Vertebrata	ANCESTRAL SPECIES																	ENSGT00530000064050 #22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00530000064050 #22
Euteleostomi	ANCESTRAL SPECIES	150	ENSGT00940000154743.A.b	ENSGT00940000160917	ENSGT00530000063335.B.a.a	ENSGT00390000009464	ENSGT00940000158021	ENSGT00390000003552	ENSGT00390000008892	ENSGT00390000007801	ENSGT00940000159919	ENSGT00940000161355	ENSGT00390000007266	ENSGT00950000182971.B.b	ENSGT00950000182870.a.a.b	ENSGT00940000154703 #20	ENSGT00990000206813	ENSGT00530000064050 #22	ENSGT00960000189065	ENSGT00940000156524 #23
Actinopterygii	ANCESTRAL SPECIES	508													ENSGT00390000006215 #19	ENSGT00940000154703 #20	ENSGT00990000206813	ENSGT00530000064050 #22	ENSGT00960000189065	ENSGT00940000156524 #23
Neopterygii	ANCESTRAL SPECIES	418													ENSGT00390000006215 #19	ENSGT00940000154703 #20	ENSGT00990000206813	ENSGT00530000064050 #22	ENSGT00960000189065	ENSGT00940000156524 #23
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	235	ENSGT00940000158341.b	ENSGT00940000166692	ENSGT01030000234542.b.a.a.a.a	ENSGT00390000014801	ENSGT00940000154371.a.b #12	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000161521	ENSGT00940000167484 #18	ENSGT00390000006215 #19	ENSGT00940000154703 #20	ENSGT00530000064050.a ##22	ENSGT00960000189065	ENSGT00940000156524.a ##23	ENSGT00990000206813	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23
Clupeocephala	ANCESTRAL SPECIES	368							ENSGT00940000154371.a.b #12	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000161521	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT00990000206813	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00940000172009
Euteleosteomorpha	ANCESTRAL SPECIES	59	ENSGT00400000022250 #8	ENSGT00940000155589 #9	ENSGT00390000015769.A	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT01060000249136 #13	ENSGT00990000204777 #14	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT00990000206813	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00390000003062 #25	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT00940000171931	ENSGT00940000154172.b #37
Acanthomorphata	ANCESTRAL SPECIES	9	ENSGT00940000156889 #7	ENSGT00400000022250 #8	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT01060000249136 #13	ENSGT00990000204777 #14	ENSGT00940000154371.a.b #12	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT01100000263515.a.b.a.b.b.k.a.a.a #21	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00390000003062 #25	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT00940000171931	ENSGT00940000154172.b #37
Euacanthomorphacea	ANCESTRAL SPECIES		ENSGT00940000156889 #7	ENSGT00400000022250 #8	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT01060000249136 #13	ENSGT00990000204777 #14	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT01100000263515.a.b.a.b.b.k.a.a.a #21	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00390000003062 #25	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT00940000171931	ENSGT00940000154172.b #37
Percomorphaceae	ANCESTRAL SPECIES		ENSGT00940000156889 #7	ENSGT00400000022250 #8	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT01060000249136 #13	ENSGT00990000204777 #14	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT01100000263515.a.b.a.b.b.k.a.a.a #21	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00390000003062 #25	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01030000234835 #36	ENSGT00940000154172.b #37
Tiger tail seahorse	MODERN SPECIES	411	OSGIN2 (ENSHCOG00000007165) #10	nbn (ENSHCOG00000007189) #11	ENSHCOG00000007206 #12	ENSHCOG00000007214 #15	ENSHCOG00000007231	them4 (ENSHCOG00000007244) #17	ENSHCOG00000007274 #18	ENSHCOG00000007287 #18	ENSHCOG00000007295 #19	pip5k1ab (ENSHCOG00000007342) #20	ENSHCOG00000007353 #21	ENSHCOG00000007359 #21	ENSHCOG00000007363 #21	ENSHCOG00000007368 #21	ENSHCOG00000007372 #21	psmd4b (ENSHCOG00000007395) #22	znf687a (ENSHCOG00000007407) #23	ENSHCOG00000007416 #25	ENSHCOG00000007427 #26	ENSHCOG00000007468 #27
Percomorphaceae_B	ANCESTRAL SPECIES	1	ENSGT00940000156889 #7	ENSGT00400000022250 #8	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT01060000249136 #13	ENSGT00990000204777 #14	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT01100000263515.a.b.a.b.b.k.a.a.a #21	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00390000003062 #25	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01030000234835 #36	ENSGT00940000154172.b #37
Percomorphaceae_C	ANCESTRAL SPECIES	2	ENSGT00400000022250 #8	ENSGT00940000156889 #7	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT00390000015721 #16	ENSGT00990000204777 #14	ENSGT00620000088774 #15	ENSGT01010000230299	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT01100000263515.a.b.a.b.b.k.a.a.a #21	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00390000003062 #25	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01030000234835 #36	ENSGT00940000154172.b #37
Percomorphaceae_D	ANCESTRAL SPECIES	2	ENSGT00940000165993	ENSGT00530000063909.b	ENSGT00400000022250 #8	ENSGT00940000156889 #7	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT01100000263515.a.b.a.b.b.k.a.a.a #21	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00390000003062 #25	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01030000234835 #36	ENSGT00940000154172.b #37
Anabantaria	ANCESTRAL SPECIES	2	ENSGT00940000159175	ENSGT00940000165993	ENSGT00530000063909.b	ENSGT00400000022250 #8	ENSGT00940000156889 #7	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00390000003062 #25	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01030000234835 #36	ENSGT00940000177151
Anabantoidei	ANCESTRAL SPECIES	3	ENSGT00940000159175	ENSGT00940000165993	ENSGT00530000063909.b	ENSGT00400000022250 #8	ENSGT00940000156889 #7	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00990000204777 #14	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00390000003062 #25	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01030000234835 #36	ENSGT00730000111747.a
Climbing perch	MODERN SPECIES	7	rundc3b (ENSATEG00000000412)	slc25a40 (ENSATEG00000000405)	dbf4 (ENSATEG00000000400)	cldn12 (ENSATEG00000028245) #8	ADAM22 (ENSATEG00000000240) #7	gtpbp10 (ENSATEG00000000187) #9	ENSATEG00000025944 #10	nbn (ENSATEG00000000145) #11	ENSATEG00000000084 #14	zgc:174935 (ENSATEG00000000056) #15	si:dkey-87o1.2 (ENSATEG00000023947) #16	them4 (ENSATEG00000023944) #17	ENSATEG00000023938 #18	ENSATEG00000023928 #19	PIP5K1A (ENSATEG00000023914) #20	psmd4b (ENSATEG00000023903) #22	znf687a (ENSATEG00000023874) #23	ENSATEG00000026102 #25	ENSATEG00000023850 #26	ENSATEG00000023828 #27	aqp10a (ENSATEG00000023820) #28	ENSATEG00000023815 #29	ENSATEG00000023802 #30	tuft1a (ENSATEG00000023795) #31	ENSATEG00000023787 #32	ENSATEG00000023782 #33	ENSATEG00000023770 #34	s100t (ENSATEG00000028733) #35	ENSATEG00000023757 #36	pbxip1b (ENSATEG00000023746)	lenep (ENSATEG00000028827)
Siamese fighting fish	MODERN SPECIES	7	crot (ENSBSLG00000024971)	abcb4 (ENSBSLG00000022150)	rundc3b (ENSBSLG00000021838)	slc25a40 (ENSBSLG00000021747)	dbf4 (ENSBSLG00000021712)	cldn12 (ENSBSLG00000021624) #8	ADAM22 (ENSBSLG00000021506) #7	gtpbp10 (ENSBSLG00000021329) #9	OSGIN2 (ENSBSLG00000021253) #10	nbn (ENSBSLG00000021156) #11	ENSBSLG00000021099 #14	ENSBSLG00000021030 #15	ENSBSLG00000020998 #16	them4 (ENSBSLG00000020955) #17	pip5k1ab (ENSBSLG00000020030) #20	psmd4b (ENSBSLG00000019880) #22	ZNF687 (ENSBSLG00000019973) #23	ENSBSLG00000019833 #24	ENSBSLG00000019812 #25	ENSBSLG00000019774 #26	ENSBSLG00000017904 #27	aqp10a (ENSBSLG00000017244) #28	ENSBSLG00000017211 #29	C1orf43 (ENSBSLG00000017200) #30	tuft1a (ENSBSLG00000017133) #31	ENSBSLG00000017011 #32	SHE (ENSBSLG00000016956) #33	CHRNB2 (ENSBSLG00000016930) #34	s100t (ENSBSLG00000016908) #35	ENSBSLG00000016897 #36	ENSBSLG00000016711
Zig-zag eel	MODERN SPECIES	7	rundc3b (ENSMAMG00000012928)	slc25a40 (ENSMAMG00000012969)	dbf4 (ENSMAMG00000013008)	ADAM22 (ENSMAMG00000013024) #7	cldn12 (ENSMAMG00000013088) #8	gtpbp10 (ENSMAMG00000026431) #9	ENSMAMG00000013144 #10	nbn (ENSMAMG00000013175) #11	ENSMAMG00000013214 #12	zgc:174935 (ENSMAMG00000024759) #15	si:dkey-87o1.2 (ENSMAMG00000027302) #16	them4 (ENSMAMG00000013276) #17	ENSMAMG00000013322 #18	ENSMAMG00000013397 #19	PIP5K1A (ENSMAMG00000013410) #20	psmd4b (ENSMAMG00000013459) #22	znf687a (ENSMAMG00000013508) #23	ENSMAMG00000026937 #24	ENSMAMG00000025375 #25	ENSMAMG00000013556 #26	ENSMAMG00000008308	ENSMAMG00000013575 #27	aqp10a (ENSMAMG00000013657) #28	ENSMAMG00000013686 #29	ENSMAMG00000013746 #30	tuft1a (ENSMAMG00000025073) #31	ENSMAMG00000013757 #32	ENSMAMG00000013801 #33	ENSMAMG00000013816 #34	s100t (ENSMAMG00000013861) #35	ENSMAMG00000013894 #36
Carangaria	ANCESTRAL SPECIES	1	ENSGT00940000165993	ENSGT00530000063909.b	ENSGT00400000022250 #8	ENSGT00940000156889 #7	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT01100000263515.a.b.a.b.b.k.a.a.a #21	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00390000003062 #25	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01030000234835 #36	ENSGT00940000154172.b #37
Carangaria_A	ANCESTRAL SPECIES	9	ENSGT00940000165993	ENSGT00530000063909.b	ENSGT00400000022250 #8	ENSGT00940000156889 #7	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT01100000263515.a.b.a.b.b.k.a.a.a #21	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00390000003062 #25	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01030000234835 #36	ENSGT00940000154172.b #37
Seriola	ANCESTRAL SPECIES	78	ENSGT00940000165993	ENSGT00530000063909.b	ENSGT00940000156889 #7	ENSGT00400000022250 #8	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT00990000206813	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00390000003062 #25	ENSGT00940000165521.b #26
Yellowtail amberjack	MODERN SPECIES	2337				ENSSLDG00000015822 #7	gtpbp10 (ENSSLDG00000015773) #9	OSGIN2 (ENSSLDG00000015735) #10	nbn (ENSSLDG00000015711) #11	ENSSLDG00000015698 #12	ENSSLDG00000015672 #15	si:dkey-87o1.2 (ENSSLDG00000015660) #16	them4 (ENSSLDG00000015645) #17	ENSSLDG00000015616 #18	ENSSLDG00000015593 #19	pip5k1ab (ENSSLDG00000015549) #20	ENSSLDG00000015523	psmd4b (ENSSLDG00000015499) #22	znf687a (ENSSLDG00000015438) #23	ENSSLDG00000015390 #24	ENSSLDG00000015376 #25	ENSSLDG00000015325 #26
Greater amberjack	MODERN SPECIES	195	slc25a40 (ENSSDUG00000001878)	dbf4 (ENSSDUG00000001912)	ADAM22 (ENSSDUG00000001941) #7	cldn12 (ENSSDUG00000002011) #8	gtpbp10 (ENSSDUG00000002032) #9	OSGIN2 (ENSSDUG00000002075) #10	nbn (ENSSDUG00000002106) #11	ENSSDUG00000002124 #12	zgc:174935 (ENSSDUG00000002151) #15	si:dkey-87o1.2 (ENSSDUG00000002163) #16	them4 (ENSSDUG00000002172) #17	ENSSDUG00000002185 #18	ENSSDUG00000002213 #19	pip5k1ab (ENSSDUG00000002238) #20	ENSSDUG00000002255	psmd4b (ENSSDUG00000002270) #22	ZNF687 (ENSSDUG00000002301) #23	ENSSDUG00000002312 #25
Barramundi perch	MODERN SPECIES	227	slc25a40 (ENSLCAG00010001848)	dbf4 (ENSLCAG00010001845)	cldn12 (ENSLCAG00010001839) #8	ADAM22 (ENSLCAG00010000863) #7	gtpbp10 (ENSLCAG00010000246) #9	OSGIN2 (ENSLCAG00010000230) #10	nbn (ENSLCAG00010000216) #11	ENSLCAG00010000202 #12	ENSLCAG00010000200 #15	si:dkey-87o1.2 (ENSLCAG00010015038) #16	them4 (ENSLCAG00010015031) #17	ENSLCAG00010015025 #18	ENSLCAG00010015021 #19	pip5k1ab (ENSLCAG00010015012) #20	ENSLCAG00010015004 #21	psmd4b (ENSLCAG00010014928) #22	ZNF687 (ENSLCAG00010014911) #23
Pleuronectoidei	ANCESTRAL SPECIES	3	ENSGT00940000165993	ENSGT00530000063909.b	ENSGT00940000156889 #7	ENSGT00400000022250 #8	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT01100000263515.a.b.a.b.b.k.a.a.a #21	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00390000003062 #25	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01030000234835 #36	ENSGT00940000154172.b #37
Turbot	MODERN SPECIES		slc25a40 (ENSSMAG00000017983)	dbf4 (ENSSMAG00000017966)	cldn12 (ENSSMAG00000024024) #8	ADAM22 (ENSSMAG00000017921) #7	gtpbp10 (ENSSMAG00000017843) #9	ENSSMAG00000017827 #10	nbn (ENSSMAG00000017777) #11	ENSSMAG00000017767 #12	zgc:174935 (ENSSMAG00000021970) #15	si:dkey-87o1.2 (ENSSMAG00000028381) #16	them4 (ENSSMAG00000017713) #17	ENSSMAG00000017620 #18	ENSSMAG00000017560 #19	PIP5K1A (ENSSMAG00000017483) #20	ENSSMAG00000017477 #21	psmd4b (ENSSMAG00000017291) #22	znf687a (ENSSMAG00000017261) #23	ENSSMAG00000025843 #24	ENSSMAG00000025046 #25	ENSSMAG00000017234 #26	ENSSMAG00000017186 #27	aqp10a (ENSSMAG00000017161) #28	ENSSMAG00000017137 #29	ENSSMAG00000017110 #30	tuft1a (ENSSMAG00000027625) #31	ENSSMAG00000016998 #32	ENSSMAG00000030499 #33	ENSSMAG00000016956 #34	s100t (ENSSMAG00000034704) #35	ENSSMAG00000037684 #36	ENSSMAG00000016935
Tongue sole	MODERN SPECIES	4	dbf4 (ENSCSEG00000001813)	ADAM22 (ENSCSEG00000001819) #7	cldn12 (ENSCSEG00000001827) #8	gtpbp10 (ENSCSEG00000001830) #9	OSGIN2 (ENSCSEG00000001845) #10	nbn (ENSCSEG00000001861) #11	ENSCSEG00000001871 #12	ENSCSEG00000001874 #15	ENSCSEG00000001878 #16	ENSCSEG00000001889 #18	pip5k1ab (ENSCSEG00000001913) #20	ENSCSEG00000001929 #21	ENSCSEG00000001939 #21	ENSCSEG00000001947 #21	ENSCSEG00000001950 #21	psmd4b (ENSCSEG00000001952) #22	znf687a (ENSCSEG00000001965) #23	ENSCSEG00000001975 #24	ENSCSEG00000002003 #26	ENSCSEG00000002008	ENSCSEG00000002013 #27	aqp10a (ENSCSEG00000002033) #28	C1orf43 (ENSCSEG00000002038) #30	ENSCSEG00000002053 #29	tuft1a (ENSCSEG00000002057) #31	ENSCSEG00000002061 #32	SHE (ENSCSEG00000002066) #33	CHRNB2 (ENSCSEG00000002067) #34	s100t (ENSCSEG00000002071) #35	ENSCSEG00000002074 #36	s100a11 (ENSCSEG00000002078) #37
Eupercaria	ANCESTRAL SPECIES	1	ENSGT00530000063909.b	ENSGT00400000022250 #8	ENSGT00940000156889 #7	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT00390000015721 #16	ENSGT00620000088774 #15	ENSGT01010000230299	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT01100000263515.a.b.a.b.b.k.a.a.a #21	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00390000003062 #25	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01030000234835 #36	ENSGT00940000154172.b #37
Eupecaria_A	ANCESTRAL SPECIES	2	ENSGT00530000063909.b	ENSGT00400000022250 #8	ENSGT00940000156889 #7	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT00390000015721 #16	ENSGT00620000088774 #15	ENSGT01010000230299	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT01100000263515.a.b.a.b.b.k.a.a.a #21	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00390000003062 #25	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01030000234835 #36	ENSGT00940000154172.b #37
Ballan wrasse	MODERN SPECIES	174	rundc3b (ENSLBEG00000006480)	slc25a40 (ENSLBEG00000006418)	dbf4 (ENSLBEG00000006371)	cldn12 (ENSLBEG00000006318) #8	ADAM22 (ENSLBEG00000006186) #7	gtpbp10 (ENSLBEG00000006127) #9	OSGIN2 (ENSLBEG00000006078) #10	ENSLBEG00000006045 #13	zgc:174935 (ENSLBEG00000006031) #15	si:dkey-87o1.2 (ENSLBEG00000006010) #16	them4 (ENSLBEG00000005992) #17	ENSLBEG00000005939 #18	ENSLBEG00000005876 #19	ENSLBEG00000005863 #21	pip5k1ab (ENSLBEG00000005835) #20	psmd4b (ENSLBEG00000005775) #22	znf687a (ENSLBEG00000005738) #23	ENSLBEG00000005688 #24	ENSLBEG00000005671 #25	ENSLBEG00000005656 #26	ENSLBEG00000005570 #27	aqp10a (ENSLBEG00000005505) #28	ENSLBEG00000005465 #29	C1orf43 (ENSLBEG00000005416) #30	tuft1a (ENSLBEG00000005392) #31	ENSLBEG00000005375 #32	SHE (ENSLBEG00000005361) #33	CHRNB2 (ENSLBEG00000005352) #34	s100t (ENSLBEG00000005335) #35	ENSLBEG00000005321 #36	s100a11 (ENSLBEG00000005309) #37
Eupecaria_B	ANCESTRAL SPECIES	4	ENSGT00940000165993	ENSGT00530000063909.b	ENSGT00400000022250 #8	ENSGT00940000156889 #7	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT01100000263515.a.b.a.b.b.k.a.a.a #21	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00390000003062 #25	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01030000234835 #36	ENSGT00940000154172.b #37
Perciformes	ANCESTRAL SPECIES	3	ENSGT00940000165993	ENSGT00530000063909.b	ENSGT00400000022250 #8	ENSGT00940000156889 #7	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT01100000263515.a.b.a.b.b.k.a.a.a #21	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00390000003062 #25	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01030000234835 #36	ENSGT00940000154172.b #37	ENSGT00730000111747.a
Cottioidei	ANCESTRAL SPECIES	7	ENSGT00940000159175	ENSGT00940000165993	ENSGT00530000063909.b	ENSGT00940000156889 #7	ENSGT00400000022250 #8	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00940000172009	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01030000234835 #36	ENSGT00940000154172.b #37	ENSGT00730000111747.a
Lumpfish	MODERN SPECIES	7	rundc3b (ENSCLMG00005011398)	slc25a40 (ENSCLMG00005011402)	dbf4 (ENSCLMG00005011430)	ADAM22 (ENSCLMG00005011433) #7	cldn12 (ENSCLMG00005011434) #8	gtpbp10 (ENSCLMG00005011438) #9	OSGIN2 (ENSCLMG00005011624) #10	nbn (ENSCLMG00005011626) #11	ENSCLMG00005011627 #12	ENSCLMG00005011628 #15	ENSCLMG00005011629	them4 (ENSCLMG00005011630) #17	ENSCLMG00005011631 #18	ENSCLMG00005011632 #19	pip5k1ab (ENSCLMG00005011635) #20	psmd4b (ENSCLMG00005012156) #22	znf687a (ENSCLMG00005012157) #23	ENSCLMG00005012158	ENSCLMG00005012159 #26	ENSCLMG00005012160 #27	aqp10a (ENSCLMG00005012161) #28	ENSCLMG00005012258 #29	C1orf43 (ENSCLMG00005012259) #30	tuft1a (ENSCLMG00005012260) #31	ENSCLMG00005012261 #32	SHE (ENSCLMG00005012262) #33	CHRNB2 (ENSCLMG00005012263) #34	s100t (ENSCLMG00005012264) #35	ENSCLMG00005012265 #36	s100a11 (ENSCLMG00005012266) #37	ENSCLMG00005012268
Perciformes_a	ANCESTRAL SPECIES	3	ENSGT00940000165993	ENSGT00530000063909.b	ENSGT00400000022250 #8	ENSGT00940000156889 #7	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT01100000263515.a.b.a.b.b.k.a.a.a #21	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00390000003062 #25	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01030000234835 #36	ENSGT00940000154172.b #37	ENSGT00730000111747.a
Pike perch	MODERN SPECIES	15	slc25a40 (ENSSLUG00000003570)	dbf4 (ENSSLUG00000003599)	ADAM22 (ENSSLUG00000004046) #7	cldn12 (ENSSLUG00000010400) #8	gtpbp10 (ENSSLUG00000010420) #9	OSGIN2 (ENSSLUG00000010633) #10	nbn (ENSSLUG00000010647) #11	ENSSLUG00000010654 #12	zgc:174935 (ENSSLUG00000010656) #15	si:dkey-87o1.2 (ENSSLUG00000010660) #16	them4 (ENSSLUG00000010661) #17	ENSSLUG00000010667 #18	ENSSLUG00000010690 #19	pip5k1ab (ENSSLUG00000010721) #20	ENSSLUG00000011011 #21	psmd4b (ENSSLUG00000011032) #22	znf687a (ENSSLUG00000011183) #23	ENSSLUG00000011193 #25	ENSSLUG00000011209 #26	ENSSLUG00000011293 #27	ENSSLUG00000011674 #29	C1orf43 (ENSSLUG00000011690) #30	tuft1a (ENSSLUG00000011695) #31	ENSSLUG00000011703 #32	ENSSLUG00000011708 #33	CHRNB2 (ENSSLUG00000011719) #34	s100t (ENSSLUG00000011791) #35	ENSSLUG00000011797 #36	s100a11 (ENSSLUG00000011804) #37	pbxip1b (ENSSLUG00000011806)	lenep (ENSSLUG00000011815)
Channel bull blenny	MODERN SPECIES	7	cldn12 (ENSCGOG00000010835) #8	ADAM22 (ENSCGOG00000010174) #7	gtpbp10 (ENSCGOG00000010146) #9	OSGIN2 (ENSCGOG00000010144) #10	nbn (ENSCGOG00000010137) #11	ENSCGOG00000010135 #14	ENSCGOG00000010133	ENSCGOG00000010130	ENSCGOG00000010129 #15	ENSCGOG00000010128	them4 (ENSCGOG00000010127) #17	ENSCGOG00000010123 #18	ENSCGOG00000010120 #19	pip5k1ab (ENSCGOG00000009402) #20	ENSCGOG00000009291 #21	psmd4b (ENSCGOG00000009141) #22	znf687a (ENSCGOG00000009133) #23	ENSCGOG00000009129 #25	ENSCGOG00000009118 #26	ENSCGOG00000009030 #27	aqp10a (ENSCGOG00000008642) #28	ENSCGOG00000008632 #29	C1orf43 (ENSCGOG00000008628) #30	tuft1a (ENSCGOG00000008627) #31	ENSCGOG00000008624 #32	SHE (ENSCGOG00000008620) #33	CHRNB2 (ENSCGOG00000008616) #34	s100t (ENSCGOG00000008612) #35	ENSCGOG00000008608 #36	s100a11 (ENSCGOG00000008603) #37	pbxip1b (ENSCGOG00000008590)
Eupecaria_C	ANCESTRAL SPECIES	2	ENSGT00940000165993	ENSGT00530000063909.b	ENSGT00400000022250 #8	ENSGT00940000156889 #7	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT01100000263515.a.b.a.b.b.k.a.a.a #21	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00390000003062 #25	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01030000234835 #36	ENSGT00940000154172.b #37
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	2	ENSGT00940000159175	ENSGT00940000165993	ENSGT00530000063909.b	ENSGT00400000022250 #8	ENSGT00940000156889 #7	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00940000172009	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01030000234835 #36	ENSGT00940000154172.b #37
European seabass	MODERN SPECIES	6	rundc3b (ENSDLAG00005015468)	slc25a40 (ENSDLAG00005015443)	dbf4 (ENSDLAG00005015425)	cldn12 (ENSDLAG00005031461) #8	ADAM22 (ENSDLAG00005014099) #7	gtpbp10 (ENSDLAG00005014063) #9	ENSDLAG00005032125 #10	nbn (ENSDLAG00005014035) #11	ENSDLAG00005014030 #12	si:dkey-87o1.2 (ENSDLAG00005031873) #16	zgc:174935 (ENSDLAG00005027220) #15	them4 (ENSDLAG00005013988) #17	ENSDLAG00005013897 #18	ENSDLAG00005013890 #19	PIP5K1A (ENSDLAG00005013768) #20	psmd4b (ENSDLAG00005013701) #22	znf687a (ENSDLAG00005013693) #23	ENSDLAG00005026684 #24	ENSDLAG00005012816 #27	ENSDLAG00005012540 #29	ENSDLAG00005012533 #30	tuft1a (ENSDLAG00005012514) #31	ENSDLAG00005012474 #32	ENSDLAG00005012461 #33	ENSDLAG00005012441 #34	s100t (ENSDLAG00005028111) #35	ENSDLAG00005012297 #36	ENSDLAG00005029586 #37	pbxip1b (ENSDLAG00005012389)	lenep (ENSDLAG00005031514)	flad1 (ENSDLAG00005012324)
Large yellow croaker	MODERN SPECIES	484	rundc3b (ENSLCRG00005017910)	slc25a40 (ENSLCRG00005017908)	dbf4 (ENSLCRG00005017907)	cldn12 (ENSLCRG00005017906) #8	ADAM22 (ENSLCRG00005014246) #7	gtpbp10 (ENSLCRG00005014209) #9	OSGIN2 (ENSLCRG00005014202) #10	nbn (ENSLCRG00005014197) #11	ENSLCRG00005014194 #12	zgc:174935 (ENSLCRG00005014192) #15	si:dkey-87o1.2 (ENSLCRG00005014189) #16	them4 (ENSLCRG00005014187) #17	ENSLCRG00005014171 #18	ENSLCRG00005014168 #19	pip5k1ab (ENSLCRG00005014153) #20	psmd4b (ENSLCRG00005014122) #22	znf687a (ENSLCRG00005014119) #23	ENSLCRG00005014117 #24	ENSLCRG00005014115	ENSLCRG00005014113 #26	ENSLCRG00005010031 #27	aqp10a (ENSLCRG00005009990) #28	ENSLCRG00005009989 #29	C1orf43 (ENSLCRG00005009988) #30	tuft1a (ENSLCRG00005009986) #31	ENSLCRG00005009981 #32	SHE (ENSLCRG00005009979) #33	CHRNB2 (ENSLCRG00005009978) #34	s100t (ENSLCRG00005009977) #35	ENSLCRG00005009976 #36	s100a11 (ENSLCRG00005009975) #37
Gilthead seabream	MODERN SPECIES	8	slc25a40 (ENSSAUG00010017828)	dbf4 (ENSSAUG00010017829)	ADAM22 (ENSSAUG00010017859) #7	CLDN12 (ENSSAUG00010018077) #8	gtpbp10 (ENSSAUG00010018086) #9	OSGIN2 (ENSSAUG00010018242) #10	nbn (ENSSAUG00010018248) #11	ENSSAUG00010018253 #12	zgc:174935 (ENSSAUG00010018255) #15	si:dkey-87o1.2 (ENSSAUG00010018257) #16	them4 (ENSSAUG00010018258) #17	ENSSAUG00010018260 #18	ENSSAUG00010018266 #19	pip5k1ab (ENSSAUG00010018271) #20	ENSSAUG00010018501 #21	PSMD4 (ENSSAUG00010018503) #22	znf687a (ENSSAUG00010018604) #23	ENSSAUG00010018606 #24	ENSSAUG00010018608 #25	ENSSAUG00010018609 #26	ENSSAUG00010018632 #27	aqp10a (ENSSAUG00010018987) #28	ENSSAUG00010019292 #29	C1orf43 (ENSSAUG00010019293) #30	tuft1a (ENSSAUG00010019296) #31	ENSSAUG00010019298 #32	SHE (ENSSAUG00010019306) #33	CHRNB2 (ENSSAUG00010019309) #34	s100t (ENSSAUG00010019311) #35	ENSSAUG00010019313 #36	s100a11 (ENSSAUG00010019315) #37
Tetraodontidae	ANCESTRAL SPECIES	14	ENSGT00940000159418	ENSGT00940000159175	ENSGT00940000165993	ENSGT00530000063909.b	ENSGT00940000156889 #7	ENSGT00400000022250 #8	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT01100000263515.a.b.a.b.b.k.a.a.a #21	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00390000003062 #25	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01030000234835 #36	ENSGT00730000111747.a
Fugu	MODERN SPECIES	19	ENSTRUG00000027118	rundc3b (ENSTRUG00000005573)	slc25a40 (ENSTRUG00000005070)	ENSTRUG00000002513 #11	ADAM22 (ENSTRUG00000003940) #7	cldn12 (ENSTRUG00000023595) #8	gtpbp10 (ENSTRUG00000021373) #9	OSGIN2 (ENSTRUG00000003218) #10	ENSTRUG00000002484 #12	them4 (ENSTRUG00000002448) #17	ENSTRUG00000001436 #18	ENSTRUG00000025364 #19	pip5k1ab (ENSTRUG00000003020) #20	ENSTRUG00000022000 #21	ENSTRUG00000029153	psmd4b (ENSTRUG00000002109) #22	znf687a (ENSTRUG00000003078) #23	ENSTRUG00000026520 #24	ENSTRUG00000024281	ENSTRUG00000023419 #25	ENSTRUG00000003146 #26	ENSTRUG00000003201 #27	aqp10a (ENSTRUG00000020692) #28	ENSTRUG00000021748 #29	C1orf43 (ENSTRUG00000005154) #30	tuft1a (ENSTRUG00000024871) #31	ENSTRUG00000005390 #32	SHE (ENSTRUG00000005642) #33	CHRNB2 (ENSTRUG00000005762) #34	s100t (ENSTRUG00000026002) #35	ENSTRUG00000027433 #36
Tetraodon	MODERN SPECIES	23	abcb4 (ENSTNIG00000018357)	ENSTNIG00000018356	rundc3b (ENSTNIG00000018355)	slc25a40 (ENSTNIG00000018354)	ENSTNIG00000000239	ADAM22 (ENSTNIG00000018352) #7	cldn12 (ENSTNIG00000018353) #8	gtpbp10 (ENSTNIG00000018351) #9	OSGIN2 (ENSTNIG00000018350) #10	nbn (ENSTNIG00000018349) #11	them4 (ENSTNIG00000018348) #17	ENSTNIG00000018347 #18	ENSTNIG00000018346 #19	pip5k1ab (ENSTNIG00000018345) #20	ENSTNIG00000018344 #21	psmd4b (ENSTNIG00000018343) #22	znf687a (ENSTNIG00000018342) #23	ENSTNIG00000001801 #26	ENSTNIG00000018341 #27	aqp10a (ENSTNIG00000018340) #28	ENSTNIG00000001192 #29	aqp10a (ENSTNIG00000018339) #28	ENSTNIG00000018338 #29	C1orf43 (ENSTNIG00000018337) #30	tuft1a (ENSTNIG00000018336) #31	ENSTNIG00000018335 #32	SHE (ENSTNIG00000018334) #33	CHRNB2 (ENSTNIG00000018333) #34	s100t (ENSTNIG00000001647) #35	ENSTNIG00000018332	SHC1 (ENSTNIG00000018331)
Ovalentaria	ANCESTRAL SPECIES	3	ENSGT00940000156889 #7	ENSGT00400000022250 #8	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT01060000249136 #13	ENSGT00990000204777 #14	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT01100000263515.a.b.a.b.b.k.a.a.a #21	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00390000003062 #25	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01030000234835 #36	ENSGT00940000154172.b #37
Atherinomorphae	ANCESTRAL SPECIES		ENSGT00940000159175	ENSGT00940000165993	ENSGT00530000063909.b	ENSGT00400000022250 #8	ENSGT00940000156889 #7	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00390000003062 #25	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01030000234835 #36	ENSGT00940000154172.b #37
Cyprinodontiformes	ANCESTRAL SPECIES		ENSGT00940000159175	ENSGT00940000165993	ENSGT00530000063909.b	ENSGT00400000022250 #8	ENSGT00940000156889 #7	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00940000172009	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01030000234835 #36	ENSGT00940000154172.b #37
Aplocheiloidei	ANCESTRAL SPECIES	2	ENSGT00940000159175	ENSGT00940000165993	ENSGT00530000063909.b	ENSGT00940000156889 #7	ENSGT00400000022250 #8	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00940000172009	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01030000234835 #36	ENSGT00940000177151
Mangrove rivulus	MODERN SPECIES	81	rundc3b (ENSKMAG00000003730)	slc25a40 (ENSKMAG00000003711)	dbf4 (ENSKMAG00000003693)	cldn12 (ENSKMAG00000003676) #8	ADAM22 (ENSKMAG00000003511) #7	gtpbp10 (ENSKMAG00000003426) #9	OSGIN2 (ENSKMAG00000003387) #10	nbn (ENSKMAG00000003366) #11	ENSKMAG00000003355 #12	zgc:174935 (ENSKMAG00000003346) #15	si:dkey-87o1.2 (ENSKMAG00000003334) #16	them4 (ENSKMAG00000003312) #17	ENSKMAG00000003272 #18	ENSKMAG00000003242 #19	pip5k1ab (ENSKMAG00000003193) #20	psmd4b (ENSKMAG00000003147) #22	znf687a (ENSKMAG00000003107) #23	ENSKMAG00000003075	ENSKMAG00000003045 #26	ENSKMAG00000002933 #27	aqp10a (ENSKMAG00000002870) #28	ENSKMAG00000002859 #29	C1orf43 (ENSKMAG00000002844) #30	tuft1a (ENSKMAG00000002782) #31	ENSKMAG00000002734 #32	SHE (ENSKMAG00000002704) #33	CHRNB2 (ENSKMAG00000002690) #34	s100t (ENSKMAG00000002670) #35	ENSKMAG00000002661 #36	ENSKMAG00000002637	pbxip1b (ENSKMAG00000002607)
Turquoise killifish	MODERN SPECIES	1614	SLC25A40 (ENSNFUG00015009427)	dbf4 (ENSNFUG00015009498)	ADAM22 (ENSNFUG00015009625) #7	cldn12 (ENSNFUG00015010526) #8	gtpbp10 (ENSNFUG00015010534) #9	OSGIN2 (ENSNFUG00015010546) #10	NBN (ENSNFUG00015010554) #11	ENSNFUG00015010584 #12	ENSNFUG00015010594 #15	si:dkey-87o1.2 (ENSNFUG00015010596) #16	them4 (ENSNFUG00015010606) #17	ENSNFUG00015010618	ENSNFUG00015010629 #18	ECM1 (ENSNFUG00015010644) #19	PIP5K1AB (ENSNFUG00015010674) #20	PSMD4B (ENSNFUG00015010860) #22	znf687a (ENSNFUG00015011161) #23	ENSNFUG00015011182 #24	ENSNFUG00015011198	ENSNFUG00015011381	ENSNFUG00015011403	TEX10 (ENSNFUG00015011434)	erp44 (ENSNFUG00015011707)	STX17 (ENSNFUG00015011773)	nr4a3 (ENSNFUG00015011781)	sec61b (ENSNFUG00015011800)	alg2 (ENSNFUG00015011807)	FRRS1L (ENSNFUG00015011821)	TMEM245 (ENSNFUG00015011830)	GALNT1 (ENSNFUG00015011912)	INO80C (ENSNFUG00015012120)
Cyprinodontoidei	ANCESTRAL SPECIES		ENSGT00940000159175	ENSGT00940000165993	ENSGT00530000063909.b	ENSGT00400000022250 #8	ENSGT00940000156889 #7	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00940000172009	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B.c #28	ENSGT00940000164368.B.d #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01030000234835 #36
Poeciliinae	ANCESTRAL SPECIES		ENSGT00940000159175	ENSGT00940000165993	ENSGT00530000063909.b	ENSGT00940000156889 #7	ENSGT00400000022250 #8	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00940000172009	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B.c #28	ENSGT00940000164368.B.d #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT00940000154172.b #37
Poecilia	ANCESTRAL SPECIES		ENSGT00940000159175	ENSGT00940000165993	ENSGT00530000063909.b	ENSGT00400000022250 #8	ENSGT00940000156889 #7	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00940000172009	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B.c #28	ENSGT00940000164368.B.d #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01100000265170
NAME_6	ANCESTRAL SPECIES	36	ENSGT00530000063909.b	ENSGT00940000161847.b.a.e.a.b.c.a.b.b.a	ENSGT00950000183127.c.b.d.a.a.a.a.l.b	ENSGT00400000022250 #8	ENSGT00940000156889 #7	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000182089	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00940000172009	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B.c #28	ENSGT00940000164368.B.d #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01100000265170
Sailfin molly	MODERN SPECIES	2318												ENSPLAG00000004692	ENSPLAG00000004718 #18	ENSPLAG00000004741 #19	pip5k1ab (ENSPLAG00000004769) #20	psmd4b (ENSPLAG00000004803) #22	ZNF687 (ENSPLAG00000004811) #23
Amazon molly	MODERN SPECIES	328	ABCB1 (ENSPFOG00000016540)	rundc3b (ENSPFOG00000016478)	slc25a40 (ENSPFOG00000016449)	dbf4 (ENSPFOG00000016439)	ENSPFOG00000016425	ENSPFOG00000016398	cldn12 (ENSPFOG00000016391) #8	ADAM22 (ENSPFOG00000016101) #7	gtpbp10 (ENSPFOG00000016036) #9	OSGIN2 (ENSPFOG00000016003) #10	nbn (ENSPFOG00000015939) #11	ENSPFOG00000015925 #12	ENSPFOG00000015880 #18	ENSPFOG00000015876 #19	pip5k1ab (ENSPFOG00000023667) #20	psmd4b (ENSPFOG00000023412) #22	znf687a (ENSPFOG00000015791) #23	ENSPFOG00000015764 #24	ENSPFOG00000015758	ENSPFOG00000015757 #26	ENSPFOG00000015524 #27	aqp10a (ENSPFOG00000023904) #28	aqp10a (ENSPFOG00000015450) #28	ENSPFOG00000024372 #29	C1orf43 (ENSPFOG00000015420) #30	tuft1a (ENSPFOG00000015374) #31	ENSPFOG00000015274 #32	SHE (ENSPFOG00000015248) #33	CHRNB2 (ENSPFOG00000015219) #34	s100t (ENSPFOG00000015212) #35	pbxip1b (ENSPFOG00000015187)
Guppy	MODERN SPECIES	446	slc25a40 (ENSPREG00000016117)	dbf4 (ENSPREG00000016139)	ENSPREG00000016187 #24	ADAM22 (ENSPREG00000016306) #7	cldn12 (ENSPREG00000016372) #8	gtpbp10 (ENSPREG00000016393) #9	OSGIN2 (ENSPREG00000016427) #10	nbn (ENSPREG00000016450) #11	ENSPREG00000016465 #12	ENSPREG00000016487 #15	si:dkey-87o1.2 (ENSPREG00000016499) #16	them4 (ENSPREG00000016511) #17	ENSPREG00000016519 #18	ENSPREG00000016548 #19	pip5k1ab (ENSPREG00000016572) #20	psmd4b (ENSPREG00000016628) #22	znf687a (ENSPREG00000016654) #23	ENSPREG00000016675	ENSPREG00000016686 #26	ENSPREG00000016733 #27	aqp10a (ENSPREG00000016859) #28	aqp10a (ENSPREG00000016869) #28	ENSPREG00000016882 #29	C1orf43 (ENSPREG00000016893) #30	tuft1a (ENSPREG00000016908) #31	ENSPREG00000016930 #32	SHE (ENSPREG00000016960) #33	CHRNB2 (ENSPREG00000016997) #34	s100t (ENSPREG00000017006) #35	ENSPREG00000017012	s100a11 (ENSPREG00000017025) #37
Platyfish	MODERN SPECIES	17	rundc3b (ENSXMAG00000006834)	slc25a40 (ENSXMAG00000006851)	dbf4 (ENSXMAG00000006880)	ADAM22 (ENSXMAG00000025519) #7	cldn12 (ENSXMAG00000025324) #8	gtpbp10 (ENSXMAG00000006881) #9	OSGIN2 (ENSXMAG00000026466) #10	nbn (ENSXMAG00000006954) #11	ENSXMAG00000024275 #12	ENSXMAG00000025183 #15	si:dkey-87o1.2 (ENSXMAG00000028452) #16	them4 (ENSXMAG00000006994) #17	ENSXMAG00000006999 #18	ENSXMAG00000007019 #19	pip5k1ab (ENSXMAG00000007023) #20	psmd4b (ENSXMAG00000007039) #22	znf687a (ENSXMAG00000028501) #23	ENSXMAG00000007068 #24	ENSXMAG00000025495	ENSXMAG00000007071 #26	ENSXMAG00000007074 #27	aqp10a (ENSXMAG00000007140) #28	aqp10a (ENSXMAG00000007165) #28	ENSXMAG00000021102 #29	C1orf43 (ENSXMAG00000007171) #30	tuft1a (ENSXMAG00000007182) #31	ENSXMAG00000007198 #32	SHE (ENSXMAG00000007217) #33	CHRNB2 (ENSXMAG00000029993) #34	s100t (ENSXMAG00000007227) #35	ENSXMAG00000007230
NAME_4	ANCESTRAL SPECIES	1	ENSGT00940000159175	ENSGT00940000165993	ENSGT00530000063909.b	ENSGT00400000022250 #8	ENSGT00940000156889 #7	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00390000003062 #25	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B.c #28	ENSGT00940000164368.B.d #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01030000234835 #36
Sheepshead minnow	MODERN SPECIES	723	rundc3b (ENSCVAG00000001742)	slc25a40 (ENSCVAG00000001747)	dbf4 (ENSCVAG00000001754)	cldn12 (ENSCVAG00000001756) #8	ADAM22 (ENSCVAG00000001778) #7	gtpbp10 (ENSCVAG00000001795) #9	OSGIN2 (ENSCVAG00000000755) #10	nbn (ENSCVAG00000001827) #11	ENSCVAG00000001833 #12	zgc:174935 (ENSCVAG00000001837) #15	si:dkey-87o1.2 (ENSCVAG00000001843) #16	them4 (ENSCVAG00000001849) #17	ENSCVAG00000001871 #18	ENSCVAG00000001885 #19	pip5k1ab (ENSCVAG00000001898) #20	psmd4b (ENSCVAG00000001915) #22	znf687a (ENSCVAG00000001923) #23	ENSCVAG00000001938 #24	ENSCVAG00000001943	ENSCVAG00000001947 #26
Mummichog	MODERN SPECIES	2225	rundc3b (ENSFHEG00000018105)	slc25a40 (ENSFHEG00000018142)	dbf4 (ENSFHEG00000018286)	cldn12 (ENSFHEG00000018303) #8	ADAM22 (ENSFHEG00000018362) #7	gtpbp10 (ENSFHEG00000018435) #9	OSGIN2 (ENSFHEG00000018468) #10	nbn (ENSFHEG00000018484) #11	ENSFHEG00000018491 #12	ENSFHEG00000018497 #15	si:dkey-87o1.2 (ENSFHEG00000018512) #16	them4 (ENSFHEG00000018518) #17	ENSFHEG00000018642 #18	ENSFHEG00000018657 #19	pip5k1ab (ENSFHEG00000018677) #20	psmd4b (ENSFHEG00000018708) #22	znf687a (ENSFHEG00000019015) #23	ENSFHEG00000019044 #24	ENSFHEG00000019052 #25	ENSFHEG00000019129 #26	ENSFHEG00000000494 #27	ENSFHEG00000019329 #26	aqp10a (ENSFHEG00000019420) #28	aqp10a (ENSFHEG00000020370) #28	ENSFHEG00000020395 #29	C1orf43 (ENSFHEG00000000510) #30	tuft1a (ENSFHEG00000020428) #31	ENSFHEG00000020442 #32	SHE (ENSFHEG00000020485) #33	CHRNB2 (ENSFHEG00000020499) #34	s100t (ENSFHEG00000020504) #35
Oryzias	ANCESTRAL SPECIES	2	ENSGT00940000159175	ENSGT00940000165993	ENSGT00530000063909.b	ENSGT00400000022250 #8	ENSGT00940000156889 #7	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00390000003062 #25	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01030000234835 #36	ENSGT00940000154172.b #37
Oryzias_b	ANCESTRAL SPECIES	1	ENSGT00940000159175	ENSGT00940000165993	ENSGT00530000063909.b	ENSGT00400000022250 #8	ENSGT00940000156889 #7	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00390000003062 #25	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01030000234835 #36	ENSGT00940000154172.b #37
Indian medaka	MODERN SPECIES	5	rundc3b (ENSOMEG00000005736)	slc25a40 (ENSOMEG00000005773)	dbf4 (ENSOMEG00000005869)	cldn12 (ENSOMEG00000005885) #8	ADAM22 (ENSOMEG00000005926) #7	gtpbp10 (ENSOMEG00000005980) #9	OSGIN2 (ENSOMEG00000006019) #10	nbn (ENSOMEG00000006065) #11	ENSOMEG00000006073 #12	ENSOMEG00000000875 #15	si:dkey-87o1.2 (ENSOMEG00000006101) #16	them4 (ENSOMEG00000006120) #17	ENSOMEG00000006159 #18	ENSOMEG00000006195 #19	pip5k1ab (ENSOMEG00000006274) #20	psmd4b (ENSOMEG00000006340) #22	znf687a (ENSOMEG00000006384) #23	ENSOMEG00000006440 #24	ENSOMEG00000006484 #26	ENSOMEG00000006652 #27	aqp10a (ENSOMEG00000006694) #28	ENSOMEG00000006726 #29	C1orf43 (ENSOMEG00000006745) #30	tuft1a (ENSOMEG00000006784) #31	ENSOMEG00000006860 #32	SHE (ENSOMEG00000006894) #33	CHRNB2 (ENSOMEG00000006932) #34	s100t (ENSOMEG00000006947) #35	ENSOMEG00000006969 #36	s100a11 (ENSOMEG00000006979) #37	pbxip1b (ENSOMEG00000007035)
Javanese ricefish	MODERN SPECIES	7	rundc3b (ENSOJAG00000010350)	slc25a40 (ENSOJAG00000010456)	dbf4 (ENSOJAG00000010674)	ADAM22 (ENSOJAG00000010914) #7	cldn12 (ENSOJAG00000013911) #8	gtpbp10 (ENSOJAG00000013933) #9	OSGIN2 (ENSOJAG00000014016) #10	nbn (ENSOJAG00000014029) #11	ENSOJAG00000014042 #12	ENSOJAG00000014049 #15	si:dkey-87o1.2 (ENSOJAG00000014055) #16	them4 (ENSOJAG00000014077) #17	ENSOJAG00000014087 #18	ENSOJAG00000014104 #19	pip5k1ab (ENSOJAG00000014195) #20	psmd4b (ENSOJAG00000015047) #22	znf687a (ENSOJAG00000015161) #23	ENSOJAG00000015305 #24	ENSOJAG00000015320 #25	ENSOJAG00000015331 #26	ENSOJAG00000015384 #27	aqp10a (ENSOJAG00000017401) #28	ENSOJAG00000017409 #29	C1orf43 (ENSOJAG00000017415) #30	tuft1a (ENSOJAG00000017422) #31	ENSOJAG00000017433 #32	SHE (ENSOJAG00000017477) #33	CHRNB2 (ENSOJAG00000017483) #34	s100t (ENSOJAG00000017487) #35	ENSOJAG00000017498 #36	s100a11 (ENSOJAG00000017506) #37
Oryzias_a	ANCESTRAL SPECIES	9	ENSGT00940000159175	ENSGT00940000165993	ENSGT00530000063909.b	ENSGT00940000156889 #7	ENSGT00400000022250 #8	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00940000172009	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01030000234835 #36	ENSGT00940000154172.b #37
Japanese Medaka HdrR	MODERN SPECIES	7	rundc3b (ENSORLG00000009310)	slc25a40 (ENSORLG00000009345)	dbf4 (ENSORLG00000009352)	ADAM22 (ENSORLG00000009366) #7	cldn12 (ENSORLG00000009373) #8	gtpbp10 (ENSORLG00000009408) #9	OSGIN2 (ENSORLG00000009424) #10	nbn (ENSORLG00000009450) #11	ENSORLG00000027068 #12	si:dkey-87o1.2 (ENSORLG00000009461) #16	ENSORLG00000023477 #15	them4 (ENSORLG00000029589) #17	ENSORLG00000009486 #18	ENSORLG00000009496 #19	pip5k1ab (ENSORLG00000030427) #20	psmd4b (ENSORLG00000009532) #22	znf687a (ENSORLG00000009548) #23	ENSORLG00000027159 #24	ENSORLG00000025215	ENSORLG00000028968 #26	ENSORLG00000009604 #27	aqp10a (ENSORLG00000009610) #28	ENSORLG00000027199 #29	ENSORLG00000009633 #30	tuft1a (ENSORLG00000009652) #31	ENSORLG00000009675 #32	SHE (ENSORLG00000024988) #33	CHRNB2 (ENSORLG00000009700) #34	s100t (ENSORLG00000009724) #35	ENSORLG00000025488 #36	s100a11 (ENSORLG00000030520) #37
Chinese medaka	MODERN SPECIES	467	acbd7 (ENSOSIG00000000877)	crot (ENSOSIG00000000892)	abcb4 (ENSOSIG00000000975)	rundc3b (ENSOSIG00000007043)	slc25a40 (ENSOSIG00000007044)	dbf4 (ENSOSIG00000007047)	ADAM22 (ENSOSIG00000007084) #7	cldn12 (ENSOSIG00000010745) #8	gtpbp10 (ENSOSIG00000010749) #9	OSGIN2 (ENSOSIG00000010750) #10	ENSOSIG00000010755 #12	them4 (ENSOSIG00000010756) #17	ENSOSIG00000010760	ENSOSIG00000010764 #19	pip5k1ab (ENSOSIG00000010783) #20	psmd4b (ENSOSIG00000011829) #22	znf687a (ENSOSIG00000011923) #23	ENSOSIG00000011925 #24	ENSOSIG00000011927	ENSOSIG00000011928 #26	ENSOSIG00000011948 #27	aqp10a (ENSOSIG00000013023) #28	ENSOSIG00000013024 #29	C1orf43 (ENSOSIG00000013027) #30	tuft1a (ENSOSIG00000013029) #31	ENSOSIG00000013033 #32	SHE (ENSOSIG00000013035) #33	CHRNB2 (ENSOSIG00000013037) #34	s100t (ENSOSIG00000013039) #35	ENSOSIG00000013040 #36	ENSOSIG00000013042
Ovalentaria_B	ANCESTRAL SPECIES	1	ENSGT00940000156889 #7	ENSGT00400000022250 #8	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT01060000249136 #13	ENSGT00990000204777 #14	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT01100000263515.a.b.a.b.b.k.a.a.a #21	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00390000003062 #25	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01030000234835 #36	ENSGT00940000154172.b #37
Pomacentridae	ANCESTRAL SPECIES	18	ENSGT00940000165993	ENSGT00530000063909.b	ENSGT00940000156889 #7	ENSGT00400000022250 #8	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT01100000263515.a.b.a.b.b.k.a.a.a #21	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00390000003062 #25	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01030000234835 #36	ENSGT00940000154172.b #37	ENSGT00730000111747.a
Pomacentridae_A	ANCESTRAL SPECIES	5	ENSGT00940000165993	ENSGT00530000063909.b	ENSGT00940000156889 #7	ENSGT00400000022250 #8	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT01100000263515.a.b.a.b.b.k.a.a.a #21	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00390000003062 #25	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01030000234835 #36	ENSGT00940000154172.b #37	ENSGT00730000111747.a
Amphiprion	ANCESTRAL SPECIES	1	ENSGT00940000165993	ENSGT00530000063909.b	ENSGT00940000156889 #7	ENSGT00400000022250 #8	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT01100000263515.a.b.a.b.b.k.a.a.a #21	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00390000003062 #25	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01030000234835 #36	ENSGT00940000154172.b #37	ENSGT00730000111747.a
Clown anemonefish	MODERN SPECIES	3486												ENSAOCG00000000543 #18	ENSAOCG00000009015 #19	pip5k1ab (ENSAOCG00000008993) #20	ENSAOCG00000008978 #21	psmd4b (ENSAOCG00000000529) #22	znf687a (ENSAOCG00000008916) #23	ENSAOCG00000008897 #25	ENSAOCG00000008884 #26	ENSAOCG00000008850 #27	aqp10a (ENSAOCG00000008773) #28	ENSAOCG00000008751 #29	C1orf43 (ENSAOCG00000000508) #30
Orange clownfish	MODERN SPECIES	21	slc25a40 (ENSAPEG00000002553)	dbf4 (ENSAPEG00000002612)	ADAM22 (ENSAPEG00000002662) #7	cldn12 (ENSAPEG00000002735) #8	gtpbp10 (ENSAPEG00000002756) #9	OSGIN2 (ENSAPEG00000002782) #10	nbn (ENSAPEG00000002828) #11	ENSAPEG00000002845 #12	zgc:174935 (ENSAPEG00000002860) #15	si:dkey-87o1.2 (ENSAPEG00000002867) #16	them4 (ENSAPEG00000002875) #17	ENSAPEG00000002890 #18	ENSAPEG00000002945 #19	pip5k1ab (ENSAPEG00000002961) #20	ENSAPEG00000003022 #21	psmd4b (ENSAPEG00000003043) #22	znf687a (ENSAPEG00000003100) #23	ENSAPEG00000003116	ENSAPEG00000003136 #25	ENSAPEG00000003149 #26	ENSAPEG00000003173 #27	aqp10a (ENSAPEG00000003280) #28	ENSAPEG00000003355 #29	C1orf43 (ENSAPEG00000003365) #30	tuft1a (ENSAPEG00000003370) #31	ENSAPEG00000003380 #32	SHE (ENSAPEG00000003405) #33	CHRNB2 (ENSAPEG00000003466) #34	s100t (ENSAPEG00000003495) #35	ENSAPEG00000003505 #36	s100a11 (ENSAPEG00000003521) #37
Spiny chromis	MODERN SPECIES	242	slc25a40 (ENSAPOG00000024167)	dbf4 (ENSAPOG00000024129)	ADAM22 (ENSAPOG00000024106) #7	cldn12 (ENSAPOG00000024091) #8	gtpbp10 (ENSAPOG00000024081) #9	OSGIN2 (ENSAPOG00000024071) #10	nbn (ENSAPOG00000024055) #11	ENSAPOG00000024015 #12	zgc:174935 (ENSAPOG00000024003) #15	si:dkey-87o1.2 (ENSAPOG00000023994) #16	them4 (ENSAPOG00000023985) #17	ENSAPOG00000023918 #18	ENSAPOG00000023835 #19	pip5k1ab (ENSAPOG00000023814) #20	ENSAPOG00000023792 #21	psmd4b (ENSAPOG00000023778) #22	znf687a (ENSAPOG00000023720) #23	ENSAPOG00000023702 #25	ENSAPOG00000023691 #26	ENSAPOG00000023661 #27
Bicolor damselfish	MODERN SPECIES	753				cldn12 (ENSSPAG00000003582) #8	ADAM22 (ENSSPAG00000003487) #7	gtpbp10 (ENSSPAG00000003435) #9	OSGIN2 (ENSSPAG00000003386) #10	nbn (ENSSPAG00000003316) #11	ENSSPAG00000003291 #12	ENSSPAG00000003278 #16	ENSSPAG00000003238	ENSSPAG00000003205 #18	ENSSPAG00000003177 #19	pip5k1ab (ENSSPAG00000003070) #20	ENSSPAG00000003041 #21	psmd4b (ENSSPAG00000003011) #22	ENSSPAG00000002977	ZNF687 (ENSSPAG00000002960) #23	ENSSPAG00000002937 #25	ENSSPAG00000002913 #26	ENSSPAG00000002857 #27	aqp10a (ENSSPAG00000002825) #28	ENSSPAG00000002816 #29	C1orf43 (ENSSPAG00000002780) #30
Cichlidae	ANCESTRAL SPECIES	9	ENSGT00530000063909.b	ENSGT00400000022250 #8	ENSGT00940000156889 #7	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT01060000249136 #13	ENSGT00990000204777 #14	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00390000003062 #25	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01030000234835 #36	ENSGT00940000177151
Pseudocrenilabrinae	ANCESTRAL SPECIES	2	ENSGT00940000159175	ENSGT00940000165993	ENSGT00530000063909.b	ENSGT00400000022250 #8	ENSGT00940000156889 #7	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00390000003062 #25	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01030000234835 #36	ENSGT00940000177151
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	1	ENSGT00940000159175	ENSGT00940000165993	ENSGT00530000063909.b	ENSGT00400000022250 #8	ENSGT00940000156889 #7	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00390000003062 #25	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01030000234835 #36	ENSGT00940000177151
Haplochromini	ANCESTRAL SPECIES	6	ENSGT00940000159175	ENSGT00940000165993	ENSGT00530000063909.b	ENSGT00400000022250 #8	ENSGT00940000156889 #7	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00390000003062 #25	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01030000234835 #36	ENSGT00940000177151
Burton s mouthbrooder	MODERN SPECIES	466					ADAM22 (ENSHBUG00000005059) #7	gtpbp10 (ENSHBUG00000004852) #9	OSGIN2 (ENSHBUG00000004842) #10	nbn (ENSHBUG00000001019) #11	ENSHBUG00000004790 #12	ENSHBUG00000004781 #15	si:dkey-87o1.2 (ENSHBUG00000004761) #16	them4 (ENSHBUG00000004744) #17	ENSHBUG00000004733 #18	ENSHBUG00000004707 #19	pip5k1ab (ENSHBUG00000004688) #20	psmd4b (ENSHBUG00000004617) #22	znf687a (ENSHBUG00000004580) #23	ENSHBUG00000004571 #25	ENSHBUG00000004557 #26	ENSHBUG00000004510 #27	aqp10a (ENSHBUG00000004345) #28	ENSHBUG00000004316 #29	C1orf43 (ENSHBUG00000004304) #30	tuft1a (ENSHBUG00000004279) #31	ENSHBUG00000004266 #32	SHE (ENSHBUG00000004246) #33	CHRNB2 (ENSHBUG00000004229) #34	s100t (ENSHBUG00000004201) #35	ENSHBUG00000004193 #36	ENSHBUG00000004186	SHC1 (ENSHBUG00000004149)
Haplochromini_A	ANCESTRAL SPECIES	18	ENSGT00940000159175	ENSGT00940000165993	ENSGT00530000063909.b	ENSGT00400000022250 #8	ENSGT00940000156889 #7	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00390000003062 #25	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01030000234835 #36	ENSGT00940000177151
Haplochromini_B	ANCESTRAL SPECIES	6	ENSGT00940000159175	ENSGT00940000165993	ENSGT00530000063909.b	ENSGT00940000156889 #7	ENSGT00400000022250 #8	ENSGT00940000155589 #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00390000003062 #25	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT01030000234835 #36	ENSGT00940000177151
Eastern happy	MODERN SPECIES	2	ENSACLG00000017252	slc25a40 (ENSACLG00000017261)	dbf4 (ENSACLG00000017304)	ADAM22 (ENSACLG00000017354) #7	cldn12 (ENSACLG00000017478) #8	gtpbp10 (ENSACLG00000017490) #9	OSGIN2 (ENSACLG00000017540) #10	nbn (ENSACLG00000017574) #11	ENSACLG00000017607 #12	zgc:174935 (ENSACLG00000017623) #15	si:dkey-87o1.2 (ENSACLG00000017629) #16	them4 (ENSACLG00000017639) #17	ENSACLG00000017667 #18	ENSACLG00000017718 #19	pip5k1ab (ENSACLG00000017787) #20	psmd4b (ENSACLG00000017855) #22	znf687a (ENSACLG00000017906) #23	ENSACLG00000017945 #24	ENSACLG00000018058 #25	ENSACLG00000018088 #26	ENSACLG00000018140 #27	aqp10a (ENSACLG00000018480) #28	ENSACLG00000018509 #29	C1orf43 (ENSACLG00000018518) #30	tuft1a (ENSACLG00000018541) #31	ENSACLG00000018588 #32	SHE (ENSACLG00000018722) #33	CHRNB2 (ENSACLG00000018743) #34	s100t (ENSACLG00000018769) #35	ENSACLG00000018777 #36	ENSACLG00000018789
Zebra mbuna	MODERN SPECIES	4	rundc3b (ENSMZEG00005022473)	slc25a40 (ENSMZEG00005022470)	dbf4 (ENSMZEG00005022467)	cldn12 (ENSMZEG00005022466) #8	ADAM22 (ENSMZEG00005022461) #7	gtpbp10 (ENSMZEG00005022457) #9	OSGIN2 (ENSMZEG00005022454) #10	nbn (ENSMZEG00005022450) #11	ENSMZEG00005022445 #12	zgc:174935 (ENSMZEG00005022441) #15	si:dkey-87o1.2 (ENSMZEG00005022440) #16	them4 (ENSMZEG00005022438) #17	ENSMZEG00005022435 #18	ENSMZEG00005022430 #19	pip5k1ab (ENSMZEG00005022427) #20	psmd4b (ENSMZEG00005022425) #22	znf687a (ENSMZEG00005022424) #23	ENSMZEG00005022423 #24	ENSMZEG00005022422 #25	ENSMZEG00005022421 #26	ENSMZEG00005022415 #27	aqp10a (ENSMZEG00005022412) #28	ENSMZEG00005022409 #29	C1orf43 (ENSMZEG00005022406) #30	tuft1a (ENSMZEG00005022404) #31	ENSMZEG00005022402 #32	SHE (ENSMZEG00005022400) #33	CHRNB2 (ENSMZEG00005022397) #34	s100t (ENSMZEG00005022395) #35	ENSMZEG00005022392 #36	ENSMZEG00005022390
P. nyererei	MODERN SPECIES	340	abcb4 (ENSPNYG00000006227)	rundc3b (ENSPNYG00000006185)	slc25a40 (ENSPNYG00000006142)	ENSPNYG00000006112	cldn12 (ENSPNYG00000006097) #8	ADAM22 (ENSPNYG00000006064) #7	gtpbp10 (ENSPNYG00000006017) #9	OSGIN2 (ENSPNYG00000005965) #10	nbn (ENSPNYG00000005937) #11	zgc:174935 (ENSPNYG00000005922) #15	si:dkey-87o1.2 (ENSPNYG00000005912) #16	them4 (ENSPNYG00000005881) #17	ENSPNYG00000005844 #18	ENSPNYG00000005784 #19	pip5k1ab (ENSPNYG00000005720) #20	psmd4b (ENSPNYG00000005677) #22	ZNF687 (ENSPNYG00000005665) #23	ENSPNYG00000005646 #25	ENSPNYG00000005626 #26	ENSPNYG00000005550 #27	aqp10a (ENSPNYG00000005533) #28	ENSPNYG00000005511 #29	C1orf43 (ENSPNYG00000005488) #30	tuft1a (ENSPNYG00000005458) #31	ENSPNYG00000005439 #32	SHE (ENSPNYG00000005425) #33	CHRNB2 (ENSPNYG00000005397) #34	s100t (ENSPNYG00000005385) #35	ENSPNYG00000005371 #36	ENSPNYG00000005346	lenep (ENSPNYG00000005331)
Lyretail cichlid	MODERN SPECIES	421			rundc3b (ENSNBRG00000006328)	slc25a40 (ENSNBRG00000006295)	cldn12 (ENSNBRG00000006284) #8	ADAM22 (ENSNBRG00000006144) #7	gtpbp10 (ENSNBRG00000006085) #9	OSGIN2 (ENSNBRG00000006040) #10	nbn (ENSNBRG00000005955) #11	ENSNBRG00000005919 #12	ENSNBRG00000005898 #16	them4 (ENSNBRG00000005879) #17	ENSNBRG00000005866 #18	ENSNBRG00000005859 #19	pip5k1ab (ENSNBRG00000005819) #20	psmd4b (ENSNBRG00000005781) #22	znf687a (ENSNBRG00000005680) #23	ENSNBRG00000005657	ENSNBRG00000005599 #26	ENSNBRG00000005473 #27	aqp10a (ENSNBRG00000005446) #28	ENSNBRG00000005422 #29	C1orf43 (ENSNBRG00000005400) #30	tuft1a (ENSNBRG00000005390) #31	ENSNBRG00000005332 #32	SHE (ENSNBRG00000005320) #33	CHRNB2 (ENSNBRG00000005296) #34	s100t (ENSNBRG00000005286) #35	ENSNBRG00000005278 #36	ENSNBRG00000005246	SHC1 (ENSNBRG00000005224)
Nile tilapia	MODERN SPECIES	2	dbf4 (ENSONIG00000006171)	rundc3b (ENSONIG00000006160)	slc25a40 (ENSONIG00000006164)	ADAM22 (ENSONIG00000006173) #7	cldn12 (ENSONIG00000006193) #8	gtpbp10 (ENSONIG00000006196) #9	OSGIN2 (ENSONIG00000006201) #10	nbn (ENSONIG00000006204) #11	ENSONIG00000006215 #12	zgc:174935 (ENSONIG00000029899) #15	si:dkey-87o1.2 (ENSONIG00000027694) #16	them4 (ENSONIG00000006218) #17	ENSONIG00000006222 #18	ENSONIG00000006225 #19	pip5k1ab (ENSONIG00000006226) #20	psmd4b (ENSONIG00000006232) #22	znf687a (ENSONIG00000006242) #23	ENSONIG00000006248 #24	ENSONIG00000041322 #25	ENSONIG00000033596 #26	ENSONIG00000006250 #27	aqp10a (ENSONIG00000006266) #28	ENSONIG00000040834 #29	C1orf43 (ENSONIG00000006270) #30	tuft1 (ENSONIG00000006277) #32	SHE (ENSONIG00000032975) #33	CHRNB2 (ENSONIG00000006286) #34	s100t (ENSONIG00000006290) #35	ENSONIG00000041755 #36	s100a11 (ENSONIG00000042286) #37	pbxip1b (ENSONIG00000032523)
Midas cichlid	MODERN SPECIES	303	dbf4 (ENSACIG00000011358)	ENSACIG00000011348	cldn12 (ENSACIG00000011340) #8	ADAM22 (ENSACIG00000011300) #7	gtpbp10 (ENSACIG00000011274) #9	OSGIN2 (ENSACIG00000011249) #10	nbn (ENSACIG00000011227) #11	ENSACIG00000011221 #13	ENSACIG00000011212 #14	ENSACIG00000011205 #15	si:dkey-87o1.2 (ENSACIG00000011199) #16	them4 (ENSACIG00000011182) #17	ENSACIG00000011161 #18	ENSACIG00000011142 #19	pip5k1ab (ENSACIG00000011070) #20	psmd4b (ENSACIG00000011041) #22	znf687a (ENSACIG00000010954) #23	ENSACIG00000010935 #25	ENSACIG00000010890 #26	ENSACIG00000010822 #27	aqp10a (ENSACIG00000010773) #28	ENSACIG00000010751 #29	C1orf43 (ENSACIG00000010718) #30	tuft1a (ENSACIG00000010688) #31	ENSACIG00000010611 #32	SHE (ENSACIG00000010597) #33	CHRNB2 (ENSACIG00000010578) #34	s100t (ENSACIG00000010560) #35	ENSACIG00000010551 #36	ENSACIG00000010543	ENSACIG00000010533
Pinecone sodierfish	MODERN SPECIES	7	slc25a40 (ENSMMDG00005014175)	dbf4 (ENSMMDG00005014177)	ADAM22 (ENSMMDG00005014182) #7	cldn12 (ENSMMDG00005014183) #8	gtpbp10 (ENSMMDG00005014186) #9	OSGIN2 (ENSMMDG00005014193) #10	nbn (ENSMMDG00005014197) #11	ENSMMDG00005014201 #12	ENSMMDG00005014205	ENSMMDG00005014209	them4 (ENSMMDG00005014214) #17	ENSMMDG00005014217 #18	ENSMMDG00005014234 #19	pip5k1ab (ENSMMDG00005014243) #20	ENSMMDG00005014252 #21	psmd4b (ENSMMDG00005014264) #22	znf687a (ENSMMDG00005014271) #23	ENSMMDG00005014279	ENSMMDG00005014282 #26	ENSMMDG00005014288 #27	ENSMMDG00005014297 #27	aqp10a (ENSMMDG00005014315) #28	ENSMMDG00005014733 #29	C1orf43 (ENSMMDG00005014738) #30	tuft1a (ENSMMDG00005014750) #31	ENSMMDG00005014792 #32	SHE (ENSMMDG00005014913) #33	CHRNB2 (ENSMMDG00005014916) #34	s100t (ENSMMDG00005014919) #35	ENSMMDG00005014921	s100a11 (ENSMMDG00005014923) #37
Cod	MODERN SPECIES	2	rundc3b (ENSGMOG00000010067)	slc25a40 (ENSGMOG00000008063)	dbf4 (ENSGMOG00000008054)	cldn12 (ENSGMOG00000008052) #8	ADAM22 (ENSGMOG00000008042) #7	ENSGMOG00000033067	ENSGMOG00000034523 #10	ENSGMOG00000008039 #11	zgc:174935 (ENSGMOG00000008027) #15	si:dkey-87o1.2 (ENSGMOG00000008021) #16	them4 (ENSGMOG00000022817) #17	ENSGMOG00000008012 #18	ENSGMOG00000008008 #19	PIP5K1A (ENSGMOG00000007986) #20	ENSGMOG00000007994 #21	psmd4b (ENSGMOG00000003095) #22	znf687a (ENSGMOG00000027177) #23	ENSGMOG00000034138 #24	ENSGMOG00000030489	ENSGMOG00000037102 #26	ENSGMOG00000007963 #27	aqp10a (ENSGMOG00000007960) #28	ENSGMOG00000029608	ENSGMOG00000035644 #29	ENSGMOG00000007932 #30	tuft1a (ENSGMOG00000007924) #31	ENSGMOG00000007910 #32	ENSGMOG00000007899 #33	ENSGMOG00000007897 #34	s100t (ENSGMOG00000017367) #35	ENSGMOG00000031542
Protacanthopterygii	ANCESTRAL SPECIES	1	ENSGT00940000165993	ENSGT00530000063909.b	ENSGT00940000156889 #7	ENSGT00400000022250 #8	ENSGT00940000155589 #9	ENSGT00390000015769.A	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00940000165521.b #26	ENSGT00940000165692.b #27	ENSGT00940000164368.B #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b #34	ENSGT00940000165956 #35	ENSGT00940000171931	ENSGT00940000154172.b.a #37	ENSGT00940000166466.f
Salmoninae	ANCESTRAL SPECIES	140	ENSGT00400000022250.e.b #8	ENSGT00940000155589.d #9	ENSGT00390000015769.A	ENSGT00940000155589.c #9	ENSGT00390000006658.a.b #10	ENSGT00390000000521 #11	ENSGT00940000154371.a.b #12	ENSGT00620000088774.a #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484.d.a #18	ENSGT00390000006215.a.d #19	ENSGT00940000167484.c #18	ENSGT00390000006215.a.c #19	ENSGT00940000154703.j #20	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b #24	ENSGT00940000165521.b #26	ENSGT00940000165692.b.b #27	ENSGT00940000164368.B.i.b #28	ENSGT00940000164368.B.i.a #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a.b #30	ENSGT00950000183065.B.e #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b.h #34	ENSGT00940000165956.f #35	ENSGT00940000171931.d.b	ENSGT00940000166466.f.f
Huchen	DUPLICATION
Huchen	MODERN SPECIES	1934				cldn12 (ENSHHUG00000014209) #8	ENSHHUG00000014212 #7	gtpbp10 (ENSHHUG00000014223) #9	ENSHHUG00000014312	OSGIN2 (ENSHHUG00000014316) #10	nbn (ENSHHUG00000014385) #11	zgc:174935 (ENSHHUG00000014462) #15	si:dkey-87o1.2 (ENSHHUG00000014477) #16	ENSHHUG00000014489 #18	ENSHHUG00000014515 #19	ENSHHUG00000014517 #19	pip5k1ab (ENSHHUG00000014520) #20	psmd4b (ENSHHUG00000014530) #22	znf687a (ENSHHUG00000014710) #23	ENSHHUG00000014721 #24
Huchen	MODERN SPECIES	1762	ADAM22 (ENSHHUG00000050028) #7	cldn12 (ENSHHUG00000050130) #8	gtpbp10 (ENSHHUG00000050141) #9	OSGIN2 (ENSHHUG00000050156) #10	nbn (ENSHHUG00000050169) #11	ENSHHUG00000050179	zgc:174935 (ENSHHUG00000050181) #15	si:dkey-87o1.2 (ENSHHUG00000050187) #16	ENSHHUG00000050192	ENSHHUG00000050197	ENSHHUG00000050199 #18	ENSHHUG00000050230 #19	ENSHHUG00000050231 #18	ENSHHUG00000050291 #19	pip5k1ab (ENSHHUG00000050309) #20	psmd4b (ENSHHUG00000050318) #22	ZNF687 (ENSHHUG00000050328) #23	ENSHHUG00000050338 #24
Salmoninae_a	ANCESTRAL SPECIES	63	ENSGT00990000204777 #14	ENSGT00620000088774.b #15	ENSGT00390000000521.d.b.b #11	ENSGT00940000154371.a.b #12	ENSGT00620000088774.a #15	ENSGT00390000015721 #16	ENSGT00940000160047.e #17	ENSGT00940000167484.d.b #18	ENSGT00990000212773	ENSGT00940000160047.f #17	ENSGT00940000167484.d.a #18	ENSGT00390000006215.a.d #19	ENSGT00940000167484.c #18	ENSGT00390000006215.a.c #19	ENSGT00940000154703.j #20	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00950000182957.a.b.t #24	ENSGT00940000165521.b #26	ENSGT00940000165692.b.b #27	ENSGT00940000164368.B.i.b #28	ENSGT00940000164368.B.i.a #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a.b #30	ENSGT00950000183065.B.e.b.b #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j #33	ENSGT00940000158417.b.g.a #34	ENSGT00940000165956.e.a #35	ENSGT00940000171931.d.a	ENSGT00940000154172.b.a #37
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES	59	ENSGT00400000022250.e.a.a #8	ENSGT00940000155589.d.d #9	ENSGT00390000015769.A	ENSGT00940000163520.A.a.a.a.a.a.a.g.a.a.b	ENSGT00390000006658.a.b.m #10	ENSGT01060000249136 #13	ENSGT00990000204777 #14	ENSGT00620000088774.b #15	ENSGT00940000160047.f #17	ENSGT00940000167484.d.a.a #18	ENSGT00390000006215.a.c.c #19	ENSGT00940000154703.j.e #20	ENSGT00530000064050.b.d #22	ENSGT00390000006215.a.c.d #19	ENSGT00940000154703.j.f #20	ENSGT00530000064050.b.c #22	ENSGT00940000156524.b.h #23	ENSGT00940000165521.b.m.b #26	ENSGT00940000165692.b.a.b #27	ENSGT00940000164368.B.i.b #28	ENSGT00940000156178.B.i.b #29	ENSGT00950000183065.B.e.b.b #31	ENSGT00940000154489.B.b.i #32	ENSGT00940000159107.j.e.a.a #33	ENSGT00940000158417.b.h #34	ENSGT00940000165956.e.b #35	ENSGT00940000171931.d.a.a	ENSGT00940000154172.b.a #37	ENSGT00940000166466.f.f	ENSGT00730000111747.a.c.c	ENSGT00390000002996.f
Rainbow trout	MODERN SPECIES	21	slc25a40 (ENSOMYG00000019285)	dbf4 (ENSOMYG00000019233)	ENSOMYG00000070448	ADAM22 (ENSOMYG00000031265) #7	cldn12 (ENSOMYG00000031875) #8	ENSOMYG00000031956 #9	ENSOMYG00000032105 #10	ENSOMYG00000032120 #14	zgc:174935 (ENSOMYG00000055812) #15	si:dkey-87o1.2 (ENSOMYG00000001698) #16	ENSOMYG00000051517	them4 (ENSOMYG00000032138) #17	rorc-like (ENSOMYG00000032146) #18	ENSOMYG00000032162 #19	PIP5K1A (ENSOMYG00000032256) #20	psmd4b (ENSOMYG00000032932) #22	znf687a (ENSOMYG00000032998) #23	ENSOMYG00000000158 #26	ENSOMYG00000000170 #27	ENSOMYG00000002492 #29	ENSOMYG00000054166 #30	tuft1a (ENSOMYG00000076838) #31	ENSOMYG00000061106 #32	ENSOMYG00000000590 #33	ENSOMYG00000000193 #34	s100t (ENSOMYG00000000202) #35	ENSOMYG00000000216	ENSOMYG00000000246 #37	ENSOMYG00000000299	pbxip1b (ENSOMYG00000000320)	ENSOMYG00000062803
Oncorhynchus_a	ANCESTRAL SPECIES	85	ENSGT00390000000521.d.b.a #11	ENSGT00620000088774.a #15	ENSGT00390000015721 #16	ENSGT00940000160047.e #17	ENSGT00990000212773	ENSGT00940000160047.f #17	ENSGT00940000167484.d.a.a #18	ENSGT00390000006215.a.c.c #19	ENSGT00940000154703.j.e #20	ENSGT00530000064050.b.d #22	ENSGT00940000156524.b.g #23	ENSGT00950000182957.a.b.t #24	ENSGT00940000165521.b.n #26	ENSGT00390000006215.a.c.d #19	ENSGT00940000154703.j.f #20	ENSGT00530000064050.b.c #22	ENSGT00940000156524.b.h #23	ENSGT00940000165521.b.m.b #26	ENSGT00940000165692.b.a.b #27	ENSGT00940000164368.B.i.b #28	ENSGT00940000156178.B.i.b #29	ENSGT00940000154489.B.b.i #32	ENSGT00940000159107.j.e.a.a #33	ENSGT00940000158417.b.h #34	ENSGT00940000165956.e.b #35	ENSGT00940000171931.d.a.a	ENSGT00940000154172.b.a #37	ENSGT00730000111747.a.c.d	ENSGT00940000158417.b.g.a #34	ENSGT00940000165956.e.a #35	ENSGT00940000166466.f.f
Chinook salmon	MODERN SPECIES	115	ENSOTSG00005013767	cldn12 (ENSOTSG00005013770) #8	ENSOTSG00005013772 #7	gtpbp10 (ENSOTSG00005013775) #9	ENSOTSG00005013777	ENSOTSG00005013778	OSGIN2 (ENSOTSG00005013808) #10	nbn (ENSOTSG00005013809) #11	ENSOTSG00005013811	ENSOTSG00005013813	si:dkey-87o1.2 (ENSOTSG00005013814) #16	them4 (ENSOTSG00005013815) #17	ENSOTSG00005013816 #18	ENSOTSG00005013817 #19	pip5k1ab (ENSOTSG00005023836) #20	psmd4b (ENSOTSG00005023843) #22	znf687a (ENSOTSG00005024410) #23	ENSOTSG00005024411 #24	ENSOTSG00005024416 #26	gtpbp10 (ENSOTSG00005024479) #9	OSGIN2 (ENSOTSG00005024551) #10	nbn (ENSOTSG00005024552) #11	si:dkey-87o1.2 (ENSOTSG00005024553) #16	ENSOTSG00005024554 #18	ENSOTSG00005024556 #19	ENSOTSG00005024557 #19	osr2 (ENSOTSG00005024559)
Coho salmon	MODERN SPECIES	11	ENSOKIG00005010239	dbf4 (ENSOKIG00005010242)	ADAM22 (ENSOKIG00005010329) #7	cldn12 (ENSOKIG00005012169) #8	gtpbp10 (ENSOKIG00005012177) #9	ENSOKIG00005012199 #9	OSGIN2 (ENSOKIG00005012211) #10	nbn (ENSOKIG00005012219) #11	zgc:174935 (ENSOKIG00005012236) #15	si:dkey-87o1.2 (ENSOKIG00005012244) #16	them4 (ENSOKIG00005012260) #17	ENSOKIG00005012285 #18	ENSOKIG00005012324 #19	ENSOKIG00005012348 #19	PIP5K1A (ENSOKIG00005012366) #20	psmd4b (ENSOKIG00005012420) #22	znf687a (ENSOKIG00005012511) #23	ENSOKIG00005012535 #26	ENSOKIG00005012605 #27	aqp10a (ENSOKIG00005012654) #28	ENSOKIG00005012704 #29	ENSOKIG00005012711	C1orf43 (ENSOKIG00005012723) #30	ENSOKIG00005012761 #32	SHE (ENSOKIG00005012811) #33	CHRNB2 (ENSOKIG00005012820) #34	s100t (ENSOKIG00005012828) #35	ENSOKIG00005012839	ENSOKIG00005012855 #37	ENSOKIG00005012871	pbxip1b (ENSOKIG00005012897)
Oncorhynchus	ANCESTRAL SPECIES	59	ENSGT00940000165993.e	ENSGT00530000063909.b.c	ENSGT00940000156889.m.a #7	ENSGT00400000022250.e.a.a #8	ENSGT00940000155589.d.d #9	ENSGT00390000015769.A	ENSGT00940000163520.A.a.a.a.a.a.a.g.a.a.b	ENSGT00390000006658.a.b.m #10	ENSGT01060000249136 #13	ENSGT00990000204777 #14	ENSGT00620000088774.b #15	ENSGT00940000160047.f #17	ENSGT00940000167484.d.a.a #18	ENSGT00390000006215.a.c.c #19	ENSGT00940000154703.j.e #20	ENSGT00530000064050.b.d #22	ENSGT00390000006215.a.c.d #19	ENSGT00940000154703.j.f #20	ENSGT00530000064050.b.c #22	ENSGT00940000156524.b.h #23	ENSGT00940000165521.b.m.b #26	ENSGT00940000165692.b.a.b #27	ENSGT00940000164368.B.i.b #28	ENSGT00940000156178.B.i.b #29	ENSGT00950000183065.B.e.b.b #31	ENSGT00940000154489.B.b.i #32	ENSGT00940000159107.j.e.a.a #33	ENSGT00940000158417.b.h #34	ENSGT00940000165956.e.b #35	ENSGT00940000171931.d.a.a	ENSGT00940000154172.b.a #37
Rainbow trout	MODERN SPECIES	11	rundc3b (ENSOMYG00000001188)	ENSOMYG00000001234	slc25a40 (ENSOMYG00000001260)	dbf4 (ENSOMYG00000001303)	ADAM22 (ENSOMYG00000001358) #7	cldn12 (ENSOMYG00000001365) #8	gtpbp10 (ENSOMYG00000001555) #9	ENSOMYG00000069528 #10	nbn (ENSOMYG00000001649) #11	zgc:174935 (ENSOMYG00000001671) #15	si:dkey-87o1.2 (ENSOMYG00000076261) #16	them4 (ENSOMYG00000001725) #17	ENSOMYG00000001763 #18	ENSOMYG00000001798 #19	PIP5K1A (ENSOMYG00000001928) #20	psmd4b (ENSOMYG00000002085) #22	znf687a (ENSOMYG00000002126) #23	ENSOMYG00000002132 #24	ENSOMYG00000048153	ENSOMYG00000002231 #26	ENSOMYG00000061280 #27	aqp10a (ENSOMYG00000002464) #28	ENSOMYG00000053336 #29	ENSOMYG00000002403 #30	tuft1a (ENSOMYG00000002578) #31	ENSOMYG00000002631 #32	ENSOMYG00000002644 #33	ENSOMYG00000002649 #34	ENSOMYG00000061554	s100t (ENSOMYG00000070358) #35	ENSOMYG00000060897
Oncorhynchus_a	ANCESTRAL SPECIES	85	ENSGT00940000163520.A.a.a.a.a.a.a.g.a.a.b	ENSGT00390000006658.a.b.m.a #10	ENSGT01060000249136 #13	ENSGT00990000204777 #14	ENSGT00940000155589.c #9	ENSGT00390000006658.a.b.n #10	ENSGT00390000000521.d.b.a #11	ENSGT00620000088774.a #15	ENSGT00390000015721 #16	ENSGT00940000160047.e #17	ENSGT00990000212773	ENSGT00940000160047.f #17	ENSGT00940000167484.d.a.a #18	ENSGT00390000006215.a.c.c #19	ENSGT00940000154703.j.e #20	ENSGT00530000064050.b.d #22	ENSGT00940000156524.b.g #23	ENSGT00950000182957.a.b.t #24	ENSGT00940000165521.b.n #26	ENSGT00390000006215.a.c.d #19	ENSGT00940000154703.j.f #20	ENSGT00530000064050.b.c #22	ENSGT00940000156524.b.h #23	ENSGT00940000165521.b.m.b #26	ENSGT00940000165692.b.a.b #27	ENSGT00940000164368.B.i.b #28	ENSGT00940000156178.B.i.b #29	ENSGT00940000154489.B.b.i #32	ENSGT00940000159107.j.e.a.a #33	ENSGT00940000158417.b.h #34	ENSGT00940000165956.e.b #35
Coho salmon	MODERN SPECIES	4	cldn12 (ENSOKIG00005017440) #8	ADAM22 (ENSOKIG00005013808) #7	gtpbp10 (ENSOKIG00005013218) #9	FAM237B (ENSOKIG00005013201)	ENSOKIG00005013185	OSGIN2 (ENSOKIG00005013179) #10	ENSOKIG00005013171 #13	ENSOKIG00005013167 #14	zgc:174935 (ENSOKIG00005013153) #15	si:dkey-87o1.2 (ENSOKIG00005013147) #16	ENSOKIG00005013138	them4 (ENSOKIG00005013119) #17	ENSOKIG00005013093 #18	ENSOKIG00005013063 #19	pip5k1ab (ENSOKIG00005012970) #20	psmd4b (ENSOKIG00005012883) #22	znf687a (ENSOKIG00005012846) #23	ENSOKIG00005012809 #24	ENSOKIG00005012782 #26	ENSOKIG00005011260 #27	aqp10a (ENSOKIG00005011184) #28	ENSOKIG00005011172 #29	C1orf43 (ENSOKIG00005011001) #30	tuft1a (ENSOKIG00005010976) #31	ENSOKIG00005010954 #32	ENSOKIG00005044228 #33	ENSOKIG00005044220	CHRNB2 (ENSOKIG00005044209) #34	s100t (ENSOKIG00005044190) #35	ENSOKIG00005044183	ENSOKIG00005044170 #37
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	76	ENSGT00390000015769.A	ENSGT00940000163520.A.a.a.a.a.a.a.g.a.a.b	ENSGT00390000006658.a.b #10	ENSGT00390000000521.d.b.b #11	ENSGT00940000154371.a.b #12	ENSGT00620000088774.a #15	ENSGT00390000015721.f #16	ENSGT00940000160047.f #17	ENSGT00940000167484.d.a #18	ENSGT00390000006215.a.d #19	ENSGT00990000212773	ENSGT00940000160047.e #17	ENSGT00940000167484.d.b #18	ENSGT00390000006215.a.c.b #19	ENSGT00940000154703.j.d #20	ENSGT00530000064050.b.e #22	ENSGT00940000156524.b.f #23	ENSGT00950000182957.a.b.t.b #24	ENSGT00940000165521.b.k #26
River trout	MODERN SPECIES	22	dbf4 (ENSSTUG00000032217)	cldn12 (ENSSTUG00000032195) #8	ADAM22 (ENSSTUG00000030834) #7	gtpbp10 (ENSSTUG00000030618) #9	ENSSTUG00000030600	ENSSTUG00000030590	OSGIN2 (ENSSTUG00000030541) #10	nbn (ENSSTUG00000030481) #11	ENSSTUG00000030463	zgc:174935 (ENSSTUG00000030458) #15	si:dkey-87o1.2 (ENSSTUG00000030453) #16	them4 (ENSSTUG00000030448) #17	ENSSTUG00000030412 #18	ENSSTUG00000030396 #19	pip5k1ab (ENSSTUG00000030359) #20	psmd4b (ENSSTUG00000029793) #22	znf687a (ENSSTUG00000029760) #23	ENSSTUG00000029723 #24	ENSSTUG00000029697 #26	ENSSTUG00000029690 #27	aqp10a (ENSSTUG00000029620) #28	ENSSTUG00000029606 #29	ENSSTUG00000029601	C1orf43 (ENSSTUG00000029584) #30	tuft1a (ENSSTUG00000029570) #31	ENSSTUG00000029541 #32	ENSSTUG00000029525 #33	ENSSTUG00000029509	s100a11 (ENSSTUG00000029505) #37	ENSSTUG00000029468	ENSSTUG00000029448
Atlantic salmon	MODERN SPECIES	24	ADAM22 (ENSSSAG00000046063) #7	FAM237B (ENSSSAG00000117317)	gtpbp10 (ENSSSAG00000044821) #9	ENSSSAG00000048733 #10	ENSSSAG00000081946	nbn (ENSSSAG00000051436) #11	ENSSSAG00000002890 #14	zgc:174935 (ENSSSAG00000085781) #15	si:dkey-87o1.2 (ENSSSAG00000055063) #16	ENSSSAG00000055073	them4 (ENSSSAG00000117909) #17	ENSSSAG00000117572	ENSSSAG00000038086 #18	ENSSSAG00000087631 #19	PIP5K1A (ENSSSAG00000105150) #20	psmd4b (ENSSSAG00000038894) #22	znf687a (ENSSSAG00000121364) #23	ENSSSAG00000087134 #24	il6ra (ENSSSAG00000062093) #26	ENSSSAG00000052698 #27	ENSSSAG00000042214 ##28	aqp10a (ENSSSAG00000042134) #28	ENSSSAG00000092174 #29	ENSSSAG00000093232 #30	ENSSSAG00000115802	ENSSSAG00000091589	tuft1a (ENSSSAG00000086883) #31	ENSSSAG00000108867 #32	ENSSSAG00000095236 #33	ENSSSAG00000101937	ENSSSAG00000115823 #34
Salmo	ANCESTRAL SPECIES	128														ENSGT00390000006215.a.c.a #19	ENSGT00940000154703.j.c #20	ENSGT00530000064050.b.f #22	ENSGT00940000156524.b.e #23	ENSGT00950000182957.a.b.t.a #24	ENSGT00940000165521.b.l #26	ENSGT00940000165692.b.b #27	ENSGT00940000164368.B.i.b #28	ENSGT01060000249872.a	ENSGT00940000164368.B.i.a #28	ENSGT00940000156178.B #29	ENSGT00510000047366.a.b #30	ENSGT00950000183065.B.e.a #31	ENSGT00510000047366.a.a #30	ENSGT00950000183065.B.e.b.b #31	ENSGT00940000154489.B.b #32	ENSGT00940000159107.j.d #33	ENSGT00940000158417.b.h #34
River trout	MODERN SPECIES	30	cldn12 (ENSSTUG00000047059) #8	gtpbp10 (ENSSTUG00000047075) #9	FAM237B (ENSSTUG00000047143)	OSGIN2 (ENSSTUG00000047150) #10	nbn (ENSSTUG00000047165) #11	ENSSTUG00000047202 #12	zgc:174935 (ENSSTUG00000047208) #15	si:dkey-87o1.2 (ENSSTUG00000047212) #16	them4 (ENSSTUG00000047216) #17	ENSSTUG00000047227 #18	ENSSTUG00000047251 #19	ENSSTUG00000047254 #19	ENSSTUG00000047257	ENSSTUG00000047261 #19	pip5k1ab (ENSSTUG00000047274) #20	psmd4b (ENSSTUG00000047294) #22	znf687a (ENSSTUG00000047399) #23	ENSSTUG00000047401 #24	ENSSTUG00000047409 #26	ENSSTUG00000047457 #27	ENSSTUG00000047776	aqp10a (ENSSTUG00000047784) #28	ENSSTUG00000047785 #29	C1orf43 (ENSSTUG00000047794) #30	tuft1a (ENSSTUG00000047801) #31	ENSSTUG00000047817 #32	ENSSTUG00000047828 #33	ENSSTUG00000047834	s100a11 (ENSSTUG00000047843) #37	pbxip1b (ENSSTUG00000047849)	lenep (ENSSTUG00000047861)
Atlantic salmon	MODERN SPECIES	11	ADAM22 (ENSSSAG00000046699) #7	cldn12 (ENSSSAG00000089964) #8	gtpbp10 (ENSSSAG00000048599) #9	ENSSSAG00000048723	ENSSSAG00000051429 #10	ENSSSAG00000100899	ENSSSAG00000109964 #11	ENSSSAG00000051462 #12	si:dkey-87o1.2 (ENSSSAG00000096396) #16	zgc:174935 (ENSSSAG00000107211) #15	them4 (ENSSSAG00000090622) #17	ENSSSAG00000051505 #18	ENSSSAG00000051551 #19	ecm1 (ENSSSAG00000051573) #19	PIP5K1A (ENSSSAG00000051625) #20	psmd4b (ENSSSAG00000046871) #22	znf687a (ENSSSAG00000096060) #23	ENSSSAG00000052324 #24	ENSSSAG00000088081	ENSSSAG00000090159	il6ra (ENSSSAG00000052467) #26	ENSSSAG00000090870 #27	ENSSSAG00000112331	ENSSSAG00000100647	aqp10a (ENSSSAG00000102365) #28	ENSSSAG00000113158 #29	ENSSSAG00000102887 #30	tuft1a (ENSSSAG00000082528) #31	ENSSSAG00000094737	ENSSSAG00000053068 #32	ENSSSAG00000088357 #33
Northern pike	MODERN SPECIES	19	slc25a40 (ENSELUG00000010504)	dbf4 (ENSELUG00000010526)	ADAM22 (ENSELUG00000010616) #7	cldn12 (ENSELUG00000010539) #8	gtpbp10 (ENSELUG00000010662) #9	OSGIN2 (ENSELUG00000010691) #10	nbn (ENSELUG00000010759) #11	ENSELUG00000010790 #12	si:dkey-87o1.2 (ENSELUG00000010813) #16	zgc:174935 (ENSELUG00000030132) #15	ENSELUG00000010834	them4 (ENSELUG00000010878) #17	ENSELUG00000010918 #18	ENSELUG00000010946 #19	pip5k1ab (ENSELUG00000011001) #20	psmd4b (ENSELUG00000011072) #22	znf687a (ENSELUG00000011099) #23	ENSELUG00000011156 #26	ENSELUG00000011191 #27	aqp10a (ENSELUG00000011238) #28	ENSELUG00000011261 #29	C1orf43 (ENSELUG00000011307) #30	tuft1a (ENSELUG00000011356) #31	ENSELUG00000011427 #32	SHE (ENSELUG00000011470) #33	CHRNB2 (ENSELUG00000011489) #34	s100t (ENSELUG00000033736) #35	ENSELUG00000011541	ENSELUG00000011590	pbxip1b (ENSELUG00000011642)	lenep (ENSELUG00000011655)
Otomorpha	ANCESTRAL SPECIES	200	ENSGT00940000157871.h.a	ENSGT00940000165997.b	ENSGT00390000002109	ENSGT01030000234571.b.b.b.a.a.g	ENSGT01030000234571.b.b.b.a.a.h	ENSGT00390000013183.d.b.a	ENSGT00940000162720.b.b.a	ENSGT00940000153496.b	ENSGT00940000154371.a.b.a #12	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00940000172009
Clupeiformes	ANCESTRAL SPECIES	190	ENSGT00440000033697.eb	ENSGT00940000157871.h.a	ENSGT00940000165997.b	ENSGT00390000002109	ENSGT01030000234571.b.b.b.a.a.h	ENSGT00390000013183.d.b.a	ENSGT00940000162720.b.b.a.g	ENSGT00940000153496.b	ENSGT00940000154371.a.b.a #12	ENSGT01060000249822	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23	ENSGT00390000003062 #25	ENSGT00940000165521.b.a #26
Atlantic herring	MODERN SPECIES	2	phc1 (ENSCHAG00000020884)	m6pr (ENSCHAG00000020879)	ENSCHAG00000020828	ccdc106a (ENSCHAG00000020807)	TMEM238 (ENSCHAG00000020801)	ENSCHAG00000020783	ENSCHAG00000020776 #12	ENSCHAG00000020771	si:dkey-87o1.2 (ENSCHAG00000020764) #16	them4 (ENSCHAG00000020740) #17	ENSCHAG00000020697 #18	ENSCHAG00000020692	ENSCHAG00000020684	ENSCHAG00000020676 #19	pip5k1ab (ENSCHAG00000020497) #20	psmd4b (ENSCHAG00000020415) #22	znf687a (ENSCHAG00000020398) #23	ENSCHAG00000020392 #25	ENSCHAG00000020324 #26	gtpbp10 (ENSCHAG00000020031) #9	ENSCHAG00000020017	ENSCHAG00000019989	ENSCHAG00000019972	OSGIN2 (ENSCHAG00000019949) #10	nbn (ENSCHAG00000019886) #11	ENSCHAG00000019875	rab13 (ENSCHAG00000019770)	rps27.2 (ENSCHAG00000019706)	KCNN3 (ENSCHAG00000019429)	adar (ENSCHAG00000018952)	SNX27 (ENSCHAG00000018734)
Denticle herring	MODERN SPECIES	14	ENSDCDG00000013899	icn (ENSDCDG00000013944)	adar (ENSDCDG00000014211)	ENSDCDG00000014478	rab13 (ENSDCDG00000014794)	ENSDCDG00000014810	ENSDCDG00000014816	adar (ENSDCDG00000014830)	KCNN3 (ENSDCDG00000014941)	ENSDCDG00000015008	ENSDCDG00000015012	ENSDCDG00000015076 #27	ENSDCDG00000017193 #26	ENSDCDG00000017203 #19	pip5k1ab (ENSDCDG00000017214) #20	psmd4b (ENSDCDG00000017334) #22	m6pr (ENSDCDG00000017372)	phc1 (ENSDCDG00000017378)	styk1b (ENSDCDG00000017385)	ENSDCDG00000017394	gapdh (ENSDCDG00000017435)	nppcl (ENSDCDG00000017623)	ncapd2 (ENSDCDG00000017694)	gtpbp10 (ENSDCDG00000018342) #9	ENSDCDG00000018970	OSGIN2 (ENSDCDG00000018976) #10	nbn (ENSDCDG00000018983) #11	ADAM23 (ENSDCDG00000019044)	eef1b2 (ENSDCDG00000019503)	ndufs1 (ENSDCDG00000019539)	ino80db (ENSDCDG00000019570)
Otophysi	ANCESTRAL SPECIES	177	ENSGT00950000183106.a.b.b	ENSGT00940000157383.g.b	ENSGT00940000156657	ENSGT00390000002109	ENSGT01030000234571.b.b.b.a.a.g	ENSGT00390000013183.d.b.a	ENSGT00940000162720.b.b.a	ENSGT00940000153496.b	ENSGT00940000154371.a.b.a #12	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT00530000064050.b #22	ENSGT00940000164382.b.b	ENSGT00940000160453	ENSGT00940000155788.k	ENSGT00940000158862	ENSGT00940000162435	ENSGT00390000000781	ENSGT00940000154686.b	ENSGT00510000049347.g
Cyprinoidei	ANCESTRAL SPECIES	122	ENSGT00950000183106.a.b.b	ENSGT00940000157383.g.b	ENSGT00940000156657	ENSGT00390000002109	ENSGT01030000234571.b.b.b.a.a.g	ENSGT00390000013183.d.b.a	ENSGT00940000162720.b.b.a	ENSGT00940000153496.b	ENSGT00940000154371.a.b.a #12	ENSGT00620000088774 #15	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000167484 #18	ENSGT00390000006215.a #19	ENSGT00940000154703.j #20	ENSGT00530000064050.b #22	ENSGT00940000164382.b.b	ENSGT00940000160453	ENSGT00940000155788.k	ENSGT00940000158862	ENSGT00940000162435	ENSGT00390000000781.i	ENSGT00940000154686.b	ENSGT00510000049347.g
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES																	ENSGT00530000064050.b.g #22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00530000064050.b.g #22
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	221	emg1 (ENSSGRG00000032572)	zyx (ENSSGRG00000032573)	FAM131B (ENSSGRG00000032575)	CLCN1 (ENSSGRG00000032576)	ENSSGRG00000032578	casp2 (ENSSGRG00000032582)	ENSSGRG00000032586	m6pr (ENSSGRG00000032587)	ccdc106a (ENSSGRG00000032593)	ENSSGRG00000032603 #12	zgc:174935 (ENSSGRG00000032606) #15	them4 (ENSSGRG00000032613) #17	ENSSGRG00000032620 #18	ENSSGRG00000032650 #19	pip5k1ab (ENSSGRG00000032651) #20	psmd4b (ENSSGRG00000032657) #22	vamp1b (ENSSGRG00000032894)	ENSSGRG00000032896	grhl2a (ENSSGRG00000032898)	ncalda (ENSSGRG00000032901)	id4 (ENSSGRG00000032947)	ptpn2a (ENSSGRG00000032949)	SEH1L (ENSSGRG00000032950)	CEP192 (ENSSGRG00000032975)	ENSSGRG00000032985	MRS2 (ENSSGRG00000033040)	ENSSGRG00000033041	CPQ (ENSSGRG00000033042)	ENSSGRG00000033043	ENSSGRG00000033044	ENSSGRG00000033045
Golden-line barbel	MODERN SPECIES	965									TMEM238 (ENSSGRG00000034034)	ENSSGRG00000034033	ENSSGRG00000034031	si:dkey-87o1.2 (ENSSGRG00000034029) #16	ENSSGRG00000034028 #18	ENSSGRG00000034027 #19	pip5k1ab (ENSSGRG00000034015) #20	psmd4b (ENSSGRG00000034014) #22	vamp1b (ENSSGRG00000034013)	ENSSGRG00000034012	grhl2a (ENSSGRG00000034010)	ncalda (ENSSGRG00000033973)	id4 (ENSSGRG00000033972)	ptpn2a (ENSSGRG00000033970)	SEH1L (ENSSGRG00000033968)	CEP192 (ENSSGRG00000033967)	ENSSGRG00000033965	ENSSGRG00000033962	ENSSGRG00000033961	CPQ (ENSSGRG00000033960)
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	195	ENSGT00390000013183.d.b.a.k	ENSGT00390000013183.d.b.a.l	ENSGT00940000162720.b.b.a	ENSGT00940000153496.b.h	ENSGT00620000088774.c #15	ENSGT00390000015721.a #16	ENSGT00940000160047.b #17	ENSGT00940000153496.b.g	ENSGT00940000154371.a.b.a #12	ENSGT00620000088774.d #15	ENSGT00390000015721.b #16	ENSGT00940000160047.a #17	ENSGT00940000167484.a #18	ENSGT00390000006215.a.a #19	ENSGT00940000154703.j.b #20	ENSGT00530000064050.b.h.a #22	ENSGT00940000164382.b.b.a	ENSGT00940000160453.i	ENSGT00940000155788.k.d	ENSGT00940000158862.g	ENSGT00940000162435	ENSGT00390000000781.j	ENSGT00940000154686.b.a	ENSGT00940000153393.A.r.a	ENSGT00510000048187.lb	ENSGT00980000199189	ENSGT00390000009988.b	ENSGT00940000157222.a.l.b	ENSGT00390000018110.g	ENSGT00940000160520.f.a	ENSGT00940000155471.d.f
Cyprininae_a	ANCESTRAL SPECIES	184	ENSGT00940000154273.a.g	ENSGT00950000183106.a.b.b.h	ENSGT00940000157383.g.b.a	ENSGT00940000156657.b	ENSGT00390000002109.b	ENSGT01030000234571.b.b.b.a.a.g.b	ENSGT00390000013183.d.b.a.k	ENSGT00940000153496.b.g	ENSGT00940000154371.a.b.a #12	ENSGT00620000088774.d #15	ENSGT00390000015721.b #16	ENSGT00940000160047.a #17	ENSGT00940000167484.a #18	ENSGT00390000006215.a.a #19	ENSGT00940000154703.j.b #20	ENSGT00530000064050.b.h.a #22	ENSGT00940000164382.b.b.a	ENSGT00940000160453.i	ENSGT00940000155788.k.d	ENSGT00940000158862.g	ENSGT00940000162435.j	ENSGT00390000000781.i	ENSGT00940000154686.b.b.a	ENSGT00940000153393.A.r.b	ENSGT00510000048187.mb	ENSGT00530000063461.A.a	ENSGT00390000009988.a	ENSGT00940000157222.a.l.a	ENSGT00390000018110.h	ENSGT00940000158117.n	ENSGT00940000164478.b.i.a.b
Common carp reference	MODERN SPECIES	47	FAM131B (ENSCCRG00000078710)	CLCN1 (ENSCCRG00000040733)	casp2 (ENSCCRG00000060086)	m6pr (ENSCCRG00000066778)	ENSCCRG00000064244	ccdc106a (ENSCCRG00000004399)	ENSCCRG00000004326	si:dkey-87o1.2 (ENSCCRG00000079148) #16	ENSCCRG00000004362 #12	zgc:174935 (ENSCCRG00000079968) #15	them4 (ENSCCRG00000023355) #17	ENSCCRG00000024132 #18	ENSCCRG00000056700	ENSCCRG00000065307 #19	pip5k1ab (ENSCCRG00000009579) #20	psmd4b (ENSCCRG00000010724) #22	vamp1b (ENSCCRG00000059605)	ENSCCRG00000011647	grhl2a (ENSCCRG00000011654)	ncalda (ENSCCRG00000063359)	id4 (ENSCCRG00000065440)	ENSCCRG00000077227	ENSCCRG00000066663	cep76 (ENSCCRG00000027156)	ptpn2a (ENSCCRG00000027154)	ENSCCRG00000027153	SEH1L (ENSCCRG00000029056)	CEP192 (ENSCCRG00000027132)	ENSCCRG00000028243	ENSCCRG00000028234	ENSCCRG00000080267
Goldfish	MODERN SPECIES	7	FAM131B (ENSCARG00000020592)	CLCN1 (ENSCARG00000019833)	casp2 (ENSCARG00000019787)	m6pr (ENSCARG00000019780)	ENSCARG00000019775	ccdc106a (ENSCARG00000019759)	TMEM238 (ENSCARG00000019750)	ENSCARG00000019731	ENSCARG00000019716 #12	zgc:174935 (ENSCARG00000019710) #15	si:dkey-87o1.2 (ENSCARG00000019707) #16	them4 (ENSCARG00000019698) #17	ENSCARG00000019672 #18	ENSCARG00000019645 #19	pip5k1ab (ENSCARG00000019548) #20	psmd4b (ENSCARG00000019291) #22	vamp1b (ENSCARG00000019268)	ENSCARG00000019260	grhl2a (ENSCARG00000018877)	ncalda (ENSCARG00000018839)	id4 (ENSCARG00000018837)	cep76 (ENSCARG00000018265)	ptpn2a (ENSCARG00000018225)	SEH1L (ENSCARG00000018204)	CEP192 (ENSCARG00000018121)	ENSCARG00000018100	MRS2 (ENSCARG00000018079)	ENSCARG00000018066	CPQ (ENSCARG00000018036)	ENSCARG00000018024	ENSCARG00000018014
Cyprininae	ANCESTRAL SPECIES	844													ENSGT00940000167484.b #18	ENSGT00390000006215.a.b #19	ENSGT00940000154703.j.a #20	ENSGT00530000064050.b.h.b #22	ENSGT00940000164382.b.b.b	ENSGT00940000160453.j	ENSGT00940000155788.k.c	ENSGT00940000158862.h
Goldfish	DUPLICATION
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	35	ENSCARG00000018114	LIN28A (ENSCARG00000018107)	mecr (ENSCARG00000018040)	LIMD1 (ENSCARG00000018013)	ENSCARG00000017998	ENSCARG00000017991	lars2 (ENSCARG00000013812)	TMEM158 (ENSCARG00000013673)	cdcp1a (ENSCARG00000013663)	CLEC3B (ENSCARG00000013656)	CNIH4 (ENSCARG00000013652)	WDR26 (ENSCARG00000013312)	ADCY3 (ENSCARG00000012815)	preb (ENSCARG00000012787)	lyplal1 (ENSCARG00000012781)	psmd4b (ENSCARG00000012525) #22	ENSCARG00000012513	grhl2a (ENSCARG00000012244)	ncalda (ENSCARG00000012233)	ENSCARG00000012227	ENSCARG00000012211	tgfb2 (ENSCARG00000012179)	rrp15 (ENSCARG00000012167)	vegfaa (ENSCARG00000012138)	ENSCARG00000012108 #18	ENSCARG00000012070 #19	pip5k1ab (ENSCARG00000011856) #20	psmd4b (ENSCARG00000011823) #22	rcc1 (ENSCARG00000011813)	DOR (ENSCARG00000011802)	tcea3 (ENSCARG00000011676)
Goldfish	MODERN SPECIES	35	FAM131B (ENSCARG00000026569)	CLCN1 (ENSCARG00000026125)	casp2 (ENSCARG00000026057)	m6pr (ENSCARG00000026036)	ENSCARG00000025991	ccdc106a (ENSCARG00000025965)	TMEM238 (ENSCARG00000025954)	ENSCARG00000025926	zgc:174935 (ENSCARG00000025916) #15	si:dkey-87o1.2 (ENSCARG00000025887) #16	them4 (ENSCARG00000025875) #17	ENSCARG00000025871	ENSCARG00000025810 #18	ENSCARG00000018293 #19	pip5k1ab (ENSCARG00000018255) #20	psmd4b (ENSCARG00000018192) #22	ENSCARG00000018183	grhl2a (ENSCARG00000018145)	ncalda (ENSCARG00000018135)	id4 (ENSCARG00000018122)	ptpn2a (ENSCARG00000018112)	ENSCARG00000018103	SEH1L (ENSCARG00000018078)	CEP192 (ENSCARG00000018016)	ENSCARG00000017994	ENSCARG00000017987	ENSCARG00000017826	ENSCARG00000017810	ctnnb1 (ENSCARG00000017567)	ULK4 (ENSCARG00000017210)	TRAK1 (ENSCARG00000016239)
Goldfish	MODERN SPECIES	35	ADCY3 (ENSCARG00000012815)	preb (ENSCARG00000012787)	lyplal1 (ENSCARG00000012781)	psmd4b (ENSCARG00000012525) #22	ENSCARG00000012513	grhl2a (ENSCARG00000012244)	ncalda (ENSCARG00000012233)	ENSCARG00000012227	ENSCARG00000012211	tgfb2 (ENSCARG00000012179)	rrp15 (ENSCARG00000012167)	vegfaa (ENSCARG00000012138)	ENSCARG00000012108 #18	ENSCARG00000012070 #19	pip5k1ab (ENSCARG00000011856) #20	psmd4b (ENSCARG00000011823) #22	rcc1 (ENSCARG00000011813)	DOR (ENSCARG00000011802)	tcea3 (ENSCARG00000011676)	rragca (ENSCARG00000011650)	GJA9 (ENSCARG00000011645)	rhbdl2 (ENSCARG00000011644)	akirin1 (ENSCARG00000011628)	cnr2 (ENSCARG00000011620)	pnrc2 (ENSCARG00000011616)	DOP1A (ENSCARG00000011471)	SNAP91 (ENSCARG00000011387)	prss35 (ENSCARG00000011383)	pnrc2 (ENSCARG00000011375)	ENSCARG00000011363	cnr2 (ENSCARG00000011356)
Cyprininae_a	ANCESTRAL SPECIES	6	ENSGT00940000156745.b.a	ENSGT00940000168198.a	ENSGT00950000183106.a.b.b.g	ENSGT00940000157383.g.b.b	ENSGT00940000156657.a	ENSGT00390000002109.a	ENSGT01030000234571.b.b.b.a.a.g.a	ENSGT00390000013183.d.b.a.l	ENSGT00940000162720.b.b.a	ENSGT00940000153496.b.h	ENSGT00620000088774.c #15	ENSGT00390000015721.a #16	ENSGT00940000167484.b #18	ENSGT00390000006215.a.b #19	ENSGT00940000154703.j.a #20	ENSGT00530000064050.b.h.b #22	ENSGT00940000164382.b.b.b	ENSGT00940000160453.j	ENSGT00940000155788.k.c	ENSGT00940000158862.h	ENSGT00940000162435.i	ENSGT00390000000781.j	ENSGT00940000154686.b.a	ENSGT00940000153393.A.r.a	ENSGT00510000048187.lb	ENSGT00980000199189	ENSGT00390000009988.b	ENSGT00940000157222.a.l.b	ENSGT00390000018110.g	ENSGT00940000160520.f.a	ENSGT00940000155471.d.f
Common carp reference	MODERN SPECIES	2	ENSCCRG00000003542	casp2 (ENSCCRG00000004051)	m6pr (ENSCCRG00000055112)	ccdc106a (ENSCCRG00000004290)	ENSCCRG00000004286	ENSCCRG00000004317	ENSCCRG00000070058	ENSCCRG00000065601	si:dkey-87o1.2 (ENSCCRG00000053863) #16	zgc:174935 (ENSCCRG00000060924) #15	ENSCCRG00000074446	ENSCCRG00000076676 #18	ENSCCRG00000053975	ENSCCRG00000035090 #19	pip5k1ab (ENSCCRG00000034298) #20	psmd4b (ENSCCRG00000034339) #22	ENSCCRG00000031765	vamp1b (ENSCCRG00000064605)	grhl2a (ENSCCRG00000031734)	ncalda (ENSCCRG00000054987)	id4 (ENSCCRG00000061985)	CEP76 (ENSCCRG00000081120)	ENSCCRG00000070486	ENSCCRG00000076635	ENSCCRG00000056540	ptpn2a (ENSCCRG00000029061)	SEH1L (ENSCCRG00000027145)	CEP192 (ENSCCRG00000029050)	ENSCCRG00000028736	ENSCCRG00000075745	ENSCCRG00000067728
Zebrafish	MODERN SPECIES	7	CCR8 (ENSDARG00000086616)	ENSDARG00000000370	DNAH5 (ENSDARG00000087373)	ADCY2 (ENSDARG00000058392)	ice1 (ENSDARG00000058461)	ENSDARG00000095789	prpf3 (ENSDARG00000086425)	ENSDARG00000078162	ca14 (ENSDARG00000061697)	taf2 (ENSDARG00000102307)	enpp2 (ENSDARG00000011257)	mal2 (ENSDARG00000077637)	COLEC10 (ENSDARG00000104752)	ENSDARG00000105239 #19	pip5k1ab (ENSDARG00000024642) #20	psmd4b (ENSDARG00000023279) #22	vamp1b (ENSDARG00000097576)	ENSDARG00000058351	grhl2a (ENSDARG00000058342)	ncalda (ENSDARG00000070688)	id4 (ENSDARG00000045131)	cep76 (ENSDARG00000058319)	ptpn2a (ENSDARG00000016481)	ENSDARG00000104831	MRS2 (ENSDARG00000062872)	flot1b (ENSDARG00000037998)	tubb5 (ENSDARG00000037997)	mdc1 (ENSDARG00000086764)	ENSDARG00000058248	ENSDARG00000105460	ino80e (ENSDARG00000022939)
Osteoglossocephalai	ANCESTRAL SPECIES	235		ENSGT00390000005125	ENSGT00940000160977.f	ENSGT00940000164926	ENSGT00940000158341.b	ENSGT00940000166692	ENSGT01030000234542.b.a.a.a.a	ENSGT00390000014801	ENSGT00940000154371.a.b #12	ENSGT00390000015721 #16	ENSGT00940000160047 #17	ENSGT00940000161521	ENSGT00940000167484 #18	ENSGT00390000006215 #19	ENSGT00940000154703 #20	ENSGT00530000064050.a ##22	ENSGT00960000189065	ENSGT00940000156524.a ##23	ENSGT00990000206813	ENSGT00530000064050.b #22	ENSGT00940000156524.b #23
Clupeocephala	ANCESTRAL SPECIES	127	ENSGT00960000188661	ENSGT00940000159749	ENSGT00940000177011	ENSGT00950000182844.b.b.b.a.a	ENSGT00940000158881	ENSGT00940000157220.a	ENSGT00950000182957.a.b #24	ENSGT00390000003062 #25	ENSGT00940000165521.b #26	ENSGT00940000165692 #27	ENSGT00940000156178.B #29	ENSGT00940000164368.A ##28	ENSGT00940000164368.B #28	ENSGT00390000006215.b ##19	ENSGT00940000154703.i ##20	ENSGT00530000064050.a ##22	ENSGT00940000156524.a ##23	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366 #30	ENSGT00950000183065.B.e #31	ENSGT00940000162698	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000171931	ENSGT00940000154172.b #37	ENSGT00730000111747.b
Otomorpha	ANCESTRAL SPECIES	601															ENSGT00940000154703.i ##20	ENSGT00530000064050.a ##22	ENSGT00950000182929.B.b.a	ENSGT00950000182929.B.a.b	ENSGT00940000175701
Clupeiformes	ANCESTRAL SPECIES	53	ENSGT00950000182891.b.b.b.b.a	ENSGT00950000182891.b.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00940000177218	ENSGT00940000164936.a	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e	ENSGT00940000154703.i ##20	ENSGT00530000064050.a ##22	ENSGT00950000182929.B.b.a	ENSGT00950000182929.B.a.b	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT01050000244883.B.d	ENSGT00730000111056.h	ENSGT00990000204044	ENSGT00940000158616	ENSGT00940000155256.d.b.b	ENSGT00390000015518	ENSGT00950000182894.D	ENSGT00990000203527.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00940000160704.a.b	ENSGT01050000244814.a.a.b.b.b.a.a.d.b
Atlantic herring	MODERN SPECIES	10	s100a10b (ENSCHAG00000014774)	snx27a (ENSCHAG00000014659)	chrna11 (ENSCHAG00000014329)	rps27.1 (ENSCHAG00000014262)	lrrc71 (ENSCHAG00000014195)	ENSCHAG00000013044	scamp3 (ENSCHAG00000013007)	crabp2b (ENSCHAG00000012995)	mrps21 (ENSCHAG00000012972)	ENSCHAG00000012941	rprd2a (ENSCHAG00000012933)	celf3a (ENSCHAG00000012901)	cers2a (ENSCHAG00000012840)	ENSCHAG00000012826	ENSCHAG00000012508 ##20	psmd4a (ENSCHAG00000012208) ##22	ENSCHAG00000012162	ENSCHAG00000012150	apoa4a (ENSCHAG00000012121)	apoa4a (ENSCHAG00000012113)	ENSCHAG00000012111	tomm40l (ENSCHAG00000011996)	ENSCHAG00000011484	ENSCHAG00000011466	lipea (ENSCHAG00000010782)	slc9a3.2 (ENSCHAG00000009668)	ago3b (ENSCHAG00000001696)	olah (ENSCHAG00000001201)	tekt2 (ENSCHAG00000001121)	si:dkey-211g8.6 (ENSCHAG00000001082)	usf2 (ENSCHAG00000000793)
Denticle herring	MODERN SPECIES	12	trim46b (ENSDCDG00000026385)	s100a10b (ENSDCDG00000026404)	snx27a (ENSDCDG00000026420)	chrna11 (ENSDCDG00000026894)	rps27.1 (ENSDCDG00000026898)	lrrc71 (ENSDCDG00000026899)	ash1l (ENSDCDG00000026916)	ENSDCDG00000027810	scamp3 (ENSDCDG00000027813)	crabp2b (ENSDCDG00000027815)	mrps21 (ENSDCDG00000027816)	ciarta (ENSDCDG00000027818)	ENSDCDG00000027819	celf3a (ENSDCDG00000027831)	cers2a (ENSDCDG00000027900)	psmd4a (ENSDCDG00000027909) ##22	apoea (ENSDCDG00000027971)	apoa4a (ENSDCDG00000028021)	ENSDCDG00000028025	tomm40l (ENSDCDG00000028040)	ENSDCDG00000028055	lipea (ENSDCDG00000028235)	ENSDCDG00000028334	slc9a3.1 (ENSDCDG00000028338)	ago3b (ENSDCDG00000028648)	olah (ENSDCDG00000031575)	tekt2 (ENSDCDG00000031577)	ENSDCDG00000031582	ENSDCDG00000031587	ENSDCDG00000031590	ENSDCDG00000031594
Otophysi	ANCESTRAL SPECIES	64									ENSGT00390000005125	ENSGT00940000164926	ENSGT00940000158341.a	ENSGT01030000234542.b.a.a.a.a	ENSGT00940000154371.a.b.b #12	ENSGT01030000234606.a.b.o	ENSGT00940000154703.i ##20	ENSGT00530000064050.a ##22	ENSGT00940000162287.D	ENSGT00950000182929.B.b.a	ENSGT00950000182929.B.a.b	ENSGT00940000175701	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT00730000111056.h	ENSGT00940000158616	ENSGT00940000155256.d.b.b	ENSGT00390000015518	ENSGT00950000182894.D	ENSGT00990000203527.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00940000160704.a.b	ENSGT01050000244814.a.a.b.b.b.a.a.d.b
Characiphysae	ANCESTRAL SPECIES	75															ENSGT00940000154703.i ##20	ENSGT00530000064050.a ##22	ENSGT00940000162287.D	ENSGT00950000182929.B.b.a	ENSGT00950000182929.B.a.b	ENSGT00940000175701	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT00730000111056.h	ENSGT00940000158616	ENSGT00940000155256.d.b.b	ENSGT00390000015518	ENSGT00950000182894.D	ENSGT00990000203527.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00940000160704.a.b	ENSGT01050000244814.a.a.b.b.b.a.a.d.b
Channel catfish	MODERN SPECIES	3	FAM46A (ENSIPUG00000010747)	zdhhc18b (ENSIPUG00000010726)	grb10a (ENSIPUG00000010680)	ENSIPUG00000010670	ENSIPUG00000010661	ssr2 (ENSIPUG00000010646)	ENSIPUG00000010634	ENSIPUG00000010612	arhgef2 (ENSIPUG00000010417)	tpm3 (ENSIPUG00000010296)	ENSIPUG00000010272	ENSIPUG00000010259	ENSIPUG00000010247	dnali1 (ENSIPUG00000010232)	ENSIPUG00000010194 ##20	psmd4 (ENSIPUG00000010149) ##22	ENSIPUG00000010139	ENSIPUG00000010130	ENSIPUG00000010115	apoa4a (ENSIPUG00000010100)	ENSIPUG00000009869	Zbtb22 (ENSIPUG00000009843)	ctdp1 (ENSIPUG00000009817)	ENSIPUG00000009674	ENSIPUG00000009650	sh3bgrl3 (ENSIPUG00000009631)	TMEM222 (ENSIPUG00000009613)	TPBG (ENSIPUG00000009599)	ENSIPUG00000009574	nr0b2 (ENSIPUG00000009550)	ENSIPUG00000009458
Characiphysae_b	ANCESTRAL SPECIES	61															ENSGT00940000154703.i ##20	ENSGT00530000064050.a ##22	ENSGT00940000162287.D	ENSGT00950000182929.B.b.a	ENSGT00940000175701	ENSGT00950000182929.B.a.b	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT00730000111056.h	ENSGT00940000158616	ENSGT00940000155256.d.b.b	ENSGT00390000015518	ENSGT00950000182894.D	ENSGT00990000203527.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00940000160704.a.b	ENSGT01050000244814.a.a.b.b.b.a.a.d.b
Characoidei	ANCESTRAL SPECIES	256															ENSGT00940000154703.i ##20	ENSGT00530000064050.a ##22	ENSGT00950000182929.B.b.a	ENSGT00950000182929.B.a.b	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT00730000111056.h	ENSGT00940000158616	ENSGT00940000155256.d.b.b	ENSGT00390000015518	ENSGT00950000182894.D	ENSGT00990000203527.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00940000160704.a.b	ENSGT01050000244814.a.a.b.b.b.a.a.d.b	ENSGT01020000230438.B.a.a
Red-bellied piranha	MODERN SPECIES	589						ENSPNAG00000000341	ENSPNAG00000000346	ENSPNAG00000007626	ENSPNAG00000007631	ENSPNAG00000000373	ENSPNAG00000000379	ENSPNAG00000000382	ENSPNAG00000007660	ENSPNAG00000000390	ENSPNAG00000007665 ##20	psmd4a (ENSPNAG00000000400) ##22	ENSPNAG00000000402
Mexicana tetra	MODERN SPECIES	59															PIP5K1A (ENSAMXG00000034297) ##20	psmd4a (ENSAMXG00000043375) ##22	ENSAMXG00000032343	apoea (ENSAMXG00000038445)	apoa4a (ENSAMXG00000036721)	apoa4a (ENSAMXG00000039639)	apoa4a (ENSAMXG00000009598)	apoa4a (ENSAMXG00000009607)	tomm40l (ENSAMXG00000009591)	ENSAMXG00000033980	lipea (ENSAMXG00000009583)	slc9a3.1 (ENSAMXG00000009577)	ago3b (ENSAMXG00000009571)	ENSAMXG00000033015	olah (ENSAMXG00000033072)	tekt2 (ENSAMXG00000035414)	ENSAMXG00000024913
Electric eel	MODERN SPECIES	171														ENSEEEG00000006587	ENSEEEG00000006588 ##20	psmd4a (ENSEEEG00000006589) ##22	ENSEEEG00000006609	apoea (ENSEEEG00000006610)	ENSEEEG00000006611	apoa4a (ENSEEEG00000006630)	tomm40l (ENSEEEG00000006650)	lipea (ENSEEEG00000006653)	ENSEEEG00000006719	slc9a3.1 (ENSEEEG00000006745)	ago3b (ENSEEEG00000006915)	olah (ENSEEEG00000007323)	tekt2 (ENSEEEG00000007327)	ENSEEEG00000007331	si:dkey-211g8.6 (ENSEEEG00000007333)	usf2 (ENSEEEG00000007336)	ENSEEEG00000007339
Cyprinoidei	ANCESTRAL SPECIES	33	ENSGT00940000160140.a.a	ENSGT01090000260033.a.a.b.b.b	ENSGT01090000260033.a.a.b.b.a	ENSGT00940000155909.o.b	ENSGT00950000183007.b.f.i.a.a.b	ENSGT00390000005125	ENSGT00940000160977.f	ENSGT00940000164926	ENSGT00940000158341.a	ENSGT01030000234542.b.a.a.a.a	ENSGT00940000154371.a.b.b #12	ENSGT01030000234606.a.b.o	ENSGT00990000209965	ENSGT00390000006215.b ##19	ENSGT00940000171101	ENSGT00530000064050.a ##22	ENSGT00940000162287.D	ENSGT00950000182929.B.b.a	ENSGT00950000182929.B.a.b	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT00730000111056.h	ENSGT00940000158616.n	ENSGT00940000158616.m	ENSGT00940000155256.d.b.b	ENSGT00390000015518	ENSGT00950000182894.D	ENSGT00990000203527.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00940000167655	ENSGT00940000160704.a.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	363		ENSGT01090000260033.a.a.b.b.b	ENSGT01090000260033.a.a.b.b.a.c.a.a	ENSGT01090000260033.a.a.b.b.a.c.b	ENSGT00940000155909.o.b.b	ENSGT00950000183007.b.f.i.b	ENSGT00390000005125.r.a	ENSGT00940000160977.f.c	ENSGT00940000164926.j	ENSGT00940000158341.a.h	ENSGT01030000234542.b.a.a.a.a.j	ENSGT00940000154371.a.b.b.b #12	ENSGT01030000234606.a.b.o	ENSGT00990000209965.a	ENSGT00940000171101.a	ENSGT00530000064050.a.a ##22	ENSGT00940000162287.D.g.b	ENSGT00950000182929.B.b.a.e	ENSGT00390000003308.a.b.b	ENSGT00940000165835.b.b	ENSGT00730000111056.h.a	ENSGT00940000158616.n.b	ENSGT00940000158616.m.b	ENSGT00940000155256.d.b.b.o	ENSGT00390000015518.k	ENSGT00990000203527.b.b	ENSGT00990000203527.a.a.a.e.b.q.b	ENSGT00940000167655.o	ENSGT00940000160704.a.b.a	ENSGT01050000244814.a.a.b.b.b.a.a.d.b.a.a	ENSGT01020000230438.B.a.a.r.a.b.a
Cyprininae_a	ANCESTRAL SPECIES	1	ENSGT00940000157594.f	ENSGT00940000160140.a.a.a	ENSGT01090000260033.a.a.b.b.a.c.a.b	ENSGT01030000234589.g.b.b.c	ENSGT00940000155909.o.b.b	ENSGT00950000183007.b.f.i.b	ENSGT00390000005125.r.a	ENSGT00940000160977.f.c	ENSGT00940000164926.j	ENSGT00940000158341.a.h	ENSGT01030000234542.b.a.a.a.a.j	ENSGT00940000154371.a.b.b.b #12	ENSGT01030000234606.a.b.o	ENSGT00990000209965.a	ENSGT00940000171101.a	ENSGT00530000064050.a.a ##22	ENSGT00940000162287.D.g.b	ENSGT00950000182929.B.b.a.e	ENSGT00940000175701	ENSGT00390000003308.a.b.b	ENSGT00940000165835.b.b	ENSGT00730000111056.h.a	ENSGT00940000158616.n.b	ENSGT00940000158616.m.b	ENSGT00940000155256.d.b.b.o	ENSGT00390000015518.k	ENSGT00990000203527.b.b	ENSGT00990000203527.a.a.a.e.b.r	ENSGT00940000160704.a.b.a	ENSGT01050000244814.a.a.b.b.b.a.a.d.b.a.a	ENSGT01020000230438.B.a.a.r.b.b
Golden-line barbel	MODERN SPECIES	267					ENSSGRG00000037229	ssr2 (ENSSGRG00000037225)	ENSSGRG00000037223	ENSSGRG00000037221	arhgef1a (ENSSGRG00000037219)	ENSSGRG00000037218	tpm3 (ENSSGRG00000033544)	ENSSGRG00000033514 #12	ENSSGRG00000033511	ENSSGRG00000033510	pip5k1aa (ENSSGRG00000033464)	ENSSGRG00000033272 ##22	apoea (ENSSGRG00000033270)	apoa4a (ENSSGRG00000033269)	apoea (ENSSGRG00000033268)	ENSSGRG00000033259	ENSSGRG00000032474	lipea (ENSSGRG00000032433)	slc9a3.2 (ENSSGRG00000032427)	slc9a3.1 (ENSSGRG00000032426)	ago3b (ENSSGRG00000032080)	olah (ENSSGRG00000032077)	ENSSGRG00000032076	si:dkey-211g8.6 (ENSSGRG00000032075)	ENSSGRG00000032074	ENSSGRG00000032073	lim2.4 (ENSSGRG00000032069)
Common carp reference	MODERN SPECIES	31	ENSCCRG00000067693	ENSCCRG00000036032	grb10a (ENSCCRG00000041639)	ENSCCRG00000078707	ssr2 (ENSCCRG00000065725)	ENSCCRG00000027723	ENSCCRG00000076918	arhgef1a (ENSCCRG00000020516)	tpm3 (ENSCCRG00000020010)	ENSCCRG00000079633 #12	ENSCCRG00000068498	pip5k1aa (ENSCCRG00000007232)	ENSCCRG00000072965	apoea (ENSCCRG00000066161)	ENSCCRG00000057621	ENSCCRG00000007230 ##22	tomm40l (ENSCCRG00000059151)	ENSCCRG00000057458	lipea (ENSCCRG00000007486)	slc9a3.2 (ENSCCRG00000007491)	slc9a3.1 (ENSCCRG00000007502)	olah (ENSCCRG00000016257)	ENSCCRG00000016266	ago3b (ENSCCRG00000072787)	ENSCCRG00000080195	si:dkey-211g8.7 (ENSCCRG00000016272)	usf2 (ENSCCRG00000016286)	lim2.4 (ENSCCRG00000017198)	lim2.4 (ENSCCRG00000035438)	lim2.4 (ENSCCRG00000067794)	ENSCCRG00000061442
Goldfish	MODERN SPECIES	38	ENSCARG00000065767	ENSCARG00000065758	ENSCARG00000065749	grb10a (ENSCARG00000063852)	ENSCARG00000063733	ssr2 (ENSCARG00000063716)	ENSCARG00000063705	ENSCARG00000063690	ENSCARG00000063680	arhgef1a (ENSCARG00000062581)	tpm3 (ENSCARG00000062276)	ENSCARG00000062257 #12	ENSCARG00000062244	ENSCARG00000062234	pip5k1aa (ENSCARG00000062166)	ENSCARG00000062062 ##22	ENSCARG00000062010	apoea (ENSCARG00000061987)	tomm40l (ENSCARG00000061945)	ENSCARG00000061853	lipea (ENSCARG00000061800)	slc9a3.2 (ENSCARG00000060671)	slc9a3.1 (ENSCARG00000059751)	ago3b (ENSCARG00000058392)	ENSCARG00000058362	usf2 (ENSCARG00000058324)	lim2.4 (ENSCARG00000058307)	ENSCARG00000058289	GALR1 (ENSCARG00000058280)	ENSCARG00000058252	ENSCARG00000058242
Cyprininae	ANCESTRAL SPECIES	115	ENSGT00940000157594.e	ENSGT00940000160140.a.a.b	ENSGT01100000263549.j.b.a.a	ENSGT01030000234589.g.b.b.d	ENSGT01100000263549.j.b.b	ENSGT01090000260033.a.a.b.a.f.b	ENSGT00940000155909.o.b.a	ENSGT00950000183007.b.f.i.a.a.b	ENSGT00390000005125.s	ENSGT00940000164926.i	ENSGT00940000158341.a.g	ENSGT01030000234542.b.a.a.a.a.i	ENSGT00940000154371.a.b.b.a #12	ENSGT00990000209965.b	ENSGT00940000171101.b	ENSGT00530000064050.a.b ##22	ENSGT00940000162287.D.g.a	ENSGT00950000182929.B.b.a.f	ENSGT00950000182929.B.a.b	ENSGT00390000003308.a.b.a	ENSGT00940000165835.b.a	ENSGT00730000111056.h.b	ENSGT00940000158616.n.a	ENSGT00940000158616.m.a.a	ENSGT00940000155256.d.b.b.p	ENSGT00390000015518.l	ENSGT00950000182894.D	ENSGT00990000203527.b.a	ENSGT00990000203527.a.a.a.e.b.r	ENSGT00990000203527.a.a.a.e.b.q.a	ENSGT00940000160704.a.b.b
Goldfish	MODERN SPECIES	10	ENSCARG00000025923	ENSCARG00000025928	ENSCARG00000025932	ENSCARG00000025938	grb10a (ENSCARG00000026077)	irgf1 (ENSCARG00000029272)	ssr2 (ENSCARG00000029276)	ENSCARG00000029292	ENSCARG00000029296	arhgef1a (ENSCARG00000029322)	tpm3 (ENSCARG00000029520)	ENSCARG00000030338 #12	ENSCARG00000030344	ENSCARG00000030354	pip5k1aa (ENSCARG00000030362)	ENSCARG00000030386 ##22	ENSCARG00000030468	apoea (ENSCARG00000030475)	apoa4a (ENSCARG00000030492)	tomm40l (ENSCARG00000030512)	ENSCARG00000030591	lipea (ENSCARG00000030639)	slc9a3.2 (ENSCARG00000030682)	slc9a3.1 (ENSCARG00000030972)	ago3b (ENSCARG00000031054)	olah (ENSCARG00000031433)	tekt2 (ENSCARG00000031451)	ENSCARG00000031487	si:dkey-211g8.7 (ENSCARG00000031514)	si:dkey-211g8.6 (ENSCARG00000031518)	ENSCARG00000031530
Cyprininae_a	ANCESTRAL SPECIES	52	ENSGT01100000263549.j.b.b	ENSGT01030000234589.g.b.b.d.a	ENSGT01090000260033.a.a.b.a.f.a	ENSGT01030000234589.g.b.b.d.b.b	ENSGT01090000260033.a.a.b.a.f.b	ENSGT01090000260033.a.a.b.b.a.d.a.a	ENSGT00940000155909.o.b.a	ENSGT00950000183007.b.f.i.a.a.b	ENSGT00940000160977.f.d	ENSGT00940000164926.i	ENSGT00940000158341.a.g	ENSGT01030000234542.b.a.a.a.a.i	ENSGT00940000154371.a.b.b.a #12	ENSGT00990000209965.b	ENSGT00940000171101.b	ENSGT00530000064050.a.b ##22	ENSGT00940000162287.D.g.a	ENSGT00950000182929.B.b.a.f	ENSGT00950000182929.B.a.b	ENSGT00390000003308.a.b.a	ENSGT00940000165835.b.a	ENSGT00730000111056.h.b	ENSGT00940000158616.n.a	ENSGT00940000158616.m.a.a	ENSGT00940000155256.d.b.b.p	ENSGT00390000015518.l	ENSGT00950000182894.D	ENSGT00990000203527.b.a	ENSGT00990000203527.a.a.a.e.b.q.a	ENSGT00940000160704.a.b.b	ENSGT01050000244814.a.a.b.b.b.a.a.d.b.a.b
Common carp reference	MODERN SPECIES	12	ENSCCRG00000065398	ENSCCRG00000064908	ENSCCRG00000073836	ENSCCRG00000065567	ENSCCRG00000067865	grb10a (ENSCCRG00000025521)	irgf1 (ENSCCRG00000003669)	ENSCCRG00000003648	ENSCCRG00000081187	arhgef1a (ENSCCRG00000003792)	tpm3 (ENSCCRG00000062024)	ENSCCRG00000005102 #12	ENSCCRG00000005106	ENSCCRG00000076576	pip5k1aa (ENSCCRG00000017213)	ENSCCRG00000017217 ##22	ENSCCRG00000065225	apoea (ENSCCRG00000017226)	apoa4a (ENSCCRG00000017227)	tomm40l (ENSCCRG00000017231)	ENSCCRG00000073509	lipea (ENSCCRG00000017249)	slc9a3.2 (ENSCCRG00000017534)	slc9a3.1 (ENSCCRG00000017548)	ago3b (ENSCCRG00000017902)	olah (ENSCCRG00000020515)	tekt2 (ENSCCRG00000020522)	ENSCCRG00000020532	si:dkey-211g8.6 (ENSCCRG00000080049)	usf2 (ENSCCRG00000020560)	ENSCCRG00000020572
Golden-line barbel	MODERN SPECIES	1007	ENSSGRG00000041316	ENSSGRG00000041317	ENSSGRG00000041318	ENSSGRG00000041319	ENSSGRG00000041320	grb10a (ENSSGRG00000041350)	SSR2 (ENSSGRG00000042111)	ENSSGRG00000042119	arhgef1a (ENSSGRG00000042128)	tpm3 (ENSSGRG00000042846)	ENSSGRG00000043774 #12	ENSSGRG00000043775 #12	ENSSGRG00000043776 #12	ENSSGRG00000043777	pip5k1aa (ENSSGRG00000043779)	PSMD4 (ENSSGRG00000043814) ##22	ENSSGRG00000043976	apoea (ENSSGRG00000043977)	apoa4a (ENSSGRG00000043978)	ENSSGRG00000043997	lipea (ENSSGRG00000044842)	slc9a3.2 (ENSSGRG00000044845)	slc9a3.1 (ENSSGRG00000044847)
Zebrafish	DUPLICATION
Zebrafish	MODERN SPECIES	10	eepd1 (ENSDARG00000071116)	ENSDARG00000101686	ENSDARG00000062828	ENSDARG00000062820	ssr2 (ENSDARG00000005230)	ENSDARG00000089983	ENSDARG00000034210	ENSDARG00000095458	arhgef1a (ENSDARG00000040380)	tpm3 (ENSDARG00000005162)	ENSDARG00000074930 #12	ENSDARG00000101721	ENSDARG00000103322	ENSDARG00000100535 ##19	pip5k1aa (ENSDARG00000100396)	psmd4a (ENSDARG00000101295) ##22	ENSDARG00000101029	PSMD4 (ENSDARG00000104952) ##22	apoea (ENSDARG00000102004)	apoa4a (ENSDARG00000101160)	tomm40l (ENSDARG00000036721)	ENSDARG00000096273	lipea (ENSDARG00000063037)	slc9a3.2 (ENSDARG00000036722)	slc9a3.1 (ENSDARG00000058498)	ago3b (ENSDARG00000063079)	olah (ENSDARG00000058502)	tekt2 (ENSDARG00000028973)	ENSDARG00000087828	si:dkey-211g8.7 (ENSDARG00000058535)	si:dkey-211g8.6 (ENSDARG00000063088)
Zebrafish	MODERN SPECIES	10	ENSDARG00000062828	ENSDARG00000062820	ssr2 (ENSDARG00000005230)	ENSDARG00000089983	ENSDARG00000034210	ENSDARG00000095458	arhgef1a (ENSDARG00000040380)	tpm3 (ENSDARG00000005162)	ENSDARG00000074930 #12	ENSDARG00000101721	ENSDARG00000103322	ENSDARG00000100535 ##19	pip5k1aa (ENSDARG00000100396)	psmd4a (ENSDARG00000101295) ##22	ENSDARG00000101029	PSMD4 (ENSDARG00000104952) ##22	apoea (ENSDARG00000102004)	apoa4a (ENSDARG00000101160)	tomm40l (ENSDARG00000036721)	ENSDARG00000096273	lipea (ENSDARG00000063037)	slc9a3.2 (ENSDARG00000036722)	slc9a3.1 (ENSDARG00000058498)	ago3b (ENSDARG00000063079)	olah (ENSDARG00000058502)	tekt2 (ENSDARG00000028973)	ENSDARG00000087828	si:dkey-211g8.7 (ENSDARG00000058535)	si:dkey-211g8.6 (ENSDARG00000063088)	si:dkey-211g8.8 (ENSDARG00000096311)	ENSDARG00000092259
Euteleosteomorpha	ANCESTRAL SPECIES	40										ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00940000154703.i ##20	ENSGT00530000064050.a ##22	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000177151	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b
Acanthomorphata	ANCESTRAL SPECIES	22	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00390000013102.a.b	ENSGT00940000171595	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b ##19	ENSGT00940000154703.i ##20	ENSGT00530000064050.a ##22	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681
Euacanthomorphacea	ANCESTRAL SPECIES		ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00940000154703.i ##20	ENSGT00530000064050.a ##22	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681
Percomorphaceae	ANCESTRAL SPECIES	10	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b ##19	ENSGT00940000154703.i ##20	ENSGT00530000064050.a ##22	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681
Percomorphaceae_B	ANCESTRAL SPECIES	15	ENSGT00940000157485	ENSGT00940000177924	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b ##19	ENSGT00940000154703.i ##20	ENSGT00530000064050.a ##22	ENSGT00940000178054	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b
Percomorphaceae_C	ANCESTRAL SPECIES	15	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b ##19	ENSGT00940000154703.i ##20	ENSGT00950000183155.a.b.a.a.b.c.b	ENSGT00950000183155.a.b.a.a.b.c.a	ENSGT00940000171101	ENSGT00530000064050.a ##22	ENSGT00940000178054	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b
Percomorphaceae_D	ANCESTRAL SPECIES	14	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00950000183155.a.b.a.a.b.c.b	ENSGT00950000183155.a.b.a.a.b.c.a	ENSGT00940000171101	ENSGT00390000006215.b ##19	ENSGT00940000154703.i ##20	ENSGT00530000064050.a ##22	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681
Anabantaria	ANCESTRAL SPECIES	16	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00940000154703.i ##20	ENSGT00950000183155.a.b.a.a.b.c.a	ENSGT00940000171101	ENSGT00530000064050.a ##22	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681
Anabantoidei	ANCESTRAL SPECIES	19	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00950000183155.a.b.a.a.b.c.a	ENSGT00950000183155.a.b.a.a.b.d	ENSGT00940000171101	ENSGT00530000064050.a ##22	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681
Climbing perch	MODERN SPECIES	2	ENSATEG00000010495	PRCC (ENSATEG00000025563)	ENSATEG00000029234	MRPL24 (ENSATEG00000010477)	ENSATEG00000010472	ENSATEG00000010406	ENSATEG00000010376	ENSATEG00000026875	ENSATEG00000010310	ENSATEG00000010287	ENSATEG00000010268	ENSATEG00000010224	ENSATEG00000010203	ENSATEG00000010183	ENSATEG00000010129	ENSATEG00000010117 ##22	znf687b (ENSATEG00000010098) ##23	aqp10b (ENSATEG00000009841) ##28	hax1 (ENSATEG00000009809)	ubap2l (ENSATEG00000009768)	C1orf43 (ENSATEG00000009719) ##30	ENSATEG00000028947 ##31	cgnb (ENSATEG00000009585) ##32	pygo2 (ENSATEG00000009563)	ENSATEG00000009557 ##33	s100s (ENSATEG00000009549)	s100u (ENSATEG00000029655)	ENSATEG00000026985 ##37	ENSATEG00000009526	ENSATEG00000009515	ENSATEG00000009499
Siamese fighting fish	MODERN SPECIES	2	si:dkey-266f7.9 (ENSBSLG00000014420)	ENSBSLG00000014428	mrpl9 (ENSBSLG00000014439)	prcc (ENSBSLG00000014447)	HDGF (ENSBSLG00000014652)	mrpl24 (ENSBSLG00000014676)	ENSBSLG00000014691	mef2d (ENSBSLG00000014742)	tmem79a (ENSBSLG00000014819)	ENSBSLG00000014824	ENSBSLG00000014849	ndufv1 (ENSBSLG00000014918)	ENSBSLG00000015548	ENSBSLG00000015563	pip5k1aa (ENSBSLG00000015580)	psmd4a (ENSBSLG00000015665) ##22	znf687b (ENSBSLG00000015865) ##23	aqp10b (ENSBSLG00000015875) ##28	hax1 (ENSBSLG00000015884)	ubap2l (ENSBSLG00000015899)	C1orf43 (ENSBSLG00000016003) ##30	ENSBSLG00000016008 ##31	pygo2 (ENSBSLG00000016016)	SHE (ENSBSLG00000016017) ##33	s100s (ENSBSLG00000016024)	ENSBSLG00000016029	ENSBSLG00000016034 ##37	ENSBSLG00000016041	cks1b (ENSBSLG00000016050)	ENSBSLG00000016062	efna1a (ENSBSLG00000016065)
Zig-zag eel	MODERN SPECIES	2	ENSMAMG00000016085	PRCC (ENSMAMG00000016095)	ENSMAMG00000025205	MRPL24 (ENSMAMG00000028466)	ENSMAMG00000016131	ENSMAMG00000016197	ENSMAMG00000016215	ENSMAMG00000016304	ENSMAMG00000027787	ENSMAMG00000016335	ENSMAMG00000016351	ENSMAMG00000016428	ENSMAMG00000016435	ENSMAMG00000016460	PIP5K1A (ENSMAMG00000016488) ##20	ENSMAMG00000016545 ##22	znf687b (ENSMAMG00000016586) ##23	aqp10b (ENSMAMG00000016569) ##28	hax1 (ENSMAMG00000025191)	ubap2l (ENSMAMG00000016602)	C1orf43 (ENSMAMG00000016647) ##30	ENSMAMG00000025598 ##31	cgnb (ENSMAMG00000016664) ##32	pygo2 (ENSMAMG00000016672)	ENSMAMG00000016681 ##33	s100s (ENSMAMG00000016687)	ENSMAMG00000024745	ENSMAMG00000024973 ##37	ENSMAMG00000016808	cks1b (ENSMAMG00000026635)	ENSMAMG00000016832
Carangaria	ANCESTRAL SPECIES	14	ENSGT00940000177924	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b ##19	ENSGT00940000171101	ENSGT00940000154703.i ##20	ENSGT00530000064050.a ##22	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681
Carangaria_A	ANCESTRAL SPECIES	16	ENSGT00940000157343.a.a.d	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00950000183155.a.b.a.a.b.c.b	ENSGT00950000183155.a.b.a.a.b.c.a	ENSGT00950000183155.a.b.a.a.b.d	ENSGT00390000006215.b ##19	ENSGT00940000171101	ENSGT00530000064050.a ##22	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681
Seriola	ANCESTRAL SPECIES	12	ENSGT00390000014542	ENSGT00940000157343.a.a.d	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00950000183155.a.b.a.a.b.c.a	ENSGT00950000183155.a.b.a.a.b.c.b	ENSGT00390000006215.b ##19	ENSGT00940000171101	ENSGT00530000064050.a ##22	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681
Greater amberjack	MODERN SPECIES	48	ENSSDUG00000014617	mef2d (ENSSDUG00000014641)	tmem79a (ENSSDUG00000014747)	ENSSDUG00000014755	RPS19 (ENSSDUG00000014770)	ENSSDUG00000014978	ENSSDUG00000017318	ENSSDUG00000017371	ndufv1 (ENSSDUG00000017383)	ENSSDUG00000017410	ENSSDUG00000017416	ENSSDUG00000017424	ENSSDUG00000017434	ENSSDUG00000017446 ##19	pip5k1aa (ENSSDUG00000017460)	psmd4a (ENSSDUG00000017529) ##22	znf687b (ENSSDUG00000017625) ##23	aqp10b (ENSSDUG00000017662) ##28	hax1 (ENSSDUG00000017668)	ubap2l (ENSSDUG00000017703)	C1orf43 (ENSSDUG00000017804) ##30	ENSSDUG00000017832 ##31	cgnb (ENSSDUG00000017863) ##32	pygo2 (ENSSDUG00000017956)	SHE (ENSSDUG00000017964) ##33	s100s (ENSSDUG00000017975)	s100u (ENSSDUG00000018011)	ENSSDUG00000018030 ##37	ENSSDUG00000018041	cks1b (ENSSDUG00000018075)	ENSSDUG00000018087
Yellowtail amberjack	MODERN SPECIES	2834	mrpl24 (ENSSLDG00000015607)	ENSSLDG00000015583	mef2d (ENSSLDG00000015496)	ENSSLDG00000015454	RPS19 (ENSSLDG00000015400)	ENSSLDG00000015432	ENSSLDG00000015348	ENSSLDG00000015321	ndufv1 (ENSSLDG00000015292)	ENSSLDG00000015275	ENSSLDG00000015262	ENSSLDG00000015246	ENSSLDG00000015233	ENSSLDG00000015213 ##19	pip5k1aa (ENSSLDG00000015196)	psmd4a (ENSSLDG00000015045) ##22	znf687b (ENSSLDG00000014947) ##23	aqp10b (ENSSLDG00000014929) ##28	hax1 (ENSSLDG00000014903)	ubap2l (ENSSLDG00000014825)	C1orf43 (ENSSLDG00000014790) ##30	ENSSLDG00000014772 ##31	cgnb (ENSSLDG00000014735) ##32	pygo2 (ENSSLDG00000014714)	SHE (ENSSLDG00000014704) ##33	s100s (ENSSLDG00000014694)	s100u (ENSSLDG00000014685)	ENSSLDG00000014676 ##37	ENSSLDG00000014665	cks1b (ENSSLDG00000014648)	ENSSLDG00000014634
Barramundi perch	MODERN SPECIES	279						ENSLCAG00010022686	ENSLCAG00010022685	RPS19 (ENSLCAG00010022675)	ENSLCAG00010022668	ENSLCAG00010022663	ENSLCAG00010022651	ndufv1 (ENSLCAG00010022642)	ENSLCAG00010022636	ENSLCAG00010022630	pip5k1aa (ENSLCAG00010022604)	psmd4a (ENSLCAG00010022594) ##22	znf687b (ENSLCAG00010022589) ##23	aqp10b (ENSLCAG00010022583) ##28	hax1 (ENSLCAG00010022581)	C1orf43 (ENSLCAG00010022574) ##30	ENSLCAG00010022566 ##31	cgnb (ENSLCAG00010022529) ##32	pygo2 (ENSLCAG00010022519)	SHE (ENSLCAG00010022518) ##33	ENSLCAG00010022515	s100s (ENSLCAG00010022513)	s100u (ENSLCAG00010022510)	ENSLCAG00010022508 ##37	ENSLCAG00010022506	cks1b (ENSLCAG00010022503)	ENSLCAG00010022502
Pleuronectoidei	ANCESTRAL SPECIES	54	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b ##19	ENSGT00940000154703.i ##20	ENSGT00530000064050.a ##22	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000177151	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681
Tongue sole	MODERN SPECIES	9	mrpl24 (ENSCSEG00000006937)	HDGF (ENSCSEG00000006941)	ENSCSEG00000006951	prcc (ENSCSEG00000006958)	mrpl9 (ENSCSEG00000006967)	ENSCSEG00000006971	si:dkey-266f7.9 (ENSCSEG00000006976)	rpz2 (ENSCSEG00000006984)	krit1 (ENSCSEG00000006989)	cyp51 (ENSCSEG00000007021)	ENSCSEG00000007110	ENSCSEG00000007119	ENSCSEG00000007128	ENSCSEG00000007135 ##19	PIP5K1A (ENSCSEG00000007140) ##20	psmd4a (ENSCSEG00000007157) ##22	znf687b (ENSCSEG00000007216) ##23	aqp10b (ENSCSEG00000007250) ##28	hax1 (ENSCSEG00000007258)	ubap2l (ENSCSEG00000007266)	C1orf43 (ENSCSEG00000007289) ##30	ENSCSEG00000007311 ##31	cgnb (ENSCSEG00000007335) ##32	pygo2 (ENSCSEG00000007361)	SHE (ENSCSEG00000007372) ##33	s100s (ENSCSEG00000007377)	s100u (ENSCSEG00000007382)	ENSCSEG00000007384	ENSCSEG00000007401	cks1b (ENSCSEG00000007408)	ENSCSEG00000007421
Turbot	MODERN SPECIES	14	ENSSMAG00000004372	MRPL24 (ENSSMAG00000026141)	ENSSMAG00000004294	ENSSMAG00000004153	ENSSMAG00000004131	ENSSMAG00000027888	ENSSMAG00000036293	ENSSMAG00000026760	ENSSMAG00000004085	ENSSMAG00000004049	ENSSMAG00000004042	ENSSMAG00000004017	ENSSMAG00000004008	ENSSMAG00000003990	PIP5K1A (ENSSMAG00000003911) ##20	ENSSMAG00000003880 ##22	znf687b (ENSSMAG00000003811) ##23	aqp10b (ENSSMAG00000003704) ##28	ENSSMAG00000003690	hax1 (ENSSMAG00000003665)	ubap2l (ENSSMAG00000003456)	C1orf43 (ENSSMAG00000003418) ##30	ENSSMAG00000003389 ##31	cgnb (ENSSMAG00000003356) ##32	pygo2 (ENSSMAG00000026931)	ENSSMAG00000003330 ##33	s100u (ENSSMAG00000035207)	s100s (ENSSMAG00000003264)	ENSSMAG00000003243	ENSSMAG00000025169	ENSSMAG00000026861
Eupercaria	ANCESTRAL SPECIES	11	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b ##19	ENSGT00940000171101	ENSGT00530000064050.a ##22	ENSGT00940000178054	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b
Tetraodontidae	ANCESTRAL SPECIES	60															ENSGT00940000171101	ENSGT00530000064050.a ##22	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000177151	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b
Tetraodon	MODERN SPECIES	16	TGFBR2 (ENSTNIG00000013820)	ENSTNIG00000013818	eomesa (ENSTNIG00000017582)	b4galt6 (ENSTNIG00000017581)	SLC4A7 (ENSTNIG00000017580)	HERPUD2 (ENSTNIG00000017579)	ENSTNIG00000001374	ADGRB1 (ENSTNIG00000017578)	ENSTNIG00000017577	hnrnpr (ENSTNIG00000017576)	dnajc8 (ENSTNIG00000017575)	ENSTNIG00000017574	clk2a (ENSTNIG00000017573)	ENSTNIG00000017572 ##19	pip5k1aa (ENSTNIG00000017571)	psmd4a (ENSTNIG00000017570) ##22	znf687b (ENSTNIG00000017569) ##23	aqp10b (ENSTNIG00000017568) ##28	hax1 (ENSTNIG00000000666)	ubap2l (ENSTNIG00000017567)	C1orf43 (ENSTNIG00000017566) ##30	ENSTNIG00000017565 ##31	cgnb (ENSTNIG00000017564) ##32	pygo2 (ENSTNIG00000017563)	SHE (ENSTNIG00000017562) ##33	s100s (ENSTNIG00000017561)	ENSTNIG00000017560 ##37	ENSTNIG00000017559	efna1a (ENSTNIG00000017558)	dpm3 (ENSTNIG00000001321)	trim46b (ENSTNIG00000017557)
Fugu	MODERN SPECIES	3	ENSTRUG00000007482	TGFBR2 (ENSTRUG00000007583)	OSBPL10 (ENSTRUG00000007950)	ENSTRUG00000023979	zdhhc3b (ENSTRUG00000008146)	exosc7 (ENSTRUG00000008320)	CLEC3B (ENSTRUG00000008479)	ENSTRUG00000008547	ADGRB1 (ENSTRUG00000029303)	ENSTRUG00000008805	hnrnpr (ENSTRUG00000008817)	dnajc8 (ENSTRUG00000008994)	ENSTRUG00000022589	clk2a (ENSTRUG00000009138)	pip5k1aa (ENSTRUG00000009274)	psmd4a (ENSTRUG00000024969) ##22	znf687b (ENSTRUG00000009576) ##23	aqp10b (ENSTRUG00000009704) ##28	ubap2l (ENSTRUG00000009888)	C1orf43 (ENSTRUG00000010377) ##30	ENSTRUG00000031770 ##31	cgnb (ENSTRUG00000010526) ##32	pygo2 (ENSTRUG00000031215)	SHE (ENSTRUG00000020280) ##33	s100s (ENSTRUG00000028186)	ENSTRUG00000031177	SHE (ENSTRUG00000030513) ##33	s100s (ENSTRUG00000010694)	s100u (ENSTRUG00000023841)	ENSTRUG00000032151	ENSTRUG00000025884
Eupecaria_A	ANCESTRAL SPECIES	12	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00950000183155.a.b.a.a.b.c.b	ENSGT00950000183155.a.b.a.a.b.c.a	ENSGT00390000006215.b ##19	ENSGT00940000171101	ENSGT00530000064050.a ##22	ENSGT00940000178054	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b
Ballan wrasse	MODERN SPECIES	312	HDGF (ENSLBEG00000025419)	mrpl24 (ENSLBEG00000025438)	ENSLBEG00000025459	KLHL10 (ENSLBEG00000025511)	mef2d (ENSLBEG00000025595)	tmem79a (ENSLBEG00000025723)	ENSLBEG00000025741	RPS19 (ENSLBEG00000025772)	ENSLBEG00000025795	ENSLBEG00000025808	ENSLBEG00000025824	ndufv1 (ENSLBEG00000025852)	ENSLBEG00000025889	ENSLBEG00000025904 ##19	pip5k1aa (ENSLBEG00000025921)	psmd4a (ENSLBEG00000025965) ##22	znf687b (ENSLBEG00000026012) ##23	aqp10b (ENSLBEG00000026065) ##28	hax1 (ENSLBEG00000026107)	ubap2l (ENSLBEG00000026186)	C1orf43 (ENSLBEG00000026343) ##30	ENSLBEG00000026314 ##31	cgnb (ENSLBEG00000026368) ##32	pygo2 (ENSLBEG00000026408)	SHE (ENSLBEG00000026417) ##33	s100s (ENSLBEG00000026439)	s100u (ENSLBEG00000026449)	ENSLBEG00000026460 ##37	ENSLBEG00000026517	cks1b (ENSLBEG00000026546)	ENSLBEG00000026565
Eupecaria_B	ANCESTRAL SPECIES	12	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00950000183155.a.b.a.a.b.c.b	ENSGT00950000183155.a.b.a.a.b.c.a	ENSGT00940000171101	ENSGT00530000064050.a ##22	ENSGT00940000178054	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b
Perciformes	ANCESTRAL SPECIES	11	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00950000183155.a.b.a.a.b.c.b	ENSGT00950000183155.a.b.a.a.b.c.a	ENSGT00940000171101	ENSGT00530000064050.a ##22	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681
Cottioidei	ANCESTRAL SPECIES	16	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00950000183155.a.b.a.a.b.c.b	ENSGT00950000183155.a.b.a.a.b.c.a	ENSGT00940000171101	ENSGT00530000064050.a ##22	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681
Lumpfish	MODERN SPECIES	2	mrpl24 (ENSCLMG00005001512)	ENSCLMG00005001479	MEF2D (ENSCLMG00005001429)	ENSCLMG00005001401	ENSCLMG00005001321	ENSCLMG00005001300	ENSCLMG00005001286	ENSCLMG00005017963	ENSCLMG00005017947	ENSCLMG00005017944	ndufv1 (ENSCLMG00005017594)	ENSCLMG00005017582	ENSCLMG00005017581	ENSCLMG00005017580	pip5k1aa (ENSCLMG00005017073)	psmd4a (ENSCLMG00005017016) ##22	znf687b (ENSCLMG00005017012) ##23	aqp10b (ENSCLMG00005017011) ##28	hax1 (ENSCLMG00005017010)	ubap2l (ENSCLMG00005016930)	C1orf43 (ENSCLMG00005016913) ##30	ENSCLMG00005016910 ##31	cgnb (ENSCLMG00005016890) ##32	pygo2 (ENSCLMG00005016880)	SHE (ENSCLMG00005016878) ##33	s100s (ENSCLMG00005016875)	s100u (ENSCLMG00005016874)	ENSCLMG00005016871 ##37	ENSCLMG00005016869	cks1b (ENSCLMG00005016868)	ENSCLMG00005016867
Perciformes_a	ANCESTRAL SPECIES	14	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00950000183155.a.b.a.a.b.c.b	ENSGT00940000171101	ENSGT00530000064050.a ##22	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681
Pike perch	MODERN SPECIES	13	rpz2 (ENSSLUG00000000119)	si:dkey-266f7.9 (ENSSLUG00000000112)	mrpl9 (ENSSLUG00000000108)	prcc (ENSSLUG00000013331)	ENSSLUG00000013326	mrpl24 (ENSSLUG00000013318)	ENSSLUG00000013308	mef2d (ENSSLUG00000013297)	ENSSLUG00000013287	ENSSLUG00000013279	ENSSLUG00000013272	ENSSLUG00000013265	ndufv1 (ENSSLUG00000013201)	ENSSLUG00000013187	pip5k1aa (ENSSLUG00000013153)	psmd4a (ENSSLUG00000013139) ##22	znf687b (ENSSLUG00000013128) ##23	aqp10b (ENSSLUG00000013113) ##28	hax1 (ENSSLUG00000013100)	ubap2l (ENSSLUG00000013008)	C1orf43 (ENSSLUG00000012987) ##30	ENSSLUG00000012984 ##31	cgnb (ENSSLUG00000012965) ##32	pygo2 (ENSSLUG00000012956)	SHE (ENSSLUG00000012951) ##33	s100s (ENSSLUG00000012947)	s100u (ENSSLUG00000012946)	ENSSLUG00000012942 ##37	ENSSLUG00000012935	cks1b (ENSSLUG00000012930)	ENSSLUG00000012927
Channel bull blenny	MODERN SPECIES	2	utp23 (ENSCGOG00000003302)	HDGF (ENSCGOG00000003300)	mrpl24 (ENSCGOG00000003296)	ENSCGOG00000003289	mef2d (ENSCGOG00000003272)	ENSCGOG00000003266	ENSCGOG00000003257	ENSCGOG00000003238	ENSCGOG00000002236	ENSCGOG00000002171	ENSCGOG00000002163	ndufv1 (ENSCGOG00000002055)	ENSCGOG00000002049	ENSCGOG00000002046	pip5k1aa (ENSCGOG00000001552)	psmd4a (ENSCGOG00000001348) ##22	znf687b (ENSCGOG00000001305) ##23	aqp10b (ENSCGOG00000001281) ##28	hax1 (ENSCGOG00000001268)	ubap2l (ENSCGOG00000014495)	C1orf43 (ENSCGOG00000014316) ##30	ENSCGOG00000014314 ##31	cgnb (ENSCGOG00000014304) ##32	pygo2 (ENSCGOG00000014302)	SHE (ENSCGOG00000014301) ##33	s100s (ENSCGOG00000014300)	s100u (ENSCGOG00000014298)	ENSCGOG00000014297 ##37	ENSCGOG00000014295	cks1b (ENSCGOG00000014272)	ENSCGOG00000014271
Eupecaria_C	ANCESTRAL SPECIES	13	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00950000183155.a.b.a.a.b.c.b	ENSGT00950000183155.a.b.b.h	ENSGT00940000171101	ENSGT00530000064050.a ##22	ENSGT00940000178054	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b
Gilthead seabream	MODERN SPECIES	17	HDGF (ENSSAUG00010013131)	mrpl24 (ENSSAUG00010013129)	ENSSAUG00010013128	mef2d (ENSSAUG00010013092)	ENSSAUG00010013085	ENSSAUG00010013083	RPS19 (ENSSAUG00010013077)	ENSSAUG00010013074	ENSSAUG00010013072	ENSSAUG00010013069	NDUFV1 (ENSSAUG00010012863)	ENSSAUG00010012858	ENSSAUG00010012856	pip5k1aa (ENSSAUG00010012843)	ENSSAUG00010012838	psmd4a (ENSSAUG00010012828) ##22	znf687b (ENSSAUG00010012836) ##23	aqp10b (ENSSAUG00010012827) ##28	hax1 (ENSSAUG00010012824)	ubap2l (ENSSAUG00010007498)	C1orf43 (ENSSAUG00010007442) ##30	ENSSAUG00010007436 ##31	cgnb (ENSSAUG00010007430) ##32	pygo2 (ENSSAUG00010007428)	SHE (ENSSAUG00010007427) ##33	s100s (ENSSAUG00010007425)	s100u (ENSSAUG00010007422)	ENSSAUG00010007421 ##37	cks1b (ENSSAUG00010007420)	ENSSAUG00010007418	ENSSAUG00010007415
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	10	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00940000171101	ENSGT00530000064050.a ##22	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681
European seabass	MODERN SPECIES	22	ENSDLAG00005034544	ENSDLAG00005028941	PRCC (ENSDLAG00005034816)	ENSDLAG00005032519	MRPL24 (ENSDLAG00005029464)	ENSDLAG00005012159	ENSDLAG00005012278	ENSDLAG00005031202	ENSDLAG00005029889	ENSDLAG00005012352	ENSDLAG00005012480	ENSDLAG00005013247	ENSDLAG00005013355	ENSDLAG00005013496	ENSDLAG00005013564	ENSDLAG00005013691 ##22	ENSDLAG00005013734 ##28	znf687b (ENSDLAG00005013710) ##23	ubap2l (ENSDLAG00005013766)	C1orf43 (ENSDLAG00005026690) ##30	ENSDLAG00005013985 ##31	cgnb (ENSDLAG00005014005) ##32	ENSDLAG00005014055 ##33	s100s (ENSDLAG00005014068)	s100u (ENSDLAG00005014073)	ENSDLAG00005029596	ENSDLAG00005035112	ENSDLAG00005014097	efna1a (ENSDLAG00005014125)	dpm3 (ENSDLAG00005031694)	trim46b (ENSDLAG00005014144)
Large yellow croaker	MODERN SPECIES	484	ppt1 (ENSLCRG00005000758)	rragcb (ENSLCRG00005000695)	fhl3b (ENSLCRG00005000684)	meaf6 (ENSLCRG00005000657)	stpg1 (ENSLCRG00005000640)	map7d1b (ENSLCRG00005020478)	thrap3b (ENSLCRG00005020473)	eva1bb (ENSLCRG00005020472)	LSM10 (ENSLCRG00005020471)	oscp1a (ENSLCRG00005020381)	ENSLCRG00005020362	zc3h12ab (ENSLCRG00005020357)	smim13 (ENSLCRG00005020351)	nedd9 (ENSLCRG00005020348)	pip5k1aa (ENSLCRG00005020307)	psmd4a (ENSLCRG00005020248) ##22	znf687b (ENSLCRG00005020231) ##23	aqp10b (ENSLCRG00005020225) ##28	hax1 (ENSLCRG00005020218)	ubap2l (ENSLCRG00005020158)	C1orf43 (ENSLCRG00005020121) ##30	ENSLCRG00005020116 ##31	cgnb (ENSLCRG00005020110) ##32	pygo2 (ENSLCRG00005020109)	SHE (ENSLCRG00005020108) ##33	s100s (ENSLCRG00005020106)	s100u (ENSLCRG00005020105)	ENSLCRG00005020103 ##37	ENSLCRG00005020094	cks1b (ENSLCRG00005020090)	ENSLCRG00005020085
Ovalentaria	ANCESTRAL SPECIES	12	ENSGT00940000157485	ENSGT00940000177924	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b ##19	ENSGT00940000154703.i ##20	ENSGT00530000064050.a ##22	ENSGT00940000178054	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b
Atherinomorphae	ANCESTRAL SPECIES	12	ENSGT00940000177924	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b ##19	ENSGT00940000171101	ENSGT00940000154703.i ##20	ENSGT00530000064050.a ##22	ENSGT00940000178054	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b
Cyprinodontiformes	ANCESTRAL SPECIES	10	ENSGT00940000157485	ENSGT00940000177924	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b ##19	ENSGT00940000154703.i ##20	ENSGT00530000064050.a ##22	ENSGT00940000178054	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b
Aplocheiloidei	ANCESTRAL SPECIES	9	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485.`b	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b ##19	ENSGT00940000154703.i ##20	ENSGT00530000064050.a ##22	ENSGT00940000178054	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b
Mangrove rivulus	MODERN SPECIES	2	mrpl9 (ENSKMAG00000010267)	prcc (ENSKMAG00000010290)	HDGF (ENSKMAG00000010315)	mrpl24 (ENSKMAG00000010337)	ENSKMAG00000010359	mef2d (ENSKMAG00000010472)	ENSKMAG00000010609	ENSKMAG00000010624	RPS19 (ENSKMAG00000010771)	ENSKMAG00000010795	ENSKMAG00000010805	ndufv1 (ENSKMAG00000010825)	ENSKMAG00000010850	ENSKMAG00000010861 ##19	PIP5K1A (ENSKMAG00000010870) ##20	psmd4a (ENSKMAG00000010902) ##22	ENSKMAG00000010953	znf687b (ENSKMAG00000010973) ##23	aqp10b (ENSKMAG00000011004) ##28	hax1 (ENSKMAG00000011038)	ubap2l (ENSKMAG00000011082)	ENSKMAG00000011172 ##31	C1orf43 (ENSKMAG00000011191) ##30	cgnb (ENSKMAG00000011220) ##32	pygo2 (ENSKMAG00000011253)	SHE (ENSKMAG00000011270) ##33	s100s (ENSKMAG00000011292)	s100u (ENSKMAG00000011309)	ENSKMAG00000011320 ##37	ENSKMAG00000011336	cks1b (ENSKMAG00000011353)
Turquoise killifish	MODERN SPECIES	1628	RPZ2 (ENSNFUG00015022292)	Nfu_g_1_004159 (ENSNFUG00015022293)	MRPL9 (ENSNFUG00015022295)	PRCC (ENSNFUG00015022302)	ENSNFUG00015022306	ENSNFUG00015022308	mrpl24 (ENSNFUG00015022310)	MEF2D (ENSNFUG00015022324)	tmem79a (ENSNFUG00015009635)	ENSNFUG00015009646	ENSNFUG00015009707	ENSNFUG00015009951	ndufv1 (ENSNFUG00015009972)	ENSNFUG00015010078	PIP5K1A (ENSNFUG00015010120) ##20	psmd4a (ENSNFUG00015010186) ##22	znf687b (ENSNFUG00015010236) ##23	aqp10b (ENSNFUG00015010295) ##28	HAX1 (ENSNFUG00015011057)	UBAP2L (ENSNFUG00015011109)	ENSNFUG00015011197	C1ORF43 (ENSNFUG00015011204) ##30	ENSNFUG00015011229 ##31	cgnb (ENSNFUG00015011242) ##32	PYGO2 (ENSNFUG00015011267)	SHE (ENSNFUG00015011276) ##33	s100s (ENSNFUG00015011287)	PBXIP1A (ENSNFUG00015011302)	S100A11 (ENSNFUG00015011315) ##37	RPLP1 (ENSNFUG00015011322)	clptm1l (ENSNFUG00015011453)
Cyprinodontoidei	ANCESTRAL SPECIES	11	ENSGT00940000157485	ENSGT00940000177924	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b ##19	ENSGT00940000154703.i ##20	ENSGT00530000064050.a ##22	ENSGT00940000178054	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b
NAME_4	ANCESTRAL SPECIES	10	ENSGT00940000177924	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000171595	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b ##19	ENSGT00940000154703.i ##20	ENSGT00530000064050.a ##22	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000177151	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b
Mummichog	MODERN SPECIES	2348	mrpl9 (ENSFHEG00000010344)	prcc (ENSFHEG00000010354)	HDGF (ENSFHEG00000010383)	mrpl24 (ENSFHEG00000010405)	ENSFHEG00000010495	mef2d (ENSFHEG00000010583)	tmem79a (ENSFHEG00000010593)	ENSFHEG00000010608	RPS19 (ENSFHEG00000010653)	ENSFHEG00000011209	ENSFHEG00000011229	ndufv1 (ENSFHEG00000011238)	ENSFHEG00000011248	ENSFHEG00000000255 ##19	PIP5K1A (ENSFHEG00000011322) ##20	psmd4a (ENSFHEG00000011374) ##22	znf687b (ENSFHEG00000011379) ##23	aqp10b (ENSFHEG00000011413) ##28	hax1 (ENSFHEG00000011477)	ubap2l (ENSFHEG00000011553)	C1orf43 (ENSFHEG00000011582) ##30	ENSFHEG00000011599 ##31	cgnb (ENSFHEG00000011611) ##32	pygo2 (ENSFHEG00000011620)	SHE (ENSFHEG00000011626) ##33	s100s (ENSFHEG00000011640)	s100u (ENSFHEG00000011668)	ENSFHEG00000011676	ENSFHEG00000011689	cks1b (ENSFHEG00000011707)	ENSFHEG00000000265
Sheepshead minnow	MODERN SPECIES	1161					mef2d (ENSCVAG00000018593)	ENSCVAG00000018606	ENSCVAG00000018621	RPS19 (ENSCVAG00000018637)	ENSCVAG00000018639	ENSCVAG00000018666	ENSCVAG00000018677	ndufv1 (ENSCVAG00000018710)	ENSCVAG00000018743	ENSCVAG00000018750 ##19	ENSCVAG00000018783	psmd4a (ENSCVAG00000018823) ##22	znf687b (ENSCVAG00000018862) ##23	aqp10b (ENSCVAG00000018883) ##28	hax1 (ENSCVAG00000018889)
Poeciliinae	ANCESTRAL SPECIES	18	ENSGT01010000222656	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00940000154703.i ##20	ENSGT00530000064050.a ##22	ENSGT00940000178054	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b
Poecilia	ANCESTRAL SPECIES	55														ENSGT00940000154743.A.a.b	ENSGT00940000154703.i ##20	ENSGT00530000064050.a ##22	ENSGT00940000178054	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b
NAME_6	ANCESTRAL SPECIES	363														ENSGT00940000154743.A.a.b	ENSGT00940000154703.i ##20	ENSGT00530000064050.a ##22	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a.a ##32	ENSGT00530000063948.a
Sailfin molly	MODERN SPECIES	1036													ENSPLAG00000000176	ENSPLAG00000008293	ENSPLAG00000000179	psmd4a (ENSPLAG00000008357) ##22	znf687b (ENSPLAG00000008375) ##23	aqp10b (ENSPLAG00000008698) ##28	hax1 (ENSPLAG00000008725)	ubap2l (ENSPLAG00000008857)	C1orf43 (ENSPLAG00000008919) ##30	ENSPLAG00000008932 ##31	cgnb (ENSPLAG00000009018) ##32	ENSPLAG00000009037
Amazon molly	MODERN SPECIES	944													ENSPFOG00000010491	ENSPFOG00000010458	PIP5K1A (ENSPFOG00000023949) ##20	psmd4a (ENSPFOG00000024342) ##22	znf687b (ENSPFOG00000010179) ##23	aqp10b (ENSPFOG00000010084) ##28	hax1 (ENSPFOG00000010026)	ubap2l (ENSPFOG00000009623)	C1orf43 (ENSPFOG00000009435) ##30	ENSPFOG00000009349 ##31
Guppy	MODERN SPECIES	441	mrpl48 (ENSPREG00000020427)	ENSPREG00000020407	ENSPREG00000020374	ENSPREG00000020316	ENSPREG00000020287	ENSPREG00000020232	ENSPREG00000020207	ENSPREG00000020196	ENSPREG00000020182	ENSPREG00000020166	ENSPREG00000020162	ENSPREG00000020150	ENSPREG00000020108	ENSPREG00000020094	PIP5K1A (ENSPREG00000020072) ##20	psmd4a (ENSPREG00000020043) ##22	ENSPREG00000020031	znf687b (ENSPREG00000020006) ##23	aqp10b (ENSPREG00000019991) ##28	hax1 (ENSPREG00000019934)	ENSPREG00000019910	ubap2l (ENSPREG00000019846)	C1orf43 (ENSPREG00000019815) ##30	ENSPREG00000019804 ##31	cgnb (ENSPREG00000019777) ##32	pygo2 (ENSPREG00000019764)	SHE (ENSPREG00000019724) ##33	s100s (ENSPREG00000019702)	ENSPREG00000019692	ENSPREG00000019668 ##37	ENSPREG00000019653
Platyfish	MODERN SPECIES	4	mrpl9 (ENSXMAG00000028983)	prcc (ENSXMAG00000015108)	HDGF (ENSXMAG00000025538)	mrpl24 (ENSXMAG00000015099)	ENSXMAG00000015085	mef2d (ENSXMAG00000015057)	ENSXMAG00000028213	ENSXMAG00000023896	ENSXMAG00000028381	RPS19 (ENSXMAG00000015051)	ENSXMAG00000015008	ENSXMAG00000027309	ndufv1 (ENSXMAG00000014972)	ENSXMAG00000014968	PIP5K1A (ENSXMAG00000015212) ##20	psmd4a (ENSXMAG00000015234) ##22	znf687b (ENSXMAG00000015254) ##23	aqp10b (ENSXMAG00000023474) ##28	hax1 (ENSXMAG00000014945)	ubap2l (ENSXMAG00000014867)	C1orf43 (ENSXMAG00000024844) ##30	ENSXMAG00000027024 ##31	cgnb (ENSXMAG00000014842) ##32	pygo2 (ENSXMAG00000024650)	SHE (ENSXMAG00000014826) ##33	s100s (ENSXMAG00000014824)	s100u (ENSXMAG00000014820)	ENSXMAG00000014814	ENSXMAG00000014816 ##37	cks1b (ENSXMAG00000023898)	ENSXMAG00000025812
Oryzias	ANCESTRAL SPECIES	24	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00940000163756.c.a	ENSGT00940000171595	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b ##19	ENSGT00940000171101	ENSGT00940000154703.i ##20	ENSGT00530000064050.a ##22	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681
Oryzias_b	ANCESTRAL SPECIES	31	ENSGT00390000010118.c.b	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00940000163756.c.a	ENSGT00940000171595	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b ##19	ENSGT00940000171101	ENSGT00940000154703.i ##20	ENSGT00530000064050.a ##22	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324.c	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000168838	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681
Indian medaka	DUPLICATION
Indian medaka	MODERN SPECIES	29	si:dkey-266f7.9 (ENSOMEG00000005469)	mrpl9 (ENSOMEG00000005486)	prcc (ENSOMEG00000005507)	HDGF (ENSOMEG00000005524)	mrpl24 (ENSOMEG00000005545)	ENSOMEG00000005605	mef2d (ENSOMEG00000005645)	ENSOMEG00000005658	ENSOMEG00000005719	ENSOMEG00000005732	ndufv1 (ENSOMEG00000005760)	ENSOMEG00000005770	ENSOMEG00000005775	ENSOMEG00000005784 ##19	ENSOMEG00000005827	PSMD4 (ENSOMEG00000005853) ##22	znf687b (ENSOMEG00000005886) ##23	aqp10b (ENSOMEG00000005898) ##28	hax1 (ENSOMEG00000005917)	ubap2l (ENSOMEG00000006074)	C1orf43 (ENSOMEG00000006115) ##30	ENSOMEG00000006189 ##31	cgnb (ENSOMEG00000006237) ##32	pygo2 (ENSOMEG00000006276)	s100s (ENSOMEG00000006300)	s100u (ENSOMEG00000006309)	ENSOMEG00000006318 ##37	ENSOMEG00000006328	cks1b (ENSOMEG00000006346)	ENSOMEG00000006357	efna1a (ENSOMEG00000006394)
Indian medaka	MODERN SPECIES	768														ENSOMEG00000008105	ENSOMEG00000008123 ##20	ENSOMEG00000008139 ##22
Javanese ricefish	MODERN SPECIES	2	ENSOJAG00000006227	cks1b (ENSOJAG00000006237)	ENSOJAG00000006257	ENSOJAG00000006340 ##37	s100u (ENSOJAG00000006347)	s100s (ENSOJAG00000006354)	ENSOJAG00000006375	C1orf43 (ENSOJAG00000006537) ##30	ubap2l (ENSOJAG00000006692)	hax1 (ENSOJAG00000007932)	aqp10b (ENSOJAG00000007966) ##28	ENSOJAG00000001647	ndufv1 (ENSOJAG00000001689)	ENSOJAG00000001838	ENSOJAG00000001849	psmd4a (ENSOJAG00000001863) ##22	znf687b (ENSOJAG00000001900) ##23	ENSOJAG00000001917	tmem79a (ENSOJAG00000001928)	ENSOJAG00000002025	PTK2 (ENSOJAG00000002123)	ENSOJAG00000002570	ENSOJAG00000002574	GPR20 (ENSOJAG00000002588)	cfap20 (ENSOJAG00000002594)	zgc:63863 (ENSOJAG00000002688)	SCRT1 (ENSOJAG00000002702)	ENSOJAG00000002710	dus3l (ENSOJAG00000002869)	MTERF1 (ENSOJAG00000002892)	ENSOJAG00000002903
Oryzias_a	ANCESTRAL SPECIES	64	ENSGT00390000010118.c.b	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00940000163756.c.a	ENSGT00940000171595	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b ##19	ENSGT00940000171101	ENSGT00530000064050.a ##22	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681
Japanese Medaka HdrR	MODERN SPECIES	2	mrpl9 (ENSORLG00000026444)	prcc (ENSORLG00000020217)	ENSORLG00000028666	mrpl24 (ENSORLG00000020211)	ENSORLG00000026486	MEF2D (ENSORLG00000027797)	ENSORLG00000027487	ENSORLG00000028118	ENSORLG00000026266	ENSORLG00000000281	ENSORLG00000000286	ndufv1 (ENSORLG00000000297)	ENSORLG00000026548	ENSORLG00000000301 ##19	ENSORLG00000030270	psmd4a (ENSORLG00000000320) ##22	znf687b (ENSORLG00000025604) ##23	aqp10b (ENSORLG00000000339) ##28	hax1 (ENSORLG00000028501)	ubap2l (ENSORLG00000000418)	C1orf43 (ENSORLG00000000442) ##30	ENSORLG00000000444 ##31	cgnb (ENSORLG00000000455) ##32	pygo2 (ENSORLG00000023708)	ENSORLG00000029460 ##33	s100s (ENSORLG00000022495)	s100u (ENSORLG00000025692)	ENSORLG00000025134 ##37	ENSORLG00000000477	cks1b (ENSORLG00000026617)	ENSORLG00000027127
Chinese medaka	MODERN SPECIES	944								ENSOSIG00000005076	ENSOSIG00000005073	ndufv1 (ENSOSIG00000002271)	ENSOSIG00000002192	pip5k1aa (ENSOSIG00000002118)	znf687b (ENSOSIG00000002084) ##23	aqp10b (ENSOSIG00000002062) ##28	hax1 (ENSOSIG00000001975)	psmd4a (ENSOSIG00000001050) ##22	ubap2l (ENSOSIG00000000957)	C1orf43 (ENSOSIG00000000936) ##30	ENSOSIG00000000926 ##31	pygo2 (ENSOSIG00000000921)	ENSOSIG00000000907	ENSOSIG00000000904 ##37	ENSOSIG00000000902	cks1b (ENSOSIG00000000901)	efna1a (ENSOSIG00000000895)	dpm3 (ENSOSIG00000000890)	trim46b (ENSOSIG00000000878)
Ovalentaria_B	ANCESTRAL SPECIES	15	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b ##19	ENSGT00940000154703.i ##20	ENSGT00530000064050.a ##22	ENSGT00940000178054	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b
Cichlidae	ANCESTRAL SPECIES	7	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b ##19	ENSGT00940000154703.i ##20	ENSGT00530000064050.a ##22	ENSGT00940000178054	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	12	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b ##19	ENSGT00940000154703.i ##20	ENSGT00530000064050.a ##22	ENSGT00940000178054	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	9	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b ##19	ENSGT00940000154703.i ##20	ENSGT00530000064050.a ##22	ENSGT00940000178054	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b
Haplochromini	ANCESTRAL SPECIES	5	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b ##19	ENSGT00940000154703.i ##20	ENSGT00530000064050.a ##22	ENSGT00940000178054	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b
Burton s mouthbrooder	MODERN SPECIES	357	si:dkey-266f7.9 (ENSHBUG00000021607)	ENSHBUG00000021576	mrpl9 (ENSHBUG00000021568)	prcc (ENSHBUG00000000809)	HDGF (ENSHBUG00000021552)	ENSHBUG00000021524	mef2d (ENSHBUG00000021492)	ENSHBUG00000021391	ENSHBUG00000021381	RPS19 (ENSHBUG00000021364)	ENSHBUG00000021336	ENSHBUG00000021231	ndufv1 (ENSHBUG00000021207)	ENSHBUG00000021174	PIP5K1A (ENSHBUG00000021166) ##20	psmd4a (ENSHBUG00000021151) ##22	ENSHBUG00000021090	znf687b (ENSHBUG00000021078) ##23	aqp10b (ENSHBUG00000021063) ##28	hax1 (ENSHBUG00000021052)	ubap2l (ENSHBUG00000021037)	C1orf43 (ENSHBUG00000001034) ##30	ENSHBUG00000020859 ##31	cgnb (ENSHBUG00000020841) ##32	pygo2 (ENSHBUG00000020816)	SHE (ENSHBUG00000020801) ##33	s100s (ENSHBUG00000020793)	s100u (ENSHBUG00000020788)	ENSHBUG00000020785 ##37	ENSHBUG00000020772	cks1b (ENSHBUG00000020757)
Haplochromini_A	ANCESTRAL SPECIES	5	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b ##19	ENSGT00940000154703.i ##20	ENSGT00530000064050.a ##22	ENSGT00940000178054	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b
P. nyererei	MODERN SPECIES	397	mrpl9 (ENSPNYG00000009390)	prcc (ENSPNYG00000009406)	ENSPNYG00000009424	mrpl24 (ENSPNYG00000009437)	ENSPNYG00000009488	mef2d (ENSPNYG00000009684)	ENSPNYG00000009733	ENSPNYG00000009742	RPS19 (ENSPNYG00000009770)	ENSPNYG00000009795	ENSPNYG00000009815	ndufv1 (ENSPNYG00000009841)	ENSPNYG00000009873	ENSPNYG00000009893 ##19	PIP5K1A (ENSPNYG00000009908) ##20	psmd4a (ENSPNYG00000009957) ##22	ENSPNYG00000009982	znf687b (ENSPNYG00000010000) ##23	aqp10b (ENSPNYG00000010082) ##28	hax1 (ENSPNYG00000010366)	ubap2l (ENSPNYG00000010412)	C1orf43 (ENSPNYG00000010519) ##30	ENSPNYG00000010562 ##31	cgnb (ENSPNYG00000010580) ##32	pygo2 (ENSPNYG00000010614)	SHE (ENSPNYG00000010625) ##33	s100s (ENSPNYG00000010649)	s100u (ENSPNYG00000010681)	ENSPNYG00000010695 ##37	ENSPNYG00000010753	cks1b (ENSPNYG00000010772)
Haplochromini_B	ANCESTRAL SPECIES	1	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00390000006215.b ##19	ENSGT00940000154703.i ##20	ENSGT00530000064050.a ##22	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681
Eastern happy	MODERN SPECIES	13	s100s (ENSACLG00000010756)	s100u (ENSACLG00000010572)	ENSACLG00000010564 ##37	ENSACLG00000010538	cks1b (ENSACLG00000010526)	mef2d (ENSACLG00000010423)	ENSACLG00000010415	ENSACLG00000010399	RPS19 (ENSACLG00000010375)	ENSACLG00000010332	ENSACLG00000010328	ndufv1 (ENSACLG00000010319)	ENSACLG00000010317	ENSACLG00000010314 ##19	PIP5K1A (ENSACLG00000010283) ##20	psmd4a (ENSACLG00000010267) ##22	znf687b (ENSACLG00000010230) ##23	aqp10b (ENSACLG00000010213) ##28	hax1 (ENSACLG00000010206)	ubap2l (ENSACLG00000010119)	C1orf43 (ENSACLG00000010093) ##30	ENSACLG00000010075 ##31	cgnb (ENSACLG00000010046) ##32	pygo2 (ENSACLG00000010034)	SHE (ENSACLG00000010028) ##33	ENSACLG00000009992	ENSACLG00000009983	efna1a (ENSACLG00000009980)	dpm3 (ENSACLG00000009972)	trim46b (ENSACLG00000009963)	s100a10a (ENSACLG00000009958)
Zebra mbuna	MODERN SPECIES	1104	mrpl9 (ENSMZEG00005026632)	prcc (ENSMZEG00005026630)	HDGF (ENSMZEG00005026627)	mrpl24 (ENSMZEG00005026624)	ENSMZEG00005026622	mef2d (ENSMZEG00005026614)	ENSMZEG00005026611	ENSMZEG00005026609	RPS19 (ENSMZEG00005026604)	ENSMZEG00005026602	ENSMZEG00005026600	ndufv1 (ENSMZEG00005026598)	ENSMZEG00005026597	ENSMZEG00005026595 ##19	pip5k1aa (ENSMZEG00005026593)	psmd4a (ENSMZEG00005026591) ##22	znf687b (ENSMZEG00005026588) ##23	aqp10b (ENSMZEG00005026582) ##28	hax1 (ENSMZEG00005026578)	ubap2l (ENSMZEG00005026572)	C1orf43 (ENSMZEG00005026569) ##30	ENSMZEG00005026566 ##31	cgnb (ENSMZEG00005026565) ##32	pygo2 (ENSMZEG00005026564)	SHE (ENSMZEG00005026562) ##33	ENSMZEG00005026561	s100s (ENSMZEG00005026559)	s100u (ENSMZEG00005026557)	ENSMZEG00005026555 ##37	ENSMZEG00005026551	cks1b (ENSMZEG00005026550)
Lyretail cichlid	MODERN SPECIES	302	si:dkey-266f7.9 (ENSNBRG00000015259)	mrpl9 (ENSNBRG00000015276)	prcc (ENSNBRG00000015303)	ENSNBRG00000015365	ENSNBRG00000015386	mef2d (ENSNBRG00000015507)	ENSNBRG00000015530	ENSNBRG00000015538	RPS19 (ENSNBRG00000015559)	ENSNBRG00000015569	ENSNBRG00000015581	ndufv1 (ENSNBRG00000015594)	ENSNBRG00000015606	ENSNBRG00000015628 ##19	PIP5K1A (ENSNBRG00000015643) ##20	psmd4a (ENSNBRG00000015701) ##22	ENSNBRG00000015739	znf687b (ENSNBRG00000015762) ##23	aqp10b (ENSNBRG00000015843) ##28	hax1 (ENSNBRG00000016015)	ubap2l (ENSNBRG00000016054)	C1orf43 (ENSNBRG00000016149) ##30	ENSNBRG00000016185 ##31	cgnb (ENSNBRG00000016236) ##32	pygo2 (ENSNBRG00000016278)	SHE (ENSNBRG00000016283) ##33	s100s (ENSNBRG00000016313)	s100u (ENSNBRG00000016377)	ENSNBRG00000016388 ##37	ENSNBRG00000016435	cks1b (ENSNBRG00000016502)
Nile tilapia	MODERN SPECIES	13	prcc (ENSONIG00000033561)	ENSONIG00000031957	ENSONIG00000028554	mrpl24 (ENSONIG00000019772)	ENSONIG00000019771	mef2d (ENSONIG00000019767)	ENSONIG00000019766	ENSONIG00000040681	RPS19 (ENSONIG00000019765)	ENSONIG00000042248	ENSONIG00000019760	ENSONIG00000019758	ndufv1 (ENSONIG00000019756)	ENSONIG00000019755	PIP5K1A (ENSONIG00000019753) ##20	psmd4a (ENSONIG00000019752) ##22	znf687b (ENSONIG00000019751) ##23	ENSONIG00000028636	aqp10b (ENSONIG00000019750) ##28	hax1 (ENSONIG00000019747)	ubap2l (ENSONIG00000019743)	C1orf43 (ENSONIG00000019739) ##30	ENSONIG00000019738 ##31	cgnb (ENSONIG00000019737) ##32	pygo2 (ENSONIG00000033754)	SHE (ENSONIG00000019733) ##33	s100s (ENSONIG00000027404)	s100u (ENSONIG00000019731)	ENSONIG00000032250 ##37	ENSONIG00000019730	cks1b (ENSONIG00000027098)
Midas cichlid	MODERN SPECIES	329	mrpl9 (ENSACIG00000002519)	prcc (ENSACIG00000002542)	HDGF (ENSACIG00000002607)	mrpl24 (ENSACIG00000002624)	BCAN (ENSACIG00000002645)	mef2d (ENSACIG00000002746)	tmem79a (ENSACIG00000002883)	ENSACIG00000002899	RPS19 (ENSACIG00000002928)	ENSACIG00000002943	ENSACIG00000003020	ndufv1 (ENSACIG00000003043)	ENSACIG00000003224	ENSACIG00000003294 ##19	pip5k1aa (ENSACIG00000003302)	psmd4a (ENSACIG00000003403) ##22	ENSACIG00000003431	znf687b (ENSACIG00000003449) ##23	aqp10b (ENSACIG00000003498) ##28	hax1 (ENSACIG00000003544)	ubap2l (ENSACIG00000003560)	C1orf43 (ENSACIG00000003732) ##30	ENSACIG00000003760 ##31	cgnb (ENSACIG00000003819) ##32	SHE (ENSACIG00000003908) ##33	s100s (ENSACIG00000003938)	ENSACIG00000003994	ENSACIG00000004006 ##37	ENSACIG00000004067	cks1b (ENSACIG00000004101)	ENSACIG00000004110
Pomacentridae	ANCESTRAL SPECIES	7	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00940000180237	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00950000183155.a.b.a.a.b.c.b	ENSGT00950000183155.a.b.a.a.b.c.a	ENSGT00390000006215.b ##19	ENSGT00940000154703.i ##20	ENSGT00530000064050.a ##22	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691.h	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681
Pomacentridae_A	ANCESTRAL SPECIES	37													ENSGT00950000183155.a.b.a.a.b.c.a	ENSGT00390000006215.b ##19	ENSGT00940000171101	ENSGT00530000064050.a ##22	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691.h	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681
Amphiprion	ANCESTRAL SPECIES	91	ENSGT00770000121795	ENSGT00940000180237	ENSGT00390000002390.b.f	ENSGT00940000159463.n.b	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00940000171101	ENSGT00530000064050.a ##22	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691.h	ENSGT00940000168219	ENSGT00940000154172.a ##37	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681
Orange clownfish	MODERN SPECIES	8	RPS19 (ENSAPEG00000007172)	ENSAPEG00000007224	ENSAPEG00000007273	mef2d (ENSAPEG00000007314)	ENSAPEG00000007412	mrpl24 (ENSAPEG00000007569)	HDGF (ENSAPEG00000007615)	prcc (ENSAPEG00000007636)	mrpl9 (ENSAPEG00000007650)	si:dkey-266f7.9 (ENSAPEG00000007676)	rpz2 (ENSAPEG00000007687)	krit1 (ENSAPEG00000007698)	cyp51 (ENSAPEG00000007764)	ENSAPEG00000007778	pip5k1aa (ENSAPEG00000007852)	psmd4a (ENSAPEG00000007908) ##22	znf687b (ENSAPEG00000007954) ##23	aqp10b (ENSAPEG00000008000) ##28	hax1 (ENSAPEG00000008010)	ubap2l (ENSAPEG00000008041)	C1orf43 (ENSAPEG00000008101) ##30	ENSAPEG00000008142 ##31	cgnb (ENSAPEG00000008164) ##32	pygo2 (ENSAPEG00000008185)	SHE (ENSAPEG00000008188) ##33	s100s (ENSAPEG00000008197)	s100u (ENSAPEG00000008267)	ENSAPEG00000008275 ##37	ENSAPEG00000008283	cks1b (ENSAPEG00000008300)	ENSAPEG00000008329
Clown anemonefish	MODERN SPECIES	3642				mef2d (ENSAOCG00000020638)	ENSAOCG00000001526	mrpl24 (ENSAOCG00000020676)	HDGF (ENSAOCG00000001527)	prcc (ENSAOCG00000001531)	mrpl9 (ENSAOCG00000020766)	si:dkey-266f7.9 (ENSAOCG00000020782)	rpz2 (ENSAOCG00000020787)	krit1 (ENSAOCG00000020867)	cyp51 (ENSAOCG00000020923)	ENSAOCG00000021593	pip5k1aa (ENSAOCG00000021727)	psmd4a (ENSAOCG00000021788) ##22	znf687b (ENSAOCG00000021824) ##23	ift74 (ENSAOCG00000021875)
Spiny chromis	MODERN SPECIES	2074											ndufv1 (ENSAPOG00000002783)	ENSAPOG00000002755	ENSAPOG00000002736	ENSAPOG00000002723 ##19	pip5k1aa (ENSAPOG00000002701)	psmd4a (ENSAPOG00000002664) ##22	znf687b (ENSAPOG00000000058) ##23
Bicolor damselfish	MODERN SPECIES	565							RPS19 (ENSSPAG00000020396)	ENSSPAG00000020489	ENSSPAG00000021518	ndufv1 (ENSSPAG00000021524)	ENSSPAG00000021562	ENSSPAG00000021599	ENSSPAG00000021609	ENSSPAG00000021632 ##19	PIP5K1A (ENSSPAG00000021643) ##20	psmd4a (ENSSPAG00000021684) ##22	znf687b (ENSSPAG00000021707) ##23	aqp10b (ENSSPAG00000021767) ##28	hax1 (ENSSPAG00000021865)	ubap2l (ENSSPAG00000021901)	C1orf43 (ENSSPAG00000022033) ##30	ENSSPAG00000022020 ##31	cgnb (ENSSPAG00000022053) ##32	pygo2 (ENSSPAG00000022069)	SHE (ENSSPAG00000022073) ##33	s100s (ENSSPAG00000022079)	s100u (ENSSPAG00000022082)	ENSSPAG00000022089 ##37	ENSSPAG00000022113	cks1b (ENSSPAG00000022127)	ENSSPAG00000022136
Tiger tail seahorse	MODERN SPECIES	141	prcc (ENSHCOG00000020865)	stk3 (ENSHCOG00000020927)	ARID1A (ENSHCOG00000020967)	tpbga (ENSHCOG00000020990)	TMEM222 (ENSHCOG00000020997)	paqr7a (ENSHCOG00000021002)	sh3bgrl3 (ENSHCOG00000021020)	ENSHCOG00000021048	ENSHCOG00000021056	ENSHCOG00000000569	ENSHCOG00000000071	ndufv1 (ENSHCOG00000002424)	ENSHCOG00000002449	ENSHCOG00000002460 ##19	PIP5K1A (ENSHCOG00000002475) ##20	psmd4a (ENSHCOG00000002488) ##22	znf687b (ENSHCOG00000002511) ##23	hax1 (ENSHCOG00000002524)	ubap2l (ENSHCOG00000002534)	C1orf43 (ENSHCOG00000002551) ##30	ENSHCOG00000002566 ##31	cgnb (ENSHCOG00000002577) ##32	pygo2 (ENSHCOG00000002584)	s100s (ENSHCOG00000002600)	s100u (ENSHCOG00000002603)	ENSHCOG00000002606	ENSHCOG00000002613	cks1b (ENSHCOG00000002616)	ENSHCOG00000002626	efna1a (ENSHCOG00000002631)	dpm3 (ENSHCOG00000002641)
Pinecone sodierfish	MODERN SPECIES	2	mrpl9 (ENSMMDG00005002209)	prcc (ENSMMDG00005002207)	HDGF (ENSMMDG00005002206)	mrpl24 (ENSMMDG00005002203)	mef2d (ENSMMDG00005002194)	tmem79a (ENSMMDG00005002190)	ENSMMDG00005002189	RPS19 (ENSMMDG00005002180)	ENSMMDG00005001978	ENSMMDG00005001960	ndufv1 (ENSMMDG00005001276)	ENSMMDG00005001202	ENSMMDG00005001193	ENSMMDG00005001179	PIP5K1A (ENSMMDG00005019571) ##20	psmd4a (ENSMMDG00005019535) ##22	znf687b (ENSMMDG00005019523) ##23	aqp10b (ENSMMDG00005019521) ##28	hax1 (ENSMMDG00005019515)	ubap2l (ENSMMDG00005019451)	C1orf43 (ENSMMDG00005019435) ##30	ENSMMDG00005019428 ##31	cgnb (ENSMMDG00005019414) ##32	pygo2 (ENSMMDG00005019404)	SHE (ENSMMDG00005019400) ##33	s100s (ENSMMDG00005019390)	ENSMMDG00005019376	ENSMMDG00005019374 ##37	ENSMMDG00005019369	cks1b (ENSMMDG00005019366)	ENSMMDG00005019363
Cod	MODERN SPECIES	14	TGFBR2 (ENSGMOG00000002583)	ENSGMOG00000002600	ENSGMOG00000002634	ENSGMOG00000002663	ENSGMOG00000034516	ENSGMOG00000002756	ENSGMOG00000029558	ENSGMOG00000002822	dnajc8 (ENSGMOG00000002855)	ENSGMOG00000002879	cers2a (ENSGMOG00000002912)	ENSGMOG00000031313	ENSGMOG00000035576	ENSGMOG00000032572	mrps21 (ENSGMOG00000027109)	ENSGMOG00000032053 ##22	znf687b (ENSGMOG00000027293) ##23	aqp10b (ENSGMOG00000010790) ##28	ENSGMOG00000033416 #28	hax1 (ENSGMOG00000010798)	ubap2l (ENSGMOG00000010809)	C1orf43 (ENSGMOG00000010839) ##30	ENSGMOG00000010849 ##31	cgnb (ENSGMOG00000010860) ##32	pygo2 (ENSGMOG00000035346)	ENSGMOG00000030274 ##33	s100s (ENSGMOG00000010913)	ENSGMOG00000036869	ENSGMOG00000030357 ##37	ENSGMOG00000024951	cks1b (ENSGMOG00000023116)
Protacanthopterygii	ANCESTRAL SPECIES	119	ENSGT00950000182894.D.f	ENSGT00940000155256.d.b.b	ENSGT00390000015518	ENSGT00940000158616	ENSGT00730000111056.h.e	ENSGT00940000165835.b	ENSGT00390000003308.a.b	ENSGT00950000182929.B.b.a	ENSGT00940000162287.D	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT00940000154703.i ##20	ENSGT00530000064050.a ##22	ENSGT00940000156524.a ##23	ENSGT00940000164368.A ##28	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a	ENSGT00940000159107.i ##33	ENSGT00940000166691	ENSGT00940000168219	ENSGT00940000154172.b.b #37	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000166681
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	164													ENSGT00390000010641.i.b.c	ENSGT00940000154743.A.a.b	ENSGT00940000154703.i ##20	ENSGT00530000064050.a.g ##22	ENSGT00940000156524.a.e ##23	ENSGT00940000165692.b.a.a #27	ENSGT00940000164368.B.j #28	ENSGT00390000018324	ENSGT00390000003453.b.b.c	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a.c	ENSGT00940000159107.i ##33	ENSGT00940000166691.e	ENSGT00940000168219.a	ENSGT00940000177151	ENSGT00730000111747.b.e	ENSGT00950000182971.B.b
Huchen	MODERN SPECIES	3248															PIP5K1A (ENSHHUG00000000309) ##20	PSMD4 (ENSHHUG00000000135) ##22	znf687b (ENSHHUG00000000049) ##23	ENSHHUG00000027316 #28	hax1 (ENSHHUG00000027308)	ubap2l (ENSHHUG00000027146)
Salmoninae_a	ANCESTRAL SPECIES	118													ENSGT00390000010641.i.b.c	ENSGT00940000154743.A.a.b	ENSGT00940000154703.i ##20	ENSGT00530000064050.a.g ##22	ENSGT00940000156524.a.e ##23	ENSGT00940000165692.b.a.a #27	ENSGT00940000164368.B.j #28	ENSGT00390000018324	ENSGT00390000003453.b.b.c	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a.c	ENSGT00940000159107.i ##33	ENSGT00940000166691.e	ENSGT00940000168219.a	ENSGT00940000177151	ENSGT00730000111747.b.e	ENSGT00950000182971.B.b
Salmo	ANCESTRAL SPECIES	40													ENSGT00390000010641.i.b.c	ENSGT00940000154743.A.a.b	ENSGT00940000154703.i ##20	ENSGT00530000064050.a.g ##22	ENSGT00940000156524.a.e ##23	ENSGT00940000164368.B.j #28	ENSGT00390000018324	ENSGT00390000003453.b.b.c	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a.c	ENSGT00940000159107.i ##33	ENSGT00940000166691.e	ENSGT00940000168219.a	ENSGT00940000177151	ENSGT00730000111747.b.e	ENSGT00950000182971.B.b	ENSGT01010000222336.a.a.a.a.a
Atlantic salmon	MODERN SPECIES	19													ENSSSAG00000058808	ENSSSAG00000063699	PIP5K1A (ENSSSAG00000053881) ##20	ENSSSAG00000092495 ##22	ZNF687 (ENSSSAG00000053990) ##23	ENSSSAG00000091322 #28	ubap2l (ENSSSAG00000054215)	ENSSSAG00000054342 ##31	C1orf43 (ENSSSAG00000109037) ##30	cgnb (ENSSSAG00000054367) ##32	pygo2 (ENSSSAG00000089131)	she (ENSSSAG00000054412) ##33	s100s (ENSSSAG00000111798)	ENSSSAG00000114845	ENSSSAG00000054433	ENSSSAG00000054423	ENSSSAG00000054441	ENSSSAG00000054447	ENSSSAG00000097250
River trout	MODERN SPECIES	27												ENSSTUG00000040670	ndufv1 (ENSSTUG00000040713)	ENSSTUG00000040878	PIP5K1A (ENSSTUG00000040903) ##20	PSMD4 (ENSSTUG00000041012) ##22	znf687b (ENSSTUG00000041176) ##23	ENSSTUG00000041257 #28	hax1 (ENSSTUG00000041331)	ubap2l (ENSSTUG00000041423)	ENSSTUG00000041600	C1orf43 (ENSSTUG00000041624) ##30	ENSSTUG00000041652 ##31	cgnb (ENSSTUG00000041719) ##32	pygo2 (ENSSTUG00000041829)	SHE (ENSSTUG00000041838) ##33	s100s (ENSSTUG00000041870)	s100u (ENSSTUG00000041887)	ENSSTUG00000041908	ENSSTUG00000041915	ENSSTUG00000041948
Oncorhynchus	ANCESTRAL SPECIES	16	ENSGT00940000167257.h.a	ENSGT00940000156815.f	ENSGT00940000159090.f	ENSGT00390000000292.B.o.b	ENSGT00940000157860.j	ENSGT00940000167257.h.b	ENSGT00940000174429	ENSGT01100000263563.c.a.b.e	ENSGT00940000155696.ub.f	ENSGT00940000161407.b.d	ENSGT00940000156564.b.c.a	ENSGT00940000155850.wb.b	ENSGT00390000010641.i.b.c	ENSGT00940000154743.A.a.b	ENSGT00940000154703.i ##20	ENSGT00530000064050.a.g ##22	ENSGT00940000156524.a.e ##23	ENSGT00390000018324	ENSGT00390000003453.b.b.c	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a.c	ENSGT00940000159107.i ##33	ENSGT00940000166691.e	ENSGT00940000168219.a	ENSGT00940000177151	ENSGT00730000111747.b.e	ENSGT00950000182971.B.b.w.a	ENSGT01010000222336.a.a.a.a.a	ENSGT00940000166681.i.a
Oncorhynchus_a	ANCESTRAL SPECIES	6	ENSGT00390000008902.jb.d	ENSGT00530000063252.a.b.a.a.f	ENSGT00940000167257.h.a	ENSGT00940000156815.f	ENSGT00940000159090.f	ENSGT00390000000292.B.o.b	ENSGT00940000157860.j	ENSGT01100000263563.c.a.b.e	ENSGT00940000155696.ub.f	ENSGT00940000161407.b.d	ENSGT00940000156564.b.c.a	ENSGT00940000155850.wb.b	ENSGT00390000010641.i.b.d	ENSGT00940000154743.A.a.b	ENSGT00940000154703.i ##20	ENSGT00530000064050.a.g ##22	ENSGT00940000156524.a.e ##23	ENSGT00390000018324	ENSGT00390000003453.b.b.c	ENSGT00510000047366.b ##30	ENSGT00950000183065.B.f ##31	ENSGT00940000154489.B.a ##32	ENSGT00530000063948.a.c	ENSGT00940000159107.i ##33	ENSGT00940000166691.e	ENSGT00940000168219.a	ENSGT00940000177151	ENSGT00730000111747.b.e	ENSGT00950000182971.B.b.w.a	ENSGT01010000222336.a.a.a.a.a	ENSGT00940000166681.i.a
Chinook salmon	MODERN SPECIES	5	cyyr1 (ENSOTSG00005046522)	ADAMTS1 (ENSOTSG00005046523)	ADAMTS5 (ENSOTSG00005046524)	ENSOTSG00005001941	ENSOTSG00005003379	p2rx3b (ENSOTSG00005006755)	ENSOTSG00005006757	cckbra (ENSOTSG00005006771)	NALF1 (ENSOTSG00005006772)	irs2a (ENSOTSG00005006784)	ENSOTSG00005006785	plekha3 (ENSOTSG00005006786)	ndufv1 (ENSOTSG00005006788)	ENSOTSG00005007568	PIP5K1A (ENSOTSG00005007570) ##20	PSMD4 (ENSOTSG00005007806) ##22	znf687b (ENSOTSG00005007817) ##23	hax1 (ENSOTSG00005007819)	ubap2l (ENSOTSG00005007829)	C1orf43 (ENSOTSG00005009841) ##30	ENSOTSG00005009844 ##31	cgnb (ENSOTSG00005009848) ##32	pygo2 (ENSOTSG00005009849)	SHE (ENSOTSG00005009852) ##33	s100s (ENSOTSG00005009853)	s100u (ENSOTSG00005009855)	ENSOTSG00005009857	ENSOTSG00005009858	cks1b (ENSOTSG00005009860)	ENSOTSG00005009862	ENSOTSG00005009864
Coho salmon	MODERN SPECIES	8	SLC6A6 (ENSOKIG00005031975)	GRIP2 (ENSOKIG00005031817)	ENSOKIG00005031795	DCAF1 (ENSOKIG00005031675)	DOCK3 (ENSOKIG00005030656)	ENSOKIG00005030603	ENSOKIG00005030522	DAG1 (ENSOKIG00005030503)	ENSOKIG00005030191	AMIGO3 (ENSOKIG00005030126)	ENSOKIG00005030111	USP11 (ENSOKIG00005023371)	ndufv1 (ENSOKIG00005022193)	ENSOKIG00005022155	PIP5K1A (ENSOKIG00005022071) ##20	PSMD4 (ENSOKIG00005022033) ##22	znf687b (ENSOKIG00005021996) ##23	hax1 (ENSOKIG00005021990)	ubap2l (ENSOKIG00005020967)	C1orf43 (ENSOKIG00005020903) ##30	ENSOKIG00005020846 ##31	cgnb (ENSOKIG00005020778) ##32	pygo2 (ENSOKIG00005020772)	SHE (ENSOKIG00005020766) ##33	s100s (ENSOKIG00005020760)	s100u (ENSOKIG00005020740)	ENSOKIG00005020734	ENSOKIG00005020723	cks1b (ENSOKIG00005020717)	ENSOKIG00005020715	ENSOKIG00005020712
Rainbow trout	MODERN SPECIES	9	ENSOMYG00000040751	cckbra (ENSOMYG00000040754)	ENSOMYG00000040759	ENSOMYG00000064169	ENSOMYG00000040764	irs2a (ENSOMYG00000040771)	ENSOMYG00000061719	ENSOMYG00000040793	ENSOMYG00000049358	ENSOMYG00000074434	ankrd10a (ENSOMYG00000058393)	ENSOMYG00000040843	ENSOMYG00000041326	ENSOMYG00000064890	PIP5K1A (ENSOMYG00000041341) ##20	ENSOMYG00000041349 ##22	znf687b (ENSOMYG00000041359) ##23	hax1 (ENSOMYG00000041371)	ubap2l (ENSOMYG00000041451)	C1orf43 (ENSOMYG00000041898) ##30	ENSOMYG00000041909 ##31	ENSOMYG00000041921	cgnb (ENSOMYG00000041930) ##32	pygo2 (ENSOMYG00000041940)	ENSOMYG00000041946 ##33	s100s (ENSOMYG00000005922)	s100u (ENSOMYG00000041954)	ENSOMYG00000041959	ENSOMYG00000041962	cks1b (ENSOMYG00000041968)	ENSOMYG00000063155
Salmoninae	ANCESTRAL SPECIES	955														ENSGT00950000183155.a.b.a.a.b.c.b	ENSGT00950000183155.a.b.a.a.b.c.a.a	ENSGT00530000064050.a.h ##22	ENSGT00940000156524.a.f ##23	ENSGT00940000164368.A ##28	ENSGT00390000003453.b.b.d
Salmoninae_a	ANCESTRAL SPECIES	139	ENSGT00390000007227.a.i	ENSGT00940000157244.a.a	ENSGT00940000160704.a.b	ENSGT00950000182894.D.f	ENSGT00940000155256.d.b.b.b	ENSGT00940000158616.k.b	ENSGT00730000111056.h.e	ENSGT00940000165835.b.f	ENSGT00950000182929.B.b.a	ENSGT00940000162367.f.hc	ENSGT00940000163756.c.a.b	ENSGT00940000166158.a.a.a	ENSGT00950000183155.a.b.a.b.c.b	ENSGT00950000183155.a.b.a.a.b.c.b	ENSGT00950000183155.a.b.a.a.b.c.a.a	ENSGT00530000064050.a.h ##22	ENSGT00940000156524.a.f ##23	ENSGT00940000164368.A ##28	ENSGT00390000003453.b.b.d	ENSGT00530000063948.a.d	ENSGT00940000166691.f	ENSGT00940000168219.b	ENSGT00940000154172.b.b #37	ENSGT00730000111747.b.f
Oncorhynchus	ANCESTRAL SPECIES	40	ENSGT00940000157244.a.a	ENSGT00940000160704.a.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D.f	ENSGT00940000155256.d.b.b.b	ENSGT00940000158616.k.b	ENSGT00730000111056.h.e	ENSGT00940000165835.b.f	ENSGT00950000182929.B.b.a	ENSGT00940000162367.f.hc	ENSGT00940000163756.c.a.b	ENSGT00940000166158.a.a.a	ENSGT00950000183155.a.b.a.a.b.c.b	ENSGT00950000183155.a.b.a.a.b.c.a.a	ENSGT00530000064050.a.h ##22	ENSGT00940000156524.a.f ##23	ENSGT00940000164368.A ##28	ENSGT00390000003453.b.b.d	ENSGT00530000063948.a.d	ENSGT00940000166691.f	ENSGT00940000168219.b	ENSGT00940000154172.b.b #37	ENSGT00730000111747.b.f	ENSGT00950000182971.B.b.v	ENSGT00940000166681.i.b	ENSGT00940000159919.b.d	ENSGT00390000008892	ENSGT00940000158021.c.b	ENSGT00970000197205.A	ENSGT00970000197205.E
Oncorhynchus_a	ANCESTRAL SPECIES	96	ENSGT00940000157244.a.a	ENSGT00940000160704.a.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D.f	ENSGT00940000155256.d.b.b.b	ENSGT00940000158616.k.b	ENSGT00730000111056.h.e	ENSGT00940000165835.b.f	ENSGT00950000182929.B.b.a	ENSGT00940000162287.D	ENSGT00940000163756.c.a.b	ENSGT00940000166158.a.a.a	ENSGT00950000183155.a.b.a.a.b.c.b	ENSGT00950000183155.a.b.a.a.b.c.a.a	ENSGT00530000064050.a.h ##22	ENSGT00940000156524.a.f ##23	ENSGT00940000164368.A ##28	ENSGT00390000003453.b.b.d	ENSGT00530000063948.a.d	ENSGT00940000166691.f	ENSGT00940000168219.b	ENSGT00940000154172.b.b #37	ENSGT00730000111747.b.f	ENSGT00950000182971.B.b.v	ENSGT00950000182971.B.b.w.b	ENSGT00940000166681.j	ENSGT00940000166681.i.b	ENSGT00940000159919.b.d	ENSGT00390000008892	ENSGT00940000158021.c.b
Chinook salmon	MODERN SPECIES	24	ENSOTSG00005010681	naxe (ENSOTSG00005010675)	LMNA (ENSOTSG00005010591)	usf2 (ENSOTSG00005010551)	tekt2 (ENSOTSG00005010547)	ago3b (ENSOTSG00005004739)	SLC9A3 (ENSOTSG00005004232)	ENSOTSG00005004222	lipea (ENSOTSG00005004221)	ENSOTSG00005004011	ENSOTSG00005004003	ENSOTSG00005003999	ENSOTSG00005003986	ENSOTSG00005003982	ENSOTSG00005003979	PSMD4 (ENSOTSG00005003223) ##22	znf687b (ENSOTSG00005003207) ##23	aqp10b (ENSOTSG00005003203) ##28	ubap2l (ENSOTSG00005002969)	pygo2 (ENSOTSG00005002949)	s100s (ENSOTSG00005002945)	ENSOTSG00005002721 #37	s100u (ENSOTSG00005046568)	ENSOTSG00005046569	cks1b (ENSOTSG00005046567)	ENSOTSG00005046566	efna1a (ENSOTSG00005046565)	dpm3 (ENSOTSG00005046563)	trim46b (ENSOTSG00005046559)	ENSOTSG00005046556	ENSOTSG00005046555
Coho salmon	MODERN SPECIES	5	LMNA (ENSOKIG00005033932)	usf2 (ENSOKIG00005033816)	tekt2 (ENSOKIG00005033761)	ago3b (ENSOKIG00005029298)	SLC9A3 (ENSOKIG00005028753)	lipea (ENSOKIG00005028637)	ENSOKIG00005028344	ENSOKIG00005028326	ENSOKIG00005028318	ENSOKIG00005028241	ENSOKIG00005028203	ENSOKIG00005028198	ENSOKIG00005028182	ENSOKIG00005028173	ENSOKIG00005028158	PSMD4 (ENSOKIG00005027823) ##22	znf687b (ENSOKIG00005027729) ##23	aqp10b (ENSOKIG00005027713) ##28	ubap2l (ENSOKIG00005027591)	pygo2 (ENSOKIG00005027555)	s100s (ENSOKIG00005027487)	ENSOKIG00005027478	s100u (ENSOKIG00005027465)	ENSOKIG00005027427 #37	ENSOKIG00005027447	CKS1B (ENSOKIG00005027388)	ENSOKIG00005027355	ENSOKIG00005027348	efna1a (ENSOKIG00005027330)	dpm3 (ENSOKIG00005027324)	trim46b (ENSOKIG00005027102)
Rainbow trout	MODERN SPECIES	24	ENSOMYG00000065144	ENSOMYG00000006317	nhe3b (ENSOMYG00000003588)	lipea (ENSOMYG00000003639)	ENSOMYG00000008583	ENSOMYG00000028201	ENSOMYG00000059834	ENSOMYG00000076026	ENSOMYG00000052553	ENSOMYG00000063431	ENSOMYG00000048099	ENSOMYG00000049567	ENSOMYG00000056714	ENSOMYG00000041332	ENSOMYG00000050498	ENSOMYG00000009256 ##22	znf687b (ENSOMYG00000077357) ##23	ENSOMYG00000070635	aqp10b (ENSOMYG00000007281) ##28	ubap2l (ENSOMYG00000006069)	ENSOMYG00000049469	pygo2 (ENSOMYG00000005983)	ENSOMYG00000054452	s100s (ENSOMYG00000063581)	s100u (ENSOMYG00000023035)	ENSOMYG00000005896 #37	ENSOMYG00000008450	ENSOMYG00000005653	ENSOMYG00000041980	efna1a (ENSOMYG00000038281)	dpm3 (ENSOMYG00000070307)
Salmo	ANCESTRAL SPECIES	125	ENSGT00390000018560.a.a.a.a.b.j.b	ENSGT00940000160991.b.c.a	ENSGT00390000007227.a.i	ENSGT00940000157244.a.a	ENSGT00940000160704.a.b	ENSGT00950000182894.D.f	ENSGT00940000155256.d.b.b.b	ENSGT00940000158616.k.b	ENSGT00730000111056.h.e	ENSGT00940000165835.b.f	ENSGT00950000182929.B.b.a	ENSGT00940000162367.f.hc	ENSGT00940000163756.c.a.b	ENSGT00940000166158.a.a.a	ENSGT00950000183155.a.b.a.a.b.c.a.a	ENSGT00530000064050.a.h ##22	ENSGT00940000156524.a.f ##23	ENSGT00940000164368.A ##28	ENSGT00390000003453.b.b.d	ENSGT00530000063948.a.d	ENSGT00940000166691.f	ENSGT00940000171931.c	ENSGT00730000111747.b.f	ENSGT00940000168219.b	ENSGT00940000154172.b.b #37
River trout	MODERN SPECIES	29	scn1bb (ENSSTUG00000038164)	ENSSTUG00000038147	naxe (ENSSTUG00000038132)	LMNA (ENSSTUG00000038075)	usf2 (ENSSTUG00000037986)	tekt2 (ENSSTUG00000037868)	ago3b (ENSSTUG00000036333)	SLC9A3 (ENSSTUG00000035842)	lipea (ENSSTUG00000035734)	ENSSTUG00000035131	ENSSTUG00000035107	ENSSTUG00000035099	ENSSTUG00000035080	ENSSTUG00000034993	ENSSTUG00000034979	PSMD4 (ENSSTUG00000034773) ##22	znf687b (ENSSTUG00000034715) ##23	aqp10b (ENSSTUG00000034698) ##28	ubap2l (ENSSTUG00000034545)	pygo2 (ENSSTUG00000034516)	ENSSTUG00000034493	s100s (ENSSTUG00000034483)	s100u (ENSSTUG00000034468)	ENSSTUG00000038675	ENSSTUG00000038660 #37	ENSSTUG00000038670	cks1b (ENSSTUG00000038646)	ENSSTUG00000038626	ENSSTUG00000038618	efna1a (ENSSTUG00000038605)	dpm3 (ENSSTUG00000038600)
Atlantic salmon	MODERN SPECIES	5	ENSSSAG00000040032	ENSSSAG00000039714	ENSSSAG00000039231	ENSSSAG00000118424	ENSSSAG00000055927	ENSSSAG00000119620	ENSSSAG00000110468	ENSSSAG00000078337	ENSSSAG00000078450	ENSSSAG00000086742	ENSSSAG00000114553	ENSSSAG00000078462	ENSSSAG00000084776	ENSSSAG00000088435	ENSSSAG00000078474	ENSSSAG00000004354 ##22	ENSSSAG00000093080	znf687b (ENSSSAG00000004448) ##23	aqp10b (ENSSSAG00000004589) ##28	ubap2l (ENSSSAG00000005540)	pygo2 (ENSSSAG00000005737)	s100s (ENSSSAG00000005742)	ENSSSAG00000005764	ENSSSAG00000087363	ENSSSAG00000107565	efna1a (ENSSSAG00000005794)	dpm3 (ENSSSAG00000005805)	trim46b (ENSSSAG00000005827)	ENSSSAG00000005889	ENSSSAG00000005895	ENSSSAG00000005912
Huchen	MODERN SPECIES	72				dpm3 (ENSHHUG00000035535)	efna1a (ENSHHUG00000035541)	ENSHHUG00000035545	cks1b (ENSHHUG00000035565)	ENSHHUG00000035572	s100u (ENSHHUG00000035567)	ENSHHUG00000035580 #37	s100s (ENSHHUG00000035583)	pygo2 (ENSHHUG00000035595)	ENSHHUG00000035601 ##32	ENSHHUG00000035616 ##32	ubap2l (ENSHHUG00000035629)	PSMD4 (ENSHHUG00000035707) ##22	znf687b (ENSHHUG00000035721) ##23	ENSHHUG00000035726 ##28	ENSHHUG00000035729 ##19	ENSHHUG00000035738	ENSHHUG00000035740	ENSHHUG00000035747	ndufv1 (ENSHHUG00000035750)	ENSHHUG00000035756	ENSHHUG00000035761	lrp12 (ENSHHUG00000035791)	ZFPM2 (ENSHHUG00000035802)	ENSHHUG00000035817	nudcd1 (ENSHHUG00000035833)
Northern pike	MODERN SPECIES	9	slc9a3.1 (ENSELUG00000022644)	lipea (ENSELUG00000022575)	ENSELUG00000022538	tomm40l (ENSELUG00000022469)	apoea (ENSELUG00000000957)	ENSELUG00000022396	ENSELUG00000034291	ENSELUG00000028551	ENSELUG00000009258	ndufv1 (ENSELUG00000009231)	ENSELUG00000009162	ENSELUG00000031994	ENSELUG00000028553	ENSELUG00000028339	PIP5K1A (ENSELUG00000009097) ##20	ENSELUG00000009051 ##22	znf687b (ENSELUG00000008981) ##23	aqp10b (ENSELUG00000008962) ##28	hax1 (ENSELUG00000000338)	ubap2l (ENSELUG00000008908)	C1orf43 (ENSELUG00000008771) ##30	ENSELUG00000008723 ##31	cgnb (ENSELUG00000008683) ##32	pygo2 (ENSELUG00000008606)	ENSELUG00000008572 ##33	s100s (ENSELUG00000030277)	s100u (ENSELUG00000008487)	s100a11 (ENSELUG00000008472) #37	ENSELUG00000008428	cks1b (ENSELUG00000008403)	ENSELUG00000001706
Osteoglossiformes	ANCESTRAL SPECIES	409											ENSGT00940000156904.a.a	ENSGT00560000077232.A.a.g	ENSGT00940000165364.a.a.r	ENSGT00940000165134.d	ENSGT00940000154703.l #20	ENSGT00530000064050.a ##22	ENSGT00960000189065	ENSGT00940000156524.a.b ##23	ENSGT00390000018324	ENSGT00390000003453.b.b.f
Asian bonytongue	MODERN SPECIES	22	b4gat1 (ENSSFOG00015023787)	znf16l (ENSSFOG00015023789)	nit1 (ENSSFOG00015023792)	ENSSFOG00015023793	rbm14b (ENSSFOG00015025672)	rcvrn2 (ENSSFOG00015023804)	slc2a3a (ENSSFOG00015023809)	gnb3b (ENSSFOG00015023815)	znf384a (ENSSFOG00015023839)	FLOT1 (ENSSFOG00015029543)	ENSSFOG00015030175	ENSSFOG00015023851	ENSSFOG00015023856	ENSSFOG00015023858	ENSSFOG00015023859	psmd4a (ENSSFOG00015023864) ##22	hax1 (ENSSFOG00015023868)	ENSSFOG00015023874	fbxl22 (ENSSFOG00015023875)	commd4 (ENSSFOG00015028249)	MAN2C1 (ENSSFOG00015023878)	cyp11a1.1 (ENSSFOG00015023887)	hexa (ENSSFOG00015023889)	ppcdc (ENSSFOG00015023892)	RPS27 (ENSSFOG00015028128)	DNAJA4 (ENSSFOG00015029615)	ENSSFOG00015030887	zwilch (ENSSFOG00015023897)	GCNT3 (ENSSFOG00015005883)	GCNT3 (ENSSFOG00015015824)	bnip2 (ENSSFOG00015015802)
P. kingsleyae	MODERN SPECIES	72	gnb3b (ENSPKIG00000012108)	znf384a (ENSPKIG00000012153)	FLOT1 (ENSPKIG00000012343)	ENSPKIG00000012424	ENSPKIG00000012460	ENSPKIG00000012493	erf (ENSPKIG00000012566)	ENSPKIG00000012582	GRIK5 (ENSPKIG00000012638)	ENSPKIG00000012719	ENSPKIG00000012770	ENSPKIG00000012788	ENSPKIG00000012805	ENSPKIG00000012820	pip5k1ab (ENSPKIG00000012861) #20	psmd4a (ENSPKIG00000012954) ##22	ENSPKIG00000013018	znf687b (ENSPKIG00000013049) ##23	ENSPKIG00000013094 #24	hax1 (ENSPKIG00000013156)	UBAP2L (ENSPKIG00000013269)	zgc:152968 (ENSPKIG00000013454)	GBGT1 (ENSPKIG00000013554)	rab42a (ENSPKIG00000013594)	ENSPKIG00000013620	ENSPKIG00000013634	ENSPKIG00000013681	serinc2 (ENSPKIG00000013714)	ENSPKIG00000013750	ENSPKIG00000013795	ENSPKIG00000013826
Reedfish	MODERN SPECIES	10	XXYLT1 (ENSECRG00000006429)	ARMC9 (ENSECRG00000006449)	b3gnt7 (ENSECRG00000006468)	ncl (ENSECRG00000006478)	nppc (ENSECRG00000006504)	ENSECRG00000006511	ENSECRG00000006518	alpi.1 (ENSECRG00000006527)	alpi.2 (ENSECRG00000006541)	ppp1r2 (ENSECRG00000006547)	ENSECRG00000006554 #17	ENSECRG00000006559	ENSECRG00000006568	ENSECRG00000006582 #19	pip5k1ab (ENSECRG00000006595) #20	psmd4a (ENSECRG00000006611) #22	znf687b (ENSECRG00000006623) #23	ENSECRG00000006630	msto1 (ENSECRG00000006645)	TMEM79 (ENSECRG00000006655)	glmp (ENSECRG00000000487)	cct3 (ENSECRG00000000501)	pdia7 (ENSECRG00000000530)	ssr2 (ENSECRG00000000575)	ENSECRG00000000609	ENSECRG00000000639	arhgef1a (ENSECRG00000000678)	GBA1 (ENSECRG00000000716)	ENSECRG00000000739	scamp3 (ENSECRG00000000775)	crabp2b (ENSECRG00000000813)
Sarcopterygii	ANCESTRAL SPECIES	151	ENSGT00940000164105	ENSGT00390000016256	ENSGT00940000159088	ENSGT00940000160132	ENSGT00940000158021	ENSGT00390000003552	ENSGT00390000008892	ENSGT00390000007801	ENSGT00940000159919	ENSGT00940000162071	ENSGT00390000007266	ENSGT00950000182971.B.b	ENSGT00950000182870.a.a.b	ENSGT00940000154703 #20	ENSGT00990000206813	ENSGT00530000064050 #22	ENSGT00960000189065	ENSGT00940000156524 #23	ENSGT00940000165572	ENSGT00550000074892	ENSGT00940000175972	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649
Tetrapoda	ANCESTRAL SPECIES	143														ENSGT00940000154703 #20	ENSGT00990000206813	ENSGT00530000064050 #22	ENSGT00960000189065	ENSGT00940000156524 #23	ENSGT00940000165572	ENSGT00550000074892	ENSGT00940000175972	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281
Anura	ANCESTRAL SPECIES	55															ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00940000165572	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000159364	ENSGT00940000157062
Frog	MODERN SPECIES	8	psmb4 (ENSXETG00000036566)	selenbp1 (ENSXETG00000020722)	ENSXETG00000044917	rfx5 (ENSXETG00000043054)	ENSXETG00000045786	pi4kb (ENSXETG00000041656)	myo1e.2 (ENSXETG00000010007)	ENSXETG00000048115	znf687 (ENSXETG00000010001) #23	ENSXETG00000045267	med22 (ENSXETG00000015404)	CKS1B (ENSXETG00000048409)	ENSXETG00000042025	ENSXETG00000044406	pbxip1 (ENSXETG00000036148)	psmd4 (ENSXETG00000042857) #22	ENSXETG00000048790	zbtb7b (ENSXETG00000046569)	adam15 (ENSXETG00000045265)	efna4 (ENSXETG00000039321)	efna1 (ENSXETG00000019428)	slc50a1 (ENSXETG00000036610)	dpm3 (ENSXETG00000046606)	krtcap2 (ENSXETG00000045393)	TRIM46 (ENSXETG00000042062)	ENSXETG00000046475	thbs3 (ENSXETG00000006338)	GBA1 (ENSXETG00000045974)	ENSXETG00000043601	ENSXETG00000043610	ENSXETG00000043875
Leishan spiny toad	MODERN SPECIES	4	ENSLLEG00000030860	ENSLLEG00000030855	ENSLLEG00000030849	ENSLLEG00000030844	ENSLLEG00000030841	ENSLLEG00000030812	ENSLLEG00000030788	USF1 (ENSLLEG00000030765)	ENSLLEG00000030749	ENSLLEG00000030292	ENSLLEG00000030141	ENSLLEG00000030134	ENSLLEG00000030115	PMVK (ENSLLEG00000030097)	PIP5K1A (ENSLLEG00000030078) #20	PSMD4 (ENSLLEG00000030034) #22	ZNF687 (ENSLLEG00000030001) #23	ENSLLEG00000029829	RFX5 (ENSLLEG00000029608)	ENSLLEG00000029198	ENSLLEG00000029091	PSMB4 (ENSLLEG00000029054)	POGZ (ENSLLEG00000029012)	CGN (ENSLLEG00000028910) #32	TUFT1 (ENSLLEG00000028869) #31	ENSLLEG00000028853	SNX27 (ENSLLEG00000028804)	CELF3 (ENSLLEG00000028625)	ENSLLEG00000028580	ENSLLEG00000028569	ENSLLEG00000028555
Amniota	ANCESTRAL SPECIES	28	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000154412.B.a	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00990000206813	ENSGT00530000064050 #22	ENSGT00960000189065	ENSGT00940000156524 #23	ENSGT00940000165572	ENSGT00550000074892	ENSGT00940000175972	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281
Mammalia	ANCESTRAL SPECIES	25	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000161521
Theria	ANCESTRAL SPECIES	3	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364
Marsupialia	ANCESTRAL SPECIES	2	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
Marsupialia_b	ANCESTRAL SPECIES	1	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
Diprotodontia	ANCESTRAL SPECIES	5	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
Diprotodontia_a	ANCESTRAL SPECIES	6	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281.g	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1007	ENSVURG00010014785	ENSVURG00010014761	ENSVURG00010014734	ENSVURG00010014689	ENSVURG00010014712	ENSVURG00010014667	MLLT11 (ENSVURG00010014655)	ENSVURG00010014626	ENSVURG00010014579	ENSVURG00010014564	ENSVURG00010014557	ENSVURG00010014549	ENSVURG00010014536	ENSVURG00010014525	ENSVURG00010014485 #20	ENSVURG00010014467 #22	ENSVURG00010014438 #23	ENSVURG00010014391	ENSVURG00010014375	ENSVURG00010014333	ENSVURG00010014312	ENSVURG00010014303	ENSVURG00010014273	ENSVURG00010014229	ENSVURG00010014178 #31	ENSVURG00010014141	ENSVURG00010014109	ENSVURG00010014095 #25	ENSVURG00010014084	ENSVURG00010014057	ENSVURG00010014037
Common wonbat	MODERN SPECIES	1007	ENSVURG00010000206	ENSVURG00010000188	ENSVURG00010000167	ENSVURG00010000146	ENSVURG00010000128	ENSVURG00010000117	ENSVURG00010000108	ENSVURG00010018897	ENSVURG00010018895	ENSVURG00010018879	ENSVURG00010018892	ENSVURG00010018868	ENSVURG00010018858	ENSVURG00010018853	ENSVURG00010018840 #20	ENSVURG00010018831 #22	ENSVURG00010018821 #23	ENSVURG00010018796	ENSVURG00010018784	ENSVURG00010018772	ENSVURG00010018755	ENSVURG00010018746	ENSVURG00010018723	ENSVURG00010018703	ENSVURG00010018681 #31	ENSVURG00010017588	ENSVURG00010017456	ENSVURG00010017437 #25	ENSVURG00010017427	ENSVURG00010017418	ENSVURG00010017411
koala	MODERN SPECIES	4	ANXA9 (ENSPCIG00000008929)	MINDY1 (ENSPCIG00000008930)	PRUNE1 (ENSPCIG00000007751)	BNIPL (ENSPCIG00000007757)	ENSPCIG00000033805	ENSPCIG00000037396	ENSPCIG00000031827	GABPB2 (ENSPCIG00000021073)	SEMA6C (ENSPCIG00000021074)	TNFAIP8L2 (ENSPCIG00000021076)	LYSMD1 (ENSPCIG00000021077)	SCNM1 (ENSPCIG00000021078)	TMOD4 (ENSPCIG00000021079)	VPS72 (ENSPCIG00000021130)	PIP5K1A (ENSPCIG00000021133) #20	PSMD4 (ENSPCIG00000021137) #22	ZNF687 (ENSPCIG00000021138) #23	PI4KB (ENSPCIG00000021143)	RFX5 (ENSPCIG00000021149)	SELENBP1 (ENSPCIG00000021151)	PSMB4 (ENSPCIG00000021158)	POGZ (ENSPCIG00000021163)	ENSPCIG00000021171	TUFT1 (ENSPCIG00000021175) #31	SNX27 (ENSPCIG00000021183)	CELF3 (ENSPCIG00000021190)	ENSPCIG00000037088 #25	ENSPCIG00000021194	OAZ3 (ENSPCIG00000021199)	TDRKH (ENSPCIG00000021201)	LINGO4 (ENSPCIG00000021207)
Wallaby	MODERN SPECIES	6748										TNFAIP8L2 (ENSMEUG00000001223)	LYSMD1 (ENSMEUG00000001228)	SCNM1 (ENSMEUG00000001235)	TMOD4 (ENSMEUG00000001244)	VPS72 (ENSMEUG00000001252)	PIP5K1A (ENSMEUG00000001263) #20	PSMD4 (ENSMEUG00000001289) #22
Tasmanian devil	MODERN SPECIES	3	CERS2 (ENSSHAG00000012811)	MINDY1 (ENSSHAG00000013033)	ANXA9 (ENSSHAG00000012884)	ENSSHAG00000028099	ENSSHAG00000029597	ENSSHAG00000026643	GABPB2 (ENSSHAG00000030596)	MLLT11 (ENSSHAG00000025455)	ENSSHAG00000025507	SEMA6C (ENSSHAG00000013618)	ENSSHAG00000022218	SCNM1 (ENSSHAG00000013796)	TMOD4 (ENSSHAG00000013797)	VPS72 (ENSSHAG00000013847)	PIP5K1A (ENSSHAG00000013894) #20	PSMD4 (ENSSHAG00000029197) #22	ZNF687 (ENSSHAG00000014191) #23	PI4KB (ENSSHAG00000014219)	RFX5 (ENSSHAG00000031331)	SELENBP1 (ENSSHAG00000014447)	PSMB4 (ENSSHAG00000014719)	POGZ (ENSSHAG00000014743)	ENSSHAG00000015207	TUFT1 (ENSSHAG00000025042) #31	SNX27 (ENSSHAG00000015572)	CELF3 (ENSSHAG00000015744)	ENSSHAG00000024960 #25	MRPL9 (ENSSHAG00000026598)	OAZ3 (ENSSHAG00000015841)	LINGO4 (ENSSHAG00000022437)	TDRKH (ENSSHAG00000015859)
Opossum	DUPLICATION
Opossum	MODERN SPECIES	1	MINDY1 (ENSMODG00000018827)	PRUNE1 (ENSMODG00000045279)	BNIPL (ENSMODG00000046354)	ENSMODG00000018832	CDC42SE1 (ENSMODG00000018833)	MLLT11 (ENSMODG00000023207)	GABPB2 (ENSMODG00000018836)	SEMA6C (ENSMODG00000018839)	ENSMODG00000048842	TNFAIP8L2 (ENSMODG00000023206)	LYSMD1 (ENSMODG00000018841)	SCNM1 (ENSMODG00000042115)	TMOD4 (ENSMODG00000018845)	VPS72 (ENSMODG00000018848)	PIP5K1A (ENSMODG00000018854) #20	ENSMODG00000045473 #22	ZNF687 (ENSMODG00000018857) #23	PI4KB (ENSMODG00000018862)	RFX5 (ENSMODG00000018866)	SELENBP1 (ENSMODG00000018869)	PSMB4 (ENSMODG00000018871)	POGZ (ENSMODG00000018875)	ENSMODG00000018879	TUFT1 (ENSMODG00000047337) #31	SNX27 (ENSMODG00000018893)	CELF3 (ENSMODG00000027673)	RIIAD1 (ENSMODG00000039252) #25	MRPL9 (ENSMODG00000046753)	OAZ3 (ENSMODG00000018904)	TDRKH (ENSMODG00000018906)	RORC (ENSMODG00000018911)
Opossum	MODERN SPECIES	6	ENSMODG00000025364	GLRA2 (ENSMODG00000017294)	ENSMODG00000050684	GEMIN8 (ENSMODG00000047585)	GPM6B (ENSMODG00000017304)	ENSMODG00000017308	ENSMODG00000017312	RAB9A (ENSMODG00000025362)	TCEANC (ENSMODG00000025361)	EGFL6 (ENSMODG00000017323)	ENSMODG00000025360	ENSMODG00000047250	ENSMODG00000017326	TLR8 (ENSMODG00000017328)	ENSMODG00000017334	ENSMODG00000028154 #22	FRMPD4 (ENSMODG00000017342)	MSL3 (ENSMODG00000017350)	ARHGAP6 (ENSMODG00000017371)	AMELX (ENSMODG00000017370)	HCCS (ENSMODG00000043457)	ENSMODG00000017377	MID1 (ENSMODG00000017399)	CLCN4 (ENSMODG00000017425)	WWC3 (ENSMODG00000017437)	ENSMODG00000017446	ENSMODG00000025349	SHROOM2 (ENSMODG00000017449)	GPR143 (ENSMODG00000017452)	ENSMODG00000051600	ANOS1 (ENSMODG00000017475)
Eutheria	ANCESTRAL SPECIES		ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00580000082495	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581
Atlantogenata	ANCESTRAL SPECIES	66	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00580000082495	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364
Afrotheria	ANCESTRAL SPECIES	76	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
Tenrec	MODERN SPECIES	3908																PSMD4 (ENSETEG00000013490) #22	ENSETEG00000013492	ZNF687 (ENSETEG00000013493) #23	PI4KB (ENSETEG00000013502)	RFX5 (ENSETEG00000013503)	SELENBP1 (ENSETEG00000013506)
Afrotheria_a	ANCESTRAL SPECIES	75	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
Hyrax	MODERN SPECIES	3217	CERS2 (ENSPCAG00000002617)	ANXA9 (ENSPCAG00000002679)	MINDY1 (ENSPCAG00000002750)	PRUNE1 (ENSPCAG00000002774)	BNIPL (ENSPCAG00000002807)	CDC42SE1 (ENSPCAG00000002881)	MLLT11 (ENSPCAG00000002899)	GABPB2 (ENSPCAG00000002909)	SEMA6C (ENSPCAG00000002952)	TNFAIP8L2 (ENSPCAG00000003022)	LYSMD1 (ENSPCAG00000003030)	SCNM1 (ENSPCAG00000003064)	TMOD4 (ENSPCAG00000003101)	VPS72 (ENSPCAG00000003194)	PIP5K1A (ENSPCAG00000003223) #20	ENSPCAG00000003299 #22
Elephant	MODERN SPECIES	26	CERS2 (ENSLAFG00000028936)	ANXA9 (ENSLAFG00000004011)	MINDY1 (ENSLAFG00000004012)	PRUNE1 (ENSLAFG00000004016)	BNIPL (ENSLAFG00000029342)	C1orf56 (ENSLAFG00000004017)	CDC42SE1 (ENSLAFG00000004019)	MLLT11 (ENSLAFG00000020588)	GABPB2 (ENSLAFG00000004020)	SEMA6C (ENSLAFG00000010983)	LYSMD1 (ENSLAFG00000013404)	SCNM1 (ENSLAFG00000013409)	TMOD4 (ENSLAFG00000013414)	VPS72 (ENSLAFG00000013421)	PIP5K1A (ENSLAFG00000013425) #20	PSMD4 (ENSLAFG00000013429) #22	ZNF687 (ENSLAFG00000030899) #23	PI4KB (ENSLAFG00000005706)	RFX5 (ENSLAFG00000030906)	SELENBP1 (ENSLAFG00000011764)	PSMB4 (ENSLAFG00000014124)	ENSLAFG00000029025	POGZ (ENSLAFG00000011913)	ENSLAFG00000011923	TUFT1 (ENSLAFG00000011926) #31	SNX27 (ENSLAFG00000013322)	CELF3 (ENSLAFG00000030147)	RIIAD1 (ENSLAFG00000027191) #25	ENSLAFG00000006271	OAZ3 (ENSLAFG00000006273)	TDRKH (ENSLAFG00000006274)
Xenarthra	ANCESTRAL SPECIES	147																ENSGT00530000064050 #22	ENSGT00580000082495	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00940000172009	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364
Armadillo	DUPLICATION
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	863																ENSDNOG00000030681 #22	ENSDNOG00000007446	ZNF687 (ENSDNOG00000046703) #23	PI4KB (ENSDNOG00000001720)	RFX5 (ENSDNOG00000035113)	SELENBP1 (ENSDNOG00000023937)	PSMB4 (ENSDNOG00000018255)	POGZ (ENSDNOG00000018257)	ENSDNOG00000012459	TUFT1 (ENSDNOG00000012493) #31	SNX27 (ENSDNOG00000011170)	CELF3 (ENSDNOG00000041501)	ENSDNOG00000047843	ENSDNOG00000011403	OAZ3 (ENSDNOG00000011412)	TDRKH (ENSDNOG00000035650)
Armadillo	MODERN SPECIES	817	ENSDNOG00000042917	ENSDNOG00000043082	KLRK1 (ENSDNOG00000017667)	ENSDNOG00000009809	ENSDNOG00000046475	GABARAPL1 (ENSDNOG00000037816)	TMEM52B (ENSDNOG00000047013)	OLR1 (ENSDNOG00000047907)	CLEC7A (ENSDNOG00000036466)	CLEC1A (ENSDNOG00000010187)	CLEC9A (ENSDNOG00000032755)	CLEC1B (ENSDNOG00000012879)	CLEC12B (ENSDNOG00000006505)	ENSDNOG00000039300	CLEC12A (ENSDNOG00000035200)	ENSDNOG00000036673 #22	CLEC2B (ENSDNOG00000048342)	KLRF1 (ENSDNOG00000007226)	CD69 (ENSDNOG00000049566)	ENSDNOG00000047765	CLEC2D (ENSDNOG00000049773)	KLRB1 (ENSDNOG00000036892)
Armadillo	MODERN SPECIES	2564														ARHGAP32 (ENSDNOG00000038252)	BARX2 (ENSDNOG00000042422)	ENSDNOG00000049087 #22	TMEM45B (ENSDNOG00000008753)	ENSDNOG00000032735
Sloth	MODERN SPECIES	4708																ENSCHOG00000000504 #22
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00910000146771	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00580000082495	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00910000146771	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000173053	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00580000082495	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00910000146771	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00580000082495	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364
Artiodactyla	ANCESTRAL SPECIES		ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00910000146771	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00580000082495	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364
Suina	ANCESTRAL SPECIES	8	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00580000082495	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581
Pig	MODERN SPECIES	12	ANXA9 (ENSSSCG00000006643)	MINDY1 (ENSSSCG00000006642)	PRUNE1 (ENSSSCG00000006641)	BNIPL (ENSSSCG00000006640)	C1orf56 (ENSSSCG00000006639)	MLLT11 (ENSSSCG00000030278)	CDC42SE1 (ENSSSCG00000031881)	GABPB2 (ENSSSCG00000006636)	SEMA6C (ENSSSCG00000006635)	TNFAIP8L2 (ENSSSCG00000006634)	LYSMD1 (ENSSSCG00000020965)	SCNM1 (ENSSSCG00000006632)	TMOD4 (ENSSSCG00000006631)	VPS72 (ENSSSCG00000031869)	PIP5K1A (ENSSSCG00000030547) #20	PSMD4 (ENSSSCG00000006628) #22	ENSSSCG00000034144	ZNF687 (ENSSSCG00000006627) #23	PI4KB (ENSSSCG00000006626)	RFX5 (ENSSSCG00000006625)	SELENBP1 (ENSSSCG00000006624)	PSMB4 (ENSSSCG00000034984)	POGZ (ENSSSCG00000006622)	ENSSSCG00000006621	TUFT1 (ENSSSCG00000006620) #31	SNX27 (ENSSSCG00000006619)	CELF3 (ENSSSCG00000006618)	RIIAD1 (ENSSSCG00000041677) #25	MRPL9 (ENSSSCG00000028343)	OAZ3 (ENSSSCG00000027091)	TDRKH (ENSSSCG00000027770)
Chacoan peccary	MODERN SPECIES	29	MINDY1 (ENSCWAG00000007209)	PRUNE1 (ENSCWAG00000007173)	BNIPL (ENSCWAG00000007128)	C1orf56 (ENSCWAG00000007095)	CDC42SE1 (ENSCWAG00000007079)	MLLT11 (ENSCWAG00000007068)	GABPB2 (ENSCWAG00000007044)	SEMA6C (ENSCWAG00000006983)	TNFAIP8L2 (ENSCWAG00000006959)	LYSMD1 (ENSCWAG00000006908)	SCNM1 (ENSCWAG00000006857)	TMOD4 (ENSCWAG00000006804)	VPS72 (ENSCWAG00000006762)	PIP5K1A (ENSCWAG00000006665) #20	ENSCWAG00000006617	PSMD4 (ENSCWAG00000006591) #22	ZNF687 (ENSCWAG00000006546) #23	PI4KB (ENSCWAG00000006360)	RFX5 (ENSCWAG00000006296)	SELENBP1 (ENSCWAG00000006161)	PSMB4 (ENSCWAG00000006120)	POGZ (ENSCWAG00000005868)	CGN (ENSCWAG00000005751) #32	TUFT1 (ENSCWAG00000005625) #31	SNX27 (ENSCWAG00000005517)	CELF3 (ENSCWAG00000005407)	RIIAD1 (ENSCWAG00000005371) #25	MRPL9 (ENSCWAG00000005339)	OAZ3 (ENSCWAG00000005285)	TDRKH (ENSCWAG00000005128)	LINGO4 (ENSCWAG00000005108)
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00910000146771	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00580000082495	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364
Camelidae	ANCESTRAL SPECIES	6	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
Arabian camel	MODERN SPECIES	13	ANXA9 (ENSCDRG00005018156)	MINDY1 (ENSCDRG00005018219)	PRUNE1 (ENSCDRG00005018303)	BNIPL (ENSCDRG00005018369)	C1orf56 (ENSCDRG00005018387)	CDC42SE1 (ENSCDRG00005018416)	MLLT11 (ENSCDRG00005008910)	GABPB2 (ENSCDRG00005008942)	SEMA6C (ENSCDRG00005009095)	TNFAIP8L2 (ENSCDRG00005009207)	LYSMD1 (ENSCDRG00005009227)	SCNM1 (ENSCDRG00005009273)	TMOD4 (ENSCDRG00005009355)	VPS72 (ENSCDRG00005009442)	PIP5K1A (ENSCDRG00005009542) #20	PSMD4 (ENSCDRG00005009864) #22	ZNF687 (ENSCDRG00005009965) #23	PI4KB (ENSCDRG00005010094)	RFX5 (ENSCDRG00005010605)	SELENBP1 (ENSCDRG00005010725)	PSMB4 (ENSCDRG00005010934)	POGZ (ENSCDRG00005011049)	ENSCDRG00005013658	TUFT1 (ENSCDRG00005013754) #31	SNX27 (ENSCDRG00005014065)	CELF3 (ENSCDRG00005014367)	ENSCDRG00005014479 #25	MRPL9 (ENSCDRG00005014548)	OAZ3 (ENSCDRG00005014745)	TDRKH (ENSCDRG00005015083)	LINGO4 (ENSCDRG00005015167)
Alpaca	MODERN SPECIES	871							ENSVPAG00000011624	BNIPL (ENSVPAG00000011626)	CDC42SE1 (ENSVPAG00000011628)	GABPB2 (ENSVPAG00000011630)	ENSVPAG00000011634	LYSMD1 (ENSVPAG00000011637)	SCNM1 (ENSVPAG00000011638)	TMOD4 (ENSVPAG00000011639)	PIP5K1A (ENSVPAG00000011642) #20	ENSVPAG00000011645 #22
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00910000146771	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00580000082495	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364
Cetacea	DUPLICATION
Cetacea	ANCESTRAL SPECIES		ENSGT01030000234515.a.b.a.a	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112.o.a	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050.i #22	ENSGT00580000082495	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000007302.b	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581
Odontoceti	ANCESTRAL SPECIES		ENSGT00390000016607.b	ENSGT00450000040262.f	ENSGT00450000040262.e.b	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112.o.a	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050.i #22	ENSGT00580000082495	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000007302.b	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581
Odontoceti_a	ANCESTRAL SPECIES		ENSGT01030000234515.a.b.a.a	ENSGT00390000016607.b	ENSGT00450000040262.f	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112.o.a	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050.i #22	ENSGT00580000082495	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364
Odontoceti_b	ANCESTRAL SPECIES		ENSGT01030000234515.a.b.a.a	ENSGT00390000016607.b	ENSGT00450000040262.f	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112.o.a	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050.i #22	ENSGT00580000082495	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364
Monodontidae	ANCESTRAL SPECIES		ENSGT01030000234515.a.b.a.a	ENSGT00390000016607.b	ENSGT00450000040262.f	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112.o.a	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050.i #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
Narwhal	MODERN SPECIES	304	CERS2 (ENSMMNG00015004250)	MINDY1 (ENSMMNG00015004226)	PRUNE1 (ENSMMNG00015004204)	BNIPL (ENSMMNG00015004189)	C1orf56 (ENSMMNG00015004180)	ENSMMNG00015004170	MLLT11 (ENSMMNG00015004162)	GABPB2 (ENSMMNG00015004107)	SEMA6C (ENSMMNG00015003950)	TNFAIP8L2 (ENSMMNG00015003890)	LYSMD1 (ENSMMNG00015003872)	SCNM1 (ENSMMNG00015003851)	TMOD4 (ENSMMNG00015003815)	VPS72 (ENSMMNG00015003778)	PIP5K1A (ENSMMNG00015003697) #20	ENSMMNG00015003620 #22	ZNF687 (ENSMMNG00015003582) #23	PI4KB (ENSMMNG00015003504)	RFX5 (ENSMMNG00015003433)	SELENBP1 (ENSMMNG00015003356)	PSMB4 (ENSMMNG00015003305)	POGZ (ENSMMNG00015003154)	ENSMMNG00015003029	TUFT1 (ENSMMNG00015002908) #31	ENSMMNG00015002872	SNX27 (ENSMMNG00015002820)	CELF3 (ENSMMNG00015002770)	RIIAD1 (ENSMMNG00015002736) #25	MRPL9 (ENSMMNG00015002723)	OAZ3 (ENSMMNG00015002678)	TDRKH (ENSMMNG00015002542)
Beluga whale	MODERN SPECIES	99	CERS2 (ENSDLEG00000008736)	MINDY1 (ENSDLEG00000008706)	PRUNE1 (ENSDLEG00000008668)	BNIPL (ENSDLEG00000008485)	C1orf56 (ENSDLEG00000008441)	CDC42SE1 (ENSDLEG00000008403)	MLLT11 (ENSDLEG00000008383)	GABPB2 (ENSDLEG00000008303)	SEMA6C (ENSDLEG00000008123)	TNFAIP8L2 (ENSDLEG00000011599)	LYSMD1 (ENSDLEG00000011595)	SCNM1 (ENSDLEG00000011581)	TMOD4 (ENSDLEG00000011565)	VPS72 (ENSDLEG00000011554)	PIP5K1A (ENSDLEG00000011526) #20	PSMD4 (ENSDLEG00000011513) #22	ZNF687 (ENSDLEG00000011498) #23	PI4KB (ENSDLEG00000011473)	RFX5 (ENSDLEG00000011424)	SELENBP1 (ENSDLEG00000011401)	PSMB4 (ENSDLEG00000011388)	POGZ (ENSDLEG00000011330)	ENSDLEG00000011272	TUFT1 (ENSDLEG00000011162) #31	SNX27 (ENSDLEG00000011126)	CELF3 (ENSDLEG00000010719)	RIIAD1 (ENSDLEG00000010670) #25	MRPL9 (ENSDLEG00000010649)	OAZ3 (ENSDLEG00000010629)	TDRKH (ENSDLEG00000010583)	LINGO4 (ENSDLEG00000010572)
Vaquita	MODERN SPECIES		CERS2 (ENSPSNG00000002789)	MINDY1 (ENSPSNG00000002812)	PRUNE1 (ENSPSNG00000002841)	BNIPL (ENSPSNG00000002869)	C1orf56 (ENSPSNG00000002883)	CDC42SE1 (ENSPSNG00000002899)	MLLT11 (ENSPSNG00000002930)	GABPB2 (ENSPSNG00000002981)	SEMA6C (ENSPSNG00000003085)	TNFAIP8L2 (ENSPSNG00000003213)	LYSMD1 (ENSPSNG00000003233)	SCNM1 (ENSPSNG00000003271)	TMOD4 (ENSPSNG00000003298)	VPS72 (ENSPSNG00000003334)	PIP5K1A (ENSPSNG00000003403) #20	ENSPSNG00000003494 #22	ENSPSNG00000003516	ZNF687 (ENSPSNG00000003543) #23	PI4KB (ENSPSNG00000003599)	RFX5 (ENSPSNG00000003643)	SELENBP1 (ENSPSNG00000003697)	PSMB4 (ENSPSNG00000000095)	POGZ (ENSPSNG00000000153)	ENSPSNG00000000227	TUFT1 (ENSPSNG00000000346) #31	SNX27 (ENSPSNG00000000477)	ENSPSNG00000000510	CELF3 (ENSPSNG00000000542)	RIIAD1 (ENSPSNG00000000589) #25	MRPL9 (ENSPSNG00000000615)	OAZ3 (ENSPSNG00000000680)
Dolphin	MODERN SPECIES	769		SETDB1 (ENSTTRG00000006966)	CERS2 (ENSTTRG00000006978)	MINDY1 (ENSTTRG00000006986)	PRUNE1 (ENSTTRG00000006991)	BNIPL (ENSTTRG00000006994)	CDC42SE1 (ENSTTRG00000007000)	MLLT11 (ENSTTRG00000007002)	GABPB2 (ENSTTRG00000007003)	SEMA6C (ENSTTRG00000007007)	TNFAIP8L2 (ENSTTRG00000007009)	SCNM1 (ENSTTRG00000007011)	TMOD4 (ENSTTRG00000007013)	VPS72 (ENSTTRG00000007015)	PIP5K1A (ENSTTRG00000007016) #20	PSMD4 (ENSTTRG00000007019) #22	ZNF687 (ENSTTRG00000007020) #23	PI4KB (ENSTTRG00000007021)	RFX5 (ENSTTRG00000007023)	SELENBP1 (ENSTTRG00000007024)
Sperm whale	MODERN SPECIES	15	ENSA (ENSPCTG00005008741)	MCL1 (ENSPCTG00005008658)	PRUNE1 (ENSPCTG00005008633)	BNIPL (ENSPCTG00005008602)	C1orf56 (ENSPCTG00005008573)	CDC42SE1 (ENSPCTG00005008518)	MLLT11 (ENSPCTG00005020260)	GABPB2 (ENSPCTG00005020187)	SEMA6C (ENSPCTG00005019748)	TNFAIP8L2 (ENSPCTG00005019706)	LYSMD1 (ENSPCTG00005019659)	SCNM1 (ENSPCTG00005019564)	TMOD4 (ENSPCTG00005019489)	VPS72 (ENSPCTG00005019430)	PIP5K1A (ENSPCTG00005019133) #20	PSMD4 (ENSPCTG00005019075) #22	PI4KB (ENSPCTG00005019046)	RFX5 (ENSPCTG00005019016)	SELENBP1 (ENSPCTG00005018804)	ENSPCTG00005018784	PSMB4 (ENSPCTG00005018741)	POGZ (ENSPCTG00005018518)	TDRKH (ENSPCTG00005018417)	OAZ3 (ENSPCTG00005018289)	MRPL9 (ENSPCTG00005018221)	RIIAD1 (ENSPCTG00005018184) #25	CELF3 (ENSPCTG00005017933)	SNX27 (ENSPCTG00005017684)	TUFT1 (ENSPCTG00005017363) #31	THEM4 (ENSPCTG00005017250) #17	S100A10 (ENSPCTG00005017205)
Blue whale	MODERN SPECIES		CERS2 (ENSBMSG00010015712)	MINDY1 (ENSBMSG00010015736)	PRUNE1 (ENSBMSG00010015772)	BNIPL (ENSBMSG00010015820)	C1orf56 (ENSBMSG00010015857)	ENSBMSG00010015864	MLLT11 (ENSBMSG00010015877)	GABPB2 (ENSBMSG00010015897)	SEMA6C (ENSBMSG00010015964)	TNFAIP8L2 (ENSBMSG00010016214)	LYSMD1 (ENSBMSG00010016236)	SCNM1 (ENSBMSG00010016290)	TMOD4 (ENSBMSG00010016336)	VPS72 (ENSBMSG00010016387)	PIP5K1A (ENSBMSG00010016429) #20	ENSBMSG00010016666 #22	ZNF687 (ENSBMSG00010016725) #23	PI4KB (ENSBMSG00010016773)	RFX5 (ENSBMSG00010016931)	SELENBP1 (ENSBMSG00010016965)	ENSBMSG00010017117	PSMB4 (ENSBMSG00010017161)	POGZ (ENSBMSG00010017219)	CGN (ENSBMSG00010017607) #32	TUFT1 (ENSBMSG00010017718) #31	SNX27 (ENSBMSG00010017840)	CELF3 (ENSBMSG00010018090)	RIIAD1 (ENSBMSG00010018208) #25	MRPL9 (ENSBMSG00010018243)	OAZ3 (ENSBMSG00010018287)	ENSBMSG00010018451
Cetacea	ANCESTRAL SPECIES	19	ENSGT00950000182941.b.a	ENSGT01100000263512.b.b.b	ENSGT00390000009902	ENSGT00530000063353.b	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425.a.a.b.b	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000162864.b	ENSGT00940000163347	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00530000064050.j #22	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT01020000231229	ENSGT00940000164798	ENSGT00550000074618.a.b.`b	ENSGT00560000078638	ENSGT00940000162721	ENSGT00940000160971	ENSGT00950000183087.A.b.a	ENSGT00940000162864.a	ENSGT00940000161248	ENSGT00940000165847	ENSGT00950000183189.a.b.b	ENSGT00390000007953
Odontoceti	ANCESTRAL SPECIES	19	ENSGT00950000182941.b.a	ENSGT01100000263512.b.b.b	ENSGT00390000009902	ENSGT00530000063353.b	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425.a.a.b.b	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000162864.b	ENSGT00940000163347	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00530000064050.j #22	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT01010000223978	ENSGT00940000160971	ENSGT00950000183087.A.b.a.e	ENSGT00940000162864.a	ENSGT00940000161248	ENSGT00940000165847	ENSGT00950000183189.a.b.b	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000163633	ENSGT00940000158388
Odontoceti_a	ANCESTRAL SPECIES	21	ENSGT00950000182941.b.a	ENSGT01100000263512.b.b.b	ENSGT00390000009902.k	ENSGT00530000063353.b	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425.a.a.b.b	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000162864.b	ENSGT00940000163347	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00530000064050.j #22	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT01010000223978	ENSGT00940000160971	ENSGT00950000183087.A.b.a.e	ENSGT00940000161248	ENSGT00950000183189.a.b.b	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000012182	ENSGT00910000144363	ENSGT01030000234522.C.b.e.a.a.a.a.a.b	ENSGT00940000153582.b.a.a.b
Odontoceti_b	ANCESTRAL SPECIES	17	ENSGT00940000154833	ENSGT00950000182941.b.a	ENSGT01100000263512.b.b.b	ENSGT00390000009902.k	ENSGT00530000063353.b	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425.a.a.b.b	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000163347	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00530000064050.j #22	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT01020000231229	ENSGT00940000164798	ENSGT00950000183375	ENSGT00940000160971	ENSGT00950000183087.A.b.a.e	ENSGT00940000161248	ENSGT00950000183189.a.b.b	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00390000012182	ENSGT00910000144363
Monodontidae	ANCESTRAL SPECIES	19	ENSGT00940000154833	ENSGT00950000182941.b.a	ENSGT01100000263512.b.b.b	ENSGT00390000009902.k	ENSGT00530000063353.b	ENSGT01070000253816.a.b	ENSGT00940000158723	ENSGT00940000153425.a.a.b.b	ENSGT00940000162539	ENSGT00940000160788	ENSGT00940000162864.b	ENSGT00940000162313	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00530000064050.j #22	ENSGT00390000004226	ENSGT00390000002886.b.b	ENSGT00940000162359	ENSGT01020000231229	ENSGT00940000164798	ENSGT00950000183375	ENSGT00940000160971	ENSGT00950000183087.A.b.a.e	ENSGT00940000161248	ENSGT00950000183189.a.b.b	ENSGT00390000007953	ENSGT00950000182974.a.a.a.a	ENSGT00940000156803	ENSGT00940000163633	ENSGT00940000158388
Narwhal	MODERN SPECIES	309	ENSMMNG00015015775	VGLL1 (ENSMMNG00015015815)	CD40LG (ENSMMNG00015015860)	ENSMMNG00015015892	ARHGEF6 (ENSMMNG00015015921)	RBMX (ENSMMNG00015015962)	ENSMMNG00015016034	GPR101 (ENSMMNG00015016060)	ZIC3 (ENSMMNG00015016087)	ENSMMNG00015016202	ENSMMNG00015016313	ENSMMNG00015016406	F9 (ENSMMNG00015016457)	MCF2 (ENSMMNG00015016750)	ATP11C (ENSMMNG00015018100)	ENSMMNG00015018741 #22	ENSMMNG00015018772	ENSMMNG00015018792	SOX3 (ENSMMNG00015018809)	ENSMMNG00015018831	ENSMMNG00015018855	LDOC1 (ENSMMNG00015018872)	ENSMMNG00015018884	SLITRK4 (ENSMMNG00015018897)	ENSMMNG00015018909	SLITRK2 (ENSMMNG00015018926)	FMR1 (ENSMMNG00015019001)	ENSMMNG00015019165	ENSMMNG00015019193	AFF2 (ENSMMNG00015019223)	IDS (ENSMMNG00015019300)
Beluga whale	MODERN SPECIES		MAP7D3 (ENSDLEG00000001486)	BRS3 (ENSDLEG00000001472)	HTATSF1 (ENSDLEG00000001466)	VGLL1 (ENSDLEG00000001448)	CD40LG (ENSDLEG00000001439)	ARHGEF6 (ENSDLEG00000001336)	RBMX (ENSDLEG00000001291)	GPR101 (ENSDLEG00000001283)	GPR101 (ENSDLEG00000001280)	ZIC3 (ENSDLEG00000001271)	ENSDLEG00000001240	FGF13 (ENSDLEG00000001212)	ENSDLEG00000001192	F9 (ENSDLEG00000001177)	MCF2 (ENSDLEG00000001070)	ENSDLEG00000001046 #22	ATP11C (ENSDLEG00000000892)	ENSDLEG00000000855	SOX3 (ENSDLEG00000000843)	ENSDLEG00000000822	ENSDLEG00000000818	ENSDLEG00000000805	LDOC1 (ENSDLEG00000000802)	SLITRK4 (ENSDLEG00000000783)	ENSDLEG00000000774	SLITRK2 (ENSDLEG00000000769)	FMR1 (ENSDLEG00000000712)	ENSDLEG00000000683	AFF2 (ENSDLEG00000000636)	IDS (ENSDLEG00000000599)	CUNHXorf40A (ENSDLEG00000000594)
Vaquita	MODERN SPECIES	34	HTATSF1 (ENSPSNG00000011905)	VGLL1 (ENSPSNG00000011937)	CD40LG (ENSPSNG00000011995)	ARHGEF6 (ENSPSNG00000012148)	RBMX (ENSPSNG00000012445)	ENSPSNG00000012576	ENSPSNG00000012678	ENSPSNG00000012761	GPR101 (ENSPSNG00000012806)	ZIC3 (ENSPSNG00000012830)	ENSPSNG00000012941	ENSPSNG00000013159	F9 (ENSPSNG00000013234)	MCF2 (ENSPSNG00000013789)	ATP11C (ENSPSNG00000016149)	ENSPSNG00000016284 #22	ENSPSNG00000016459	SOX3 (ENSPSNG00000016488)	ENSPSNG00000016506	ENSPSNG00000016567	ENSPSNG00000016628	ENSPSNG00000016676	LDOC1 (ENSPSNG00000016732)	SLITRK4 (ENSPSNG00000016771)	ENSPSNG00000016788	ENSPSNG00000016802	ENSPSNG00000016809	SLITRK2 (ENSPSNG00000016832)	FMR1 (ENSPSNG00000016888)	ENSPSNG00000017140	AFF2 (ENSPSNG00000017260)
Blue whale	MODERN SPECIES	40	BRS3 (ENSBMSG00010017293)	HTATSF1 (ENSBMSG00010017339)	VGLL1 (ENSBMSG00010017395)	CD40LG (ENSBMSG00010017421)	ARHGEF6 (ENSBMSG00010017493)	RBMX (ENSBMSG00010017628)	ENSBMSG00010017688	GPR101 (ENSBMSG00010017730)	ZIC3 (ENSBMSG00010017747)	ENSBMSG00010017800	ENSBMSG00010017842	ENSBMSG00010017882	F9 (ENSBMSG00010018174)	MCF2 (ENSBMSG00010018394)	ATP11C (ENSBMSG00010020392)	ENSBMSG00010020588 #22	ENSBMSG00010020599	ENSBMSG00010020607	ENSBMSG00010020621	SOX3 (ENSBMSG00010020634)	ENSBMSG00010020647	LDOC1 (ENSBMSG00010020655)	SLITRK4 (ENSBMSG00010020675)	ENSBMSG00010020683	ENSBMSG00010020693	ENSBMSG00010020705	ENSBMSG00010020713	ENSBMSG00010020716	TCEAL1 (ENSBMSG00010020720)	ENSBMSG00010020726	MORF4L2 (ENSBMSG00010020731)
Pecora	ANCESTRAL SPECIES	2	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00910000146771	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
Percora_a	ANCESTRAL SPECIES	1	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00910000146771	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000153169.A.b.b.a.a.a.a	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000182891.a.a.b.a.a.a.b.a.b	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364
Bovidae	ANCESTRAL SPECIES	1	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00910000146771	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000153169.A.b.b.a.a.a.a	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000182891.a.a.b.a.a.a.b.a.b	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00950000186450
Bovinae	ANCESTRAL SPECIES	1	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000153169.A.b.b.a.a.a.a	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31	ENSGT00950000182891.a.a.b.a.a.a.b.a.b	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581
Bos	ANCESTRAL SPECIES		ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000153169.A.b.b.a.a.a.a	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31	ENSGT00950000182891.a.a.b.a.a.a.b.a.b	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581
Bos_b	ANCESTRAL SPECIES	1	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000153169.A.b.b.a.a.a.a	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00940000154539.b.u	ENSGT00950000183065.B #31	ENSGT00950000182891.a.a.b.a.a.a.b.a.b	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581
Hybrid Bos Indicus	MODERN SPECIES	22	MINDY1 (ENSBIXG00005027538)	PRUNE1 (ENSBIXG00005027606)	BNIPL (ENSBIXG00005027654)	C1orf56 (ENSBIXG00005027664)	CDC42SE1 (ENSBIXG00005027674)	MLLT11 (ENSBIXG00005004758)	GABPB2 (ENSBIXG00005027729)	SEMA6C (ENSBIXG00005027801)	TNFAIP8L2 (ENSBIXG00005027841)	LYSMD1 (ENSBIXG00005027861)	SCNM1 (ENSBIXG00005027892)	TMOD4 (ENSBIXG00005027928)	VPS72 (ENSBIXG00005027956)	ENSBIXG00005028021	PIP5K1A (ENSBIXG00005028062) #20	PSMD4 (ENSBIXG00005028116) #22	ZNF687 (ENSBIXG00005028143) #23	PI4KB (ENSBIXG00005006541)	RFX5 (ENSBIXG00005028266)	SELENBP1 (ENSBIXG00005028320)	PSMB4 (ENSBIXG00005028359)	POGZ (ENSBIXG00005004935)	ENSBIXG00005004960	ENSBIXG00005002369	TUFT1 (ENSBIXG00005028855) #31	ENSBIXG00005005039	SNX27 (ENSBIXG00005005088)	CELF3 (ENSBIXG00005005120)	RIIAD1 (ENSBIXG00005001997) #25	MRPL9 (ENSBIXG00005005138)	OAZ3 (ENSBIXG00005001942)
Cow	MODERN SPECIES	22	CERS2 (ENSBTAG00000000099)	ANXA9 (ENSBTAG00000015304)	MINDY1 (ENSBTAG00000015329)	PRUNE1 (ENSBTAG00000015336)	BNIPL (ENSBTAG00000015345)	C3H1orf56 (ENSBTAG00000015349)	MLLT11 (ENSBTAG00000015369)	GABPB2 (ENSBTAG00000015371)	SEMA6C (ENSBTAG00000007281)	TNFAIP8L2 (ENSBTAG00000020394)	LYSMD1 (ENSBTAG00000020395)	SCNM1 (ENSBTAG00000018070)	TMOD4 (ENSBTAG00000018071)	VPS72 (ENSBTAG00000018074)	PIP5K1A (ENSBTAG00000006099) #20	PSMD4 (ENSBTAG00000006101) #22	ZNF687 (ENSBTAG00000007318) #23	PI4KB (ENSBTAG00000007320)	RFX5 (ENSBTAG00000017580)	SELENBP1 (ENSBTAG00000008091)	ENSBTAG00000050679	PSMB4 (ENSBTAG00000021288)	POGZ (ENSBTAG00000021289)	CGN (ENSBTAG00000017564)	ENSBTAG00000024407	TUFT1 (ENSBTAG00000017566) #31	ENSBTAG00000054946	SNX27 (ENSBTAG00000001942)	CELF3 (ENSBTAG00000019131)	MRPL9 (ENSBTAG00000000797)	OAZ3 (ENSBTAG00000021591)
Bos_a	ANCESTRAL SPECIES	47	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000153169.A.b.b.a.a.a.a	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00950000186450
Wild yak	MODERN SPECIES	688	MINDY1 (ENSBMUG00000024003)	PRUNE1 (ENSBMUG00000024019)	BNIPL (ENSBMUG00000024035)	C1orf56 (ENSBMUG00000024042)	CDC42SE1 (ENSBMUG00000024051)	MLLT11 (ENSBMUG00000024057)	GABPB2 (ENSBMUG00000024085)	SEMA6C (ENSBMUG00000024160)	TNFAIP8L2 (ENSBMUG00000024178)	LYSMD1 (ENSBMUG00000024179)	SCNM1 (ENSBMUG00000024189)	TMOD4 (ENSBMUG00000024204)	VPS72 (ENSBMUG00000024221)	ENSBMUG00000024232	PIP5K1A (ENSBMUG00000024305) #20	PSMD4 (ENSBMUG00000024327) #22	ZNF687 (ENSBMUG00000024351) #23	PI4KB (ENSBMUG00000024395)	RFX5 (ENSBMUG00000024424)	SELENBP1 (ENSBMUG00000024445)	ENSBMUG00000024461	PSMB4 (ENSBMUG00000024466)	POGZ (ENSBMUG00000024528)	CGN (ENSBMUG00000024577) #32	TUFT1 (ENSBMUG00000024610) #31	SNX27 (ENSBMUG00000024681)	CELF3 (ENSBMUG00000024707)	RIIAD1 (ENSBMUG00000024721) #25	MRPL9 (ENSBMUG00000024735)	OAZ3 (ENSBMUG00000024748)	ENSBMUG00000024752
Domestic yak	MODERN SPECIES	22	MINDY1 (ENSBGRG00000001466)	PRUNE1 (ENSBGRG00000001499)	BNIPL (ENSBGRG00000001530)	C1orf56 (ENSBGRG00000001556)	CDC42SE1 (ENSBGRG00000001575)	MLLT11 (ENSBGRG00000001584)	GABPB2 (ENSBGRG00000001610)	SEMA6C (ENSBGRG00000001699)	TNFAIP8L2 (ENSBGRG00000001735)	LYSMD1 (ENSBGRG00000001747)	SCNM1 (ENSBGRG00000001758)	TMOD4 (ENSBGRG00000001770)	VPS72 (ENSBGRG00000001785)	ENSBGRG00000001794	PIP5K1A (ENSBGRG00000001811) #20	PSMD4 (ENSBGRG00000001873) #22	ZNF687 (ENSBGRG00000001902) #23	PI4KB (ENSBGRG00000001920)	RFX5 (ENSBGRG00000001940)	SELENBP1 (ENSBGRG00000001985)	ENSBGRG00000002099	PSMB4 (ENSBGRG00000002110)	POGZ (ENSBGRG00000002163)	ENSBGRG00000002259	TUFT1 (ENSBGRG00000002325) #31	ENSBGRG00000002354	ENSBGRG00000002366	SNX27 (ENSBGRG00000002390)	CELF3 (ENSBGRG00000002490)	RIIAD1 (ENSBGRG00000002574) #25	ENSBGRG00000002612
American bison	MODERN SPECIES	3295							MLLT11 (ENSBBBG00000012991)	GABPB2 (ENSBBBG00000002596)	SEMA6C (ENSBBBG00000001680)	TNFAIP8L2 (ENSBBBG00000013115)	LYSMD1 (ENSBBBG00000013120)	SCNM1 (ENSBBBG00000013137)	TMOD4 (ENSBBBG00000013151)	VPS72 (ENSBBBG00000002658)	PIP5K1A (ENSBBBG00000013247) #20	PSMD4 (ENSBBBG00000002695) #22	ZNF687 (ENSBBBG00000002701) #23	PI4KB (ENSBBBG00000013345)	RFX5 (ENSBBBG00000013374)	SELENBP1 (ENSBBBG00000002743)	PSMB4 (ENSBBBG00000013410)	POGZ (ENSBBBG00000013525)	CGN (ENSBBBG00000013551) #32	ENSBBBG00000013560	TUFT1 (ENSBBBG00000013630) #31	ENSBBBG00000013643	SNX27 (ENSBBBG00000013687)	CELF3 (ENSBBBG00000002911)	RIIAD1 (ENSBBBG00000013726) #25	MRPL9 (ENSBBBG00000002933)	OAZ3 (ENSBBBG00000013776)
Caprinae	ANCESTRAL SPECIES	2	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00910000146771	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000153169.A.b.b.a.a.a.a	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000164533.h	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00950000186450
Goat	MODERN SPECIES	22	MINDY1 (ENSCHIG00000018101)	PRUNE1 (ENSCHIG00000011605)	BNIPL (ENSCHIG00000025222)	CDC42SE1 (ENSCHIG00000009064)	ENSCHIG00000010765	MLLT11 (ENSCHIG00000001570)	GABPB2 (ENSCHIG00000017762)	SEMA6C (ENSCHIG00000027158)	TNFAIP8L2 (ENSCHIG00000008444)	LYSMD1 (ENSCHIG00000025538)	SCNM1 (ENSCHIG00000014264)	TMOD4 (ENSCHIG00000023166)	VPS72 (ENSCHIG00000014800)	ENSCHIG00000002422	PIP5K1A (ENSCHIG00000023785) #20	PSMD4 (ENSCHIG00000025638) #22	ENSCHIG00000011191	ZNF687 (ENSCHIG00000011195) #23	PI4KB (ENSCHIG00000022898)	RFX5 (ENSCHIG00000020616)	SELENBP1 (ENSCHIG00000017025)	ENSCHIG00000002631	PSMB4 (ENSCHIG00000019694)	POGZ (ENSCHIG00000020311)	ENSCHIG00000022585	TUFT1 (ENSCHIG00000025397) #31	SNX27 (ENSCHIG00000021069)	ENSCHIG00000012675	CELF3 (ENSCHIG00000025847)	RIIAD1 (ENSCHIG00000025840) #25	MRPL9 (ENSCHIG00000011797)
Rambouillet Sheep	MODERN SPECIES		MINDY1 (ENSOARG00020011596)	PRUNE1 (ENSOARG00020011679)	BNIPL (ENSOARG00020011956)	C1orf56 (ENSOARG00020011990)	CDC42SE1 (ENSOARG00020012045)	MLLT11 (ENSOARG00020012089)	GABPB2 (ENSOARG00020012123)	SEMA6C (ENSOARG00020012397)	TNFAIP8L2 (ENSOARG00020013414)	LYSMD1 (ENSOARG00020013436)	SCNM1 (ENSOARG00020013488)	TMOD4 (ENSOARG00020013556)	VPS72 (ENSOARG00020013630)	ENSOARG00020013691	PIP5K1A (ENSOARG00020013737) #20	PSMD4 (ENSOARG00020014215) #22	ENSOARG00020014459	ZNF687 (ENSOARG00020014502) #23	PI4KB (ENSOARG00020014612)	RFX5 (ENSOARG00020015129)	SELENBP1 (ENSOARG00020015215)	ENSOARG00020015335	PSMB4 (ENSOARG00020015380)	POGZ (ENSOARG00020015459)	ENSOARG00020016001	TUFT1 (ENSOARG00020016156) #31	SNX27 (ENSOARG00020016963)	CELF3 (ENSOARG00020017622)	RIIAD1 (ENSOARG00020017857) #25	MRPL9 (ENSOARG00020017917)	OAZ3 (ENSOARG00020018023)
Siberian musk deer	DUPLICATION
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	113	NARS2 (ENSMMSG00000004571)	GAB2 (ENSMMSG00000004659)	USP35 (ENSMMSG00000004718)	KCTD21 (ENSMMSG00000004784)	ENSMMSG00000004807	ALG8 (ENSMMSG00000004825)	NDUFC2 (ENSMMSG00000004904)	THRSP (ENSMMSG00000004930)	KCTD14 (ENSMMSG00000004944)	INTS4 (ENSMMSG00000004977)	AAMDC (ENSMMSG00000005194)	RSF1 (ENSMMSG00000005280)	ENSMMSG00000005371	AQP11 (ENSMMSG00000005614)	ENSMMSG00000005636	ENSMMSG00000005665 #22	PAK1 (ENSMMSG00000005702)	GDPD4 (ENSMMSG00000005765)
Siberian musk deer	MODERN SPECIES	134																ENSMMSG00000013355 #22	SS18 (ENSMMSG00000013386)	PSMA8 (ENSMMSG00000013624)	TAF4B (ENSMMSG00000013698)	KCTD1 (ENSMMSG00000013715)	AQP4 (ENSMMSG00000013736)	CHST9 (ENSMMSG00000013757)	ENSMMSG00000013798	CDH2 (ENSMMSG00000013812)	ENSMMSG00000013827	DSC3 (ENSMMSG00000013852)	DSC2 (ENSMMSG00000013889)	DSC1 (ENSMMSG00000014056)	DSG1 (ENSMMSG00000014105)	DSG4 (ENSMMSG00000014133)	DSG3 (ENSMMSG00000014240)
Siberian musk deer	MODERN SPECIES	247	MINDY1 (ENSMMSG00000019051)	PRUNE1 (ENSMMSG00000018956)	BNIPL (ENSMMSG00000018916)	C1orf56 (ENSMMSG00000018885)	ENSMMSG00000018858	MLLT11 (ENSMMSG00000018852)	GABPB2 (ENSMMSG00000018775)	SEMA6C (ENSMMSG00000018695)	TNFAIP8L2 (ENSMMSG00000018650)	LYSMD1 (ENSMMSG00000018627)	SCNM1 (ENSMMSG00000018590)	TMOD4 (ENSMMSG00000018543)	VPS72 (ENSMMSG00000018503)	ENSMMSG00000018491	PIP5K1A (ENSMMSG00000018226) #20	ENSMMSG00000018174 #22	ZNF687 (ENSMMSG00000018119) #23	PI4KB (ENSMMSG00000017818)	RFX5 (ENSMMSG00000017747)	SELENBP1 (ENSMMSG00000017703)	ENSMMSG00000017647	PSMB4 (ENSMMSG00000017613)	POGZ (ENSMMSG00000017404)	ENSMMSG00000017355	TUFT1 (ENSMMSG00000017243) #31	ENSMMSG00000017218	SNX27 (ENSMMSG00000017082)	CELF3 (ENSMMSG00000016967)	RIIAD1 (ENSMMSG00000016900) #25	MRPL9 (ENSMMSG00000016852)	OAZ3 (ENSMMSG00000016664)
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00580000082495	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364
Carnivora	ANCESTRAL SPECIES	1	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00580000082495	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364
Felidae	ANCESTRAL SPECIES	10	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00580000082495	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581
Panthera	ANCESTRAL SPECIES	40	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00580000082495	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581
Tiger	MODERN SPECIES	275	ANXA9 (ENSPTIG00000021585)	MINDY1 (ENSPTIG00000000898)	PRUNE1 (ENSPTIG00000003242)	BNIPL (ENSPTIG00000007131)	C1orf56 (ENSPTIG00000008272)	CDC42SE1 (ENSPTIG00000008491)	MLLT11 (ENSPTIG00000005928)	GABPB2 (ENSPTIG00000009109)	ENSPTIG00000009931	TNFAIP8L2 (ENSPTIG00000005950)	LYSMD1 (ENSPTIG00000011723)	SCNM1 (ENSPTIG00000012793)	TMOD4 (ENSPTIG00000013183)	VPS72 (ENSPTIG00000013626)	PIP5K1A (ENSPTIG00000015750) #20	PSMD4 (ENSPTIG00000001038) #22	ENSPTIG00000006562	ZNF687 (ENSPTIG00000007625) #23	PI4KB (ENSPTIG00000010376)	RFX5 (ENSPTIG00000014291)	SELENBP1 (ENSPTIG00000016772)	PSMB4 (ENSPTIG00000019518)	POGZ (ENSPTIG00000020597)	ENSPTIG00000006973	TUFT1 (ENSPTIG00000007975) #31	SNX27 (ENSPTIG00000011081)	CELF3 (ENSPTIG00000013450)	ENSPTIG00000016080	MRPL9 (ENSPTIG00000017020)	OAZ3 (ENSPTIG00000018493)	TDRKH (ENSPTIG00000019916)
Panthera_a	ANCESTRAL SPECIES	38	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00580000082495	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364
lion	MODERN SPECIES	8	ANXA9 (ENSPLOG00000020367)	MINDY1 (ENSPLOG00000020401)	PRUNE1 (ENSPLOG00000020473)	BNIPL (ENSPLOG00000020559)	C1orf56 (ENSPLOG00000020617)	CDC42SE1 (ENSPLOG00000020633)	MLLT11 (ENSPLOG00000020660)	GABPB2 (ENSPLOG00000020686)	SEMA6C (ENSPLOG00000020778)	TNFAIP8L2 (ENSPLOG00000021032)	LYSMD1 (ENSPLOG00000021058)	SCNM1 (ENSPLOG00000021105)	TMOD4 (ENSPLOG00000021143)	VPS72 (ENSPLOG00000021188)	PIP5K1A (ENSPLOG00000021268) #20	PSMD4 (ENSPLOG00000021489) #22	ZNF687 (ENSPLOG00000021523) #23	PI4KB (ENSPLOG00000021576)	ENSPLOG00000021667	SELENBP1 (ENSPLOG00000021705)	ENSPLOG00000007650	PSMB4 (ENSPLOG00000007693)	POGZ (ENSPLOG00000007770)	CGN (ENSPLOG00000007937) #32	TUFT1 (ENSPLOG00000008146) #31	SNX27 (ENSPLOG00000008397)	CELF3 (ENSPLOG00000008678)	RIIAD1 (ENSPLOG00000008817) #25	MRPL9 (ENSPLOG00000008857)	OAZ3 (ENSPLOG00000008964)	TDRKH (ENSPLOG00000009153)
leopard	MODERN SPECIES	149	ANXA9 (ENSPPRG00000003017)	MINDY1 (ENSPPRG00000002925)	PRUNE1 (ENSPPRG00000002301)	BNIPL (ENSPPRG00000001137)	C1orf56 (ENSPPRG00000000789)	CDC42SE1 (ENSPPRG00000000753)	MLLT11 (ENSPPRG00000015706)	GABPB2 (ENSPPRG00000021737)	SEMA6C (ENSPPRG00000016004)	TNFAIP8L2 (ENSPPRG00000015393)	LYSMD1 (ENSPPRG00000009376)	SCNM1 (ENSPPRG00000008819)	TMOD4 (ENSPPRG00000008141)	VPS72 (ENSPPRG00000008110)	PIP5K1A (ENSPPRG00000006756) #20	PSMD4 (ENSPPRG00000004591) #22	ENSPPRG00000003453	ZNF687 (ENSPPRG00000003190) #23	PI4KB (ENSPPRG00000002895)	RFX5 (ENSPPRG00000001697)	SELENBP1 (ENSPPRG00000022754)	PSMB4 (ENSPPRG00000023427)	POGZ (ENSPPRG00000023722)	CGN (ENSPPRG00000024471) #32	TUFT1 (ENSPPRG00000020942) #31	SNX27 (ENSPPRG00000012629)	CELF3 (ENSPPRG00000004600)	RIIAD1 (ENSPPRG00000003657) #25	MRPL9 (ENSPPRG00000003556)	OAZ3 (ENSPPRG00000002633)	TDRKH (ENSPPRG00000001585)
Cat	MODERN SPECIES	239	ENSFCAG00000052357	MINDY1 (ENSFCAG00000009660)	PRUNE1 (ENSFCAG00000044569)	BNIPL (ENSFCAG00000032352)	C1orf56 (ENSFCAG00000041587)	CDC42SE1 (ENSFCAG00000052064)	MLLT11 (ENSFCAG00000027874)	GABPB2 (ENSFCAG00000033249)	SEMA6C (ENSFCAG00000005557)	TNFAIP8L2 (ENSFCAG00000005558)	LYSMD1 (ENSFCAG00000036601)	SCNM1 (ENSFCAG00000005560)	TMOD4 (ENSFCAG00000005561)	VPS72 (ENSFCAG00000005562)	PIP5K1A (ENSFCAG00000005563) #20	PSMD4 (ENSFCAG00000042092) #22	ZNF687 (ENSFCAG00000005566) #23	PI4KB (ENSFCAG00000005567)	RFX5 (ENSFCAG00000005568)	SELENBP1 (ENSFCAG00000001859)	PSMB4 (ENSFCAG00000001861)	POGZ (ENSFCAG00000001864)	CGN (ENSFCAG00000004072)	TUFT1 (ENSFCAG00000004073) #31	SNX27 (ENSFCAG00000041414)	CELF3 (ENSFCAG00000007908)	RIIAD1 (ENSFCAG00000019369) #25	MRPL9 (ENSFCAG00000043355)	OAZ3 (ENSFCAG00000010979)	TDRKH (ENSFCAG00000010980)	LINGO4 (ENSFCAG00000010784)
Caniformia	ANCESTRAL SPECIES	31	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
Caniformia_b	ANCESTRAL SPECIES	35	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
Mustelinae	ANCESTRAL SPECIES	81	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
American mink	DUPLICATION
American mink	MODERN SPECIES	316	ANXA9 (ENSNVIG00000016007)	MINDY1 (ENSNVIG00000015928)	PRUNE1 (ENSNVIG00000015904)	BNIPL (ENSNVIG00000015873)	C1orf56 (ENSNVIG00000015864)	CDC42SE1 (ENSNVIG00000015858)	GABPB2 (ENSNVIG00000015834)	SEMA6C (ENSNVIG00000015653)	TNFAIP8L2 (ENSNVIG00000015633)	LYSM1 (ENSNVIG00000015619)	SCNM1 (ENSNVIG00000015600)	TMOD4 (ENSNVIG00000015581)	VPS72 (ENSNVIG00000015557)	PIP5K1A (ENSNVIG00000015442) #20	ENSNVIG00000015356 #22	ENSNVIG00000015320 #22	ZNF687 (ENSNVIG00000015264) #23	PI4KB (ENSNVIG00000015216)	RFX5 (ENSNVIG00000015158)	SELENBP1 (ENSNVIG00000015102)	PSMB4 (ENSNVIG00000015080)	POGZ (ENSNVIG00000014867)	ENSNVIG00000014806	TUFT1 (ENSNVIG00000014726) #31	SNX27 (ENSNVIG00000014632)	CELF3 (ENSNVIG00000014558)	RIIAD1 (ENSNVIG00000014540) #25	MRPL9 (ENSNVIG00000014498)	OAZ3 (ENSNVIG00000014414)	TDRKH (ENSNVIG00000014276)	LINGO4 (ENSNVIG00000014264)
American mink	MODERN SPECIES	316	CERS2 (ENSNVIG00000016039)	ANXA9 (ENSNVIG00000016007)	MINDY1 (ENSNVIG00000015928)	PRUNE1 (ENSNVIG00000015904)	BNIPL (ENSNVIG00000015873)	C1orf56 (ENSNVIG00000015864)	CDC42SE1 (ENSNVIG00000015858)	GABPB2 (ENSNVIG00000015834)	SEMA6C (ENSNVIG00000015653)	TNFAIP8L2 (ENSNVIG00000015633)	LYSM1 (ENSNVIG00000015619)	SCNM1 (ENSNVIG00000015600)	TMOD4 (ENSNVIG00000015581)	VPS72 (ENSNVIG00000015557)	PIP5K1A (ENSNVIG00000015442) #20	ENSNVIG00000015356 #22	ENSNVIG00000015320 #22	ZNF687 (ENSNVIG00000015264) #23	PI4KB (ENSNVIG00000015216)	RFX5 (ENSNVIG00000015158)	SELENBP1 (ENSNVIG00000015102)	PSMB4 (ENSNVIG00000015080)	POGZ (ENSNVIG00000014867)	ENSNVIG00000014806	TUFT1 (ENSNVIG00000014726) #31	SNX27 (ENSNVIG00000014632)	CELF3 (ENSNVIG00000014558)	RIIAD1 (ENSNVIG00000014540) #25	MRPL9 (ENSNVIG00000014498)	OAZ3 (ENSNVIG00000014414)	TDRKH (ENSNVIG00000014276)
Ferret	MODERN SPECIES	398	CERS2 (ENSMPUG00000004292)	ANXA9 (ENSMPUG00000004217)	MINDY1 (ENSMPUG00000004209)	PRUNE1 (ENSMPUG00000004205)	BNIPL (ENSMPUG00000004137)	C1orf56 (ENSMPUG00000004134)	MLLT11 (ENSMPUG00000018421)	GABPB2 (ENSMPUG00000004074)	SEMA6C (ENSMPUG00000004065)	TNFAIP8L2 (ENSMPUG00000004060)	LYSMD1 (ENSMPUG00000004055)	SCNM1 (ENSMPUG00000004051)	TMOD4 (ENSMPUG00000004039)	VPS72 (ENSMPUG00000004027)	PIP5K1A (ENSMPUG00000003887) #20	PSMD4 (ENSMPUG00000003810) #22	ZNF687 (ENSMPUG00000003797) #23	PI4KB (ENSMPUG00000003786)	RFX5 (ENSMPUG00000003735)	SELENBP1 (ENSMPUG00000003731)	PSMB4 (ENSMPUG00000003725)	POGZ (ENSMPUG00000003718)	ENSMPUG00000003710	ENSMPUG00000003701	TUFT1 (ENSMPUG00000003694) #31	SNX27 (ENSMPUG00000003631)	CELF3 (ENSMPUG00000003617)	RIIAD1 (ENSMPUG00000003602) #25	MRPL9 (ENSMPUG00000003590)	OAZ3 (ENSMPUG00000003571)	TDRKH (ENSMPUG00000003558)
Ursidae	DUPLICATION
Ursidae	ANCESTRAL SPECIES																	ENSGT00530000064050.o #22
Giant Panda	MODERN SPECIES	1358																ENSAMEG00000031473 #22
Ursidae	ANCESTRAL SPECIES		ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050.p #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
Ursus	ANCESTRAL SPECIES	18	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050.p #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244.bb	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
Polar bear	MODERN SPECIES	193	CERS2 (ENSUMAG00000003094)	ANXA9 (ENSUMAG00000003084)	MINDY1 (ENSUMAG00000003075)	PRUNE1 (ENSUMAG00000003066)	BNIPL (ENSUMAG00000003048)	C1orf56 (ENSUMAG00000003044)	CDC42SE1 (ENSUMAG00000003032)	MLLT11 (ENSUMAG00000003030)	GABPB2 (ENSUMAG00000003028)	SEMA6C (ENSUMAG00000002709)	LYSMD1 (ENSUMAG00000002659)	SCNM1 (ENSUMAG00000002656)	TMOD4 (ENSUMAG00000002565)	VPS72 (ENSUMAG00000002554)	PIP5K1A (ENSUMAG00000002546) #20	PSMD4 (ENSUMAG00000002533) #22	PI4KB (ENSUMAG00000002506)	RFX5 (ENSUMAG00000002497)	SELENBP1 (ENSUMAG00000002483)	PSMB4 (ENSUMAG00000002476)	POGZ (ENSUMAG00000002469)	ENSUMAG00000002267	TUFT1 (ENSUMAG00000002225) #31	SNX27 (ENSUMAG00000001910)	CELF3 (ENSUMAG00000001772)	RIIAD1 (ENSUMAG00000001735) #25	ENSUMAG00000001727	MRPL9 (ENSUMAG00000001723)	OAZ3 (ENSUMAG00000001672)	TDRKH (ENSUMAG00000001456)	LINGO4 (ENSUMAG00000001441)
American black bear	MODERN SPECIES	514			PRUNE1 (ENSUAMG00000027441)	BNIPL (ENSUAMG00000027434)	C1orf56 (ENSUAMG00000027431)	CDC42SE1 (ENSUAMG00000027427)	MLLT11 (ENSUAMG00000027424)	GABPB2 (ENSUAMG00000027414)	SEMA6C (ENSUAMG00000027310)	TNFAIP8L2 (ENSUAMG00000027309)	LYSMD1 (ENSUAMG00000027308)	SCNM1 (ENSUAMG00000027307)	TMOD4 (ENSUAMG00000027306)	VPS72 (ENSUAMG00000027305)	PIP5K1A (ENSUAMG00000027303) #20	PSMD4 (ENSUAMG00000027302) #22
Giant Panda	MODERN SPECIES	11	ANXA9 (ENSAMEG00000001101)	MINDY1 (ENSAMEG00000001070)	PRUNE1 (ENSAMEG00000001056)	BNIPL (ENSAMEG00000000980)	C1orf56 (ENSAMEG00000024447)	CDC42SE1 (ENSAMEG00000000978)	MLLT11 (ENSAMEG00000019143)	GABPB2 (ENSAMEG00000000961)	SEMA6C (ENSAMEG00000000929)	TNFAIP8L2 (ENSAMEG00000019127)	LYSMD1 (ENSAMEG00000000925)	SCNM1 (ENSAMEG00000000911)	TMOD4 (ENSAMEG00000000834)	VPS72 (ENSAMEG00000000824)	PIP5K1A (ENSAMEG00000000750) #20	PSMD4 (ENSAMEG00000000738) #22	ZNF687 (ENSAMEG00000000725) #23	PI4KB (ENSAMEG00000000708)	ENSAMEG00000019114	RFX5 (ENSAMEG00000000695)	SELENBP1 (ENSAMEG00000000659)	PSMB4 (ENSAMEG00000000645)	POGZ (ENSAMEG00000000622)	ENSAMEG00000000601	TUFT1 (ENSAMEG00000000574) #31	SNX27 (ENSAMEG00000000540)	CELF3 (ENSAMEG00000000509)	RIIAD1 (ENSAMEG00000029312) #25	ENSAMEG00000000491	OAZ3 (ENSAMEG00000000484)	TDRKH (ENSAMEG00000000421)
Canidae	ANCESTRAL SPECIES	18	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
Red fox	MODERN SPECIES	176	ANXA9 (ENSVVUG00000011665)	MINDY1 (ENSVVUG00000011699)	PRUNE1 (ENSVVUG00000011711)	BNIPL (ENSVVUG00000011719)	C1orf56 (ENSVVUG00000011731)	CDC42SE1 (ENSVVUG00000011739)	MLLT11 (ENSVVUG00000011750)	GABPB2 (ENSVVUG00000011753)	SEMA6C (ENSVVUG00000011791)	TNFAIP8L2 (ENSVVUG00000012677)	LYSMD1 (ENSVVUG00000012681)	SCNM1 (ENSVVUG00000012685)	TMOD4 (ENSVVUG00000012692)	VPS72 (ENSVVUG00000012757)	PIP5K1A (ENSVVUG00000012763) #20	PSMD4 (ENSVVUG00000012802) #22	ZNF687 (ENSVVUG00000012829) #23	PI4KB (ENSVVUG00000012847)	RFX5 (ENSVVUG00000012891)	SELENBP1 (ENSVVUG00000012909)	PSMB4 (ENSVVUG00000012921)	POGZ (ENSVVUG00000012927)	CGN (ENSVVUG00000012953)	ENSVVUG00000012977	TUFT1 (ENSVVUG00000012985) #31	ENSVVUG00000012997	SNX27 (ENSVVUG00000013003)	ENSVVUG00000013078	CELF3 (ENSVVUG00000013080)	ENSVVUG00000013083 #25	ENSVVUG00000013087
Canis_lupus	ANCESTRAL SPECIES	10	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281.o	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
Dog	DUPLICATION
Dog	MODERN SPECIES	8	CERS2 (ENSCAFG00845020459)	ANXA9 (ENSCAFG00845020549)	MINDY1 (ENSCAFG00845020685)	PRUNE1 (ENSCAFG00845020879)	BNIPL (ENSCAFG00845021092)	C1orf56 (ENSCAFG00845021195)	MLLT11 (ENSCAFG00845021250)	GABPB2 (ENSCAFG00845021379)	SEMA6C (ENSCAFG00845021515)	TNFAIP8L2 (ENSCAFG00845021939)	LYSMD1 (ENSCAFG00845021963)	SCNM1 (ENSCAFG00845022000)	TMOD4 (ENSCAFG00845022073)	VPS72 (ENSCAFG00845022136)	PIP5K1A (ENSCAFG00845022223) #20	PSMD4 (ENSCAFG00845022451) #22	ZNF687 (ENSCAFG00845022539) #23	PI4KB (ENSCAFG00845022692)	RFX5 (ENSCAFG00845023036)	SELENBP1 (ENSCAFG00845023139)	PSMB4 (ENSCAFG00845023296)	POGZ (ENSCAFG00845023413)	CGN (ENSCAFG00845023683)	TUFT1 (ENSCAFG00845023851) #31	SNX27 (ENSCAFG00845024124)	CELF3 (ENSCAFG00845024380)	RIIAD1 (ENSCAFG00845024568) #25	ENSCAFG00845024612	ENSCAFG00845024650	OAZ3 (ENSCAFG00845024748)	TDRKH (ENSCAFG00845024938)
Dog	MODERN SPECIES	5	ENSCAFG00845024069	IMPDH (ENSCAFG00845024195)	PRRT4 (ENSCAFG00845024597)	RBM28 (ENSCAFG00845024695)	LEP (ENSCAFG00845025165)	SND1 (ENSCAFG00845025303)	LRRC4 (ENSCAFG00845025632)	ENSCAFG00845025672	PAX4 (ENSCAFG00845025704)	FSCN3 (ENSCAFG00845025795)	ARF5 (ENSCAFG00845025859)	GCC1 (ENSCAFG00845025919)	ZNF800 (ENSCAFG00845025995)	GRM8 (ENSCAFG00845026262)	ENSCAFG00845005570	ENSCAFG00845005603 #22	ENSCAFG00845005618	POT1 (ENSCAFG00845005675)	GPR37 (ENSCAFG00845005725)	LSM3 (ENSCAFG00845005837)	SPAM1 (ENSCAFG00845005894)	HYAL4 (ENSCAFG00845005913)	ENSCAFG00845005941	WASL (ENSCAFG00845006059)	LMOD2 (ENSCAFG00845006144)	ENSCAFG00845006215	ENSCAFG00845006320	ENSCAFG00845006354	ENSCAFG00845006413	ENSCAFG00845006684	ELAPOR2 (ENSCAFG00845006853)
Dingo	DUPLICATION
Dingo	MODERN SPECIES	223	ANXA9 (ENSCAFG00020013531)	MINDY1 (ENSCAFG00020013527)	PRUNE1 (ENSCAFG00020013525)	BNIPL (ENSCAFG00020013521)	C1orf56 (ENSCAFG00020013517)	CDC42SE1 (ENSCAFG00020013513)	MLLT11 (ENSCAFG00020013511)	GABPB2 (ENSCAFG00020013493)	SEMA6C (ENSCAFG00020013490)	TNFAIP8L2 (ENSCAFG00020013486)	LYSMD1 (ENSCAFG00020013482)	SCNM1 (ENSCAFG00020013477)	TMOD4 (ENSCAFG00020013465)	ENSCAFG00020013463	PIP5K1A (ENSCAFG00020012928) #20	PSMD4 (ENSCAFG00020012911) #22	ZNF687 (ENSCAFG00020012909) #23	PI4KB (ENSCAFG00020012899)	RFX5 (ENSCAFG00020012884)	SELENBP1 (ENSCAFG00020012883)	PSMB4 (ENSCAFG00020012881)	POGZ (ENSCAFG00020010728)	ENSCAFG00020010534	TUFT1 (ENSCAFG00020010517) #31	SNX27 (ENSCAFG00020009876)	CELF3 (ENSCAFG00020009731)	RIIAD1 (ENSCAFG00020009697) #25	ENSCAFG00020009687	OAZ3 (ENSCAFG00020009650)	TDRKH (ENSCAFG00020009606)	LINGO4 (ENSCAFG00020009599)
Dingo	MODERN SPECIES	203	ENSCAFG00020021651	IMPDH1 (ENSCAFG00020021650)	PRRT4 (ENSCAFG00020021649)	RBM28 (ENSCAFG00020021648)	LEP (ENSCAFG00020021646)	LRRC4 (ENSCAFG00020021644)	ENSCAFG00020021642	SND1 (ENSCAFG00020021639)	PAX4 (ENSCAFG00020021633)	FSCN3 (ENSCAFG00020021630)	ARF5 (ENSCAFG00020021629)	GCC1 (ENSCAFG00020021628)	ZNF800 (ENSCAFG00020021627)	GRM8 (ENSCAFG00020021620)	ENSCAFG00020021614	ENSCAFG00020021604 #22	ENSCAFG00020021600	ENSCAFG00020021596	POT1 (ENSCAFG00020021591)	GPR37 (ENSCAFG00020021590)	ENSCAFG00020021584	ENSCAFG00020021583	TMEM229A (ENSCAFG00020021578)	SPAM1 (ENSCAFG00020021576)	HYAL4 (ENSCAFG00020021572)	ENSCAFG00020021567	WASL (ENSCAFG00020021561)	ENSCAFG00020021560	ASB15 (ENSCAFG00020021559)	ENSCAFG00020021556	ENSCAFG00020021555
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00580000082495	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364
Chiroptera	ANCESTRAL SPECIES	20	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00580000082495	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364
Megabat	MODERN SPECIES	1047				PRUNE1 (ENSPVAG00000011655)	BNIPL (ENSPVAG00000011656)	C1orf56 (ENSPVAG00000011657)	CDC42SE1 (ENSPVAG00000011658)	GABPB2 (ENSPVAG00000011659)	SEMA6C (ENSPVAG00000011661)	TNFAIP8L2 (ENSPVAG00000011662)	LYSMD1 (ENSPVAG00000011663)	SCNM1 (ENSPVAG00000011664)	TMOD4 (ENSPVAG00000011665)	VPS72 (ENSPVAG00000011668)	PIP5K1A (ENSPVAG00000011670) #20	PSMD4 (ENSPVAG00000011672) #22	ZNF687 (ENSPVAG00000011674) #23	PI4KB (ENSPVAG00000011677)	RFX5 (ENSPVAG00000011680)	SELENBP1 (ENSPVAG00000011681)	PSMB4 (ENSPVAG00000011682)	POGZ (ENSPVAG00000011683)
Microchiroptera	ANCESTRAL SPECIES	21	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00580000082495	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364
Microbat	MODERN SPECIES	1088	CERS2 (ENSMLUG00000010519)	ANXA9 (ENSMLUG00000010544)	ENSMLUG00000010567	PRUNE1 (ENSMLUG00000010581)	BNIPL (ENSMLUG00000010588)	C1orf56 (ENSMLUG00000023169)	MLLT11 (ENSMLUG00000027273)	GABPB2 (ENSMLUG00000002973)	SEMA6C (ENSMLUG00000002978)	ENSMLUG00000015143	LYSMD1 (ENSMLUG00000023399)	SCNM1 (ENSMLUG00000015145)	TMOD4 (ENSMLUG00000015148)	VPS72 (ENSMLUG00000015162)	PIP5K1A (ENSMLUG00000015171) #20	PSMD4 (ENSMLUG00000015186) #22	ZNF687 (ENSMLUG00000015198) #23	PI4KB (ENSMLUG00000015209)	RFX5 (ENSMLUG00000015218)	ENSMLUG00000015228	PSMB4 (ENSMLUG00000002149)	POGZ (ENSMLUG00000002157)	ENSMLUG00000002171	TUFT1 (ENSMLUG00000002177) #31	SNX27 (ENSMLUG00000002189)	CELF3 (ENSMLUG00000002193)	RIIAD1 (ENSMLUG00000029408) #25	MRPL9 (ENSMLUG00000002204)	OAZ3 (ENSMLUG00000002207)	TDRKH (ENSMLUG00000002213)	LINGO4 (ENSMLUG00000002233)
Greater horseshoe bat	MODERN SPECIES	14	ANXA9 (ENSRFEG00010021262)	MINDY1 (ENSRFEG00010021279)	PRUNE1 (ENSRFEG00010021296)	BNIPL (ENSRFEG00010021309)	C1orf56 (ENSRFEG00010021323)	ENSRFEG00010021328	MLLT11 (ENSRFEG00010021338)	GABPB2 (ENSRFEG00010021352)	SEMA6C (ENSRFEG00010021390)	TNFAIP8L2 (ENSRFEG00010021420)	LYSMD1 (ENSRFEG00010021428)	SCNM1 (ENSRFEG00010021441)	TMOD4 (ENSRFEG00010021448)	VPS72 (ENSRFEG00010021466)	PIP5K1A (ENSRFEG00010021499) #20	PSMD4 (ENSRFEG00010021531) #22	ENSRFEG00010021548	ZNF687 (ENSRFEG00010021559) #23	PI4KB (ENSRFEG00010021595)	RFX5 (ENSRFEG00010021649)	SELENBP1 (ENSRFEG00010021689)	PSMB4 (ENSRFEG00010021721)	POGZ (ENSRFEG00010021734)	ENSRFEG00010010693	TUFT1 (ENSRFEG00010010800) #31	SNX27 (ENSRFEG00010010910)	CELF3 (ENSRFEG00010011151)	RIIAD1 (ENSRFEG00010011257) #25	MRPL9 (ENSRFEG00010011321)	OAZ3 (ENSRFEG00010011457)	TDRKH (ENSRFEG00010011740)
Equus	ANCESTRAL SPECIES	3	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00860000134665	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503.e	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00580000082495	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244.eb	ENSGT00390000014244.db	ENSGT00390000000698	ENSGT00940000160649	ENSGT00390000004322.a.a.f	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281
Donkey	MODERN SPECIES	17	ANXA9 (ENSEASG00005002066)	MINDY1 (ENSEASG00005002074)	PRUNE1 (ENSEASG00005002076)	BNIPL (ENSEASG00005002080)	ENSEASG00005002085	ENSEASG00005027259	ENSEASG00005033916	GABPB2 (ENSEASG00005002094)	SEMA6C (ENSEASG00005002102)	TNFAIP8L2 (ENSEASG00005034798)	LYSMD1 (ENSEASG00005034347)	TMOD4 (ENSEASG00005002119)	ENSEASG00005002113	ENSEASG00005002121	PIP5K1A (ENSEASG00005002129) #20	PSMD4 (ENSEASG00005002140) #22	ZNF687 (ENSEASG00005033623) #23	PI4KB (ENSEASG00005002150)	RFX5 (ENSEASG00005038022)	ENSEASG00005028198	ENSEASG00005029161	ENSEASG00005002190	ENSEASG00005025062	ENSEASG00005024206	ENSEASG00005005615	POGZ (ENSEASG00005005607)	ENSEASG00005005594	ENSEASG00005005590	TUFT1 (ENSEASG00005005295) #31	SNX27 (ENSEASG00005005260)	CELF3 (ENSEASG00005005254)
Horse	MODERN SPECIES	26	CERS2 (ENSECAG00000018141)	MINDY1 (ENSECAG00000009096)	ANXA9 (ENSECAG00000014801)	PRUNE1 (ENSECAG00000000743)	C5H1orf56 (ENSECAG00000022044)	CDC42SE1 (ENSECAG00000052501)	MLLT11 (ENSECAG00000021503)	GABPB2 (ENSECAG00000014497)	SEMA6C (ENSECAG00000000588)	TNFAIP8L2 (ENSECAG00000007696)	TMOD4 (ENSECAG00000019026)	SCNM1 (ENSECAG00000023965)	VPS72 (ENSECAG00000017754)	PIP5K1A (ENSECAG00000008201) #20	ENSECAG00000048200	PSMD4 (ENSECAG00000028544) #22	ZNF687 (ENSECAG00000006072) #23	PI4KB (ENSECAG00000024994)	RFX5 (ENSECAG00000024774)	SELENBP1 (ENSECAG00000018012)	ENSECAG00000055030	PSMB4 (ENSECAG00000006692)	POGZ (ENSECAG00000021579)	ENSECAG00000039248	CGN (ENSECAG00000015048)	TUFT1 (ENSECAG00000011044) #31	SNX27 (ENSECAG00000000614)	CELF3 (ENSECAG00000020365)	MRPL9 (ENSECAG00000016263)	OAZ3 (ENSECAG00000015002)	TDRKH (ENSECAG00000013096)
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00530000064050 #22
Common shrew	MODERN SPECIES	4062																ENSSARG00000009427 #22
Hedgehog	MODERN SPECIES	5259																PSMD4 (ENSEEUG00000010473) #22
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00910000146771	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00580000082495	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00580000082495	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364
Tree shrew	MODERN SPECIES	3064													TMOD4 (ENSTBEG00000016525)	VPS72 (ENSTBEG00000016647)	PIP5K1A (ENSTBEG00000016758) #20	PSMD4 (ENSTBEG00000016911) #22
Glires	ANCESTRAL SPECIES		ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00580000082495	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364
Lagomorpha	ANCESTRAL SPECIES	1	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00580000082495	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364
Rabbit	MODERN SPECIES	4	ANXA9 (ENSOCUG00000014955)	MINDY1 (ENSOCUG00000004694)	PRUNE1 (ENSOCUG00000004699)	BNIPL (ENSOCUG00000004704)	C1orf56 (ENSOCUG00000004709)	CDC42SE1 (ENSOCUG00000024314)	MLLT11 (ENSOCUG00000004821)	GABPB2 (ENSOCUG00000004712)	SEMA6C (ENSOCUG00000002736)	TNFAIP8L2 (ENSOCUG00000004719)	LYSMD1 (ENSOCUG00000004722)	SCNM1 (ENSOCUG00000026766)	TMOD4 (ENSOCUG00000020919)	VPS72 (ENSOCUG00000021424)	PIP5K1A (ENSOCUG00000015242) #20	PSMD4 (ENSOCUG00000005143) #22	ENSOCUG00000035163	ZNF687 (ENSOCUG00000027462) #23	PI4KB (ENSOCUG00000002593)	RFX5 (ENSOCUG00000011564)	SELENBP1 (ENSOCUG00000003371)	PSMB4 (ENSOCUG00000015257)	POGZ (ENSOCUG00000004849)	CGN (ENSOCUG00000012640)	TUFT1 (ENSOCUG00000012659) #31	SNX27 (ENSOCUG00000007428)	CELF3 (ENSOCUG00000003551)	RIIAD1 (ENSOCUG00000021414) #25	ENSOCUG00000001383	OAZ3 (ENSOCUG00000001385)	ENSOCUG00000001387
Pika	MODERN SPECIES	1825				ANXA9 (ENSOPRG00000013947)	MINDY1 (ENSOPRG00000013968)	PRUNE1 (ENSOPRG00000013996)	BNIPL (ENSOPRG00000014023)	C1orf56 (ENSOPRG00000014044)	CDC42SE1 (ENSOPRG00000014053)	SEMA6C (ENSOPRG00000014058)	LYSMD1 (ENSOPRG00000014112)	SCNM1 (ENSOPRG00000014115)	TMOD4 (ENSOPRG00000014137)	VPS72 (ENSOPRG00000014150)	PIP5K1A (ENSOPRG00000014163) #20	PSMD4 (ENSOPRG00000014196) #22
Rodentia	ANCESTRAL SPECIES		ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
Rodentia_B	ANCESTRAL SPECIES		ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
Myomorpha	ANCESTRAL SPECIES	12	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
Muroidea	ANCESTRAL SPECIES	6	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
Murinae	ANCESTRAL SPECIES	5	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
Mus	ANCESTRAL SPECIES	7	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
Mus_A	ANCESTRAL SPECIES	9	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
Mus_B	ANCESTRAL SPECIES	8	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244.w	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
Mouse	MODERN SPECIES	12	Anxa9 (ENSMUSG00000015702)	Mindy1 (ENSMUSG00000038712)	Prune1 (ENSMUSG00000015711)	Bnipl (ENSMUSG00000028115)	Gm128 (ENSMUSG00000068860)	Cdc42se1 (ENSMUSG00000046722)	Mllt11 (ENSMUSG00000053192)	Gabpb2 (ENSMUSG00000038766)	Sema6c (ENSMUSG00000038777)	Tnfaip8l2 (ENSMUSG00000013707)	Lysmd1 (ENSMUSG00000053769)	Scnm1 (ENSMUSG00000092607)	Tmod4 (ENSMUSG00000005628)	Vps72 (ENSMUSG00000008958)	Pip5k1a (ENSMUSG00000028126) #20	Psmd4 (ENSMUSG00000005625) #22	Zfp687 (ENSMUSG00000019338) #23	Pi4kb (ENSMUSG00000038861)	Rfx5 (ENSMUSG00000005774)	Selenbp1 (ENSMUSG00000068874)	Psmb4 (ENSMUSG00000005779)	Pogz (ENSMUSG00000038902)	Cgn (ENSMUSG00000068876) #32	Selenbp2 (ENSMUSG00000068877)	Tuft1 (ENSMUSG00000005968) #31	Snx27 (ENSMUSG00000028136)	Celf3 (ENSMUSG00000028137)	Riiad1 (ENSMUSG00000028139) #25	Mrpl9 (ENSMUSG00000028140)	Oaz3 (ENSMUSG00000028141)	Tdrkh (ENSMUSG00000041912)
Mus_C	ANCESTRAL SPECIES	6	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244.w	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
spretus	MODERN SPECIES	12	Mindy1 (MGP_SPRETEiJ_G0026283)	Prune1 (MGP_SPRETEiJ_G0026282)	Bnipl (MGP_SPRETEiJ_G0026281)	Gm128 (MGP_SPRETEiJ_G0026280)	Cdc42se1 (MGP_SPRETEiJ_G0026279)	Mllt11 (MGP_SPRETEiJ_G0026278)	Gabpb2 (MGP_SPRETEiJ_G0026277)	Sema6c (MGP_SPRETEiJ_G0026276)	Tnfaip8l2 (MGP_SPRETEiJ_G0026275)	MGP_SPRETEiJ_G0026274	MGP_SPRETEiJ_G0026273	Scnm1 (MGP_SPRETEiJ_G0026272)	Tmod4 (MGP_SPRETEiJ_G0026271)	Vps72 (MGP_SPRETEiJ_G0026270)	Pip5k1a (MGP_SPRETEiJ_G0026269) #20	Psmd4 (MGP_SPRETEiJ_G0026268) #22	Zfp687 (MGP_SPRETEiJ_G0026267) #23	Pi4kb (MGP_SPRETEiJ_G0026266)	Rfx5 (MGP_SPRETEiJ_G0026265)	MGP_SPRETEiJ_G0026264	MGP_SPRETEiJ_G0026263	Psmb4 (MGP_SPRETEiJ_G0026262)	Pogz (MGP_SPRETEiJ_G0026261)	MGP_SPRETEiJ_G0026260	MGP_SPRETEiJ_G0026259	MGP_SPRETEiJ_G0026258 #31	Snx27 (MGP_SPRETEiJ_G0026257)	Celf3 (MGP_SPRETEiJ_G0026256)	Riiad1 (MGP_SPRETEiJ_G0026255) #25	Mrpl9 (MGP_SPRETEiJ_G0026254)	MGP_SPRETEiJ_G0026253
Steppe mouse	DUPLICATION
Steppe mouse	MODERN SPECIES	3111	Anxa9 (ENSMSIG00000005379)	Mindy1 (ENSMSIG00000005316)	Prune1 (ENSMSIG00000005284)	Bnipl (ENSMSIG00000005186)	Gm128 (ENSMSIG00000005144)	Cdc42se1 (ENSMSIG00000005109)	Mllt11 (ENSMSIG00000005094)	Gabpb2 (ENSMSIG00000005022)	Sema6c (ENSMSIG00000004785)	Tnfaip8l2 (ENSMSIG00000004763)	Lysmd1 (ENSMSIG00000004745)	Scnm1 (ENSMSIG00000004699)	Tmod4 (ENSMSIG00000004640)	ENSMSIG00000004624	Pip5k1a (ENSMSIG00000004412) #20	ENSMSIG00000004219 #22	Zfp687 (ENSMSIG00000004151) #23	Pi4kb (ENSMSIG00000003954)	Rfx5 (ENSMSIG00000003915)	Selenbp1 (ENSMSIG00000003823)	ENSMSIG00000003775	Pogz (ENSMSIG00000003258)	ENSMSIG00000003119	ENSMSIG00000003107	Tuft1 (ENSMSIG00000002980) #31	Snx27 (ENSMSIG00000002861)	Celf3 (ENSMSIG00000002457)	Riiad1 (ENSMSIG00000002405) #25	ENSMSIG00000002348	Oaz3 (ENSMSIG00000002162)	Tdrkh (ENSMSIG00000001794)
Steppe mouse	MODERN SPECIES	240															ENSMSIG00000005370	ENSMSIG00000005388 #22	Or52ab4 (ENSMSIG00000005400)	Or52ad1 (ENSMSIG00000005409)	Or52s19 (ENSMSIG00000005415)
Ryukyu mouse	MODERN SPECIES	12	Mindy1 (MGP_CAROLIEiJ_G0025339)	Prune1 (MGP_CAROLIEiJ_G0025338)	Bnipl (MGP_CAROLIEiJ_G0025337)	Gm128 (MGP_CAROLIEiJ_G0025336)	Cdc42se1 (MGP_CAROLIEiJ_G0025335)	Mllt11 (MGP_CAROLIEiJ_G0025334)	MGP_CAROLIEiJ_G0025333	Sema6c (MGP_CAROLIEiJ_G0025332)	Tnfaip8l2 (MGP_CAROLIEiJ_G0025331)	MGP_CAROLIEiJ_G0025330	MGP_CAROLIEiJ_G0025329	MGP_CAROLIEiJ_G0025328	Tmod4 (MGP_CAROLIEiJ_G0025327)	Vps72 (MGP_CAROLIEiJ_G0025326)	Pip5k1a (MGP_CAROLIEiJ_G0025325) #20	Psmd4 (MGP_CAROLIEiJ_G0025324) #22	Zfp687 (MGP_CAROLIEiJ_G0025323) #23	Pi4kb (MGP_CAROLIEiJ_G0025322)	Rfx5 (MGP_CAROLIEiJ_G0025321)	Psmb4 (MGP_CAROLIEiJ_G0025320)	Pogz (MGP_CAROLIEiJ_G0025319)	MGP_CAROLIEiJ_G0025318	MGP_CAROLIEiJ_G0025317	Tuft1 (MGP_CAROLIEiJ_G0025316) #31	Snx27 (MGP_CAROLIEiJ_G0025315)	Celf3 (MGP_CAROLIEiJ_G0025314)	Riiad1 (MGP_CAROLIEiJ_G0025313) #25	Mrpl9 (MGP_CAROLIEiJ_G0025312)	MGP_CAROLIEiJ_G0025311	Tdrkh (MGP_CAROLIEiJ_G0025310)	Lingo4 (MGP_CAROLIEiJ_G0025309)
Shrew mouse	MODERN SPECIES	17	Mindy1 (MGP_PahariEiJ_G0026783)	Prune1 (MGP_PahariEiJ_G0026782)	Bnipl (MGP_PahariEiJ_G0026781)	Gm128 (MGP_PahariEiJ_G0026780)	Cdc42se1 (MGP_PahariEiJ_G0026779)	Mllt11 (MGP_PahariEiJ_G0026778)	MGP_PahariEiJ_G0026777	Sema6c (MGP_PahariEiJ_G0026776)	Tnfaip8l2 (MGP_PahariEiJ_G0026775)	MGP_PahariEiJ_G0026774	MGP_PahariEiJ_G0026773	Scnm1 (MGP_PahariEiJ_G0026772)	Tmod4 (MGP_PahariEiJ_G0026771)	Vps72 (MGP_PahariEiJ_G0026770)	Pip5k1a (MGP_PahariEiJ_G0026769) #20	MGP_PahariEiJ_G0026768 #22	Zfp687 (MGP_PahariEiJ_G0026767) #23	Pi4kb (MGP_PahariEiJ_G0026766)	Rfx5 (MGP_PahariEiJ_G0026765)	MGP_PahariEiJ_G0026764	MGP_PahariEiJ_G0026763	Psmb4 (MGP_PahariEiJ_G0026762)	Pogz (MGP_PahariEiJ_G0026761)	MGP_PahariEiJ_G0026760	Tuft1 (MGP_PahariEiJ_G0026759) #31	Snx27 (MGP_PahariEiJ_G0026758)	Celf3 (MGP_PahariEiJ_G0026757)	MGP_PahariEiJ_G0026756 #25	Mrpl9 (MGP_PahariEiJ_G0026755)	MGP_PahariEiJ_G0026754	Tdrkh (MGP_PahariEiJ_G0026753)
Rat	MODERN SPECIES	11	Setdb1 (ENSRNOG00000021143)	Cers2 (ENSRNOG00000021138)	Anxa9 (ENSRNOG00000021134)	Mindy1 (ENSRNOG00000021131)	Prune1 (ENSRNOG00000021120)	Bnipl (ENSRNOG00000021116)	C2h1orf56 (ENSRNOG00000021656)	Gabpb2 (ENSRNOG00000021105)	Sema6c (ENSRNOG00000021101)	Tnfaip8l2 (ENSRNOG00000021100)	Lysmd1 (ENSRNOG00000021099)	Scnm1 (ENSRNOG00000021092)	Tmod4 (ENSRNOG00000021088)	Vps72 (ENSRNOG00000021081)	Pip5k1a (ENSRNOG00000021068) #20	Psmd4 (ENSRNOG00000021042) #22	Zfp687 (ENSRNOG00000021026) #23	Pi4kb (ENSRNOG00000021024)	Rfx5 (ENSRNOG00000021012)	Selenbp1 (ENSRNOG00000047158)	Psmb4 (ENSRNOG00000020979)	Pogz (ENSRNOG00000053599)	Ndufs5-ps2 (ENSRNOG00000029339)	Cgn (ENSRNOG00000020952)	Tuft1 (ENSRNOG00000020923) #31	AABR07072761.1 (ENSRNOG00000030494)	Snx27 (ENSRNOG00000020893)	Celf3 (ENSRNOG00000020875)	Riiad1 (ENSRNOG00000037310) #25	mrpl9 (ENSRNOG00000020869)	Oaz3 (ENSRNOG00000020863)
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
Cricetinae	ANCESTRAL SPECIES	12	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
Golden Hamster	MODERN SPECIES	782	Cers2 (ENSMAUG00000015178)	Anxa9 (ENSMAUG00000021724)	Mindy1 (ENSMAUG00000020108)	Prune1 (ENSMAUG00000000710)	Bnipl (ENSMAUG00000008535)	ENSMAUG00000014653	Cdc42se1 (ENSMAUG00000000575)	Mllt11 (ENSMAUG00000018228)	Gabpb2 (ENSMAUG00000015210)	Sema6c (ENSMAUG00000019207)	Tnfaip8l2 (ENSMAUG00000017288)	Lysmd1 (ENSMAUG00000019865)	Scnm1 (ENSMAUG00000021081)	Tmod4 (ENSMAUG00000016821)	Vps72 (ENSMAUG00000005849)	Psmd4 (ENSMAUG00000019832) #22	Zfp687 (ENSMAUG00000004550) #23	Pi4kb (ENSMAUG00000016696)	ENSMAUG00000018172	Psmb4 (ENSMAUG00000015230)	Pogz (ENSMAUG00000010135)
Chinese hamster chok1gshd	MODERN SPECIES	66	Anxa9 (ENSCGRG00001018214)	Mindy1 (ENSCGRG00001015953)	Prune1 (ENSCGRG00001013833)	Bnipl (ENSCGRG00001024336)	Gm128 (ENSCGRG00001021721)	Cdc42se1 (ENSCGRG00001000423)	Mllt11 (ENSCGRG00001003537)	Gabpb2 (ENSCGRG00001013536)	Sema6c (ENSCGRG00001003943)	Tnfaip8l2 (ENSCGRG00001010397)	Lysmd1 (ENSCGRG00001007524)	Scnm1 (ENSCGRG00001006323)	Tmod4 (ENSCGRG00001019854)	Vps72 (ENSCGRG00001017696)	Pip5k1a (ENSCGRG00001009588) #20	Psmd4 (ENSCGRG00001000134) #22	Zfp687 (ENSCGRG00001011676) #23	Pi4kb (ENSCGRG00001011634)	Rfx5 (ENSCGRG00001010883)	ENSCGRG00001008442	ENSCGRG00001019163	Psmb4 (ENSCGRG00001023085)	Pogz (ENSCGRG00001020717)	Cgn (ENSCGRG00001015582) #32	Tuft1 (ENSCGRG00001003288) #31	Snx27 (ENSCGRG00001019965)	Celf3 (ENSCGRG00001019777)	Riiad1 (ENSCGRG00001013628) #25	Mrpl9 (ENSCGRG00001017649)	Oaz3 (ENSCGRG00001022161)	ENSCGRG00001006583
Cricetidae_B	ANCESTRAL SPECIES	3	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
Prairie vole	MODERN SPECIES	8	Anxa9 (ENSMOCG00000000205)	Mindy1 (ENSMOCG00000021873)	Prune1 (ENSMOCG00000007764)	Bnipl (ENSMOCG00000013338)	Gm128 (ENSMOCG00000000577)	ENSMOCG00000018578	Mllt11 (ENSMOCG00000019439)	Gabpb2 (ENSMOCG00000020822)	Sema6c (ENSMOCG00000015540)	Tnfaip8l2 (ENSMOCG00000020387)	Lysmd1 (ENSMOCG00000006887)	Scnm1 (ENSMOCG00000008260)	Tmod4 (ENSMOCG00000012934)	Vps72 (ENSMOCG00000013004)	Pip5k1a (ENSMOCG00000004262) #20	Psmd4 (ENSMOCG00000022068) #22	ENSMOCG00000008474	ENSMOCG00000009209	Zfp687 (ENSMOCG00000017951) #23	Pi4kb (ENSMOCG00000007556)	ENSMOCG00000001232	ENSMOCG00000008106	Psmb4 (ENSMOCG00000007356)	Pogz (ENSMOCG00000019799)	ENSMOCG00000006627	Tuft1 (ENSMOCG00000015351) #31	Snx27 (ENSMOCG00000001014)	Celf3 (ENSMOCG00000001878)	Mrpl9 (ENSMOCG00000002992)	Oaz3 (ENSMOCG00000002831)	ENSMOCG00000002113
Northern American deer mouse	MODERN SPECIES	19	Anxa9 (ENSPEMG00000011713)	Mindy1 (ENSPEMG00000009924)	Prune1 (ENSPEMG00000028397)	Bnipl (ENSPEMG00000010539)	Gm128 (ENSPEMG00000024273)	Cdc42se1 (ENSPEMG00000029475)	Mllt11 (ENSPEMG00000030271)	Gabpb2 (ENSPEMG00000016588)	Sema6c (ENSPEMG00000024024)	Tnfaip8l2 (ENSPEMG00000017636)	Lysmd1 (ENSPEMG00000029321)	Scnm1 (ENSPEMG00000023042)	Tmod4 (ENSPEMG00000014116)	Vps72 (ENSPEMG00000002405)	Pip5k1a (ENSPEMG00000024056) #20	Psmd4 (ENSPEMG00000019041) #22	Zfp687 (ENSPEMG00000016093) #23	Pi4kb (ENSPEMG00000014565)	Rfx5 (ENSPEMG00000011280)	ENSPEMG00000009364	Psmb4 (ENSPEMG00000016780)	Pogz (ENSPEMG00000006538)	ENSPEMG00000015782	Tuft1 (ENSPEMG00000014366) #31	Snx27 (ENSPEMG00000009710)	Celf3 (ENSPEMG00000001184)	Riiad1 (ENSPEMG00000019003) #25	Mrpl9 (ENSPEMG00000011374)	Oaz3 (ENSPEMG00000008922)	Tdrkh (ENSPEMG00000011171)	Lingo4 (ENSPEMG00000002211)
Upper Galilee mountains blind mole rat	MODERN SPECIES	593	Anxa9 (ENSNGAG00000015153)	Mindy1 (ENSNGAG00000020364)	Prune1 (ENSNGAG00000019947)	Bnipl (ENSNGAG00000001458)	Gm128 (ENSNGAG00000015278)	Cdc42se1 (ENSNGAG00000010539)	Mllt11 (ENSNGAG00000002849)	ENSNGAG00000021741	Sema6c (ENSNGAG00000020194)	Tnfaip8l2 (ENSNGAG00000011818)	Lysmd1 (ENSNGAG00000007843)	Scnm1 (ENSNGAG00000005774)	Tmod4 (ENSNGAG00000002605)	Vps72 (ENSNGAG00000022821)	Pip5k1a (ENSNGAG00000001294) #20	Psmd4 (ENSNGAG00000001705) #22	Zfp687 (ENSNGAG00000017739) #23	Pi4kb (ENSNGAG00000000869)	Rfx5 (ENSNGAG00000015930)	ENSNGAG00000019466	Psmb4 (ENSNGAG00000014782)	Pogz (ENSNGAG00000006487)	ENSNGAG00000012043	Tuft1 (ENSNGAG00000016432) #31	Snx27 (ENSNGAG00000013411)	Celf3 (ENSNGAG00000021612)	Riiad1 (ENSNGAG00000017842) #25	Mrpl9 (ENSNGAG00000010578)	Oaz3 (ENSNGAG00000019961)	Tdrkh (ENSNGAG00000017825)	Lingo4 (ENSNGAG00000016843)
Lesser Egyptian jerboa	MODERN SPECIES	141	ENSJJAG00000024061	Cers2 (ENSJJAG00000018607)	Anxa9 (ENSJJAG00000000351)	Mindy1 (ENSJJAG00000019978)	Prune1 (ENSJJAG00000000407)	Bnipl (ENSJJAG00000008532)	Gm128 (ENSJJAG00000018318)	Cdc42se1 (ENSJJAG00000022380)	Mllt11 (ENSJJAG00000003830)	ENSJJAG00000021969	Sema6c (ENSJJAG00000017651)	Tnfaip8l2 (ENSJJAG00000002492)	ENSJJAG00000023316	Tmod4 (ENSJJAG00000018274)	Vps72 (ENSJJAG00000018920)	Psmd4 (ENSJJAG00000014800) #22	Zfp687 (ENSJJAG00000022366) #23	Pi4kb (ENSJJAG00000015064)	ENSJJAG00000023680	ENSJJAG00000006656	Psmb4 (ENSJJAG00000012721)	Pogz (ENSJJAG00000009420)	ENSJJAG00000003080	Tuft1 (ENSJJAG00000011616) #31	Snx27 (ENSJJAG00000023845)	Celf3 (ENSJJAG00000020104)	Riiad1 (ENSJJAG00000021268) #25	Mrpl9 (ENSJJAG00000018784)	Oaz3 (ENSJJAG00000006341)	Tdrkh (ENSJJAG00000000323)	Lingo4 (ENSJJAG00000017052)
Kangaroo rat	MODERN SPECIES	345	Anxa9 (ENSDORG00000009615)	Mindy1 (ENSDORG00000007366)	Prune1 (ENSDORG00000007367)	Bnipl (ENSDORG00000007368)	ENSDORG00000026052	Cdc42se1 (ENSDORG00000007370)	Mllt11 (ENSDORG00000030219)	Gabpb2 (ENSDORG00000005828)	Sema6c (ENSDORG00000015324)	Tnfaip8l2 (ENSDORG00000024206)	Lysmd1 (ENSDORG00000028528)	Scnm1 (ENSDORG00000010356)	Tmod4 (ENSDORG00000010358)	Vps72 (ENSDORG00000010360)	Pip5k1a (ENSDORG00000010363) #20	Psmd4 (ENSDORG00000004009) #22	Zfp687 (ENSDORG00000004010) #23	Pi4kb (ENSDORG00000004011)	ENSDORG00000015967	ENSDORG00000015968	Psmb4 (ENSDORG00000028831)	Pogz (ENSDORG00000025298)	ENSDORG00000007338	Tuft1 (ENSDORG00000026884) #31	Snx27 (ENSDORG00000014172)	Celf3 (ENSDORG00000002488)	Mrpl9 (ENSDORG00000015320)	Oaz3 (ENSDORG00000015321)	Tdrkh (ENSDORG00000015322)	Lingo4 (ENSDORG00000027587)	Rorc (ENSDORG00000015326)
Rodentia_A	ANCESTRAL SPECIES		ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364
Hystricomorpha	ANCESTRAL SPECIES	23	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
Hystricomorpha_a	ANCESTRAL SPECIES	59	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
Hystricomorpha_b	ANCESTRAL SPECIES	79	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
Degu	DUPLICATION
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	481															ENSODEG00000000017	ENSODEG00000000009 #22
Degu	MODERN SPECIES	238	GSK3A (ENSODEG00000014312)	ZNF526 (ENSODEG00000019954)	DEDD2 (ENSODEG00000010982)	POU2F2 (ENSODEG00000011310)	ZNF574 (ENSODEG00000013318)	GRIK5 (ENSODEG00000012165)	ATP1A3 (ENSODEG00000009220)	RABAC1 (ENSODEG00000008871)	ERFL (ENSODEG00000009283)	ARHGEF1 (ENSODEG00000009700)	CD79A (ENSODEG00000009588)	RPS19 (ENSODEG00000009249)	DMRTC2 (ENSODEG00000009170)	LYPD4 (ENSODEG00000009945)	ENSODEG00000009641	ENSODEG00000009652 #22	ENSODEG00000008792	LYPD3 (ENSODEG00000009353)	ENSODEG00000008595	ETHE1 (ENSODEG00000008887)	ZNF575 (ENSODEG00000008628)	XRCC1 (ENSODEG00000008863)	ENSODEG00000008737	IRGQ (ENSODEG00000009332)	ZNF428 (ENSODEG00000009041)	CADM4 (ENSODEG00000010861)	PLAUR (ENSODEG00000010245)	ENSODEG00000019696	IRGC (ENSODEG00000009791)	SMG9 (ENSODEG00000010484)	KCNN4 (ENSODEG00000008740)
Degu	MODERN SPECIES	89	MINDY1 (ENSODEG00000010980)	PRUNE1 (ENSODEG00000010818)	BNIPL (ENSODEG00000011106)	C1orf56 (ENSODEG00000010338)	CDC42SE1 (ENSODEG00000010472)	ENSODEG00000012396	GABPB2 (ENSODEG00000010710)	SEMA6C (ENSODEG00000011548)	TNFAIP8L2 (ENSODEG00000011478)	LYSMD1 (ENSODEG00000011246)	SCNM1 (ENSODEG00000013925)	TMOD4 (ENSODEG00000014977)	ENSODEG00000010899	PIP5K1A (ENSODEG00000011117) #20	ENSODEG00000019760	ENSODEG00000011837 #22	ZNF687 (ENSODEG00000010274) #23	PI4KB (ENSODEG00000009699)	RFX5 (ENSODEG00000010014)	SELENBP1 (ENSODEG00000009822)	ENSODEG00000011048	ENSODEG00000011806	ENSODEG00000012094	ENSODEG00000019751	POGZ (ENSODEG00000011206)	CGN (ENSODEG00000010397) #32	TUFT1 (ENSODEG00000012013) #31	ENSODEG00000019964	SNX27 (ENSODEG00000011216)	CELF3 (ENSODEG00000010505)	RIIAD1 (ENSODEG00000010181) #25
Degu	MODERN SPECIES	156	SSR3 (ENSODEG00000006236)	TIPARP (ENSODEG00000003454)	ENSODEG00000003611	CCNL1 (ENSODEG00000003645)	ENSODEG00000019034	ENSODEG00000003686	VEPH1 (ENSODEG00000003728)	PTX3 (ENSODEG00000003883) ##21	SHOX2 (ENSODEG00000003934)	RSRC1 (ENSODEG00000003974)	MLF1 (ENSODEG00000004264)	ENSODEG00000004275	GFM1 (ENSODEG00000004316)	LXN (ENSODEG00000004470)	RARRES1 (ENSODEG00000004496)	ENSODEG00000003386 #22	MFSD1 (ENSODEG00000003463)	ENSODEG00000003705	ENSODEG00000003766	ENSODEG00000003786	IQCJ (ENSODEG00000003870)	ENSODEG00000019016	ENSODEG00000004394	IL12A (ENSODEG00000004507)	C3orf80 (ENSODEG00000004587)	IFT80 (ENSODEG00000004647)	ENSODEG00000004792	SMC4 (ENSODEG00000004840)	TRIM59 (ENSODEG00000005290)	KPNA4 (ENSODEG00000005847)	ENSODEG00000019258
Long-tailed chinchilla	MODERN SPECIES	295	ANXA9 (ENSCLAG00000000291)	MINDY1 (ENSCLAG00000000123)	PRUNE1 (ENSCLAG00000000177)	BNIPL (ENSCLAG00000000367)	C1orf56 (ENSCLAG00000000381)	CDC42SE1 (ENSCLAG00000001637)	ENSCLAG00000001683	GABPB2 (ENSCLAG00000001712)	SEMA6C (ENSCLAG00000001760)	TNFAIP8L2 (ENSCLAG00000000171)	LYSMD1 (ENSCLAG00000000193)	TMOD4 (ENSCLAG00000000301)	SCNM1 (ENSCLAG00000000328)	VPS72 (ENSCLAG00000000394)	PIP5K1A (ENSCLAG00000000473) #20	PSMD4 (ENSCLAG00000000632) #22	ZNF687 (ENSCLAG00000000787) #23	PI4KB (ENSCLAG00000000227)	RFX5 (ENSCLAG00000000373)	SELENBP1 (ENSCLAG00000000456)
Guinea pig	MODERN SPECIES	2	ANXA9 (ENSCPOG00000001639)	MINDY1 (ENSCPOG00000001640)	PRUNE1 (ENSCPOG00000001641)	BNIPL (ENSCPOG00000026618)	C1orf56 (ENSCPOG00000025771)	CDC42SE1 (ENSCPOG00000036299)	MLLT11 (ENSCPOG00000036668)	GABPB2 (ENSCPOG00000011789)	SEMA6C (ENSCPOG00000002176)	TNFAIP8L2 (ENSCPOG00000034011)	LYSMD1 (ENSCPOG00000036409)	SCNM1 (ENSCPOG00000002184)	TMOD4 (ENSCPOG00000037550)	VPS72 (ENSCPOG00000019331)	PIP5K1A (ENSCPOG00000002193) #20	PSMD4 (ENSCPOG00000033777) #22	ZNF687 (ENSCPOG00000010631) #23	PI4KB (ENSCPOG00000010635)	RFX5 (ENSCPOG00000037830)	SELENBP1 (ENSCPOG00000025262)	PSMB4 (ENSCPOG00000015209)	POGZ (ENSCPOG00000015210)	CGN (ENSCPOG00000023121) #32	TUFT1 (ENSCPOG00000007866) #31	SNX27 (ENSCPOG00000007869)	CELF3 (ENSCPOG00000003539)	MRPL9 (ENSCPOG00000021168)	OAZ3 (ENSCPOG00000003550)	TDRKH (ENSCPOG00000003556)	LINGO4 (ENSCPOG00000003563)	RORC (ENSCPOG00000023600)
Naked mole-rat female	MODERN SPECIES	10	ENSHGLG00000012738	MINDY1 (ENSHGLG00000011645)	PRUNE1 (ENSHGLG00000009857)	BNIPL (ENSHGLG00000008894)	CDC42SE1 (ENSHGLG00000007587)	ENSHGLG00000006929	ENSHGLG00000033273	ENSHGLG00000005117	SEMA6C (ENSHGLG00000007351)	TNFAIP8L2 (ENSHGLG00000005573)	LYSMD1 (ENSHGLG00000005177)	SCNM1 (ENSHGLG00000005098)	TMOD4 (ENSHGLG00000010575)	VPS72 (ENSHGLG00000009189)	PIP5K1A (ENSHGLG00000009191) #20	PSMD4 (ENSHGLG00000015318) #22	ENSHGLG00000009054 #23	PI4KB (ENSHGLG00000006708)	RFX5 (ENSHGLG00000005034)	ENSHGLG00000036005	ENSHGLG00000050012	SELENBP1 (ENSHGLG00000017449)	PSMB4 (ENSHGLG00000011939)	POGZ (ENSHGLG00000008750)	ENSHGLG00000011542	TUFT1 (ENSHGLG00000014891) #31	SNX27 (ENSHGLG00000004841)	ENSHGLG00000006045	ENSHGLG00000041725	RIIAD1 (ENSHGLG00000009105) #25	MRPL9 (ENSHGLG00000044925)
Sciuridae	DUPLICATION
Sciuridae	ANCESTRAL SPECIES																	ENSGT00530000064050.y #22
Marmotini	ANCESTRAL SPECIES																	ENSGT00530000064050.y #22
Alpin marmot	MODERN SPECIES	391																ENSMMMG00000010169 #22
Sciuridae	ANCESTRAL SPECIES		ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895.i.a	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050.z #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364
Marmotini	ANCESTRAL SPECIES	33	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895.i.a	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050.z #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
Alpin marmot	MODERN SPECIES	85	ANXA9 (ENSMMMG00000019113)	MINDY1 (ENSMMMG00000019104)	PRUNE1 (ENSMMMG00000019091)	BNIPL (ENSMMMG00000019067)	C1orf56 (ENSMMMG00000019063)	CDC42SE1 (ENSMMMG00000019055)	ENSMMMG00000019054	GABPB2 (ENSMMMG00000019037)	SEMA6C (ENSMMMG00000018987)	TNFAIP8L2 (ENSMMMG00000018952)	LYSMD1 (ENSMMMG00000018943)	SCNM1 (ENSMMMG00000018931)	TMOD4 (ENSMMMG00000018917)	VPS72 (ENSMMMG00000018907)	PIP5K1A (ENSMMMG00000018855) #20	PSMD4 (ENSMMMG00000018846) #22	ZNF687 (ENSMMMG00000018839) #23	PI4KB (ENSMMMG00000018820)	RFX5 (ENSMMMG00000018801)	SELENBP1 (ENSMMMG00000018768)	PSMB4 (ENSMMMG00000018764)	POGZ (ENSMMMG00000018654)	ENSMMMG00000018638	TUFT1 (ENSMMMG00000018579) #31	SNX27 (ENSMMMG00000018570)	CELF3 (ENSMMMG00000018558)	ENSMMMG00000018501	OAZ3 (ENSMMMG00000018483)	TDRKH (ENSMMMG00000018437)	LINGO4 (ENSMMMG00000018432)	RORC (ENSMMMG00000018387)
Marmotini_b	ANCESTRAL SPECIES	77	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895.i.a	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050.z #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
Arctic ground squirrel	MODERN SPECIES	298	ANXA9 (ENSUPAG00010003775)	MINDY1 (ENSUPAG00010003812)	PRUNE1 (ENSUPAG00010003831)	BNIPL (ENSUPAG00010003858)	C1orf56 (ENSUPAG00010003917)	CDC42SE1 (ENSUPAG00010003923)	ENSUPAG00010003938	GABPB2 (ENSUPAG00010003948)	SEMA6C (ENSUPAG00010003983)	TNFAIP8L2 (ENSUPAG00010004011)	ENSUPAG00010004016	SCNM1 (ENSUPAG00010004024)	TMOD4 (ENSUPAG00010004052)	VPS72 (ENSUPAG00010004077)	PIP5K1A (ENSUPAG00010004093) #20	PSMD4 (ENSUPAG00010004155) #22	ZNF687 (ENSUPAG00010004178) #23	PI4KB (ENSUPAG00010004199)	RFX5 (ENSUPAG00010004282)	SELENBP1 (ENSUPAG00010004389)	PSMB4 (ENSUPAG00010004456)	POGZ (ENSUPAG00010004470)	ENSUPAG00010004578	TUFT1 (ENSUPAG00010004591) #31	SNX27 (ENSUPAG00010004681)	CELF3 (ENSUPAG00010004738)	RIIAD1 (ENSUPAG00010004783) #25	MRPL9 (ENSUPAG00010004792)	OAZ3 (ENSUPAG00010004801)	TDRKH (ENSUPAG00010004818)	LINGO4 (ENSUPAG00010004877)
Squirrel	MODERN SPECIES	180	ANXA9 (ENSSTOG00000006824)	MINDY1 (ENSSTOG00000006840)	PRUNE1 (ENSSTOG00000006879)	BNIPL (ENSSTOG00000006902)	ENSSTOG00000021284	CDC42SE1 (ENSSTOG00000032349)	ENSSTOG00000026549	SEMA6C (ENSSTOG00000000573)	GABPB2 (ENSSTOG00000000567)	TNFAIP8L2 (ENSSTOG00000000585)	LYSMD1 (ENSSTOG00000000588)	SCNM1 (ENSSTOG00000000590)	TMOD4 (ENSSTOG00000000592)	VPS72 (ENSSTOG00000025406)	PIP5K1A (ENSSTOG00000000599) #20	PSMD4 (ENSSTOG00000000605) #22	ZNF687 (ENSSTOG00000023367) #23	PI4KB (ENSSTOG00000013237)	RFX5 (ENSSTOG00000013246)	SELENBP1 (ENSSTOG00000027196)	PSMB4 (ENSSTOG00000012054)	POGZ (ENSSTOG00000012056)	ENSSTOG00000003867	TUFT1 (ENSSTOG00000003909) #31	SNX27 (ENSSTOG00000005289)	CELF3 (ENSSTOG00000022934)	RIIAD1 (ENSSTOG00000034652) #25	OAZ3 (ENSSTOG00000031407)	TDRKH (ENSSTOG00000006506)	LINGO4 (ENSSTOG00000015241)	RORC (ENSSTOG00000019386)
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES		MINDY1 (ENSSVLG00005001783)	ENSSVLG00005001812	BNIPL (ENSSVLG00005001858)	C1orf56 (ENSSVLG00005001885)	CDC42SE1 (ENSSVLG00005001905)	ENSSVLG00005001925	ENSSVLG00005001950	SEMA6C (ENSSVLG00005001999)	TNFAIP8L2 (ENSSVLG00005002031)	LYSMD1 (ENSSVLG00005002044)	SCNM1 (ENSSVLG00005002067)	TMOD4 (ENSSVLG00005002090)	VPS72 (ENSSVLG00005002112)	ENSSVLG00005002164 #20	ENSSVLG00005002315	PSMD4 (ENSSVLG00005002332) #22	ZNF687 (ENSSVLG00005002358) #23	PI4KB (ENSSVLG00005002410)	RFX5 (ENSSVLG00005002473)	SELENBP1 (ENSSVLG00005002503)	PSMB4 (ENSSVLG00005002561)	POGZ (ENSSVLG00005002594)	CGN (ENSSVLG00005002674) #32	TUFT1 (ENSSVLG00005002739) #31	SNX27 (ENSSVLG00005002849)	CELF3 (ENSSVLG00005002946)	RIIAD1 (ENSSVLG00005002999) #25	ENSSVLG00005003027	OAZ3 (ENSSVLG00005003077)	TDRKH (ENSSVLG00005003148)	LINGO4 (ENSSVLG00005003205)
Eurasian red squirrel	MODERN SPECIES	20												ENSSVLG00005013225	ENSSVLG00005013003	ENSSVLG00005012974	ENSSVLG00005012912	ENSSVLG00005012877 #22	ENSSVLG00005012776	ENSSVLG00005012658	ENSSVLG00005012589	ENSSVLG00005012563	ENSSVLG00005012467
Primates	ANCESTRAL SPECIES	7	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00910000146771	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00580000082495	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364
Lemuriformes	ANCESTRAL SPECIES	11	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892.rd	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364.d
Mouse lemur	MODERN SPECIES	11	SETDB1 (ENSMICG00000000425)	CERS2 (ENSMICG00000000441)	ANXA9 (ENSMICG00000000445)	MINDY1 (ENSMICG00000000449)	PRUNE1 (ENSMICG00000000451)	BNIPL (ENSMICG00000000460)	C1orf56 (ENSMICG00000000470)	CDC42SE1 (ENSMICG00000045944)	GABPB2 (ENSMICG00000006802)	SEMA6C (ENSMICG00000006866)	LYSMD1 (ENSMICG00000026636)	SCNM1 (ENSMICG00000047233)	TMOD4 (ENSMICG00000006822)	VPS72 (ENSMICG00000006827)	PIP5K1A (ENSMICG00000033339) #20	PSMD4 (ENSMICG00000016117) #22	ZNF687 (ENSMICG00000016128) #23	ENSMICG00000016139	RFX5 (ENSMICG00000038126)	SELENBP1 (ENSMICG00000016742)	PSMB4 (ENSMICG00000016746)	POGZ (ENSMICG00000016751)	ENSMICG00000016767	TUFT1 (ENSMICG00000016784) #31	SNX27 (ENSMICG00000028737)	CELF3 (ENSMICG00000010644)	RIIAD1 (ENSMICG00000033323) #25	MRPL9 (ENSMICG00000010669)	OAZ3 (ENSMICG00000010676)	ENSMICG00000010682	RORC (ENSMICG00000030874)
Lemuriformes_a	ANCESTRAL SPECIES	19	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892.rd	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364.d	ENSGT00940000162157
Coquerels sifaka	MODERN SPECIES	750	CTXND2 (ENSPCOG00000010066)	SETDB1 (ENSPCOG00000027869)	CERS2 (ENSPCOG00000020561)	ANXA9 (ENSPCOG00000019416)	PRUNE1 (ENSPCOG00000028302)	BNIPL (ENSPCOG00000014517)	C1orf56 (ENSPCOG00000004934)	CDC42SE1 (ENSPCOG00000015975)	GABPB2 (ENSPCOG00000024488)	SEMA6C (ENSPCOG00000023729)	LYSMD1 (ENSPCOG00000015497)	SCNM1 (ENSPCOG00000004493)	TMOD4 (ENSPCOG00000019379)	VPS72 (ENSPCOG00000028469)	PIP5K1A (ENSPCOG00000010811) #20	PSMD4 (ENSPCOG00000027248) #22	ENSPCOG00000013223	ZNF687 (ENSPCOG00000024950) #23	PI4KB (ENSPCOG00000026322)	RFX5 (ENSPCOG00000017800)	SELENBP1 (ENSPCOG00000015274)	ENSPCOG00000023754	POGZ (ENSPCOG00000016891)	CGN (ENSPCOG00000022079) #32	TUFT1 (ENSPCOG00000017274) #31	SNX27 (ENSPCOG00000024065)	CELF3 (ENSPCOG00000004694)	RIIAD1 (ENSPCOG00000019169) #25	MRPL9 (ENSPCOG00000006826)	OAZ3 (ENSPCOG00000006254)	TDRKH (ENSPCOG00000027505)
Greater bamboo lemur	MODERN SPECIES	1576										TNFAIP8L2 (ENSPSMG00000014162)	LYSMD1 (ENSPSMG00000014154)	SCNM1 (ENSPSMG00000014126)	TMOD4 (ENSPSMG00000014103)	VPS72 (ENSPSMG00000014080)	PIP5K1A (ENSPSMG00000013938) #20	PSMD4 (ENSPSMG00000013844) #22	ZNF687 (ENSPSMG00000013818) #23	PI4KB (ENSPSMG00000013792)	RFX5 (ENSPSMG00000013752)	SELENBP1 (ENSPSMG00000013638)
Bushbaby	MODERN SPECIES	289	ANXA9 (ENSOGAG00000010336)	MINDY1 (ENSOGAG00000010340)	PRUNE1 (ENSOGAG00000010345)	BNIPL (ENSOGAG00000010350)	C1orf56 (ENSOGAG00000032399)	CDC42SE1 (ENSOGAG00000010356)	MLLT11 (ENSOGAG00000034023)	GABPB2 (ENSOGAG00000010359)	SEMA6C (ENSOGAG00000010363)	TNFAIP8L2 (ENSOGAG00000002842)	LYSMD1 (ENSOGAG00000002844)	SCNM1 (ENSOGAG00000032806)	TMOD4 (ENSOGAG00000006400)	VPS72 (ENSOGAG00000006403)	PIP5K1A (ENSOGAG00000002846) #20	PSMD4 (ENSOGAG00000002851) #22	ZNF687 (ENSOGAG00000032200) #23	PI4KB (ENSOGAG00000008117)	RFX5 (ENSOGAG00000008120)	SELENBP1 (ENSOGAG00000008124)	PSMB4 (ENSOGAG00000004041)	POGZ (ENSOGAG00000008128)	ENSOGAG00000005174	TUFT1 (ENSOGAG00000005177) #31	ENSOGAG00000005184	CELF3 (ENSOGAG00000001830)	ENSOGAG00000030456	OAZ3 (ENSOGAG00000001836)	ENSOGAG00000001839	ENSOGAG00000032357	LINGO4 (ENSOGAG00000005085)
Haplorrhini	ANCESTRAL SPECIES	7	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00910000146771	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00580000082495	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364
Tarsier	MODERN SPECIES	6866										TNFAIP8L2 (ENSTSYG00000005726)	LYSMD1 (ENSTSYG00000005728)	SCNM1 (ENSTSYG00000028742)	TMOD4 (ENSTSYG00000029450)	VPS72 (ENSTSYG00000010186)	PIP5K1A (ENSTSYG00000005179) #20	PSMD4 (ENSTSYG00000002065) #22	ZNF687 (ENSTSYG00000033410) #23	PI4KB (ENSTSYG00000008035)	RFX5 (ENSTSYG00000027896)	ENSTSYG00000036980	SELENBP1 (ENSTSYG00000034359)	PSMB4 (ENSTSYG00000007969)	POGZ (ENSTSYG00000007973)
Simiiformes	ANCESTRAL SPECIES	8	ENSGT00390000014288	ENSGT00940000160112	ENSGT00910000146771	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703.e.b #20	ENSGT00580000082495.a	ENSGT00580000082495.b	ENSGT00940000154703.e.a #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
Catarrhini	DUPLICATION
Catarrhini	ANCESTRAL SPECIES	10	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00910000146771	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703.e.b #20	ENSGT00580000082495.b	ENSGT00530000064050.`b #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
Hominoidea	ANCESTRAL SPECIES	7	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00910000146771	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000173053	ENSGT00940000154703.e.b.a #20	ENSGT00530000064050.`b #22	ENSGT00580000082495.b	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364
Gibbon	MODERN SPECIES	2	PRUNE1 (ENSNLEG00000010057)	BNIPL (ENSNLEG00000010065)	ENSNLEG00000027334	C1orf56 (ENSNLEG00000010073)	CDC42SE1 (ENSNLEG00000031841)	ENSNLEG00000032141	MLLT11 (ENSNLEG00000030296)	GABPB2 (ENSNLEG00000033310)	SEMA6C (ENSNLEG00000010093)	TNFAIP8L2 (ENSNLEG00000035422)	LYSMD1 (ENSNLEG00000032888)	SCNM1 (ENSNLEG00000010123)	ENSNLEG00000010125	ENSNLEG00000028078	PIP5K1A (ENSNLEG00000028003) #20	PSMD4 (ENSNLEG00000010139) #22	ZNF687 (ENSNLEG00000010154) #23	PI4KB (ENSNLEG00000010164)	RFX5 (ENSNLEG00000034533)	SELENBP1 (ENSNLEG00000010183)	PSMB4 (ENSNLEG00000010200)	POGZ (ENSNLEG00000010214)	CGN (ENSNLEG00000010229) #32	ENSNLEG00000029006	TUFT1 (ENSNLEG00000010235) #31	SNX27 (ENSNLEG00000010249)	CELF3 (ENSNLEG00000010255)	ENSNLEG00000010271 #25	MRPL9 (ENSNLEG00000010275)	OAZ3 (ENSNLEG00000010280)	TDRKH (ENSNLEG00000010284)
Hominidae	ANCESTRAL SPECIES	6	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00910000146771	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703.e.b.a #20	ENSGT00530000064050.`b #22	ENSGT00580000082495.b	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	6	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00910000146771	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703.e.b.a #20	ENSGT00530000064050.`b #22	ENSGT00580000082495.b	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364
Gorilla	MODERN SPECIES		MINDY1 (ENSGGOG00000001534)	ENSGGOG00000039222	BNIPL (ENSGGOG00000008210)	C1orf56 (ENSGGOG00000023531)	CDC42SE1 (ENSGGOG00000008215)	ENSGGOG00000039380	MLLT11 (ENSGGOG00000040228)	GABPB2 (ENSGGOG00000001029)	SEMA6C (ENSGGOG00000022199)	TNFAIP8L2 (ENSGGOG00000014042)	LYSMD1 (ENSGGOG00000014046)	SCNM1 (ENSGGOG00000003357)	TMOD4 (ENSGGOG00000024182)	VPS72 (ENSGGOG00000036209)	ENSGGOG00000026599 #20	PSMD4 (ENSGGOG00000004062) #22	ENSGGOG00000042615	ZNF687 (ENSGGOG00000015144) #23	PI4KB (ENSGGOG00000015153)	RFX5 (ENSGGOG00000016795)	ENSGGOG00000039174	ENSGGOG00000010547	PSMB4 (ENSGGOG00000010559)	POGZ (ENSGGOG00000010569)	ENSGGOG00000007953	TUFT1 (ENSGGOG00000007971) #31	ENSGGOG00000026173	SNX27 (ENSGGOG00000034898)	ENSGGOG00000023049	CELF3 (ENSGGOG00000021973)	ENSGGOG00000003583 #25
Homo/Pan group	ANCESTRAL SPECIES	7	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00910000146771	ENSGT00860000134665	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703.e.b.a #20	ENSGT00530000064050.`b #22	ENSGT00580000082495.b	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364
Pan	ANCESTRAL SPECIES		ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00910000146771	ENSGT00860000134665	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703.e.b.a #20	ENSGT00530000064050.`b #22	ENSGT00580000082495.b	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364
Chimpanzee	MODERN SPECIES		MINDY1 (ENSPTRG00000001270)	PRUNE1 (ENSPTRG00000050821)	BNIPL (ENSPTRG00000001272)	C1H1orf56 (ENSPTRG00000001274)	CDC42SE1 (ENSPTRG00000023156)	ENSPTRG00000050883	ENSPTRG00000049844	GABPB2 (ENSPTRG00000001275)	SEMA6C (ENSPTRG00000001276)	TNFAIP8L2 (ENSPTRG00000001277)	LYSMD1 (ENSPTRG00000001278)	SCNM1 (ENSPTRG00000001279)	TMOD4 (ENSPTRG00000001280)	VPS72 (ENSPTRG00000001281)	PIP5K1A (ENSPTRG00000001282) #20	PSMD4 (ENSPTRG00000013893) #22	ENSPTRG00000045692	ZNF687 (ENSPTRG00000001284) #23	PI4KB (ENSPTRG00000001285)	RFX5 (ENSPTRG00000001286)	SELENBP1 (ENSPTRG00000001287)	PSMB4 (ENSPTRG00000001288)	POGZ (ENSPTRG00000001289)	CGN (ENSPTRG00000022663)	TUFT1 (ENSPTRG00000001291) #31	SNX27 (ENSPTRG00000001292)	CELF3 (ENSPTRG00000001293)	RIIAD1 (ENSPTRG00000001294) #25	MRPL9 (ENSPTRG00000001295)	OAZ3 (ENSPTRG00000001296)	TDRKH (ENSPTRG00000001297)
Bonobo	MODERN SPECIES		MINDY1 (ENSPPAG00000038839)	PRUNE1 (ENSPPAG00000033014)	ENSPPAG00000033368	C1orf56 (ENSPPAG00000031132)	CDC42SE1 (ENSPPAG00000036728)	ENSPPAG00000023077	ENSPPAG00000000610	GABPB2 (ENSPPAG00000012295)	SEMA6C (ENSPPAG00000038335)	TNFAIP8L2 (ENSPPAG00000021231)	LYSMD1 (ENSPPAG00000036493)	SCNM1 (ENSPPAG00000029574)	TMOD4 (ENSPPAG00000031353)	VPS72 (ENSPPAG00000037577)	PIP5K1A (ENSPPAG00000034350) #20	PSMD4 (ENSPPAG00000031524) #22	ENSPPAG00000027740	ZNF687 (ENSPPAG00000027876) #23	PI4KB (ENSPPAG00000035576)	RFX5 (ENSPPAG00000027460)	SELENBP1 (ENSPPAG00000043100)	PSMB4 (ENSPPAG00000029520)	POGZ (ENSPPAG00000029740)	ENSPPAG00000041669	TUFT1 (ENSPPAG00000038447) #31	SNX27 (ENSPPAG00000043259)	CELF3 (ENSPPAG00000038551)	ENSPPAG00000028387 #25	MRPL9 (ENSPPAG00000016172)	OAZ3 (ENSPPAG00000013394)	TDRKH (ENSPPAG00000028994)
Human	MODERN SPECIES		ANXA9 (ENSG00000143412)	MINDY1 (ENSG00000143409)	PRUNE1 (ENSG00000143363)	BNIPL (ENSG00000163141)	C1orf56 (ENSG00000143443)	CDC42SE1 (ENSG00000197622)	MLLT11 (ENSG00000213190)	GABPB2 (ENSG00000143458)	SEMA6C (ENSG00000143434)	TNFAIP8L2 (ENSG00000163154)	SCNM1 (ENSG00000163156)	LYSMD1 (ENSG00000163155)	TMOD4 (ENSG00000163157)	VPS72 (ENSG00000163159)	PIP5K1A (ENSG00000143398) #20	PSMD4 (ENSG00000159352) #22	ZNF687 (ENSG00000143373) #23	PI4KB (ENSG00000143393)	RFX5 (ENSG00000143390)	SELENBP1 (ENSG00000143416)	PSMB4 (ENSG00000159377)	POGZ (ENSG00000143442)	CGN (ENSG00000143375) #32	TUFT1 (ENSG00000143367) #31	SNX27 (ENSG00000143376)	CELF3 (ENSG00000159409)	RIIAD1 (ENSG00000178796) #25	MRPL9 (ENSG00000143436)	OAZ3 (ENSG00000143450)	TDRKH (ENSG00000182134)	LINGO4 (ENSG00000213171)
Orangutan	DUPLICATION
Orangutan	MODERN SPECIES		CERS2 (ENSPPYG00000000886)	ANXA9 (ENSPPYG00000000885)	MINDY1 (ENSPPYG00000000884)	PRUNE1 (ENSPPYG00000000883)	ENSPPYG00000000882	C1orf56 (ENSPPYG00000000881)	CDC42SE1 (ENSPPYG00000030734)	MLLT11 (ENSPPYG00000000879)	GABPB2 (ENSPPYG00000000878)	SEMA6C (ENSPPYG00000000877)	LYSMD1 (ENSPPYG00000036209)	ENSPPYG00000000874	TMOD4 (ENSPPYG00000034301)	VPS72 (ENSPPYG00000000873)	PIP5K1A (ENSPPYG00000000872) #20	PSMD4 (ENSPPYG00000000871) #22	ZNF687 (ENSPPYG00000000869) #23	PI4KB (ENSPPYG00000000868)	RFX5 (ENSPPYG00000000867)	SELENBP1 (ENSPPYG00000000866)	PSMB4 (ENSPPYG00000000865)	POGZ (ENSPPYG00000000864)	ENSPPYG00000000862	TUFT1 (ENSPPYG00000000861) #31	SNX27 (ENSPPYG00000000860)	CELF3 (ENSPPYG00000000859)	ENSPPYG00000000858 #25	MRPL9 (ENSPPYG00000000857)	OAZ3 (ENSPPYG00000000856)	TDRKH (ENSPPYG00000000855)	LINGO4 (ENSPPYG00000000854)
Orangutan	MODERN SPECIES	1	ENTPD1 (ENSPPYG00000002511)	TCTN3 (ENSPPYG00000002510)	ALDH18A1 (ENSPPYG00000002509)	ENSPPYG00000002508	PDLIM1 (ENSPPYG00000002507)	ACSM6 (ENSPPYG00000002506)	ENSPPYG00000035214	CYP2C8 (ENSPPYG00000002505)	CYP2C9 (ENSPPYG00000002503)	CYP2C19 (ENSPPYG00000002504)	ENSPPYG00000036087	HELLS (ENSPPYG00000002502)	TBC1D12 (ENSPPYG00000002501)	NOC3L (ENSPPYG00000002500)	PLCE1 (ENSPPYG00000002499)	ENSPPYG00000002498 #22	SLC35G1 (ENSPPYG00000002497)	LGI1 (ENSPPYG00000002496)	FRA10AC1 (ENSPPYG00000002495)	PDE6C (ENSPPYG00000002494)	RBP4 (ENSPPYG00000002493)	FFAR4 (ENSPPYG00000002492)	CEP55 (ENSPPYG00000002491)	MYOF (ENSPPYG00000002490)	ENSPPYG00000034054	CYP26A1 (ENSPPYG00000002489)	CYP26C1 (ENSPPYG00000002488)	EXOC6 (ENSPPYG00000002487)	HHEX (ENSPPYG00000002486)	ENSPPYG00000033680	KIF11 (ENSPPYG00000002484)
Cercopithecidae	ANCESTRAL SPECIES	22	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00910000146771	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703.e.b #20	ENSGT00530000064050.`b #22	ENSGT00580000082495.b	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00910000146771	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703.e.b #20	ENSGT00530000064050.`b #22	ENSGT00580000082495.b	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00910000146771	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703.e.b #20	ENSGT00530000064050.`b #22	ENSGT00580000082495.b	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364
Macaca	ANCESTRAL SPECIES		ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00910000146771	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703.e.b #20	ENSGT00530000064050.`b #22	ENSGT00580000082495.b	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364
Pig-tailed macaque	MODERN SPECIES	262	MINDY1 (ENSMNEG00000041868)	PRUNE1 (ENSMNEG00000030962)	BNIPL (ENSMNEG00000037149)	C1orf56 (ENSMNEG00000037405)	CDC42SE1 (ENSMNEG00000041697)	ENSMNEG00000033578	MLLT11 (ENSMNEG00000022771)	GABPB2 (ENSMNEG00000013770)	SEMA6C (ENSMNEG00000035534)	TNFAIP8L2 (ENSMNEG00000020572)	LYSMD1 (ENSMNEG00000029644)	SCNM1 (ENSMNEG00000026712)	TMOD4 (ENSMNEG00000041160)	VPS72 (ENSMNEG00000045564)	PIP5K1A (ENSMNEG00000015371) #20	PSMD4 (ENSMNEG00000042703) #22	ENSMNEG00000029378	ZNF687 (ENSMNEG00000034210) #23	PI4KB (ENSMNEG00000027393)	RFX5 (ENSMNEG00000036465)	SELENBP1 (ENSMNEG00000028510)	PSMB4 (ENSMNEG00000028484)	POGZ (ENSMNEG00000038332)	ENSMNEG00000029723	TUFT1 (ENSMNEG00000040638) #31	SNX27 (ENSMNEG00000033985)	CELF3 (ENSMNEG00000044120)	RIIAD1 (ENSMNEG00000033990) #25	MRPL9 (ENSMNEG00000020504)	OAZ3 (ENSMNEG00000043875)	TDRKH (ENSMNEG00000021524)
Macaca_a	ANCESTRAL SPECIES		ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00860000134665	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703.e.b #20	ENSGT00530000064050.`b #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
Crab-eating macaque	MODERN SPECIES		RPRD2 (ENSMFAG00000002559)	TARS2 (ENSMFAG00000030387)	ECM1 (ENSMFAG00000040115) #19	ADAMTSL4 (ENSMFAG00000002869)	MCL1 (ENSMFAG00000042545)	ENSA (ENSMFAG00000001523)	GOLPH3L (ENSMFAG00000042364)	HORMAD1 (ENSMFAG00000000795)	CTSS (ENSMFAG00000035464)	CTSK (ENSMFAG00000000402)	ARNT (ENSMFAG00000038379)	SETDB1 (ENSMFAG00000042328)	CERS2 (ENSMFAG00000038604)	ENSMFAG00000055601	PIP5K1A (ENSMFAG00000031399) #20	PSMD4 (ENSMFAG00000000623) #22	ZNF687 (ENSMFAG00000034438) #23	PI4KB (ENSMFAG00000004350)	RFX5 (ENSMFAG00000033452)	SELENBP1 (ENSMFAG00000033465)	PSMB4 (ENSMFAG00000033442)	ENSMFAG00000054881	POGZ (ENSMFAG00000043596)	ENSMFAG00000003431	TUFT1 (ENSMFAG00000034076) #31	SNX27 (ENSMFAG00000030490)	CELF3 (ENSMFAG00000040182)	RIIAD1 (ENSMFAG00000042291) #25	MRPL9 (ENSMFAG00000000874)	OAZ3 (ENSMFAG00000000682)	TDRKH (ENSMFAG00000041641)
Rhesus	MODERN SPECIES		ANXA9 (ENSMMUG00000023231)	MINDY1 (ENSMMUG00000010067)	PRUNE1 (ENSMMUG00000010068)	BNIPL (ENSMMUG00000010071)	C1H1orf56 (ENSMMUG00000010072)	CDC42SE1 (ENSMMUG00000010074)	MLLT11 (ENSMMUG00000010075)	GABPB2 (ENSMMUG00000008402)	SEMA6C (ENSMMUG00000007643)	TNFAIP8L2 (ENSMMUG00000007897)	LYSMD1 (ENSMMUG00000007898)	SCNM1 (ENSMMUG00000007900)	TMOD4 (ENSMMUG00000007903)	VPS72 (ENSMMUG00000007905)	PIP5K1A (ENSMMUG00000005228) #20	PSMD4 (ENSMMUG00000049004) #22	ZNF687 (ENSMMUG00000013166) #23	PI4KB (ENSMMUG00000013170)	RFX5 (ENSMMUG00000051126)	SELENBP1 (ENSMMUG00000045396)	PSMB4 (ENSMMUG00000020924)	POGZ (ENSMMUG00000020925)	CGN (ENSMMUG00000021259)	TUFT1 (ENSMMUG00000021260) #31	SNX27 (ENSMMUG00000016920)	CELF3 (ENSMMUG00000016952)	RIIAD1 (ENSMMUG00000016955) #25	MRPL9 (ENSMMUG00000009094)	OAZ3 (ENSMMUG00000009095)	TDRKH (ENSMMUG00000009096)	LINGO4 (ENSMMUG00000012137)
Cercopithecinae_b	ANCESTRAL SPECIES	3	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00910000146771	ENSGT00860000134665	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703.e.b #20	ENSGT00530000064050.`b #22	ENSGT00580000082495.b	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581
Cercopithecinae_d	ANCESTRAL SPECIES	29	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00910000146771	ENSGT00860000134665	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703.e.b #20	ENSGT00530000064050.`b #22	ENSGT00580000082495.b	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581
Drill	MODERN SPECIES	411	MINDY1 (ENSMLEG00000013546)	PRUNE1 (ENSMLEG00000039523)	BNIPL (ENSMLEG00000043110)	C1orf56 (ENSMLEG00000037789)	CDC42SE1 (ENSMLEG00000014068)	ENSMLEG00000027133	GABPB2 (ENSMLEG00000043912)	ENSMLEG00000033840	TNFAIP8L2 (ENSMLEG00000002703)	LYSMD1 (ENSMLEG00000036832)	SCNM1 (ENSMLEG00000018977)	TMOD4 (ENSMLEG00000044243)	VPS72 (ENSMLEG00000035130)	PIP5K1A (ENSMLEG00000032131) #20	ENSMLEG00000023637	PSMD4 (ENSMLEG00000032759) #22	ZNF687 (ENSMLEG00000024831) #23	ENSMLEG00000035649	RFX5 (ENSMLEG00000029900)	SELENBP1 (ENSMLEG00000043655)	PSMB4 (ENSMLEG00000020724)	POGZ (ENSMLEG00000031084)	ENSMLEG00000042702	TUFT1 (ENSMLEG00000036430) #31	SNX27 (ENSMLEG00000036793)	CELF3 (ENSMLEG00000028006)	RIIAD1 (ENSMLEG00000040504) #25	MRPL9 (ENSMLEG00000043239)	OAZ3 (ENSMLEG00000035369)	TDRKH (ENSMLEG00000033882)	LINGO4 (ENSMLEG00000000178)
Sooty mangabey	MODERN SPECIES	153	MINDY1 (ENSCATG00000038845)	PRUNE1 (ENSCATG00000044946)	BNIPL (ENSCATG00000040526)	C1orf56 (ENSCATG00000029971)	CDC42SE1 (ENSCATG00000032396)	ENSCATG00000038418	ENSCATG00000017037	GABPB2 (ENSCATG00000042751)	SEMA6C (ENSCATG00000042275)	TNFAIP8L2 (ENSCATG00000016739)	LYSMD1 (ENSCATG00000037386)	SCNM1 (ENSCATG00000042592)	TMOD4 (ENSCATG00000032370)	VPS72 (ENSCATG00000000907)	PIP5K1A (ENSCATG00000033456) #20	PSMD4 (ENSCATG00000030848) #22	ENSCATG00000040642	ZNF687 (ENSCATG00000000360) #23	PI4KB (ENSCATG00000039644)	RFX5 (ENSCATG00000041659)	SELENBP1 (ENSCATG00000040948)	PSMB4 (ENSCATG00000039167)	POGZ (ENSCATG00000024127)	CGN (ENSCATG00000031118) #32	TUFT1 (ENSCATG00000037719) #31	SNX27 (ENSCATG00000034009)	CELF3 (ENSCATG00000030846)	RIIAD1 (ENSCATG00000021062) #25	MRPL9 (ENSCATG00000043909)	OAZ3 (ENSCATG00000014157)	TDRKH (ENSCATG00000041878)
Olive baboon	MODERN SPECIES		SETDB1 (ENSPANG00000020214)	CERS2 (ENSPANG00000012293)	ANXA9 (ENSPANG00000012518)	MINDY1 (ENSPANG00000015350)	PRUNE1 (ENSPANG00000011008)	BNIPL (ENSPANG00000005713)	C1orf56 (ENSPANG00000012292)	CDC42SE1 (ENSPANG00000022420)	MLLT11 (ENSPANG00000035992)	GABPB2 (ENSPANG00000015567)	SEMA6C (ENSPANG00000021850)	LYSMD1 (ENSPANG00000008738)	TMOD4 (ENSPANG00000000635)	VPS72 (ENSPANG00000000636)	PIP5K1A (ENSPANG00000015349) #20	PSMD4 (ENSPANG00000010190) #22	ZNF687 (ENSPANG00000003115) #23	PI4KB (ENSPANG00000020399)	RFX5 (ENSPANG00000005712)	SELENBP1 (ENSPANG00000001762)	PSMB4 (ENSPANG00000023527)	POGZ (ENSPANG00000017623)	CGN (ENSPANG00000011379) #32	TUFT1 (ENSPANG00000003699) #31	SNX27 (ENSPANG00000020431)	CELF3 (ENSPANG00000023526)	RIIAD1 (ENSPANG00000015348) #25	MRPL9 (ENSPANG00000008737)	OAZ3 (ENSPANG00000011815)	TDRKH (ENSPANG00000001986)	LINGO4 (ENSPANG00000007807)
Rhinopithecus	ANCESTRAL SPECIES	23	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00860000134665	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703.e.b #20	ENSGT00530000064050.`b #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
Black snub-nosed monkey	MODERN SPECIES	590	CERS2 (ENSRBIG00000029589)	ANXA9 (ENSRBIG00000006699)	MINDY1 (ENSRBIG00000041946)	PRUNE1 (ENSRBIG00000041012)	BNIPL (ENSRBIG00000007306)	C1orf56 (ENSRBIG00000041763)	CDC42SE1 (ENSRBIG00000036252)	GABPB2 (ENSRBIG00000035367)	SEMA6C (ENSRBIG00000041675)	TNFAIP8L2 (ENSRBIG00000002148)	LYSMD1 (ENSRBIG00000043593)	SCNM1 (ENSRBIG00000020166)	TMOD4 (ENSRBIG00000035077)	VPS72 (ENSRBIG00000027963)	PIP5K1A (ENSRBIG00000040874) #20	PSMD4 (ENSRBIG00000031077) #22	ZNF687 (ENSRBIG00000028192) #23	PI4KB (ENSRBIG00000028426)	RFX5 (ENSRBIG00000033166)	SELENBP1 (ENSRBIG00000025453)	PSMB4 (ENSRBIG00000041329)	POGZ (ENSRBIG00000044811)	ENSRBIG00000017870	TUFT1 (ENSRBIG00000022910) #31	SNX27 (ENSRBIG00000043969)	CELF3 (ENSRBIG00000043205)	RIIAD1 (ENSRBIG00000036425) #25	MRPL9 (ENSRBIG00000036937)	OAZ3 (ENSRBIG00000032011)	TDRKH (ENSRBIG00000044860)	LINGO4 (ENSRBIG00000026745)
Golden snub-nosed monkey	MODERN SPECIES	2622	ANXA9 (ENSRROG00000032772)	MINDY1 (ENSRROG00000037195)	PRUNE1 (ENSRROG00000037584)	BNIPL (ENSRROG00000034530)	C1orf56 (ENSRROG00000027918)	CDC42SE1 (ENSRROG00000045185)	ENSRROG00000013259	GABPB2 (ENSRROG00000035884)	SEMA6C (ENSRROG00000044266)	TNFAIP8L2 (ENSRROG00000027193)	LYSMD1 (ENSRROG00000042467)	SCNM1 (ENSRROG00000038049)	TMOD4 (ENSRROG00000040162)	VPS72 (ENSRROG00000026948)	PIP5K1A (ENSRROG00000012959) #20	PSMD4 (ENSRROG00000044190) #22	ZNF687 (ENSRROG00000037226) #23	PI4KB (ENSRROG00000030947)	RFX5 (ENSRROG00000034529)	SELENBP1 (ENSRROG00000037330)	PSMB4 (ENSRROG00000029859)	POGZ (ENSRROG00000032667)	ENSRROG00000028411	TUFT1 (ENSRROG00000040599) #31	SNX27 (ENSRROG00000032485)	CELF3 (ENSRROG00000044979)	RIIAD1 (ENSRROG00000045557) #25	MRPL9 (ENSRROG00000031111)	OAZ3 (ENSRROG00000038133)	TDRKH (ENSRROG00000036923)	LINGO4 (ENSRROG00000011588)
Catarrhini	ANCESTRAL SPECIES	69																ENSGT00530000064050.ab #22	ENSGT00580000082495.a
Hominoidea	ANCESTRAL SPECIES	82																ENSGT00530000064050.ab #22	ENSGT00580000082495.a
Hominidae	ANCESTRAL SPECIES	80																ENSGT00530000064050.ab #22	ENSGT00580000082495.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	27	ENSGT00990000203615.b.a.a.a.b	ENSGT00910000147022	ENSGT00390000000582	ENSGT00390000011636	ENSGT01080000257365.b.a.b.a.a	ENSGT00940000157408	ENSGT00950000183064.b.f	ENSGT00910000148153	ENSGT00950000183064.b.e	ENSGT00940000154465.C.o	ENSGT00390000013771.u	ENSGT00730000111429	ENSGT00910000147159	ENSGT00390000002960	ENSGT00940000159985	ENSGT00530000064050.ab #22	ENSGT00580000082495.a.a	ENSGT00940000161312	ENSGT00550000074968	ENSGT00940000160495	ENSGT00390000016421.b.a	ENSGT00940000162541	ENSGT00940000166607.f	ENSGT00510000046499	ENSGT00390000014577.a.j	ENSGT00940000153577.A	ENSGT00940000159255	ENSGT00940000159602	ENSGT00940000159870	ENSGT00940000154497.A	ENSGT00490000044099
Homo/Pan group	ANCESTRAL SPECIES	26	ENSGT00990000203615.b.a.a.a.b	ENSGT00910000147022	ENSGT00390000000582	ENSGT00390000011636	ENSGT01080000257365.b.a.b.a.a	ENSGT00940000157408	ENSGT00950000183064.b.f	ENSGT00910000148153	ENSGT00950000183064.b.e	ENSGT00940000154465.C.o	ENSGT00390000013771.u	ENSGT00730000111429	ENSGT00910000147159	ENSGT00390000002960	ENSGT00940000159985	ENSGT00530000064050.ab #22	ENSGT00580000082495.a.a	ENSGT00940000161312	ENSGT00550000074968	ENSGT00940000160495	ENSGT00390000016421.b.a	ENSGT00940000162541	ENSGT00510000046499	ENSGT00390000014577.a.j	ENSGT00940000153577.A	ENSGT00940000159255	ENSGT00940000159602	ENSGT00940000159870	ENSGT00940000154497.A	ENSGT00490000044099	ENSGT00390000010669
Pan	ANCESTRAL SPECIES	27	ENSGT00940000160662	ENSGT00990000203615.b.a.a.a.b	ENSGT00910000147022	ENSGT00390000000582	ENSGT00390000011636	ENSGT01080000257365.b.a.b.a.a	ENSGT00940000157408	ENSGT00950000183064.b.f	ENSGT00910000148153	ENSGT00940000154465.C.o	ENSGT00390000013771.u	ENSGT00730000111429	ENSGT00910000147159	ENSGT00390000002960	ENSGT00940000159985	ENSGT00530000064050.ab #22	ENSGT00580000082495.a.a	ENSGT00940000161312	ENSGT00550000074968	ENSGT00940000160495	ENSGT00390000016421.b.a	ENSGT00940000162541	ENSGT00940000166607.f	ENSGT00510000046499	ENSGT00390000014577.a.j	ENSGT00940000153577.A	ENSGT00940000159255	ENSGT00940000159602	ENSGT00940000159870	ENSGT00940000154497.A	ENSGT00490000044099
Bonobo	MODERN SPECIES	12	ERG (ENSPPAG00000030567)	KCNJ15 (ENSPPAG00000032085)	ENSPPAG00000033288	ENSPPAG00000037211	ENSPPAG00000036930	KCNJ6 (ENSPPAG00000032498)	DYRK1A (ENSPPAG00000032422)	ENSPPAG00000029622	ENSPPAG00000032499	TTC3 (ENSPPAG00000006846)	PIGP (ENSPPAG00000034406)	RIPPLY3 (ENSPPAG00000034300)	ENSPPAG00000034271	HLCS (ENSPPAG00000033846)	ENSPPAG00000032977	ENSPPAG00000031314 #22	ENSPPAG00000030435	CLDN14 (ENSPPAG00000032950)	CHAF1B (ENSPPAG00000029854)	MORC3 (ENSPPAG00000028947)	DOP1B (ENSPPAG00000024601)	CBR3 (ENSPPAG00000014146)	ENSPPAG00000034490	ENSPPAG00000031255	CBR1 (ENSPPAG00000032317)	ENSPPAG00000037894	SETD4 (ENSPPAG00000040871)	RUNX1 (ENSPPAG00000003231)	ENSPPAG00000032673	ENSPPAG00000034144	KCNE1 (ENSPPAG00000015609)
Chimpanzee	MODERN SPECIES	12	ETS2 (ENSPTRG00000013908)	ERG (ENSPTRG00000013907)	KCNJ15 (ENSPTRG00000043267)	ENSPTRG00000052552	ENSPTRG00000013904	ENSPTRG00000013903	KCNJ6 (ENSPTRG00000004469)	DYRK1A (ENSPTRG00000013901)	VPS26C (ENSPTRG00000013900)	ENSPTRG00000048727	TTC3 (ENSPTRG00000013898)	PIGP (ENSPTRG00000013897)	RIPPLY3 (ENSPTRG00000013896)	HLCS (ENSPTRG00000013895)	SIM2 (ENSPTRG00000013894)	ENSPTRG00000048635 #22	ENSPTRG00000052426	CLDN14 (ENSPTRG00000013892)	CHAF1B (ENSPTRG00000013891)	MORC3 (ENSPTRG00000013890)	DOP1B (ENSPTRG00000013889)	CBR3 (ENSPTRG00000032586)	ENSPTRG00000049556	ENSPTRG00000011810	CBR1 (ENSPTRG00000013886)	ENSPTRG00000047714	SETD4 (ENSPTRG00000013884)	RUNX1 (ENSPTRG00000013883)	CLIC6 (ENSPTRG00000013882)	RCAN1 (ENSPTRG00000013881)	KCNE1 (ENSPTRG00000013880)
Gorilla	MODERN SPECIES	12	ETS2 (ENSGGOG00000015464)	ERG (ENSGGOG00000011391)	KCNJ15 (ENSGGOG00000038780)	ENSGGOG00000036523	ENSGGOG00000024462	ENSGGOG00000023530	KCNJ6 (ENSGGOG00000003812)	ENSGGOG00000011897	ENSGGOG00000001581	TTC3 (ENSGGOG00000011116)	PIGP (ENSGGOG00000010275)	RIPPLY3 (ENSGGOG00000038116)	HLCS (ENSGGOG00000011135)	SIM2 (ENSGGOG00000014943)	ENSGGOG00000025047	ENSGGOG00000038854 #22	CLDN14 (ENSGGOG00000014893)	CHAF1B (ENSGGOG00000015726)	MORC3 (ENSGGOG00000011974)	ENSGGOG00000024302	DOP1B (ENSGGOG00000003793)	CBR3 (ENSGGOG00000014349)	ENSGGOG00000040284	CBR1 (ENSGGOG00000002956)	SETD4 (ENSGGOG00000026619)	RUNX1 (ENSGGOG00000040263)	ENSGGOG00000041523	CLIC6 (ENSGGOG00000023723)	ENSGGOG00000040245	SMIM34 (ENSGGOG00000044203)	C21orf140 (ENSGGOG00000024658)
Gibbon	MODERN SPECIES	17	ETS2 (ENSNLEG00000004804)	ERG (ENSNLEG00000004758)	KCNJ15 (ENSNLEG00000033586)	ENSNLEG00000031686	ENSNLEG00000030342	KCNJ6 (ENSNLEG00000004741)	DYRK1A (ENSNLEG00000004733)	ENSNLEG00000004717	ENSNLEG00000032242	TTC3 (ENSNLEG00000004545)	PIGP (ENSNLEG00000004523)	ENSNLEG00000004521	ENSNLEG00000031839	HLCS (ENSNLEG00000004489)	ENSNLEG00000004481	ENSNLEG00000034915 #22	CLDN14 (ENSNLEG00000004475)	CHAF1B (ENSNLEG00000004429)	MORC3 (ENSNLEG00000004420)	DOP1B (ENSNLEG00000004382)	CBR3 (ENSNLEG00000004374)	ENSNLEG00000035603	CBR1 (ENSNLEG00000004363)	ENSNLEG00000033288	SETD4 (ENSNLEG00000004341)	RUNX1 (ENSNLEG00000004310)	ENSNLEG00000030048	KCNE1 (ENSNLEG00000032039)	SMIM34 (ENSNLEG00000004268)	C21orf140 (ENSNLEG00000018517)	ENSNLEG00000018516
Platyrrhini	DUPLICATION
Platyrrhini	DUPLICATION
Platyrrhini	ANCESTRAL SPECIES	12	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703.e.a #20	ENSGT00530000064050.bb.a #22	ENSGT00580000082495.b	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364
Cebidae	ANCESTRAL SPECIES	12	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703.e.a #20	ENSGT00530000064050.bb.a #22	ENSGT00580000082495.b	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364
Marmoset	MODERN SPECIES	9	ANXA9 (ENSCJAG00000007078)	MINDY1 (ENSCJAG00000007100)	PRUNE1 (ENSCJAG00000007107)	BNIPL (ENSCJAG00000007115)	C1orf56 (ENSCJAG00000007125)	CDC42SE1 (ENSCJAG00000041056)	MLLT11 (ENSCJAG00000043847)	GABPB2 (ENSCJAG00000007146)	SEMA6C (ENSCJAG00000007159)	TNFAIP8L2 (ENSCJAG00000046203)	LYSMD1 (ENSCJAG00000045898)	SCNM1 (ENSCJAG00000007277)	TMOD4 (ENSCJAG00000007296)	VPS72 (ENSCJAG00000070474)	ENSCJAG00000007344 #20	PSMD4 (ENSCJAG00000007357) #22	ENSCJAG00000066086	ZNF687 (ENSCJAG00000033395) #23	PI4KB (ENSCJAG00000007455)	RFX5 (ENSCJAG00000063255)	SELENBP1 (ENSCJAG00000007509)	PSMB4 (ENSCJAG00000074292)	POGZ (ENSCJAG00000007565)	ENSCJAG00000072484	ENSCJAG00000007659	TUFT1 (ENSCJAG00000007748) #31	SNX27 (ENSCJAG00000007791)	CELF3 (ENSCJAG00000007857)	RIIAD1 (ENSCJAG00000037171) #25	MRPL9 (ENSCJAG00000007926)	OAZ3 (ENSCJAG00000007939)
Cebidae_a	ANCESTRAL SPECIES	6	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00390000014288	ENSGT00940000160112	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703.e.a #20	ENSGT00530000064050.bb.a #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244	ENSGT00390000000698	ENSGT00940000160649	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000162157
Capuchin	DUPLICATION
Capuchin	DUPLICATION
Capuchin	MODERN SPECIES	188	CERS2 (ENSCCAG00000024890)	ANXA9 (ENSCCAG00000029485)	MINDY1 (ENSCCAG00000034264)	PRUNE1 (ENSCCAG00000032830)	BNIPL (ENSCCAG00000035594)	C1orf56 (ENSCCAG00000029248)	CDC42SE1 (ENSCCAG00000037855)	GABPB2 (ENSCCAG00000035213)	SEMA6C (ENSCCAG00000023670)	TNFAIP8L2 (ENSCCAG00000010675)	LYSMD1 (ENSCCAG00000000035)	SCNM1 (ENSCCAG00000034389)	TMOD4 (ENSCCAG00000031316)	VPS72 (ENSCCAG00000035387)	ENSCCAG00000028432 #20	ENSCCAG00000037432 #22	ZNF687 (ENSCCAG00000036501) #23	PI4KB (ENSCCAG00000031247)	RFX5 (ENSCCAG00000026282)	SELENBP1 (ENSCCAG00000022592)	PSMB4 (ENSCCAG00000027714)	ENSCCAG00000029212	POGZ (ENSCCAG00000026952)	CGN (ENSCCAG00000037078) #32	TUFT1 (ENSCCAG00000032389) #31	SNX27 (ENSCCAG00000030256)	CELF3 (ENSCCAG00000024686)	RIIAD1 (ENSCCAG00000032663) #25	ENSCCAG00000016289	MRPL9 (ENSCCAG00000021688)	OAZ3 (ENSCCAG00000036424)
Capuchin	MODERN SPECIES	251	ARFIP1 (ENSCCAG00000025148)	ENSCCAG00000028690	FHDC1 (ENSCCAG00000003243)	TRIM2 (ENSCCAG00000023128)	ENSCCAG00000024557	ENSCCAG00000033570	TMEM131L (ENSCCAG00000030421)	TLR2 (ENSCCAG00000035932)	RNF175 (ENSCCAG00000032466)	SFRP2 (ENSCCAG00000027729)	PLRG1 (ENSCCAG00000030259)	FGB (ENSCCAG00000018250)	ENSCCAG00000033876	FGG (ENSCCAG00000020729)	LRAT (ENSCCAG00000028075)	ENSCCAG00000005096 #22	ENSCCAG00000027619	ENSCCAG00000022596	NPY2R (ENSCCAG00000017441)	MAP9 (ENSCCAG00000032529)
Capuchin	MODERN SPECIES	1062															ENSCCAG00000020141	ENSCCAG00000029085 #22	ENSCCAG00000021233
Bolivian squirrel monkey	MODERN SPECIES	194	CERS2 (ENSSBOG00000033621)	ANXA9 (ENSSBOG00000017233)	MINDY1 (ENSSBOG00000035915)	PRUNE1 (ENSSBOG00000014294)	BNIPL (ENSSBOG00000029084)	C1orf56 (ENSSBOG00000025901)	CDC42SE1 (ENSSBOG00000035657)	GABPB2 (ENSSBOG00000029601)	SEMA6C (ENSSBOG00000024763)	TNFAIP8L2 (ENSSBOG00000004747)	LYSMD1 (ENSSBOG00000000350)	SCNM1 (ENSSBOG00000032405)	TMOD4 (ENSSBOG00000030865)	VPS72 (ENSSBOG00000033206)	ENSSBOG00000033201 #20	ENSSBOG00000027593 #22	ZNF687 (ENSSBOG00000036275) #23	PI4KB (ENSSBOG00000035602)	RFX5 (ENSSBOG00000022929)	SELENBP1 (ENSSBOG00000032709)	PSMB4 (ENSSBOG00000024792)	POGZ (ENSSBOG00000021437)	ENSSBOG00000030486	ENSSBOG00000004474	TUFT1 (ENSSBOG00000026491) #31	ENSSBOG00000013368	SNX27 (ENSSBOG00000030853)	CELF3 (ENSSBOG00000021984)	RIIAD1 (ENSSBOG00000035260) #25	MRPL9 (ENSSBOG00000018541)	OAZ3 (ENSSBOG00000028594)
Mas night monkey	MODERN SPECIES	784	ANXA9 (ENSANAG00000037268)	MINDY1 (ENSANAG00000035903)	PRUNE1 (ENSANAG00000023005)	ENSANAG00000029347	BNIPL (ENSANAG00000034658)	C1orf56 (ENSANAG00000033953)	CDC42SE1 (ENSANAG00000034234)	GABPB2 (ENSANAG00000033560)	SEMA6C (ENSANAG00000030841)	TNFAIP8L2 (ENSANAG00000013726)	ENSANAG00000027900	SCNM1 (ENSANAG00000021348)	TMOD4 (ENSANAG00000025034)	VPS72 (ENSANAG00000032435)	ENSANAG00000037109 #20	PSMD4 (ENSANAG00000023868) #22	ENSANAG00000029070	ZNF687 (ENSANAG00000025948) #23	PI4KB (ENSANAG00000025754)	RFX5 (ENSANAG00000029820)	SELENBP1 (ENSANAG00000035868)	PSMB4 (ENSANAG00000034196)	POGZ (ENSANAG00000028936)	CGN (ENSANAG00000028207) #32	TUFT1 (ENSANAG00000033115) #31	SNX27 (ENSANAG00000034302)	CELF3 (ENSANAG00000030590)	RIIAD1 (ENSANAG00000019415) #25	MRPL9 (ENSANAG00000022559)	OAZ3 (ENSANAG00000023949)	TDRKH (ENSANAG00000021663)
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00530000064050.bb.b #22
Cebidae	ANCESTRAL SPECIES																	ENSGT00530000064050.bb.b #22
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00530000064050.bb.b #22
Bolivian squirrel monkey	MODERN SPECIES	46	PHOSPHO2 (ENSSBOG00000019196)	ENSSBOG00000022335	KLHL23 (ENSSBOG00000034226)	ENSSBOG00000027204	ENSSBOG00000018367	ENSSBOG00000030085	UBR3 (ENSSBOG00000030227)	MYO3B (ENSSBOG00000021362)	SP5 (ENSSBOG00000021173)	ENSSBOG00000026107	GAD1 (ENSSBOG00000025342)	ENSSBOG00000031679	GORASP2 (ENSSBOG00000029025)	TLK1 (ENSSBOG00000030529)	ENSSBOG00000024638	ENSSBOG00000027578 #22	METTL8 (ENSSBOG00000029503)	DCAF17 (ENSSBOG00000029035)	CYBRD1 (ENSSBOG00000030691)	DYNC1I2 (ENSSBOG00000028159)	SLC25A12 (ENSSBOG00000021566)	ENSSBOG00000035650	HAT1 (ENSSBOG00000027379)	METAP1D (ENSSBOG00000030256)	DLX1 (ENSSBOG00000018939)	DLX2 (ENSSBOG00000028830)	ENSSBOG00000035010	ITGA6 (ENSSBOG00000032166)	PDK1 (ENSSBOG00000019615)	RAPGEF4 (ENSSBOG00000031049)	MAP3K20 (ENSSBOG00000023872)
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00530000064050.cb #22
Cebidae	ANCESTRAL SPECIES																	ENSGT00530000064050.cb #22
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00530000064050.cb #22
Capuchin	MODERN SPECIES	110			ENSCCAG00000032691	MYO3B (ENSCCAG00000034989)	ENSCCAG00000002061	SP5 (ENSCCAG00000026917)	ERICH2 (ENSCCAG00000023242)	GAD1 (ENSCCAG00000032148)	ENSCCAG00000035681	ENSCCAG00000026813	GORASP2 (ENSCCAG00000017764)	TLK1 (ENSCCAG00000035054)	ENSCCAG00000033852	ENSCCAG00000031201	METTL8 (ENSCCAG00000030997)	ENSCCAG00000035639 #22	DCAF17 (ENSCCAG00000025483)	CYBRD1 (ENSCCAG00000036782)	DYNC1I2 (ENSCCAG00000032503)	SLC25A12 (ENSCCAG00000029194)	HAT1 (ENSCCAG00000006420)	METAP1D (ENSCCAG00000030496)	DLX1 (ENSCCAG00000027463)	DLX2 (ENSCCAG00000023784)	ITGA6 (ENSCCAG00000022463)	PDK1 (ENSCCAG00000023566)	RAPGEF4 (ENSCCAG00000034923)	MAP3K20 (ENSCCAG00000029605)	ENSCCAG00000033554	SP3 (ENSCCAG00000024347)	OLA1 (ENSCCAG00000017844)
Sauria	ANCESTRAL SPECIES	28	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000154412.B.a	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00990000206813	ENSGT00530000064050 #22	ENSGT00960000189065	ENSGT00940000156524 #23	ENSGT00940000165572	ENSGT00550000074892	ENSGT00390000014244.kb	ENSGT00940000175972	ENSGT01050000244970.a	ENSGT00390000014244.jb.a	ENSGT00390000014244.jb.b	ENSGT00940000160649	ENSGT00390000000698	ENSGT00940000162698	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31	ENSGT00950000183212.C
Archelosauria	ANCESTRAL SPECIES	27	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000154412.B.a	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00990000206813	ENSGT00530000064050 #22	ENSGT00960000189065	ENSGT00940000156524 #23	ENSGT00940000165572	ENSGT00550000074892	ENSGT00390000014244.kb	ENSGT00940000175972	ENSGT01050000244970.a	ENSGT00390000014244.jb.a	ENSGT00390000014244.jb.b	ENSGT00940000160649	ENSGT00390000000698	ENSGT00940000162698	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31	ENSGT00950000183212.C
Cryptodira	ANCESTRAL SPECIES	20	ENSGT00940000157535	ENSGT01050000244814.a.a.b.b.b.a.b	ENSGT00390000011582	ENSGT00390000009272.r	ENSGT00550000075099	ENSGT00390000008714.a	ENSGT00940000156794	ENSGT00940000154412.B.a	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00960000189065	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT00940000175972	ENSGT01050000244970.a	ENSGT00390000014244.jb.b	ENSGT00940000160649	ENSGT00390000000698	ENSGT00940000162698	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281
Testudinoidea	ANCESTRAL SPECIES	17	ENSGT00940000157535	ENSGT01050000244814.a.a.b.b.b.a.b	ENSGT00390000011582	ENSGT00390000009272.r	ENSGT00550000075099	ENSGT00390000008714.a	ENSGT00940000156794	ENSGT00940000154412.B.a	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00960000189065	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244.jb.b	ENSGT00940000160649	ENSGT00390000000698	ENSGT00940000162698	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581
Emydidae	ANCESTRAL SPECIES	18	ENSGT00940000157535	ENSGT01050000244814.a.a.b.b.b.a.b	ENSGT00390000011582	ENSGT00390000009272.r	ENSGT00550000075099	ENSGT00390000008714.a	ENSGT00940000156794	ENSGT00940000154412.B.a	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00960000189065	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244.jb.b	ENSGT00940000160649	ENSGT00390000000698	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000003062 #25	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364
Three-toed box turtle	MODERN SPECIES	331	ENSTMTG00000004941	ENSTMTG00000004956	KLHDC9 (ENSTMTG00000004978)	PFDN2 (ENSTMTG00000004995)	NIT1 (ENSTMTG00000005009)	DEDD (ENSTMTG00000005027)	GABPB2 (ENSTMTG00000005046)	ENSTMTG00000005072	SEMA6C (ENSTMTG00000005138)	TNFAIP8L2 (ENSTMTG00000005765)	LYSMD1 (ENSTMTG00000005775)	SCNM1 (ENSTMTG00000005785)	TMOD4 (ENSTMTG00000005817)	VPS72 (ENSTMTG00000005843)	PIP5K1A (ENSTMTG00000005888) #20	PSMD4 (ENSTMTG00000005908) #22	ENSTMTG00000005918
painted turtle	MODERN SPECIES	738	ENSCPBG00000009137	ENSCPBG00000009117	KLHDC9 (ENSCPBG00000009108)	PFDN2 (ENSCPBG00000009101)	NIT1 (ENSCPBG00000009095)	DEDD (ENSCPBG00000009088)	GABPB2 (ENSCPBG00000009075)	ENSCPBG00000009063	SEMA6C (ENSCPBG00000009050)	TNFAIP8L2 (ENSCPBG00000009040)	LYSMD1 (ENSCPBG00000009036)	ENSCPBG00000009031	TMOD4 (ENSCPBG00000009027)	VPS72 (ENSCPBG00000009021)	PIP5K1A (ENSCPBG00000009007) #20	PSMD4 (ENSCPBG00000008993) #22	ENSCPBG00000008987	ZNF687 (ENSCPBG00000008978) #23	ENSCPBG00000008968	ENSCPBG00000008959	PI4KB (ENSCPBG00000008940)	RFX5 (ENSCPBG00000008934)	SELENBP1 (ENSCPBG00000008928)	POGZ (ENSCPBG00000008917)	PSMB4 (ENSCPBG00000008915)	CGN (ENSCPBG00000008913) #32	TUFT1 (ENSCPBG00000008907) #31	SNX27 (ENSCPBG00000008905)	CELF3 (ENSCPBG00000008870)	RIIAD1 (ENSCPBG00000008853) #25	MRPL9 (ENSCPBG00000008844)
Testudinidae	ANCESTRAL SPECIES	3	ENSGT00940000157535	ENSGT01050000244814.a.a.b.b.b.a.b	ENSGT00390000011582	ENSGT00390000009272.r	ENSGT00550000075099	ENSGT00390000008714.a	ENSGT00940000156794	ENSGT00940000154412.B.a	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00960000189065	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244.kb	ENSGT00390000014244.jb.b	ENSGT00940000160649	ENSGT00390000000698	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT01100000266092	ENSGT00390000008281	ENSGT00940000161581
Goode s thornscrub tortoise	MODERN SPECIES	16	ENSGEVG00005011800	ENSGEVG00005019330	KLHDC9 (ENSGEVG00005019304)	PFDN2 (ENSGEVG00005019297)	NIT1 (ENSGEVG00005019292)	DEDD (ENSGEVG00005019287)	GABPB2 (ENSGEVG00005019277)	ENSGEVG00005019268	SEMA6C (ENSGEVG00005019225)	TNFAIP8L2 (ENSGEVG00005019210)	LYSMD1 (ENSGEVG00005019208)	SCNM1 (ENSGEVG00005019198)	TMOD4 (ENSGEVG00005019187)	VPS72 (ENSGEVG00005019173)	PIP5K1A (ENSGEVG00005019142) #20	PSMD4 (ENSGEVG00005019123) #22	ENSGEVG00005019105	ZNF687 (ENSGEVG00005019089) #23	ENSGEVG00005019072	ENSGEVG00005019029	PI4KB (ENSGEVG00005018996)	ENSGEVG00005018980	RFX5 (ENSGEVG00005018953)	ENSGEVG00005018932	POGZ (ENSGEVG00005018900)	PSMB4 (ENSGEVG00005018880)	ENSGEVG00005018707	TUFT1 (ENSGEVG00005018632) #31	SNX27 (ENSGEVG00005018570)	CELF3 (ENSGEVG00005018512)	ENSGEVG00005018495
Abingdon island giant tortoise	MODERN SPECIES	793	ENSCABG00000010515	ENSCABG00000010513	KLHDC9 (ENSCABG00000010509)	PFDN2 (ENSCABG00000010506)	NIT1 (ENSCABG00000010505)	DEDD (ENSCABG00000010504)	GABPB2 (ENSCABG00000010502)	ENSCABG00000010501	SEMA6C (ENSCABG00000010500)	TNFAIP8L2 (ENSCABG00000010499)	LYSMD1 (ENSCABG00000010498)	SCNM1 (ENSCABG00000010492)	TMOD4 (ENSCABG00000010490)	VPS72 (ENSCABG00000010488)	PIP5K1A (ENSCABG00000010487) #20	PSMD4 (ENSCABG00000010484) #22	ENSCABG00000010482	ZNF687 (ENSCABG00000010481) #23	ENSCABG00000010480	ENSCABG00000010479	PI4KB (ENSCABG00000010478)	RFX5 (ENSCABG00000010477)
Chinese turtle	MODERN SPECIES	370	CCT3 (ENSPSIG00000015722)	ENSPSIG00000016401	ENSPSIG00000001047	ENSPSIG00000016408	KLHDC9 (ENSPSIG00000016412)	PFDN2 (ENSPSIG00000016446)	NIT1 (ENSPSIG00000016451)	DEDD (ENSPSIG00000016459)	GABPB2 (ENSPSIG00000016514)	SEMA6C (ENSPSIG00000016891)	LYSMD1 (ENSPSIG00000017474)	SCNM1 (ENSPSIG00000017506)	TMOD4 (ENSPSIG00000017512)	VPS72 (ENSPSIG00000017615)	PIP5K1A (ENSPSIG00000017638) #20	PSMD4 (ENSPSIG00000017944) #22	ZNF687 (ENSPSIG00000018021) #23	PI4KB (ENSPSIG00000018040)	ENSPSIG00000018070	ENSPSIG00000018073	SELENBP1 (ENSPSIG00000018079)	POGZ (ENSPSIG00000005621)	PSMB4 (ENSPSIG00000005631)	ENSPSIG00000005674	TUFT1 (ENSPSIG00000005697) #31	ANKRD35 (ENSPSIG00000005820)	RXFP4 (ENSPSIG00000005866)	ARHGEF2 (ENSPSIG00000005876)
Archosauria	ANCESTRAL SPECIES	36	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000154412.B.a	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00990000206813	ENSGT00530000064050 #22	ENSGT00960000189065	ENSGT00940000156524 #23	ENSGT00940000165572	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244.jb.a	ENSGT00390000014244.jb.b	ENSGT00940000160649	ENSGT00390000000698	ENSGT00940000162698	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000008281
Australian saltwater crocodile	MODERN SPECIES	25	CTSK (ENSCPRG00005004905)	ARNT (ENSCPRG00005005374)	SETDB1 (ENSCPRG00005007301)	ENSCPRG00005007482	ENSCPRG00005007485	GABPB2 (ENSCPRG00005007492)	ENSCPRG00005007502	SEMA6C (ENSCPRG00005007512)	ENSCPRG00005007522	TNFAIP8L2 (ENSCPRG00005007532)	LYSMD1 (ENSCPRG00005007534)	SCNM1 (ENSCPRG00005007538)	TMOD4 (ENSCPRG00005007544)	VPS72 (ENSCPRG00005007553)	PIP5K1A (ENSCPRG00005007576) #20	PSMD4 (ENSCPRG00005007726) #22	ENSCPRG00005008056	ZNF687 (ENSCPRG00005008064) #23	ENSCPRG00005008162	PI4KB (ENSCPRG00005008633)	ENSCPRG00005008640	ENSCPRG00005008653	RFX5 (ENSCPRG00005008655)	POGZ (ENSCPRG00005008659)	PSMB4 (ENSCPRG00005008664)	ENSCPRG00005008669
Aves	ANCESTRAL SPECIES	36	ENSGT00940000157471	ENSGT01030000234515.a.b.a.a	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00990000206813	ENSGT00530000064050 #22	ENSGT00960000189065	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244.jb.a.a	ENSGT00390000014244.jb.a.b	ENSGT00390000014244.jb.b	ENSGT00940000160649	ENSGT00390000000698	ENSGT00940000162698	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716	ENSGT00390000008281
Neognathae	ANCESTRAL SPECIES	36	ENSGT00940000157471	ENSGT01030000234515.a.b.a.a	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00990000206813	ENSGT00530000064050 #22	ENSGT00960000189065	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244.jb.a.a	ENSGT00390000014244.jb.a.b	ENSGT00390000014244.jb.b	ENSGT00940000160649	ENSGT00390000000698	ENSGT00940000162698	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716.g	ENSGT00390000008281
Galloanserae	ANCESTRAL SPECIES	36	ENSGT00940000157585	ENSGT01040000240780	ENSGT00940000157471	ENSGT01030000234515.a.b.a.a	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00960000189065	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244.jb.a.a	ENSGT00390000014244.jb.a.b	ENSGT00390000014244.jb.b	ENSGT00940000160649	ENSGT00390000000698	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716.g	ENSGT00390000008281	ENSGT00940000159364.q
Phasianidae	ANCESTRAL SPECIES	34	ENSGT00940000157585	ENSGT01040000240780	ENSGT00940000157471	ENSGT01030000234515.a.b.a.a	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00960000189065	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244.jb.a.a	ENSGT00390000014244.jb.a.b	ENSGT00390000014244.jb.b	ENSGT00940000160649	ENSGT00390000000698	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716.g	ENSGT00390000008281	ENSGT00940000159364.q
Phasianidae_b	ANCESTRAL SPECIES	31	ENSGT00940000157585	ENSGT01040000240780	ENSGT00940000157471	ENSGT01030000234515.a.b.a.a	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244.jb.a.a	ENSGT00390000014244.jb.a.b	ENSGT00390000014244.jb.b	ENSGT00940000160649	ENSGT00390000000698	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716.g	ENSGT00390000008281	ENSGT00940000159364.q	ENSGT00940000161521.c
Turkey	MODERN SPECIES	19		ENSMGAG00000001155	ENSMGAG00000001193	ENSMGAG00000001288 #31	CGN (ENSMGAG00000001250) #32	ENSMGAG00000001240	ENSMGAG00000021630	ENSMGAG00000019456	MLLT11 (ENSMGAG00000018150)	GABPB2 (ENSMGAG00000001113)	ENSMGAG00000018999	TMOD4 (ENSMGAG00000001123)	ENSMGAG00000001323	VPS72 (ENSMGAG00000001132)	PIP5K1A (ENSMGAG00000001167) #20	PSMD4 (ENSMGAG00000001020) #22	ENSMGAG00000020013	PI4KB (ENSMGAG00000001065)	RFX5 (ENSMGAG00000001126)	ENSMGAG00000001137	ENSMGAG00000022302	PRUNE1 (ENSMGAG00000006750)	MINDY1 (ENSMGAG00000001119)	SETDB1 (ENSMGAG00000001018)	ENSMGAG00000021970	ARNT (ENSMGAG00000000943)	CTSK (ENSMGAG00000016914)	CTSS (ENSMGAG00000000937)	ENSMGAG00000000928	ENSMGAG00000020744	ENSMGAG00000022369
Chicken	MODERN SPECIES	17	ARNT (ENSGALG00010028764)	ENSGALG00010028571	SETDB1 (ENSGALG00010028575)	CERS2 (ENSGALG00010028577)	PRUNE1 (ENSGALG00010028580)	MINDY1 (ENSGALG00010028585)	ENSGALG00010028590	MLLT11 (ENSGALG00010028782)	GABPB2 (ENSGALG00010028591)	SEMA6C (ENSGALG00010028592)	LYSMD1 (ENSGALG00010028594)	SCNM1 (ENSGALG00010028595)	TMOD4 (ENSGALG00010028598)	VPS72 (ENSGALG00010028599)	PIP5K1A (ENSGALG00010028871) #20	PSMD4 (ENSGALG00010028600) #22	ZNF687 (ENSGALG00010028602) #23	PI4KB (ENSGALG00010028604)	RFX5 (ENSGALG00010027397)	ENSGALG00010027407	ENSGALG00010028853	ENSGALG00010027418	SELENBP1 (ENSGALG00010027444)	POGZ (ENSGALG00010027983)	PSMB4 (ENSGALG00010027985)	CGN (ENSGALG00010027986) #32	TUFT1 (ENSGALG00010027994) #31	SNX27 (ENSGALG00010027998)	ENSGALG00010027999	MRPL9 (ENSGALG00010028000)	ENSGALG00010028004
Japanese quail	MODERN SPECIES	17	ENSCJPG00005015251	ENSCJPG00005015255	SETDB1 (ENSCJPG00005015256)	CERS2 (ENSCJPG00005015257)	MINDY1 (ENSCJPG00005015258)	PRUNE1 (ENSCJPG00005015259)	CDC42SE1 (ENSCJPG00005015260)	MLLT11 (ENSCJPG00005015261)	ENSCJPG00005015262	SEMA6C (ENSCJPG00005015263)	ENSCJPG00005015264	ENSCJPG00005015265	TMOD4 (ENSCJPG00005015266)	VPS72 (ENSCJPG00005015267)	PIP5K1A (ENSCJPG00005015268) #20	PSMD4 (ENSCJPG00005015269) #22	ENSCJPG00005015273	ZNF687 (ENSCJPG00005015276) #23	PI4KB (ENSCJPG00005015279)	RFX5 (ENSCJPG00005015281)	ENSCJPG00005015283	ENSCJPG00005015289	ENSCJPG00005015290	ENSCJPG00005015291	POGZ (ENSCJPG00005015292)	PSMB4 (ENSCJPG00005000058)	CGN (ENSCJPG00005000090) #32	TUFT1 (ENSCJPG00005000119) #31	SNX27 (ENSCJPG00005000271)	CELF3 (ENSCJPG00005000300)	MRPL9 (ENSCJPG00005000319)
Anatidae	ANCESTRAL SPECIES	76	ENSGT00940000155176	ENSGT00940000157759	ENSGT00940000157585	ENSGT00940000157471	ENSGT01030000234515.a.b.a.a	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00960000189065	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244.jb.a.a	ENSGT00390000014244.jb.a.b	ENSGT00390000014244.jb.b	ENSGT00940000160649	ENSGT00390000000698	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C
Pink-footed goose	MODERN SPECIES	365	CTSK (ENSABRG00000006853)	ARNT (ENSABRG00000006945)	SETDB1 (ENSABRG00000008426)	ENSABRG00000008437	CERS2 (ENSABRG00000008443)	MINDY1 (ENSABRG00000008453)	PRUNE1 (ENSABRG00000008460)	CDC42SE1 (ENSABRG00000008466)	MLLT11 (ENSABRG00000008478)	GABPB2 (ENSABRG00000008489)	SEMA6C (ENSABRG00000008508)	SCNM1 (ENSABRG00000008557)	TMOD4 (ENSABRG00000008719)	VPS72 (ENSABRG00000008724)	PIP5K1A (ENSABRG00000008738) #20	PSMD4 (ENSABRG00000008769) #22	ENSABRG00000008778	ZNF687 (ENSABRG00000008791) #23	PI4KB (ENSABRG00000008818)	RFX5 (ENSABRG00000008833)	ENSABRG00000008849	ENSABRG00000008858	ENSABRG00000008877	POGZ (ENSABRG00000008897)	PSMB4 (ENSABRG00000008915)	ENSABRG00000008934	TUFT1 (ENSABRG00000008966) #31	ENSABRG00000008988	SNX27 (ENSABRG00000009003)
Duck	MODERN SPECIES	2715																PSMD4 (ENSAPLG00000002002) #22	ENSAPLG00000018358
Neognathae_b	ANCESTRAL SPECIES	34	ENSGT00940000157471	ENSGT01030000234515.a.b.a.a	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734.g	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00990000206813	ENSGT00530000064050 #22	ENSGT00960000189065	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244.jb.a.a	ENSGT00390000014244.jb.a.b	ENSGT00390000014244.jb.b	ENSGT00940000160649	ENSGT00390000000698	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716.g	ENSGT00390000008281	ENSGT00940000159364.q
Neognathae_c	ANCESTRAL SPECIES	36	ENSGT00940000157471	ENSGT01030000234515.a.b.a.a	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000158641	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734.g	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00990000206813	ENSGT00530000064050 #22	ENSGT00960000189065	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244.jb.a.a	ENSGT00390000014244.jb.a.b	ENSGT00390000014244.jb.b	ENSGT00940000160649	ENSGT00390000000698	ENSGT00940000162698	ENSGT00950000183065.B #31	ENSGT00950000183212.C	ENSGT00940000154716.g	ENSGT00390000008281	ENSGT00940000159364.q
Golden eagle	MODERN SPECIES	25	SETDB1 (ENSACCG00020001501)	CERS2 (ENSACCG00020001469)	MINDY1 (ENSACCG00020001441)	PRUNE1 (ENSACCG00020001410)	BNIPL (ENSACCG00020001318)	CDC42SE1 (ENSACCG00020001273)	MLLT11 (ENSACCG00020001253)	GABPB2 (ENSACCG00020001233)	SEMA6C (ENSACCG00020001201)	LYSMD1 (ENSACCG00020001168)	SCNM1 (ENSACCG00020001155)	TMOD4 (ENSACCG00020001121)	VPS72 (ENSACCG00020001095)	PIP5K1A (ENSACCG00020001051) #20	ENSACCG00020001023	PSMD4 (ENSACCG00020001008) #22	ZNF687 (ENSACCG00020000991) #23	PI4KB (ENSACCG00020000950)	RFX5 (ENSACCG00020000902)	ENSACCG00020000875	ENSACCG00020000840	ENSACCG00020000813	ENSACCG00020000783	ENSACCG00020000748	POGZ (ENSACCG00020000714)	PSMB4 (ENSACCG00020000658)	ENSACCG00020000600	TUFT1 (ENSACCG00020000571) #31	SNX27 (ENSACCG00020000468)	CELF3 (ENSACCG00020000428)	MRPL9 (ENSACCG00020000392)
Kakapo	MODERN SPECIES	60	NCSTN (ENSSHBG00005000828)	NHLH1 (ENSSHBG00005000829)	VANGL2 (ENSSHBG00005000830)	ENSSHBG00005012980	ENSSHBG00005013204	ENSSHBG00005013215	ENSSHBG00005013256	MLLT11 (ENSSHBG00005013281)	GABPB2 (ENSSHBG00005013288)	SEMA6C (ENSSHBG00005013316)	LYSMD1 (ENSSHBG00005013585)	SCNM1 (ENSSHBG00005013593)	TMOD4 (ENSSHBG00005013606)	VPS72 (ENSSHBG00005013623)	PIP5K1A (ENSSHBG00005013649) #20	PSMD4 (ENSSHBG00005013904) #22	ENSSHBG00005013922	ZNF687 (ENSSHBG00005013943) #23	PI4KB (ENSSHBG00005013957)	RFX5 (ENSSHBG00005013966)	ENSSHBG00005013982	ENSSHBG00005014003	ENSSHBG00005014021	ENSSHBG00005014039	ENSSHBG00005014053	POGZ (ENSSHBG00005014068)	PSMB4 (ENSSHBG00005014076)	ENSSHBG00005014094	TUFT1 (ENSSHBG00005014124) #31	SNX27 (ENSSHBG00005014147)	CELF3 (ENSSHBG00005014178)
Passeriformes	ANCESTRAL SPECIES	58												ENSGT00390000010811	ENSGT00940000158734.g	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00960000189065	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244.jb.a.b	ENSGT00390000014244.jb.b	ENSGT00940000160649	ENSGT00390000000698	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31
Passeriformes_d	ANCESTRAL SPECIES	53												ENSGT00390000010811	ENSGT00940000158734.g	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00960000189065	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244.jb.a.b	ENSGT00390000014244.jb.b	ENSGT00940000160649	ENSGT00390000000698	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31
Flycatcher	MODERN SPECIES	422																ENSFALG00000028143 #22
Passeriformes_g	ANCESTRAL SPECIES	67											ENSGT00390000010811	ENSGT00940000158734.g	ENSGT00940000158734.h	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00960000189065	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244.jb.a.b	ENSGT00940000160649	ENSGT00390000000698	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31
Passeroidea	ANCESTRAL SPECIES	70											ENSGT00390000010811	ENSGT00940000158734.g	ENSGT00940000158734.h	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00960000189065	ENSGT00940000156524 #23	ENSGT00550000074892	ENSGT01050000244970.a	ENSGT00390000014244.jb.a.b	ENSGT00940000160649	ENSGT00390000000698	ENSGT00940000154489.B #32	ENSGT00950000183065.B #31
Common canary	MODERN SPECIES	248														ENSSCAG00000006712	PIP5K1A (ENSSCAG00000006702) #20	PSMD4 (ENSSCAG00000006696) #22	ENSSCAG00000006692	ZNF687 (ENSSCAG00000006335) #23	PI4KB (ENSSCAG00000006261)
Zebra finch	MODERN SPECIES	18	NHLH1 (ENSTGUG00000024935)	VANGL2 (ENSTGUG00000004396)	ENSTGUG00000020247	ENSTGUG00000027039	ENSTGUG00000019189	KIRREL1 (ENSTGUG00000018810)	ENSTGUG00000025392	ETV3 (ENSTGUG00000026543)	ARHGEF11 (ENSTGUG00000017366)	ENSTGUG00000025982	ENSTGUG00000019946	ENSTGUG00000017426	ENSTGUG00000023622	VPS72 (ENSTGUG00000022755)	PIP5K1A (ENSTGUG00000017381) #20	PSMD4 (ENSTGUG00000017424) #22	ENSTGUG00000029598	ZNF687 (ENSTGUG00000026923) #23	PI4KB (ENSTGUG00000017387)	ENSTGUG00000027939	ENSTGUG00000017392	ENSTGUG00000025306	ENSTGUG00000017390	POGZ (ENSTGUG00000017393)	PSMB4 (ENSTGUG00000017395)	ENSTGUG00000017398 #32	ENSTGUG00000026989 #31	ENSTGUG00000023654
Medium ground finch	MODERN SPECIES	492																PSMD4 (ENSGFOG00000005997) #22	PI4KB (ENSGFOG00000005976)
Lepidosauria	ANCESTRAL SPECIES	36	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000154412.B.a	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00960000189065	ENSGT00940000156524 #23	ENSGT00940000165572	ENSGT00550000074892	ENSGT00940000161136	ENSGT00390000006215 #19	ENSGT00940000159348.e	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038	ENSGT00390000018360	ENSGT00940000156893	ENSGT00390000002049.c.a	ENSGT00950000182907.a.a	ENSGT00530000063760.b
Episquamata	ANCESTRAL SPECIES	17	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000154412.B.a	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00960000189065	ENSGT00940000156524 #23	ENSGT00940000165572	ENSGT00550000074892	ENSGT00940000161136	ENSGT00390000006215 #19	ENSGT00940000159348.e	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038	ENSGT00390000018360	ENSGT00940000156893	ENSGT00390000002049.c.a	ENSGT00950000182907.a.a	ENSGT00530000063760.b
Laterata	ANCESTRAL SPECIES	35	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000154412.B.a	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00960000189065	ENSGT00940000156524 #23	ENSGT00940000165572	ENSGT00550000074892	ENSGT00940000161136	ENSGT00390000006215 #19	ENSGT00940000159348.e	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038	ENSGT00390000018360	ENSGT00940000156893	ENSGT00390000002049.c.a	ENSGT00950000182907.a.a	ENSGT00530000063760.b
Common wall lizard	MODERN SPECIES	7	MINDY1 (ENSPMRG00000021029)	PRUNE1 (ENSPMRG00000016487)	BNIPL (ENSPMRG00000016496)	CDC42SE1 (ENSPMRG00000016504)	MLLT11 (ENSPMRG00000016508)	GABPB2 (ENSPMRG00000016512)	ENSPMRG00000016518	SEMA6C (ENSPMRG00000016528)	ENSPMRG00000016544	TNFAIP8L2 (ENSPMRG00000016547)	LYSMD1 (ENSPMRG00000016550)	SCNM1 (ENSPMRG00000016554)	TMOD4 (ENSPMRG00000016561)	VPS72 (ENSPMRG00000016565)	PIP5K1A (ENSPMRG00000016574) #20	PSMD4 (ENSPMRG00000016603) #22	ENSPMRG00000016613	ZNF687 (ENSPMRG00000016622) #23	ENSPMRG00000016787	PI4KB (ENSPMRG00000017725)	ENSPMRG00000017740	ENSPMRG00000017746	ENSPMRG00000017753	ENSPMRG00000017762	ENSPMRG00000017779	ENSPMRG00000017780	ECM1 (ENSPMRG00000017782) #19	ENSPMRG00000017793	RPRD2 (ENSPMRG00000017803)	ENSPMRG00000017810	ENSPMRG00000017813
Argentine black and white tegu	MODERN SPECIES	78	ATL3 (ENSSMRG00000010118)	ENSSMRG00000010117	ENSSMRG00000010115	ENSSMRG00000010113	OR6N2 (ENSSMRG00000010112)	CADM3 (ENSSMRG00000010111)	ENSSMRG00000010110	ENSSMRG00000010109 #21	ENSSMRG00000010108	TNFAIP8L2 (ENSSMRG00000010107)	LYSMD1 (ENSSMRG00000010106)	SCNM1 (ENSSMRG00000010104)	TMOD4 (ENSSMRG00000010101)	VPS72 (ENSSMRG00000010100)	PIP5K1A (ENSSMRG00000010099) #20	PSMD4 (ENSSMRG00000010098) #22	ZNF687 (ENSSMRG00000010095) #23	ENSSMRG00000010092	PI4KB (ENSSMRG00000010084)	ADAMTSL4 (ENSSMRG00000010079)	ECM1 (ENSSMRG00000010077) #19	ENSSMRG00000008037	RPRD2 (ENSSMRG00000008019)	PRPF3 (ENSSMRG00000008016)	MRPS21 (ENSSMRG00000008015)	CIART (ENSSMRG00000008013)	CA14 (ENSSMRG00000007920)	APH1A (ENSSMRG00000007917)	ANP32E (ENSSMRG00000007909)	PLEKHO1 (ENSSMRG00000007902)	VPS45 (ENSSMRG00000007898)
Toxicofera	ANCESTRAL SPECIES	27	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000154412.B.a	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00940000165572	ENSGT00550000074892	ENSGT00940000161136	ENSGT00390000006215 #19	ENSGT00940000159348.e	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038	ENSGT00390000018360	ENSGT00940000156893	ENSGT00390000002049.c.a	ENSGT00950000182907.a.a	ENSGT00530000063760.b	ENSGT00550000075028
Elapidae	ANCESTRAL SPECIES	25	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000154412.B.a	ENSGT00940000158641	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00940000165572	ENSGT00550000074892	ENSGT00940000161136	ENSGT00390000006215 #19	ENSGT00940000159348.e	ENSGT00950000183094.a	ENSGT00940000159412	ENSGT00940000154225.a	ENSGT00940000160437	ENSGT00940000164926	ENSGT00390000009042	ENSGT00940000157485	ENSGT00940000167106	ENSGT00940000153558.a
Elapidae_a	ANCESTRAL SPECIES	51	ENSGT00940000161835	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000161723	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000154412.B.a	ENSGT00940000158641.f	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00940000161136	ENSGT00390000006215 #19	ENSGT00940000159348.e	ENSGT00950000183094.a	ENSGT00940000159412	ENSGT00940000154225.a	ENSGT00940000160437	ENSGT00940000164926	ENSGT00390000009042	ENSGT00940000157485	ENSGT00940000167106	ENSGT00940000153558.a	ENSGT00940000157619	ENSGT00940000159724
Acanthophiinae	ANCESTRAL SPECIES	51	ENSGT00940000155176	ENSGT00940000157759	ENSGT00940000157585	ENSGT00940000161723	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000156794	ENSGT00940000154412.B.a	ENSGT00940000158641.f	ENSGT00390000003488.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703 #20	ENSGT00530000064050 #22	ENSGT00940000156524 #23	ENSGT00940000161136	ENSGT00390000006215 #19	ENSGT00940000159348.e	ENSGT00950000183094.a	ENSGT00940000159412	ENSGT00940000154225.a	ENSGT00940000160437	ENSGT00940000164926	ENSGT00390000009042	ENSGT00940000157485	ENSGT00940000167106	ENSGT00940000153558.a	ENSGT00940000157619	ENSGT00940000159724
Mainland tiger snake	MODERN SPECIES	271				ENSNSUG00000004234	PRUNE1 (ENSNSUG00000004237)	BNIPL (ENSNSUG00000004588)	CDC42SE1 (ENSNSUG00000004713)	ENSNSUG00000004714	SEMA6C (ENSNSUG00000004724)	TNFAIP8L2 (ENSNSUG00000004784)	LYSMD1 (ENSNSUG00000004785)	SCNM1 (ENSNSUG00000004787)	TMOD4 (ENSNSUG00000004788)	VPS72 (ENSNSUG00000004804)	PIP5K1A (ENSNSUG00000004806) #20	PSMD4 (ENSNSUG00000004814) #22	ZNF687 (ENSNSUG00000004816) #23	ADAMTSL4 (ENSNSUG00000004821)	ENSNSUG00000004825 #19	ENSNSUG00000004839	ENSNSUG00000006626	NTRK1 (ENSNSUG00000006627)	PEAR1 (ENSNSUG00000006628)	INSRR (ENSNSUG00000006629)	ENSNSUG00000006902	ENSNSUG00000006903	HDGF (ENSNSUG00000006904)	ENSNSUG00000006905	ENSNSUG00000006906	CRABP2 (ENSNSUG00000006908)	ISG20L2 (ENSNSUG00000006909)
Eastern brown snake	MODERN SPECIES	133	ENSPTXG00000013390	ENSPTXG00000013391	MCL1 (ENSPTXG00000013392)	GOLPH3L (ENSPTXG00000013393)	ENSPTXG00000013394	ENSPTXG00000013395	CTSS (ENSPTXG00000013396)	CTSK (ENSPTXG00000013397)	ARNT (ENSPTXG00000013404)	BNIPL (ENSPTXG00000014993)	CDC42SE1 (ENSPTXG00000014994)	MLLT11 (ENSPTXG00000014995)	GABPB2 (ENSPTXG00000014996)	ENSPTXG00000014997	ENSPTXG00000014998	PSMD4 (ENSPTXG00000014999) #22	ZNF687 (ENSPTXG00000015000) #23	ENSPTXG00000015006	ADAMTSL4 (ENSPTXG00000017629)	ENSPTXG00000017635	ENSPTXG00000008648	ENSPTXG00000008650	NTRK1 (ENSPTXG00000008651)	ENSPTXG00000008652	INSRR (ENSPTXG00000008673)	ENSPTXG00000008799	ENSPTXG00000008800	HDGF (ENSPTXG00000008801)	ENSPTXG00000008802	ENSPTXG00000008803	CRABP2 (ENSPTXG00000008804)
Blue-lipped sea krait	MODERN SPECIES	3552										TNFAIP8L2 (ENSLLTG00000001225)	LYSMD1 (ENSLLTG00000001217)	SCNM1 (ENSLLTG00000001203)	TMOD4 (ENSLLTG00000001183)	VPS72 (ENSLLTG00000001170)	PIP5K1A (ENSLLTG00000001074) #20	PSMD4 (ENSLLTG00000001026) #22	ZNF687 (ENSLLTG00000000996) #23	ENSLLTG00000000931	PI4KB (ENSLLTG00000000563)
Indian cobra	MODERN SPECIES	17	ARNT (ENSNNAG00000005374)	SETDB1 (ENSNNAG00000005428)	ENSNNAG00000005471	MINDY1 (ENSNNAG00000005531)	PRUNE1 (ENSNNAG00000005573)	CDC42SE1 (ENSNNAG00000005605)	MLLT11 (ENSNNAG00000005617)	ENSNNAG00000005625	SEMA6C (ENSNNAG00000005678)	TNFAIP8L2 (ENSNNAG00000006149)	LYSMD1 (ENSNNAG00000006154)	SCNM1 (ENSNNAG00000006161)	TMOD4 (ENSNNAG00000006178)	VPS72 (ENSNNAG00000006200)	PIP5K1A (ENSNNAG00000006229) #20	PSMD4 (ENSNNAG00000006301) #22	ZNF687 (ENSNNAG00000006339) #23	ENSNNAG00000006768	PI4KB (ENSNNAG00000013801)	ENSNNAG00000013825	ENSNNAG00000013844 #19	ENSNNAG00000013882	RPRD2 (ENSNNAG00000013968)	NTRK1 (ENSNNAG00000013997)	ENSNNAG00000014032	ENSNNAG00000014063	ENSNNAG00000014177	ENSNNAG00000014232	ENSNNAG00000014248	ENSNNAG00000014274	ENSNNAG00000014304
tuatara	MODERN SPECIES	1930												LYSMD1 (ENSSPUG00000000071)	SCNM1 (ENSSPUG00000000075)	TMOD4 (ENSSPUG00000000085)	PIP5K1A (ENSSPUG00000000161) #20	PSMD4 (ENSSPUG00000000388) #22	ZNF687 (ENSSPUG00000000413) #23	ENSSPUG00000000418	ENSSPUG00000000431	PI4KB (ENSSPUG00000000554)	ENSSPUG00000000575	ENSSPUG00000000582	ENSSPUG00000000586	ECM1 (ENSSPUG00000000589) #19	ENSSPUG00000000604	ENSSPUG00000000795	PRPF3 (ENSSPUG00000000809)	MRPS21 (ENSSPUG00000000814)	CA14 (ENSSPUG00000000821)	APH1A (ENSSPUG00000000880)	GOT2 (ENSSPUG00000000897)
Cyclostomata	ANCESTRAL SPECIES	79														ENSGT00940000160735	ENSGT01090000260830	ENSGT00530000064050 #22	ENSGT00940000155983
Hagfish	MODERN SPECIES	663												suclg1 (ENSEBUG00000004238)	ENSEBUG00000014712	ENSEBUG00000004136	ENSEBUG00000011344	psmd4a (ENSEBUG00000011483) #22	HTR4 (ENSEBUG00000016987)	ENSEBUG00000012783	TADA2B (ENSEBUG00000008544)	ENSEBUG00000014705
Lamprey	MODERN SPECIES	191														PWWP2B (ENSPMAG00000003044)	ENSPMAG00000003045	psmd4a (ENSPMAG00000003046) #22	HTR4 (ENSPMAG00000003070)	ENSPMAG00000003080	IDUA (ENSPMAG00000003105)	SLC26A2 (ENSPMAG00000003117)	gck (ENSPMAG00000003141)	ENSPMAG00000003177	mfsd13a (ENSPMAG00000003182)	nop56 (ENSPMAG00000003197)	ENSPMAG00000003279	ebf3a (ENSPMAG00000003287)	EBF1 (ENSPMAG00000003301)