Rodentia_A	ANCESTRAL SPECIES	16	ENSGT00390000003420.b #27	ENSGT00940000161213 #26	ENSGT00390000005318.a #25	ENSGT00390000004282 #24	ENSGT00950000183104.B.a.a #23	ENSGT00500000044957	ENSGT00390000003403	ENSGT00940000154660.a	ENSGT00950000182916.a.a	ENSGT00940000154201.a.a.b.d	ENSGT00500000044945.a	ENSGT01050000244887.B	ENSGT00940000161736 #19	ENSGT00940000161033 #20	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #21	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #22	ENSGT01030000234519.e.a.a.b.a.a.a ##22	ENSGT00940000162830	ENSGT00940000164313	ENSGT00950000183171.A.b.a.b	ENSGT00940000159037	ENSGT00940000160231	ENSGT00940000159915	ENSGT01100000263497.E.a.b	ENSGT00950000182964.a.b.b	ENSGT00940000160274	ENSGT00390000014000	ENSGT00940000159993	ENSGT00940000158753	ENSGT00510000047872	ENSGT00940000162661
Hystricomorpha	ANCESTRAL SPECIES	19	ENSGT01100000263497.E.a.b	ENSGT00940000159915	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00500000044957	ENSGT00390000003403	ENSGT00940000154660.a	ENSGT00950000182916.a.a	ENSGT00940000154201.a.a.b.d	ENSGT00500000044945.a	ENSGT01050000244887.B	ENSGT00940000161736 #19	ENSGT00940000161033 #20	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #21	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #22	ENSGT01030000234519.e.a.a.b.a.a.a ##22	ENSGT00950000183104.B.a.a #23	ENSGT00390000004282 #24	ENSGT00390000005318.a #25	ENSGT00940000161213 #26	ENSGT00390000003420.b #27	ENSGT01030000234559.a.a.a #28	ENSGT00950000183102.A.a #29	ENSGT00940000159258 #30	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000160775	ENSGT00940000162148	ENSGT00940000158364
Hystricomorpha_a	ANCESTRAL SPECIES	15	ENSGT00950000182964.a.b.b	ENSGT01100000263497.E.a.b	ENSGT00940000159915	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00500000044957	ENSGT00940000154660.a	ENSGT00950000182916.a.a	ENSGT00940000154201.a.a.b.d	ENSGT00500000044945.a	ENSGT01050000244887.B	ENSGT00940000161736 #19	ENSGT00940000161033 #20	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #21	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #22	ENSGT00950000183104.B.a.a #23	ENSGT00390000004282 #24	ENSGT00390000005318.a #25	ENSGT00940000161213 #26	ENSGT00390000003420.b #27	ENSGT01030000234559.a.a.a #28	ENSGT00950000183102.A.a #29	ENSGT00940000159258 #30	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000160775	ENSGT00940000162148	ENSGT00940000158364	ENSGT00940000159842
Guinea pig	MODERN SPECIES	288													ENSCPOG00000004974 #19	GNA11 (ENSCPOG00000036119) #20	TLE5 (ENSCPOG00000036640) #21	TLE2 (ENSCPOG00000004144) #22	FZR1 (ENSCPOG00000019570) #23	TEKTIP1 (ENSCPOG00000024460) #24	MFSD12 (ENSCPOG00000009074) #25	HMG20B (ENSCPOG00000010777) #26	GIPC3 (ENSCPOG00000023224) #27	TBXA2R (ENSCPOG00000031050) #28	CACTIN (ENSCPOG00000003880) #29	PIP5K1C (ENSCPOG00000001951) #30
Hystricomorpha_b	ANCESTRAL SPECIES	17	ENSGT00950000182964.a.b.b	ENSGT01100000263497.E.a.b	ENSGT00940000159915	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00500000044957	ENSGT00940000154660.a	ENSGT00950000182916.a.a	ENSGT00940000154201.a.a.b.d	ENSGT00500000044945.a	ENSGT01050000244887.B	ENSGT00940000161736 #19	ENSGT00940000161033 #20	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #21	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #22	ENSGT00950000182965.b.fb	ENSGT00950000183104.B.a.a #23	ENSGT00390000004282 #24	ENSGT00390000005318.a #25	ENSGT00940000161213 #26	ENSGT00390000003420.b #27	ENSGT01030000234559.a.a.a #28	ENSGT00950000183102.A.a #29	ENSGT00940000159258 #30	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000160775	ENSGT00940000162148	ENSGT00940000158364
Long-tailed chinchilla	MODERN SPECIES	202	LMNB2 (ENSCLAG00000007920)	GADD45B (ENSCLAG00000008923)	GNG7 (ENSCLAG00000009115)	DIRAS1 (ENSCLAG00000017925)	SGTA (ENSCLAG00000010647)	THOP1 (ENSCLAG00000015063)	DOHH (ENSCLAG00000007817)	SMIM24 (ENSCLAG00000007177)	NFIC (ENSCLAG00000007526)	CELF5 (ENSCLAG00000009940)	NCLN (ENSCLAG00000008645)	S1PR4 (ENSCLAG00000017878)	GNA15 (ENSCLAG00000009774) #19	GNA11 (ENSCLAG00000010957) #20	TLE5 (ENSCLAG00000015307) #21	TLE2 (ENSCLAG00000007966) #22	ENSCLAG00000014106	FZR1 (ENSCLAG00000014081) #23	TEKTIP1 (ENSCLAG00000009360) #24	MFSD12 (ENSCLAG00000008160) #25	HMG20B (ENSCLAG00000012030) #26	GIPC3 (ENSCLAG00000009638) #27	TBXA2R (ENSCLAG00000010610) #28	CACTIN (ENSCLAG00000010714) #29	PIP5K1C (ENSCLAG00000011318) #30	TJP3 (ENSCLAG00000008035)	APBA3 (ENSCLAG00000010718)	MRPL54 (ENSCLAG00000007908)	MATK (ENSCLAG00000008473)	ZFR2 (ENSCLAG00000010137)	ATCAY (ENSCLAG00000013570)
Degu	MODERN SPECIES	91	DIRAS1 (ENSODEG00000020412)	SLC39A3 (ENSODEG00000014274)	SGTA (ENSODEG00000014332)	THOP1 (ENSODEG00000013736)	ENSODEG00000013996	DOHH (ENSODEG00000014181)	ENSODEG00000015846	NFIC (ENSODEG00000015267)	CELF5 (ENSODEG00000014460)	NCLN (ENSODEG00000013853)	S1PR4 (ENSODEG00000020319)	GNA15 (ENSODEG00000014085) #19	GNA11 (ENSODEG00000015009) #20	ENSODEG00000020164	ENSODEG00000014482 #21	TLE2 (ENSODEG00000014073) #22	ENSODEG00000013786	FZR1 (ENSODEG00000014514) #23	TEKTIP1 (ENSODEG00000013282) #24	MFSD12 (ENSODEG00000014260) #25	HMG20B (ENSODEG00000014653) #26	GIPC3 (ENSODEG00000013296) #27	TBXA2R (ENSODEG00000013384) #28	ENSODEG00000014734 #29	PIP5K1C (ENSODEG00000013830) #30	TJP3 (ENSODEG00000013512)	APBA3 (ENSODEG00000013581)	MRPL54 (ENSODEG00000013969)	MATK (ENSODEG00000014649)	ATCAY (ENSODEG00000013730)	NMRK2 (ENSODEG00000013977)
Naked mole-rat female	MODERN SPECIES	21	ENSHGLG00000046308	ENSHGLG00000044420	ENSHGLG00000049463	ENSHGLG00000035026	ENSHGLG00000044227	ENSHGLG00000032960	ENSHGLG00000032173	ENSHGLG00000034587	ENSHGLG00000002680	ENSHGLG00000040658	ENSHGLG00000010518	S1PR4 (ENSHGLG00000042045)	GNA15 (ENSHGLG00000033945) #19	GNA11 (ENSHGLG00000035049) #20	AES (ENSHGLG00000036417) #21	TLE2 (ENSHGLG00000013600) #22	ENSHGLG00000037855 ##22	ENSHGLG00000049208	ENSHGLG00000016167	FZR1 (ENSHGLG00000019224) #23	ENSHGLG00000014588 #25	ENSHGLG00000033274 #24	HMG20B (ENSHGLG00000015242) #26	GIPC3 (ENSHGLG00000016188) #27	TBXA2R (ENSHGLG00000012829) #28	CACTIN (ENSHGLG00000016228) #29	ENSHGLG00000016360 #30	TJP3 (ENSHGLG00000014455)	APBA3 (ENSHGLG00000014560)	MRPL54 (ENSHGLG00000006157)	MATK (ENSHGLG00000006614)
Sciuridae	ANCESTRAL SPECIES	23	ENSGT00390000003420.b #27	ENSGT00940000161213 #26	ENSGT00390000005318.a #25	ENSGT00390000004282 #24	ENSGT00950000183104.B.a.a #23	ENSGT00500000044957	ENSGT00390000003403	ENSGT00940000154660.a	ENSGT00950000182916.a.a	ENSGT00940000154201.a.a.b.d	ENSGT00500000044945.a	ENSGT01050000244887.B	ENSGT00940000161736 #19	ENSGT00940000161033 #20	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #21	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #22	ENSGT01030000234519.e.a.a.b.a.a.a ##22	ENSGT00940000162830	ENSGT00940000164313	ENSGT00950000183171.A.b.a.b	ENSGT00940000159037	ENSGT00940000160231	ENSGT00940000159915	ENSGT01100000263497.E.a.b	ENSGT00950000182964.a.b.b	ENSGT00940000160274	ENSGT00390000014000	ENSGT00940000159993	ENSGT00940000158753	ENSGT00510000047872	ENSGT00940000162661
Marmotini	ANCESTRAL SPECIES	24	ENSGT00390000003420.b #27	ENSGT00940000161213 #26	ENSGT00390000005318.a #25	ENSGT00390000004282 #24	ENSGT00950000183104.B.a.a #23	ENSGT00500000044957	ENSGT00390000003403	ENSGT00940000154660.a	ENSGT00950000182916.a.a	ENSGT00940000154201.a.a.b.d	ENSGT00500000044945.a	ENSGT01050000244887.B	ENSGT00940000161736 #19	ENSGT00940000161033 #20	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #21	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #22	ENSGT01030000234519.e.a.a.b.a.a.a ##22	ENSGT00940000162830	ENSGT00940000164313	ENSGT00950000183171.A.b.a.b	ENSGT00940000159037	ENSGT00940000160231	ENSGT00940000159915	ENSGT01100000263497.E.a.b	ENSGT00950000182964.a.b.b	ENSGT00940000160274	ENSGT00390000014000	ENSGT00940000159993	ENSGT00940000158753	ENSGT00510000047872	ENSGT00940000162661
Alpin marmot	DUPLICATION
Alpin marmot	MODERN SPECIES	88	APBA3 (ENSMMMG00000016885)	TJP3 (ENSMMMG00000016855)	CACTIN (ENSMMMG00000016832) #29	ENSMMMG00000016827	GIPC3 (ENSMMMG00000016813) #27	HMG20B (ENSMMMG00000016794) #26	ENSMMMG00000016792 #25	ENSMMMG00000016780 #23	DOHH (ENSMMMG00000016778)	ENSMMMG00000016774 #24	ENSMMMG00000016765	ENSMMMG00000016760	ENSMMMG00000016752 #19	GNA11 (ENSMMMG00000016538) #20	ENSMMMG00000016526 #22	ENSMMMG00000016524 #22	ZNF77 (ENSMMMG00000016522)	ENSMMMG00000016520	THOP1 (ENSMMMG00000016515)	SGTA (ENSMMMG00000016510)	SLC39A3 (ENSMMMG00000016507)	DIRAS1 (ENSMMMG00000016506)	GNG7 (ENSMMMG00000016505)	GADD45B (ENSMMMG00000016502)	ENSMMMG00000016497	ENSMMMG00000016490	ENSMMMG00000016486	OAZ1 (ENSMMMG00000016480)	ENSMMMG00000016473	PLEKHJ1 (ENSMMMG00000016470)	DOT1L (ENSMMMG00000016365)
Alpin marmot	MODERN SPECIES	88	ZFR2 (ENSMMMG00000016959)	APBA3 (ENSMMMG00000016885)	TJP3 (ENSMMMG00000016855)	CACTIN (ENSMMMG00000016832) #29	ENSMMMG00000016827	GIPC3 (ENSMMMG00000016813) #27	HMG20B (ENSMMMG00000016794) #26	ENSMMMG00000016792 #25	ENSMMMG00000016780 #23	DOHH (ENSMMMG00000016778)	ENSMMMG00000016774 #24	ENSMMMG00000016765	ENSMMMG00000016760	ENSMMMG00000016752 #19	GNA11 (ENSMMMG00000016538) #20	ENSMMMG00000016526 #22	ENSMMMG00000016524 #22	ZNF77 (ENSMMMG00000016522)	ENSMMMG00000016520	THOP1 (ENSMMMG00000016515)	SGTA (ENSMMMG00000016510)	SLC39A3 (ENSMMMG00000016507)	DIRAS1 (ENSMMMG00000016506)	GNG7 (ENSMMMG00000016505)	GADD45B (ENSMMMG00000016502)	ENSMMMG00000016497	ENSMMMG00000016490	ENSMMMG00000016486	OAZ1 (ENSMMMG00000016480)	ENSMMMG00000016473	PLEKHJ1 (ENSMMMG00000016470)
Marmotini_b	ANCESTRAL SPECIES	9	ENSGT00390000003420.b #27	ENSGT00940000161213 #26	ENSGT00390000005318.a #25	ENSGT00390000004282 #24	ENSGT00950000183104.B.a.a #23	ENSGT00500000044957	ENSGT00390000003403	ENSGT00940000154660.a	ENSGT00950000182916.a.a	ENSGT00940000154201.a.a.b.d	ENSGT00500000044945.a	ENSGT01050000244887.B	ENSGT00940000161736 #19	ENSGT00940000161033 #20	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #21	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #22	ENSGT01030000234519.e.a.a.b.a.a.a ##22	ENSGT00940000162830	ENSGT00950000183171.A.b.a.b	ENSGT00940000159037	ENSGT00940000160231	ENSGT00940000159915	ENSGT01100000263497.E.a.b	ENSGT00950000182964.a.b.b	ENSGT00940000160274	ENSGT00390000014000	ENSGT00940000159993	ENSGT00940000158753	ENSGT00510000047872	ENSGT00940000162661	ENSGT00940000159808
Squirrel	MODERN SPECIES	188	TBXA2R (ENSSTOG00000028290) #28	GIPC3 (ENSSTOG00000007215) #27	HMG20B (ENSSTOG00000022314) #26	MFSD12 (ENSSTOG00000002823) #25	TEKTIP1 (ENSSTOG00000026760) #24	FZR1 (ENSSTOG00000002807) #23	DOHH (ENSSTOG00000023074)	SMIM24 (ENSSTOG00000030174)	NFIC (ENSSTOG00000024218)	CELF5 (ENSSTOG00000002384)	NCLN (ENSSTOG00000022427)	S1PR4 (ENSSTOG00000024766)	GNA15 (ENSSTOG00000021930) #19	GNA11 (ENSSTOG00000019951) #20	TLE5 (ENSSTOG00000028243) #21	TLE2 (ENSSTOG00000011134) #22	ZNF77 (ENSSTOG00000034105)	THOP1 (ENSSTOG00000006054)	SGTA (ENSSTOG00000013262)	SLC39A3 (ENSSTOG00000008404)	DIRAS1 (ENSSTOG00000032129)	GNG7 (ENSSTOG00000029016)	GADD45B (ENSSTOG00000027321)	LMNB2 (ENSSTOG00000027596)	TIMM13 (ENSSTOG00000019582)	TMPRSS9 (ENSSTOG00000023252)	SPPL2B (ENSSTOG00000022987)	LSM7 (ENSSTOG00000028372)	LINGO3 (ENSSTOG00000029056)	Oaz1 (ENSSTOG00000026489)	JSRP1 (ENSSTOG00000002885)
Arctic ground squirrel	MODERN SPECIES	301	GIPC3 (ENSUPAG00010008525) #27	HMG20B (ENSUPAG00010008513) #26	MFSD12 (ENSUPAG00010008498) #25	TEKTIP1 (ENSUPAG00010008492) #24	FZR1 (ENSUPAG00010008472) #23	DOHH (ENSUPAG00010008461)	SMIM44 (ENSUPAG00010008452)	ENSUPAG00010008444	NFIC (ENSUPAG00010008410)	ENSUPAG00010008374	NCLN (ENSUPAG00010008331)	S1PR4 (ENSUPAG00010008324)	GNA15 (ENSUPAG00010008318) #19	GNA11 (ENSUPAG00010008291) #20	TLE5 (ENSUPAG00010008263) #21	TLE2 (ENSUPAG00010008216) #22	ENSUPAG00010008199 ##22	ZNF77 (ENSUPAG00010008190)
Eurasian red squirrel	MODERN SPECIES	7	TBXA2R (ENSSVLG00005023817) #28	GIPC3 (ENSSVLG00005023804) #27	HMG20B (ENSSVLG00005023762) #26	MFSD12 (ENSSVLG00005023702) #25	TEKTIP1 (ENSSVLG00005023668) #24	FZR1 (ENSSVLG00005023633) #23	DOHH (ENSSVLG00005023586)	ENSSVLG00005023514	NFIC (ENSSVLG00005023336)	CELF5 (ENSSVLG00005023165)	NCLN (ENSSVLG00005023124)	S1PR4 (ENSSVLG00005023097)	GNA15 (ENSSVLG00005023052) #19	GNA11 (ENSSVLG00005023021) #20	TLE5 (ENSSVLG00005022954) #21	TLE2 (ENSSVLG00005022632) #22	ENSSVLG00005022518 ##22	ZNF77 (ENSSVLG00005022489)	ZNF556 (ENSSVLG00005022445)	THOP1 (ENSSVLG00005022285)	SGTA (ENSSVLG00005022255)	SLC39A3 (ENSSVLG00005022209)	GNG7 (ENSSVLG00005022168)	ENSSVLG00005022148	ENSSVLG00005022082	LMNB2 (ENSSVLG00005021950)	TIMM13 (ENSSVLG00005021893)	TMPRSS9 (ENSSVLG00005021697)	SPPL2B (ENSSVLG00005021399)	LSM7 (ENSSVLG00005021294)	LINGO3 (ENSSVLG00005021278)