ##22 SLAMF1 (ENSHGLG00000013870) CD48 (ENSHGLG00000016645) ENSHGLG00000046741 CD244 (ENSHGLG00000016536) ENSHGLG00000049342 ENSHGLG00000048048 ENSHGLG00000015520 ENSHGLG00000038623 TSTD1 (ENSHGLG00000035841) USF1 (ENSHGLG00000012402) ARHGAP30 (ENSHGLG00000006495) NECTIN4 (ENSHGLG00000010781) KLHDC9 (ENSHGLG00000008070) PFDN2 (ENSHGLG00000034237) NIT1 (ENSHGLG00000010991) Laurasiatheria ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Eulipotyphla ANCESTRAL SPECIES 89 ENSGT00940000154457.b ##22 ENSGT00550000075037 ENSGT00950000182942.a.b ENSGT00390000005911 ENSGT00390000014839.b ENSGT00940000156160 Hedgehog DUPLICATION Hedgehog DUPLICATION Hedgehog DUPLICATION Hedgehog DUPLICATION Hedgehog DUPLICATION Hedgehog DUPLICATION Hedgehog DUPLICATION Hedgehog MODERN SPECIES 10317 ENSEEUG00000015944 ##22 Hedgehog MODERN SPECIES 15908 ENSEEUG00000015590 ##22 Hedgehog MODERN SPECIES 14853 ENSEEUG00000011867 ##22 Hedgehog DUPLICATION Hedgehog MODERN SPECIES 14176 ENSEEUG00000014305 ##22 Hedgehog MODERN SPECIES 12555 ENSEEUG00000011207 ##22 Hedgehog MODERN SPECIES 12409 ENSEEUG00000013696 ##22 Hedgehog MODERN SPECIES 14110 ENSEEUG00000015593 ##22 Hedgehog DUPLICATION Hedgehog DUPLICATION Hedgehog MODERN SPECIES 15249 ENSEEUG00000005491 ##22 Hedgehog MODERN SPECIES 16787 ENSEEUG00000008901 ##22 Hedgehog MODERN SPECIES 11592 ENSEEUG00000001991 ##22 Hedgehog MODERN SPECIES 14551 ENSEEUG00000010104 ##22 Common shrew MODERN SPECIES 4339 ENSSARG00000013255 ##22 STK16 (ENSSARG00000013252) ENSSARG00000013240 ENSSARG00000013221 Laurasiatheria_a ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Artiodactyla ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Artiodactyla_a ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Artiodactyla_b ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Pecora ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Percora_a ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Siberian musk deer MODERN SPECIES 320 FAIM2 (ENSMMSG00000015530) BCDIN3D (ENSMMSG00000015515) NCKAP5L (ENSMMSG00000015482) #16 TMBIM6 (ENSMMSG00000015448) #15 FMNL3 (ENSMMSG00000015295) PRPF40B (ENSMMSG00000015184) FAM186B (ENSMMSG00000015148) MCRS1 (ENSMMSG00000015080) KCNH3 (ENSMMSG00000015035) SPATS2 (ENSMMSG00000014998) DNAJC22 (ENSMMSG00000014980) C1QL4 (ENSMMSG00000012341) ENSMMSG00000012302 ENSMMSG00000012285 PRPH (ENSMMSG00000012252) ENSMMSG00000012239 ##22 ENSMMSG00000012233 ENSMMSG00000012225 #21 ENSMMSG00000012207 ENSMMSG00000012192 ##21 LMBR1L (ENSMMSG00000012091) DHH (ENSMMSG00000012067) RHEBL1 (ENSMMSG00000012021) KMT2D (ENSMMSG00000011813) PRKAG1 (ENSMMSG00000011683) DDN (ENSMMSG00000011655) WNT1 (ENSMMSG00000011621) WNT10B (ENSMMSG00000011539) ARF3 (ENSMMSG00000011483) FKBP11 (ENSMMSG00000011435) CCDC65 (ENSMMSG00000011417) Bovidae ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Bovinae ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Bos ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Bos_b ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Hybrid Bos Indicus MODERN SPECIES 24 NCKAP5L (ENSBIXG00005018903) #16 TMBIM6 (ENSBIXG00005003088) #15 FMNL3 (ENSBIXG00005019046) PRPF40B (ENSBIXG00005019251) FAM186B (ENSBIXG00005006144) MCRS1 (ENSBIXG00005019376) KCNH3 (ENSBIXG00005019387) ENSBIXG00005003162 DNAJC22 (ENSBIXG00005019439) C1QL4 (ENSBIXG00005019453) TROAP (ENSBIXG00005019486) PRPH (ENSBIXG00005003191) ENSBIXG00005019597 ##21 ENSBIXG00005019629 ##21 ENSBIXG00005003208 ENSBIXG00005019748 ##22 LMBR1L (ENSBIXG00005019839) DHH (ENSBIXG00005019876) RHEBL1 (ENSBIXG00005005865) KMT2D (ENSBIXG00005003303) PRKAG1 (ENSBIXG00005003339) DDN (ENSBIXG00005020214) WNT1 (ENSBIXG00005020242) WNT10B (ENSBIXG00005003396) ENSBIXG00005020272 ENSBIXG00005003404 CCDC65 (ENSBIXG00005020299) ENSBIXG00005020352 RND1 (ENSBIXG00005003441) DDX23 (ENSBIXG00005020544) CACNB3 (ENSBIXG00005007344) Bos_a ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Domestic yak MODERN SPECIES 11 MARCKSL1 (ENSBGRG00000012858) HDAC1 (ENSBGRG00000012575) LCK (ENSBGRG00000012273) FAM167B (ENSBGRG00000012218) ENSBGRG00000012165 EIF3I (ENSBGRG00000011926) TMEM234 (ENSBGRG00000011819) DCDC2B (ENSBGRG00000011717) IQCC (ENSBGRG00000011655) CCDC28B (ENSBGRG00000011550) TXLNA (ENSBGRG00000011469) ENSBGRG00000011364 KPNA6 (ENSBGRG00000011110) TMEM39B (ENSBGRG00000011031) KHDRBS1 (ENSBGRG00000010825) ENSBGRG00000010792 ##22 PTP4A2 (ENSBGRG00000010487) SPOCD1 (ENSBGRG00000010336) ADGRB2 (ENSBGRG00000009144) COL16A1 (ENSBGRG00000008612) PEF1 (ENSBGRG00000008534) HCRTR1 (ENSBGRG00000008440) TINAGL1 (ENSBGRG00000008317) ENSBGRG00000008192 SERINC2 (ENSBGRG00000007968) ENSBGRG00000007937 H-FABP (ENSBGRG00000007849) ENSBGRG00000007511 SNRNP40 (ENSBGRG00000007293) ENSBGRG00000007229 ENSBGRG00000007212 Laurasiatheria_b ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Laurasiatheria_c ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Equus ANCESTRAL SPECIES 16 ENSGT00940000155606.b ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a.t ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00940000154457.b ##22 ENSGT00940000160203 ENSGT00390000012132 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000162031 ENSGT00930000150980.b ENSGT00940000159962 ENSGT01050000244940.a.a #15 ENSGT00530000063607.a #16 ENSGT00940000153993.B ENSGT01050000244890.a.b.b ENSGT00940000160612.d Horse MODERN SPECIES 27 CCNT1 (ENSECAG00000015768) #17 ADCY6 (ENSECAG00000022288) CACNB3 (ENSECAG00000012018) DDX23 (ENSECAG00000016681) RND1 (ENSECAG00000020971) CCDC65 (ENSECAG00000022789) FKBP11 (ENSECAG00000006658) WNT10B (ENSECAG00000008298) WNT1 (ENSECAG00000009064) DDN (ENSECAG00000007971) PRKAG1 (ENSECAG00000011134) KMT2D (ENSECAG00000017946) RHEBL1 (ENSECAG00000001442) DHH (ENSECAG00000010603) LMBR1L (ENSECAG00000011362) ENSECAG00000033690 ##22 TUBA1B (ENSECAG00000059551) ##21 TUBA1A (ENSECAG00000030778) ##21 PRPH (ENSECAG00000010432) TROAP (ENSECAG00000017926) C1QL4 (ENSECAG00000005475) DNAJC22 (ENSECAG00000002744) SPATS2 (ENSECAG00000005508) KCNH3 (ENSECAG00000009934) MCRS1 (ENSECAG00000011683) PRPF40B (ENSECAG00000020691) FAM186B (ENSECAG00000020606) FMNL3 (ENSECAG00000005957) TMBIM6 (ENSECAG00000013149) #15 NCKAP5L (ENSECAG00000019044) #16 BCDIN3D (ENSECAG00000020861) Chiroptera ANCESTRAL SPECIES 11 ENSGT00940000160306 ENSGT00430000031142 ENSGT00940000159207 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a.c.b #22 ENSGT00940000154457.b ##22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00910000146920 ENSGT00940000163812 ENSGT01070000253857 ENSGT00940000157018 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 Megabat MODERN SPECIES 907 DNAJC22 (ENSPVAG00000004650) C1QL4 (ENSPVAG00000004649) TROAP (ENSPVAG00000004648) PRPH (ENSPVAG00000004647) ENSPVAG00000004646 ##22 TUBA1A (ENSPVAG00000004645) ##21 ENSPVAG00000004642 ##22 LMBR1L (ENSPVAG00000004640) DHH (ENSPVAG00000004638) RHEBL1 (ENSPVAG00000004637) KMT2D (ENSPVAG00000004632) PRKAG1 (ENSPVAG00000004631) WNT1 (ENSPVAG00000004629) WNT10B (ENSPVAG00000004628) ARF3 (ENSPVAG00000004626) FKBP11 (ENSPVAG00000004625) CCDC65 (ENSPVAG00000004624) Microchiroptera ANCESTRAL SPECIES 15 ENSGT00430000031142 ENSGT00940000159207 ENSGT00990000213248 ENSGT00390000009940 ENSGT00950000182953.A ENSGT00390000000862 ENSGT00940000162511 ENSGT00940000159648 ENSGT00940000156160 ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00550000075037 ENSGT00950000183165.a ENSGT00940000154457.a.a.c.b #22 ENSGT00940000154457.b ##22 ENSGT00940000160220 ENSGT00940000154095.b.b ENSGT00390000008124 ENSGT00390000003164 ENSGT00940000155522 ENSGT00940000161126 ENSGT00910000146920 ENSGT00940000163812 ENSGT01070000253857 ENSGT00940000157018 ENSGT00940000159052 ENSGT01050000244857.B.b ENSGT00390000016940.c.b ENSGT00940000156702.b ENSGT00390000005935 Greater horseshoe bat MODERN SPECIES 26 CDK5R2 (ENSRFEG00010009228) FEV (ENSRFEG00010009194) CRYBA2 (ENSRFEG00010009131) CFAP65 (ENSRFEG00010008702) IHH (ENSRFEG00010008660) SLC23A3 (ENSRFEG00010008570) CNPPD1 (ENSRFEG00010008485) RETREG2 (ENSRFEG00010008345) ZFAND2B (ENSRFEG00010008179) ABCB6 (ENSRFEG00010007824) ATG9A (ENSRFEG00010007760) ANKZF1 (ENSRFEG00010007709) GLB1L (ENSRFEG00010007619) STK16 (ENSRFEG00010007354) TUBA4A (ENSRFEG00010007280) ENSRFEG00010007228 ##22 DNAJB2 (ENSRFEG00010007160) PTPRN (ENSRFEG00010006943) ENSRFEG00010006845 DNPEP (ENSRFEG00010006604) DES (ENSRFEG00010006491) SPEG (ENSRFEG00010006294) ENSRFEG00010006238 SPEGNB (ENSRFEG00010020488) ENSRFEG00010020472 GMPPA (ENSRFEG00010020415) ACCN4 (ENSRFEG00010020398) CHPF (ENSRFEG00010020341) TMEM198 (ENSRFEG00010020313) OBSL1 (ENSRFEG00010019973) INHA (ENSRFEG00010019889) Carnivora ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Caniformia ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Canidae ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Canis_lupus ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Dingo MODERN SPECIES 329 RND1 (ENSCAFG00020013386) CCDC65 (ENSCAFG00020013387) FKBP11 (ENSCAFG00020013388) ARF3 (ENSCAFG00020013389) WNT10B (ENSCAFG00020013394) WNT1 (ENSCAFG00020013401) DDN (ENSCAFG00020013406) PRKAG1 (ENSCAFG00020013408) ENSCAFG00020013412 RHEBL1 (ENSCAFG00020013417) DHH (ENSCAFG00020013420) LMBR1L (ENSCAFG00020013423) TUBA1B (ENSCAFG00020013431) ##21 TUBA1A (ENSCAFG00020013458) ##21 ENSCAFG00020013474 #21 ENSCAFG00020013475 ##22 PRPH (ENSCAFG00020013478) TROAP (ENSCAFG00020013484) C1QL4 (ENSCAFG00020013495) DNAJC22 (ENSCAFG00020013499) SPATS2 (ENSCAFG00020013500) KCNH3 (ENSCAFG00020013519) MCRS1 (ENSCAFG00020013529) FAM186B (ENSCAFG00020013533) PRPF40B (ENSCAFG00020013555) FMNL3 (ENSCAFG00020013736) ENSCAFG00020014464 #15 NCKAP5L (ENSCAFG00020014476) #16 BCDIN3D (ENSCAFG00020014478) FAIM2 (ENSCAFG00020014479) AQP2 (ENSCAFG00020014482) Caniformia_b ANCESTRAL SPECIES 17 ENSGT00530000063607.a #16 ENSGT01050000244940.a.a #15 ENSGT00940000159962 ENSGT00930000150980.b ENSGT00940000162031 ENSGT00390000005536 ENSGT00940000161742 ENSGT00390000001138.a ENSGT00390000012136 ENSGT00940000155969 ENSGT00390000012132 ENSGT00950000185831 ENSGT00940000160203 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00940000154457.b ##22 ENSGT00390000007809.a ENSGT00940000161132 ENSGT00940000161665 ENSGT00940000156707 ENSGT00950000183019.f.b.a.t ENSGT00390000016495 ENSGT00940000160329 ENSGT00940000160653 ENSGT00950000183080.a.a ENSGT00940000159521 ENSGT00940000153804.B ENSGT00940000158666 ENSGT00940000155606.b ENSGT00950000182837.b.a ENSGT00940000155687 Mustelinae ANCESTRAL SPECIES 33 ENSGT00940000153993.B ENSGT00530000063607.a #16 ENSGT01050000244940.a.a #15 ENSGT00940000159962 ENSGT00930000150980.b ENSGT00940000162031 ENSGT00390000005536 ENSGT00940000161742 ENSGT00390000001138.a ENSGT00390000012136 ENSGT00940000155969 ENSGT00390000012132 ENSGT00940000160203 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##21 ENSGT00940000154457.b ##22 ENSGT00390000007809.a ENSGT00940000161132 ENSGT00940000161665 ENSGT00940000156707 ENSGT00950000183019.f.b.a.t ENSGT00390000016495 ENSGT00940000160329 ENSGT00940000160653 ENSGT00950000183080.a.a ENSGT00940000159521 ENSGT00940000153804.B ENSGT00940000158666 ENSGT00940000155606.b ENSGT00950000182837.b.a ENSGT00940000155687 Ferret DUPLICATION Ferret MODERN SPECIES 450 BCDIN3D (ENSMPUG00000014557) NCKAP5L (ENSMPUG00000014558) #16 TMBIM6 (ENSMPUG00000014563) #15 FMNL3 (ENSMPUG00000014569) PRPF40B (ENSMPUG00000014578) FAM186B (ENSMPUG00000014580) MCRS1 (ENSMPUG00000014582) KCNH3 (ENSMPUG00000014586) SPATS2 (ENSMPUG00000014589) DNAJC22 (ENSMPUG00000014591) C1QL4 (ENSMPUG00000014592) TROAP (ENSMPUG00000014593) ENSMPUG00000014597 PRPH (ENSMPUG00000014605) ENSMPUG00000014608 ##21 ENSMPUG00000014609 ##22 LMBR1L (ENSMPUG00000014618) DHH (ENSMPUG00000014623) RHEBL1 (ENSMPUG00000014627) KMT2D (ENSMPUG00000014629) PRKAG1 (ENSMPUG00000014684) DDN (ENSMPUG00000014720) WNT1 (ENSMPUG00000014724) WNT10B (ENSMPUG00000014727) ARF3 (ENSMPUG00000014730) FKBP11 (ENSMPUG00000014732) CCDC65 (ENSMPUG00000014735) DDX23 (ENSMPUG00000014739) CACNB3 (ENSMPUG00000014745) ADCY6 (ENSMPUG00000014748) CCNT1 (ENSMPUG00000014887) #17 Ferret MODERN SPECIES 179 POGLUT2 (ENSMPUG00000011241) ENSMPUG00000018677 TEX30 (ENSMPUG00000011244) ENSMPUG00000019070 METTL21C (ENSMPUG00000011259) TPP2 (ENSMPUG00000011260) ENSMPUG00000011271 ENSMPUG00000011274 FGF14 (ENSMPUG00000011277) ITGBL1 (ENSMPUG00000011282) NALCN (ENSMPUG00000011289) TMTC4 (ENSMPUG00000011315) ENSMPUG00000011328 GGACT (ENSMPUG00000019072) PCCA (ENSMPUG00000011333) ENSMPUG00000011346 ##22 ZIC2 (ENSMPUG00000011375) ENSMPUG00000011382 CLYBL (ENSMPUG00000011399) TM9SF2 (ENSMPUG00000011406) UBAC2 (ENSMPUG00000011416) GPR183 (ENSMPUG00000019073) GPR18 (ENSMPUG00000019075) DOCK9 (ENSMPUG00000011418) SLC15A1 (ENSMPUG00000011439) STK24 (ENSMPUG00000011586) FARP1 (ENSMPUG00000011591) IPO5 (ENSMPUG00000011735) ENSMPUG00000011742 RAP2A (ENSMPUG00000011746) MBNL2 (ENSMPUG00000011750) Sauria ANCESTRAL SPECIES 25 ENSGT00940000161168 ENSGT00390000002689 ENSGT00940000159891 ENSGT00390000005536 ENSGT00940000161742 ENSGT00390000001138.a ENSGT00390000012136 ENSGT00940000155969 ENSGT00390000012132 ENSGT00940000160203 ENSGT00940000154457.a.b ##22 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00950000182825.A.a.b.a.b.a.a.b #21 ENSGT00950000182825.A.a.b.a.b.a.b ##21 ENSGT00940000154457.b ##22 ENSGT00390000007809.a ENSGT00940000161132 ENSGT00940000161665 ENSGT00940000156707 ENSGT00950000183019.f.b.a ENSGT00390000016495 ENSGT00940000160329 ENSGT00940000160653 ENSGT00950000183080.a.a ENSGT00940000159521 ENSGT00940000153804.B ENSGT00940000158666 ENSGT00940000155606.b ENSGT00950000182837.b.a ENSGT00940000155687 Lepidosauria ANCESTRAL SPECIES ENSGT00940000154457.b ##22 Episquamata DUPLICATION Episquamata DUPLICATION Episquamata ANCESTRAL SPECIES ENSGT00940000154457.b.bb.a ##22 Laterata ANCESTRAL SPECIES ENSGT00940000154457.b.bb.a ##22 Argentine black and white tegu MODERN SPECIES 6 ENSSMRG00000013470 ENSSMRG00000013469 ENSSMRG00000013190 CEP41 (ENSSMRG00000013189) MEST (ENSSMRG00000013188) COPG2 (ENSSMRG00000009559) ENSSMRG00000009522 ##22 NET1 (ENSSMRG00000009518) ENSSMRG00000009516 ENSSMRG00000009510 ASB13 (ENSSMRG00000009481) TASOR2 (ENSSMRG00000009480) GDI2 (ENSSMRG00000009479) ##36 ANKRD16 (ENSSMRG00000009478) FBH1 (ENSSMRG00000009473) ENSSMRG00000009447 ##22 ENSSMRG00000009446 ENSSMRG00000009445 UCN3 (ENSSMRG00000009444) ENSSMRG00000009416 SLC35B4 (ENSSMRG00000009401) LRGUK (ENSSMRG00000009400) ENSSMRG00000009398 EXOC4 (ENSSMRG00000009394) CHCHD3 (ENSSMRG00000009371) ENSSMRG00000009352 ENSSMRG00000009324 PLXNA4 (ENSSMRG00000008206) PODXL (ENSSMRG00000008117) MKLN1 (ENSSMRG00000008098) ENSSMRG00000008044 Toxicofera ANCESTRAL SPECIES ENSGT00940000154457.b.bb.a ##22 Elapidae ANCESTRAL SPECIES ENSGT00940000154457.b.bb.a ##22 Elapidae_a ANCESTRAL SPECIES ENSGT00940000154457.b.bb.a ##22 Acanthophiinae ANCESTRAL SPECIES ENSGT00940000154457.b.bb.a ##22 Eastern brown snake MODERN SPECIES 433 ENSPTXG00000018114 ENSPTXG00000018113 ##22 ENSPTXG00000018112 Episquamata ANCESTRAL SPECIES 3 ENSGT00940000157992 ENSGT00390000002915 ENSGT00940000153769.E ENSGT00940000160568.m ENSGT00960000190056 ENSGT00390000011669 ENSGT00940000153969.a ENSGT00950000182994.B.a.b ##36 ENSGT00530000063735.b ENSGT00940000160326 ENSGT00940000156837.x ENSGT00940000169040 ENSGT00950000182980.a.b.a.a.b ENSGT00940000155849 ENSGT00940000162594 ENSGT00940000154457.b.bb.b ##22 ENSGT00390000016313.a.a ENSGT00510000047602 ENSGT00390000002222 ENSGT00940000158082.b ENSGT00940000168513 ENSGT00940000160121 ENSGT00390000013963 ENSGT00390000016897 ENSGT00940000155977 ENSGT00970000194206 ENSGT00390000006086 ENSGT00390000004852.a.b ENSGT00390000006835 ENSGT00640000091917 ENSGT00400000022095.a Toxicofera ANCESTRAL SPECIES 32 ENSGT00390000001439 ENSGT00940000157992 ENSGT00390000002915 ENSGT00940000153769.E ENSGT00940000160568.m ENSGT00960000190056 ENSGT00390000011669 ENSGT00940000153969.a ENSGT00950000182994.B.a.b.fb ##36 ENSGT00530000063735.b ENSGT00940000160326 ENSGT00940000156837.x ENSGT00940000169040 ENSGT00950000182980.a.b.a.a.b ENSGT00940000155849 ENSGT00940000154457.b.bb.b ##22 ENSGT00390000016313.a.a ENSGT00510000047602 ENSGT00390000002222 ENSGT00940000158082.b ENSGT00940000160121 ENSGT00390000013963 ENSGT00940000155977 ENSGT00970000194206 ENSGT00390000006086 ENSGT00390000004852.a.b ENSGT00390000006835 ENSGT00640000091917 ENSGT00400000022095.a ENSGT00950000182981.b.f.a.f ENSGT00950000182981.b.f.a.e.a Elapidae ANCESTRAL SPECIES 33 ENSGT00390000001702 ENSGT01050000244850.B ENSGT00390000000903.a ENSGT00390000001439.x ENSGT00940000157992 ENSGT00390000002915 ENSGT00390000011669 ENSGT00940000153969.a ENSGT00950000182994.B.a.b.eb ##36 ENSGT00530000063735.b ENSGT00940000160326 ENSGT00940000156837.x ENSGT00940000169040 ENSGT00950000182980.a.b.a.a.b ENSGT00940000155849 ENSGT00940000154457.b.bb.b ##22 ENSGT00390000016313.a.a ENSGT00510000047602 ENSGT00390000002222 ENSGT00940000158082.b ENSGT00940000160121 ENSGT00390000013963 ENSGT00940000155977 ENSGT00970000194206 ENSGT00390000006086 ENSGT00390000004852.a.b ENSGT00390000006835 ENSGT00640000091917 ENSGT00400000022095.a ENSGT00950000182981.b.f.a.e.a ENSGT00940000157206 Elapidae_a ANCESTRAL SPECIES 116 ENSGT00940000153969.a ENSGT00950000182994.B.a.b.eb ##36 ENSGT00530000063735.b ENSGT00940000160326 ENSGT00940000156837.x ENSGT00950000182980.a.b.a.a.b ENSGT00940000169040 ENSGT00940000155849 ENSGT00940000154457.b.bb.b ##22 ENSGT00390000016313.a.a ENSGT00510000047602 ENSGT00390000002222.c ENSGT00940000158082.b ENSGT00940000160121 ENSGT00390000013963 ENSGT00940000155977 ENSGT00970000194206 ENSGT00390000006086 ENSGT00390000004852.a.b ENSGT00390000006835 ENSGT00640000091917 ENSGT00400000022095.a Acanthophiinae ANCESTRAL SPECIES 114 ENSGT00950000182994.B.a.b.eb ##36 ENSGT00530000063735.b ENSGT00940000160326 ENSGT00940000156837.x ENSGT00940000169040 ENSGT00940000155849 ENSGT00940000154457.b.bb.b ##22 ENSGT00390000016313.a.a ENSGT00510000047602 ENSGT00390000002222.c ENSGT00940000158082.b ENSGT00940000160121 ENSGT00390000013963 ENSGT00940000155977 ENSGT00970000194206 ENSGT00390000006086 ENSGT00390000004852.a.b ENSGT00390000006835 ENSGT00640000091917 ENSGT00400000022095.a Eastern brown snake MODERN SPECIES 857 ENSPTXG00000012203 ##22 ENSPTXG00000012204 Blue-lipped sea krait MODERN SPECIES 2296 ENSLLTG00000000134 ##22 COPG2 (ENSLLTG00000000329) MEST (ENSLLTG00000002537) CEP41 (ENSLLTG00000002553) CPA1 (ENSLLTG00000002564) Lizard MODERN SPECIES 1329 ENSACAG00000026695 ENSACAG00000017577 ENSACAG00000017598 ##22 ENSACAG00000017604 Laterata ANCESTRAL SPECIES 50 ENSGT00390000001439 ENSGT00940000157992 ENSGT00390000002915 ENSGT00940000166182 ENSGT00940000160568.m ENSGT00960000190056 ENSGT00390000011669 ENSGT00940000153969.a ENSGT00950000182994.B.a.b ##36 ENSGT00530000063735.b ENSGT00940000160326 ENSGT00940000156837.x ENSGT00940000169040 ENSGT00940000155849 ENSGT00940000162594 ENSGT00940000154457.b.bb.b ##22 ENSGT00390000016313.a.a ENSGT00510000047602 ENSGT00390000002222 ENSGT00940000158082.b ENSGT00940000168513 ENSGT00940000160121 ENSGT00390000013963 ENSGT00390000016897 ENSGT00940000155977 ENSGT00390000006086 ENSGT00390000004852.a.b ENSGT00390000006835 ENSGT00640000091917 ENSGT00400000022095.a ENSGT00950000182981.b.f.a.f Argentine black and white tegu MODERN SPECIES 6 LRGUK (ENSSMRG00000009400) SLC35B4 (ENSSMRG00000009401) ENSSMRG00000009416 UCN3 (ENSSMRG00000009444) ENSSMRG00000009445 ENSSMRG00000009446 ENSSMRG00000009447 ##22 FBH1 (ENSSMRG00000009473) ANKRD16 (ENSSMRG00000009478) GDI2 (ENSSMRG00000009479) ##36 TASOR2 (ENSSMRG00000009480) ASB13 (ENSSMRG00000009481) ENSSMRG00000009510 ENSSMRG00000009516 NET1 (ENSSMRG00000009518) ENSSMRG00000009522 ##22 COPG2 (ENSSMRG00000009559) MEST (ENSSMRG00000013188) CEP41 (ENSSMRG00000013189) ENSSMRG00000013190 ENSSMRG00000013469 ENSSMRG00000013470 CPA2 (ENSSMRG00000013472) TMEM209 (ENSSMRG00000013475) ENSSMRG00000013477 ENSSMRG00000013480 KLHDC10 (ENSSMRG00000013540) ZC3HC1 (ENSSMRG00000013541) UBE2H (ENSSMRG00000013542) NRF1 (ENSSMRG00000013545) SMKR1 (ENSSMRG00000013546) Episquamata ANCESTRAL SPECIES ENSGT00940000154457.b.cb ##22 Toxicofera ANCESTRAL SPECIES ENSGT00940000154457.b.cb ##22 Elapidae ANCESTRAL SPECIES 2 ENSGT00950000183188.A.a #20 ENSGT00940000157144 ENSGT00730000111107 ENSGT00940000158593 ENSGT00390000016940.c.a ENSGT00940000155637 ENSGT00940000161052 ENSGT00390000002944 #19 ENSGT00940000178340 ENSGT00950000183178.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00940000154457.b.cb ##22 ENSGT00940000154457.a.b ##22 ENSGT00940000160203 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000159891.k ENSGT00390000002689 ENSGT00940000161168.p ENSGT00940000161168.o ENSGT00940000156832 ENSGT00730000111057 ENSGT00390000005481 ENSGT00940000158838 Indian cobra DUPLICATION Indian cobra MODERN SPECIES 1 ENSNNAG00000001599 #20 DGKA (ENSNNAG00000001620) PYM1 (ENSNNAG00000001643) MMP19 (ENSNNAG00000001659) ENSNNAG00000001676 ENSNNAG00000001685 DNAJC14 (ENSNNAG00000001700) GDF11 (ENSNNAG00000001718) SARNP (ENSNNAG00000001737) #19 ORMDL2 (ENSNNAG00000001769) RHEBL1 (ENSNNAG00000001965) ENSNNAG00000002019 LMBR1L (ENSNNAG00000002031) TUBA1C (ENSNNAG00000002053) ##21 ENSNNAG00000002086 ##22 ENSNNAG00000002114 ##22 PRPH (ENSNNAG00000002128) C1QL4 (ENSNNAG00000002150) DNAJC22 (ENSNNAG00000002160) SPATS2 (ENSNNAG00000002172) KCNH3 (ENSNNAG00000002194) MCRS1 (ENSNNAG00000002216) ITGA7 (ENSNNAG00000002356) BLOC1S1 (ENSNNAG00000002828) ENSNNAG00000002832 ENSNNAG00000002835 CD63 (ENSNNAG00000002841) ZNF207 (ENSNNAG00000002850) C17orf75 (ENSNNAG00000002864) RHBDL3 (ENSNNAG00000002873) RHOT1 (ENSNNAG00000002896) Indian cobra MODERN SPECIES OBSL1 (ENSNNAG00000000577) TMEM198 (ENSNNAG00000000517) CHPF (ENSNNAG00000000504) ASIC4 (ENSNNAG00000000460) ENSNNAG00000000439 ENSNNAG00000000425 GMPPA (ENSNNAG00000000406) ENSNNAG00000000388 SPEGNB (ENSNNAG00000000381) DES (ENSNNAG00000000266) DNPEP (ENSNNAG00000000255) PTPRN (ENSNNAG00000016384) ENSNNAG00000016357 ENSNNAG00000016349 ENSNNAG00000016345 ##21 ENSNNAG00000016337 ##22 GLB1L (ENSNNAG00000016292) STK16 (ENSNNAG00000016279) ANKZF1 (ENSNNAG00000016257) ATG9A (ENSNNAG00000016226) ABCB6 (ENSNNAG00000016154) ENSNNAG00000016138 ZFAND2B (ENSNNAG00000016122) TTLL4 (ENSNNAG00000016036) ENSNNAG00000016019 ENSNNAG00000016007 ENSNNAG00000015996 CYP27A1 (ENSNNAG00000015982) WNT6 (ENSNNAG00000015967) WNT10A (ENSNNAG00000015947) ENSNNAG00000015938 Elapidae_a ANCESTRAL SPECIES 421 ENSGT00950000182825.A.a.b.b ##21 ENSGT00940000154457.b.cb ##22 Acanthophiinae ANCESTRAL SPECIES 384 ENSGT00950000182825.A.a.b.b ##21 ENSGT00940000154457.b.cb ##22 Eastern brown snake DUPLICATION Eastern brown snake MODERN SPECIES 947 ENSPTXG00000015645 ##22 Eastern brown snake MODERN SPECIES 37 CHPF (ENSPTXG00000007610) ASIC4 (ENSPTXG00000007576) ENSPTXG00000007575 GMPPA (ENSPTXG00000008747) ENSPTXG00000008746 SPEGNB (ENSPTXG00000008745) ENSPTXG00000008743 ENSPTXG00000008742 DES (ENSPTXG00000008741) DNPEP (ENSPTXG00000008738) PTPRN (ENSPTXG00000008736) ENSPTXG00000008733 ENSPTXG00000008732 ENSPTXG00000008731 ENSPTXG00000008730 ##21 ENSPTXG00000008728 ##22 STK16 (ENSPTXG00000008727) GLB1L (ENSPTXG00000008726) ENSPTXG00000008725 ATG9A (ENSPTXG00000008724) ABCB6 (ENSPTXG00000008723) ZFAND2B (ENSPTXG00000008722) TTLL4 (ENSPTXG00000008721) ENSPTXG00000008719 CYP27A1 (ENSPTXG00000008046) WNT6 (ENSPTXG00000008043) WNT10A (ENSPTXG00000008042) ENSPTXG00000008041 CDK5R2 (ENSPTXG00000008040) FEV (ENSPTXG00000008038) CRYBA2 (ENSPTXG00000008037) Archelosauria ANCESTRAL SPECIES 26 ENSGT00940000161168 ENSGT00390000002689 ENSGT00940000159891 ENSGT00390000005536 ENSGT00940000161742 ENSGT00390000001138.a ENSGT00390000012136 ENSGT00940000155969 ENSGT00390000012132 ENSGT00940000160203 ENSGT00940000154457.a.b ##22 ENSGT00940000154457.a.a #22 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00950000182825.A.a.b.a.b.a.b ##21 ENSGT00940000154457.b ##22 ENSGT00390000007809.a ENSGT00940000161132 ENSGT00940000161665 ENSGT00940000156707 ENSGT00950000183019.f.b.a ENSGT00390000016495 ENSGT00940000160329 ENSGT00940000160653 ENSGT00950000183080.a.a ENSGT00940000159521 ENSGT00940000153804.B ENSGT00940000158666 ENSGT00940000155606.b ENSGT00950000182837.b.a ENSGT00940000155687 Cryptodira ANCESTRAL SPECIES 342 ENSGT00950000183165.b.b.p.a ENSGT00940000154457.b ##22 Testudinoidea ANCESTRAL SPECIES 4 ENSGT00940000158123 ENSGT00940000157638 ENSGT00950000182835.d.b ##34 ENSGT00790000123099 ENSGT00390000018872 ENSGT01030000234592.A.b.a ENSGT00390000001702 ENSGT00730000111314 ENSGT01050000244850.B ENSGT00390000000903.a ENSGT00390000001439 ENSGT00940000157992 ENSGT00390000002915 ENSGT00940000160568.m ENSGT00950000183165.b.b.p.b.b ENSGT00940000154457.b ##22 ENSGT00950000183165.b.b.p.b.a ENSGT00940000155849 ENSGT00950000182980.a.b.a.a.b.b ENSGT00950000182980.a.b.a.a.b.a ENSGT00940000160326 ENSGT00530000063735.b ENSGT00950000182994.B.a.b ##36 ENSGT00940000153969.a ENSGT00390000011669 ENSGT00960000189028 ENSGT00390000016313.a.a ENSGT00510000047602 ENSGT00390000002222.e ENSGT00940000158082.b ENSGT00940000168513 Testudinidae ANCESTRAL SPECIES 12 ENSGT00940000153920.a.a ENSGT00940000158123 ENSGT00940000157638 ENSGT00950000182835.d.b ##34 ENSGT00790000123099 ENSGT00390000018872 ENSGT00960000189532 ENSGT01030000234592.A.b.a ENSGT00390000001702 ENSGT01050000244850.B ENSGT00390000000903.a ENSGT00390000001439 ENSGT00390000002915 ENSGT00940000160568.m ENSGT00950000183165.b.b.p.b.b ENSGT00940000154457.b ##22 ENSGT00950000183165.b.b.p.b.a ENSGT00940000155849 ENSGT00950000182980.a.b.a.a.b.b ENSGT00940000160326 ENSGT00530000063735.b ENSGT00950000182994.B.a.b ##36 ENSGT00940000153969.a ENSGT00390000011669 ENSGT00960000189028 ENSGT00390000016313.a.a ENSGT00510000047602 ENSGT00390000002222.e ENSGT00940000158082.b ENSGT00940000168513 ENSGT00940000160121 Goode s thornscrub tortoise MODERN SPECIES ENSGEVG00005004758 SFMBT2 (ENSGEVG00005004815) PRKCQ (ENSGEVG00005004881) PFKFB3 (ENSGEVG00005004931) ##34 RBM17 (ENSGEVG00005005028) ENSGEVG00005005062 ENSGEVG00005005078 MKLN1 (ENSGEVG00005005136) ENSGEVG00005005206 ENSGEVG00005005233 CHCHD3 (ENSGEVG00005005262) EXOC4 (ENSGEVG00005005295) SLC35B4 (ENSGEVG00005005335) UCN3 (ENSGEVG00005005352) ENSGEVG00005005369 ENSGEVG00005005396 ##22 ENSGEVG00005005414 ENSGEVG00005005467 NET1 (ENSGEVG00005005548) CALML3 (ENSGEVG00005005568) ENSGEVG00005005580 ASB13 (ENSGEVG00005005609) TASOR2 (ENSGEVG00005005624) GDI2 (ENSGEVG00005005672) ##36 ANKRD16 (ENSGEVG00005005702) ENSGEVG00005005738 FBH1 (ENSGEVG00005005783) ENSGEVG00005005864 COPG2 (ENSGEVG00005005912) MEST (ENSGEVG00005005959) CEP41 (ENSGEVG00005005997) Abingdon island giant tortoise MODERN SPECIES 2003 ENSCABG00000015306 MEST (ENSCABG00000015375) COPG2 (ENSCABG00000015377) FBH1 (ENSCABG00000015392) ANKRD16 (ENSCABG00000015596) GDI2 (ENSCABG00000015598) ##36 TASOR2 (ENSCABG00000015600) ASB13 (ENSCABG00000015601) ENSCABG00000015602 CALML3 (ENSCABG00000015605) NET1 (ENSCABG00000015617) ENSCABG00000015618 ENSCABG00000015619 ENSCABG00000015620 ENSCABG00000015622 ##22 UCN3 (ENSCABG00000015623) ENSCABG00000015624 ENSCABG00000015625 ENSCABG00000015626 BRD2 (ENSCABG00000015628) ENSCABG00000015631 Archosauria ANCESTRAL SPECIES 6 ENSGT00940000159765 ENSGT00940000158471 ENSGT01090000260005.a.a.a.b.a.b ENSGT00390000005935 ENSGT00940000156702.b ENSGT00390000016940.c.b ENSGT01050000244857.B.b ENSGT00940000159052 ENSGT00940000154610.e.a ENSGT00940000157018 ENSGT00940000161126 ENSGT00940000155522 ENSGT00390000003164 ENSGT00940000154095.b.b ENSGT00940000160220 ENSGT00940000154457.b ##22 ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.b ##21 ENSGT00550000075037 ENSGT00950000182942.a.b ENSGT00390000005911 ENSGT00390000014839.b ENSGT00940000156160 ENSGT00940000159648 ENSGT00940000164110 ENSGT00390000000862 ENSGT00950000182953.A ENSGT01040000242059 ENSGT00390000009940 ENSGT00940000159207 ENSGT00940000160059.a.b Aves ANCESTRAL SPECIES 8 ENSGT00940000159765 ENSGT00940000158471 ENSGT01090000260005.a.a.a.b.a.b ENSGT00390000005935 ENSGT00940000156702.b ENSGT00390000016940.c.b ENSGT01050000244857.B.b ENSGT00940000159052 ENSGT00940000154610.e.a ENSGT00940000157018 ENSGT00940000161126 ENSGT00940000155522 ENSGT00390000003164 ENSGT00940000154095.b.b ENSGT00940000160220 ENSGT00940000154457.b ##22 ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.b ##21 ENSGT00550000075037 ENSGT00950000182942.a.b ENSGT00390000005911 ENSGT00390000014839.b ENSGT00940000156160 ENSGT00940000159648 ENSGT00940000164110 ENSGT00390000000862 ENSGT00950000182953.A ENSGT01040000242059 ENSGT00390000009940 ENSGT00940000159207 ENSGT00940000160059.a.b African ostrich MODERN SPECIES 912 ENSSCUG00000014218 ##21 ENSSCUG00000014220 ##22 Neognathae ANCESTRAL SPECIES 6 ENSGT00940000158471 ENSGT01090000260005.a.a.a.b.a.b ENSGT00390000005935 ENSGT00940000156702.b ENSGT00390000016940.c.b ENSGT01050000244857.B.b ENSGT00940000159052 ENSGT00940000154610.e.a ENSGT00940000157018 ENSGT00940000163418.E ENSGT00940000161126 ENSGT00940000155522 ENSGT00390000003164 ENSGT00940000154095.b.b ENSGT00940000160220 ENSGT00940000154457.b ##22 ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.b ##21 ENSGT00550000075037 ENSGT00950000182942.a.b ENSGT00390000005911 ENSGT00390000014839.b ENSGT00940000156160 ENSGT00940000159648 ENSGT00940000164110 ENSGT00390000000862 ENSGT00950000182953.A ENSGT01040000242059 ENSGT00390000009940 ENSGT00940000159207 ENSGT00940000160059.a.b Neognathae_b DUPLICATION Neognathae_b DUPLICATION Neognathae_b ANCESTRAL SPECIES 7 ENSGT00940000158471 ENSGT01090000260005.a.a.a.b.a.b ENSGT00390000005935 ENSGT00940000156702.b ENSGT00390000016940.c.b ENSGT01050000244857.B.b ENSGT00940000159052 ENSGT00940000154610.e.a ENSGT00940000157018 ENSGT00940000163418.E ENSGT00940000161126 ENSGT00940000155522 ENSGT00390000003164 ENSGT00940000154095.b.b ENSGT00940000160220 ENSGT00940000154457.b.db.a ##22 ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00940000154457.b.eb ##22 ENSGT00550000075037 ENSGT00950000182942.a.b ENSGT00390000005911 ENSGT00390000014839.b ENSGT00940000156160 ENSGT00940000159648 ENSGT00940000164110 ENSGT00390000000862 ENSGT00950000182953.A ENSGT01040000242059 ENSGT00390000009940 ENSGT00940000159207 ENSGT00940000160059.a.b Neognathae_c ANCESTRAL SPECIES 152 ENSGT00940000154457.b.db.a ##22 ENSGT00950000182825.A.a.b.a.a ##21 Golden eagle MODERN SPECIES 22 STK11IP (ENSACCG00020012777) ENSACCG00020012813 INHA (ENSACCG00020012825) OBSL1 (ENSACCG00020012871) TMEM198 (ENSACCG00020012916) CHPF (ENSACCG00020012934) ASIC4 (ENSACCG00020012957) ENSACCG00020012972 GMPPA (ENSACCG00020013017) ENSACCG00020013079 DES (ENSACCG00020013117) DNPEP (ENSACCG00020013334) PTPRN (ENSACCG00020013445) DNAJB2 (ENSACCG00020013500) ENSACCG00020013546 ##21 ENSACCG00020013564 ##22 ENSACCG00020013580 ##21 STK16 (ENSACCG00020013598) GLB1L (ENSACCG00020013621) ANKZF1 (ENSACCG00020013653) ATG9A (ENSACCG00020013685) ABCB6 (ENSACCG00020014210) ZFAND2B (ENSACCG00020000313) ENSACCG00020000334 CNPPD1 (ENSACCG00020000361) NHEJ1 (ENSACCG00020000372) IHH (ENSACCG00020000390) ENSACCG00020000407 CFAP65 (ENSACCG00020000455) ENSACCG00020000487 CRYBA2 (ENSACCG00020000511) Passeriformes ANCESTRAL SPECIES ENSGT00940000154457.b.db.a ##22 Passeriformes_d ANCESTRAL SPECIES ENSGT00940000154457.b.db.a ##22 Passeriformes_g ANCESTRAL SPECIES 9 ENSGT00390000005935 ENSGT00940000156702.b ENSGT00390000016940.c.b ENSGT01050000244857.B.b ENSGT00940000159052 ENSGT00940000165535 ENSGT00940000154610.e.a ENSGT00940000157018 ENSGT00940000163418.E ENSGT00940000161126 ENSGT00940000155522 ENSGT00390000003164 ENSGT00940000154095.b.b ENSGT00940000160220 ENSGT00940000154457.b.eb ##22 ENSGT00940000154457.b.db.a ##22 ENSGT00550000075037 ENSGT00950000182942.a.b ENSGT00390000005911 ENSGT00390000014839.b ENSGT00940000156160 ENSGT00940000159648 ENSGT00940000164110 ENSGT00390000000862 ENSGT00950000182953.A ENSGT00390000009940 ENSGT00940000159207 ENSGT00940000160059.a.b ENSGT00430000031142 ENSGT00940000160306 ENSGT00940000161562 Passeroidea ANCESTRAL SPECIES 8 ENSGT00390000005935 ENSGT00940000156702.b ENSGT00390000016940.c.b ENSGT01050000244857.B.b ENSGT00940000159052 ENSGT00940000165535 ENSGT00940000180086 ENSGT00940000157018 ENSGT00940000163418.E ENSGT00940000163418.A.a.b ENSGT00940000161126 ENSGT00940000155522 ENSGT00390000003164 ENSGT00940000154095.b.b ENSGT00940000160220 ENSGT00940000154457.b.db.a ##22 ENSGT00550000075037 ENSGT00950000182942.a.b ENSGT00390000005911 ENSGT00390000014839.b ENSGT00940000156160 ENSGT00940000159648 ENSGT00940000164110 ENSGT00390000000862 ENSGT00950000182953.A ENSGT00390000009940 ENSGT00940000159207 ENSGT00940000160059.a.b ENSGT00430000031142 ENSGT00940000160306 ENSGT00940000161562 Common canary MODERN SPECIES 8 ENSSCAG00000013765 INHA (ENSSCAG00000013763) OBSL1 (ENSSCAG00000013739) TMEM198 (ENSSCAG00000013726) CHPF (ENSSCAG00000013723) ASIC4 (ENSSCAG00000013718) ENSSCAG00000013714 GMPPA (ENSSCAG00000013702) ENSSCAG00000013690 ENSSCAG00000013680 ENSSCAG00000013675 DES (ENSSCAG00000013672) DNPEP (ENSSCAG00000013664) PTPRN (ENSSCAG00000013556) DNAJB2 (ENSSCAG00000013517) ENSSCAG00000013510 ##22 STK16 (ENSSCAG00000013504) GLB1L (ENSSCAG00000013499) ANKZF1 (ENSSCAG00000013491) ATG9A (ENSSCAG00000013482) ABCB6 (ENSSCAG00000013361) ZFAND2B (ENSSCAG00000013312) ENSSCAG00000013309 CNPPD1 (ENSSCAG00000013298) NHEJ1 (ENSSCAG00000013292) IHH (ENSSCAG00000013282) ENSSCAG00000013275 CFAP65 (ENSSCAG00000013251) CRYBA2 (ENSSCAG00000013238) ENSSCAG00000013230 ENSSCAG00000013228 Neognathae_b ANCESTRAL SPECIES 30 ENSGT00940000155687 ENSGT00950000182837.b.a ENSGT00940000155606.b ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160329 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b ##21 ENSGT00940000154457.b.db.b ##22 ENSGT00950000182825.A.a.b.a.b.a.a.a.b ##21 ENSGT00940000154457.a.a #22 ENSGT00940000160203 ENSGT00940000155969 ENSGT00390000012136 ENSGT00390000001138.a ENSGT00940000161742 ENSGT00390000005536 ENSGT00940000159891 ENSGT00390000002689 ENSGT00940000161168 ENSGT00940000156832 ENSGT00940000156785 ENSGT00940000161052 ENSGT00390000002944 #19 Passeriformes ANCESTRAL SPECIES 32 ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00950000182825.A.a.b.a.b.a.b ##21 ENSGT00940000154457.b.db.b ##22 ENSGT00940000160203 ENSGT00950000182825.A.a.b.a.b.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00390000007809.a ENSGT00940000161132 ENSGT00940000156707 ENSGT00950000183019.f.b.a ENSGT00940000160329 ENSGT00950000183080.a.a ENSGT00940000159521 ENSGT00940000153804.B ENSGT00940000158666 ENSGT00940000155606.b ENSGT00950000182837.b.a ENSGT00940000155687 Passeriformes_d ANCESTRAL SPECIES 33 ENSGT00940000159544 #17 ENSGT00940000155687 ENSGT00950000182837.b.a ENSGT00940000155606.b ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160329 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b ##21 ENSGT00940000154457.b.db.b ##22 ENSGT00950000182825.A.a.b.a.b.a.a.a.b ##21 ENSGT00940000160203 ENSGT00940000160235 ENSGT00940000160065 ENSGT00940000155609 ENSGT00950000183092.a ENSGT00940000161040 ENSGT00390000002762.a.a ENSGT00950000182883.b.a.b ENSGT00940000157899.b ENSGT01080000257420.C.b.a ENSGT00390000006330.a.b ENSGT00390000002174.a ENSGT00940000160660 ENSGT00940000160722 #11 Passeriformes_g ANCESTRAL SPECIES 32 ENSGT00940000159544 #17 ENSGT00940000155687 ENSGT00950000182837.b.a ENSGT00940000155606.b ENSGT00940000158666 ENSGT00940000153804.B ENSGT00940000159521 ENSGT00950000183080.a.a ENSGT00940000160329 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##21 ENSGT00950000182825.A.a.b.a.b.a.b ##21 ENSGT00940000154457.b.db.b ##22 ENSGT00950000182825.A.a.b.a.b.a.a.a.b ##21 ENSGT00940000160203 ENSGT00940000160235 ENSGT00940000160065 ENSGT00940000155609 ENSGT00950000183092.a ENSGT00940000161040 ENSGT00390000002762.a.a ENSGT00950000182883.b.a.b ENSGT01080000257420.C.b.a ENSGT00390000006330.a.b ENSGT00390000002174.a ENSGT00940000160660 ENSGT00940000160722 #11 ENSGT00940000154307.D #10 Passeroidea ANCESTRAL SPECIES 242 ENSGT00950000182825.A.a.b.a.b.a.b ##21 ENSGT00940000154457.b.db.b ##22 Common canary MODERN SPECIES 115 INHBC (ENSSCAG00000013964) ENSSCAG00000013962 PRPH (ENSSCAG00000013956) TUBA1A (ENSSCAG00000013949) ##21 ENSSCAG00000013944 ##22 LMBR1L (ENSSCAG00000013940) DHH (ENSSCAG00000013938) PRKAG1 (ENSSCAG00000013893) WNT1 (ENSSCAG00000013887) ARF3 (ENSSCAG00000013884) FKBP11 (ENSSCAG00000013881) CCDC65 (ENSSCAG00000013877) DDX23 (ENSSCAG00000013869) ADCY6 (ENSSCAG00000013862) CCNT1 (ENSSCAG00000013859) #17 KANSL2 (ENSSCAG00000013845) TMBIM6 (ENSSCAG00000013835) #15 ENSSCAG00000013781 ATG101 (ENSSCAG00000013758) NR4A1 (ENSSCAG00000013740) Neognathae_b ANCESTRAL SPECIES 7 ENSGT00390000005935 ENSGT00940000156702.b ENSGT00390000016940.c.b ENSGT01050000244857.B.b ENSGT00940000159052 ENSGT00940000154610.e.a ENSGT00940000157018 ENSGT00940000163418.E ENSGT00940000161126 ENSGT00940000155522 ENSGT00390000003164 ENSGT00940000154095.b.b ENSGT00940000160220 ENSGT00940000154457.b.db.a ##22 ENSGT00950000182825.A.a.b.a.a ##21 ENSGT00940000154457.b.eb ##22 ENSGT00550000075037 ENSGT00950000182942.a.b ENSGT00390000005911 ENSGT00390000014839.b ENSGT00940000156160 ENSGT00940000159648 ENSGT00940000164110 ENSGT00390000000862 ENSGT00950000182953.A ENSGT01040000242059 ENSGT00390000009940 ENSGT00940000159207 ENSGT00940000160059.a.b ENSGT00430000031142 ENSGT00940000160306 Passeriformes ANCESTRAL SPECIES 6 ENSGT01090000260005.a.a.a.b.a.b ENSGT00390000005935 ENSGT00940000156702.b ENSGT00390000016940.c.b ENSGT01050000244857.B.b ENSGT00940000159052 ENSGT00940000165535 ENSGT00940000154610.e.a ENSGT00940000157018 ENSGT00940000163418.E ENSGT00940000161126 ENSGT00940000155522 ENSGT00390000003164 ENSGT00940000154095.b.b ENSGT00940000160220 ENSGT00940000154457.b.eb ##22 ENSGT00550000075037 ENSGT00950000182942.a.b ENSGT00390000005911 ENSGT00390000014839.b ENSGT00940000156160 ENSGT00940000159648 ENSGT00940000164110 ENSGT00390000000862 ENSGT00950000182953.A ENSGT01040000242059 ENSGT00390000009940 ENSGT00940000159207 ENSGT00940000160059.a.b ENSGT00430000031142 ENSGT00940000160306 Great tit MODERN SPECIES 27 SLC4A3 (ENSPMJG00000019695) STK11IP (ENSPMJG00000019696) ENSPMJG00000019697 INHA (ENSPMJG00000019698) ENSPMJG00000019699 ENSPMJG00000019700 TMEM198 (ENSPMJG00000019701) CHPF (ENSPMJG00000019702) ASIC4 (ENSPMJG00000019703) ENSPMJG00000019704 GMPPA (ENSPMJG00000019705) DES (ENSPMJG00000019707) DNPEP (ENSPMJG00000019708) PTPRN (ENSPMJG00000019709) DNAJB2 (ENSPMJG00000019711) TUBA4B (ENSPMJG00000019712) ##22 STK16 (ENSPMJG00000019713) GLB1L (ENSPMJG00000019714) ANKZF1 (ENSPMJG00000019715) ATG9A (ENSPMJG00000019716) ABCB6 (ENSPMJG00000019717) ZFAND2B (ENSPMJG00000019718) ENSPMJG00000019719 CNPPD1 (ENSPMJG00000019720) SLC23A3 (ENSPMJG00000019721) ENSPMJG00000019722 NHEJ1 (ENSPMJG00000019723) IHH (ENSPMJG00000019724) ENSPMJG00000019725 CFAP65 (ENSPMJG00000019726) CRYBA2 (ENSPMJG00000019728) Passeriformes_d ANCESTRAL SPECIES 8 ENSGT01090000260005.a.a.a.b.a.b ENSGT00390000005935 ENSGT00940000156702.b ENSGT00390000016940.c.b ENSGT01050000244857.B.b ENSGT00940000159052 ENSGT00940000165535 ENSGT00940000154610.e.a ENSGT00940000157018 ENSGT00940000163418.E ENSGT00940000161126 ENSGT00940000155522 ENSGT00390000003164 ENSGT00940000154095.b.b ENSGT00940000160220 ENSGT00940000154457.b.eb ##22 ENSGT00550000075037 ENSGT00950000182942.a.b ENSGT00390000005911 ENSGT00390000014839.b ENSGT00940000156160 ENSGT00940000159648 ENSGT00940000164110 ENSGT00390000000862 ENSGT00950000182953.A ENSGT00390000009940 ENSGT00940000159207 ENSGT00940000160059.a.b ENSGT00430000031142 ENSGT00940000160306 ENSGT00940000161562 Passeriformes_g ANCESTRAL SPECIES 9 ENSGT01090000260005.a.a.a.b.a.b ENSGT00390000005935 ENSGT00940000156702.b ENSGT00390000016940.c.b ENSGT01050000244857.B.b ENSGT00940000159052 ENSGT00940000165535 ENSGT00940000154610.e.a ENSGT00940000157018 ENSGT00940000163418.E ENSGT00940000161126 ENSGT00940000155522 ENSGT00390000003164 ENSGT00940000154095.b.b ENSGT00940000160220 ENSGT00940000154457.b.eb ##22 ENSGT00940000154457.b.db.a ##22 ENSGT00550000075037 ENSGT00950000182942.a.b ENSGT00390000005911 ENSGT00390000014839.b ENSGT00940000156160 ENSGT00940000159648 ENSGT00940000164110 ENSGT00390000000862 ENSGT00950000182953.A ENSGT00390000009940 ENSGT00940000159207 ENSGT00940000160059.a.b ENSGT00430000031142 ENSGT00940000160306 Medium ground finch MODERN SPECIES 1 ENSGFOG00000005189 INHA (ENSGFOG00000005184) OBSL1 (ENSGFOG00000005153) TMEM198 (ENSGFOG00000005142) CHPF (ENSGFOG00000005127) ASIC4 (ENSGFOG00000005103) ENSGFOG00000005096 ENSGFOG00000005086 GMPPA (ENSGFOG00000005053) ENSGFOG00000005035 ENSGFOG00000005027 DES (ENSGFOG00000005017) DNPEP (ENSGFOG00000004988) PTPRN (ENSGFOG00000004311) DNAJB2 (ENSGFOG00000004254) ENSGFOG00000004230 ##22 GLB1L (ENSGFOG00000004178) ANKZF1 (ENSGFOG00000004160) ATG9A (ENSGFOG00000004143) ABCB6 (ENSGFOG00000004131) ZFAND2B (ENSGFOG00000004121) ENSGFOG00000004108 CNPPD1 (ENSGFOG00000004097) ENSGFOG00000004082 NHEJ1 (ENSGFOG00000004070) IHH (ENSGFOG00000004061) ENSGFOG00000004052 CFAP65 (ENSGFOG00000004022) CRYBA2 (ENSGFOG00000004005) FEV (ENSGFOG00000004000) ENSGFOG00000003993 Flycatcher MODERN SPECIES 26 ENSFALG00000004313 ENSFALG00000004307 INHA (ENSFALG00000004305) OBSL1 (ENSFALG00000004302) TMEM198 (ENSFALG00000004299) CHPF (ENSFALG00000004298) ASIC4 (ENSFALG00000004297) ENSFALG00000026019 GMPPA (ENSFALG00000004290) ENSFALG00000004285 ENSFALG00000004263 ENSFALG00000004201 DES (ENSFALG00000004276) ENSFALG00000004268 DNAJB2 (ENSFALG00000004257) ENSFALG00000000219 ##22 GLB1L (ENSFALG00000004237) STK16 (ENSFALG00000027114) ANKZF1 (ENSFALG00000004219) ATG9A (ENSFALG00000004205) ZFAND2B (ENSFALG00000004199) ENSFALG00000025933 CNPPD1 (ENSFALG00000004186) SLC23A3 (ENSFALG00000004181) NHEJ1 (ENSFALG00000004177) IHH (ENSFALG00000023942) ENSFALG00000004173 CFAP65 (ENSFALG00000004169) CRYBA2 (ENSFALG00000004167) FEV (ENSFALG00000028150) ENSFALG00000028569 Galloanserae ANCESTRAL SPECIES 7 ENSGT01090000260005.a.a.a.b.a.b ENSGT00390000005935 ENSGT00940000156702.b ENSGT00390000016940.c.b ENSGT01050000244857.B.b ENSGT01030000234599.a.b ENSGT00940000159052 ENSGT00940000154610.e.a ENSGT00940000157018 ENSGT00940000163418.E ENSGT00940000161126 ENSGT00940000155522 ENSGT00390000003164 ENSGT00940000154095.b.b ENSGT00940000160220 ENSGT00940000154457.b ##22 ENSGT00950000182825.A.a.b.a.b.a.a.a.b ##21 ENSGT00550000075037 ENSGT00950000182942.a.b ENSGT00390000005911 ENSGT00390000014839.b ENSGT00940000156160 ENSGT00940000159648 ENSGT00940000164110 ENSGT00390000000862 ENSGT00950000182953.A ENSGT00390000009940 ENSGT00940000159207 ENSGT00940000160059.a.b ENSGT00430000031142 ENSGT00940000160306 Phasianidae ANCESTRAL SPECIES 8 ENSGT00940000159765 ENSGT00940000158471 ENSGT01090000260005.a.a.a.b.a.b ENSGT00390000005935 ENSGT00940000156702.b ENSGT00390000016940.c.b ENSGT01050000244857.B.b ENSGT00940000159052 ENSGT00940000154610.e.a ENSGT00940000157018 ENSGT00940000161126 ENSGT00940000155522 ENSGT00390000003164 ENSGT00940000154095.b.b ENSGT00940000160220 ENSGT00940000154457.b ##22 ENSGT00950000182825.A.a.b.a.b.a.a.a.b ##21 ENSGT00550000075037 ENSGT00950000182942.a.b ENSGT00390000005911 ENSGT00390000014839.b ENSGT00940000156160 ENSGT00940000159648 ENSGT00940000164110 ENSGT00390000000862 ENSGT00950000182953.A ENSGT00390000009940 ENSGT00940000159207 ENSGT00940000160059.a.b ENSGT00430000031142 ENSGT00940000160306 Phasianidae_b ANCESTRAL SPECIES 8 ENSGT00940000158471 ENSGT01090000260005.a.a.a.b.a.b ENSGT00390000005935 ENSGT00940000156702.b ENSGT00390000016940.c.b ENSGT01050000244857.B.b ENSGT01030000234599.a.b ENSGT00940000159052 ENSGT00940000154610.e.a ENSGT00940000157018 ENSGT00940000163418.E ENSGT00940000155522 ENSGT00390000003164 ENSGT00940000154095.b.b ENSGT00940000160220 ENSGT00940000154457.b ##22 ENSGT00950000182825.A.a.b.a.b.a.a.a.b ##21 ENSGT00550000075037 ENSGT00950000182942.a.b ENSGT00390000005911 ENSGT00390000014839.b ENSGT00940000156160 ENSGT00940000159648 ENSGT00940000164110 ENSGT00390000000862 ENSGT00950000182953.A ENSGT00390000009940 ENSGT00940000159207 ENSGT00940000160059.a.b ENSGT00430000031142 ENSGT00940000160306 Turkey MODERN SPECIES 27 ENSMGAG00000003525 ENSMGAG00000022553 ENSMGAG00000008962 ENSMGAG00000011370 ENSMGAG00000017738 ENSMGAG00000012261 ENSMGAG00000016934 ENSMGAG00000012229 ENSMGAG00000012223 ENSMGAG00000012199 ENSMGAG00000012216 ATG9A (ENSMGAG00000012182) ENSMGAG00000011780 ENSMGAG00000023006 ENSMGAG00000022607 ENSMGAG00000011330 ##22 ENSMGAG00000015921 ENSMGAG00000011332 ENSMGAG00000011310 ENSMGAG00000022959 ENSMGAG00000011275 ENSMGAG00000019235 ENSMGAG00000022783 ENSMGAG00000011237 ENSMGAG00000018505 ENSMGAG00000011242 ENSMGAG00000015918 INHA (ENSMGAG00000011220) ENSMGAG00000011222 TMEM198 (ENSMGAG00000011232) ENSMGAG00000011202 Chicken MODERN SPECIES 36 STK11IP (ENSGALG00010021152) ENSGALG00010021161 INHA (ENSGALG00010021163) OBSL1 (ENSGALG00010021177) TMEM198 (ENSGALG00010021180) CHPF (ENSGALG00010018140) ENSGALG00010018145 ASIC4 (ENSGALG00010018361) ENSGALG00010018168 GMPPA (ENSGALG00010018209) ENSGALG00010018284 DES (ENSGALG00010018306) DNPEP (ENSGALG00010018340) PTPRN (ENSGALG00010021360) DNAJB2 (ENSGALG00010021381) ENSGALG00010021391 ##22 TUBA4A (ENSGALG00010022218) ##21 STK16 (ENSGALG00010021417) GLB1L (ENSGALG00010021421) ANKZF1 (ENSGALG00010021434) ATG9A (ENSGALG00010021444) ABCB6 (ENSGALG00010021465) ZFAND2B (ENSGALG00010021477) ENSGALG00010021480 CNPPD1 (ENSGALG00010021489) SLC23A3 (ENSGALG00010021501) NHEJ1 (ENSGALG00010022224) IHH (ENSGALG00010021505) ENSGALG00010018369 CFAP65 (ENSGALG00010018110) CRYBA2 (ENSGALG00010021198) Anatidae ANCESTRAL SPECIES 104 ENSGT00940000154457.b ##22 ENSGT00390000007809.a ENSGT00940000161132 ENSGT00940000156707 ENSGT00950000183019.f.b.a ENSGT00940000160329 ENSGT00950000183080.a.a ENSGT00940000159521 ENSGT00940000153804.B ENSGT00940000158666 ENSGT00940000155606.b ENSGT00950000182837.b.a Pink-footed goose MODERN SPECIES 114 MSMO1 (ENSABRG00000016509) CPE (ENSABRG00000016514) TLL1 (ENSABRG00000016533) ENSABRG00000016576 SPOCK3 (ENSABRG00000016578) ENSABRG00000016589 ANXA10 (ENSABRG00000016590) ENSABRG00000016598 DDX60 (ENSABRG00000016611) PALLD (ENSABRG00000016648) CBR4 (ENSABRG00000016965) SH3RF1 (ENSABRG00000017004) NEK1 (ENSABRG00000017138) CLCN3 (ENSABRG00000018429) HPF1 (ENSABRG00000019454) ENSABRG00000019461 ##22 MFAP3L (ENSABRG00000019467) AADAT (ENSABRG00000019482) Duck DUPLICATION Duck MODERN SPECIES 2625 ORMDL2 (ENSAPLG00000005682) ENSAPLG00000007746 ##22 GDF11 (ENSAPLG00000015433) ENSAPLG00000021362 MCRS1 (ENSAPLG00000008036) SPATS2 (ENSAPLG00000008110) Duck MODERN SPECIES 1387 ENSAPLG00000027094 ##22 LMBR1L (ENSAPLG00000009662) DHH (ENSAPLG00000022325) KMT2D (ENSAPLG00000029981) PRKAG1 (ENSAPLG00000030970) WNT1 (ENSAPLG00000018831) ENSAPLG00000022799 #17