Euarchontoglires_A	ANCESTRAL SPECIES	20	ENSGT00390000009916	ENSGT00940000154739.A	ENSGT00390000009016 #7	ENSGT00700000104610 #8	ENSGT00940000154396.b.a #9	ENSGT01050000244879.a.b #12	ENSGT00390000011987 #13	ENSGT00940000162059 #14	ENSGT00390000009595.b #15	ENSGT00390000016855 #16	ENSGT00950000183135.A.b #17	ENSGT00940000162102 #18	ENSGT00390000011740 #19	ENSGT00390000013732 #20	ENSGT00530000063615.b #21	ENSGT00940000156518.C #22	ENSGT00900000141021.b.b #23	ENSGT00940000163101	ENSGT00940000159327 #24	ENSGT00530000063646.b	ENSGT00940000162404 #25	ENSGT00860000135639	ENSGT00950000182916.a.b.a.a.a.b.b #26	ENSGT00950000185200	ENSGT00530000063926.b #27	ENSGT00390000013719 #28	ENSGT00390000012078.a.b #29	ENSGT00950000182915.b.b.a.a #30	ENSGT00390000006387 #31	ENSGT00390000004872 #32	ENSGT00940000158116 #33
Glires	ANCESTRAL SPECIES	21	ENSGT00390000009916	ENSGT00940000154739.A	ENSGT00390000009016 #7	ENSGT00700000104610 #8	ENSGT00940000154396.b.a #9	ENSGT01050000244879.a.b #12	ENSGT00390000011987 #13	ENSGT00940000162059 #14	ENSGT00390000009595.b #15	ENSGT00390000016855 #16	ENSGT00950000183135.A.b #17	ENSGT00940000162102 #18	ENSGT00390000011740 #19	ENSGT00390000013732 #20	ENSGT00530000063615.b #21	ENSGT00940000156518.C #22	ENSGT00900000141021.b.b #23	ENSGT00940000163101	ENSGT00940000159327 #24	ENSGT00530000063646.b	ENSGT00940000162404 #25	ENSGT00860000135639	ENSGT00950000182916.a.b.a.a.a.b.b #26	ENSGT00950000185200	ENSGT00530000063926.b #27	ENSGT00390000013719 #28	ENSGT00390000012078.a.b #29	ENSGT00950000182915.b.b.a.a #30	ENSGT00390000006387 #31	ENSGT00390000004872 #32	ENSGT00940000158116 #33
Rodentia	ANCESTRAL SPECIES	17	ENSGT00390000009916	ENSGT00940000154739.A	ENSGT00390000009016 #7	ENSGT00700000104610 #8	ENSGT00940000154396.b.a #9	ENSGT01050000244879.a.b #12	ENSGT00390000011987 #13	ENSGT00940000162059 #14	ENSGT00390000009595.b #15	ENSGT00390000016855 #16	ENSGT00950000183135.A.b #17	ENSGT00940000162102 #18	ENSGT00390000011740 #19	ENSGT00390000013732 #20	ENSGT00530000063615.b #21	ENSGT00940000156518.C #22	ENSGT00900000141021.b.b #23	ENSGT00940000163101	ENSGT00940000159327 #24	ENSGT00530000063646.b	ENSGT00940000162404 #25	ENSGT00860000135639	ENSGT00950000182916.a.b.a.a.a.b.b #26	ENSGT00950000185200	ENSGT00530000063926.b #27	ENSGT00390000013719 #28	ENSGT00390000012078.a.b #29	ENSGT00950000182915.b.b.a.a #30	ENSGT00390000006387 #31	ENSGT00390000004872 #32	ENSGT00940000158116 #33
Rodentia_B	ANCESTRAL SPECIES	43	ENSGT00390000009916	ENSGT00940000154739.A	ENSGT00390000009016 #7	ENSGT00700000104610 #8	ENSGT00940000154396.b.a #9	ENSGT01050000244879.a.b #12	ENSGT00390000011987 #13	ENSGT00940000162059 #14	ENSGT00390000009595.b #15	ENSGT00390000016855 #16	ENSGT00950000183135.A.b #17	ENSGT00940000162102 #18	ENSGT00390000011740 #19	ENSGT00390000013732 #20	ENSGT00530000063615.b #21	ENSGT00940000156518.C #22	ENSGT00900000141021.b.b #23	ENSGT00940000163101	ENSGT00940000159327 #24	ENSGT00530000063646.b	ENSGT00940000162404 #25	ENSGT00860000135639	ENSGT00950000182916.a.b.a.a.a.b.b #26	ENSGT00530000063926.b #27	ENSGT00390000013719 #28	ENSGT00390000012078.a.b #29	ENSGT00950000182915.b.b.a.a #30	ENSGT00390000006387 #31	ENSGT00390000004872 #32	ENSGT00940000158116 #33	ENSGT00940000161856 #34
Myomorpha	ANCESTRAL SPECIES	52	ENSGT00390000009916	ENSGT00940000154739.A	ENSGT00390000009016 #7	ENSGT00700000104610 #8	ENSGT00940000154396.b.a #9	ENSGT01050000244879.a.b #12	ENSGT00390000011987 #13	ENSGT00940000162059 #14	ENSGT00390000009595.b #15	ENSGT00390000016855 #16	ENSGT00950000183135.A.b #17	ENSGT00940000162102 #18	ENSGT00390000011740 #19	ENSGT00390000013732 #20	ENSGT00530000063615.b #21	ENSGT00940000156518.C #22	ENSGT00900000141021.b.b #23	ENSGT00940000163101	ENSGT00940000159327 #24	ENSGT00530000063646.b	ENSGT00940000162404 #25	ENSGT00860000135639	ENSGT00950000182916.a.b.a.a.a.b.b #26	ENSGT00530000063926.b #27	ENSGT00390000013719 #28	ENSGT00390000012078.a.b #29	ENSGT00950000182915.b.b.a.a #30	ENSGT00390000006387 #31	ENSGT00390000004872 #32	ENSGT00940000158116 #33	ENSGT00940000161856 #34
Muroidea	ANCESTRAL SPECIES	60	ENSGT00390000009916	ENSGT00940000154739.A	ENSGT00390000009016 #7	ENSGT00700000104610 #8	ENSGT00940000154396.b.a #9	ENSGT01050000244879.a.b #12	ENSGT00390000011987 #13	ENSGT00940000162059 #14	ENSGT00390000009595.b #15	ENSGT00390000016855 #16	ENSGT00950000183135.A.b #17	ENSGT00940000162102 #18	ENSGT00390000011740 #19	ENSGT00390000013732 #20	ENSGT00530000063615.b #21	ENSGT00940000156518.C #22	ENSGT00900000141021.b.b #23	ENSGT00940000159327 #24	ENSGT00530000063646.b	ENSGT00940000162404 #25	ENSGT00860000135639	ENSGT00950000182916.a.b.a.a.a.b.b #26	ENSGT00530000063926.b #27	ENSGT00390000013719 #28	ENSGT00390000012078.a.b #29	ENSGT00950000182915.b.b.a.a #30	ENSGT00390000006387 #31	ENSGT00390000004872 #32	ENSGT00940000158116 #33	ENSGT00940000161856 #34	ENSGT00390000002634.a #35
Muroidea_A	ANCESTRAL SPECIES	16	ENSGT00390000009916	ENSGT00940000154739.A	ENSGT00390000009016 #7	ENSGT00700000104610 #8	ENSGT00940000154396.b.a #9	ENSGT01050000244879.a.b #12	ENSGT00390000011987 #13	ENSGT00940000162059 #14	ENSGT00390000009595.b #15	ENSGT00390000016855 #16	ENSGT00950000183135.A.b #17	ENSGT00940000162102 #18	ENSGT00390000011740 #19	ENSGT00390000013732 #20	ENSGT00530000063615.b #21	ENSGT00940000156518.C #22	ENSGT00900000141021.b.b #23	ENSGT00940000159327 #24	ENSGT00530000063646.b	ENSGT00940000162404 #25	ENSGT00860000135639	ENSGT00950000182916.a.b.a.a.a.b.b #26	ENSGT00530000063926.b #27	ENSGT00390000013719 #28	ENSGT00390000012078.a.b #29	ENSGT00950000182915.b.b.a.a #30	ENSGT00390000006387 #31	ENSGT00390000004872 #32	ENSGT00940000158116 #33	ENSGT00940000161856 #34	ENSGT00390000002634.a #35
Murinae	ANCESTRAL SPECIES	15	ENSGT00390000009916	ENSGT00940000154739.A	ENSGT00390000009016 #7	ENSGT00700000104610 #8	ENSGT00940000154396.b.a #9	ENSGT01050000244879.a.b #12	ENSGT00390000011987 #13	ENSGT00940000162059 #14	ENSGT00390000009595.b #15	ENSGT00390000016855 #16	ENSGT00950000183135.A.b #17	ENSGT00940000162102 #18	ENSGT00390000011740 #19	ENSGT00390000013732 #20	ENSGT00530000063615.b #21	ENSGT00940000156518.C #22	ENSGT00900000141021.b.b #23	ENSGT00940000159327 #24	ENSGT00530000063646.b	ENSGT00940000162404 #25	ENSGT00860000135639	ENSGT00950000182916.a.b.a.a.a.b.b #26	ENSGT00530000063926.b #27	ENSGT00390000013719 #28	ENSGT00390000012078.a.b #29	ENSGT00950000182915.b.b.a.a #30	ENSGT00390000006387 #31	ENSGT00390000004872 #32	ENSGT00940000158116 #33	ENSGT00940000161856.d #34	ENSGT00390000002634.a #35
Mus	ANCESTRAL SPECIES	6	ENSGT00390000009016 #7	ENSGT00700000104610 #8	ENSGT00940000154396.b.a #9	ENSGT00950000183929 #10	ENSGT00900000143265 #11	ENSGT01050000244879.a.b #12	ENSGT00390000011987 #13	ENSGT00940000162059 #14	ENSGT00390000009595.b #15	ENSGT00390000016855 #16	ENSGT00950000183135.A.b #17	ENSGT00940000162102 #18	ENSGT00390000011740 #19	ENSGT00390000013732 #20	ENSGT00530000063615.b #21	ENSGT00940000156518.C #22	ENSGT00900000141021.b.b #23	ENSGT00940000159327 #24	ENSGT00530000063646.b	ENSGT00940000162404 #25	ENSGT00860000135639	ENSGT00950000182916.a.b.a.a.a.b.b #26	ENSGT00530000063926.b #27	ENSGT00390000013719 #28	ENSGT00390000012078.a.b #29	ENSGT00950000182915.b.b.a.a #30	ENSGT00390000006387 #31	ENSGT00390000004872 #32	ENSGT00940000158116 #33	ENSGT00940000161856.d #34	ENSGT00390000002634.a #35
Shrew mouse	MODERN SPECIES	12	Palm3 (MGP_PahariEiJ_G0022892) #7	Il27ra (MGP_PahariEiJ_G0022893) #8	Rln3 (MGP_PahariEiJ_G0022894) #9	MGP_PahariEiJ_G0022895 #10	MGP_PahariEiJ_G0022896 #11	Rfx1 (MGP_PahariEiJ_G0022897) #12	Dcaf15 (MGP_PahariEiJ_G0022898) #13	Podnl1 (MGP_PahariEiJ_G0022899) #14	Cc2d1a (MGP_PahariEiJ_G0022900) #15	Brme1 (MGP_PahariEiJ_G0022901) #16	Nanos3 (MGP_PahariEiJ_G0022902) #17	Zswim4 (MGP_PahariEiJ_G0022903) #18	D8Ertd738e (MGP_PahariEiJ_G0022904) #19	Mri1 (MGP_PahariEiJ_G0022905) #20	Ccdc130 (MGP_PahariEiJ_G0022906) #21	Cacna1a (MGP_PahariEiJ_G0022907) #22	Ier2 (MGP_PahariEiJ_G0022908) #23	Nacc1 (MGP_PahariEiJ_G0022909) #24	Lyl1 (MGP_PahariEiJ_G0022911) #25	Nfix (MGP_PahariEiJ_G0022912) #26	Dand5 (MGP_PahariEiJ_G0022913) #27	Gadd45gip1 (MGP_PahariEiJ_G0022914) #28	Rad23a (MGP_PahariEiJ_G0022915) #29	Calr (MGP_PahariEiJ_G0022916) #30	Farsa (MGP_PahariEiJ_G0022917) #31	Syce2 (MGP_PahariEiJ_G0022918) #32	Gcdh (MGP_PahariEiJ_G0022919) #33	Klf1 (MGP_PahariEiJ_G0022920) #34	Dnase2a (MGP_PahariEiJ_G0022921) #35	Mast1 (MGP_PahariEiJ_G0022922) #36	MGP_PahariEiJ_G0022923 #37
Mus_A	ANCESTRAL SPECIES	8	ENSGT00390000009016 #7	ENSGT00700000104610 #8	ENSGT00940000154396.b.a #9	ENSGT00950000183929 #10	ENSGT00900000143265 #11	ENSGT01050000244879.a.b #12	ENSGT00390000011987 #13	ENSGT00940000162059 #14	ENSGT00390000009595.b #15	ENSGT00390000016855 #16	ENSGT00950000183135.A.b #17	ENSGT00940000162102 #18	ENSGT00390000011740 #19	ENSGT00390000013732 #20	ENSGT00530000063615.b #21	ENSGT00940000156518.C #22	ENSGT00900000141021.b.b #23	ENSGT00940000159327 #24	ENSGT00530000063646.b	ENSGT00940000162404 #25	ENSGT00860000135639	ENSGT00950000182916.a.b.a.a.a.b.b #26	ENSGT00530000063926.b #27	ENSGT00390000013719 #28	ENSGT00390000012078.a.b #29	ENSGT00950000182915.b.b.a.a #30	ENSGT00390000006387 #31	ENSGT00390000004872 #32	ENSGT00940000158116 #33	ENSGT00940000161856.d #34	ENSGT00390000002634.a #35
Mus_B	ANCESTRAL SPECIES	6	ENSGT00390000009016 #7	ENSGT00700000104610 #8	ENSGT00940000154396.b.a #9	ENSGT00950000183929 #10	ENSGT00900000143265 #11	ENSGT01050000244879.a.b #12	ENSGT00390000011987 #13	ENSGT00940000162059 #14	ENSGT00390000009595.b #15	ENSGT00390000016855 #16	ENSGT00950000183135.A.b #17	ENSGT00940000162102 #18	ENSGT00390000011740 #19	ENSGT00390000013732 #20	ENSGT00530000063615.b #21	ENSGT00940000156518.C #22	ENSGT00900000141021.b.b #23	ENSGT00940000159327 #24	ENSGT00530000063646.b	ENSGT00940000162404 #25	ENSGT00860000135639	ENSGT00950000182916.a.b.a.a.a.b.b #26	ENSGT00530000063926.b #27	ENSGT00390000013719 #28	ENSGT00390000012078.a.b #29	ENSGT00950000182915.b.b.a.a #30	ENSGT00390000006387 #31	ENSGT00390000004872 #32	ENSGT00940000158116 #33	ENSGT00940000161856.d #34	ENSGT00390000002634.a #35
Mus_C	ANCESTRAL SPECIES	5	ENSGT00390000009016 #7	ENSGT00700000104610 #8	ENSGT00940000154396.b.a #9	ENSGT00950000183929 #10	ENSGT00900000143265 #11	ENSGT01050000244879.a.b #12	ENSGT00390000011987 #13	ENSGT00940000162059 #14	ENSGT00390000009595.b #15	ENSGT00390000016855 #16	ENSGT00950000183135.A.b #17	ENSGT00940000162102 #18	ENSGT00390000011740 #19	ENSGT00390000013732 #20	ENSGT00530000063615.b #21	ENSGT00940000156518.C #22	ENSGT00900000141021.b.b #23	ENSGT00940000159327 #24	ENSGT00530000063646.b	ENSGT00940000162404 #25	ENSGT00860000135639	ENSGT00950000182916.a.b.a.a.a.b.b #26	ENSGT00530000063926.b #27	ENSGT00390000013719 #28	ENSGT00390000012078.a.b #29	ENSGT00950000182915.b.b.a.a #30	ENSGT00940000157455.z	ENSGT00390000006387 #31	ENSGT00390000004872 #32	ENSGT00940000158116 #33	ENSGT00940000161856.d #34
Steppe mouse	MODERN SPECIES	2936	ENSMSIG00000012685	Palm3 (ENSMSIG00000012709) #7	Il27ra (ENSMSIG00000012734) #8	Rln3 (ENSMSIG00000012772) #9	ENSMSIG00000012780 #11	Rfx1 (ENSMSIG00000012789) #12	Dcaf15 (ENSMSIG00000012945) #13	Podnl1 (ENSMSIG00000012995) #14	Cc2d1a (ENSMSIG00000013019) #15	Brme1 (ENSMSIG00000013081) #16	Nanos3 (ENSMSIG00000013144) #17	Zswim4 (ENSMSIG00000013176) #18	D8Ertd738e (ENSMSIG00000013244) #19	Mri1 (ENSMSIG00000013255) #20	Ccdc130 (ENSMSIG00000013278) #21	Cacna1a (ENSMSIG00000013335) #22
spretus	MODERN SPECIES	17	Palm3 (MGP_SPRETEiJ_G0032404) #7	Il27ra (MGP_SPRETEiJ_G0032405) #8	Rln3 (MGP_SPRETEiJ_G0032406) #9	Gm10643 (MGP_SPRETEiJ_G0032407) #10	MGP_SPRETEiJ_G0032408 #11	Rfx1 (MGP_SPRETEiJ_G0032409) #12	Dcaf15 (MGP_SPRETEiJ_G0032410) #13	Podnl1 (MGP_SPRETEiJ_G0032411) #14	Cc2d1a (MGP_SPRETEiJ_G0032412) #15	Brme1 (MGP_SPRETEiJ_G0032413) #16	Nanos3 (MGP_SPRETEiJ_G0032414) #17	Zswim4 (MGP_SPRETEiJ_G0032415) #18	D8Ertd738e (MGP_SPRETEiJ_G0032416) #19	Mri1 (MGP_SPRETEiJ_G0032417) #20	Ccdc130 (MGP_SPRETEiJ_G0032418) #21	Cacna1a (MGP_SPRETEiJ_G0032419) #22	Ier2 (MGP_SPRETEiJ_G0032420) #23	MGP_SPRETEiJ_G0032421 #24	Trmt1 (MGP_SPRETEiJ_G0032422)	Nfix (MGP_SPRETEiJ_G0032423) #26	Lyl1 (MGP_SPRETEiJ_G0032424) #25	MGP_SPRETEiJ_G0032425	Dand5 (MGP_SPRETEiJ_G0032426) #27	Gadd45gip1 (MGP_SPRETEiJ_G0032427) #28	Rad23a (MGP_SPRETEiJ_G0032428) #29	Calr (MGP_SPRETEiJ_G0032429) #30	MGP_SPRETEiJ_G0032430	Farsa (MGP_SPRETEiJ_G0032431) #31	Syce2 (MGP_SPRETEiJ_G0032432) #32	Gcdh (MGP_SPRETEiJ_G0032433) #33	Klf1 (MGP_SPRETEiJ_G0032434) #34
Mouse	MODERN SPECIES	17	Misp3 (ENSMUSG00000074217)	Palm3 (ENSMUSG00000047986) #7	Il27ra (ENSMUSG00000005465) #8	Rln3 (ENSMUSG00000045232) #9	Gm10643 (ENSMUSG00000074215) #10	Rfx1 (ENSMUSG00000031706) #12	Dcaf15 (ENSMUSG00000037103) #13	Podnl1 (ENSMUSG00000012889) #14	Cc2d1a (ENSMUSG00000036686) #15	Brme1 (ENSMUSG00000008129) #16	Nanos3 (ENSMUSG00000056155) #17	Zswim4 (ENSMUSG00000035671) #18	D8Ertd738e (ENSMUSG00000019362) #19	Mri1 (ENSMUSG00000004996) #20	Ccdc130 (ENSMUSG00000004994) #21	Cacna1a (ENSMUSG00000034656) #22	Ier2 (ENSMUSG00000053560) #23	Nacc1 (ENSMUSG00000001910) #24	Trmt1 (ENSMUSG00000001909)	Nfix (ENSMUSG00000001911) #26	Lyl1 (ENSMUSG00000034041) #25	Dand5 (ENSMUSG00000053226) #27	Gadd45gip1 (ENSMUSG00000033751) #28	Rad23a (ENSMUSG00000003813) #29	Calr (ENSMUSG00000003814) #30	Farsa (ENSMUSG00000003808) #31	Syce2 (ENSMUSG00000003824) #32	Gcdh (ENSMUSG00000003809) #33	Klf1 (ENSMUSG00000054191) #34	Dnase2a (ENSMUSG00000003812) #35	Mast1 (ENSMUSG00000053693) #36
Ryukyu mouse	MODERN SPECIES	17	Palm3 (MGP_CAROLIEiJ_G0031286) #7	Il27ra (MGP_CAROLIEiJ_G0031287) #8	Rln3 (MGP_CAROLIEiJ_G0031288) #9	MGP_CAROLIEiJ_G0031289 #10	MGP_CAROLIEiJ_G0031290 #11	Rfx1 (MGP_CAROLIEiJ_G0031291) #12	Dcaf15 (MGP_CAROLIEiJ_G0031292) #13	Podnl1 (MGP_CAROLIEiJ_G0031293) #14	Cc2d1a (MGP_CAROLIEiJ_G0031294) #15	Brme1 (MGP_CAROLIEiJ_G0031295) #16	Nanos3 (MGP_CAROLIEiJ_G0031296) #17	Zswim4 (MGP_CAROLIEiJ_G0031297) #18	D8Ertd738e (MGP_CAROLIEiJ_G0031298) #19	Mri1 (MGP_CAROLIEiJ_G0031299) #20	MGP_CAROLIEiJ_G0031300 #21	Cacna1a (MGP_CAROLIEiJ_G0031301) #22	Ier2 (MGP_CAROLIEiJ_G0031302) #23	Nacc1 (MGP_CAROLIEiJ_G0031303) #24	Trmt1 (MGP_CAROLIEiJ_G0031304)	Nfix (MGP_CAROLIEiJ_G0031305) #26	Lyl1 (MGP_CAROLIEiJ_G0031306) #25	MGP_CAROLIEiJ_G0031307	Dand5 (MGP_CAROLIEiJ_G0031308) #27	Gadd45gip1 (MGP_CAROLIEiJ_G0031309) #28	Rad23a (MGP_CAROLIEiJ_G0031310) #29	Calr (MGP_CAROLIEiJ_G0031311) #30	Farsa (MGP_CAROLIEiJ_G0031312) #31	Syce2 (MGP_CAROLIEiJ_G0031313) #32	Gcdh (MGP_CAROLIEiJ_G0031314) #33	Klf1 (MGP_CAROLIEiJ_G0031315) #34	Dnase2a (MGP_CAROLIEiJ_G0031316) #35
Rat	MODERN SPECIES	10	Samd1 (ENSRNOG00000065861)	LOC686013 (ENSRNOG00000005533)	Misp3 (ENSRNOG00000005619)	Il27ra (ENSRNOG00000005729) #7	Il27ra (ENSRNOG00000005747) #8	Rln3 (ENSRNOG00000005911) #9	Rfx1 (ENSRNOG00000006049) #12	Dcaf15 (ENSRNOG00000006551) #13	Podnl1 (ENSRNOG00000006741) #14	Cc2d1a (ENSRNOG00000006747) #15	Brme1 (ENSRNOG00000025796) #16	Nanos3 (ENSRNOG00000031593) #17	LOC288913 (ENSRNOG00000049931) #19	Mri1 (ENSRNOG00000026211) #20	Yju2b (ENSRNOG00000008319) #21	Cacna1a (ENSRNOG00000052707) #22	Ier2 (ENSRNOG00000067274) #23	Nacc1 (ENSRNOG00000002864) #24	Trmt1 (ENSRNOG00000002914)	Lyl1 (ENSRNOG00000002950) #25	Nfix (ENSRNOG00000002983) #26	Dand5 (ENSRNOG00000033368) #27	Gadd45gip1 (ENSRNOG00000003011) #28	Rad23a (ENSRNOG00000003026) #29	Calr (ENSRNOG00000003029) #30	Farsa (ENSRNOG00000003149) #31	Gcdh (ENSRNOG00000003307) #33	Klf1 (ENSRNOG00000003443) #34	Dnase2 (ENSRNOG00000023830) #35	MAST1 (ENSRNOG00000003469) #36	Rtbdn (ENSRNOG00000043215) #37
Cricetidae	ANCESTRAL SPECIES	7	ENSGT00390000009916	ENSGT00940000154739.A	ENSGT00390000009016 #7	ENSGT00700000104610 #8	ENSGT00940000154396.b.a #9	ENSGT01050000244879.a.b #12	ENSGT00390000011987 #13	ENSGT00940000162059 #14	ENSGT00390000009595.b #15	ENSGT00390000016855 #16	ENSGT00950000183135.A.b #17	ENSGT00940000162102 #18	ENSGT00390000011740 #19	ENSGT00390000013732 #20	ENSGT00530000063615.b #21	ENSGT00940000156518.C #22	ENSGT00900000141021.b.b #23	ENSGT00940000159327 #24	ENSGT00530000063646.b	ENSGT00940000162404 #25	ENSGT00860000135639	ENSGT00950000182916.a.b.a.a.a.b.b #26	ENSGT00530000063926.b #27	ENSGT00390000013719 #28	ENSGT00390000012078.a.b #29	ENSGT00950000182915.b.b.a.a #30	ENSGT00390000006387 #31	ENSGT00390000004872 #32	ENSGT00940000158116 #33	ENSGT00940000161856 #34	ENSGT00390000002634.a #35
Cricetinae	ANCESTRAL SPECIES	40	ENSGT00390000009916	ENSGT00940000154739.A	ENSGT00390000009016 #7	ENSGT00700000104610 #8	ENSGT00940000154396.b.a #9	ENSGT01050000244879.a.b #12	ENSGT00390000011987 #13	ENSGT00940000162059 #14	ENSGT00390000009595.b #15	ENSGT00390000016855 #16	ENSGT00950000183135.A.b #17	ENSGT00940000162102 #18	ENSGT00390000011740 #19	ENSGT00390000013732 #20	ENSGT00530000063615.b #21	ENSGT00940000156518.C #22	ENSGT00900000141021.b.b #23	ENSGT00940000159327 #24	ENSGT00530000063646.b	ENSGT00940000162404 #25	ENSGT00950000182916.a.b.a.a.a.b.b #26	ENSGT00530000063926.b #27	ENSGT00390000013719 #28	ENSGT00390000012078.a.b #29	ENSGT00950000182915.b.b.a.a #30	ENSGT00390000006387 #31	ENSGT00390000004872 #32	ENSGT00940000158116 #33	ENSGT00940000161856 #34	ENSGT00390000002634.a #35	ENSGT00940000157700 #36
Chinese hamster chok1gshd	MODERN SPECIES	347	1700067K01Rik (ENSCGRG00001015825)	Misp3 (ENSCGRG00001015443)	Palm3 (ENSCGRG00001015020) #7	Il27ra (ENSCGRG00001019895) #8	Rln3 (ENSCGRG00001018325) #9	Rfx1 (ENSCGRG00001011068) #12	Dcaf15 (ENSCGRG00001023898) #13	Podnl1 (ENSCGRG00001020503) #14	Cc2d1a (ENSCGRG00001014304) #15	Brme1 (ENSCGRG00001007024) #16	Nanos3 (ENSCGRG00001023851) #17	Zswim4 (ENSCGRG00001022171) #18	D8Ertd738e (ENSCGRG00001019898) #19	MRI1 (ENSCGRG00001015655) #20	Ccdc130 (ENSCGRG00001021573) #21	Cacna1a (ENSCGRG00001015728) #22	Ier2 (ENSCGRG00001015864) #23	Nacc1 (ENSCGRG00001016498) #24	Trmt1 (ENSCGRG00001022594)	Lyl1 (ENSCGRG00001020161) #25	Nfix (ENSCGRG00001013186) #26	Dand5 (ENSCGRG00001000588) #27	Gadd45gip1 (ENSCGRG00001000298) #28	Rad23a (ENSCGRG00001020853) #29	Calr (ENSCGRG00001020181) #30	Farsa (ENSCGRG00001019769) #31	Syce2 (ENSCGRG00001013520) #32	Gcdh (ENSCGRG00001012582) #33	Klf1 (ENSCGRG00001011893) #34	Dnase2a (ENSCGRG00001011489) #35	Mast1 (ENSCGRG00001012818) #36
Golden Hamster	MODERN SPECIES	877																Cacna1a (ENSMAUG00000008037) #22	Nacc1 (ENSMAUG00000004663) #24	Trmt1 (ENSMAUG00000011134)	Nfix (ENSMAUG00000018106) #26	Dand5 (ENSMAUG00000020203) #27	Gadd45gip1 (ENSMAUG00000001145) #28	Rad23a (ENSMAUG00000009327) #29	Farsa (ENSMAUG00000009188) #31	ENSMAUG00000000609	Syce2 (ENSMAUG00000015586) #32	Gcdh (ENSMAUG00000012276) #33	Klf1 (ENSMAUG00000021937) #34	Dnase2a (ENSMAUG00000012610) #35	Mast1 (ENSMAUG00000001337) #36	ENSMAUG00000021740	Prdx2 (ENSMAUG00000005262)
Cricetidae_B	ANCESTRAL SPECIES	5	ENSGT00390000009916	ENSGT00940000154739.A	ENSGT00390000009016 #7	ENSGT00700000104610 #8	ENSGT00940000154396.b.a #9	ENSGT01050000244879.a.b #12	ENSGT00390000011987 #13	ENSGT00940000162059 #14	ENSGT00390000009595.b #15	ENSGT00390000016855 #16	ENSGT00950000183135.A.b #17	ENSGT00940000162102 #18	ENSGT00390000011740 #19	ENSGT00390000013732 #20	ENSGT00530000063615.b #21	ENSGT00940000156518.C #22	ENSGT00900000141021.b.b #23	ENSGT00940000159327 #24	ENSGT00530000063646.b	ENSGT00940000162404 #25	ENSGT00860000135639	ENSGT00950000182916.a.b.a.a.a.b.b #26	ENSGT00530000063926.b #27	ENSGT00390000013719 #28	ENSGT00390000012078.a.b #29	ENSGT00950000182915.b.b.a.a #30	ENSGT00390000006387 #31	ENSGT00390000004872 #32	ENSGT00940000158116 #33	ENSGT00940000161856 #34	ENSGT00390000002634.a #35
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	18	1700067K01Rik (ENSPEMG00000008680)	Misp3 (ENSPEMG00000017574)	Palm3 (ENSPEMG00000000570) #7	Il27ra (ENSPEMG00000011917) #8	Rln3 (ENSPEMG00000005926) #9	Rfx1 (ENSPEMG00000014245) #12	Dcaf15 (ENSPEMG00000012514) #13	Podnl1 (ENSPEMG00000018883) #14	Brme1 (ENSPEMG00000000718) #16	Nanos3 (ENSPEMG00000030151) #17	Zswim4 (ENSPEMG00000009048) #18	D8Ertd738e (ENSPEMG00000027807) #19	Mri1 (ENSPEMG00000006105) #20	Ccdc130 (ENSPEMG00000013906) #21	ENSPEMG00000031086 #22	ENSPEMG00000030103 #22	Ier2 (ENSPEMG00000005842) #23	ENSPEMG00000028317	Nacc1 (ENSPEMG00000003314) #24	Trmt1 (ENSPEMG00000016247)	Lyl1 (ENSPEMG00000026641) #25	ENSPEMG00000029305	Nfix (ENSPEMG00000011765) #26	Dand5 (ENSPEMG00000017061) #27	Gadd45gip1 (ENSPEMG00000011904) #28	Rad23a (ENSPEMG00000006140) #29	Calr (ENSPEMG00000001949) #30	Farsa (ENSPEMG00000012560) #31	Syce2 (ENSPEMG00000016357) #32	Gcdh (ENSPEMG00000009103) #33	Klf1 (ENSPEMG00000017635) #34
Northern American deer mouse	MODERN SPECIES	18	ENSPEMG00000017586	1700067K01Rik (ENSPEMG00000008680)	Misp3 (ENSPEMG00000017574)	Palm3 (ENSPEMG00000000570) #7	Il27ra (ENSPEMG00000011917) #8	Rln3 (ENSPEMG00000005926) #9	Rfx1 (ENSPEMG00000014245) #12	Dcaf15 (ENSPEMG00000012514) #13	Podnl1 (ENSPEMG00000018883) #14	Brme1 (ENSPEMG00000000718) #16	Nanos3 (ENSPEMG00000030151) #17	Zswim4 (ENSPEMG00000009048) #18	D8Ertd738e (ENSPEMG00000027807) #19	Mri1 (ENSPEMG00000006105) #20	Ccdc130 (ENSPEMG00000013906) #21	ENSPEMG00000031086 #22	ENSPEMG00000030103 #22	Ier2 (ENSPEMG00000005842) #23	ENSPEMG00000028317	Nacc1 (ENSPEMG00000003314) #24	Trmt1 (ENSPEMG00000016247)	Lyl1 (ENSPEMG00000026641) #25	ENSPEMG00000029305	Nfix (ENSPEMG00000011765) #26	Dand5 (ENSPEMG00000017061) #27	Gadd45gip1 (ENSPEMG00000011904) #28	Rad23a (ENSPEMG00000006140) #29	Calr (ENSPEMG00000001949) #30	Farsa (ENSPEMG00000012560) #31	Syce2 (ENSPEMG00000016357) #32	Gcdh (ENSPEMG00000009103) #33
Prairie vole	MODERN SPECIES	173	Palm3 (ENSMOCG00000019944) #7	Il27ra (ENSMOCG00000015066) #8	Rln3 (ENSMOCG00000011994) #9	Rfx1 (ENSMOCG00000009461) #12	Dcaf15 (ENSMOCG00000017126) #13	ENSMOCG00000019700	Podnl1 (ENSMOCG00000019920) #14	Cc2d1a (ENSMOCG00000009561) #15	Brme1 (ENSMOCG00000019462) #16	Nanos3 (ENSMOCG00000000059) #17	Zswim4 (ENSMOCG00000013310) #18	D8Ertd738e (ENSMOCG00000000560) #19	Mri1 (ENSMOCG00000009591) #20	ENSMOCG00000009861 #21	ENSMOCG00000010484	Cacna1a (ENSMOCG00000014432) #22	Ier2 (ENSMOCG00000001243) #23	ENSMOCG00000018653 #24	Trmt1 (ENSMOCG00000015895)	Lyl1 (ENSMOCG00000000199) #25	Nfix (ENSMOCG00000002641) #26	ENSMOCG00000000206
Upper Galilee mountains blind mole rat	MODERN SPECIES	1738	1700067K01Rik (ENSNGAG00000022697)	Misp3 (ENSNGAG00000007990)	Palm3 (ENSNGAG00000000694) #7	Il27ra (ENSNGAG00000012078) #8	Rln3 (ENSNGAG00000014225) #9	Rfx1 (ENSNGAG00000015296) #12	Dcaf15 (ENSNGAG00000009961) #13	Podnl1 (ENSNGAG00000000890) #14	Cc2d1a (ENSNGAG00000020333) #15	ENSNGAG00000007857 #16	Nanos3 (ENSNGAG00000020486) #17	Zswim4 (ENSNGAG00000001121) #18	D8Ertd738e (ENSNGAG00000016091) #19	Mri1 (ENSNGAG00000022102) #20	ENSNGAG00000011971 #21	Cacna1a (ENSNGAG00000000916) #22	Nacc1 (ENSNGAG00000021982) #24	Trmt1 (ENSNGAG00000022486)	Lyl1 (ENSNGAG00000014673) #25	Nfix (ENSNGAG00000016724) #26	Dand5 (ENSNGAG00000021187) #27	Gadd45gip1 (ENSNGAG00000022030) #28	Rad23a (ENSNGAG00000022186) #29	Calr (ENSNGAG00000011286) #30	Farsa (ENSNGAG00000018353) #31	Syce2 (ENSNGAG00000023150) #32	Gcdh (ENSNGAG00000022070) #33	Klf1 (ENSNGAG00000022931) #34	Dnase2a (ENSNGAG00000022792) #35	Mast1 (ENSNGAG00000002377) #36	Rtbdn (ENSNGAG00000011358) #37
Lesser Egyptian jerboa	MODERN SPECIES	234	Prkaca (ENSJJAG00000021581)	1700067K01Rik (ENSJJAG00000019559)	Misp3 (ENSJJAG00000019250)	ENSJJAG00000019152 #7	Il27ra (ENSJJAG00000016724) #8	Rln3 (ENSJJAG00000016021) #9	Rfx1 (ENSJJAG00000007901) #12	Dcaf15 (ENSJJAG00000020594) #13	Podnl1 (ENSJJAG00000019479) #14	Cc2d1a (ENSJJAG00000011117) #15	Nanos3 (ENSJJAG00000000545) #17	Zswim4 (ENSJJAG00000019795) #18	D8Ertd738e (ENSJJAG00000019133) #19	Mri1 (ENSJJAG00000018104) #20	ENSJJAG00000015193 #21	Cacna1a (ENSJJAG00000020086) #22	Ier2 (ENSJJAG00000015305) #23	ENSJJAG00000012119	Nacc1 (ENSJJAG00000000199) #24	Trmt1 (ENSJJAG00000017154)	Lyl1 (ENSJJAG00000015977) #25	Nfix (ENSJJAG00000012047) #26	Dand5 (ENSJJAG00000011222) #27	Rad23a (ENSJJAG00000000606) #29	Calr (ENSJJAG00000000115) #30	Syce2 (ENSJJAG00000021380) #32	Gcdh (ENSJJAG00000018993) #33	Klf1 (ENSJJAG00000004209) #34	Dnase2a (ENSJJAG00000000087) #35	ENSJJAG00000020016 #36	ENSJJAG00000019577
Kangaroo rat	MODERN SPECIES	502	Ddx39a (ENSDORG00000013041)	Adgre5 (ENSDORG00000013039)	ENSDORG00000029791	ENSDORG00000014805	Asf1b (ENSDORG00000029005)	Prkaca (ENSDORG00000014936)	1700067K01Rik (ENSDORG00000027830)	Il27ra (ENSDORG00000013261) #8	Rln3 (ENSDORG00000013264) #9	Rfx1 (ENSDORG00000016506) #12	Cc2d1a (ENSDORG00000016499) #15	Zswim4 (ENSDORG00000016139) #18	D8Ertd738e (ENSDORG00000023743) #19	Mri1 (ENSDORG00000010875) #20	Ccdc130 (ENSDORG00000010877) #21	Cacna1a (ENSDORG00000010862) #22	Nacc1 (ENSDORG00000003988) #24	Trmt1 (ENSDORG00000014298)	Lyl1 (ENSDORG00000029482) #25	Nfix (ENSDORG00000012235) #26	Dand5 (ENSDORG00000007059) #27	Rad23a (ENSDORG00000010116) #29	Calr (ENSDORG00000010117) #30	Farsa (ENSDORG00000010118) #31	Syce2 (ENSDORG00000009022) #32	Gcdh (ENSDORG00000009020) #33	Klf1 (ENSDORG00000009018) #34	Dnase2a (ENSDORG00000009016) #35	ENSDORG00000009013 #36	Rnaseh2a (ENSDORG00000009008)	Prdx2 (ENSDORG00000009005)
Rodentia_A	ANCESTRAL SPECIES	16	ENSGT00390000009916	ENSGT00940000154739.A	ENSGT00390000009016 #7	ENSGT00700000104610 #8	ENSGT00940000154396.b.a #9	ENSGT01050000244879.a.b #12	ENSGT00390000011987 #13	ENSGT00940000162059 #14	ENSGT00390000009595.b #15	ENSGT00390000016855 #16	ENSGT00950000183135.A.b #17	ENSGT00940000162102 #18	ENSGT00390000011740 #19	ENSGT00390000013732 #20	ENSGT00530000063615.b #21	ENSGT00940000156518.C #22	ENSGT00900000141021.b.b #23	ENSGT00940000163101	ENSGT00940000159327 #24	ENSGT00530000063646.b	ENSGT00940000162404 #25	ENSGT00860000135639	ENSGT00950000182916.a.b.a.a.a.b.b #26	ENSGT00950000185200	ENSGT00530000063926.b #27	ENSGT00390000013719 #28	ENSGT00390000012078.a.b #29	ENSGT00950000182915.b.b.a.a #30	ENSGT00390000006387 #31	ENSGT00390000004872 #32	ENSGT00940000158116 #33
Sciuridae	ANCESTRAL SPECIES	20	ENSGT00390000009916	ENSGT00940000154739.A	ENSGT00390000009016 #7	ENSGT00700000104610 #8	ENSGT00940000154396.b.a #9	ENSGT01050000244879.a.b #12	ENSGT00390000011987 #13	ENSGT00940000162059 #14	ENSGT00390000009595.b #15	ENSGT00390000016855 #16	ENSGT00950000183135.A.b #17	ENSGT00940000162102 #18	ENSGT00390000011740 #19	ENSGT00390000013732 #20	ENSGT00530000063615.b #21	ENSGT00940000156518.C #22	ENSGT00900000141021.b.b #23	ENSGT00940000163101	ENSGT00940000159327 #24	ENSGT00530000063646.b	ENSGT00940000162404 #25	ENSGT00860000135639	ENSGT00950000182916.a.b.a.a.a.b.b #26	ENSGT00530000063926.b #27	ENSGT00390000013719 #28	ENSGT00390000012078.a.b #29	ENSGT00950000182915.b.b.a.a #30	ENSGT00390000006387 #31	ENSGT00390000004872 #32	ENSGT00940000158116 #33	ENSGT00940000161856 #34
Marmotini	ANCESTRAL SPECIES	41	ENSGT00390000009916	ENSGT00940000154739.A	ENSGT00390000009016 #7	ENSGT00700000104610 #8	ENSGT00940000154396.b.a #9	ENSGT01050000244879.a.b #12	ENSGT00390000011987 #13	ENSGT00940000162059 #14	ENSGT00390000009595.b #15	ENSGT00390000016855 #16	ENSGT00950000183135.A.b #17	ENSGT00940000162102 #18	ENSGT00390000011740 #19	ENSGT00390000013732 #20	ENSGT00530000063615.b #21	ENSGT00940000156518.C #22	ENSGT00900000141021.b.b #23	ENSGT00940000163101	ENSGT00940000159327 #24	ENSGT00530000063646.b	ENSGT00940000162404 #25	ENSGT00860000135639	ENSGT00950000182916.a.b.a.a.a.b.b #26	ENSGT00530000063926.b #27	ENSGT00390000013719 #28	ENSGT00390000012078.a.b #29	ENSGT00950000182915.b.b.a.a #30	ENSGT00390000006387 #31	ENSGT00390000004872 #32	ENSGT00940000158116 #33	ENSGT00940000161856 #34
Marmotini_b	ANCESTRAL SPECIES	40	ENSGT00390000009916	ENSGT00940000154739.A	ENSGT00390000009016 #7	ENSGT00700000104610 #8	ENSGT00940000154396.b.a #9	ENSGT01050000244879.a.b #12	ENSGT00390000011987 #13	ENSGT00940000162059 #14	ENSGT00390000009595.b #15	ENSGT00390000016855 #16	ENSGT00950000183135.A.b #17	ENSGT00940000162102 #18	ENSGT00390000011740 #19	ENSGT00390000013732 #20	ENSGT00530000063615.b #21	ENSGT00940000156518.C #22	ENSGT00900000141021.b.b #23	ENSGT00940000163101	ENSGT00940000159327 #24	ENSGT00530000063646.b	ENSGT00940000162404 #25	ENSGT00860000135639	ENSGT00950000182916.a.b.a.a.a.b.b #26	ENSGT00530000063926.b #27	ENSGT00390000013719 #28	ENSGT00390000012078.a.b #29	ENSGT00950000182915.b.b.a.a #30	ENSGT00390000006387 #31	ENSGT00390000004872 #32	ENSGT00940000158116 #33	ENSGT00940000161856 #34
Arctic ground squirrel	MODERN SPECIES	217	C19orf67 (ENSUPAG00010011838)	MISP3 (ENSUPAG00010011828)	PALM3 (ENSUPAG00010011814) #7	IL27RA (ENSUPAG00010011800) #8	RLN3 (ENSUPAG00010011794) #9	RFX1 (ENSUPAG00010011748) #12	DCAF15 (ENSUPAG00010011735) #13	PODNL1 (ENSUPAG00010011723) #14	CC2D1A (ENSUPAG00010011706) #15	BRME1 (ENSUPAG00010011699) #16	NANOS3 (ENSUPAG00010011697) #17	ZSWIM4 (ENSUPAG00010011666) #18	C19orf53 (ENSUPAG00010011656) #19	MRI1 (ENSUPAG00010011651) #20	YJU2B (ENSUPAG00010011639) #21	CACNA1A (ENSUPAG00010008388) #22	IER2 (ENSUPAG00010008375) #23	STX10 (ENSUPAG00010008362)	NACC1 (ENSUPAG00010008354) #24	TRMT1 (ENSUPAG00010008343)	LYL1 (ENSUPAG00010008333) #25	ENSUPAG00010008329	NFIX (ENSUPAG00010008230) #26	DAND5 (ENSUPAG00010008227) #27	GADD45GIP1 (ENSUPAG00010008222) #28	RAD23A (ENSUPAG00010008197) #29	CALR (ENSUPAG00010008184) #30	FARSA (ENSUPAG00010008158) #31	SYCE2 (ENSUPAG00010008135) #32	GCDH (ENSUPAG00010008102) #33	KLF1 (ENSUPAG00010008092) #34
Squirrel	MODERN SPECIES	259	PRKACA (ENSSTOG00000002327)	C19orf67 (ENSSTOG00000001321)	PALM3 (ENSSTOG00000023133) #7	IL27RA (ENSSTOG00000008690) #8	RLN3 (ENSSTOG00000024302) #9	RFX1 (ENSSTOG00000025432) #12	DCAF15 (ENSSTOG00000024329) #13	PODNL1 (ENSSTOG00000021014) #14	CC2D1A (ENSSTOG00000019980) #15	BRME1 (ENSSTOG00000028732) #16	NANOS3 (ENSSTOG00000024797) #17	ZSWIM4 (ENSSTOG00000021055) #18	C19orf53 (ENSSTOG00000011602) #19	MRI1 (ENSSTOG00000020750) #20	YJU2B (ENSSTOG00000006281) #21	CACNA1A (ENSSTOG00000024862) #22	IER2 (ENSSTOG00000007900) #23	STX10 (ENSSTOG00000007880)	NACC1 (ENSSTOG00000007865) #24	TRMT1 (ENSSTOG00000012531)	LYL1 (ENSSTOG00000028401) #25	NFIX (ENSSTOG00000007848) #26	DAND5 (ENSSTOG00000016420) #27	GADD45GIP1 (ENSSTOG00000016419) #28	RAD23A (ENSSTOG00000024117) #29	CALR (ENSSTOG00000008774) #30	FARSA (ENSSTOG00000008748) #31	SYCE2 (ENSSTOG00000008737) #32	GCDH (ENSSTOG00000008724) #33	KLF1 (ENSSTOG00000021956) #34	DNASE2 (ENSSTOG00000008712) #35
Eurasian red squirrel	MODERN SPECIES	7	IL27RA (ENSSVLG00005025225) #8	RLN3 (ENSSVLG00005025204) #9	RFX1 (ENSSVLG00005025184) #12	DCAF15 (ENSSVLG00005025150) #13	PODNL1 (ENSSVLG00005025116) #14	ENSSVLG00005025075 #16	NANOS3 (ENSSVLG00005025060) #17	ZSWIM4 (ENSSVLG00005025031) #18	C19orf53 (ENSSVLG00005025010) #19	MRI1 (ENSSVLG00005025000) #20	YJU2B (ENSSVLG00005024977) #21	ENSSVLG00005024956	ENSSVLG00005024939	ENSSVLG00005024924	ENSSVLG00005024893	CACNA1A (ENSSVLG00005020388) #22	IER2 (ENSSVLG00005018745) #23	STX10 (ENSSVLG00005018658)	NACC1 (ENSSVLG00005018614) #24	TRMT1 (ENSSVLG00005018534)	LYL1 (ENSSVLG00005018485) #25	NFIX (ENSSVLG00005018211) #26	DAND5 (ENSSVLG00005018136) #27	GADD45GIP1 (ENSSVLG00005018098) #28	RAD23A (ENSSVLG00005018009) #29	CALR (ENSSVLG00005017951) #30	FARSA (ENSSVLG00005017880) #31	ENSSVLG00005017827 #32	GCDH (ENSSVLG00005017674) #33	KLF1 (ENSSVLG00005017619) #34	DNASE2 (ENSSVLG00005017585) #35
Hystricomorpha	ANCESTRAL SPECIES	55	ENSGT00390000009916	ENSGT00940000154739.A	ENSGT00390000009016 #7	ENSGT00700000104610 #8	ENSGT00940000154396.b.a #9	ENSGT01050000244879.a.b #12	ENSGT00390000011987 #13	ENSGT00940000162059 #14	ENSGT00390000009595.b #15	ENSGT00390000016855 #16	ENSGT00950000183135.A.b #17	ENSGT00940000162102 #18	ENSGT00390000011740 #19	ENSGT00390000013732 #20	ENSGT00530000063615.b #21	ENSGT00940000156518.C #22	ENSGT00900000141021.b.b #23	ENSGT00940000159327 #24	ENSGT00530000063646.b	ENSGT00940000162404 #25	ENSGT00950000182916.a.b.a.a.a.b.b #26	ENSGT00950000185200	ENSGT00530000063926.b #27	ENSGT00390000013719 #28	ENSGT00390000012078.a.b #29	ENSGT00950000182915.b.b.a.a.k.b #30	ENSGT00950000182915.b.b.a.a.l #30	ENSGT00390000006387 #31	ENSGT00390000004872 #32	ENSGT00940000158116 #33	ENSGT00940000161856 #34
Hystricomorpha_a	ANCESTRAL SPECIES	15	ENSGT00390000009916	ENSGT00940000154739.A	ENSGT00390000009016 #7	ENSGT00700000104610 #8	ENSGT00940000154396.b.a #9	ENSGT01050000244879.a.b #12	ENSGT00390000011987 #13	ENSGT00940000162059 #14	ENSGT00390000009595.b #15	ENSGT00390000016855 #16	ENSGT00950000183135.A.b #17	ENSGT00940000162102 #18	ENSGT00390000011740 #19	ENSGT00390000013732 #20	ENSGT00530000063615.b #21	ENSGT00940000156518.C #22	ENSGT00900000141021.b.b #23	ENSGT00940000159327 #24	ENSGT00530000063646.b	ENSGT00940000162404 #25	ENSGT00950000182916.a.b.a.a.a.b.b #26	ENSGT00530000063926.b #27	ENSGT00390000013719 #28	ENSGT00390000012078.a.b #29	ENSGT00950000182915.b.b.a.a.k.b #30	ENSGT00950000182915.b.b.a.a.l #30	ENSGT00390000006387 #31	ENSGT00390000004872 #32	ENSGT00940000158116 #33	ENSGT00940000161856 #34	ENSGT00390000002634.a #35
Guinea pig	MODERN SPECIES	42	ENSCPOG00000038479	TNNI2 (ENSCPOG00000008658)	SYT8 (ENSCPOG00000036706)	CTSD (ENSCPOG00000008493)	IFITM10 (ENSCPOG00000019284)	IL27RA (ENSCPOG00000013567) #8	RLN3 (ENSCPOG00000013564) #9	RFX1 (ENSCPOG00000010089) #12	DCAF15 (ENSCPOG00000010084) #13	PODNL1 (ENSCPOG00000021831) #14	CC2D1A (ENSCPOG00000004231) #15	NANOS3 (ENSCPOG00000020727) #17	C19orf53 (ENSCPOG00000013192) #19	MRI1 (ENSCPOG00000013191) #20	YJU2B (ENSCPOG00000006545) #21	CACNA1A (ENSCPOG00000025184) #22	NACC1 (ENSCPOG00000022222) #24	TRMT1 (ENSCPOG00000011754)	LYL1 (ENSCPOG00000036111) #25	NFIX (ENSCPOG00000022563) #26	RAD23A (ENSCPOG00000037407) #29	GADD45GIP1 (ENSCPOG00000024072) #28	CALR (ENSCPOG00000000791) #30	FARSA (ENSCPOG00000000787) #31	ENSCPOG00000033097 #32	GCDH (ENSCPOG00000027058) #33	KLF1 (ENSCPOG00000000784) #34	DNASE2 (ENSCPOG00000000783) #35	MAST1 (ENSCPOG00000000777) #36	RTBDN (ENSCPOG00000000774) #37	RNASEH2A (ENSCPOG00000038877)
Hystricomorpha_b	ANCESTRAL SPECIES	31	ENSGT00390000009916	ENSGT00940000154739.A	ENSGT00390000009016 #7	ENSGT00700000104610 #8	ENSGT00940000154396.b.a #9	ENSGT01050000244879.a.b #12	ENSGT00390000011987 #13	ENSGT00940000162059 #14	ENSGT00390000009595.b #15	ENSGT00390000016855 #16	ENSGT00950000183135.A.b #17	ENSGT00940000162102 #18	ENSGT00390000011740 #19	ENSGT00390000013732 #20	ENSGT00530000063615.b #21	ENSGT00940000156518.C #22	ENSGT00900000141021.b.b #23	ENSGT00940000159327 #24	ENSGT00530000063646.b	ENSGT00940000162404 #25	ENSGT00950000182916.a.b.a.a.a.b.b #26	ENSGT00530000063926.b #27	ENSGT00390000013719 #28	ENSGT00390000012078.a.b #29	ENSGT00950000182915.b.b.a.a.k.b #30	ENSGT00950000182915.b.b.a.a.l #30	ENSGT00390000006387 #31	ENSGT00390000004872 #32	ENSGT00940000158116 #33	ENSGT00940000161856 #34	ENSGT00390000002634.a #35
Long-tailed chinchilla	MODERN SPECIES	122	PRKACA (ENSCLAG00000015604)	C19orf67 (ENSCLAG00000014973)	PALM3 (ENSCLAG00000016217) #7	IL27RA (ENSCLAG00000013752) #8	RLN3 (ENSCLAG00000013074) #9	RFX1 (ENSCLAG00000013348) #12	DCAF15 (ENSCLAG00000015146) #13	PODNL1 (ENSCLAG00000013361) #14	CC2D1A (ENSCLAG00000012998) #15	ENSCLAG00000015002 #16	NANOS3 (ENSCLAG00000015139) #17	ZSWIM4 (ENSCLAG00000011642) #18	C19orf53 (ENSCLAG00000011489) #19	MRI1 (ENSCLAG00000013025) #20	YJU2B (ENSCLAG00000011790) #21	CACNA1A (ENSCLAG00000013282) #22	IER2 (ENSCLAG00000015309) #23	NACC1 (ENSCLAG00000016122) #24	TRMT1 (ENSCLAG00000015295)	LYL1 (ENSCLAG00000014483) #25	NFIX (ENSCLAG00000013479) #26	DAND5 (ENSCLAG00000011402) #27	GADD45GIP1 (ENSCLAG00000015799) #28	RAD23A (ENSCLAG00000016638) #29	CALR (ENSCLAG00000012923) #30	FARSA (ENSCLAG00000015489) #31	SYCE2 (ENSCLAG00000014420) #32	GCDH (ENSCLAG00000015590) #33	KLF1 (ENSCLAG00000013218) #34	DNASE2 (ENSCLAG00000012983) #35	MAST1 (ENSCLAG00000012224) #36
Degu	MODERN SPECIES	114	C19orf67 (ENSODEG00000010090)	MISP3 (ENSODEG00000009732)	PALM3 (ENSODEG00000008820) #7	IL27RA (ENSODEG00000009893) #8	RLN3 (ENSODEG00000009268) #9	RFX1 (ENSODEG00000011025) #12	DCAF15 (ENSODEG00000010421) #13	ENSODEG00000011425	PODNL1 (ENSODEG00000009051) #14	CC2D1A (ENSODEG00000009306) #15	NANOS3 (ENSODEG00000008907) #17	ZSWIM4 (ENSODEG00000009901) #18	C19orf53 (ENSODEG00000009270) #19	ENSODEG00000010083 #20	YJU2B (ENSODEG00000009976) #21	CACNA1A (ENSODEG00000009256) #22	IER2 (ENSODEG00000013532) #23	NACC1 (ENSODEG00000009255) #24	ENSODEG00000019786	TRMT1 (ENSODEG00000010323)	LYL1 (ENSODEG00000010992) #25	NFIX (ENSODEG00000010171) #26	ENSODEG00000010129	GADD45GIP1 (ENSODEG00000010728) #28	RAD23A (ENSODEG00000011287) #29	CALR (ENSODEG00000010711) #30	FARSA (ENSODEG00000010433) #31	ENSODEG00000010928 #32	GCDH (ENSODEG00000010247) #33	KLF1 (ENSODEG00000009692) #34	DNASE2 (ENSODEG00000009845) #35
Naked mole-rat female	MODERN SPECIES	21	ENSHGLG00000003524	ENSHGLG00000046535	NOTCH3 (ENSHGLG00000006380)	ENSHGLG00000004261	EPHX3 (ENSHGLG00000050720)	BRD4 (ENSHGLG00000004103)	AKAP8 (ENSHGLG00000006879)	AKAP8L (ENSHGLG00000019540)	ENSHGLG00000015009	RASAL3 (ENSHGLG00000014513)	PGLYRP2 (ENSHGLG00000006376)	CYP4F22 (ENSHGLG00000007762)	ENSHGLG00000010876	CYP4F3 (ENSHGLG00000005064)	ENSHGLG00000006444	ENSHGLG00000038601 #22
Lagomorpha	ANCESTRAL SPECIES																	ENSGT00940000156518.C #22
Pika	MODERN SPECIES	2622																ENSOPRG00000004000 #22	STX10 (ENSOPRG00000003956)	NACC1 (ENSOPRG00000003936) #24
Rabbit	MODERN SPECIES	715																CACNA1A (ENSOCUG00000011985) #22	ENSOCUG00000026440 #26
Tree shrew	MODERN SPECIES	1767																ENSTBEG00000002320 #22