Rodentia_A	ANCESTRAL SPECIES	16	ENSGT00390000009916 #7	ENSGT00940000154739.A #8	ENSGT00390000009016 #9	ENSGT00700000104610 #10	ENSGT00940000154396.b.a #11	ENSGT01050000244879.a.b #12	ENSGT00390000011987 #13	ENSGT00940000162059 #14	ENSGT00390000009595.b #15	ENSGT00390000016855 #16	ENSGT00950000183135.A.b #17	ENSGT00940000162102 #18	ENSGT00390000011740 #19	ENSGT00390000013732 #20	ENSGT00530000063615.b #21	ENSGT00940000156518.C #22	ENSGT00900000141021.b.b #23	ENSGT00940000163101 #24	ENSGT00940000159327 #25	ENSGT00530000063646.b #26	ENSGT00940000162404 #27	ENSGT00860000135639 #28	ENSGT00950000182916.a.b.a.a.a.b.b #29	ENSGT00950000185200	ENSGT00530000063926.b #30	ENSGT00390000013719 #31	ENSGT00390000012078.a.b #32	ENSGT00950000182915.b.b.a.a #33	ENSGT00390000006387 #34	ENSGT00390000004872 #35	ENSGT00940000158116 #36
Sciuridae	ANCESTRAL SPECIES	20	ENSGT00390000009916 #7	ENSGT00940000154739.A #8	ENSGT00390000009016 #9	ENSGT00700000104610 #10	ENSGT00940000154396.b.a #11	ENSGT01050000244879.a.b #12	ENSGT00390000011987 #13	ENSGT00940000162059 #14	ENSGT00390000009595.b #15	ENSGT00390000016855 #16	ENSGT00950000183135.A.b #17	ENSGT00940000162102 #18	ENSGT00390000011740 #19	ENSGT00390000013732 #20	ENSGT00530000063615.b #21	ENSGT00940000156518.C #22	ENSGT00900000141021.b.b #23	ENSGT00940000163101 #24	ENSGT00940000159327 #25	ENSGT00530000063646.b #26	ENSGT00940000162404 #27	ENSGT00860000135639 #28	ENSGT00950000182916.a.b.a.a.a.b.b #29	ENSGT00530000063926.b #30	ENSGT00390000013719 #31	ENSGT00390000012078.a.b #32	ENSGT00950000182915.b.b.a.a #33	ENSGT00390000006387 #34	ENSGT00390000004872 #35	ENSGT00940000158116 #36	ENSGT00940000161856 #37
Marmotini	ANCESTRAL SPECIES	41	ENSGT00390000009916 #7	ENSGT00940000154739.A #8	ENSGT00390000009016 #9	ENSGT00700000104610 #10	ENSGT00940000154396.b.a #11	ENSGT01050000244879.a.b #12	ENSGT00390000011987 #13	ENSGT00940000162059 #14	ENSGT00390000009595.b #15	ENSGT00390000016855 #16	ENSGT00950000183135.A.b #17	ENSGT00940000162102 #18	ENSGT00390000011740 #19	ENSGT00390000013732 #20	ENSGT00530000063615.b #21	ENSGT00940000156518.C #22	ENSGT00900000141021.b.b #23	ENSGT00940000163101 #24	ENSGT00940000159327 #25	ENSGT00530000063646.b #26	ENSGT00940000162404 #27	ENSGT00860000135639 #28	ENSGT00950000182916.a.b.a.a.a.b.b #29	ENSGT00530000063926.b #30	ENSGT00390000013719 #31	ENSGT00390000012078.a.b #32	ENSGT00950000182915.b.b.a.a #33	ENSGT00390000006387 #34	ENSGT00390000004872 #35	ENSGT00940000158116 #36	ENSGT00940000161856 #37
Marmotini_b	ANCESTRAL SPECIES	40	ENSGT00390000009916 #7	ENSGT00940000154739.A #8	ENSGT00390000009016 #9	ENSGT00700000104610 #10	ENSGT00940000154396.b.a #11	ENSGT01050000244879.a.b #12	ENSGT00390000011987 #13	ENSGT00940000162059 #14	ENSGT00390000009595.b #15	ENSGT00390000016855 #16	ENSGT00950000183135.A.b #17	ENSGT00940000162102 #18	ENSGT00390000011740 #19	ENSGT00390000013732 #20	ENSGT00530000063615.b #21	ENSGT00940000156518.C #22	ENSGT00900000141021.b.b #23	ENSGT00940000163101 #24	ENSGT00940000159327 #25	ENSGT00530000063646.b #26	ENSGT00940000162404 #27	ENSGT00860000135639 #28	ENSGT00950000182916.a.b.a.a.a.b.b #29	ENSGT00530000063926.b #30	ENSGT00390000013719 #31	ENSGT00390000012078.a.b #32	ENSGT00950000182915.b.b.a.a #33	ENSGT00390000006387 #34	ENSGT00390000004872 #35	ENSGT00940000158116 #36	ENSGT00940000161856 #37
Arctic ground squirrel	MODERN SPECIES	217	C19orf67 (ENSUPAG00010011838) #7	MISP3 (ENSUPAG00010011828) #8	PALM3 (ENSUPAG00010011814) #9	IL27RA (ENSUPAG00010011800) #10	RLN3 (ENSUPAG00010011794) #11	RFX1 (ENSUPAG00010011748) #12	DCAF15 (ENSUPAG00010011735) #13	PODNL1 (ENSUPAG00010011723) #14	CC2D1A (ENSUPAG00010011706) #15	BRME1 (ENSUPAG00010011699) #16	NANOS3 (ENSUPAG00010011697) #17	ZSWIM4 (ENSUPAG00010011666) #18	C19orf53 (ENSUPAG00010011656) #19	MRI1 (ENSUPAG00010011651) #20	YJU2B (ENSUPAG00010011639) #21	CACNA1A (ENSUPAG00010008388) #22	IER2 (ENSUPAG00010008375) #23	STX10 (ENSUPAG00010008362) #24	NACC1 (ENSUPAG00010008354) #25	TRMT1 (ENSUPAG00010008343) #26	LYL1 (ENSUPAG00010008333) #27	ENSUPAG00010008329 #28	NFIX (ENSUPAG00010008230) #29	DAND5 (ENSUPAG00010008227) #30	GADD45GIP1 (ENSUPAG00010008222) #31	RAD23A (ENSUPAG00010008197) #32	CALR (ENSUPAG00010008184) #33	FARSA (ENSUPAG00010008158) #34	SYCE2 (ENSUPAG00010008135) #35	GCDH (ENSUPAG00010008102) #36	KLF1 (ENSUPAG00010008092) #37
Squirrel	MODERN SPECIES	259	PRKACA (ENSSTOG00000002327)	C19orf67 (ENSSTOG00000001321) #7	PALM3 (ENSSTOG00000023133) #9	IL27RA (ENSSTOG00000008690) #10	RLN3 (ENSSTOG00000024302) #11	RFX1 (ENSSTOG00000025432) #12	DCAF15 (ENSSTOG00000024329) #13	PODNL1 (ENSSTOG00000021014) #14	CC2D1A (ENSSTOG00000019980) #15	BRME1 (ENSSTOG00000028732) #16	NANOS3 (ENSSTOG00000024797) #17	ZSWIM4 (ENSSTOG00000021055) #18	C19orf53 (ENSSTOG00000011602) #19	MRI1 (ENSSTOG00000020750) #20	YJU2B (ENSSTOG00000006281) #21	CACNA1A (ENSSTOG00000024862) #22	IER2 (ENSSTOG00000007900) #23	STX10 (ENSSTOG00000007880) #24	NACC1 (ENSSTOG00000007865) #25	TRMT1 (ENSSTOG00000012531) #26	LYL1 (ENSSTOG00000028401) #27	NFIX (ENSSTOG00000007848) #29	DAND5 (ENSSTOG00000016420) #30	GADD45GIP1 (ENSSTOG00000016419) #31	RAD23A (ENSSTOG00000024117) #32	CALR (ENSSTOG00000008774) #33	FARSA (ENSSTOG00000008748) #34	SYCE2 (ENSSTOG00000008737) #35	GCDH (ENSSTOG00000008724) #36	KLF1 (ENSSTOG00000021956) #37	DNASE2 (ENSSTOG00000008712)
Eurasian red squirrel	MODERN SPECIES	7	IL27RA (ENSSVLG00005025225) #10	RLN3 (ENSSVLG00005025204) #11	RFX1 (ENSSVLG00005025184) #12	DCAF15 (ENSSVLG00005025150) #13	PODNL1 (ENSSVLG00005025116) #14	ENSSVLG00005025075 #16	NANOS3 (ENSSVLG00005025060) #17	ZSWIM4 (ENSSVLG00005025031) #18	C19orf53 (ENSSVLG00005025010) #19	MRI1 (ENSSVLG00005025000) #20	YJU2B (ENSSVLG00005024977) #21	ENSSVLG00005024956	ENSSVLG00005024939	ENSSVLG00005024924	ENSSVLG00005024893	CACNA1A (ENSSVLG00005020388) #22	IER2 (ENSSVLG00005018745) #23	STX10 (ENSSVLG00005018658) #24	NACC1 (ENSSVLG00005018614) #25	TRMT1 (ENSSVLG00005018534) #26	LYL1 (ENSSVLG00005018485) #27	NFIX (ENSSVLG00005018211) #29	DAND5 (ENSSVLG00005018136) #30	GADD45GIP1 (ENSSVLG00005018098) #31	RAD23A (ENSSVLG00005018009) #32	CALR (ENSSVLG00005017951) #33	FARSA (ENSSVLG00005017880) #34	ENSSVLG00005017827 #35	GCDH (ENSSVLG00005017674) #36	KLF1 (ENSSVLG00005017619) #37	DNASE2 (ENSSVLG00005017585)
Hystricomorpha	ANCESTRAL SPECIES	55	ENSGT00390000009916 #7	ENSGT00940000154739.A #8	ENSGT00390000009016 #9	ENSGT00700000104610 #10	ENSGT00940000154396.b.a #11	ENSGT01050000244879.a.b #12	ENSGT00390000011987 #13	ENSGT00940000162059 #14	ENSGT00390000009595.b #15	ENSGT00390000016855 #16	ENSGT00950000183135.A.b #17	ENSGT00940000162102 #18	ENSGT00390000011740 #19	ENSGT00390000013732 #20	ENSGT00530000063615.b #21	ENSGT00940000156518.C #22	ENSGT00900000141021.b.b #23	ENSGT00940000159327 #25	ENSGT00530000063646.b #26	ENSGT00940000162404 #27	ENSGT00950000182916.a.b.a.a.a.b.b #29	ENSGT00950000185200	ENSGT00530000063926.b #30	ENSGT00390000013719 #31	ENSGT00390000012078.a.b #32	ENSGT00950000182915.b.b.a.a.k.b #33	ENSGT00950000182915.b.b.a.a.l #33	ENSGT00390000006387 #34	ENSGT00390000004872 #35	ENSGT00940000158116 #36	ENSGT00940000161856 #37
Hystricomorpha_a	ANCESTRAL SPECIES	15	ENSGT00390000009916 #7	ENSGT00940000154739.A #8	ENSGT00390000009016 #9	ENSGT00700000104610 #10	ENSGT00940000154396.b.a #11	ENSGT01050000244879.a.b #12	ENSGT00390000011987 #13	ENSGT00940000162059 #14	ENSGT00390000009595.b #15	ENSGT00390000016855 #16	ENSGT00950000183135.A.b #17	ENSGT00940000162102 #18	ENSGT00390000011740 #19	ENSGT00390000013732 #20	ENSGT00530000063615.b #21	ENSGT00940000156518.C #22	ENSGT00900000141021.b.b #23	ENSGT00940000159327 #25	ENSGT00530000063646.b #26	ENSGT00940000162404 #27	ENSGT00950000182916.a.b.a.a.a.b.b #29	ENSGT00530000063926.b #30	ENSGT00390000013719 #31	ENSGT00390000012078.a.b #32	ENSGT00950000182915.b.b.a.a.k.b #33	ENSGT00950000182915.b.b.a.a.l #33	ENSGT00390000006387 #34	ENSGT00390000004872 #35	ENSGT00940000158116 #36	ENSGT00940000161856 #37	ENSGT00390000002634.a
Guinea pig	MODERN SPECIES	42	ENSCPOG00000038479	TNNI2 (ENSCPOG00000008658)	SYT8 (ENSCPOG00000036706)	CTSD (ENSCPOG00000008493)	IFITM10 (ENSCPOG00000019284)	IL27RA (ENSCPOG00000013567) #10	RLN3 (ENSCPOG00000013564) #11	RFX1 (ENSCPOG00000010089) #12	DCAF15 (ENSCPOG00000010084) #13	PODNL1 (ENSCPOG00000021831) #14	CC2D1A (ENSCPOG00000004231) #15	NANOS3 (ENSCPOG00000020727) #17	C19orf53 (ENSCPOG00000013192) #19	MRI1 (ENSCPOG00000013191) #20	YJU2B (ENSCPOG00000006545) #21	CACNA1A (ENSCPOG00000025184) #22	NACC1 (ENSCPOG00000022222) #25	TRMT1 (ENSCPOG00000011754) #26	LYL1 (ENSCPOG00000036111) #27	NFIX (ENSCPOG00000022563) #29	RAD23A (ENSCPOG00000037407) #32	GADD45GIP1 (ENSCPOG00000024072) #31	CALR (ENSCPOG00000000791) #33	FARSA (ENSCPOG00000000787) #34	ENSCPOG00000033097 #35	GCDH (ENSCPOG00000027058) #36	KLF1 (ENSCPOG00000000784) #37	DNASE2 (ENSCPOG00000000783)	MAST1 (ENSCPOG00000000777)	RTBDN (ENSCPOG00000000774)	RNASEH2A (ENSCPOG00000038877)
Hystricomorpha_b	ANCESTRAL SPECIES	31	ENSGT00390000009916 #7	ENSGT00940000154739.A #8	ENSGT00390000009016 #9	ENSGT00700000104610 #10	ENSGT00940000154396.b.a #11	ENSGT01050000244879.a.b #12	ENSGT00390000011987 #13	ENSGT00940000162059 #14	ENSGT00390000009595.b #15	ENSGT00390000016855 #16	ENSGT00950000183135.A.b #17	ENSGT00940000162102 #18	ENSGT00390000011740 #19	ENSGT00390000013732 #20	ENSGT00530000063615.b #21	ENSGT00940000156518.C #22	ENSGT00900000141021.b.b #23	ENSGT00940000159327 #25	ENSGT00530000063646.b #26	ENSGT00940000162404 #27	ENSGT00950000182916.a.b.a.a.a.b.b #29	ENSGT00530000063926.b #30	ENSGT00390000013719 #31	ENSGT00390000012078.a.b #32	ENSGT00950000182915.b.b.a.a.k.b #33	ENSGT00950000182915.b.b.a.a.l #33	ENSGT00390000006387 #34	ENSGT00390000004872 #35	ENSGT00940000158116 #36	ENSGT00940000161856 #37	ENSGT00390000002634.a
Long-tailed chinchilla	MODERN SPECIES	122	PRKACA (ENSCLAG00000015604)	C19orf67 (ENSCLAG00000014973) #7	PALM3 (ENSCLAG00000016217) #9	IL27RA (ENSCLAG00000013752) #10	RLN3 (ENSCLAG00000013074) #11	RFX1 (ENSCLAG00000013348) #12	DCAF15 (ENSCLAG00000015146) #13	PODNL1 (ENSCLAG00000013361) #14	CC2D1A (ENSCLAG00000012998) #15	ENSCLAG00000015002 #16	NANOS3 (ENSCLAG00000015139) #17	ZSWIM4 (ENSCLAG00000011642) #18	C19orf53 (ENSCLAG00000011489) #19	MRI1 (ENSCLAG00000013025) #20	YJU2B (ENSCLAG00000011790) #21	CACNA1A (ENSCLAG00000013282) #22	IER2 (ENSCLAG00000015309) #23	NACC1 (ENSCLAG00000016122) #25	TRMT1 (ENSCLAG00000015295) #26	LYL1 (ENSCLAG00000014483) #27	NFIX (ENSCLAG00000013479) #29	DAND5 (ENSCLAG00000011402) #30	GADD45GIP1 (ENSCLAG00000015799) #31	RAD23A (ENSCLAG00000016638) #32	CALR (ENSCLAG00000012923) #33	FARSA (ENSCLAG00000015489) #34	SYCE2 (ENSCLAG00000014420) #35	GCDH (ENSCLAG00000015590) #36	KLF1 (ENSCLAG00000013218) #37	DNASE2 (ENSCLAG00000012983)	MAST1 (ENSCLAG00000012224)
Degu	MODERN SPECIES	114	C19orf67 (ENSODEG00000010090) #7	MISP3 (ENSODEG00000009732) #8	PALM3 (ENSODEG00000008820) #9	IL27RA (ENSODEG00000009893) #10	RLN3 (ENSODEG00000009268) #11	RFX1 (ENSODEG00000011025) #12	DCAF15 (ENSODEG00000010421) #13	ENSODEG00000011425	PODNL1 (ENSODEG00000009051) #14	CC2D1A (ENSODEG00000009306) #15	NANOS3 (ENSODEG00000008907) #17	ZSWIM4 (ENSODEG00000009901) #18	C19orf53 (ENSODEG00000009270) #19	ENSODEG00000010083 #20	YJU2B (ENSODEG00000009976) #21	CACNA1A (ENSODEG00000009256) #22	IER2 (ENSODEG00000013532) #23	NACC1 (ENSODEG00000009255) #25	ENSODEG00000019786	TRMT1 (ENSODEG00000010323) #26	LYL1 (ENSODEG00000010992) #27	NFIX (ENSODEG00000010171) #29	ENSODEG00000010129	GADD45GIP1 (ENSODEG00000010728) #31	RAD23A (ENSODEG00000011287) #32	CALR (ENSODEG00000010711) #33	FARSA (ENSODEG00000010433) #34	ENSODEG00000010928 #35	GCDH (ENSODEG00000010247) #36	KLF1 (ENSODEG00000009692) #37	DNASE2 (ENSODEG00000009845)
Naked mole-rat female	MODERN SPECIES	21	ENSHGLG00000003524	ENSHGLG00000046535	NOTCH3 (ENSHGLG00000006380)	ENSHGLG00000004261	EPHX3 (ENSHGLG00000050720)	BRD4 (ENSHGLG00000004103)	AKAP8 (ENSHGLG00000006879)	AKAP8L (ENSHGLG00000019540)	ENSHGLG00000015009	RASAL3 (ENSHGLG00000014513)	PGLYRP2 (ENSHGLG00000006376)	CYP4F22 (ENSHGLG00000007762)	ENSHGLG00000010876	CYP4F3 (ENSHGLG00000005064)	ENSHGLG00000006444	ENSHGLG00000038601 #22