Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000154830	ENSGT00390000009760 #7	ENSGT00940000160720 #8	ENSGT00940000153510.a #9	ENSGT00940000156686 #10	ENSGT00390000007786.a #11	ENSGT01050000244893.c.b.b #12	ENSGT01050000244961.a.b #13	ENSGT00940000156104.B #14	ENSGT00940000157228 #15	ENSGT00390000006544 #16	ENSGT00940000157338 #17	ENSGT00860000135633 #18	ENSGT00940000156505 #19	ENSGT00940000157054 #20	ENSGT00530000063996.a #22	ENSGT00940000155575 #24	ENSGT00940000159093 #25	ENSGT00940000156833 #26	ENSGT00940000155148.b #27	ENSGT00950000182951.A.b #28	ENSGT00390000014141 #29	ENSGT00940000162012 #31	ENSGT00940000162444 #32	ENSGT00940000162244 #33	ENSGT00940000158172 #34	ENSGT00940000157836 #35	ENSGT01080000257365.a #36	ENSGT01030000234586.B.a.a #37	ENSGT00940000158269	ENSGT00390000006167
Mus_B	ANCESTRAL SPECIES	2	ENSGT00390000009760 #7	ENSGT00940000160720 #8	ENSGT00940000153510.a #9	ENSGT00940000156686 #10	ENSGT00390000007786.a #11	ENSGT01050000244893.c.b.b #12	ENSGT01050000244961.a.b #13	ENSGT00940000156104.B #14	ENSGT00940000157228 #15	ENSGT00390000006544 #16	ENSGT00940000157338 #17	ENSGT00860000135633 #18	ENSGT00940000156505 #19	ENSGT00940000157054 #20	ENSGT00860000136230 #21	ENSGT00530000063996.a #22	ENSGT00940000155575 #24	ENSGT00940000159093 #25	ENSGT00940000156833 #26	ENSGT00940000155148.b #27	ENSGT00950000182951.A.b #28	ENSGT00390000014141 #29	ENSGT00940000162012 #31	ENSGT00940000162444 #32	ENSGT00940000162244 #33	ENSGT00940000158172 #34	ENSGT00940000157836 #35	ENSGT01080000257365.a #36	ENSGT01030000234586.B.a.a #37	ENSGT00940000158269	ENSGT00390000006167
Mus_C	DUPLICATION
Mus_C	ANCESTRAL SPECIES	21	ENSGT00390000009760 #7	ENSGT00940000160720 #8	ENSGT00940000153510.a #9	ENSGT00940000156686 #10	ENSGT00390000007786.a #11	ENSGT01050000244893.c.b.b #12	ENSGT01050000244961.a.b #13	ENSGT00940000156104.B #14	ENSGT00940000157228 #15	ENSGT00390000006544 #16	ENSGT00940000157338 #17	ENSGT00860000135633 #18	ENSGT00940000156505 #19	ENSGT00940000157054 #20	ENSGT00860000136230 #21	ENSGT00530000063996.a.i #22	ENSGT00940000155575 #24	ENSGT00940000159093 #25	ENSGT00940000156833 #26	ENSGT00940000155148.b #27	ENSGT00950000182951.A.b #28	ENSGT00390000014141 #29	ENSGT00940000162012 #31	ENSGT00940000162444 #32	ENSGT00940000162244 #33	ENSGT00940000158172 #34	ENSGT00940000157836 #35	ENSGT01080000257365.a #36	ENSGT01030000234586.B.a.a #37	ENSGT00940000158269	ENSGT00390000006167
spretus	MODERN SPECIES	2	Nol11 (MGP_SPRETEiJ_G0018178) #7	Pitpnc1 (MGP_SPRETEiJ_G0018179) #8	Psmd12 (MGP_SPRETEiJ_G0018180) #9	Helz (MGP_SPRETEiJ_G0018181) #10	Cacng1 (MGP_SPRETEiJ_G0018182) #11	Cacng4 (MGP_SPRETEiJ_G0018183) #12	Cacng5 (MGP_SPRETEiJ_G0018184) #13	Prkca (MGP_SPRETEiJ_G0018185) #14	Apoh (MGP_SPRETEiJ_G0018186) #15	Cep112 (MGP_SPRETEiJ_G0018187) #16	Axin2 (MGP_SPRETEiJ_G0018188) #17	MGP_SPRETEiJ_G0018189 #18	Rgs9 (MGP_SPRETEiJ_G0018190) #19	Gna13 (MGP_SPRETEiJ_G0018191) #20	9930022D16Rik (MGP_SPRETEiJ_G0018192) #21	Amz2 (MGP_SPRETEiJ_G0018193) #22	Or10x4 (MGP_SPRETEiJ_G0018194) #23	Slc16a6 (MGP_SPRETEiJ_G0018195) #24	Arsg (MGP_SPRETEiJ_G0018196) #25	Wipi1 (MGP_SPRETEiJ_G0018197) #26	Prkar1a (MGP_SPRETEiJ_G0018198) #27	Fam20a (MGP_SPRETEiJ_G0018199) #28	1700012B07Rik (MGP_SPRETEiJ_G0018200) #29	Abca8b (MGP_SPRETEiJ_G0018201) #30	Abca8a (MGP_SPRETEiJ_G0018202) #31	Abca9 (MGP_SPRETEiJ_G0018203) #32	Abca6 (MGP_SPRETEiJ_G0018204) #33	Abca5 (MGP_SPRETEiJ_G0018205) #34	Map2k6 (MGP_SPRETEiJ_G0018206) #35	Kcnj16 (MGP_SPRETEiJ_G0018207) #36	Kcnj2 (MGP_SPRETEiJ_G0018208) #37
Steppe mouse	MODERN SPECIES	2985										Axin2 (ENSMSIG00000018768) #17	E030025P04Rik (ENSMSIG00000018732) #18	Rgs9 (ENSMSIG00000018660) #19	Gna13 (ENSMSIG00000018639) #20	ENSMSIG00000018622	9930022D16Rik (ENSMSIG00000018607) #21	ENSMSIG00000018552 #22	Slc16a6 (ENSMSIG00000018535) #24	Arsg (ENSMSIG00000018468) #25	Wipi1 (ENSMSIG00000018411) #26	Prkar1a (ENSMSIG00000018398) #27	Fam20a (ENSMSIG00000018364) #28	1700012B07Rik (ENSMSIG00000018338) #29	Abca8b (ENSMSIG00000018030) #31	Abca9 (ENSMSIG00000017967) #32	Abca6 (ENSMSIG00000017723) #33
Mus_C	ANCESTRAL SPECIES																	ENSGT00530000063996.a.j ##22
Steppe mouse	MODERN SPECIES	3244	Olfml3 (ENSMSIG00000011637)	ENSMSIG00000011650	Syt6 (ENSMSIG00000011663)	Trim33 (ENSMSIG00000011742)	ENSMSIG00000011886	Dennd2c (ENSMSIG00000011890)	Ampd1 (ENSMSIG00000011920)	ENSMSIG00000011973	Csde1 (ENSMSIG00000011996)	Sike1 (ENSMSIG00000012694)	Nr1h5 (ENSMSIG00000012716)	Sycp1 (ENSMSIG00000012782)	Tshb (ENSMSIG00000012914)	Tspan2 (ENSMSIG00000012946)	ENSMSIG00000013003	ENSMSIG00000013032 ##22
Mouse	MODERN SPECIES	2	Nol11 (ENSMUSG00000018433) #7	Pitpnc1 (ENSMUSG00000040430) #8	Psmd12 (ENSMUSG00000020720) #9	Helz (ENSMUSG00000020721) #10	Cacng1 (ENSMUSG00000020722) #11	Cacng4 (ENSMUSG00000020723) #12	Cacng5 (ENSMUSG00000040373) #13	Prkca (ENSMUSG00000050965) #14	Apoh (ENSMUSG00000000049) #15	Cep112 (ENSMUSG00000020728) #16	Axin2 (ENSMUSG00000000142) #17	E030025P04Rik (ENSMUSG00000078605) #18	Rgs9 (ENSMUSG00000020599) #19	Gna13 (ENSMUSG00000020611) #20	9930022D16Rik (ENSMUSG00000045065) #21	Amz2 (ENSMUSG00000020610) #22	Slc16a6 (ENSMUSG00000041920) #24	Arsg (ENSMUSG00000020604) #25	Wipi1 (ENSMUSG00000041895) #26	Prkar1a (ENSMUSG00000020612) #27	Fam20a (ENSMUSG00000020614) #28	1700012B07Rik (ENSMUSG00000020617) #29	Abca8b (ENSMUSG00000020620) #31	Abca8a (ENSMUSG00000041828) #31	Abca9 (ENSMUSG00000041797) #32	Abca6 (ENSMUSG00000044749) #33	Abca5 (ENSMUSG00000018800) #34	Map2k6 (ENSMUSG00000020623) #35	Kcnj16 (ENSMUSG00000051497) #36	Kcnj2 (ENSMUSG00000041695) #37	Sox9 (ENSMUSG00000000567)
Ryukyu mouse	MODERN SPECIES	2	Bptf (MGP_CAROLIEiJ_G0017333)	Nol11 (MGP_CAROLIEiJ_G0017334) #7	Pitpnc1 (MGP_CAROLIEiJ_G0017335) #8	Psmd12 (MGP_CAROLIEiJ_G0017336) #9	Helz (MGP_CAROLIEiJ_G0017337) #10	Cacng1 (MGP_CAROLIEiJ_G0017338) #11	Cacng4 (MGP_CAROLIEiJ_G0017339) #12	Cacng5 (MGP_CAROLIEiJ_G0017340) #13	Prkca (MGP_CAROLIEiJ_G0017341) #14	Apoh (MGP_CAROLIEiJ_G0017342) #15	Cep112 (MGP_CAROLIEiJ_G0017343) #16	Axin2 (MGP_CAROLIEiJ_G0017344) #17	E030025P04Rik (MGP_CAROLIEiJ_G0017345) #18	Rgs9 (MGP_CAROLIEiJ_G0017346) #19	Gna13 (MGP_CAROLIEiJ_G0017347) #20	Amz2 (MGP_CAROLIEiJ_G0017348) #22	Slc16a6 (MGP_CAROLIEiJ_G0017349) #24	Arsg (MGP_CAROLIEiJ_G0017350) #25	Wipi1 (MGP_CAROLIEiJ_G0017351) #26	Prkar1a (MGP_CAROLIEiJ_G0017352) #27	Fam20a (MGP_CAROLIEiJ_G0017353) #28	1700012B07Rik (MGP_CAROLIEiJ_G0017354) #29	Abca8b (MGP_CAROLIEiJ_G0017355) #31	Abca8a (MGP_CAROLIEiJ_G0017356) #31	Abca9 (MGP_CAROLIEiJ_G0017357) #32	Abca6 (MGP_CAROLIEiJ_G0017358) #33	Abca5 (MGP_CAROLIEiJ_G0017359) #34	Map2k6 (MGP_CAROLIEiJ_G0017360) #35	Kcnj16 (MGP_CAROLIEiJ_G0017361) #36	Kcnj2 (MGP_CAROLIEiJ_G0017362) #37	Sox9 (MGP_CAROLIEiJ_G0017363)