Cichlidae	ANCESTRAL SPECIES	7	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b #12	ENSGT00390000002390.b.f #13	ENSGT00770000121795 #14	ENSGT00390000013102.a.b #15	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a #16	ENSGT00940000166158.a.a #17	ENSGT00390000010641.i.b #18	ENSGT00940000154743.A.a.b #19	ENSGT00390000006215.b #20	ENSGT00940000154703.i #21	ENSGT00530000064050.a #22	ENSGT00940000178054	ENSGT00940000156524.a #23	ENSGT00940000164368.A #24	ENSGT00390000018324 #25	ENSGT00390000003453.b.b #26	ENSGT00510000047366.b #27	ENSGT00950000183065.B.f #28	ENSGT00940000154489.B.a #29	ENSGT00530000063948.a #30	ENSGT00940000159107.i #31	ENSGT00940000166691 #7	ENSGT00940000168219 #8	ENSGT00940000154172.a #9	ENSGT00730000111747.b #10	ENSGT00950000182971.B.b #11
Pseudocrenilabrinae	ANCESTRAL SPECIES	12	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b #12	ENSGT00390000002390.b.f #13	ENSGT00770000121795 #14	ENSGT00390000013102.a.b #15	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a #16	ENSGT00940000166158.a.a #17	ENSGT00390000010641.i.b #18	ENSGT00940000154743.A.a.b #19	ENSGT00390000006215.b #20	ENSGT00940000154703.i #21	ENSGT00530000064050.a #22	ENSGT00940000178054	ENSGT00940000156524.a #23	ENSGT00940000164368.A #24	ENSGT00390000018324 #25	ENSGT00390000003453.b.b #26	ENSGT00510000047366.b #27	ENSGT00950000183065.B.f #28	ENSGT00940000154489.B.a #29	ENSGT00530000063948.a #30	ENSGT00940000159107.i #31	ENSGT00940000166691 #7	ENSGT00940000168219 #8	ENSGT00940000154172.a #9	ENSGT00730000111747.b #10	ENSGT00950000182971.B.b #11
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	9	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b #12	ENSGT00390000002390.b.f #13	ENSGT00770000121795 #14	ENSGT00390000013102.a.b #15	ENSGT00940000163756.c.a #16	ENSGT00940000166158.a.a #17	ENSGT00390000010641.i.b #18	ENSGT00940000154743.A.a.b #19	ENSGT00390000006215.b #20	ENSGT00940000154703.i #21	ENSGT00530000064050.a #22	ENSGT00940000178054	ENSGT00940000156524.a #23	ENSGT00940000164368.A #24	ENSGT00390000018324 #25	ENSGT00390000003453.b.b #26	ENSGT00510000047366.b #27	ENSGT00950000183065.B.f #28	ENSGT00940000154489.B.a #29	ENSGT00530000063948.a #30	ENSGT00940000159107.i #31	ENSGT00940000166691 #7	ENSGT00940000168219 #8	ENSGT00940000154172.a #9	ENSGT00730000111747.b #10	ENSGT00950000182971.B.b #11
Haplochromini	ANCESTRAL SPECIES	5	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b #12	ENSGT00390000002390.b.f #13	ENSGT00770000121795 #14	ENSGT00390000013102.a.b #15	ENSGT00940000163756.c.a #16	ENSGT00940000166158.a.a #17	ENSGT00390000010641.i.b #18	ENSGT00940000154743.A.a.b #19	ENSGT00390000006215.b #20	ENSGT00940000154703.i #21	ENSGT00530000064050.a #22	ENSGT00940000178054	ENSGT00940000156524.a #23	ENSGT00940000164368.A #24	ENSGT00390000018324 #25	ENSGT00390000003453.b.b #26	ENSGT00510000047366.b #27	ENSGT00950000183065.B.f #28	ENSGT00940000154489.B.a #29	ENSGT00530000063948.a #30	ENSGT00940000159107.i #31	ENSGT00940000166691 #7	ENSGT00940000168219 #8	ENSGT00940000154172.a #9	ENSGT00730000111747.b #10	ENSGT00950000182971.B.b #11
Haplochromini_A	ANCESTRAL SPECIES	5	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b #12	ENSGT00390000002390.b.f #13	ENSGT00770000121795 #14	ENSGT00390000013102.a.b #15	ENSGT00940000163756.c.a #16	ENSGT00940000166158.a.a #17	ENSGT00390000010641.i.b #18	ENSGT00940000154743.A.a.b #19	ENSGT00390000006215.b #20	ENSGT00940000154703.i #21	ENSGT00530000064050.a #22	ENSGT00940000178054	ENSGT00940000156524.a #23	ENSGT00940000164368.A #24	ENSGT00390000018324 #25	ENSGT00390000003453.b.b #26	ENSGT00510000047366.b #27	ENSGT00950000183065.B.f #28	ENSGT00940000154489.B.a #29	ENSGT00530000063948.a #30	ENSGT00940000159107.i #31	ENSGT00940000166691 #7	ENSGT00940000168219 #8	ENSGT00940000154172.a #9	ENSGT00730000111747.b #10	ENSGT00950000182971.B.b #11
Haplochromini_B	ANCESTRAL SPECIES	1	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b #12	ENSGT00390000002390.b.f #13	ENSGT00770000121795 #14	ENSGT00390000013102.a.b #15	ENSGT00940000163756.c.a #16	ENSGT00940000166158.a.a #17	ENSGT00390000010641.i.b #18	ENSGT00940000154743.A.a.b #19	ENSGT00390000006215.b #20	ENSGT00940000154703.i #21	ENSGT00530000064050.a #22	ENSGT00940000156524.a #23	ENSGT00940000164368.A #24	ENSGT00390000018324 #25	ENSGT00390000003453.b.b #26	ENSGT00510000047366.b #27	ENSGT00950000183065.B.f #28	ENSGT00940000154489.B.a #29	ENSGT00530000063948.a #30	ENSGT00940000159107.i #31	ENSGT00940000166691 #7	ENSGT00940000168219 #8	ENSGT00940000154172.a #9	ENSGT00730000111747.b #10	ENSGT00950000182971.B.b #11	ENSGT00940000166681 #32
Eastern happy	MODERN SPECIES	13	s100s (ENSACLG00000010756) #7	s100u (ENSACLG00000010572) #8	ENSACLG00000010564 #9	ENSACLG00000010538 #10	cks1b (ENSACLG00000010526) #11	mef2d (ENSACLG00000010423) #12	ENSACLG00000010415 #13	ENSACLG00000010399 #14	RPS19 (ENSACLG00000010375) #15	ENSACLG00000010332 #16	ENSACLG00000010328 #17	ndufv1 (ENSACLG00000010319) #18	ENSACLG00000010317 #19	ENSACLG00000010314 #20	PIP5K1A (ENSACLG00000010283) #21	psmd4a (ENSACLG00000010267) #22	znf687b (ENSACLG00000010230) #23	aqp10b (ENSACLG00000010213) #24	hax1 (ENSACLG00000010206) #25	ubap2l (ENSACLG00000010119) #26	C1orf43 (ENSACLG00000010093) #27	ENSACLG00000010075 #28	cgnb (ENSACLG00000010046) #29	pygo2 (ENSACLG00000010034) #30	SHE (ENSACLG00000010028) #31	ENSACLG00000009992 #32	ENSACLG00000009983 #33	efna1a (ENSACLG00000009980) #34	dpm3 (ENSACLG00000009972) #35	trim46b (ENSACLG00000009963) #36	s100a10a (ENSACLG00000009958) #37
Zebra mbuna	MODERN SPECIES	1104	mrpl9 (ENSMZEG00005026632)	prcc (ENSMZEG00005026630)	HDGF (ENSMZEG00005026627)	mrpl24 (ENSMZEG00005026624)	ENSMZEG00005026622	mef2d (ENSMZEG00005026614) #12	ENSMZEG00005026611 #13	ENSMZEG00005026609 #14	RPS19 (ENSMZEG00005026604) #15	ENSMZEG00005026602 #16	ENSMZEG00005026600 #17	ndufv1 (ENSMZEG00005026598) #18	ENSMZEG00005026597 #19	ENSMZEG00005026595 #20	pip5k1aa (ENSMZEG00005026593)	psmd4a (ENSMZEG00005026591) #22	znf687b (ENSMZEG00005026588) #23	aqp10b (ENSMZEG00005026582) #24	hax1 (ENSMZEG00005026578) #25	ubap2l (ENSMZEG00005026572) #26	C1orf43 (ENSMZEG00005026569) #27	ENSMZEG00005026566 #28	cgnb (ENSMZEG00005026565) #29	pygo2 (ENSMZEG00005026564) #30	SHE (ENSMZEG00005026562) #31	ENSMZEG00005026561	s100s (ENSMZEG00005026559) #7	s100u (ENSMZEG00005026557) #8	ENSMZEG00005026555 #9	ENSMZEG00005026551 #10	cks1b (ENSMZEG00005026550) #11
P. nyererei	MODERN SPECIES	397	mrpl9 (ENSPNYG00000009390)	prcc (ENSPNYG00000009406)	ENSPNYG00000009424	mrpl24 (ENSPNYG00000009437)	ENSPNYG00000009488	mef2d (ENSPNYG00000009684) #12	ENSPNYG00000009733 #13	ENSPNYG00000009742 #14	RPS19 (ENSPNYG00000009770) #15	ENSPNYG00000009795 #16	ENSPNYG00000009815 #17	ndufv1 (ENSPNYG00000009841) #18	ENSPNYG00000009873 #19	ENSPNYG00000009893 #20	PIP5K1A (ENSPNYG00000009908) #21	psmd4a (ENSPNYG00000009957) #22	ENSPNYG00000009982	znf687b (ENSPNYG00000010000) #23	aqp10b (ENSPNYG00000010082) #24	hax1 (ENSPNYG00000010366) #25	ubap2l (ENSPNYG00000010412) #26	C1orf43 (ENSPNYG00000010519) #27	ENSPNYG00000010562 #28	cgnb (ENSPNYG00000010580) #29	pygo2 (ENSPNYG00000010614) #30	SHE (ENSPNYG00000010625) #31	s100s (ENSPNYG00000010649) #7	s100u (ENSPNYG00000010681) #8	ENSPNYG00000010695 #9	ENSPNYG00000010753 #10	cks1b (ENSPNYG00000010772) #11
Burton s mouthbrooder	MODERN SPECIES	357	si:dkey-266f7.9 (ENSHBUG00000021607)	ENSHBUG00000021576	mrpl9 (ENSHBUG00000021568)	prcc (ENSHBUG00000000809)	HDGF (ENSHBUG00000021552)	ENSHBUG00000021524	mef2d (ENSHBUG00000021492) #12	ENSHBUG00000021391 #13	ENSHBUG00000021381 #14	RPS19 (ENSHBUG00000021364) #15	ENSHBUG00000021336 #16	ENSHBUG00000021231 #17	ndufv1 (ENSHBUG00000021207) #18	ENSHBUG00000021174 #19	PIP5K1A (ENSHBUG00000021166) #21	psmd4a (ENSHBUG00000021151) #22	ENSHBUG00000021090	znf687b (ENSHBUG00000021078) #23	aqp10b (ENSHBUG00000021063) #24	hax1 (ENSHBUG00000021052) #25	ubap2l (ENSHBUG00000021037) #26	C1orf43 (ENSHBUG00000001034) #27	ENSHBUG00000020859 #28	cgnb (ENSHBUG00000020841) #29	pygo2 (ENSHBUG00000020816) #30	SHE (ENSHBUG00000020801) #31	s100s (ENSHBUG00000020793) #7	s100u (ENSHBUG00000020788) #8	ENSHBUG00000020785 #9	ENSHBUG00000020772 #10	cks1b (ENSHBUG00000020757) #11
Lyretail cichlid	MODERN SPECIES	302	si:dkey-266f7.9 (ENSNBRG00000015259)	mrpl9 (ENSNBRG00000015276)	prcc (ENSNBRG00000015303)	ENSNBRG00000015365	ENSNBRG00000015386	mef2d (ENSNBRG00000015507) #12	ENSNBRG00000015530 #13	ENSNBRG00000015538 #14	RPS19 (ENSNBRG00000015559) #15	ENSNBRG00000015569 ##16	ENSNBRG00000015581 #17	ndufv1 (ENSNBRG00000015594) #18	ENSNBRG00000015606 #19	ENSNBRG00000015628 #20	PIP5K1A (ENSNBRG00000015643) #21	psmd4a (ENSNBRG00000015701) #22	ENSNBRG00000015739	znf687b (ENSNBRG00000015762) #23	aqp10b (ENSNBRG00000015843) #24	hax1 (ENSNBRG00000016015) #25	ubap2l (ENSNBRG00000016054) #26	C1orf43 (ENSNBRG00000016149) #27	ENSNBRG00000016185 #28	cgnb (ENSNBRG00000016236) #29	pygo2 (ENSNBRG00000016278) #30	SHE (ENSNBRG00000016283) #31	s100s (ENSNBRG00000016313) #7	s100u (ENSNBRG00000016377) #8	ENSNBRG00000016388 #9	ENSNBRG00000016435 #10	cks1b (ENSNBRG00000016502) #11
Nile tilapia	MODERN SPECIES	13	prcc (ENSONIG00000033561)	ENSONIG00000031957	ENSONIG00000028554	mrpl24 (ENSONIG00000019772)	ENSONIG00000019771	mef2d (ENSONIG00000019767) #12	ENSONIG00000019766 #13	ENSONIG00000040681 #14	RPS19 (ENSONIG00000019765) #15	ENSONIG00000042248	ENSONIG00000019760 #16	ENSONIG00000019758 #17	ndufv1 (ENSONIG00000019756) #18	ENSONIG00000019755 #19	PIP5K1A (ENSONIG00000019753) #21	psmd4a (ENSONIG00000019752) #22	znf687b (ENSONIG00000019751) #23	ENSONIG00000028636	aqp10b (ENSONIG00000019750) #24	hax1 (ENSONIG00000019747) #25	ubap2l (ENSONIG00000019743) #26	C1orf43 (ENSONIG00000019739) #27	ENSONIG00000019738 #28	cgnb (ENSONIG00000019737) #29	pygo2 (ENSONIG00000033754) #30	SHE (ENSONIG00000019733) #31	s100s (ENSONIG00000027404) #7	s100u (ENSONIG00000019731) #8	ENSONIG00000032250 #9	ENSONIG00000019730 #10	cks1b (ENSONIG00000027098) #11
Midas cichlid	MODERN SPECIES	329	mrpl9 (ENSACIG00000002519)	prcc (ENSACIG00000002542)	HDGF (ENSACIG00000002607)	mrpl24 (ENSACIG00000002624)	BCAN (ENSACIG00000002645)	mef2d (ENSACIG00000002746) #12	tmem79a (ENSACIG00000002883) #13	ENSACIG00000002899 #14	RPS19 (ENSACIG00000002928) #15	ENSACIG00000002943 #16	ENSACIG00000003020 #17	ndufv1 (ENSACIG00000003043) #18	ENSACIG00000003224 #19	ENSACIG00000003294 #20	pip5k1aa (ENSACIG00000003302)	psmd4a (ENSACIG00000003403) #22	ENSACIG00000003431	znf687b (ENSACIG00000003449) #23	aqp10b (ENSACIG00000003498) #24	hax1 (ENSACIG00000003544) #25	ubap2l (ENSACIG00000003560) #26	C1orf43 (ENSACIG00000003732) #27	ENSACIG00000003760 #28	cgnb (ENSACIG00000003819) #29	SHE (ENSACIG00000003908) #31	s100s (ENSACIG00000003938) #7	ENSACIG00000003994	ENSACIG00000004006 #9	ENSACIG00000004067 #10	cks1b (ENSACIG00000004101) #11	ENSACIG00000004110 #32