Mus_B	ANCESTRAL SPECIES	1	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a	ENSGT00950000182919.C	ENSGT00940000161892 #7	ENSGT00940000160027 #8	ENSGT00940000157270 #9	ENSGT00940000161653 #10	ENSGT00940000161503 #11	ENSGT00940000158266 #12	ENSGT00940000161308 #13	ENSGT00940000159938 #14	ENSGT00940000161457 #15	ENSGT00940000161025 #16	ENSGT00390000001859 #17	ENSGT00940000154298.a.a #19	ENSGT00940000156582 #20	ENSGT01030000234635.a.b.a.b.b.a.a #22	ENSGT00940000156851 #23	ENSGT00910000144296 #24	ENSGT00390000004153 #25	ENSGT00390000013474.a #26	ENSGT00730000111135 #27	ENSGT00940000162304 #28	ENSGT00390000000673.b #29	ENSGT00940000155099 #32	ENSGT00940000155436.k #34	ENSGT00940000161352 #35	ENSGT00940000156075.a.a #36	ENSGT01030000234646.B.a.a.b #37	ENSGT00940000155353	ENSGT00940000160127	ENSGT00960000192081
Mus_C	ANCESTRAL SPECIES		ENSGT00940000153147.m.b	ENSGT00950000182919.C	ENSGT00940000161892 #7	ENSGT00940000160027 #8	ENSGT00940000157270 #9	ENSGT00940000161653 #10	ENSGT00940000161503 #11	ENSGT00940000158266 #12	ENSGT00940000161308 #13	ENSGT00940000159938 #14	ENSGT00940000161457 #15	ENSGT00940000161025 #16	ENSGT00390000001859 #17	ENSGT00940000154298.a.a #19	ENSGT00940000156582 #20	ENSGT01030000234635.a.b.a.b.b.a.a #22	ENSGT00940000156851 #23	ENSGT00910000144296 #24	ENSGT00390000004153 #25	ENSGT00390000013474.a #26	ENSGT00730000111135 #27	ENSGT00940000162304 #28	ENSGT00390000000673.b #29	ENSGT00940000155099 #32	ENSGT00940000155436.k #34	ENSGT00940000161352 #35	ENSGT00940000156075.a.a #36	ENSGT01030000234646.B.a.a.b #37	ENSGT00940000155353	ENSGT00940000160127	ENSGT00960000192081
Steppe mouse	MODERN SPECIES	3326	Hoxd1 (ENSMSIG00000006137) #7	Hoxd3 (ENSMSIG00000006158) #8	ENSMSIG00000006186 #9	Hoxd8 (ENSMSIG00000006283) #10	Hoxd9 (ENSMSIG00000006304) #11	Hoxd10 (ENSMSIG00000006313) #12	Hoxd11 (ENSMSIG00000006326) #13	Hoxd12 (ENSMSIG00000006333) #14	Hoxd13 (ENSMSIG00000006348) #15	Evx2 (ENSMSIG00000006361) #16	Lnpk (ENSMSIG00000006386) #17	ENSMSIG00000006495 #18	Atp5g3 (ENSMSIG00000006512) #19	Atf2 (ENSMSIG00000006546) #20	ENSMSIG00000006659 #21	Chn1 (ENSMSIG00000006692) #22	Chrna1 (ENSMSIG00000006852) #23	Wipf1 (ENSMSIG00000006899) #24	Gpr155 (ENSMSIG00000006975) #25	Scrn3 (ENSMSIG00000007111) #26	Cir1 (ENSMSIG00000007130) #27	Sp9 (ENSMSIG00000007182) #28	Ola1 (ENSMSIG00000007200) #29	ENSMSIG00000007302 #30	ENSMSIG00000007310 #31	Sp3 (ENSMSIG00000007322) #32	ENSMSIG00000007399 #33	Cdca7 (ENSMSIG00000007687) #34	Map3k20 (ENSMSIG00000007713) #35	Rapgef4 (ENSMSIG00000007773) #36	Pdk1 (ENSMSIG00000008171) #37
spretus	MODERN SPECIES	11	Mtx2 (MGP_SPRETEiJ_G0024600)	Hoxd1 (MGP_SPRETEiJ_G0024599) #7	MGP_SPRETEiJ_G0024598 #9	Hoxd4 (MGP_SPRETEiJ_G0024597) #9	Hoxd3 (MGP_SPRETEiJ_G0024596) #8	Hoxd8 (MGP_SPRETEiJ_G0024595) #10	Hoxd9 (MGP_SPRETEiJ_G0024594) #11	Hoxd10 (MGP_SPRETEiJ_G0024593) #12	Hoxd11 (MGP_SPRETEiJ_G0024592) #13	Hoxd12 (MGP_SPRETEiJ_G0024591) #14	Hoxd13 (MGP_SPRETEiJ_G0024590) #15	Evx2 (MGP_SPRETEiJ_G0024589) #16	Lnpk (MGP_SPRETEiJ_G0024588) #17	Atp5g3 (MGP_SPRETEiJ_G0024587) #19	Atf2 (MGP_SPRETEiJ_G0024586) #20	Chn1 (MGP_SPRETEiJ_G0024585) #22	Chrna1 (MGP_SPRETEiJ_G0024584) #23	Wipf1 (MGP_SPRETEiJ_G0024583) #24	Gpr155 (MGP_SPRETEiJ_G0024582) #25	Scrn3 (MGP_SPRETEiJ_G0024581) #26	Cir1 (MGP_SPRETEiJ_G0024580) #27	Sp9 (MGP_SPRETEiJ_G0024579) #28	Ola1 (MGP_SPRETEiJ_G0024578) #29	MGP_SPRETEiJ_G0024577	Sp3 (MGP_SPRETEiJ_G0024576) #32	Cdca7 (MGP_SPRETEiJ_G0024575) #34	Map3k20 (MGP_SPRETEiJ_G0024574) #35	Rapgef4 (MGP_SPRETEiJ_G0024573) #36	Pdk1 (MGP_SPRETEiJ_G0024572) #37	Itga6 (MGP_SPRETEiJ_G0024571)	Dlx2 (MGP_SPRETEiJ_G0024570)
Mouse	MODERN SPECIES	11	Hnrnpa3 (ENSMUSG00000059005)	Mtx2 (ENSMUSG00000027099)	Hoxd1 (ENSMUSG00000042448) #7	Hoxd4 (ENSMUSG00000101174) #9	Hoxd3 (ENSMUSG00000079277) #8	Hoxd8 (ENSMUSG00000027102) #10	Hoxd9 (ENSMUSG00000043342) #11	Hoxd10 (ENSMUSG00000050368) #12	Hoxd11 (ENSMUSG00000042499) #13	Hoxd12 (ENSMUSG00000001823) #14	Hoxd13 (ENSMUSG00000001819) #15	Evx2 (ENSMUSG00000001815) #16	Lnpk (ENSMUSG00000009207) #17	Atp5g3 (ENSMUSG00000018770) #19	Atf2 (ENSMUSG00000027104) #20	Chn1 (ENSMUSG00000056486) #22	Chrna1 (ENSMUSG00000027107) #23	Wipf1 (ENSMUSG00000075284) #24	Gpr155 (ENSMUSG00000041762) #25	Scrn3 (ENSMUSG00000008226) #26	Cir1 (ENSMUSG00000041777) #27	Sp9 (ENSMUSG00000068859) #28	Ola1 (ENSMUSG00000027108) #29	Sp3 (ENSMUSG00000027109) #32	Cdca7 (ENSMUSG00000055612) #34	Map3k20 (ENSMUSG00000004085) #35	Rapgef4 (ENSMUSG00000049044) #36	Pdk1 (ENSMUSG00000006494) #37	Itga6 (ENSMUSG00000027111)	Dlx2 (ENSMUSG00000023391)	Dlx1 (ENSMUSG00000041911)