Chordata DUPLICATION Chordata DUPLICATION Chordata ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.a #22 Vertebrata ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.a #22 Gnathostomata ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.a #22 Euteleostomi ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.a #22 Sarcopterygii ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.a #22 Tetrapoda ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.a #22 Amniota ANCESTRAL SPECIES 6 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00940000173501 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000154076.B.b ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000175090 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00940000164127 Mammalia ANCESTRAL SPECIES 6 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00940000173501 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000175090 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b #34 Theria ANCESTRAL SPECIES 5 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00940000173501 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00570000080031 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000175090 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 Eutheria ANCESTRAL SPECIES 10 ENSGT00940000153147.m.a.a #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00570000080031 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000175090 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 Boreoeutheria ANCESTRAL SPECIES 14 ENSGT00940000153147.m.a.a.a.b.a.b #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00570000080031 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000175090 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 Euarchontoglires ANCESTRAL SPECIES 14 ENSGT00940000153147.m.a.a.a.b.a.b #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00960000192081 Euarchontoglires_A ANCESTRAL SPECIES 13 ENSGT00940000153147.m.a.a.a.b.a.b #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00960000192081 Glires ANCESTRAL SPECIES 14 ENSGT00940000153147.m.a.a.a.b.a.b #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00960000192081 Rodentia ANCESTRAL SPECIES 14 ENSGT00940000153147.m.a.a.a.b.a.b #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00960000192081 Rodentia_B ANCESTRAL SPECIES 12 ENSGT00940000153147.m.a.a.a.b.a.b #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00960000192081 Kangaroo rat MODERN SPECIES 324 Agps (ENSDORG00000006480) #7 Nfe2l2 (ENSDORG00000030173) #8 Hnrnpa3 (ENSDORG00000011155) #9 Mtx2 (ENSDORG00000003848) #10 Hoxd1 (ENSDORG00000009445) #11 Hoxd3 (ENSDORG00000029389) #12 Hoxd4 (ENSDORG00000028681) #13 ENSDORG00000027655 #14 Hoxd10 (ENSDORG00000009436) #15 ENSDORG00000029219 #16 Hoxd12 (ENSDORG00000009434) #17 Evx2 (ENSDORG00000009432) #18 Lnpk (ENSDORG00000015736) #19 Atp5g3 (ENSDORG00000012973) #20 Atf2 (ENSDORG00000024409) #21 Chn1 (ENSDORG00000002182) #22 Chrna1 (ENSDORG00000001136) #23 ENSDORG00000027952 #24 Gpr155 (ENSDORG00000013683) #25 ENSDORG00000013682 #26 Cir1 (ENSDORG00000013676) #27 Sp9 (ENSDORG00000025534) #28 ENSDORG00000008681 #29 Sp3 (ENSDORG00000009045) #30 Cdca7 (ENSDORG00000001759) #31 ENSDORG00000005439 #32 Rapgef4 (ENSDORG00000005529) #33 Pdk1 (ENSDORG00000000069) #34 Itga6 (ENSDORG00000005156) #35 Dlx2 (ENSDORG00000030062) #36 Dlx1 (ENSDORG00000030117) #37 Myomorpha ANCESTRAL SPECIES 10 ENSGT00940000153147.m.a.a.a.b.a.b.p #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00960000192081 Lesser Egyptian jerboa MODERN SPECIES 75 Agps (ENSJJAG00000016720) #7 Nfe2l2 (ENSJJAG00000019899) #8 ENSJJAG00000000149 #9 ENSJJAG00000013228 #10 ENSJJAG00000019952 Hoxd1 (ENSJJAG00000019059) #11 Hoxd10 (ENSJJAG00000011932) #15 Hoxd11 (ENSJJAG00000012344) #16 Hoxd12 (ENSJJAG00000016261) #17 Hoxd13 (ENSJJAG00000016388) Evx2 (ENSJJAG00000017484) #18 Lnpk (ENSJJAG00000011710) #19 ENSJJAG00000013766 Atp5g3 (ENSJJAG00000022403) #20 Atf2 (ENSJJAG00000015836) #21 Chn1 (ENSJJAG00000015001) #22 ENSJJAG00000014124 Chrna1 (ENSJJAG00000018710) #23 Scrn3 (ENSJJAG00000021027) #26 Cir1 (ENSJJAG00000010849) #27 Sp9 (ENSJJAG00000020056) #28 ENSJJAG00000022958 #29 Sp3 (ENSJJAG00000011138) #30 Cdca7 (ENSJJAG00000014387) #31 ENSJJAG00000016192 #32 Rapgef4 (ENSJJAG00000009830) #33 ENSJJAG00000015889 Pdk1 (ENSJJAG00000020102) #34 Itga6 (ENSJJAG00000012292) #35 Dlx2 (ENSJJAG00000019163) #36 Dlx1 (ENSJJAG00000008558) #37 Muroidea ANCESTRAL SPECIES 34 ENSGT00940000153147.m.a.a.a.b.a.b.p #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00960000192081 Upper Galilee mountains blind mole rat MODERN SPECIES 1735 ENSNGAG00000021745 ##9 Mtx2 (ENSNGAG00000020555) #10 Hoxd1 (ENSNGAG00000021714) #11 Hoxd3 (ENSNGAG00000021055) #12 Hoxd4 (ENSNGAG00000020270) #13 Hoxd8 (ENSNGAG00000011799) #14 Hoxd9 (ENSNGAG00000011105) Hoxd10 (ENSNGAG00000023868) #15 Hoxd11 (ENSNGAG00000023438) #16 Hoxd12 (ENSNGAG00000023455) #17 Hoxd13 (ENSNGAG00000023727) Evx2 (ENSNGAG00000023877) #18 Lnpk (ENSNGAG00000023466) #19 Atp5g3 (ENSNGAG00000004748) #20 Atf2 (ENSNGAG00000003870) #21 Chn1 (ENSNGAG00000021893) #22 Chrna1 (ENSNGAG00000023534) #23 ENSNGAG00000022478 #24 Gpr155 (ENSNGAG00000019246) #25 Scrn3 (ENSNGAG00000008783) #26 Cir1 (ENSNGAG00000023091) #27 Sp9 (ENSNGAG00000002858) #28 Ola1 (ENSNGAG00000017639) #29 ENSNGAG00000012551 ENSNGAG00000011265 #30 Cdca7 (ENSNGAG00000005943) #31 ENSNGAG00000023564 #32 Rapgef4 (ENSNGAG00000024160) #33 ENSNGAG00000021913 #34 Itga6 (ENSNGAG00000023769) #35 Dlx2 (ENSNGAG00000022793) #36 Muroidea_A ANCESTRAL SPECIES 2 ENSGT00940000153147.m.a.a.a.b.a.b.p #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00960000192081 Cricetidae ANCESTRAL SPECIES 12 ENSGT00940000153147.m.a.a.a.b.a.b.p #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00940000160029 #37 Cricetinae ANCESTRAL SPECIES 1 ENSGT00940000154808.a.a ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00940000171387 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00940000160029 #37 ENSGT00940000157735 Chinese hamster chok1gshd MODERN SPECIES 188 ENSCGRG00001014512 Hoxd1 (ENSCGRG00001011572) #11 Hoxd3 (ENSCGRG00001011863) #12 Hoxd4 (ENSCGRG00001012360) #13 Hoxd8 (ENSCGRG00001013130) #14 Hoxd9 (ENSCGRG00001005991) Hoxd10 (ENSCGRG00001008302) #15 Hoxd11 (ENSCGRG00001010386) #16 Hoxd12 (ENSCGRG00001000877) #17 Hoxd13 (ENSCGRG00001001661) Evx2 (ENSCGRG00001003649) #18 ENSCGRG00001006802 Lnpk (ENSCGRG00001011515) #19 Atp5g3 (ENSCGRG00001012041) #20 Atf2 (ENSCGRG00001015584) #21 Chn1 (ENSCGRG00001019152) #22 ENSCGRG00001019803 Chrna1 (ENSCGRG00001020291) #23 ENSCGRG00001021853 Gpr155 (ENSCGRG00001014219) #25 Scrn3 (ENSCGRG00001014709) #26 Cir1 (ENSCGRG00001015518) #27 Sp9 (ENSCGRG00001024896) #28 Ola1 (ENSCGRG00001001469) #29 ENSCGRG00001003688 ENSCGRG00001005867 #30 ENSCGRG00001009149 Cdca7 (ENSCGRG00001013059) #31 Map3k20 (ENSCGRG00001013908) #32 Rapgef4 (ENSCGRG00001015061) #33 ENSCGRG00001016131 #34 Golden Hamster MODERN SPECIES 618 Mtx2 (ENSMAUG00000017870) #10 Hoxd1 (ENSMAUG00000018401) #11 Hoxd3 (ENSMAUG00000018318) #12 Hoxd4 (ENSMAUG00000018545) #13 Hoxd8 (ENSMAUG00000018092) #14 Hoxd9 (ENSMAUG00000018538) Hoxd10 (ENSMAUG00000016731) #15 ENSMAUG00000020249 #16 Hoxd12 (ENSMAUG00000018416) #17 Hoxd13 (ENSMAUG00000017185) Evx2 (ENSMAUG00000020383) #18 Lnpk (ENSMAUG00000018821) #19 ENSMAUG00000020495 Atp5g3 (ENSMAUG00000017685) #20 Atf2 (ENSMAUG00000018366) #21 Chn1 (ENSMAUG00000018455) #22 Chrna1 (ENSMAUG00000017924) #23 ENSMAUG00000019796 Gpr155 (ENSMAUG00000019481) #25 Scrn3 (ENSMAUG00000020703) #26 ENSMAUG00000019383 #27 Sp9 (ENSMAUG00000020520) #28 Ola1 (ENSMAUG00000019168) #29 ENSMAUG00000001485 ENSMAUG00000020351 Cdca7 (ENSMAUG00000020932) #31 Map3k20 (ENSMAUG00000021309) #32 Rapgef4 (ENSMAUG00000021185) #33 Pdk1 (ENSMAUG00000019499) #34 Itga6 (ENSMAUG00000020187) #35 Dlx2 (ENSMAUG00000021831) #36 Cricetidae_B ANCESTRAL SPECIES 7 ENSGT00940000153147.m.a.a.a.b.a.b.p #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00940000160029 #37 Prairie vole MODERN SPECIES 12 ENSMOCG00000019409 ##9 Mtx2 (ENSMOCG00000017110) #10 Hoxd1 (ENSMOCG00000014086) #11 Hoxd4 (ENSMOCG00000013646) #13 Hoxd3 (ENSMOCG00000022552) #12 Hoxd8 (ENSMOCG00000022746) #14 Hoxd9 (ENSMOCG00000005870) Hoxd10 (ENSMOCG00000006052) #15 Hoxd11 (ENSMOCG00000019226) #16 Hoxd12 (ENSMOCG00000018953) #17 Hoxd13 (ENSMOCG00000014618) Evx2 (ENSMOCG00000010466) #18 Lnpk (ENSMOCG00000022345) #19 ENSMOCG00000012786 #20 Atf2 (ENSMOCG00000015301) #21 Chn1 (ENSMOCG00000005574) #22 Chrna1 (ENSMOCG00000020367) #23 ENSMOCG00000014660 Gpr155 (ENSMOCG00000003950) #25 Scrn3 (ENSMOCG00000018966) #26 Cir1 (ENSMOCG00000017545) #27 Sp9 (ENSMOCG00000019136) #28 ENSMOCG00000003125 #29 ENSMOCG00000003269 Sp3 (ENSMOCG00000022929) #30 Cdca7 (ENSMOCG00000015927) #31 Map3k20 (ENSMOCG00000001753) #32 Rapgef4 (ENSMOCG00000020670) #33 Pdk1 (ENSMOCG00000020171) #34 Itga6 (ENSMOCG00000013969) #35 Dlx2 (ENSMOCG00000011375) #36 Northern American deer mouse MODERN SPECIES 17 Hoxd1 (ENSPEMG00000021389) #11 Hoxd3 (ENSPEMG00000028862) #12 Hoxd4 (ENSPEMG00000024627) #13 ENSPEMG00000029322 ENSPEMG00000028623 #14 Hoxd9 (ENSPEMG00000006162) Hoxd10 (ENSPEMG00000030445) #15 ENSPEMG00000018816 #16 Hoxd12 (ENSPEMG00000019240) #17 Hoxd13 (ENSPEMG00000022412) Evx2 (ENSPEMG00000022145) #18 Lnpk (ENSPEMG00000017827) #19 ENSPEMG00000008662 Atp5g3 (ENSPEMG00000023766) #20 Atf2 (ENSPEMG00000021625) #21 Chn1 (ENSPEMG00000022535) #22 Chrna1 (ENSPEMG00000012571) #23 Wipf1 (ENSPEMG00000013848) #24 Gpr155 (ENSPEMG00000022602) #25 Scrn3 (ENSPEMG00000022424) #26 Cir1 (ENSPEMG00000022223) #27 Sp9 (ENSPEMG00000029035) #28 Ola1 (ENSPEMG00000021970) #29 Sp3 (ENSPEMG00000022766) #30 Cdca7 (ENSPEMG00000022184) #31 Map3k20 (ENSPEMG00000000421) #32 Rapgef4 (ENSPEMG00000009780) #33 Pdk1 (ENSPEMG00000002841) #34 Itga6 (ENSPEMG00000021809) #35 Dlx2 (ENSPEMG00000028459) #36 Dlx1 (ENSPEMG00000026584) #37 Murinae ANCESTRAL SPECIES 1 ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00960000192081 Rat DUPLICATION Rat MODERN SPECIES 13 Hoxd1 (ENSRNOG00000001572) #11 Hoxd3 (ENSRNOG00000001577) #12 AABR07052559.1 (ENSRNOG00000053144) Hoxd4 (ENSRNOG00000001578) #13 Hoxd8 (ENSRNOG00000071108) #14 Hoxd9 (ENSRNOG00000001580) Hoxd10 (ENSRNOG00000001581) #15 Hoxd11 (ENSRNOG00000069591) #16 Hoxd12 (ENSRNOG00000001587) #17 Hoxd13 (ENSRNOG00000001588) Evx2 (ENSRNOG00000001589) #18 Lnpk (ENSRNOG00000001593) #19 Atp5mc3 (ENSRNOG00000001596) #20 Atf2 (ENSRNOG00000001597) #21 ENSRNOG00000068403 Chn1 (ENSRNOG00000017939) #22 Chrna1 (ENSRNOG00000018286) #23 Rbx1-ps2 (ENSRNOG00000067031) Wipf1 (ENSRNOG00000018406) #24 Gpr155 (ENSRNOG00000018485) #25 Scrn3 (ENSRNOG00000018657) #26 Cir1 (ENSRNOG00000018719) #27 Sp9 (ENSRNOG00000028187) #28 ENSRNOG00000032195 Ola1 (ENSRNOG00000019047) #29 Sp3 (ENSRNOG00000060479) #30 AC120066.1 (ENSRNOG00000001510) LOC120101567 (ENSRNOG00000028492) Eno1-ps1 (ENSRNOG00000028543) AABR07052519.1 (ENSRNOG00000029423) Cdca7 (ENSRNOG00000001514) #31 Rat MODERN SPECIES 9 LOC102549410 (ENSRNOG00000068672) Tmx3 (ENSRNOG00000045740) Dok6 (ENSRNOG00000038190) Cd226 (ENSRNOG00000038197) LOC689166 (ENSRNOG00000004661) Rttn (ENSRNOG00000038200) AABR07032856.1 (ENSRNOG00000038211) #22 ENSRNOG00000067774 Socs6 (ENSRNOG00000038212) ENSRNOG00000064792 RGD1560813 (ENSRNOG00000013622) RGD1559726 (ENSRNOG00000034073) Cbln2 (ENSRNOG00000013654) Neto1 (ENSRNOG00000014006) ENSRNOG00000067088 Fbxo15 (ENSRNOG00000038225) Timm21 (ENSRNOG00000015142) Cyb5a (ENSRNOG00000070068) LOC100359752 (ENSRNOG00000038241) Dipk1c (ENSRNOG00000015448) Cndp2 (ENSRNOG00000015591) Cndp1 (ENSRNOG00000027739) Mus ANCESTRAL SPECIES 1 ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00960000192081 Mus_A ANCESTRAL SPECIES ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00960000192081 Mus_B ANCESTRAL SPECIES 1 ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436.k #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00960000192081 Mouse MODERN SPECIES 11 Hnrnpa3 (ENSMUSG00000059005) #9 Mtx2 (ENSMUSG00000027099) #10 Hoxd1 (ENSMUSG00000042448) #11 Hoxd4 (ENSMUSG00000101174) #13 Hoxd3 (ENSMUSG00000079277) #12 Hoxd8 (ENSMUSG00000027102) #14 Hoxd9 (ENSMUSG00000043342) Hoxd10 (ENSMUSG00000050368) #15 Hoxd11 (ENSMUSG00000042499) #16 Hoxd12 (ENSMUSG00000001823) #17 Hoxd13 (ENSMUSG00000001819) Evx2 (ENSMUSG00000001815) #18 Lnpk (ENSMUSG00000009207) #19 Atp5g3 (ENSMUSG00000018770) #20 Atf2 (ENSMUSG00000027104) #21 Chn1 (ENSMUSG00000056486) #22 Chrna1 (ENSMUSG00000027107) #23 Wipf1 (ENSMUSG00000075284) #24 Gpr155 (ENSMUSG00000041762) #25 Scrn3 (ENSMUSG00000008226) #26 Cir1 (ENSMUSG00000041777) #27 Sp9 (ENSMUSG00000068859) #28 Ola1 (ENSMUSG00000027108) #29 Sp3 (ENSMUSG00000027109) #30 Cdca7 (ENSMUSG00000055612) #31 Map3k20 (ENSMUSG00000004085) #32 Rapgef4 (ENSMUSG00000049044) #33 Pdk1 (ENSMUSG00000006494) #34 Itga6 (ENSMUSG00000027111) #35 Dlx2 (ENSMUSG00000023391) #36 Dlx1 (ENSMUSG00000041911) #37 Mus_C ANCESTRAL SPECIES ENSGT00940000153147.m.b ##9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436.k #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00960000192081 spretus MODERN SPECIES 11 Mtx2 (MGP_SPRETEiJ_G0024600) #10 Hoxd1 (MGP_SPRETEiJ_G0024599) #11 MGP_SPRETEiJ_G0024598 #13 Hoxd4 (MGP_SPRETEiJ_G0024597) #13 Hoxd3 (MGP_SPRETEiJ_G0024596) #12 Hoxd8 (MGP_SPRETEiJ_G0024595) #14 Hoxd9 (MGP_SPRETEiJ_G0024594) Hoxd10 (MGP_SPRETEiJ_G0024593) #15 Hoxd11 (MGP_SPRETEiJ_G0024592) #16 Hoxd12 (MGP_SPRETEiJ_G0024591) #17 Hoxd13 (MGP_SPRETEiJ_G0024590) Evx2 (MGP_SPRETEiJ_G0024589) #18 Lnpk (MGP_SPRETEiJ_G0024588) #19 Atp5g3 (MGP_SPRETEiJ_G0024587) #20 Atf2 (MGP_SPRETEiJ_G0024586) #21 Chn1 (MGP_SPRETEiJ_G0024585) #22 Chrna1 (MGP_SPRETEiJ_G0024584) #23 Wipf1 (MGP_SPRETEiJ_G0024583) #24 Gpr155 (MGP_SPRETEiJ_G0024582) #25 Scrn3 (MGP_SPRETEiJ_G0024581) #26 Cir1 (MGP_SPRETEiJ_G0024580) #27 Sp9 (MGP_SPRETEiJ_G0024579) #28 Ola1 (MGP_SPRETEiJ_G0024578) #29 MGP_SPRETEiJ_G0024577 Sp3 (MGP_SPRETEiJ_G0024576) #30 Cdca7 (MGP_SPRETEiJ_G0024575) #31 Map3k20 (MGP_SPRETEiJ_G0024574) #32 Rapgef4 (MGP_SPRETEiJ_G0024573) #33 Pdk1 (MGP_SPRETEiJ_G0024572) #34 Itga6 (MGP_SPRETEiJ_G0024571) #35 Dlx2 (MGP_SPRETEiJ_G0024570) #36 Steppe mouse MODERN SPECIES 3326 Hoxd1 (ENSMSIG00000006137) #11 Hoxd3 (ENSMSIG00000006158) #12 ENSMSIG00000006186 #13 Hoxd8 (ENSMSIG00000006283) #14 Hoxd9 (ENSMSIG00000006304) Hoxd10 (ENSMSIG00000006313) #15 Hoxd11 (ENSMSIG00000006326) #16 Hoxd12 (ENSMSIG00000006333) #17 Hoxd13 (ENSMSIG00000006348) Evx2 (ENSMSIG00000006361) #18 Lnpk (ENSMSIG00000006386) #19 ENSMSIG00000006495 Atp5g3 (ENSMSIG00000006512) #20 Atf2 (ENSMSIG00000006546) #21 ENSMSIG00000006659 Chn1 (ENSMSIG00000006692) #22 Chrna1 (ENSMSIG00000006852) #23 Wipf1 (ENSMSIG00000006899) #24 Gpr155 (ENSMSIG00000006975) #25 Scrn3 (ENSMSIG00000007111) #26 Cir1 (ENSMSIG00000007130) #27 Sp9 (ENSMSIG00000007182) #28 Ola1 (ENSMSIG00000007200) #29 ENSMSIG00000007302 ENSMSIG00000007310 Sp3 (ENSMSIG00000007322) #30 ENSMSIG00000007399 Cdca7 (ENSMSIG00000007687) #31 Map3k20 (ENSMSIG00000007713) #32 Rapgef4 (ENSMSIG00000007773) #33 Pdk1 (ENSMSIG00000008171) #34 Ryukyu mouse MODERN SPECIES 11 Mtx2 (MGP_CAROLIEiJ_G0023677) #10 Hoxd1 (MGP_CAROLIEiJ_G0023676) #11 MGP_CAROLIEiJ_G0023675 #13 Hoxd4 (MGP_CAROLIEiJ_G0023674) #13 Hoxd3 (MGP_CAROLIEiJ_G0023673) #12 Hoxd8 (MGP_CAROLIEiJ_G0023672) #14 Hoxd9 (MGP_CAROLIEiJ_G0023671) Hoxd10 (MGP_CAROLIEiJ_G0023670) #15 Hoxd11 (MGP_CAROLIEiJ_G0023669) #16 Hoxd12 (MGP_CAROLIEiJ_G0023668) #17 Hoxd13 (MGP_CAROLIEiJ_G0023667) Evx2 (MGP_CAROLIEiJ_G0023666) #18 Lnpk (MGP_CAROLIEiJ_G0023665) #19 Atp5g3 (MGP_CAROLIEiJ_G0023664) #20 Atf2 (MGP_CAROLIEiJ_G0023663) #21 Chn1 (MGP_CAROLIEiJ_G0023662) #22 Chrna1 (MGP_CAROLIEiJ_G0023661) #23 Wipf1 (MGP_CAROLIEiJ_G0023660) #24 Gpr155 (MGP_CAROLIEiJ_G0023659) #25 Scrn3 (MGP_CAROLIEiJ_G0023658) #26 Cir1 (MGP_CAROLIEiJ_G0023657) #27 Sp9 (MGP_CAROLIEiJ_G0023656) #28 Ola1 (MGP_CAROLIEiJ_G0023655) #29 MGP_CAROLIEiJ_G0023654 Sp3 (MGP_CAROLIEiJ_G0023653) #30 Cdca7 (MGP_CAROLIEiJ_G0023652) #31 Map3k20 (MGP_CAROLIEiJ_G0023651) #32 Rapgef4 (MGP_CAROLIEiJ_G0023650) #33 Pdk1 (MGP_CAROLIEiJ_G0023649) #34 Itga6 (MGP_CAROLIEiJ_G0023648) #35 Dlx2 (MGP_CAROLIEiJ_G0023647) #36 Shrew mouse MODERN SPECIES 16 Mtx2 (MGP_PahariEiJ_G0025129) #10 Hoxd1 (MGP_PahariEiJ_G0025128) #11 MGP_PahariEiJ_G0025127 #13 Hoxd4 (MGP_PahariEiJ_G0025126) #13 Hoxd3 (MGP_PahariEiJ_G0025125) #12 Hoxd8 (MGP_PahariEiJ_G0025124) #14 Hoxd9 (MGP_PahariEiJ_G0025123) Hoxd10 (MGP_PahariEiJ_G0025122) #15 Hoxd11 (MGP_PahariEiJ_G0025121) #16 Hoxd12 (MGP_PahariEiJ_G0025120) #17 Hoxd13 (MGP_PahariEiJ_G0025119) Evx2 (MGP_PahariEiJ_G0025118) #18 Lnpk (MGP_PahariEiJ_G0025117) #19 Atp5g3 (MGP_PahariEiJ_G0025116) #20 Atf2 (MGP_PahariEiJ_G0025115) #21 MGP_PahariEiJ_G0025114 #22 Chrna1 (MGP_PahariEiJ_G0025113) #23 Wipf1 (MGP_PahariEiJ_G0025112) #24 Gpr155 (MGP_PahariEiJ_G0025111) #25 Scrn3 (MGP_PahariEiJ_G0025110) #26 MGP_PahariEiJ_G0025109 #27 Sp9 (MGP_PahariEiJ_G0025108) #28 Ola1 (MGP_PahariEiJ_G0025107) #29 MGP_PahariEiJ_G0025106 Sp3 (MGP_PahariEiJ_G0025105) #30 Cdca7 (MGP_PahariEiJ_G0025104) #31 Map3k20 (MGP_PahariEiJ_G0025103) #32 Rapgef4 (MGP_PahariEiJ_G0025102) #33 Pdk1 (MGP_PahariEiJ_G0025101) #34 Itga6 (MGP_PahariEiJ_G0025100) #35 Dlx2 (MGP_PahariEiJ_G0025099) #36 Rodentia_A ANCESTRAL SPECIES 13 ENSGT00940000153147.m.a.a.a.b.a.b #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00940000160029 #37 Sciuridae ANCESTRAL SPECIES 10 ENSGT00940000153147.m.a.a.a.b.a.b #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a.xb #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00940000160029 #37 Marmotini ANCESTRAL SPECIES 2 ENSGT00940000153147.m.a.a.a.b.a.b #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a.xb.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00940000160029 #37 Marmotini_b ANCESTRAL SPECIES 10 ENSGT00940000153147.m.a.a.a.b.a.b #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a.xb.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00940000160029 #37 Squirrel MODERN SPECIES 109 HNRNPA3 (ENSSTOG00000025125) #9 ENSSTOG00000030884 MTX2 (ENSSTOG00000014688) #10 HOXD1 (ENSSTOG00000012230) #11 HOXD3 (ENSSTOG00000014680) #12 HOXD4 (ENSSTOG00000029055) #13 ENSSTOG00000023453 #14 HOXD9 (ENSSTOG00000026761) HOXD10 (ENSSTOG00000003935) #15 HOXD12 (ENSSTOG00000004918) #17 HOXD13 (ENSSTOG00000004117) EVX2 (ENSSTOG00000014512) #18 LNPK (ENSSTOG00000014498) #19 ENSSTOG00000013572 #20 ATF2 (ENSSTOG00000014079) #21 CHN1 (ENSSTOG00000004301) #22 CHRNA1 (ENSSTOG00000004281) #23 ENSSTOG00000004271 #24 GPR155 (ENSSTOG00000001239) #25 SCRN3 (ENSSTOG00000001236) #26 CIR1 (ENSSTOG00000001233) #27 OLA1 (ENSSTOG00000015547) #29 SP3 (ENSSTOG00000023955) #30 ENSSTOG00000009026 #31 MAP3K20 (ENSSTOG00000022529) #32 RAPGEF4 (ENSSTOG00000001706) #33 PDK1 (ENSSTOG00000006473) #34 ITGA6 (ENSSTOG00000006442) #35 DLX2 (ENSSTOG00000019803) #36 DLX1 (ENSSTOG00000012969) #37 METAP1D (ENSSTOG00000012954) Arctic ground squirrel MODERN SPECIES 323 MTX2 (ENSUPAG00010020394) #10 ENSUPAG00010020400 HOXD1 (ENSUPAG00010020407) #11 HOXD3 (ENSUPAG00010020410) #12 HOXD4 (ENSUPAG00010020416) #13 HOXD8 (ENSUPAG00010020425) #14 HOXD9 (ENSUPAG00010020431) HOXD10 (ENSUPAG00010020434) #15 HOXD11 (ENSUPAG00010020439) #16 HOXD12 (ENSUPAG00010020440) #17 HOXD13 (ENSUPAG00010020441) EVX2 (ENSUPAG00010020442) #18 LNPK (ENSUPAG00010020452) #19 ENSUPAG00010020485 #20 ATF2 (ENSUPAG00010020491) #21 CHN1 (ENSUPAG00010020575) #22 CHRNA1 (ENSUPAG00010020641) #23 WIPF1 (ENSUPAG00010020649) #24 Alpin marmot MODERN SPECIES 5 AGPS (ENSMMMG00000023778) #7 NFE2L2 (ENSMMMG00000023776) #8 MTX2 (ENSMMMG00000023772) #10 HOXD3 (ENSMMMG00000023768) #12 HOXD4 (ENSMMMG00000023767) #13 ENSMMMG00000023765 #14 HOXD9 (ENSMMMG00000023764) HOXD10 (ENSMMMG00000023763) #15 ENSMMMG00000023762 #16 HOXD12 (ENSMMMG00000023760) #17 HOXD13 (ENSMMMG00000023759) LNPK (ENSMMMG00000023755) #19 ENSMMMG00000023748 #20 ATF2 (ENSMMMG00000023733) #21 ENSMMMG00000023730 CHN1 (ENSMMMG00000023718) #22 CHRNA1 (ENSMMMG00000023717) #23 WIPF1 (ENSMMMG00000023716) #24 ENSMMMG00000023714 GPR155 (ENSMMMG00000023705) #25 ENSMMMG00000023702 #26 ENSMMMG00000023700 #26 CIR1 (ENSMMMG00000023697) #27 OLA1 (ENSMMMG00000023695) #29 SP3 (ENSMMMG00000023692) #30 CDCA7 (ENSMMMG00000023690) #31 MAP3K20 (ENSMMMG00000023687) #32 RAPGEF4 (ENSMMMG00000023674) #33 PDK1 (ENSMMMG00000023665) #34 ITGA6 (ENSMMMG00000023663) #35 DLX2 (ENSMMMG00000023658) #36 Eurasian red squirrel MODERN SPECIES 12 ENSSVLG00005003881 #9 MTX2 (ENSSVLG00005003812) #10 HOXD1 (ENSSVLG00005003762) #11 HOXD4 (ENSSVLG00005003676) #13 HOXD8 (ENSSVLG00005003645) #14 HOXD9 (ENSSVLG00005003618) HOXD10 (ENSSVLG00005003599) #15 HOXD11 (ENSSVLG00005003581) #16 HOXD12 (ENSSVLG00005003565) #17 HOXD13 (ENSSVLG00005003554) EVX2 (ENSSVLG00005003539) #18 LNPK (ENSSVLG00005003500) #19 ENSSVLG00005003466 ENSSVLG00005003430 #20 ENSSVLG00005003279 #21 CHN1 (ENSSVLG00005003041) #22 CHRNA1 (ENSSVLG00005002856) #23 WIPF1 (ENSSVLG00005002786) #24 GPR155 (ENSSVLG00005002750) #25 SCRN3 (ENSSVLG00005002703) #26 CIR1 (ENSSVLG00005002678) #27 SP9 (ENSSVLG00005002657) #28 ENSSVLG00005002643 OLA1 (ENSSVLG00005002579) #29 ENSSVLG00005002549 SP3 (ENSSVLG00005002509) #30 CDCA7 (ENSSVLG00005002383) #31 ENSSVLG00005002309 ENSSVLG00005002282 RAPGEF4 (ENSSVLG00005001732) #33 PDK1 (ENSSVLG00005001413) #34 Hystricomorpha ANCESTRAL SPECIES 20 ENSGT00940000154808.a.a ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296.t #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00940000160029 #37 Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES 22 MTX2 (ENSHGLG00000004177) #10 HOXD1 (ENSHGLG00000004072) #11 HOXD3 (ENSHGLG00000003761) #12 HOXD4 (ENSHGLG00000037842) #13 ENSHGLG00000003577 #14 HOXD10 (ENSHGLG00000033462) #15 HOXD9 (ENSHGLG00000007185) HOXD11 (ENSHGLG00000034527) #16 HOXD12 (ENSHGLG00000005403) #17 HOXD13 (ENSHGLG00000050884) EVX2 (ENSHGLG00000004218) #18 LNPK (ENSHGLG00000004015) #19 ENSHGLG00000040802 Atp5mc3 (ENSHGLG00000033165) #20 ENSHGLG00000018805 #21 ENSHGLG00000016114 #22 CHRNA1 (ENSHGLG00000015432) #23 ENSHGLG00000039411 #24 ENSHGLG00000036822 #24 GPR155 (ENSHGLG00000012529) #25 SCRN3 (ENSHGLG00000010172) #26 CIR1 (ENSHGLG00000008097) #27 SP9 (ENSHGLG00000007443) #28 ENSHGLG00000040018 ENSHGLG00000046967 ENSHGLG00000006618 #29 SP3 (ENSHGLG00000007831) #30 ENSHGLG00000001810 ENSHGLG00000033105 ENSHGLG00000033114 CDCA7 (ENSHGLG00000004119) #31 Naked mole-rat female MODERN SPECIES 21 NIBAN3 (ENSHGLG00000018791) COLGALT1 (ENSHGLG00000019149) ENSHGLG00000009262 ENSHGLG00000036279 ENSHGLG00000042232 ENSHGLG00000033559 ENSHGLG00000050909 ENSHGLG00000045781 ENSHGLG00000039462 ENSHGLG00000003634 ENSHGLG00000046308 ENSHGLG00000044420 ENSHGLG00000049463 ENSHGLG00000035026 ENSHGLG00000044227 ENSHGLG00000032960 #22 ENSHGLG00000032173 ENSHGLG00000034587 ENSHGLG00000002680 ENSHGLG00000040658 ENSHGLG00000010518 S1PR4 (ENSHGLG00000042045) GNA15 (ENSHGLG00000033945) GNA11 (ENSHGLG00000035049) AES (ENSHGLG00000036417) TLE2 (ENSHGLG00000013600) ENSHGLG00000037855 ENSHGLG00000049208 ENSHGLG00000016167 FZR1 (ENSHGLG00000019224) ENSHGLG00000014588 Hystricomorpha_a ANCESTRAL SPECIES 17 ENSGT00940000154808.a.a ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296.t #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00940000160029 #37 Hystricomorpha_b ANCESTRAL SPECIES 24 ENSGT00940000154808.a.a ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296.t #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00940000160029 #37 Long-tailed chinchilla MODERN SPECIES 156 ATP5MC3 (ENSCLAG00000002573) #20 ATF2 (ENSCLAG00000002705) #21 CHN1 (ENSCLAG00000003215) #22 CHRNA1 (ENSCLAG00000003608) #23 ENSCLAG00000002683 #24 GPR155 (ENSCLAG00000002801) #25 SCRN3 (ENSCLAG00000003139) #26 CIR1 (ENSCLAG00000003669) #27 SP9 (ENSCLAG00000003831) #28 OLA1 (ENSCLAG00000008657) #29 SP3 (ENSCLAG00000008720) #30 ENSCLAG00000008943 ENSCLAG00000017678 CDCA7 (ENSCLAG00000003995) #31 ENSCLAG00000006706 RAPGEF4 (ENSCLAG00000003849) #33 PDK1 (ENSCLAG00000005471) #34 ITGA6 (ENSCLAG00000006496) #35 Degu MODERN SPECIES 106 HOXD1 (ENSODEG00000008961) #11 HOXD3 (ENSODEG00000009722) #12 HOXD4 (ENSODEG00000010297) #13 ENSODEG00000010496 #14 HOXD9 (ENSODEG00000008626) HOXD10 (ENSODEG00000010382) #15 ENSODEG00000010934 #16 HOXD12 (ENSODEG00000008376) #17 HOXD13 (ENSODEG00000008793) EVX2 (ENSODEG00000010771) #18 ENSODEG00000008992 LNPK (ENSODEG00000010046) #19 ENSODEG00000010385 ENSODEG00000010951 #20 ATF2 (ENSODEG00000010947) #21 CHN1 (ENSODEG00000008560) #22 CHRNA1 (ENSODEG00000010458) #23 ENSODEG00000019598 ENSODEG00000008975 #24 ENSODEG00000008878 #24 GPR155 (ENSODEG00000009263) #25 ENSODEG00000009961 #26 CIR1 (ENSODEG00000009325) #27 SP9 (ENSODEG00000009569) #28 OLA1 (ENSODEG00000009011) #29 ENSODEG00000010224 ENSODEG00000019637 SP3 (ENSODEG00000008679) #30 CDCA7 (ENSODEG00000009927) #31 ENSODEG00000009783 #32 RAPGEF4 (ENSODEG00000010386) #33 Guinea pig DUPLICATION Guinea pig MODERN SPECIES 3 ENSCPOG00000027250 MTX2 (ENSCPOG00000011099) #10 HOXD1 (ENSCPOG00000005509) #11 HOXD3 (ENSCPOG00000034932) #12 HOXD4 (ENSCPOG00000036552) #13 HOXD8 (ENSCPOG00000015005) #14 HOXD9 (ENSCPOG00000015006) HOXD10 (ENSCPOG00000011368) #15 ENSCPOG00000019766 #16 HOXD12 (ENSCPOG00000005496) #17 HOXD13 (ENSCPOG00000006722) EVX2 (ENSCPOG00000006711) #18 LNPK (ENSCPOG00000010971) #19 ATP5MC3 (ENSCPOG00000040161) #20 ATF2 (ENSCPOG00000004637) #21 ENSCPOG00000002789 #22 CHRNA1 (ENSCPOG00000000036) #23 ENSCPOG00000034131 #24 GPR155 (ENSCPOG00000010286) #25 SCRN3 (ENSCPOG00000010281) #26 CIR1 (ENSCPOG00000010275) #27 SP9 (ENSCPOG00000032651) #28 OLA1 (ENSCPOG00000031110) #29 SP3 (ENSCPOG00000002942) #30 CDCA7 (ENSCPOG00000011784) #31 MAP3K20 (ENSCPOG00000040705) #32 RAPGEF4 (ENSCPOG00000010605) #33 PDK1 (ENSCPOG00000008434) #34 ITGA6 (ENSCPOG00000008418) #35 DLX2 (ENSCPOG00000040000) #36 DLX1 (ENSCPOG00000040135) #37 Guinea pig MODERN SPECIES 94 ENSCPOG00000027159 ENSCPOG00000001770 #22 ENSCPOG00000021568 ENSCPOG00000002569 YTHDC1 (ENSCPOG00000010929) TMPRSS11E (ENSCPOG00000012804) ENSCPOG00000026992 TMPRSS11F (ENSCPOG00000031769) ENSCPOG00000025643 TMPRSS11A (ENSCPOG00000036189) TMPRSS11D (ENSCPOG00000010047) ENSCPOG00000034504 GNRHR (ENSCPOG00000014609) UBA6 (ENSCPOG00000001877) STAP1 (ENSCPOG00000001874) CENPC (ENSCPOG00000001871) ENSCPOG00000035209 Lagomorpha ANCESTRAL SPECIES 12 ENSGT00940000153147.m.a.a.a.b.a.b #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160029 #37 ENSGT00940000157735 ENSGT00390000007069 ENSGT00940000155963 Rabbit MODERN SPECIES 18 ENSOCUG00000025666 MTX2 (ENSOCUG00000008760) #10 HOXD1 (ENSOCUG00000015582) #11 HOXD3 (ENSOCUG00000014119) #12 HOXD4 (ENSOCUG00000002413) #13 ENSOCUG00000035940 #14 HOXD9 (ENSOCUG00000023956) HOXD10 (ENSOCUG00000008964) #15 HOXD11 (ENSOCUG00000013942) #16 HOXD12 (ENSOCUG00000002412) #17 HOXD13 (ENSOCUG00000029547) EVX2 (ENSOCUG00000032776) #18 LNPK (ENSOCUG00000008962) #19 ATP5MC3 (ENSOCUG00000012164) #20 ATF2 (ENSOCUG00000012156) #21 CHN1 (ENSOCUG00000008134) #22 CHRNA1 (ENSOCUG00000024814) #23 ENSOCUG00000005696 ENSOCUG00000036607 GPR155 (ENSOCUG00000003683) #25 SCRN3 (ENSOCUG00000011499) #26 CIR1 (ENSOCUG00000029298) #27 ENSOCUG00000037146 OLA1 (ENSOCUG00000003574) #29 SP3 (ENSOCUG00000026678) #30 ENSOCUG00000030823 CDCA7 (ENSOCUG00000001759) #31 ENSOCUG00000030479 MAP3K20 (ENSOCUG00000015053) #32 ENSOCUG00000020911 RAPGEF4 (ENSOCUG00000015032) #33 Pika MODERN SPECIES 958 ATF2 (ENSOPRG00000003853) #21 CHN1 (ENSOPRG00000003821) #22 Tree shrew MODERN SPECIES 1857 CHN1 (ENSTBEG00000012750) #22 CHRNA1 (ENSTBEG00000012554) #23 Primates ANCESTRAL SPECIES 13 ENSGT00940000153147.m.a.a.a.b.a.b #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00940000160029 #37 Strepsirrhini ANCESTRAL SPECIES 10 ENSGT00940000153147.m.a.a.a.b.a.a ##9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00940000160029 #37 Lemuriformes ANCESTRAL SPECIES 5 ENSGT00940000153147.m.a.a.a.b.a.a ##9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b.v.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00940000160029 #37 Mouse lemur MODERN SPECIES 30 ENSMICG00000027841 ##9 MTX2 (ENSMICG00000004295) #10 HOXD1 (ENSMICG00000044650) #11 HOXD3 (ENSMICG00000004286) #12 HOXD4 (ENSMICG00000043209) #13 HOXD8 (ENSMICG00000004277) #14 HOXD9 (ENSMICG00000031229) HOXD10 (ENSMICG00000028373) #15 HOXD11 (ENSMICG00000048033) #16 HOXD12 (ENSMICG00000002172) #17 HOXD13 (ENSMICG00000002170) EVX2 (ENSMICG00000035343) #18 LNPK (ENSMICG00000027707) #19 ATP5MC3 (ENSMICG00000006421) #20 ATF2 (ENSMICG00000006417) #21 CHN1 (ENSMICG00000014292) #22 ENSMICG00000038672 CHRNA1 (ENSMICG00000014284) #23 ENSMICG00000031974 GPR155 (ENSMICG00000000369) #25 SCRN3 (ENSMICG00000000366) #26 CIR1 (ENSMICG00000026886) #27 SP9 (ENSMICG00000031506) #28 ENSMICG00000007356 ENSMICG00000000354 #29 SP3 (ENSMICG00000014796) #30 CDCA7 (ENSMICG00000016991) #31 MAP3K20 (ENSMICG00000011055) #32 RAPGEF4 (ENSMICG00000011026) #33 PDK1 (ENSMICG00000007005) #34 ITGA6 (ENSMICG00000006990) #35 Lemuriformes_a ANCESTRAL SPECIES 69 ENSGT00940000153147.m.a.a.a.b.a.a ##9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b.v.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00940000160029 #37 Greater bamboo lemur MODERN SPECIES 243 HOXD1 (ENSPSMG00000024516) #11 ENSPSMG00000024512 HOXD3 (ENSPSMG00000024507) #12 HOXD4 (ENSPSMG00000024504) #13 HOXD8 (ENSPSMG00000024501) #14 HOXD9 (ENSPSMG00000024487) HOXD10 (ENSPSMG00000024482) #15 HOXD11 (ENSPSMG00000024479) #16 HOXD12 (ENSPSMG00000024476) #17 HOXD13 (ENSPSMG00000024474) EVX2 (ENSPSMG00000024469) #18 ENSPSMG00000024465 LNPK (ENSPSMG00000024460) #19 ATP5MC3 (ENSPSMG00000024446) #20 ATF2 (ENSPSMG00000024416) #21 CHN1 (ENSPSMG00000024301) #22 CHRNA1 (ENSPSMG00000024264) #23 WIPF1 (ENSPSMG00000024219) #24 GPR155 (ENSPSMG00000024199) #25 SCRN3 (ENSPSMG00000024170) #26 CIR1 (ENSPSMG00000024153) #27 SP9 (ENSPSMG00000024136) #28 OLA1 (ENSPSMG00000024129) #29 SP3 (ENSPSMG00000024117) #30 CDCA7 (ENSPSMG00000024083) #31 ENSPSMG00000024060 MAP3K20 (ENSPSMG00000024048) #32 RAPGEF4 (ENSPSMG00000023978) #33 PDK1 (ENSPSMG00000023879) #34 ITGA6 (ENSPSMG00000023755) #35 DLX2 (ENSPSMG00000023598) #36 Coquerels sifaka MODERN SPECIES 478 NFE2L2 (ENSPCOG00000007362) #8 MTX2 (ENSPCOG00000025077) #10 HOXD1 (ENSPCOG00000024445) #11 HOXD3 (ENSPCOG00000017195) #12 HOXD4 (ENSPCOG00000018337) #13 HOXD8 (ENSPCOG00000024233) #14 HOXD9 (ENSPCOG00000026809) HOXD10 (ENSPCOG00000023637) #15 HOXD11 (ENSPCOG00000015055) #16 HOXD12 (ENSPCOG00000022036) #17 HOXD13 (ENSPCOG00000018735) EVX2 (ENSPCOG00000022416) #18 LNPK (ENSPCOG00000026983) #19 ATP5MC3 (ENSPCOG00000016374) #20 ATF2 (ENSPCOG00000025416) #21 CHN1 (ENSPCOG00000018830) #22 CHRNA1 (ENSPCOG00000020642) #23 ENSPCOG00000015733 ENSPCOG00000018466 GPR155 (ENSPCOG00000014376) #25 SCRN3 (ENSPCOG00000015456) #26 CIR1 (ENSPCOG00000014298) #27 SP9 (ENSPCOG00000018883) #28 ENSPCOG00000017353 #29 SP3 (ENSPCOG00000017224) #30 CDCA7 (ENSPCOG00000001432) #31 MAP3K20 (ENSPCOG00000027012) #32 RAPGEF4 (ENSPCOG00000022261) #33 PDK1 (ENSPCOG00000009920) #34 ITGA6 (ENSPCOG00000020776) #35 DLX2 (ENSPCOG00000010310) #36 Bushbaby MODERN SPECIES 163 HOXD1 (ENSOGAG00000015712) #11 HOXD3 (ENSOGAG00000015710) #12 HOXD4 (ENSOGAG00000029168) #13 HOXD8 (ENSOGAG00000015707) #14 HOXD9 (ENSOGAG00000015697) HOXD10 (ENSOGAG00000015694) #15 HOXD11 (ENSOGAG00000029520) #16 HOXD12 (ENSOGAG00000015689) #17 HOXD13 (ENSOGAG00000027055) EVX2 (ENSOGAG00000025378) #18 LNPK (ENSOGAG00000030372) #19 ENSOGAG00000030354 ENSOGAG00000026184 ATP5MC3 (ENSOGAG00000027578) #20 ATF2 (ENSOGAG00000011373) #21 CHN1 (ENSOGAG00000000894) #22 CHRNA1 (ENSOGAG00000000890) #23 WIPF1 (ENSOGAG00000016579) #24 GPR155 (ENSOGAG00000016571) #25 SCRN3 (ENSOGAG00000016569) #26 CIR1 (ENSOGAG00000016564) #27 SP9 (ENSOGAG00000034062) #28 OLA1 (ENSOGAG00000016557) #29 SP3 (ENSOGAG00000026846) #30 CDCA7 (ENSOGAG00000000508) #31 ENSOGAG00000014054 #32 ENSOGAG00000033209 RAPGEF4 (ENSOGAG00000014048) #33 Haplorrhini ANCESTRAL SPECIES 10 ENSGT00940000153147.m.a.a.a.b.a.b #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00940000160029 #37 Tarsier MODERN SPECIES 5208 GAL3ST4 (ENSTSYG00000036714) GPC2 (ENSTSYG00000025495) ATF2 (ENSTSYG00000002606) #21 CHN1 (ENSTSYG00000004837) #22 CHRNA1 (ENSTSYG00000005526) #23 Simiiformes ANCESTRAL SPECIES 15 ENSGT00940000153147.m.a.a.a.b.a.b #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099.a #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00940000160029 #37 Platyrrhini ANCESTRAL SPECIES 9 ENSGT00940000153147.m.a.a.a.b.a.b #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099.a #30 ENSGT00940000155436.o.a.b #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00940000160029 #37 Cebidae ANCESTRAL SPECIES 11 ENSGT00940000153147.m.a.a.a.b.a.b #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099.a #30 ENSGT00940000155436.o.a.a #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00940000160029 #37 Marmoset MODERN SPECIES 18 HOXD3 (ENSCJAG00000063715) #12 HOXD4 (ENSCJAG00000008286) #13 HOXD8 (ENSCJAG00000008284) #14 HOXD9 (ENSCJAG00000046789) HOXD10 (ENSCJAG00000008269) #15 HOXD11 (ENSCJAG00000048503) #16 HOXD12 (ENSCJAG00000079626) #17 HOXD13 (ENSCJAG00000040882) EVX2 (ENSCJAG00000077487) #18 LNPK (ENSCJAG00000008226) #19 ENSCJAG00000022954 ENSCJAG00000084464 ENSCJAG00000080703 ATP5MC3 (ENSCJAG00000008207) #20 ATF2 (ENSCJAG00000008085) #21 CHN1 (ENSCJAG00000008041) #22 CHRNA1 (ENSCJAG00000008007) #23 WIPF1 (ENSCJAG00000048519) #24 GPR155 (ENSCJAG00000007947) #25 SCRN3 (ENSCJAG00000007909) #26 CIR1 (ENSCJAG00000007884) #27 ENSCJAG00000081398 SP9 (ENSCJAG00000061755) #28 OLA1 (ENSCJAG00000007877) #29 SP3 (ENSCJAG00000007851) #30 CDCA7 (ENSCJAG00000007809) #31 MAP3K20 (ENSCJAG00000007736) #32 RAPGEF4 (ENSCJAG00000007525) #33 PDK1 (ENSCJAG00000007507) #34 ITGA6 (ENSCJAG00000007399) #35 ENSCJAG00000012387 Cebidae_a ANCESTRAL SPECIES 27 ENSGT00940000153147.m.a.a.a.b.a.b #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00940000155099.a #30 ENSGT00940000155436.o.a.b #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00940000160029 #37 ENSGT00940000157735 Bolivian squirrel monkey MODERN SPECIES 46 NFE2L2 (ENSSBOG00000022740) #8 HNRNPA3 (ENSSBOG00000034307) #9 MTX2 (ENSSBOG00000025795) #10 HOXD1 (ENSSBOG00000030906) #11 HOXD3 (ENSSBOG00000031894) #12 HOXD4 (ENSSBOG00000031535) #13 ENSSBOG00000029405 #14 HOXD9 (ENSSBOG00000031095) HOXD10 (ENSSBOG00000020553) #15 HOXD12 (ENSSBOG00000025723) #17 HOXD13 (ENSSBOG00000032579) EVX2 (ENSSBOG00000034364) #18 LNPK (ENSSBOG00000023054) #19 ATP5MC3 (ENSSBOG00000022688) #20 ATF2 (ENSSBOG00000025461) #21 CHN1 (ENSSBOG00000016307) #22 CHRNA1 (ENSSBOG00000035763) #23 WIPF1 (ENSSBOG00000032169) #24 GPR155 (ENSSBOG00000034957) #25 SCRN3 (ENSSBOG00000033089) #26 CIR1 (ENSSBOG00000028527) #27 ENSSBOG00000020259 ##9 ENSSBOG00000002999 #29 SP3 (ENSSBOG00000035329) #30 ENSSBOG00000029333 #31 MAP3K20 (ENSSBOG00000023872) #32 RAPGEF4 (ENSSBOG00000031049) #33 PDK1 (ENSSBOG00000019615) #34 ITGA6 (ENSSBOG00000032166) #35 ENSSBOG00000035010 DLX2 (ENSSBOG00000028830) #36 Capuchin MODERN SPECIES 110 ENSCCAG00000035403 #13 HOXD8 (ENSCCAG00000001172) #14 HOXD9 (ENSCCAG00000021007) HOXD10 (ENSCCAG00000020764) #15 HOXD11 (ENSCCAG00000034968) #16 HOXD12 (ENSCCAG00000026325) #17 HOXD13 (ENSCCAG00000032945) EVX2 (ENSCCAG00000032502) #18 LNPK (ENSCCAG00000022702) #19 ENSCCAG00000015947 ENSCCAG00000020514 #20 ATF2 (ENSCCAG00000035902) #21 ENSCCAG00000034541 CHN1 (ENSCCAG00000027038) #22 CHRNA1 (ENSCCAG00000032209) #23 WIPF1 (ENSCCAG00000012994) #24 GPR155 (ENSCCAG00000032455) #25 SCRN3 (ENSCCAG00000022566) #26 CIR1 (ENSCCAG00000030492) #27 SP9 (ENSCCAG00000031565) #28 ENSCCAG00000035969 ENSCCAG00000028608 OLA1 (ENSCCAG00000017844) #29 SP3 (ENSCCAG00000024347) #30 ENSCCAG00000033554 #31 MAP3K20 (ENSCCAG00000029605) #32 RAPGEF4 (ENSCCAG00000034923) #33 PDK1 (ENSCCAG00000023566) #34 ITGA6 (ENSCCAG00000022463) #35 Mas night monkey MODERN SPECIES 572 ENSANAG00000024757 #21 CHN1 (ENSANAG00000024164) #22 CHRNA1 (ENSANAG00000022062) #23 Catarrhini ANCESTRAL SPECIES 16 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00910000147400 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099.a #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00910000146880 ENSGT01030000234646.B.a.a.b #34 ENSGT00910000148590 ENSGT00940000155353 #35 Hominoidea ANCESTRAL SPECIES 15 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00910000147400 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000008029.v ENSGT00940000167313 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b.a.a #29 ENSGT00940000155099.a #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00910000146880 ENSGT01030000234646.B.a.a.b #34 Gibbon MODERN SPECIES 14 MTX2 (ENSNLEG00000006020) #10 HOXD1 (ENSNLEG00000006019) #11 ENSNLEG00000027160 HOXD3 (ENSNLEG00000006018) #12 HOXD4 (ENSNLEG00000006014) #13 ENSNLEG00000006003 #14 HOXD9 (ENSNLEG00000006011) HOXD10 (ENSNLEG00000006010) #15 HOXD12 (ENSNLEG00000006006) #17 HOXD13 (ENSNLEG00000029303) EVX2 (ENSNLEG00000005999) #18 LNPK (ENSNLEG00000005977) #19 ATP5MC3 (ENSNLEG00000005971) #20 ATF2 (ENSNLEG00000005938) #21 ENSNLEG00000028605 CHN1 (ENSNLEG00000005923) #22 CHRNA1 (ENSNLEG00000005914) #23 WIPF1 (ENSNLEG00000005907) #24 ENSNLEG00000033625 GPR155 (ENSNLEG00000005896) #25 SCRN3 (ENSNLEG00000005880) #26 ENSNLEG00000005869 #27 ENSNLEG00000033171 ENSNLEG00000030268 OLA1 (ENSNLEG00000005817) #29 SP3 (ENSNLEG00000005812) #30 ENSNLEG00000036050 ENSNLEG00000031261 CDCA7 (ENSNLEG00000005787) #31 MAP3K20 (ENSNLEG00000005760) #32 ENSNLEG00000033045 Hominidae ANCESTRAL SPECIES 17 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00910000147400 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000008029.v ENSGT00940000167313 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b.a.a #29 ENSGT00940000155099.a #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00910000146880 ENSGT01030000234646.B.a.a.b #34 Orangutan MODERN SPECIES 15 ENSPPYG00000037565 HOXD1 (ENSPPYG00000012964) #11 HOXD3 (ENSPPYG00000012963) #12 HOXD4 (ENSPPYG00000034536) #13 HOXD8 (ENSPPYG00000037201) #14 HOXD9 (ENSPPYG00000012959) HOXD10 (ENSPPYG00000012958) #15 HOXD11 (ENSPPYG00000031598) #16 HOXD12 (ENSPPYG00000012957) #17 HOXD13 (ENSPPYG00000012956) EVX2 (ENSPPYG00000012955) #18 LNPK (ENSPPYG00000032630) #19 ATP5MC3 (ENSPPYG00000037033) #20 ENSPPYG00000041465 ATF2 (ENSPPYG00000012951) #21 CHN1 (ENSPPYG00000012950) #22 CHRNA1 (ENSPPYG00000012949) #23 WIPF1 (ENSPPYG00000012948) #24 GPR155 (ENSPPYG00000012947) #25 ENSPPYG00000012946 #26 ENSPPYG00000012945 #27 SP9 (ENSPPYG00000033437) #28 OLA1 (ENSPPYG00000012943) #29 SP3 (ENSPPYG00000012941) #30 CDCA7 (ENSPPYG00000012940) #31 MAP3K20 (ENSPPYG00000012939) #32 RAPGEF4 (ENSPPYG00000012938) #33 PDK1 (ENSPPYG00000012937) #34 ITGA6 (ENSPPYG00000012936) #35 DLX2 (ENSPPYG00000012935) #36 DLX1 (ENSPPYG00000035109) #37 Homo/Pan/Gorilla group ANCESTRAL SPECIES 14 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00910000147400 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000008029.v ENSGT00940000167313 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b.a.a #29 ENSGT00940000155099.a #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00910000146880 ENSGT01030000234646.B.a.a.b #34 Gorilla MODERN SPECIES 15 ENSGGOG00000041480 HOXD1 (ENSGGOG00000001348) #11 ENSGGOG00000037792 HOXD3 (ENSGGOG00000037089) #12 HOXD4 (ENSGGOG00000042533) #13 ENSGGOG00000009898 #14 HOXD9 (ENSGGOG00000001343) HOXD10 (ENSGGOG00000001341) #15 ENSGGOG00000044084 ENSGGOG00000038035 #17 ENSGGOG00000041387 EVX2 (ENSGGOG00000001335) #18 LNPK (ENSGGOG00000007852) #19 ATP5MC3 (ENSGGOG00000036796) #20 ATF2 (ENSGGOG00000027461) #21 CHN1 (ENSGGOG00000002177) #22 CHRNA1 (ENSGGOG00000008036) #23 WIPF1 (ENSGGOG00000016773) #24 ENSGGOG00000005480 GPR155 (ENSGGOG00000004876) #25 SCRN3 (ENSGGOG00000034896) #26 SP9 (ENSGGOG00000007345) #28 OLA1 (ENSGGOG00000022215) #29 SP3 (ENSGGOG00000011699) #30 ENSGGOG00000041228 ENSGGOG00000041018 ENSGGOG00000042056 CDCA7 (ENSGGOG00000024973) #31 MAP3K20 (ENSGGOG00000005714) #32 ENSGGOG00000038487 RAPGEF4 (ENSGGOG00000009121) #33 Homo/Pan group ANCESTRAL SPECIES 13 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00910000147400 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000008029.v ENSGT00940000167313 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b.a.a #29 ENSGT00940000155099.a #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00910000146880 ENSGT01030000234646.B.a.a.b #34 Human MODERN SPECIES 11 HNRNPA3 (ENSG00000170144) #9 MTX2 (ENSG00000128654) #10 HOXD1 (ENSG00000128645) #11 HOXD4 (ENSG00000170166) #13 HOXD3 (ENSG00000128652) #12 HOXD8 (ENSG00000175879) #14 HOXD9 (ENSG00000128709) HOXD10 (ENSG00000128710) #15 HOXD11 (ENSG00000128713) #16 HOXD12 (ENSG00000170178) #17 HOXD13 (ENSG00000128714) EVX2 (ENSG00000174279) #18 LNPK (ENSG00000144320) #19 ATP5MC3 (ENSG00000154518) #20 ATF2 (ENSG00000115966) #21 CHN1 (ENSG00000128656) #22 CHRNA1 (ENSG00000138435) #23 WIPF1 (ENSG00000115935) #24 GPR155 (ENSG00000163328) #25 SCRN3 (ENSG00000144306) #26 CIR1 (ENSG00000138433) #27 SP9 (ENSG00000217236) #28 OLA1 (ENSG00000138430) #29 SP3 (ENSG00000172845) #30 CDCA7 (ENSG00000144354) #31 MAP3K20 (ENSG00000091436) #32 RAPGEF4 (ENSG00000091428) #33 PDK1 (ENSG00000152256) #34 ITGA6 (ENSG00000091409) #35 DLX2 (ENSG00000115844) #36 DLX1 (ENSG00000144355) #37 Pan ANCESTRAL SPECIES 12 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00910000147400 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000008029.v ENSGT00940000167313 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b.a.a #29 ENSGT00940000155099.a #30 ENSGT00950000183087.B ENSGT00940000153137.a.a.h ENSGT00940000162422 ENSGT00940000155436 #31 ENSGT00940000161352 #32 Chimpanzee MODERN SPECIES 15 ENSPTRG00000023851 HOXD1 (ENSPTRG00000052716) #11 ENSPTRG00000051348 HOXD3 (ENSPTRG00000012672) #12 HOXD4 (ENSPTRG00000051862) #13 HOXD8 (ENSPTRG00000012669) #14 HOXD9 (ENSPTRG00000043464) HOXD10 (ENSPTRG00000012667) #15 HOXD11 (ENSPTRG00000012666) #16 HOXD12 (ENSPTRG00000012665) #17 HOXD13 (ENSPTRG00000012664) EVX2 (ENSPTRG00000012663) #18 LNPK (ENSPTRG00000012662) #19 ATP5MC3 (ENSPTRG00000047314) #20 ATF2 (ENSPTRG00000012660) #21 CHN1 (ENSPTRG00000012659) #22 CHRNA1 (ENSPTRG00000012658) #23 WIPF1 (ENSPTRG00000012656) GPR155 (ENSPTRG00000012655) #25 SCRN3 (ENSPTRG00000012653) #26 CIR1 (ENSPTRG00000012652) #27 SP9 (ENSPTRG00000045805) #28 OLA1 (ENSPTRG00000012650) #29 SP3 (ENSPTRG00000012647) #30 ENSPTRG00000044219 ENSPTRG00000051676 ENSPTRG00000052501 CDCA7 (ENSPTRG00000012645) #31 MAP3K20 (ENSPTRG00000012644) #32 ENSPTRG00000052310 RAPGEF4 (ENSPTRG00000012643) #33 Bonobo MODERN SPECIES 15 ENSPPAG00000025118 ENSPPAG00000031665 #11 ENSPPAG00000013988 HOXD3 (ENSPPAG00000031713) #12 HOXD4 (ENSPPAG00000034992) #13 ENSPPAG00000034189 #14 HOXD9 (ENSPPAG00000039242) HOXD10 (ENSPPAG00000036046) #15 ENSPPAG00000028125 #16 HOXD12 (ENSPPAG00000017089) #17 ENSPPAG00000010483 ENSPPAG00000039855 #18 LNPK (ENSPPAG00000030440) #19 ATP5MC3 (ENSPPAG00000036512) #20 ATF2 (ENSPPAG00000027656) #21 ENSPPAG00000023882 #22 CHRNA1 (ENSPPAG00000024985) #23 WIPF1 (ENSPPAG00000037968) #24 ENSPPAG00000040473 GPR155 (ENSPPAG00000032733) #25 SCRN3 (ENSPPAG00000032328) #26 CIR1 (ENSPPAG00000041485) #27 OLA1 (ENSPPAG00000035004) #29 SP3 (ENSPPAG00000028328) #30 ENSPPAG00000037850 ENSPPAG00000027126 CDCA7 (ENSPPAG00000040919) #31 MAP3K20 (ENSPPAG00000000371) #32 RAPGEF4 (ENSPPAG00000037991) #33 ENSPPAG00000041264 PDK1 (ENSPPAG00000042696) #34 Cercopithecidae ANCESTRAL SPECIES 13 ENSGT00940000161892 #11 ENSGT00910000147400 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00950000182827.A.i.b ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135.g #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099.a #30 ENSGT00940000162422.d ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00910000146880 ENSGT01030000234646.B.a.a.b #34 ENSGT00910000148590 Cercopithecinae ANCESTRAL SPECIES 11 ENSGT00940000161892 #11 ENSGT00910000147400 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00950000182827.A.i.b ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135.g #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099.a #30 ENSGT00940000162422.d ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00910000146880 ENSGT01030000234646.B.a.a.b #34 ENSGT00910000148590 Vervet Monkey MODERN SPECIES 1 NFE2L2 (ENSCSAG00000014353) #8 ENSCSAG00000014399 #9 MTX2 (ENSCSAG00000014412) #10 HOXD1 (ENSCSAG00000014419) #11 HOXD3 (ENSCSAG00000014422) #12 HOXD4 (ENSCSAG00000014429) #13 HOXD8 (ENSCSAG00000014437) #14 HOXD9 (ENSCSAG00000014441) HOXD10 (ENSCSAG00000014448) #15 HOXD11 (ENSCSAG00000014457) #16 HOXD12 (ENSCSAG00000014464) #17 HOXD13 (ENSCSAG00000014475) EVX2 (ENSCSAG00000014486) #18 LNPK (ENSCSAG00000014506) #19 ATF2 (ENSCSAG00000014523) #21 CHN1 (ENSCSAG00000014539) #22 CHRNA1 (ENSCSAG00000014545) #23 WIPF1 (ENSCSAG00000014556) #24 GPR155 (ENSCSAG00000014572) #25 SCRN3 (ENSCSAG00000014584) #26 CIR1 (ENSCSAG00000014627) #27 SP9 (ENSCSAG00000014648) #28 OLA1 (ENSCSAG00000014670) #29 SP3 (ENSCSAG00000014689) #30 CDCA7 (ENSCSAG00000014699) #31 ENSCSAG00000014701 ENSCSAG00000014706 #32 RAPGEF4 (ENSCSAG00000014720) #33 PDK1 (ENSCSAG00000014733) #34 ITGA6 (ENSCSAG00000014750) #35 DLX2 (ENSCSAG00000014766) #36 Cercopithecinae_a ANCESTRAL SPECIES 16 ENSGT00910000147400 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00950000182922.a.a.a.b.a.a.b.b ENSGT00390000001859 #19 ENSGT00950000182827.A.i.b ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00940000165163 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135.g #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099.a #30 ENSGT00940000162422.d ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00910000146880 ENSGT01030000234646.B.a.a.b #34 Macaca ANCESTRAL SPECIES 15 ENSGT00910000147400 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00950000182827.A.i.b ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT00390000018390.jc.n ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00940000165163 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135.g #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099.a #30 ENSGT00940000162422.d ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00910000146880 ENSGT01030000234646.B.a.a.b #34 Macaca_a ANCESTRAL SPECIES 17 ENSGT00940000161892 #11 ENSGT00910000147400 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00950000182827.A.j ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00940000166143.A.a.b.b.b.b.a.b.b ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135.g #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099.a #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00980000202811 ENSGT00940000155353 #35 Crab-eating macaque MODERN SPECIES 3 HOXD1 (ENSMFAG00000046035) #11 ENSMFAG00000047422 HOXD3 (ENSMFAG00000034065) #12 HOXD4 (ENSMFAG00000052240) #13 HOXD8 (ENSMFAG00000065214) #14 HOXD9 (ENSMFAG00000000099) HOXD10 (ENSMFAG00000031117) #15 ENSMFAG00000043724 #16 HOXD12 (ENSMFAG00000051547) #17 HOXD13 (ENSMFAG00000033237) ENSMFAG00000053875 LNPK (ENSMFAG00000002105) #19 ENSMFAG00000002936 ATP5MC3 (ENSMFAG00000056189) #20 ATF2 (ENSMFAG00000002278) #21 CHN1 (ENSMFAG00000002404) #22 CHRNA1 (ENSMFAG00000042992) #23 WIPF1 (ENSMFAG00000034165) #24 ENSMFAG00000060672 ENSMFAG00000039499 ENSMFAG00000056942 SCRN3 (ENSMFAG00000042925) #26 GPR155 (ENSMFAG00000035341) #25 SP9 (ENSMFAG00000035384) #28 OLA1 (ENSMFAG00000044124) #29 ENSMFAG00000052622 SP3 (ENSMFAG00000001253) #30 ENSMFAG00000051912 CDCA7 (ENSMFAG00000033844) #31 MAP3K20 (ENSMFAG00000001160) #32 RAPGEF4 (ENSMFAG00000044653) #33 Rhesus MODERN SPECIES 3 MTX2 (ENSMMUG00000010185) #10 HOXD1 (ENSMMUG00000065344) #11 ENSMMUG00000052177 HOXD3 (ENSMMUG00000051761) #12 HOXD4 (ENSMMUG00000060947) #13 HOXD8 (ENSMMUG00000023504) #14 HOXD9 (ENSMMUG00000032599) HOXD10 (ENSMMUG00000046368) #15 HOXD11 (ENSMMUG00000047915) #16 HOXD12 (ENSMMUG00000023501) #17 HOXD13 (ENSMMUG00000055831) EVX2 (ENSMMUG00000061506) #18 LNPK (ENSMMUG00000023498) #19 ATP5MC3 (ENSMMUG00000003954) #20 ATF2 (ENSMMUG00000003947) #21 CHN1 (ENSMMUG00000021797) #22 CHRNA1 (ENSMMUG00000021796) #23 WIPF1 (ENSMMUG00000009593) #24 ENSMMUG00000053004 GPR155 (ENSMMUG00000021012) #25 SCRN3 (ENSMMUG00000023009) #26 CIR1 (ENSMMUG00000023006) #27 SP9 (ENSMMUG00000023005) #28 OLA1 (ENSMMUG00000007092) #29 ENSMMUG00000060201 SP3 (ENSMMUG00000021818) #30 ENSMMUG00000010554 CDCA7 (ENSMMUG00000014228) #31 MAP3K20 (ENSMMUG00000014672) #32 RAPGEF4 (ENSMMUG00000020792) #33 PDK1 (ENSMMUG00000022553) #34 Pig-tailed macaque MODERN SPECIES 585 ENSMNEG00000018849 HOXD3 (ENSMNEG00000040202) #12 HOXD4 (ENSMNEG00000030845) #13 HOXD8 (ENSMNEG00000028133) #14 HOXD9 (ENSMNEG00000044938) HOXD10 (ENSMNEG00000033923) #15 HOXD11 (ENSMNEG00000029127) #16 HOXD12 (ENSMNEG00000002891) #17 HOXD13 (ENSMNEG00000027142) EVX2 (ENSMNEG00000028323) #18 ENSMNEG00000024050 LNPK (ENSMNEG00000028702) #19 ENSMNEG00000035184 ATP5MC3 (ENSMNEG00000029106) #20 ATF2 (ENSMNEG00000037988) #21 CHN1 (ENSMNEG00000033120) #22 ENSMNEG00000009103 CHRNA1 (ENSMNEG00000043912) #23 WIPF1 (ENSMNEG00000045560) #24 ENSMNEG00000031252 GPR155 (ENSMNEG00000028550) #25 SCRN3 (ENSMNEG00000035295) #26 CIR1 (ENSMNEG00000045151) #27 SP9 (ENSMNEG00000034757) #28 OLA1 (ENSMNEG00000040767) #29 SP3 (ENSMNEG00000042516) #30 ENSMNEG00000039997 CDCA7 (ENSMNEG00000033719) #31 MAP3K20 (ENSMNEG00000044858) #32 RAPGEF4 (ENSMNEG00000030581) #33 ENSMNEG00000040448 Cercopithecinae_b ANCESTRAL SPECIES 10 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00950000182922.a.a.a.b.a.a.b.b ENSGT00390000001859 #19 ENSGT00950000182827.A.j ENSGT00950000182827.A.i.b ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00940000165163 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135.g #27 ENSGT00940000162304 #28 ENSGT00950000183198.c.b.a ENSGT00390000000673.b #29 ENSGT00940000155099.a #30 ENSGT00940000162422.d ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00910000146880 Olive baboon MODERN SPECIES 1 MTX2 (ENSPANG00000013333) #10 HOXD1 (ENSPANG00000009593) #11 HOXD3 (ENSPANG00000000543) #12 HOXD4 (ENSPANG00000000542) #13 HOXD8 (ENSPANG00000049199) #14 HOXD9 (ENSPANG00000001061) HOXD10 (ENSPANG00000050198) #15 HOXD11 (ENSPANG00000049530) #16 ENSPANG00000044332 #17 ENSPANG00000044695 ENSPANG00000039545 #18 LNPK (ENSPANG00000011787) #19 ATP5MC3 (ENSPANG00000031591) #20 ATF2 (ENSPANG00000004806) #21 ENSPANG00000005473 CHN1 (ENSPANG00000008236) #22 CHRNA1 (ENSPANG00000007790) #23 WIPF1 (ENSPANG00000019541) #24 GPR155 (ENSPANG00000006559) #25 SCRN3 (ENSPANG00000001316) #26 CIR1 (ENSPANG00000033102) #27 SP9 (ENSPANG00000051025) #28 ENSPANG00000035758 OLA1 (ENSPANG00000020854) #29 ENSPANG00000037160 SP3 (ENSPANG00000005418) #30 ENSPANG00000050966 CDCA7 (ENSPANG00000024998) #31 MAP3K20 (ENSPANG00000000071) #32 RAPGEF4 (ENSPANG00000007791) #33 PDK1 (ENSPANG00000018423) #34 Cercopithecinae_d ANCESTRAL SPECIES ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00950000182922.a.a.a.b.a.a.b.b ENSGT00390000001859 #19 ENSGT00950000182827.A.j ENSGT00950000182827.A.i.b ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00940000165163 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135.g #27 ENSGT00940000162304 #28 ENSGT00950000183198.c.b.a ENSGT00390000000673.b #29 ENSGT00940000155099.a #30 ENSGT00940000162422.d ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00910000146880 Drill MODERN SPECIES 1072 MTX2 (ENSMLEG00000002029) #10 HOXD1 (ENSMLEG00000035890) #11 HOXD3 (ENSMLEG00000037278) #12 HOXD4 (ENSMLEG00000024188) #13 ENSMLEG00000042507 #14 HOXD9 (ENSMLEG00000025695) HOXD10 (ENSMLEG00000044067) #15 ENSMLEG00000030792 #16 HOXD12 (ENSMLEG00000032533) #17 HOXD13 (ENSMLEG00000031532) EVX2 (ENSMLEG00000035528) #18 LNPK (ENSMLEG00000033659) #19 ENSMLEG00000001270 ATP5MC3 (ENSMLEG00000043816) #20 ATF2 (ENSMLEG00000035167) #21 CHN1 (ENSMLEG00000032406) #22 ENSMLEG00000000615 CHRNA1 (ENSMLEG00000043089) #23 WIPF1 (ENSMLEG00000001484) #24 ENSMLEG00000029654 GPR155 (ENSMLEG00000027961) #25 SCRN3 (ENSMLEG00000043626) #26 CIR1 (ENSMLEG00000009014) #27 OLA1 (ENSMLEG00000040175) #29 ENSMLEG00000042096 SP3 (ENSMLEG00000022357) #30 CDCA7 (ENSMLEG00000036199) #31 MAP3K20 (ENSMLEG00000035407) #32 RAPGEF4 (ENSMLEG00000043070) #33 ENSMLEG00000036771 PDK1 (ENSMLEG00000031983) #34 Sooty mangabey MODERN SPECIES 570 HOXD4 (ENSCATG00000041719) #13 HOXD8 (ENSCATG00000032148) #14 HOXD9 (ENSCATG00000037190) HOXD11 (ENSCATG00000031157) #16 HOXD10 (ENSCATG00000032256) #15 HOXD12 (ENSCATG00000032043) #17 HOXD13 (ENSCATG00000031889) EVX2 (ENSCATG00000038250) #18 ENSCATG00000005782 LNPK (ENSCATG00000039052) #19 ENSCATG00000041432 ENSCATG00000037951 ATP5MC3 (ENSCATG00000035329) #20 ATF2 (ENSCATG00000005694) #21 ENSCATG00000035911 CHN1 (ENSCATG00000036640) #22 CHRNA1 (ENSCATG00000030584) #23 WIPF1 (ENSCATG00000022645) #24 GPR155 (ENSCATG00000033300) #25 SCRN3 (ENSCATG00000032178) #26 CIR1 (ENSCATG00000034814) #27 SP9 (ENSCATG00000031475) #28 ENSCATG00000031189 ENSCATG00000038920 #29 SP3 (ENSCATG00000028784) #30 ENSCATG00000036945 CDCA7 (ENSCATG00000035553) #31 MAP3K20 (ENSCATG00000038986) #32 ENSCATG00000036110 RAPGEF4 (ENSCATG00000033510) #33 PDK1 (ENSCATG00000035483) #34 Rhinopithecus ANCESTRAL SPECIES 68 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135.g.a.b #27 ENSGT00730000111135.g.b #27 ENSGT00940000162304 #28 ENSGT00390000000673.b.d #29 ENSGT00940000155099.a #30 ENSGT00940000162422.d ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00910000146880 ENSGT01030000234646.B.a.a.b #34 Black snub-nosed monkey MODERN SPECIES 1870 CHN1 (ENSRBIG00000044556) #22 CHRNA1 (ENSRBIG00000024590) #23 WIPF1 (ENSRBIG00000041160) #24 GPR155 (ENSRBIG00000027170) #25 SCRN3 (ENSRBIG00000032103) #26 ENSRBIG00000043539 #27 SP9 (ENSRBIG00000041465) #28 OLA1 (ENSRBIG00000006151) #29 SP3 (ENSRBIG00000030644) #30 ENSRBIG00000035710 CDCA7 (ENSRBIG00000037944) #31 MAP3K20 (ENSRBIG00000032964) #32 RAPGEF4 (ENSRBIG00000042553) #33 ENSRBIG00000039311 Golden snub-nosed monkey MODERN SPECIES 2872 CHN1 (ENSRROG00000042097) #22 CHRNA1 (ENSRROG00000045787) #23 Laurasiatheria ANCESTRAL SPECIES 12 ENSGT00940000153147.m.a.a.a.b.a.b #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00570000080031 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000175090 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 Eulipotyphla ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.a #22 Common shrew MODERN SPECIES 1973 CHN1 (ENSSARG00000010374) #22 Hedgehog MODERN SPECIES 2653 ENSEEUG00000010428 #22 Laurasiatheria_a ANCESTRAL SPECIES 16 ENSGT00940000153147.m.a.a.a.b.a.b #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00570000080031 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000175090 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 Artiodactyla ANCESTRAL SPECIES 13 ENSGT00940000153147.m.a.a.a.b.a.b #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00960000192081 Suina DUPLICATION Suina ANCESTRAL SPECIES 3 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000010491.kb.a ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a.e #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00940000160029 #37 Pig MODERN SPECIES 6 HOXD1 (ENSSSCG00000015986) #11 HOXD3 (ENSSSCG00000015985) #12 HOXD4 (ENSSSCG00000015984) #13 HOXD8 (ENSSSCG00000040349) #14 HOXD9 (ENSSSCG00000015982) HOXD10 (ENSSSCG00000015981) #15 HOXD11 (ENSSSCG00000034741) #16 HOXD12 (ENSSSCG00000015980) #17 HOXD13 (ENSSSCG00000057890) EVX2 (ENSSSCG00000023146) #18 ENSSSCG00000053760 ENSSSCG00000039002 LNPK (ENSSSCG00000015976) #19 ATP5MC3 (ENSSSCG00000015973) #20 ATF2 (ENSSSCG00000038076) #21 ENSSSCG00000022345 #22 CHRNA1 (ENSSSCG00000015969) #23 ENSSSCG00000027348 GPR155 (ENSSSCG00000015965) #25 SCRN3 (ENSSSCG00000023297) #26 CIR1 (ENSSSCG00000027516) #27 SP9 (ENSSSCG00000036172) #28 ENSSSCG00000044710 OLA1 (ENSSSCG00000015963) #29 SP3 (ENSSSCG00000015962) #30 CDCA7 (ENSSSCG00000015961) #31 MAP3K20 (ENSSSCG00000015960) #32 ENSSSCG00000046252 RAPGEF4 (ENSSSCG00000015959) #33 PDK1 (ENSSSCG00000015958) #34 ITGA6 (ENSSSCG00000015955) #35 Chacoan peccary MODERN SPECIES 88 MTX2 (ENSCWAG00000000848) #10 HOXD1 (ENSCWAG00000000831) #11 HOXD3 (ENSCWAG00000000815) #12 HOXD4 (ENSCWAG00000000799) #13 HOXD8 (ENSCWAG00000000766) #14 HOXD9 (ENSCWAG00000000750) HOXD10 (ENSCWAG00000000737) #15 HOXD11 (ENSCWAG00000000728) #16 HOXD12 (ENSCWAG00000000716) #17 HOXD13 (ENSCWAG00000000704) EVX2 (ENSCWAG00000000686) #18 ENSCWAG00000000677 LNPK (ENSCWAG00000000637) #19 ENSCWAG00000000620 #20 ATF2 (ENSCWAG00000000507) #21 CHN1 (ENSCWAG00000000417) #22 CHRNA1 (ENSCWAG00000000173) #23 WIPF1 (ENSCWAG00000000086) #24 GPR155 (ENSCWAG00000015434) #25 SCRN3 (ENSCWAG00000015324) #26 CIR1 (ENSCWAG00000015285) #27 SP9 (ENSCWAG00000015261) #28 ENSCWAG00000015225 OLA1 (ENSCWAG00000015018) #29 SP3 (ENSCWAG00000014875) #30 CDCA7 (ENSCWAG00000014474) #31 MAP3K20 (ENSCWAG00000014376) #32 RAPGEF4 (ENSCWAG00000011603) #33 PDK1 (ENSCWAG00000011376) #34 ITGA6 (ENSCWAG00000009945) #35 DLX2 (ENSCWAG00000009801) #36 Suina ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.a.f #22 Pig MODERN SPECIES 15 ULK3 (ENSSSCG00000001898) SCAMP2 (ENSSSCG00000001892) MPI (ENSSSCG00000024990) FAM219B (ENSSSCG00000029776) COX5A (ENSSSCG00000024316) RPP25 (ENSSSCG00000001888) SCAMP5 (ENSSSCG00000001887) PPCDC (ENSSSCG00000027478) ENSSSCG00000061937 C15orf39 (ENSSSCG00000001885) ENSSSCG00000041453 COMMD4 (ENSSSCG00000001884) NEIL1 (ENSSSCG00000001882) MAN2C1 (ENSSSCG00000001881) SIN3A (ENSSSCG00000001880) ENSSSCG00000032951 #22 PTPN9 (ENSSSCG00000001878) SNUPN (ENSSSCG00000001877) IMP3 (ENSSSCG00000042572) SNX33 (ENSSSCG00000001875) CSPG4 (ENSSSCG00000001873) ODF3L1 (ENSSSCG00000001879) LINGO1 (ENSSSCG00000001872) HMG20A (ENSSSCG00000001871) PEAK1 (ENSSSCG00000001869) TSPAN3 (ENSSSCG00000001868) PSTPIP1 (ENSSSCG00000001867) RCN2 (ENSSSCG00000001866) ENSSSCG00000048453 SCAPER (ENSSSCG00000001865) ISL2 (ENSSSCG00000033348) Artiodactyla_a ANCESTRAL SPECIES 13 ENSGT00940000153147.m.a.a.a.b.a.b #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00960000192081 Artiodactyla_b ANCESTRAL SPECIES 12 ENSGT00940000153147.m.a.a.a.b.a.b #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00960000192081 Pecora ANCESTRAL SPECIES 24 ENSGT00940000153147.m.a.a.a.b.a.b #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00960000192081 Percora_a ANCESTRAL SPECIES 5 ENSGT00940000153147.m.a.a.a.b.a.b #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00960000192081 Bovidae ANCESTRAL SPECIES 8 ENSGT00940000153147.m.a.a.a.b.a.b #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00960000192081 Caprinae ANCESTRAL SPECIES 5 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01010000228762 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00510000046986.x.b.b.c ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00940000154950.l ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 Rambouillet Sheep MODERN SPECIES 11 MTX2 (ENSOARG00020000188) #10 HOXD1 (ENSOARG00020000237) #11 HOXD3 (ENSOARG00020000257) #12 HOXD4 (ENSOARG00020000275) #13 HOXD8 (ENSOARG00020000297) #14 HOXD9 (ENSOARG00020000321) HOXD10 (ENSOARG00020000330) #15 hoxd11 (ENSOARG00020000346) #16 HOXD12 (ENSOARG00020000357) #17 HOXD13 (ENSOARG00020000373) EVX2 (ENSOARG00020000381) #18 ENSOARG00020000394 LNPK (ENSOARG00020000416) #19 ATP5MC3 (ENSOARG00020000538) #20 ATF2 (ENSOARG00020000583) #21 CHN1 (ENSOARG00020000831) #22 ENSOARG00020001216 ENSOARG00020001229 CHRNA1 (ENSOARG00020001273) #23 ENSOARG00020001367 GPR155 (ENSOARG00020001419) #25 SCRN3 (ENSOARG00020001508) #26 CIR1 (ENSOARG00020001547) #27 SP9 (ENSOARG00020001556) #28 OLA1 (ENSOARG00020001577) #29 ENSOARG00020001636 SP3 (ENSOARG00020001657) #30 CDCA7 (ENSOARG00020001710) #31 ENSOARG00020001769 ENSOARG00020001776 MAP3K20 (ENSOARG00020001796) #32 Goat MODERN SPECIES 11 HOXD3 (ENSCHIG00000011624) #12 HOXD4 (ENSCHIG00000019702) #13 HOXD8 (ENSCHIG00000013371) #14 HOXD9 (ENSCHIG00000023245) HOXD10 (ENSCHIG00000011771) #15 HOXD11 (ENSCHIG00000026087) #16 HOXD12 (ENSCHIG00000014734) #17 HOXD13 (ENSCHIG00000009994) EVX2 (ENSCHIG00000026644) #18 ENSCHIG00000004992 ENSCHIG00000025787 LNPK (ENSCHIG00000012313) #19 ENSCHIG00000018041 #20 ATF2 (ENSCHIG00000011446) #21 ENSCHIG00000012635 CHN1 (ENSCHIG00000017514) #22 CHRNA1 (ENSCHIG00000018272) #23 ENSCHIG00000009043 GPR155 (ENSCHIG00000024827) #25 SCRN3 (ENSCHIG00000010523) #26 CIR1 (ENSCHIG00000023936) #27 SP9 (ENSCHIG00000012561) #28 ENSCHIG00000021711 OLA1 (ENSCHIG00000024019) #29 SP3 (ENSCHIG00000024420) #30 CDCA7 (ENSCHIG00000026797) #31 MAP3K20 (ENSCHIG00000015916) #32 RAPGEF4 (ENSCHIG00000014546) #33 ENSCHIG00000005492 PDK1 (ENSCHIG00000012161) #34 ITGA6 (ENSCHIG00000013031) #35 Bovinae ANCESTRAL SPECIES 5 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000153299.c.a.b.u.a ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00960000192081 Bos ANCESTRAL SPECIES 6 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000153299.c.a.b.u.a ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b.`c #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00960000192081 ENSGT00940000160029 #37 Bos_b ANCESTRAL SPECIES 3 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT01030000234916.g.b ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00940000166167.b ENSGT00390000000673.b.`c #29 ENSGT01100000263480.a.b.b.a.b.b.a.a.a.b.b.a.b.b.a.a.a ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 Cow MODERN SPECIES 11 HOXD3 (ENSBTAG00000004835) #12 HOXD4 (ENSBTAG00000039581) #13 HOXD8 (ENSBTAG00000049845) #14 HOXD9 (ENSBTAG00000016033) HOXD10 (ENSBTAG00000016030) #15 HOXD11 (ENSBTAG00000033330) #16 HOXD12 (ENSBTAG00000004314) #17 HOXD13 (ENSBTAG00000004313) EVX2 (ENSBTAG00000049537) #18 ENSBTAG00000002009 ENSBTAG00000050237 LNPK (ENSBTAG00000018061) #19 ENSBTAG00000031711 ATP5MC3 (ENSBTAG00000002944) #20 ATF2 (ENSBTAG00000002295) #21 CHN1 (ENSBTAG00000008028) #22 CHRNA1 (ENSBTAG00000018253) #23 WIPF1 (ENSBTAG00000001585) GPR155 (ENSBTAG00000021636) #25 SCRN3 (ENSBTAG00000012966) #26 CIR1 (ENSBTAG00000038620) #27 SP9 (ENSBTAG00000014949) #28 ENSBTAG00000052569 OLA1 (ENSBTAG00000006970) #29 ENSBTAG00000053359 SP3 (ENSBTAG00000000176) #30 ENSBTAG00000050579 CDCA7 (ENSBTAG00000003458) #31 MAP3K20 (ENSBTAG00000001083) #32 RAPGEF4 (ENSBTAG00000020984) #33 PDK1 (ENSBTAG00000016836) #34 Hybrid Bos Indicus MODERN SPECIES 11 HOXD1 (ENSBIXG00005030413) #11 HOXD3 (ENSBIXG00005030419) #12 HOXD8 (ENSBIXG00005030431) #14 HOXD9 (ENSBIXG00005030437) HOXD10 (ENSBIXG00005005289) #15 HOXD11 (ENSBIXG00005001515) #16 HOXD12 (ENSBIXG00005001517) #17 HOXD13 (ENSBIXG00005001519) EVX2 (ENSBIXG00005005288) #18 ENSBIXG00005029246 ENSBIXG00005029245 LNPK (ENSBIXG00005005282) #19 ENSBIXG00005029239 ATP5MC3 (ENSBIXG00005029222) #20 ATF2 (ENSBIXG00005001719) #21 CHN1 (ENSBIXG00005001962) #22 CHRNA1 (ENSBIXG00005028981) #23 ENSBIXG00005002196 GPR155 (ENSBIXG00005028873) #25 SCRN3 (ENSBIXG00005028812) #26 CIR1 (ENSBIXG00005005349) #27 SP9 (ENSBIXG00005002344) #28 ENSBIXG00005004969 OLA1 (ENSBIXG00005028684) #29 ENSBIXG00005004930 SP3 (ENSBIXG00005005344) #30 ENSBIXG00005028515 CDCA7 (ENSBIXG00005028490) #31 MAP3K20 (ENSBIXG00005028315) #32 RAPGEF4 (ENSBIXG00005028149) #33 PDK1 (ENSBIXG00005006953) #34 Bos_a ANCESTRAL SPECIES 4 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000153299.c.a.b.u.a ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b.`c #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00960000192081 ENSGT00940000160029 #37 Domestic yak MODERN SPECIES 11 MTX2 (ENSBGRG00000017363) #10 HOXD1 (ENSBGRG00000017303) #11 HOXD3 (ENSBGRG00000017255) #12 ENSBGRG00000017167 #13 HOXD8 (ENSBGRG00000017045) #14 HOXD9 (ENSBGRG00000017014) HOXD10 (ENSBGRG00000016979) #15 HOXD11 (ENSBGRG00000016923) #16 HOXD12 (ENSBGRG00000016890) #17 HOXD13 (ENSBGRG00000016836) EVX2 (ENSBGRG00000016780) #18 LNPK (ENSBGRG00000016182) #19 ENSBGRG00000016132 ATP5MC3 (ENSBGRG00000016024) #20 ATF2 (ENSBGRG00000015648) #21 CHN1 (ENSBGRG00000015101) #22 CHRNA1 (ENSBGRG00000014839) #23 ENSBGRG00000014699 ENSBGRG00000014674 GPR155 (ENSBGRG00000014360) #25 SCRN3 (ENSBGRG00000014271) #26 CIR1 (ENSBGRG00000014162) #27 SP9 (ENSBGRG00000014139) #28 ENSBGRG00000013728 #29 ENSBGRG00000013676 SP3 (ENSBGRG00000013570) #30 ENSBGRG00000013535 ENSBGRG00000013492 CDCA7 (ENSBGRG00000013198) #31 MAP3K20 (ENSBGRG00000013013) #32 RAPGEF4 (ENSBGRG00000012108) #33 Wild yak MODERN SPECIES 1426 ATP5MC3 (ENSBMUG00000024987) #20 ATF2 (ENSBMUG00000024967) #21 CHN1 (ENSBMUG00000024898) #22 CHRNA1 (ENSBMUG00000024869) #23 American bison MODERN SPECIES 3320 ENSBBBG00000004376 HOXD1 (ENSBBBG00000017690) #11 HOXD3 (ENSBBBG00000017682) #12 HOXD4 (ENSBBBG00000017669) #13 HOXD8 (ENSBBBG00000017657) #14 HOXD9 (ENSBBBG00000017650) HOXD10 (ENSBBBG00000006962) #15 HOXD12 (ENSBBBG00000017645) #17 HOXD13 (ENSBBBG00000017641) ENSBBBG00000017638 ENSBBBG00000017634 LNPK (ENSBBBG00000017627) #19 ENSBBBG00000017593 ATP5MC3 (ENSBBBG00000017586) #20 ATF2 (ENSBBBG00000017564) #21 CHN1 (ENSBBBG00000004302) #22 CHRNA1 (ENSBBBG00000017301) #23 WIPF1 (ENSBBBG00000017196) #24 GPR155 (ENSBBBG00000017134) #25 SCRN3 (ENSBBBG00000017011) #26 CIR1 (ENSBBBG00000016992) #27 SP9 (ENSBBBG00000016959) #28 ENSBBBG00000004193 #29 SP3 (ENSBBBG00000016877) #30 Siberian musk deer MODERN SPECIES 343 ENSMMSG00000008131 CHN1 (ENSMMSG00000008149) #22 CHRNA1 (ENSMMSG00000008178) #23 ENSMMSG00000008236 WIPF1 (ENSMMSG00000008255) #24 GPR155 (ENSMMSG00000008338) #25 SCRN3 (ENSMMSG00000008414) #26 CIR1 (ENSMMSG00000008433) #27 SP9 (ENSMMSG00000008454) #28 ENSMMSG00000008479 #29 SP3 (ENSMMSG00000008721) #30 CDCA7 (ENSMMSG00000008759) #31 MAP3K20 (ENSMMSG00000008924) #32 RAPGEF4 (ENSMMSG00000009106) #33 PDK1 (ENSMMSG00000010486) #34 ITGA6 (ENSMMSG00000010565) #35 DLX2 (ENSMMSG00000010774) #36 Yarkand deer MODERN SPECIES 26 MTX2 (ENSCHYG00000015392) #10 HOXD1 (ENSCHYG00000015562) #11 HOXD3 (ENSCHYG00000015650) #12 HOXD4 (ENSCHYG00000015683) #13 HOXD8 (ENSCHYG00000015741) #14 HOXD9 (ENSCHYG00000015808) HOXD10 (ENSCHYG00000015831) #15 ENSCHYG00000015846 HOXD12 (ENSCHYG00000015954) #17 HOXD13 (ENSCHYG00000015985) LNPK (ENSCHYG00000016125) #19 ENSCHYG00000016391 ENSCHYG00000016417 ATP5MC3 (ENSCHYG00000016464) #20 ATF2 (ENSCHYG00000016575) #21 CHN1 (ENSCHYG00000017015) #22 ENSCHYG00000017575 CHRNA1 (ENSCHYG00000017619) #23 ENSCHYG00000017877 GPR155 (ENSCHYG00000018083) #25 ENSCHYG00000018263 #26 CIR1 (ENSCHYG00000018323) #27 SP9 (ENSCHYG00000018463) #28 ENSCHYG00000018536 #29 SP3 (ENSCHYG00000019030) #30 ENSCHYG00000019193 #31 MAP3K20 (ENSCHYG00000019464) #32 RAPGEF4 (ENSCHYG00000019936) #33 PDK1 (ENSCHYG00000020641) #34 ITGA6 (ENSCHYG00000020793) #35 DLX2 (ENSCHYG00000021329) #36 Cetacea ANCESTRAL SPECIES 14 ENSGT00940000153147.m.a.a.a.b.a.a.hb.a ##9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00940000171387 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135.j #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436.e #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00960000192081 Odontoceti ANCESTRAL SPECIES 13 ENSGT00940000153147.m.a.a.a.b.a.a.hb.a ##9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00390000004755.tb.a.a ENSGT00940000171387 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135.j #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436.e #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 Odontoceti_a ANCESTRAL SPECIES 10 ENSGT00940000153147.m.a.a.a.b.a.a.hb.a ##9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00390000004755.tb.a.a ENSGT00940000171387 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135.j #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436.e #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 Odontoceti_b ANCESTRAL SPECIES 12 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00390000008142.t ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00390000004755.tb.a.a ENSGT00940000171387 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135.j #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000154733.b.d ENSGT00940000155436.e #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 Monodontidae ANCESTRAL SPECIES 10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00950000182834.A.a.a.t ENSGT00390000008142.t ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00390000004755.tb.a.a ENSGT00940000171387 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135.j #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000154733.b.d ENSGT00940000155436.e #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 Beluga whale MODERN SPECIES 84 HOXD1 (ENSDLEG00000009181) #11 HOXD3 (ENSDLEG00000009171) #12 HOXD4 (ENSDLEG00000009166) #13 HOXD8 (ENSDLEG00000009104) #14 HOXD9 (ENSDLEG00000009091) HOXD10 (ENSDLEG00000009076) #15 ENSDLEG00000009052 #16 HOXD12 (ENSDLEG00000009038) #17 HOXD13 (ENSDLEG00000009014) EVX2 (ENSDLEG00000008943) #18 LNPK (ENSDLEG00000008885) #19 ENSDLEG00000008854 ENSDLEG00000008837 ATP5G3 (ENSDLEG00000008800) #20 ATF2 (ENSDLEG00000008726) #21 CHN1 (ENSDLEG00000008654) #22 CHRNA1 (ENSDLEG00000008433) #23 ENSDLEG00000008360 WIPF1 (ENSDLEG00000008289) GPR155 (ENSDLEG00000008209) #25 SCRN3 (ENSDLEG00000008164) #26 CIR1 (ENSDLEG00000008125) #27 SP9 (ENSDLEG00000008102) #28 OLA1 (ENSDLEG00000018856) #29 SP3 (ENSDLEG00000018847) #30 CDCA7 (ENSDLEG00000018739) #31 MAP3K20 (ENSDLEG00000018716) #32 RAPGEF4 (ENSDLEG00000018653) #33 PDK1 (ENSDLEG00000018634) #34 ITGA6 (ENSDLEG00000018571) #35 DLX2 (ENSDLEG00000018558) #36 Narwhal MODERN SPECIES 302 HOXD1 (ENSMMNG00015007440) #11 HOXD3 (ENSMMNG00015007460) #12 HOXD4 (ENSMMNG00015007477) #13 HOXD8 (ENSMMNG00015007526) #14 HOXD9 (ENSMMNG00015007556) HOXD10 (ENSMMNG00015007571) #15 ENSMMNG00015007589 #16 HOXD12 (ENSMMNG00015007598) #17 HOXD13 (ENSMMNG00015007609) EVX2 (ENSMMNG00015007622) #18 LNPK (ENSMMNG00015007647) #19 ENSMMNG00015007684 ENSMMNG00015007699 ATP5MC3 (ENSMMNG00015007729) #20 ATF2 (ENSMMNG00015007777) #21 CHN1 (ENSMMNG00015007913) #22 CHRNA1 (ENSMMNG00015008057) #23 ENSMMNG00015008133 ENSMMNG00015008159 GPR155 (ENSMMNG00015008223) #25 SCRN3 (ENSMMNG00015008267) #26 CIR1 (ENSMMNG00015008295) #27 SP9 (ENSMMNG00015008313) #28 OLA1 (ENSMMNG00015008339) #29 SP3 (ENSMMNG00015008383) #30 ENSMMNG00015008402 CDCA7 (ENSMMNG00015008456) #31 MAP3K20 (ENSMMNG00015008529) #32 ENSMMNG00015008551 RAPGEF4 (ENSMMNG00015008722) #33 PDK1 (ENSMMNG00015008933) #34 Vaquita MODERN SPECIES 18 HOXD1 (ENSPSNG00000005524) #11 HOXD3 (ENSPSNG00000005539) #12 HOXD4 (ENSPSNG00000005556) #13 HOXD8 (ENSPSNG00000005602) #14 HOXD9 (ENSPSNG00000005639) HOXD10 (ENSPSNG00000005654) #15 HOXD11 (ENSPSNG00000005666) #16 HOXD12 (ENSPSNG00000005695) #17 HOXD13 (ENSPSNG00000005715) EVX2 (ENSPSNG00000005734) #18 LNPK (ENSPSNG00000005786) #19 ENSPSNG00000005846 ENSPSNG00000005869 ATP5MC3 (ENSPSNG00000006024) #20 ATF2 (ENSPSNG00000006111) #21 CHN1 (ENSPSNG00000006315) #22 CHRNA1 (ENSPSNG00000006481) #23 ENSPSNG00000006539 ENSPSNG00000006580 #25 SCRN3 (ENSPSNG00000006611) #26 CIR1 (ENSPSNG00000006675) #27 SP9 (ENSPSNG00000006701) #28 OLA1 (ENSPSNG00000006756) #29 SP3 (ENSPSNG00000006849) #30 ENSPSNG00000006879 CDCA7 (ENSPSNG00000007031) #31 MAP3K20 (ENSPSNG00000007117) #32 RAPGEF4 (ENSPSNG00000007440) #33 PDK1 (ENSPSNG00000008677) #34 ITGA6 (ENSPSNG00000008772) #35 DLX2 (ENSPSNG00000008884) #36 Dolphin MODERN SPECIES 589 ATF2 (ENSTTRG00000000408) #21 CHN1 (ENSTTRG00000000406) #22 CHRNA1 (ENSTTRG00000000405) #23 Sperm whale MODERN SPECIES 11 ENSPCTG00005003466 ##9 MTX2 (ENSPCTG00005007528) #10 HOXD1 (ENSPCTG00005007516) #11 HOXD3 (ENSPCTG00005007508) #12 HOXD4 (ENSPCTG00005007493) #13 HOXD8 (ENSPCTG00005007418) #14 HOXD9 (ENSPCTG00005007399) HOXD10 (ENSPCTG00005007393) #15 ENSPCTG00005007381 #16 HOXD12 (ENSPCTG00005007367) #17 HOXD13 (ENSPCTG00005007354) EVX2 (ENSPCTG00005007330) #18 LNPK (ENSPCTG00005007293) #19 ATP5MC3 (ENSPCTG00005007202) #20 ATF2 (ENSPCTG00005007004) #21 CHN1 (ENSPCTG00005006263) #22 CHRNA1 (ENSPCTG00005005965) #23 ENSPCTG00005005929 WIPF1 (ENSPCTG00005005895) GPR155 (ENSPCTG00005005831) #25 SCRN3 (ENSPCTG00005005779) #26 CIR1 (ENSPCTG00005005746) #27 SP9 (ENSPCTG00005005728) #28 OLA1 (ENSPCTG00005005654) #29 ENSPCTG00005005615 SP3 (ENSPCTG00005005593) #30 ENSPCTG00005005461 #31 MAP3K20 (ENSPCTG00005005354) #32 RAPGEF4 (ENSPCTG00005004714) #33 PDK1 (ENSPCTG00005004583) #34 ITGA6 (ENSPCTG00005004439) #35 Blue whale MODERN SPECIES 18 ENSBMSG00010006149 ##9 MTX2 (ENSBMSG00010006100) #10 HOXD1 (ENSBMSG00010006055) #11 HOXD3 (ENSBMSG00010006046) #12 HOXD4 (ENSBMSG00010006036) #13 HOXD8 (ENSBMSG00010006022) #14 HOXD9 (ENSBMSG00010006014) HOXD10 (ENSBMSG00010006002) #15 HOXD11 (ENSBMSG00010005993) #16 HOXD12 (ENSBMSG00010005987) #17 HOXD13 (ENSBMSG00010005980) EVX2 (ENSBMSG00010005974) #18 LNPK (ENSBMSG00010005955) #19 ATP5MC3 (ENSBMSG00010005937) #20 ATF2 (ENSBMSG00010005883) #21 CHN1 (ENSBMSG00010005726) #22 CHRNA1 (ENSBMSG00010005615) #23 ENSBMSG00010005581 ENSBMSG00010005563 GPR155 (ENSBMSG00010005540) #25 SCRN3 (ENSBMSG00010005522) #26 CIR1 (ENSBMSG00010005507) #27 SP9 (ENSBMSG00010005500) #28 OLA1 (ENSBMSG00010005447) #29 SP3 (ENSBMSG00010021145) #30 ENSBMSG00010021109 #31 MAP3K20 (ENSBMSG00010021088) #32 RAPGEF4 (ENSBMSG00010020617) #33 PDK1 (ENSBMSG00010020497) #34 ITGA6 (ENSBMSG00010020312) #35 DLX2 (ENSBMSG00010020236) #36 Camelidae ANCESTRAL SPECIES 16 ENSGT00950000182892.a.a.b #8 ENSGT00940000153147.m.a.a.a.b.a.b #9 ENSGT00950000182919.C #10 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00940000160029 #37 Alpaca MODERN SPECIES 3695 LNPK (ENSVPAG00000002679) #19 ATP5MC3 (ENSVPAG00000002678) #20 ATF2 (ENSVPAG00000002676) #21 CHN1 (ENSVPAG00000002675) #22 CHRNA1 (ENSVPAG00000002672) #23 WIPF1 (ENSVPAG00000002670) #24 Arabian camel MODERN SPECIES 31 NFE2L2 (ENSCDRG00005002588) #8 HNRNPA3 (ENSCDRG00005002567) #9 MTX2 (ENSCDRG00005002532) #10 HOXD3 (ENSCDRG00005002512) #12 HOXD4 (ENSCDRG00005002497) #13 HOXD8 (ENSCDRG00005002477) #14 HOXD9 (ENSCDRG00005002467) HOXD10 (ENSCDRG00005002456) #15 HOXD11 (ENSCDRG00005002440) #16 HOXD12 (ENSCDRG00005002432) #17 HOXD13 (ENSCDRG00005002411) EVX2 (ENSCDRG00005002358) #18 LNPK (ENSCDRG00005002325) #19 ATP5MC3 (ENSCDRG00005002307) #20 ATF2 (ENSCDRG00005002159) #21 CHN1 (ENSCDRG00005002091) #22 CHRNA1 (ENSCDRG00005001973) #23 ENSCDRG00005001936 #24 GPR155 (ENSCDRG00005001897) #25 SCRN3 (ENSCDRG00005001860) #26 CIR1 (ENSCDRG00005001834) #27 SP9 (ENSCDRG00005001817) #28 ENSCDRG00005001752 #29 SP3 (ENSCDRG00005001722) #30 CDCA7 (ENSCDRG00005001429) #31 MAP3K20 (ENSCDRG00005001310) #32 RAPGEF4 (ENSCDRG00005001089) #33 PDK1 (ENSCDRG00005000974) #34 ITGA6 (ENSCDRG00005000778) #35 DLX2 (ENSCDRG00005000738) #36 DLX1 (ENSCDRG00005000721) #37 Laurasiatheria_b ANCESTRAL SPECIES 16 ENSGT00940000153147.m.a.a.a.b.a.b #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00570000080031 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000175090 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 Carnivora ANCESTRAL SPECIES 17 ENSGT00940000153147.m.a.a.a.b.a.b #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00910000147479.a.b ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00570000080031 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000175090 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 Felidae ANCESTRAL SPECIES 15 ENSGT00940000153147.m.a.a.a.b.a.b #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00910000147479.a.b ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b.mb.a #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 Panthera ANCESTRAL SPECIES 9 ENSGT00940000153147.m.a.a.a.b.a.b #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00910000147479.a.b ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b.mb.a #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 Tiger MODERN SPECIES 43 NFE2L2 (ENSPTIG00000007874) #8 HNRNPA3 (ENSPTIG00000008598) #9 MTX2 (ENSPTIG00000011503) #10 ENSPTIG00000013485 HOXD4 (ENSPTIG00000015199) #13 ENSPTIG00000015581 #14 ENSPTIG00000006835 HOXD10 (ENSPTIG00000015771) #15 HOXD13 (ENSPTIG00000016212) LNPK (ENSPTIG00000016532) #19 ATP5MC3 (ENSPTIG00000016881) #20 ATF2 (ENSPTIG00000017517) #21 CHN1 (ENSPTIG00000006887) #22 CHRNA1 (ENSPTIG00000012090) #23 WIPF1 (ENSPTIG00000016801) #24 GPR155 (ENSPTIG00000018965) #25 SCRN3 (ENSPTIG00000003437) #26 CIR1 (ENSPTIG00000008708) #27 ENSPTIG00000009967 ENSPTIG00000011872 #29 SP3 (ENSPTIG00000014294) #30 CDCA7 (ENSPTIG00000016039) #31 ENSPTIG00000019347 RAPGEF4 (ENSPTIG00000021652) #33 PDK1 (ENSPTIG00000017044) #34 ITGA6 (ENSPTIG00000019962) #35 ENSPTIG00000017154 #37 METAP1D (ENSPTIG00000017545) Panthera_a ANCESTRAL SPECIES 6 ENSGT00940000153147.m.a.a.a.b.a.b #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00910000147479.a.b ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b.mb.a #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 lion MODERN SPECIES 8 ENSPLOG00000022134 #9 MTX2 (ENSPLOG00000022148) #10 HOXD1 (ENSPLOG00000022171) #11 HOXD3 (ENSPLOG00000022176) #12 HOXD4 (ENSPLOG00000022180) #13 HOXD8 (ENSPLOG00000022192) #14 HOXD9 (ENSPLOG00000022195) HOXD10 (ENSPLOG00000022198) #15 HOXD11 (ENSPLOG00000022202) #16 HOXD12 (ENSPLOG00000022207) #17 HOXD13 (ENSPLOG00000022213) EVX2 (ENSPLOG00000022219) #18 LNPK (ENSPLOG00000022229) #19 ATP5MC3 (ENSPLOG00000022249) #20 ATF2 (ENSPLOG00000022276) #21 CHN1 (ENSPLOG00000022311) #22 CHRNA1 (ENSPLOG00000022353) #23 WIPF1 (ENSPLOG00000022385) #24 ENSPLOG00000022399 ENSPLOG00000022404 GPR155 (ENSPLOG00000022420) #25 SCRN3 (ENSPLOG00000022426) #26 CIR1 (ENSPLOG00000022436) #27 ENSPLOG00000022440 SP9 (ENSPLOG00000022443) #28 ENSPLOG00000022450 #29 SP3 (ENSPLOG00000022461) #30 CDCA7 (ENSPLOG00000022466) #31 ENSPLOG00000022477 RAPGEF4 (ENSPLOG00000022513) #33 PDK1 (ENSPLOG00000022560) #34 leopard MODERN SPECIES 1 ENSPPRG00000022322 #9 MTX2 (ENSPPRG00000022475) #10 HOXD1 (ENSPPRG00000023009) #11 HOXD3 (ENSPPRG00000022847) #12 HOXD4 (ENSPPRG00000022845) #13 HOXD8 (ENSPPRG00000022672) #14 HOXD9 (ENSPPRG00000000084) HOXD10 (ENSPPRG00000000139) #15 HOXD11 (ENSPPRG00000000168) #16 HOXD12 (ENSPPRG00000000300) #17 HOXD13 (ENSPPRG00000000349) EVX2 (ENSPPRG00000000389) #18 LNPK (ENSPPRG00000000436) #19 ATP5MC3 (ENSPPRG00000000490) #20 ATF2 (ENSPPRG00000001271) #21 CHN1 (ENSPPRG00000001854) #22 CHRNA1 (ENSPPRG00000002357) #23 WIPF1 (ENSPPRG00000002779) #24 ENSPPRG00000002818 GPR155 (ENSPPRG00000003324) #25 SCRN3 (ENSPPRG00000003477) #26 CIR1 (ENSPPRG00000003553) #27 SP9 (ENSPPRG00000003658) #28 ENSPPRG00000004233 #29 ENSPPRG00000004311 SP3 (ENSPPRG00000004464) #30 CDCA7 (ENSPPRG00000005021) #31 MAP3K20 (ENSPPRG00000005621) #32 RAPGEF4 (ENSPPRG00000006832) #33 PDK1 (ENSPPRG00000007221) #34 ITGA6 (ENSPPRG00000008496) #35 Cat MODERN SPECIES 239 HNRNPA3 (ENSFCAG00000012146) #9 MTX2 (ENSFCAG00000030099) #10 HOXD1 (ENSFCAG00000042171) #11 HOXD3 (ENSFCAG00000022371) #12 HOXD4 (ENSFCAG00000045772) #13 HOXD8 (ENSFCAG00000034788) #14 HOXD9 (ENSFCAG00000035038) HOXD10 (ENSFCAG00000006264) #15 HOXD11 (ENSFCAG00000030594) #16 HOXD12 (ENSFCAG00000044671) #17 HOXD13 (ENSFCAG00000030694) EVX2 (ENSFCAG00000023892) #18 LNPK (ENSFCAG00000033171) #19 ATP5MC3 (ENSFCAG00000012719) #20 ATF2 (ENSFCAG00000027595) #21 CHN1 (ENSFCAG00000039893) #22 CHRNA1 (ENSFCAG00000014103) #23 WIPF1 (ENSFCAG00000014400) #24 ENSFCAG00000034843 GPR155 (ENSFCAG00000000439) #25 SCRN3 (ENSFCAG00000022042) #26 CIR1 (ENSFCAG00000022845) #27 SP9 (ENSFCAG00000044908) #28 ENSFCAG00000036661 #29 SP3 (ENSFCAG00000030033) #30 CDCA7 (ENSFCAG00000005476) #31 ENSFCAG00000008059 RAPGEF4 (ENSFCAG00000008057) #33 PDK1 (ENSFCAG00000031620) #34 ITGA6 (ENSFCAG00000000430) #35 DLX2 (ENSFCAG00000038170) #36 Caniformia ANCESTRAL SPECIES 14 ENSGT00940000153147.m.a.a.a.b.a.b #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00910000147479.a.b ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00570000080031 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000175090 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 Canidae DUPLICATION Canidae DUPLICATION Canidae ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.a.g.a #22 Canis_lupus ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.a.g.a #22 Dingo MODERN SPECIES 347 RNF128 (ENSCAFG00020006883) RADX (ENSCAFG00020006912) ENSCAFG00020006937 ENSCAFG00020006940 ENSCAFG00020006941 PWWP3B (ENSCAFG00020006943) ENSCAFG00020006950 SERPINA7 (ENSCAFG00020006955) ENSCAFG00020006962 ENSCAFG00020006969 ENSCAFG00020006976 ENSCAFG00020006980 ENSCAFG00020006982 FAM199X (ENSCAFG00020006986) ENSCAFG00020006988 ENSCAFG00020006993 #22 ENSCAFG00020006998 SLC25A53 (ENSCAFG00020007000) RAB9B (ENSCAFG00020007003) PLP1 (ENSCAFG00020007005) ENSCAFG00020007048 TMEM31 (ENSCAFG00020007068) MORF4L2 (ENSCAFG00020007074) TCEAL1 (ENSCAFG00020007078) ENSCAFG00020007084 ENSCAFG00020007092 ENSCAFG00020007117 BEX3 (ENSCAFG00020007120) TCEAL7 (ENSCAFG00020007121) ENSCAFG00020007123 ENSCAFG00020007128 Canidae ANCESTRAL SPECIES 45 ENSGT00940000153147.m.a.a.a.b.a.b #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a.i #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a.g.b #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00910000147479.a.b.b ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000175090 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 Red fox DUPLICATION Red fox MODERN SPECIES 15 NFE2L2 (ENSVVUG00000012641) #8 ENSVVUG00000012651 ##9 ENSVVUG00000012682 #10 ENSVVUG00000012694 HOXD3 (ENSVVUG00000012700) #12 HOXD8 (ENSVVUG00000012714) #14 ENSVVUG00000012717 HOXD10 (ENSVVUG00000012722) #15 ENSVVUG00000012726 #16 HOXD12 (ENSVVUG00000012731) #17 HOXD13 (ENSVVUG00000012734) EVX2 (ENSVVUG00000012735) #18 LNPK (ENSVVUG00000012737) #19 ATP5MC3 (ENSVVUG00000012759) #20 ATF2 (ENSVVUG00000012774) #21 CHN1 (ENSVVUG00000012819) #22 CHRNA1 (ENSVVUG00000012830) #23 WIPF1 (ENSVVUG00000012885) #24 ENSVVUG00000012900 GPR155 (ENSVVUG00000012912) #25 SCRN3 (ENSVVUG00000012946) #26 CIR1 (ENSVVUG00000012957) #27 SP9 (ENSVVUG00000012965) #28 ENSVVUG00000012991 #29 SP3 (ENSVVUG00000013719) #30 ENSVVUG00000013736 CDCA7 (ENSVVUG00000013756) #31 ENSVVUG00000013763 MAP3K20 (ENSVVUG00000013771) RAPGEF4 (ENSVVUG00000013779) #33 PDK1 (ENSVVUG00000013800) #34 Red fox MODERN SPECIES 308 ESX1 (ENSVVUG00000004243) FAM199X (ENSVVUG00000004255) ENSVVUG00000004266 #22 ENSVVUG00000004271 ENSVVUG00000004283 ENSVVUG00000004288 ENSVVUG00000004295 SLC25A53 (ENSVVUG00000004298) Canis_lupus ANCESTRAL SPECIES 39 ENSGT00940000153147.m.a.a.a.b.a.b #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a.i #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a.g.b #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00910000147479.a.b.b ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000175090 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 Dingo DUPLICATION Dingo MODERN SPECIES 339 HOXD1 (ENSCAFG00020006270) #11 HOXD3 (ENSCAFG00020006263) #12 HOXD4 (ENSCAFG00020006256) #13 HOXD8 (ENSCAFG00020006244) #14 HOXD10 (ENSCAFG00020006239) #15 HOXD11 (ENSCAFG00020006229) #16 HOXD9 (ENSCAFG00020006227) HOXD12 (ENSCAFG00020006216) #17 HOXD13 (ENSCAFG00020006212) EVX2 (ENSCAFG00020006206) #18 LNPK (ENSCAFG00020006192) #19 ENSCAFG00020006176 ENSCAFG00020006151 #20 ATF2 (ENSCAFG00020006131) #21 ENSCAFG00020006118 #22 ENSCAFG00020006110 #22 CHRNA1 (ENSCAFG00020006081) #23 ENSCAFG00020006077 #24 WIPF1 (ENSCAFG00020006074) #24 ENSCAFG00020006068 GPR155 (ENSCAFG00020005897) #25 SCRN3 (ENSCAFG00020005876) #26 CIR1 (ENSCAFG00020005869) #27 SP9 (ENSCAFG00020005867) #28 OLA1 (ENSCAFG00020005038) #29 SP3 (ENSCAFG00020004982) #30 CDCA7 (ENSCAFG00020004971) #31 ENSCAFG00020004969 ENSCAFG00020004961 RAPGEF4 (ENSCAFG00020004415) #33 PDK1 (ENSCAFG00020004348) #34 Dingo MODERN SPECIES 339 MTX2 (ENSCAFG00020006273) #10 HOXD1 (ENSCAFG00020006270) #11 HOXD3 (ENSCAFG00020006263) #12 HOXD4 (ENSCAFG00020006256) #13 HOXD8 (ENSCAFG00020006244) #14 HOXD10 (ENSCAFG00020006239) #15 HOXD11 (ENSCAFG00020006229) #16 HOXD9 (ENSCAFG00020006227) HOXD12 (ENSCAFG00020006216) #17 HOXD13 (ENSCAFG00020006212) EVX2 (ENSCAFG00020006206) #18 LNPK (ENSCAFG00020006192) #19 ENSCAFG00020006176 ENSCAFG00020006151 #20 ATF2 (ENSCAFG00020006131) #21 ENSCAFG00020006118 #22 ENSCAFG00020006110 #22 CHRNA1 (ENSCAFG00020006081) #23 ENSCAFG00020006077 #24 WIPF1 (ENSCAFG00020006074) #24 ENSCAFG00020006068 GPR155 (ENSCAFG00020005897) #25 SCRN3 (ENSCAFG00020005876) #26 CIR1 (ENSCAFG00020005869) #27 SP9 (ENSCAFG00020005867) #28 OLA1 (ENSCAFG00020005038) #29 SP3 (ENSCAFG00020004982) #30 CDCA7 (ENSCAFG00020004971) #31 ENSCAFG00020004969 ENSCAFG00020004961 RAPGEF4 (ENSCAFG00020004415) #33 Dog MODERN SPECIES 29 HNRNPA3 (ENSCAFG00845019864) #9 MTX2 (ENSCAFG00845019381) #10 HOXD1 (ENSCAFG00845019313) #11 HOXD3 (ENSCAFG00845019275) #12 HOXD4 (ENSCAFG00845019072) #13 HOXD10 (ENSCAFG00845019028) #15 HOXD9 (ENSCAFG00845018856) ENSCAFG00845018802 #16 HOXD12 (ENSCAFG00845018775) #17 HOXD13 (ENSCAFG00845018741) EVX2 (ENSCAFG00845018704) #18 LNPK (ENSCAFG00845018510) #19 ENSCAFG00845018368 ATP5MC3 (ENSCAFG00845018248) #20 ATF2 (ENSCAFG00845017708) #21 CHN1 (ENSCAFG00845017147) #22 CHRNA1 (ENSCAFG00845016336) #23 WIPF1 (ENSCAFG00845016036) #24 ENSCAFG00845015883 GPR155 (ENSCAFG00845015821) #25 SCRN3 (ENSCAFG00845015754) #26 CIR1 (ENSCAFG00845015697) #27 SP9 (ENSCAFG00845029658) #28 OLA1 (ENSCAFG00845029594) #29 SP3 (ENSCAFG00845029530) #30 ENSCAFG00845029341 #31 MAP3K20 (ENSCAFG00845029200) #32 RAPGEF4 (ENSCAFG00845028929) #33 PDK1 (ENSCAFG00845028798) #34 ITGA6 (ENSCAFG00845028626) #35 ENSCAFG00845028527 #36 Canidae ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.a.h #22 Canis_lupus ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.a.h #22 Dog MODERN SPECIES 144 CLDN2 (ENSCAFG00845017181) ENSCAFG00845017120 TBC1D8B (ENSCAFG00845016942) RNF128 (ENSCAFG00845016725) RADX (ENSCAFG00845016635) ENSCAFG00845016546 PWWP3B (ENSCAFG00845016500) ENSCAFG00845016460 SERPINA7 (ENSCAFG00845016407) NRK (ENSCAFG00845016215) IL1RAPL2 (ENSCAFG00845016119) ENSCAFG00845016080 ESX1 (ENSCAFG00845015935) FAM199X (ENSCAFG00845015897) ENSCAFG00845024263 ENSCAFG00845024204 #22 ENSCAFG00845024140 SLC25A53 (ENSCAFG00845024107) ENSCAFG00845024075 ENSCAFG00845023955 RAB9B (ENSCAFG00845023869) PLP1 (ENSCAFG00845023800) TMEM31 (ENSCAFG00845023755) GLRA4 (ENSCAFG00845023613) MORF4L2 (ENSCAFG00845023564) TCEAL1 (ENSCAFG00845023525) ENSCAFG00845023485 ENSCAFG00845023442 ENSCAFG00845023312 ENSCAFG00845023198 TCEAL8 (ENSCAFG00845023168) Caniformia_b ANCESTRAL SPECIES 13 ENSGT00940000153147.m.a.a.a.b.a.b #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00910000147479.a.b ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00570000080031 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 Mustelinae ANCESTRAL SPECIES 21 ENSGT00940000153147.m.a.a.a.b.a.b #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00570000080031 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 American mink MODERN SPECIES 106 ENSNVIG00000009098 ENSNVIG00000009049 #20 ENSNVIG00000009030 ATF2 (ENSNVIG00000008881) #21 ENSNVIG00000008866 CHN1 (ENSNVIG00000008762) #22 CHRNA1 (ENSNVIG00000008699) #23 ENSNVIG00000008567 GPR155 (ENSNVIG00000008500) #25 SCRN3 (ENSNVIG00000008489) #26 CIR1 (ENSNVIG00000008463) #27 SP9 (ENSNVIG00000008457) #28 OLA1 (ENSNVIG00000008347) #29 SP3 (ENSNVIG00000008326) #30 ENSNVIG00000008301 CDCA7 (ENSNVIG00000008173) #31 ENSNVIG00000008110 RAPGEF4 (ENSNVIG00000007561) #33 PDK1 (ENSNVIG00000007527) #34 ITGA6 (ENSNVIG00000007078) #35 DLX2 (ENSNVIG00000007019) #36 Ferret MODERN SPECIES 359 HOXD1 (ENSMPUG00000014084) #11 ENSMPUG00000014080 HOXD3 (ENSMPUG00000014072) #12 HOXD4 (ENSMPUG00000014070) #13 ENSMPUG00000014067 ENSMPUG00000014060 #14 HOXD9 (ENSMPUG00000014053) HOXD10 (ENSMPUG00000014049) #15 HOXD11 (ENSMPUG00000014029) #16 HOXD12 (ENSMPUG00000014025) #17 HOXD13 (ENSMPUG00000014022) EVX2 (ENSMPUG00000014012) #18 LNPK (ENSMPUG00000014007) #19 ATP5MC3 (ENSMPUG00000013986) #20 ATF2 (ENSMPUG00000013983) #21 CHN1 (ENSMPUG00000013977) #22 CHRNA1 (ENSMPUG00000013974) #23 ENSMPUG00000013967 GPR155 (ENSMPUG00000013963) #25 SCRN3 (ENSMPUG00000013961) #26 ENSMPUG00000013943 #27 ENSMPUG00000013940 ENSMPUG00000013934 SP9 (ENSMPUG00000013931) #28 OLA1 (ENSMPUG00000013906) #29 SP3 (ENSMPUG00000013903) #30 Ursidae ANCESTRAL SPECIES 7 ENSGT00940000153147.m.a.a.a.b.b ##9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a.m.b #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00910000147479.a.b ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000005254.i.a.b ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 Giant Panda MODERN SPECIES 11 ENSAMEG00000019906 MTX2 (ENSAMEG00000001799) #10 HOXD1 (ENSAMEG00000028345) #11 HOXD3 (ENSAMEG00000026957) #12 HOXD4 (ENSAMEG00000025663) #13 HOXD8 (ENSAMEG00000023565) #14 HOXD9 (ENSAMEG00000029987) HOXD10 (ENSAMEG00000001849) #15 ENSAMEG00000025193 #16 HOXD12 (ENSAMEG00000023609) #17 HOXD13 (ENSAMEG00000001865) EVX2 (ENSAMEG00000001868) #18 LNPK (ENSAMEG00000001869) #19 ATP5MC3 (ENSAMEG00000012367) #20 ATF2 (ENSAMEG00000012333) #21 CHN1 (ENSAMEG00000012304) #22 CHRNA1 (ENSAMEG00000012277) #23 WIPF1 (ENSAMEG00000012269) #24 ENSAMEG00000027164 GPR155 (ENSAMEG00000012251) #25 SCRN3 (ENSAMEG00000012230) #26 CIR1 (ENSAMEG00000012211) #27 SP9 (ENSAMEG00000028382) #28 ENSAMEG00000025792 OLA1 (ENSAMEG00000012204) #29 ENSAMEG00000024507 SP3 (ENSAMEG00000000258) #30 ENSAMEG00000028241 ENSAMEG00000000267 #31 ENSAMEG00000000282 RAPGEF4 (ENSAMEG00000000315) #33 Ursus ANCESTRAL SPECIES 4 ENSGT00940000153147.m.a.a.a.b.b ##9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a.m.b #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00910000147479.a.b ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000005254.i.a.b ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 Polar bear MODERN SPECIES 142 OSBPL6 (ENSUMAG00000016519) RBM45 (ENSUMAG00000016503) PDE11A (ENSUMAG00000016414) ENSUMAG00000016390 AGPS (ENSUMAG00000015781) #7 NFE2L2 (ENSUMAG00000015689) #8 ENSUMAG00000015686 ##9 MTX2 (ENSUMAG00000015662) #10 HOXD4 (ENSUMAG00000015658) #13 ENSUMAG00000015653 #14 HOXD10 (ENSUMAG00000015650) #15 ENSUMAG00000015649 #16 LNPK (ENSUMAG00000015613) #19 ATP5MC3 (ENSUMAG00000015579) #20 ATF2 (ENSUMAG00000015564) #21 CHN1 (ENSUMAG00000015511) #22 CHRNA1 (ENSUMAG00000015480) #23 ENSUMAG00000015473 ENSUMAG00000015461 GPR155 (ENSUMAG00000015425) #25 SCRN3 (ENSUMAG00000015422) #26 CIR1 (ENSUMAG00000015415) #27 ENSUMAG00000015413 OLA1 (ENSUMAG00000015410) #29 SP3 (ENSUMAG00000015395) #30 ENSUMAG00000015375 CDCA7 (ENSUMAG00000015367) #31 ENSUMAG00000015337 #32 RAPGEF4 (ENSUMAG00000015328) #33 PDK1 (ENSUMAG00000015250) #34 ITGA6 (ENSUMAG00000014604) #35 American black bear MODERN SPECIES 1124 CHN1 (ENSUAMG00000006177) #22 ENSUAMG00000006180 CHRNA1 (ENSUAMG00000006186) #23 WIPF1 (ENSUAMG00000006198) #24 ENSUAMG00000006207 GPR155 (ENSUAMG00000006210) #25 SCRN3 (ENSUAMG00000006214) #26 Laurasiatheria_c ANCESTRAL SPECIES 18 ENSGT00940000153147.m.a.a.a.b.a.b #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000175090 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 Equus ANCESTRAL SPECIES 18 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000005569.x.a.a.b ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000175090 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 Donkey MODERN SPECIES 24 MTX2 (ENSEASG00005022537) #10 HOXD1 (ENSEASG00005030887) #11 HOXD3 (ENSEASG00005022544) #12 HOXD4 (ENSEASG00005024806) #13 HOXD8 (ENSEASG00005033905) #14 HOXD9 (ENSEASG00005023994) HOXD10 (ENSEASG00005022552) #15 HOXD11 (ENSEASG00005030904) #16 HOXD12 (ENSEASG00005022555) #17 HOXD13 (ENSEASG00005029242) EVX2 (ENSEASG00005022562) #18 ENSEASG00005022564 LNPK (ENSEASG00005022567) #19 ATP5MC3 (ENSEASG00005022573) #20 ATF2 (ENSEASG00005022575) #21 CHN1 (ENSEASG00005022579) #22 CHRNA1 (ENSEASG00005022581) #23 WIPF1 (ENSEASG00005022583) #24 GPR155 (ENSEASG00005022591) #25 SCRN3 (ENSEASG00005022597) #26 CIR1 (ENSEASG00005022598) #27 SP9 (ENSEASG00005022600) #28 OLA1 (ENSEASG00005022603) #29 SP3 (ENSEASG00005022608) #30 CDCA7 (ENSEASG00005022615) #31 ENSEASG00005034775 ENSEASG00005022618 #32 RAPGEF4 (ENSEASG00005022625) #33 PDK1 (ENSEASG00005022633) #34 ITGA6 (ENSEASG00005022636) #35 DLX2 (ENSEASG00005022641) #36 Horse MODERN SPECIES 9 HNRNPA3 (ENSECAG00000059976) #9 MTX2 (ENSECAG00000022464) #10 HOXD1 (ENSECAG00000035437) #11 HOXD3 (ENSECAG00000022129) #12 HOXD4 (ENSECAG00000038429) #13 HOXD8 (ENSECAG00000021980) #14 HOXD9 (ENSECAG00000021845) HOXD10 (ENSECAG00000020599) #15 HOXD11 (ENSECAG00000003045) #16 HOXD13 (ENSECAG00000020388) EVX2 (ENSECAG00000019796) #18 ENSECAG00000043913 LNPK (ENSECAG00000008534) #19 ATP5MC3 (ENSECAG00000008514) #20 ATF2 (ENSECAG00000018723) #21 CHN1 (ENSECAG00000008277) #22 CHRNA1 (ENSECAG00000019649) #23 WIPF1 (ENSECAG00000015984) GPR155 (ENSECAG00000008471) #25 SCRN3 (ENSECAG00000018530) #26 CIR1 (ENSECAG00000006773) #27 SP9 (ENSECAG00000028902) #28 OLA1 (ENSECAG00000016353) #29 SP3 (ENSECAG00000013930) #30 CDCA7 (ENSECAG00000011492) #31 ENSECAG00000000477 RAPGEF4 (ENSECAG00000017755) #33 PDK1 (ENSECAG00000006213) #34 ITGA6 (ENSECAG00000001652) #35 DLX2 (ENSECAG00000000452) #36 DLX1 (ENSECAG00000024861) #37 Chiroptera ANCESTRAL SPECIES 11 ENSGT00940000153147.m.a.a.a.b.a.a ##9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00940000160029 #37 Megabat MODERN SPECIES 854 CHN1 (ENSPVAG00000004165) #22 CHRNA1 (ENSPVAG00000004164) #23 Microchiroptera ANCESTRAL SPECIES 15 ENSGT00940000153147.m.a.a.a.b.a.a ##9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00940000160029 #37 Greater horseshoe bat MODERN SPECIES 26 ENSRFEG00010022161 ##9 MTX2 (ENSRFEG00010022163) #10 HOXD1 (ENSRFEG00010022164) #11 HOXD3 (ENSRFEG00010022165) #12 HOXD4 (ENSRFEG00010022166) #13 HOXD8 (ENSRFEG00010022168) #14 HOXD9 (ENSRFEG00010022169) HOXD10 (ENSRFEG00010022170) #15 HOXD11 (ENSRFEG00010022171) #16 HOXD12 (ENSRFEG00010022172) #17 HOXD13 (ENSRFEG00010022173) EVX2 (ENSRFEG00010000230) #18 LNPK (ENSRFEG00010000270) #19 ENSRFEG00010000353 #20 ATF2 (ENSRFEG00010000479) #21 CHN1 (ENSRFEG00010000595) #22 CHRNA1 (ENSRFEG00010000686) #23 WIPF1 (ENSRFEG00010000762) #24 GPR155 (ENSRFEG00010000805) #25 SCRN3 (ENSRFEG00010000835) #26 CIR1 (ENSRFEG00010000863) #27 SP9 (ENSRFEG00010000885) #28 ENSRFEG00010000897 OLA1 (ENSRFEG00010000935) #29 SP3 (ENSRFEG00010000991) #30 CDCA7 (ENSRFEG00010001045) #31 ENSRFEG00010001183 RAPGEF4 (ENSRFEG00010001360) #33 ENSRFEG00010001688 PDK1 (ENSRFEG00010001709) #34 ITGA6 (ENSRFEG00010001783) #35 Microbat MODERN SPECIES 942 ENSMLUG00000003906 ##9 MTX2 (ENSMLUG00000015966) #10 ENSMLUG00000029447 #11 HOXD3 (ENSMLUG00000012510) #12 HOXD4 (ENSMLUG00000012508) #13 HOXD8 (ENSMLUG00000028864) #14 HOXD10 (ENSMLUG00000007048) #15 HOXD11 (ENSMLUG00000007030) #16 HOXD12 (ENSMLUG00000007009) #17 HOXD13 (ENSMLUG00000006997) EVX2 (ENSMLUG00000006989) #18 ENSMLUG00000022478 LNPK (ENSMLUG00000006972) #19 ENSMLUG00000012822 #20 ATF2 (ENSMLUG00000015718) #21 CHN1 (ENSMLUG00000015709) #22 CHRNA1 (ENSMLUG00000015698) #23 WIPF1 (ENSMLUG00000022385) #24 GPR155 (ENSMLUG00000013828) #25 SCRN3 (ENSMLUG00000013823) #26 CIR1 (ENSMLUG00000013807) #27 ENSMLUG00000025196 #29 SP3 (ENSMLUG00000006791) #30 CDCA7 (ENSMLUG00000006634) #31 ENSMLUG00000006601 ENSMLUG00000005569 #33 ENSMLUG00000030219 #33 PDK1 (ENSMLUG00000005562) #34 ITGA6 (ENSMLUG00000005550) #35 HAT1 (ENSMLUG00000017163) DLX2 (ENSMLUG00000025271) #36 Atlantogenata ANCESTRAL SPECIES 9 ENSGT00940000153147.m.a.a #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 Xenarthra ANCESTRAL SPECIES 11 ENSGT00950000182892.a.a.b #8 ENSGT00940000153147.m.a.a #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 Sloth MODERN SPECIES 2277 CHN1 (ENSCHOG00000003425) #22 Armadillo MODERN SPECIES 3580 HNRNPA3 (ENSDNOG00000019022) #9 MTX2 (ENSDNOG00000034659) #10 HOXD1 (ENSDNOG00000019807) #11 HOXD3 (ENSDNOG00000035593) #12 HOXD4 (ENSDNOG00000019805) #13 HOXD8 (ENSDNOG00000036145) #14 HOXD10 (ENSDNOG00000034389) #15 HOXD11 (ENSDNOG00000044260) #16 HOXD12 (ENSDNOG00000047700) #17 HOXD13 (ENSDNOG00000019799) EVX2 (ENSDNOG00000019797) #18 ENSDNOG00000045361 LNPK (ENSDNOG00000039308) #19 ENSDNOG00000044678 #20 ATF2 (ENSDNOG00000015229) #21 CHN1 (ENSDNOG00000037568) #22 CHRNA1 (ENSDNOG00000016153) #23 ENSDNOG00000033898 ENSDNOG00000041872 GPR155 (ENSDNOG00000007590) #25 SCRN3 (ENSDNOG00000035179) #26 CIR1 (ENSDNOG00000033913) #27 SP9 (ENSDNOG00000019150) #28 OLA1 (ENSDNOG00000010630) #29 ENSDNOG00000044516 SP3 (ENSDNOG00000048996) #30 CDCA7 (ENSDNOG00000019442) #31 MAP3K20 (ENSDNOG00000006902) #32 RAPGEF4 (ENSDNOG00000006875) #33 Afrotheria ANCESTRAL SPECIES 1 ENSGT00940000154808.a.a ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a.e #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00940000160029 #37 Tenrec MODERN SPECIES 2549 CHN1 (ENSETEG00000012365) #22 Afrotheria_a ANCESTRAL SPECIES 1 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a.e #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00940000160029 #37 Elephant MODERN SPECIES 301 AGPS (ENSLAFG00000014990) #7 NFE2L2 (ENSLAFG00000016263) #8 ENSLAFG00000027712 MTX2 (ENSLAFG00000013982) #10 HOXD3 (ENSLAFG00000005477) #12 HOXD4 (ENSLAFG00000005480) #13 HOXD8 (ENSLAFG00000004364) #14 HOXD9 (ENSLAFG00000011494) HOXD10 (ENSLAFG00000013262) #15 HOXD12 (ENSLAFG00000017497) #17 HOXD13 (ENSLAFG00000027629) EVX2 (ENSLAFG00000013264) #18 LNPK (ENSLAFG00000004502) #19 ENSLAFG00000010768 #20 ATF2 (ENSLAFG00000006463) #21 CHN1 (ENSLAFG00000011074) #22 CHRNA1 (ENSLAFG00000011067) #23 WIPF1 (ENSLAFG00000028992) #24 GPR155 (ENSLAFG00000010245) #25 SCRN3 (ENSLAFG00000010241) #26 CIR1 (ENSLAFG00000010236) #27 SP9 (ENSLAFG00000026573) #28 OLA1 (ENSLAFG00000002706) #29 ENSLAFG00000032705 SP3 (ENSLAFG00000013121) #30 CDCA7 (ENSLAFG00000013007) #31 ENSLAFG00000002511 ENSLAFG00000017140 RAPGEF4 (ENSLAFG00000009822) #33 PDK1 (ENSLAFG00000004732) #34 ITGA6 (ENSLAFG00000004724) #35 Hyrax MODERN SPECIES 2846 ENSPCAG00000002371 #22 CHRNA1 (ENSPCAG00000002316) #23 Marsupialia ANCESTRAL SPECIES 5 ENSGT00950000182919.C.k #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00940000173501 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00570000080031 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 Marsupialia_b ANCESTRAL SPECIES 3 ENSGT00950000182919.C.k #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00940000173501 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00570000080031 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 Diprotodontia ANCESTRAL SPECIES 11 ENSGT00950000182919.C.k #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00940000173501 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00570000080031 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 Diprotodontia_a ANCESTRAL SPECIES 9 ENSGT00950000182919.C.k.a #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00940000173501 ENSGT00390000001859 #19 ENSGT00940000154298.a.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00940000160029 #37 Common wonbat MODERN SPECIES 1018 ENSVURG00010019134 ENSVURG00010019141 #10 HOXD1 (ENSVURG00010019147) #11 HOXD3 (ENSVURG00010019148) #12 HOXD4 (ENSVURG00010019150) #13 HOXD8 (ENSVURG00010019156) #14 HOXD9 (ENSVURG00010019159) HOXD10 (ENSVURG00010019165) #15 ENSVURG00010019168 #16 HOXD12 (ENSVURG00010019173) #17 HOXD13 (ENSVURG00010019176) EVX2 (ENSVURG00010019179) #18 LNPK (ENSVURG00010019192) #19 ENSVURG00010019213 #20 ATF2 (ENSVURG00010019225) #21 CHN1 (ENSVURG00010019258) #22 CHRNA1 (ENSVURG00010019276) #23 WIPF1 (ENSVURG00010019295) #24 GPR155 (ENSVURG00010019311) #25 SCRN3 (ENSVURG00010019366) #26 CIR1 (ENSVURG00010019374) #27 SP9 (ENSVURG00010019382) #28 OLA1 (ENSVURG00010019396) #29 SP3 (ENSVURG00010019427) #30 ENSVURG00010019448 #31 MAP3K20 (ENSVURG00010019465) #32 RAPGEF4 (ENSVURG00010019514) #33 PDK1 (ENSVURG00010019726) #34 ITGA6 (ENSVURG00010019751) #35 DLX2 (ENSVURG00010019774) #36 DLX1 (ENSVURG00010019779) #37 koala MODERN SPECIES 40 MTX2 (ENSPCIG00000006277) #10 HOXD1 (ENSPCIG00000026501) #11 HOXD4 (ENSPCIG00000026503) #13 HOXD3 (ENSPCIG00000026502) #12 HOXD8 (ENSPCIG00000029145) #14 HOXD9 (ENSPCIG00000033878) HOXD10 (ENSPCIG00000029143) #15 ENSPCIG00000034132 #16 HOXD12 (ENSPCIG00000029141) #17 HOXD13 (ENSPCIG00000029140) EVX2 (ENSPCIG00000029139) #18 ENSPCIG00000034586 LNPK (ENSPCIG00000029137) #19 ENSPCIG00000026281 #20 ATF2 (ENSPCIG00000026284) #21 CHN1 (ENSPCIG00000026288) #22 CHRNA1 (ENSPCIG00000026290) #23 ENSPCIG00000034435 WIPF1 (ENSPCIG00000026292) #24 GPR155 (ENSPCIG00000026300) #25 ENSPCIG00000027329 SCRN3 (ENSPCIG00000027336) #26 CIR1 (ENSPCIG00000027338) #27 SP9 (ENSPCIG00000027340) #28 OLA1 (ENSPCIG00000026763) #29 SP3 (ENSPCIG00000016653) #30 CDCA7 (ENSPCIG00000022203) #31 MAP3K20 (ENSPCIG00000022211) #32 RAPGEF4 (ENSPCIG00000028745) #33 PDK1 (ENSPCIG00000022240) #34 ITGA6 (ENSPCIG00000022252) #35 Wallaby MODERN SPECIES 3462 ENSMEUG00000008006 #22 Tasmanian devil MODERN SPECIES 2 HNRNPA3 (ENSSHAG00000022116) #9 MTX2 (ENSSHAG00000016381) #10 HOXD1 (ENSSHAG00000016187) #11 HOXD4 (ENSSHAG00000024760) #13 HOXD3 (ENSSHAG00000024332) #12 HOXD8 (ENSSHAG00000026470) #14 HOXD9 (ENSSHAG00000021426) HOXD10 (ENSSHAG00000016004) #15 HOXD11 (ENSSHAG00000021515) #16 HOXD12 (ENSSHAG00000021387) #17 HOXD13 (ENSSHAG00000015915) EVX2 (ENSSHAG00000015873) #18 LNPK (ENSSHAG00000031133) #19 ATP5MC3 (ENSSHAG00000028674) #20 ATF2 (ENSSHAG00000029247) #21 CHN1 (ENSSHAG00000008483) #22 CHRNA1 (ENSSHAG00000007749) #23 WIPF1 (ENSSHAG00000005304) #24 GPR155 (ENSSHAG00000001210) #25 SCRN3 (ENSSHAG00000015809) #26 CIR1 (ENSSHAG00000015674) #27 SP9 (ENSSHAG00000022043) #28 OLA1 (ENSSHAG00000020604) #29 ENSSHAG00000013923 #30 ENSSHAG00000024673 ENSSHAG00000012578 ENSSHAG00000010185 #31 MAP3K20 (ENSSHAG00000008034) #32 RAPGEF4 (ENSSHAG00000006723) #33 PDK1 (ENSSHAG00000017496) #34 ITGA6 (ENSSHAG00000017311) #35 Opossum MODERN SPECIES 3 MTX2 (ENSMODG00000009617) #10 HOXD1 (ENSMODG00000009604) #11 HOXD3 (ENSMODG00000046524) #12 HOXD4 (ENSMODG00000009598) #13 HOXD8 (ENSMODG00000009593) #14 HOXD9 (ENSMODG00000009591) HOXD10 (ENSMODG00000009577) #15 HOXD11 (ENSMODG00000009565) #16 HOXD12 (ENSMODG00000024741) #17 HOXD13 (ENSMODG00000009550) EVX2 (ENSMODG00000009546) #18 ENSMODG00000009536 #19 ENSMODG00000047401 ENSMODG00000009520 #20 ATF2 (ENSMODG00000009514) #21 CHN1 (ENSMODG00000009464) #22 CHRNA1 (ENSMODG00000009414) #23 WIPF1 (ENSMODG00000009366) #24 GPR155 (ENSMODG00000009362) #25 SCRN3 (ENSMODG00000009337) #26 CIR1 (ENSMODG00000037714) #27 SP9 (ENSMODG00000009303) #28 OLA1 (ENSMODG00000009296) #29 SP3 (ENSMODG00000009184) #30 ENSMODG00000024765 CDCA7 (ENSMODG00000009162) #31 MAP3K20 (ENSMODG00000009134) #32 RAPGEF4 (ENSMODG00000009089) #33 ENSMODG00000009035 #34 ITGA6 (ENSMODG00000009009) #35 DLX2 (ENSMODG00000008899) #36 Platypus MODERN SPECIES 20 HNRNPA3 (ENSOANG00000008622) #9 MTX2 (ENSOANG00000008621) #10 HOXD1 (ENSOANG00000043961) #11 HOXD3 (ENSOANG00000038024) #12 HOXD4 (ENSOANG00000037495) #13 HOXD8 (ENSOANG00000036079) #14 HOXD9 (ENSOANG00000008615) HOXD10 (ENSOANG00000037187) #15 HOXD11 (ENSOANG00000048827) #16 HOXD12 (ENSOANG00000004743) #17 HOXD13 (ENSOANG00000043790) EVX2 (ENSOANG00000042825) #18 LNPK (ENSOANG00000008614) #19 ATP5MC3 (ENSOANG00000046084) #20 ATF2 (ENSOANG00000008612) #21 CHN1 (ENSOANG00000008609) #22 CHRNA1 (ENSOANG00000008607) #23 ENSOANG00000008606 GPR155 (ENSOANG00000008605) #25 SCRN3 (ENSOANG00000008604) #26 CIR1 (ENSOANG00000037110) #27 SP9 (ENSOANG00000036313) #28 OLA1 (ENSOANG00000008601) #29 SP3 (ENSOANG00000008599) #30 CDCA7 (ENSOANG00000008596) #31 MAP3K20 (ENSOANG00000008595) RAPGEF4 (ENSOANG00000008592) #33 ENSOANG00000008591 ITGA6 (ENSOANG00000008589) #35 DLX2 (ENSOANG00000008584) #36 DLX1 (ENSOANG00000045199) #37 Sauria ANCESTRAL SPECIES ENSGT00940000153147 #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000154076.B.b ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000175090 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00940000164127 Archelosauria ANCESTRAL SPECIES 8 ENSGT00940000153147 #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000154076.B.b ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000175090 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00940000164127 Archosauria ANCESTRAL SPECIES 6 ENSGT00940000153147 #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000154076.B.b ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000175090 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00940000164127 Aves ANCESTRAL SPECIES 8 ENSGT00940000153147 #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000175090 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b #34 Neognathae ANCESTRAL SPECIES 6 ENSGT00940000153147 #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000175090 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b #34 Neognathae_b ANCESTRAL SPECIES 7 ENSGT00950000182892.a.a.b #8 ENSGT00940000153147 #9 ENSGT00950000182919.C #10 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000175090 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 Neognathae_c ANCESTRAL SPECIES 9 ENSGT00950000182892.a.a.b #8 ENSGT00940000153147 #9 ENSGT00950000182919.C #10 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 Golden eagle MODERN SPECIES 22 NFE2L2 (ENSACCG00020003695) #8 HNRNPA3 (ENSACCG00020003720) #9 MTX2 (ENSACCG00020003762) #10 HOXD3 (ENSACCG00020003777) #12 HOXD4 (ENSACCG00020003785) #13 HOXD8 (ENSACCG00020003802) #14 HOXD9 (ENSACCG00020003811) HOXD10 (ENSACCG00020003829) #15 HOXD11 (ENSACCG00020003844) #16 HOXD12 (ENSACCG00020003850) #17 HOXD13 (ENSACCG00020003861) EVX2 (ENSACCG00020003885) #18 LNPK (ENSACCG00020003901) #19 ATP5MC3 (ENSACCG00020003917) #20 ATF2 (ENSACCG00020003942) #21 CHN1 (ENSACCG00020003968) #22 CHRNA1 (ENSACCG00020003985) #23 WIPF1 (ENSACCG00020004004) #24 GPR155 (ENSACCG00020004015) #25 SCRN3 (ENSACCG00020004026) #26 CIR1 (ENSACCG00020004036) #27 SP9 (ENSACCG00020004044) #28 OLA1 (ENSACCG00020004056) #29 SP3 (ENSACCG00020004066) #30 CDCA7 (ENSACCG00020004079) #31 MAP3K20 (ENSACCG00020004096) #32 RAPGEF4 (ENSACCG00020004198) #33 ENSACCG00020004271 PDK1 (ENSACCG00020008395) #34 ITGA6 (ENSACCG00020008441) #35 DLX2 (ENSACCG00020008470) #36 Kakapo MODERN SPECIES 22 NFE2L2 (ENSSHBG00005003133) #8 HNRNPA3 (ENSSHBG00005003156) #9 MTX2 (ENSSHBG00005003180) #10 HOXD3 (ENSSHBG00005003209) #12 HOXD4 (ENSSHBG00005003224) #13 HOXD8 (ENSSHBG00005003238) #14 HOXD9 (ENSSHBG00005003249) HOXD10 (ENSSHBG00005003256) #15 HOXD11 (ENSSHBG00005003263) #16 HOXD12 (ENSSHBG00005003274) #17 HOXD13 (ENSSHBG00005003286) EVX2 (ENSSHBG00005003303) #18 LNPK (ENSSHBG00005003318) #19 ATP5MC3 (ENSSHBG00005003340) #20 ATF2 (ENSSHBG00005003358) #21 CHN1 (ENSSHBG00005003384) #22 CHRNA1 (ENSSHBG00005003452) #23 WIPF1 (ENSSHBG00005003524) #24 GPR155 (ENSSHBG00005003538) #25 SCRN3 (ENSSHBG00005003550) #26 CIR1 (ENSSHBG00005003557) #27 SP9 (ENSSHBG00005003570) #28 OLA1 (ENSSHBG00005003576) #29 SP3 (ENSSHBG00005003600) #30 CDCA7 (ENSSHBG00005003621) #31 RAPGEF4 (ENSSHBG00005003811) #33 MAP3K20 (ENSSHBG00005004430) #32 ENSSHBG00005004460 PDK1 (ENSSHBG00005004476) #34 ITGA6 (ENSSHBG00005004486) #35 DLX2 (ENSSHBG00005004508) #36 Passeriformes ANCESTRAL SPECIES 6 ENSGT00950000182892.a.a.b #8 ENSGT00940000153147 #9 ENSGT00950000182919.C #10 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000175090 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 Passeriformes_d ANCESTRAL SPECIES 8 ENSGT00950000182892.a.a.b #8 ENSGT00940000153147 #9 ENSGT00950000182919.C #10 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000175090 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 Passeriformes_g ANCESTRAL SPECIES 9 ENSGT00950000182892.a.a.b #8 ENSGT00940000153147 #9 ENSGT00950000182919.C #10 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000175090 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 Passeroidea ANCESTRAL SPECIES 8 ENSGT00950000182892.a.a.b #8 ENSGT00940000153147 #9 ENSGT00950000182919.C #10 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000175090 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 Common canary MODERN SPECIES 8 AGPS (ENSSCAG00000016170) #7 NFE2L2 (ENSSCAG00000016126) #8 HNRNPA3 (ENSSCAG00000016118) #9 MTX2 (ENSSCAG00000016113) #10 HOXD3 (ENSSCAG00000016112) #12 HOXD4 (ENSSCAG00000016111) #13 HOXD8 (ENSSCAG00000016107) #14 ENSSCAG00000016106 HOXD10 (ENSSCAG00000016104) #15 HOXD11 (ENSSCAG00000016103) #16 HOXD12 (ENSSCAG00000016102) #17 HOXD13 (ENSSCAG00000016098) LNPK (ENSSCAG00000016094) #19 ATP5MC3 (ENSSCAG00000016089) #20 ATF2 (ENSSCAG00000016084) #21 CHN1 (ENSSCAG00000016062) #22 CHRNA1 (ENSSCAG00000016051) #23 ENSSCAG00000016047 #24 GPR155 (ENSSCAG00000016043) #25 SCRN3 (ENSSCAG00000016037) #26 CIR1 (ENSSCAG00000016033) #27 OLA1 (ENSSCAG00000016031) #29 SP3 (ENSSCAG00000016025) #30 CDCA7 (ENSSCAG00000016020) #31 ENSSCAG00000016018 MAP3K20 (ENSSCAG00000016014) #32 RAPGEF4 (ENSSCAG00000015968) #33 ENSSCAG00000015944 PDK1 (ENSSCAG00000015939) #34 ITGA6 (ENSSCAG00000015932) #35 DLX2 (ENSSCAG00000015928) #36 Zebra finch MODERN SPECIES 29 NFE2L2 (ENSTGUG00000009026) #8 HNRNPA3 (ENSTGUG00000008996) #9 MTX2 (ENSTGUG00000019630) #10 HOXD3 (ENSTGUG00000025792) #12 HOXD4 (ENSTGUG00000008959) #13 HOXD8 (ENSTGUG00000022095) #14 HOXD9 (ENSTGUG00000008955) HOXD10 (ENSTGUG00000008948) #15 HOXD11 (ENSTGUG00000008941) #16 HOXD12 (ENSTGUG00000008938) #17 HOXD13 (ENSTGUG00000022083) EVX2 (ENSTGUG00000008931) #18 LNPK (ENSTGUG00000021038) #19 ATP5MC3 (ENSTGUG00000008907) #20 ATF2 (ENSTGUG00000008880) #21 CHN1 (ENSTGUG00000008848) #22 CHRNA1 (ENSTGUG00000008827) #23 WIPF1 (ENSTGUG00000008798) #24 GPR155 (ENSTGUG00000008786) #25 SCRN3 (ENSTGUG00000008770) #26 CIR1 (ENSTGUG00000008746) #27 SP9 (ENSTGUG00000025759) #28 OLA1 (ENSTGUG00000008710) #29 SP3 (ENSTGUG00000008690) #30 CDCA7 (ENSTGUG00000008676) #31 MAP3K20 (ENSTGUG00000026276) #32 RAPGEF4 (ENSTGUG00000008556) #33 ENSTGUG00000008541 PDK1 (ENSTGUG00000008513) #34 ITGA6 (ENSTGUG00000008382) #35 DLX2 (ENSTGUG00000008381) #36 Medium ground finch MODERN SPECIES 1 HNRNPA3 (ENSGFOG00000006562) #9 MTX2 (ENSGFOG00000006557) #10 ENSGFOG00000006552 #12 HOXD4 (ENSGFOG00000006548) #13 HOXD8 (ENSGFOG00000006540) #14 ENSGFOG00000006539 ENSGFOG00000006537 HOXD10 (ENSGFOG00000006531) #15 HOXD11 (ENSGFOG00000006526) #16 HOXD12 (ENSGFOG00000006522) #17 HOXD13 (ENSGFOG00000006517) LNPK (ENSGFOG00000006507) #19 ATP5MC3 (ENSGFOG00000006500) #20 ATF2 (ENSGFOG00000006478) #21 ENSGFOG00000006464 CHN1 (ENSGFOG00000006455) #22 CHRNA1 (ENSGFOG00000006450) #23 ENSGFOG00000006445 #24 GPR155 (ENSGFOG00000006436) #25 SCRN3 (ENSGFOG00000006425) #26 CIR1 (ENSGFOG00000006417) #27 OLA1 (ENSGFOG00000006405) #29 SP3 (ENSGFOG00000006378) #30 CDCA7 (ENSGFOG00000006353) #31 MAP3K20 (ENSGFOG00000006330) #32 RAPGEF4 (ENSGFOG00000006285) #33 ENSGFOG00000006252 PDK1 (ENSGFOG00000006234) #34 ITGA6 (ENSGFOG00000006192) #35 DLX1 (ENSGFOG00000006179) #37 METAP1D (ENSGFOG00000006168) Flycatcher MODERN SPECIES 26 NFE2L2 (ENSFALG00000003227) #8 HNRNPA3 (ENSFALG00000003215) #9 MTX2 (ENSFALG00000003201) #10 HOXD3 (ENSFALG00000003190) #12 HOXD4 (ENSFALG00000026047) #13 HOXD8 (ENSFALG00000027818) #14 HOXD9 (ENSFALG00000025965) HOXD10 (ENSFALG00000003142) #15 HOXD11 (ENSFALG00000014318) #16 HOXD12 (ENSFALG00000003122) #17 HOXD13 (ENSFALG00000003118) EVX2 (ENSFALG00000003109) #18 LNPK (ENSFALG00000003104) #19 ATP5MC3 (ENSFALG00000003095) #20 ATF2 (ENSFALG00000003087) #21 CHN1 (ENSFALG00000003058) #22 CHRNA1 (ENSFALG00000003034) #23 ENSFALG00000003030 #24 ENSFALG00000027529 GPR155 (ENSFALG00000003023) #25 SCRN3 (ENSFALG00000003013) #26 CIR1 (ENSFALG00000002994) #27 SP9 (ENSFALG00000023524) #28 OLA1 (ENSFALG00000002944) #29 SP3 (ENSFALG00000002922) #30 CDCA7 (ENSFALG00000002918) #31 MAP3K20 (ENSFALG00000002910) #32 RAPGEF4 (ENSFALG00000002257) #33 ENSFALG00000002036 PDK1 (ENSFALG00000024030) #34 ITGA6 (ENSFALG00000002030) #35 Great tit MODERN SPECIES 27 NFE2L2 (ENSPMJG00000018516) #8 HNRNPA3 (ENSPMJG00000018517) #9 MTX2 (ENSPMJG00000018521) #10 HOXD3 (ENSPMJG00000018522) #12 HOXD4 (ENSPMJG00000018523) #13 HOXD8 (ENSPMJG00000018525) #14 HOXD9 (ENSPMJG00000018527) HOXD10 (ENSPMJG00000018528) #15 HOXD11 (ENSPMJG00000018529) #16 HOXD12 (ENSPMJG00000018530) #17 HOXD13 (ENSPMJG00000018531) EVX2 (ENSPMJG00000018532) #18 LNPK (ENSPMJG00000018533) #19 ATP5MC3 (ENSPMJG00000018536) #20 ATF2 (ENSPMJG00000018537) #21 CHN1 (ENSPMJG00000018538) #22 CHRNA1 (ENSPMJG00000018564) #23 ENSPMJG00000018566 #24 GPR155 (ENSPMJG00000018567) #25 SCRN3 (ENSPMJG00000018568) #26 CIR1 (ENSPMJG00000018569) #27 SP9 (ENSPMJG00000018570) #28 OLA1 (ENSPMJG00000018572) #29 SP3 (ENSPMJG00000018573) #30 CDCA7 (ENSPMJG00000018577) #31 MAP3K20 (ENSPMJG00000018578) #32 RAPGEF4 (ENSPMJG00000018579) #33 ENSPMJG00000018581 PDK1 (ENSPMJG00000018582) #34 ITGA6 (ENSPMJG00000018583) #35 DLX2 (ENSPMJG00000018585) #36 Galloanserae ANCESTRAL SPECIES 7 ENSGT00940000153147 #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653.c.a #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296.p #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000175090 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b #34 Anatidae ANCESTRAL SPECIES 10 ENSGT00940000153147 #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000157270 #13 ENSGT00940000160027 #12 ENSGT00940000161653.c.a #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296.p #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000175090 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 Pink-footed goose MODERN SPECIES 20 ENSABRG00000002541 MTX2 (ENSABRG00000002506) #10 HOXD1 (ENSABRG00000002496) #11 HOXD4 (ENSABRG00000002472) #13 HOXD3 (ENSABRG00000002455) #12 HOXD8 (ENSABRG00000002447) #14 HOXD9 (ENSABRG00000002443) HOXD10 (ENSABRG00000002435) #15 HOXD11 (ENSABRG00000002426) #16 HOXD12 (ENSABRG00000002420) #17 HOXD13 (ENSABRG00000002397) EVX2 (ENSABRG00000002357) #18 LNPK (ENSABRG00000002302) #19 ATP5MC3 (ENSABRG00000002218) #20 ATF2 (ENSABRG00000002181) #21 CHN1 (ENSABRG00000002131) #22 CHRNA1 (ENSABRG00000002084) #23 WIPF1 (ENSABRG00000002070) #24 GPR155 (ENSABRG00000001308) #25 SCRN3 (ENSABRG00000001275) #26 CIR1 (ENSABRG00000001225) #27 SP9 (ENSABRG00000001188) #28 OLA1 (ENSABRG00000001082) #29 SP3 (ENSABRG00000000846) #30 CDCA7 (ENSABRG00000023202) #31 MAP3K20 (ENSABRG00000023201) #32 RAPGEF4 (ENSABRG00000023200) #33 ENSABRG00000023199 PDK1 (ENSABRG00000023198) #34 ITGA6 (ENSABRG00000023197) #35 DLX2 (ENSABRG00000023196) #36 Duck MODERN SPECIES 25 NFE2L2 (ENSAPLG00000010103) #8 HNRNPA3 (ENSAPLG00000009620) #9 MTX2 (ENSAPLG00000009123) #10 HOXD4 (ENSAPLG00000008983) #13 HOXD3 (ENSAPLG00000025122) #12 HOXD8 (ENSAPLG00000008959) #14 HOXD9 (ENSAPLG00000023656) HOXD10 (ENSAPLG00000008956) #15 HOXD11 (ENSAPLG00000020921) #16 HOXD12 (ENSAPLG00000008820) #17 HOXD13 (ENSAPLG00000008742) ENSAPLG00000021400 LNPK (ENSAPLG00000008383) #19 ATP5MC3 (ENSAPLG00000025020) #20 ATF2 (ENSAPLG00000007673) #21 CHN1 (ENSAPLG00000007680) #22 CHRNA1 (ENSAPLG00000007803) #23 ENSAPLG00000025159 #24 GPR155 (ENSAPLG00000008000) #25 SCRN3 (ENSAPLG00000008066) #26 CIR1 (ENSAPLG00000008087) #27 SP9 (ENSAPLG00000026718) #28 OLA1 (ENSAPLG00000008147) #29 SP3 (ENSAPLG00000008201) #30 CDCA7 (ENSAPLG00000008313) #31 ENSAPLG00000008352 MAP3K20 (ENSAPLG00000013963) #32 RAPGEF4 (ENSAPLG00000013981) #33 ENSAPLG00000015004 PDK1 (ENSAPLG00000015342) #34 ITGA6 (ENSAPLG00000015601) #35 Phasianidae ANCESTRAL SPECIES 8 ENSGT00940000153147 #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653.c.a #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296.p #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 Japanese quail MODERN SPECIES 25 HNRNPA3 (ENSCJPG00005017720) #9 MTX2 (ENSCJPG00005017723) #10 HOXD1 (ENSCJPG00005017724) #11 HOXD3 (ENSCJPG00005017726) #12 HOXD4 (ENSCJPG00005017727) #13 HOXD8 (ENSCJPG00005017729) #14 HOXD9 (ENSCJPG00005017730) HOXD10 (ENSCJPG00005017731) #15 HOXD11 (ENSCJPG00005017732) #16 HOXD12 (ENSCJPG00005017733) #17 HOXD13 (ENSCJPG00005017734) EVX2 (ENSCJPG00005017735) #18 LNPK (ENSCJPG00005017736) #19 ATP5MC3 (ENSCJPG00005017742) #20 ATF2 (ENSCJPG00005017743) #21 CHN1 (ENSCJPG00005017745) #22 CHRNA1 (ENSCJPG00005017746) #23 ENSCJPG00005017747 #24 GPR155 (ENSCJPG00005017748) #25 SCRN3 (ENSCJPG00005017749) #26 CIR1 (ENSCJPG00005017750) #27 SP9 (ENSCJPG00005017751) #28 OLA1 (ENSCJPG00005017752) #29 SP3 (ENSCJPG00005017754) #30 CDCA7 (ENSCJPG00005017759) #31 MAP3K20 (ENSCJPG00005017760) #32 RAPGEF4 (ENSCJPG00005017761) #33 ENSCJPG00005017762 PDK1 (ENSCJPG00005017763) #34 ITGA6 (ENSCJPG00005017815) #35 DLX2 (ENSCJPG00005017816) #36 Phasianidae_b ANCESTRAL SPECIES 8 ENSGT00950000182892.a.a.b #8 ENSGT00940000153147 #9 ENSGT00950000182919.C #10 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653.c.a #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296.p #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 Chicken MODERN SPECIES 36 NFE2L2 (ENSGALG00010024107) #8 HNRNPA3 (ENSGALG00010024144) #9 MTX2 (ENSGALG00010024183) #10 HOXD3 (ENSGALG00010024724) #12 HOXD4 (ENSGALG00010024746) #13 HOXD8 (ENSGALG00010024753) #14 HOXD9 (ENSGALG00010024763) HOXD10 (ENSGALG00010026746) #15 HOXD11 (ENSGALG00010024780) #16 HOXD12 (ENSGALG00010024782) #17 HOXD13 (ENSGALG00010024790) EVX2 (ENSGALG00010025816) #18 LNPK (ENSGALG00010022433) #19 ATP5G3 (ENSGALG00010022456) #20 ATF2 (ENSGALG00010022485) #21 CHN1 (ENSGALG00010026697) #22 CHRNA1 (ENSGALG00010022515) #23 WIPF1 (ENSGALG00010022538) #24 GPR155 (ENSGALG00010022552) #25 SCRN3 (ENSGALG00010022568) #26 CIR1 (ENSGALG00010022585) #27 OLA1 (ENSGALG00010026724) #29 SP9 (ENSGALG00010022605) #28 SP3 (ENSGALG00010022643) #30 CDCA7 (ENSGALG00010021748) #31 MAP3K20 (ENSGALG00010021755) RAPGEF4 (ENSGALG00010021781) #33 PPP1R19L (ENSGALG00010021821) PDK1 (ENSGALG00010021862) #34 ITGA6 (ENSGALG00010021931) #35 DLX2 (ENSGALG00010021707) #36 Turkey MODERN SPECIES 27 HAT1 (ENSMGAG00000010025) ENSMGAG00000010014 ENSMGAG00000009918 #35 ENSMGAG00000017160 #34 ENSMGAG00000009894 ENSMGAG00000009870 #33 ENSMGAG00000009860 ENSMGAG00000009850 #31 ENSMGAG00000009845 #30 ENSMGAG00000009826 #29 ENSMGAG00000018366 #26 ENSMGAG00000009790 #25 ENSMGAG00000020130 #25 ENSMGAG00000021645 #24 ENSMGAG00000009779 #24 ENSMGAG00000009726 #22 ENSMGAG00000009752 #23 ENSMGAG00000021396 ENSMGAG00000020727 ATF2 (ENSMGAG00000009702) #21 ENSMGAG00000009721 #20 ENSMGAG00000009678 #19 ENSMGAG00000009673 #17 ENSMGAG00000009660 #16 ENSMGAG00000020970 #14 ENSMGAG00000017418 #14 ENSMGAG00000012324 DBI (ENSMGAG00000012315) ENSMGAG00000012320 STEAP3 (ENSMGAG00000012322) TMEM37 (ENSMGAG00000015938) African ostrich MODERN SPECIES 838 MTX2 (ENSSCUG00000017505) #10 HOXD4 (ENSSCUG00000017503) #13 HOXD8 (ENSSCUG00000017502) #14 HOXD9 (ENSSCUG00000017501) ENSSCUG00000017500 HOXD10 (ENSSCUG00000017499) #15 HOXD11 (ENSSCUG00000017498) #16 HOXD12 (ENSSCUG00000017497) #17 LNPK (ENSSCUG00000017495) #19 ATP5MC3 (ENSSCUG00000017492) #20 ATF2 (ENSSCUG00000017491) #21 CHN1 (ENSSCUG00000017488) #22 CHRNA1 (ENSSCUG00000017484) #23 ENSSCUG00000017481 #24 GPR155 (ENSSCUG00000017479) #25 SCRN3 (ENSSCUG00000017477) #26 CIR1 (ENSSCUG00000017475) #27 OLA1 (ENSSCUG00000017471) #29 SP3 (ENSSCUG00000017467) #30 CDCA7 (ENSSCUG00000017454) #31 ENSSCUG00000017453 MAP3K20 (ENSSCUG00000017452) #32 RAPGEF4 (ENSSCUG00000017451) #33 ENSSCUG00000017445 PDK1 (ENSSCUG00000017440) #34 ITGA6 (ENSSCUG00000017438) #35 DLX1 (ENSSCUG00000017437) #37 Australian saltwater crocodile MODERN SPECIES 66 ENSCPRG00005013800 MTX2 (ENSCPRG00005013807) #10 HOXD1 (ENSCPRG00005013818) #11 HOXD3 (ENSCPRG00005013823) #12 HOXD4 (ENSCPRG00005013826) #13 HOXD8 (ENSCPRG00005013830) #14 HOXD9 (ENSCPRG00005013832) HOXD10 (ENSCPRG00005013834) #15 HOXD11 (ENSCPRG00005013836) #16 HOXD12 (ENSCPRG00005013839) #17 HOXD13 (ENSCPRG00005013840) EVX2 (ENSCPRG00005013841) #18 LNPK (ENSCPRG00005013854) #19 ATP5MC3 (ENSCPRG00005013858) #20 ATF2 (ENSCPRG00005013860) #21 CHN1 (ENSCPRG00005013868) #22 CHRNA1 (ENSCPRG00005013873) #23 WIPF1 (ENSCPRG00005013893) #24 GPR155 (ENSCPRG00005013904) #25 SCRN3 (ENSCPRG00005013907) #26 CIR1 (ENSCPRG00005013911) #27 OLA1 (ENSCPRG00005013919) #29 SP3 (ENSCPRG00005013930) #30 ENSCPRG00005013941 CDCA7 (ENSCPRG00005013947) #31 ENSCPRG00005013951 RAPGEF4 (ENSCPRG00005013961) #33 ENSCPRG00005013976 PDK1 (ENSCPRG00005013981) #34 ITGA6 (ENSCPRG00005013998) #35 DLX2 (ENSCPRG00005014027) #36 Cryptodira ANCESTRAL SPECIES 5 ENSGT00940000153147 #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000175090 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b #34 Testudinoidea DUPLICATION Testudinoidea ANCESTRAL SPECIES 11 ENSGT00940000153147 #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000175090 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 Emydidae ANCESTRAL SPECIES 4 ENSGT00940000153147 #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000175090 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 painted turtle MODERN SPECIES 2363 MTX2 (ENSCPBG00000003480) #10 HOXD1 (ENSCPBG00000003489) #11 HOXD3 (ENSCPBG00000003500) #12 HOXD4 (ENSCPBG00000003507) #13 HOXD8 (ENSCPBG00000003524) #14 ENSCPBG00000003539 HOXD10 (ENSCPBG00000003567) #15 HOXD11 (ENSCPBG00000003578) #16 HOXD12 (ENSCPBG00000003590) #17 HOXD13 (ENSCPBG00000003603) EVX2 (ENSCPBG00000003612) #18 LNPK (ENSCPBG00000003649) #19 ENSCPBG00000003699 ATP5MC3 (ENSCPBG00000003721) #20 ATF2 (ENSCPBG00000003739) #21 ENSCPBG00000003769 #22 CHRNA1 (ENSCPBG00000003798) #23 WIPF1 (ENSCPBG00000003821) #24 GPR155 (ENSCPBG00000003847) #25 SCRN3 (ENSCPBG00000003876) #26 CIR1 (ENSCPBG00000003892) #27 SP9 (ENSCPBG00000003905) #28 OLA1 (ENSCPBG00000003917) #29 SP3 (ENSCPBG00000003941) #30 CDCA7 (ENSCPBG00000003973) #31 ENSCPBG00000003990 MAP3K20 (ENSCPBG00000004016) #32 RAPGEF4 (ENSCPBG00000004046) #33 ENSCPBG00000004114 PDK1 (ENSCPBG00000004159) #34 ITGA6 (ENSCPBG00000004218) #35 Three-toed box turtle MODERN SPECIES 25 HNRNPA3 (ENSTMTG00000016553) #9 MTX2 (ENSTMTG00000016539) #10 HOXD1 (ENSTMTG00000016527) #11 HOXD3 (ENSTMTG00000016516) #12 HOXD4 (ENSTMTG00000016507) #13 HOXD8 (ENSTMTG00000016482) #14 HOXD9 (ENSTMTG00000016450) HOXD10 (ENSTMTG00000016440) #15 HOXD11 (ENSTMTG00000016420) #16 HOXD12 (ENSTMTG00000016406) #17 HOXD13 (ENSTMTG00000016398) EVX2 (ENSTMTG00000016382) #18 LNPK (ENSTMTG00000016336) #19 ATP5MC3 (ENSTMTG00000016312) #20 ATF2 (ENSTMTG00000016268) #21 CHN1 (ENSTMTG00000016233) #22 CHRNA1 (ENSTMTG00000016015) #23 WIPF1 (ENSTMTG00000015938) #24 GPR155 (ENSTMTG00000015892) #25 SCRN3 (ENSTMTG00000015872) #26 CIR1 (ENSTMTG00000015849) #27 SP9 (ENSTMTG00000015838) #28 OLA1 (ENSTMTG00000015817) #29 SP3 (ENSTMTG00000015802) #30 CDCA7 (ENSTMTG00000015773) #31 MAP3K20 (ENSTMTG00000015679) #32 RAPGEF4 (ENSTMTG00000015604) #33 ENSTMTG00000015580 PDK1 (ENSTMTG00000015557) #34 ITGA6 (ENSTMTG00000015475) #35 DLX2 (ENSTMTG00000015446) #36 Testudinidae ANCESTRAL SPECIES 8 ENSGT00950000182892.a.a.b #8 ENSGT00940000153147 #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 Abingdon island giant tortoise MODERN SPECIES 1035 MTX2 (ENSCABG00000005448) #10 HOXD1 (ENSCABG00000005451) #11 HOXD3 (ENSCABG00000005452) #12 HOXD4 (ENSCABG00000005454) #13 HOXD8 (ENSCABG00000005456) #14 ENSCABG00000005458 HOXD10 (ENSCABG00000005460) #15 HOXD11 (ENSCABG00000005462) #16 HOXD12 (ENSCABG00000005463) #17 HOXD13 (ENSCABG00000005464) EVX2 (ENSCABG00000005465) #18 LNPK (ENSCABG00000005471) #19 ATP5MC3 (ENSCABG00000005827) #20 ATF2 (ENSCABG00000005829) #21 ENSCABG00000005833 CHN1 (ENSCABG00000005836) #22 CHRNA1 (ENSCABG00000005846) #23 WIPF1 (ENSCABG00000005855) #24 GPR155 (ENSCABG00000005860) #25 SCRN3 (ENSCABG00000005868) #26 CIR1 (ENSCABG00000005871) #27 SP9 (ENSCABG00000005873) #28 OLA1 (ENSCABG00000005875) #29 SP3 (ENSCABG00000005879) #30 CDCA7 (ENSCABG00000005887) #31 MAP3K20 (ENSCABG00000005938) #32 RAPGEF4 (ENSCABG00000005944) #33 ENSCABG00000005948 ENSCABG00000005949 Goode s thornscrub tortoise MODERN SPECIES 2 HOXD1 (ENSGEVG00005009340) #11 HOXD3 (ENSGEVG00005009410) #12 HOXD4 (ENSGEVG00005009454) #13 HOXD8 (ENSGEVG00005009500) #14 ENSGEVG00005009551 HOXD10 (ENSGEVG00005009665) #15 HOXD11 (ENSGEVG00005009700) #16 HOXD12 (ENSGEVG00005009748) #17 HOXD13 (ENSGEVG00005009780) EVX2 (ENSGEVG00005009804) #18 LNPK (ENSGEVG00005009864) #19 ENSGEVG00005009994 #20 ATF2 (ENSGEVG00005010051) #21 ENSGEVG00005010081 #22 ENSGEVG00005010115 ENSGEVG00005010137 #22 CHRNA1 (ENSGEVG00005010229) #23 WIPF1 (ENSGEVG00005010455) #24 GPR155 (ENSGEVG00005010493) #25 SCRN3 (ENSGEVG00005010545) #26 CIR1 (ENSGEVG00005010578) #27 SP9 (ENSGEVG00005010627) #28 OLA1 (ENSGEVG00005010691) #29 SP3 (ENSGEVG00005010730) #30 ENSGEVG00005010772 CDCA7 (ENSGEVG00005010835) #31 MAP3K20 (ENSGEVG00005011059) #32 RAPGEF4 (ENSGEVG00005011163) #33 ENSGEVG00005011398 ENSGEVG00005011437 PDK1 (ENSGEVG00005011514) #34 Testudinoidea ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.a.b #22 Emydidae ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.a.b #22 painted turtle MODERN SPECIES 1187 ENSCPBG00000021932 #22 ENSCPBG00000021933 PRKRA (ENSCPBG00000021934) Testudinidae ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.a.b #22 Goode s thornscrub tortoise MODERN SPECIES 2 HNRNPA3 (ENSGEVG00005020097) #9 MTX2 (ENSGEVG00005020106) #10 HOXD1 (ENSGEVG00005009340) #11 HOXD3 (ENSGEVG00005009410) #12 HOXD4 (ENSGEVG00005009454) #13 HOXD8 (ENSGEVG00005009500) #14 ENSGEVG00005009551 HOXD10 (ENSGEVG00005009665) #15 HOXD11 (ENSGEVG00005009700) #16 HOXD12 (ENSGEVG00005009748) #17 HOXD13 (ENSGEVG00005009780) EVX2 (ENSGEVG00005009804) #18 LNPK (ENSGEVG00005009864) #19 ENSGEVG00005009994 #20 ATF2 (ENSGEVG00005010051) #21 ENSGEVG00005010081 #22 ENSGEVG00005010115 ENSGEVG00005010137 #22 CHRNA1 (ENSGEVG00005010229) #23 WIPF1 (ENSGEVG00005010455) #24 GPR155 (ENSGEVG00005010493) #25 SCRN3 (ENSGEVG00005010545) #26 CIR1 (ENSGEVG00005010578) #27 SP9 (ENSGEVG00005010627) #28 OLA1 (ENSGEVG00005010691) #29 SP3 (ENSGEVG00005010730) #30 ENSGEVG00005010772 CDCA7 (ENSGEVG00005010835) #31 MAP3K20 (ENSGEVG00005011059) #32 RAPGEF4 (ENSGEVG00005011163) #33 ENSGEVG00005011398 Chinese turtle MODERN SPECIES 780 ENSPSIG00000001493 HNRNPA3 (ENSPSIG00000003011) #9 ENSPSIG00000001503 MTX2 (ENSPSIG00000003052) #10 HOXD1 (ENSPSIG00000003058) #11 HOXD3 (ENSPSIG00000003067) #12 HOXD4 (ENSPSIG00000003079) #13 HOXD10 (ENSPSIG00000003088) #15 HOXD11 (ENSPSIG00000003098) #16 HOXD12 (ENSPSIG00000003112) #17 HOXD13 (ENSPSIG00000003141) EVX2 (ENSPSIG00000003143) #18 LNPK (ENSPSIG00000003146) #19 ATP5MC3 (ENSPSIG00000003200) #20 ATF2 (ENSPSIG00000003225) #21 CHN1 (ENSPSIG00000003287) #22 CHRNA1 (ENSPSIG00000003348) #23 ENSPSIG00000001511 WIPF1 (ENSPSIG00000006271) #24 DBF4 (ENSPSIG00000006340) ENSPSIG00000001520 SLC25A40 (ENSPSIG00000006687) RUNDC3B (ENSPSIG00000006825) ENSPSIG00000007351 ENSPSIG00000008403 CROT (ENSPSIG00000008518) ACBD7 (ENSPSIG00000009875) RPP38 (ENSPSIG00000001527) NMT2 (ENSPSIG00000009935) FAM171A1 (ENSPSIG00000010577) ITGA8 (ENSPSIG00000010694) Lepidosauria ANCESTRAL SPECIES 7 ENSGT00940000153147 #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000154076.B.b ENSGT00940000155436 #31 ENSGT00940000175090 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b #34 Episquamata ANCESTRAL SPECIES ENSGT00940000153147 #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000154076.B.b ENSGT00940000155436 #31 ENSGT00940000175090 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b #34 Laterata ANCESTRAL SPECIES 30 ENSGT00940000153147 #9 ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000154076.B.b ENSGT00940000155436 #31 ENSGT00940000175090 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b #34 Common wall lizard MODERN SPECIES HNRNPA3 (ENSPMRG00000004153) #9 MTX2 (ENSPMRG00000004174) #10 HOXD1 (ENSPMRG00000004218) #11 HOXD3 (ENSPMRG00000004224) #12 HOXD4 (ENSPMRG00000004227) #13 HOXD8 (ENSPMRG00000004233) #14 HOXD10 (ENSPMRG00000004241) #15 HOXD11 (ENSPMRG00000004246) #16 HOXD12 (ENSPMRG00000004249) #17 HOXD13 (ENSPMRG00000004253) EVX2 (ENSPMRG00000004255) #18 LNPK (ENSPMRG00000004264) #19 ENSPMRG00000004309 ENSPMRG00000004311 #20 ATF2 (ENSPMRG00000004321) #21 CHN1 (ENSPMRG00000004341) #22 CHRNA1 (ENSPMRG00000000100) #23 WIPF1 (ENSPMRG00000000116) #24 GPR155 (ENSPMRG00000000135) #25 SCRN3 (ENSPMRG00000000165) #26 CIR1 (ENSPMRG00000000186) #27 SP9 (ENSPMRG00000000219) #28 OLA1 (ENSPMRG00000000249) #29 SP3 (ENSPMRG00000000292) #30 ENSPMRG00000000324 ENSPMRG00000000349 ENSPMRG00000000381 CDCA7 (ENSPMRG00000000416) #31 ENSPMRG00000000437 MAP3K20 (ENSPMRG00000000520) #32 RAPGEF4 (ENSPMRG00000000688) #33 Argentine black and white tegu MODERN SPECIES 18 ENSSMRG00000018224 MTX2 (ENSSMRG00000018218) #10 HOXD1 (ENSSMRG00000018217) #11 HOXD4 (ENSSMRG00000018216) #13 HOXD3 (ENSSMRG00000018215) #12 HOXD8 (ENSSMRG00000018213) #14 HOXD9 (ENSSMRG00000018212) HOXD10 (ENSSMRG00000018211) #15 HOXD11 (ENSSMRG00000018210) #16 HOXD12 (ENSSMRG00000018209) #17 HOXD13 (ENSSMRG00000018208) EVX2 (ENSSMRG00000018207) #18 LNPK (ENSSMRG00000018206) #19 ENSSMRG00000018204 #20 ATF2 (ENSSMRG00000018203) #21 CHN1 (ENSSMRG00000018201) #22 CHRNA1 (ENSSMRG00000018200) #23 WIPF1 (ENSSMRG00000018198) #24 GPR155 (ENSSMRG00000018197) #25 SCRN3 (ENSSMRG00000018196) #26 CIR1 (ENSSMRG00000018195) #27 SP9 (ENSSMRG00000018194) #28 ENSSMRG00000018193 OLA1 (ENSSMRG00000018191) #29 SP3 (ENSSMRG00000018190) #30 ENSSMRG00000018104 CDCA7 (ENSSMRG00000018098) #31 MAP3K20 (ENSSMRG00000018095) #32 RAPGEF4 (ENSSMRG00000018086) #33 Toxicofera DUPLICATION Toxicofera ANCESTRAL SPECIES 10 ENSGT00940000154808.a.a ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a.c #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 Elapidae ANCESTRAL SPECIES ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a.c #22 ENSGT00940000156851 #23 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00940000160029 #37 Indian cobra MODERN SPECIES ENSNNAG00000000087 MTX2 (ENSNNAG00000000088) #10 ENSNNAG00000000090 HOXD1 (ENSNNAG00000000092) #11 HOXD3 (ENSNNAG00000000093) #12 HOXD4 (ENSNNAG00000000094) #13 HOXD8 (ENSNNAG00000000096) #14 HOXD9 (ENSNNAG00000000098) HOXD10 (ENSNNAG00000000100) #15 HOXD11 (ENSNNAG00000000101) #16 HOXD13 (ENSNNAG00000000102) EVX2 (ENSNNAG00000000104) #18 LNPK (ENSNNAG00000000108) #19 ATP5MC3 (ENSNNAG00000000110) #20 ATF2 (ENSNNAG00000000112) #21 ENSNNAG00000000114 #22 ENSNNAG00000000117 ENSNNAG00000000119 ENSNNAG00000000121 #22 CHRNA1 (ENSNNAG00000000125) #23 ENSNNAG00000000127 GPR155 (ENSNNAG00000000128) #25 SCRN3 (ENSNNAG00000000130) #26 CIR1 (ENSNNAG00000000133) #27 SP9 (ENSNNAG00000000135) #28 OLA1 (ENSNNAG00000000137) #29 SP3 (ENSNNAG00000000138) #30 CDCA7 (ENSNNAG00000000139) #31 MAP3K20 (ENSNNAG00000000140) #32 RAPGEF4 (ENSNNAG00000000144) #33 ENSNNAG00000000147 Elapidae_a ANCESTRAL SPECIES 5 ENSGT00940000154808.a.a ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a.lc #20 ENSGT00940000156582 #21 ENSGT01000000218334 ENSGT01030000234635.a.b.a.b.b.a.a.c #22 ENSGT00940000156851 #23 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00940000160029 #37 Blue-lipped sea krait MODERN SPECIES 4226 ENSLLTG00000002358 ENSLLTG00000002360 #22 Acanthophiinae ANCESTRAL SPECIES 7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a.lc #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a.c #22 ENSGT00940000156851 #23 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #36 ENSGT00940000160029 #37 Eastern brown snake MODERN SPECIES 7 AGPS (ENSPTXG00000003592) #7 NFE2L2 (ENSPTXG00000003594) #8 ENSPTXG00000003601 MTX2 (ENSPTXG00000003605) #10 HOXD1 (ENSPTXG00000003611) #11 HOXD3 (ENSPTXG00000003613) #12 HOXD4 (ENSPTXG00000003615) #13 HOXD8 (ENSPTXG00000003619) #14 HOXD9 (ENSPTXG00000003620) HOXD10 (ENSPTXG00000003623) #15 HOXD13 (ENSPTXG00000000024) EVX2 (ENSPTXG00000000029) #18 LNPK (ENSPTXG00000000058) #19 ENSPTXG00000000082 #20 ATF2 (ENSPTXG00000000105) #21 CHN1 (ENSPTXG00000000161) #22 CHRNA1 (ENSPTXG00000000220) #23 ENSPTXG00000000245 GPR155 (ENSPTXG00000000262) #25 SCRN3 (ENSPTXG00000000283) #26 CIR1 (ENSPTXG00000000304) #27 SP9 (ENSPTXG00000000321) #28 OLA1 (ENSPTXG00000000329) #29 SP3 (ENSPTXG00000000354) #30 CDCA7 (ENSPTXG00000000367) #31 MAP3K20 (ENSPTXG00000000382) #32 RAPGEF4 (ENSPTXG00000000433) #33 ENSPTXG00000000542 PDK1 (ENSPTXG00000000578) #34 ITGA6 (ENSPTXG00000000605) #35 DLX2 (ENSPTXG00000000658) #36 Mainland tiger snake MODERN SPECIES 93 MTX2 (ENSNSUG00000011211) #10 HOXD1 (ENSNSUG00000011213) #11 HOXD3 (ENSNSUG00000011215) #12 HOXD4 (ENSNSUG00000011217) #13 HOXD8 (ENSNSUG00000011219) #14 HOXD9 (ENSNSUG00000011220) HOXD10 (ENSNSUG00000011221) #15 HOXD11 (ENSNSUG00000011224) #16 HOXD13 (ENSNSUG00000011225) EVX2 (ENSNSUG00000011227) #18 LNPK (ENSNSUG00000011230) #19 ENSNSUG00000011445 #20 ATF2 (ENSNSUG00000011447) #21 CHN1 (ENSNSUG00000011448) #22 CHRNA1 (ENSNSUG00000011450) #23 ENSNSUG00000011452 GPR155 (ENSNSUG00000011455) #25 ENSNSUG00000011458 #26 CIR1 (ENSNSUG00000011459) #27 SP9 (ENSNSUG00000011499) #28 OLA1 (ENSNSUG00000011501) #29 SP3 (ENSNSUG00000011503) #30 CDCA7 (ENSNSUG00000011545) #31 MAP3K20 (ENSNSUG00000011551) #32 RAPGEF4 (ENSNSUG00000011574) #33 ENSNSUG00000011582 PDK1 (ENSNSUG00000011584) #34 ITGA6 (ENSNSUG00000011670) #35 DLX2 (ENSNSUG00000011797) #36 Toxicofera ANCESTRAL SPECIES 284 ENSGT01010000228762 ENSGT01030000234635.a.b.a.b.b.a.a.d #22 Elapidae ANCESTRAL SPECIES 259 ENSGT01010000228762 ENSGT01030000234635.a.b.a.b.b.a.a.d #22 Indian cobra MODERN SPECIES HOXD1 (ENSNNAG00000000092) #11 HOXD3 (ENSNNAG00000000093) #12 HOXD4 (ENSNNAG00000000094) #13 HOXD8 (ENSNNAG00000000096) #14 HOXD9 (ENSNNAG00000000098) HOXD10 (ENSNNAG00000000100) #15 HOXD11 (ENSNNAG00000000101) #16 HOXD13 (ENSNNAG00000000102) EVX2 (ENSNNAG00000000104) #18 LNPK (ENSNNAG00000000108) #19 ATP5MC3 (ENSNNAG00000000110) #20 ATF2 (ENSNNAG00000000112) #21 ENSNNAG00000000114 #22 ENSNNAG00000000117 ENSNNAG00000000119 ENSNNAG00000000121 #22 CHRNA1 (ENSNNAG00000000125) #23 ENSNNAG00000000127 GPR155 (ENSNNAG00000000128) #25 SCRN3 (ENSNNAG00000000130) #26 CIR1 (ENSNNAG00000000133) #27 SP9 (ENSNNAG00000000135) #28 OLA1 (ENSNNAG00000000137) #29 SP3 (ENSNNAG00000000138) #30 CDCA7 (ENSNNAG00000000139) #31 MAP3K20 (ENSNNAG00000000140) #32 RAPGEF4 (ENSNNAG00000000144) #33 ENSNNAG00000000147 PDK1 (ENSNNAG00000000150) #34 ITGA6 (ENSNNAG00000000157) #35 ENSNNAG00000000187 Elapidae_a ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.a.d #22 Blue-lipped sea krait MODERN SPECIES 5152 ENSLLTG00000009172 #22 Lizard MODERN SPECIES 990 ENSACAG00000038540 ATP5MC3 (ENSACAG00000011295) #20 ATF2 (ENSACAG00000011326) #21 CHN1 (ENSACAG00000009221) #22 ENSACAG00000037465 CHRNA1 (ENSACAG00000005293) #23 WIPF1 (ENSACAG00000005402) #24 GPR155 (ENSACAG00000005449) #25 SCRN3 (ENSACAG00000005474) #26 CIR1 (ENSACAG00000044316) #27 SP9 (ENSACAG00000005550) #28 tuatara MODERN SPECIES 1141 ENSSPUG00000002686 #20 ATF2 (ENSSPUG00000002668) #21 CHN1 (ENSSPUG00000002634) #22 CHRNA1 (ENSSPUG00000002611) #23 WIPF1 (ENSSPUG00000002581) #24 GPR155 (ENSSPUG00000002480) #25 SCRN3 (ENSSPUG00000002468) #26 CIR1 (ENSSPUG00000002452) #27 SP9 (ENSSPUG00000002442) #28 OLA1 (ENSSPUG00000002409) #29 SP3 (ENSSPUG00000002382) #30 ENSSPUG00000002171 ENSSPUG00000002114 #31 ENSSPUG00000002104 ENSSPUG00000002098 MAP3K20 (ENSSPUG00000002092) #32 RAPGEF4 (ENSSPUG00000001476) #33 Anura ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.a #22 Leishan spiny toad MODERN SPECIES 10 MTX2 (ENSLLEG00000028232) #10 HOXD1 (ENSLLEG00000028203) #11 HOXD3 (ENSLLEG00000028179) #12 HOXD4 (ENSLLEG00000028161) #13 ENSLLEG00000028121 HOXD9 (ENSLLEG00000028108) HOXD10 (ENSLLEG00000028079) #15 HOXD11 (ENSLLEG00000028065) #16 HOXD13 (ENSLLEG00000028045) EVX2 (ENSLLEG00000028026) #18 LNPK (ENSLLEG00000027978) #19 ATP5MC3 (ENSLLEG00000027926) #20 ENSLLEG00000027903 ATF2 (ENSLLEG00000027780) #21 ENSLLEG00000027748 CHN1 (ENSLLEG00000027124) #22 ENSLLEG00000026724 ENSLLEG00000026332 #23 ENSLLEG00000025568 #23 WIPF1 (ENSLLEG00000025429) #24 ENSLLEG00000025402 GPR155 (ENSLLEG00000025094) #25 ENSLLEG00000024926 #26 CIR1 (ENSLLEG00000024815) #27 SP9 (ENSLLEG00000024755) #28 OLA1 (ENSLLEG00000024413) #29 SP3 (ENSLLEG00000024312) #30 ENSLLEG00000022292 CDCA7 (ENSLLEG00000021778) #31 ENSLLEG00000021098 ENSLLEG00000019579 #33 Cyclostomata ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.a #22 Hagfish MODERN SPECIES 898 ENSEBUG00000007854 ENSEBUG00000016480 ENSEBUG00000006500 ENSEBUG00000010646 #22 clstn1 (ENSEBUG00000005642) pik3cd (ENSEBUG00000013272) ENSEBUG00000007792 ENSEBUG00000011269 ENSEBUG00000015372 ENSEBUG00000016815 ENSEBUG00000005302 ENSEBUG00000000541 ENSEBUG00000001729 Chordata ANCESTRAL SPECIES 117 ENSGT00940000154553 ENSGT01030000234635.a.b.a.b.b.a.b ##22 Ciona ANCESTRAL SPECIES 1247 ENSGT00940000154553 ENSGT01030000234635.a.b.a.b.b.a.b ##22 Ciona intestinalis MODERN SPECIES 21 ENSCING00000021845 ENSCING00000023216 ##22 ENSCING00000021861 Ciona savignyi MODERN SPECIES 183 ENSCSAVG00000002013 ENSCSAVG00000002017 ENSCSAVG00000002021 ##22 ENSCSAVG00000002023 ENSCSAVG00000002025 ENSCSAVG00000002028 ENSCSAVG00000002034 ENSCSAVG00000002045 ENSCSAVG00000002057 ENSCSAVG00000002159 ENSCSAVG00000002653 ENSCSAVG00000002737 ENSCSAVG00000002758 ENSCSAVG00000002761 ENSCSAVG00000002765 ENSCSAVG00000002769 ENSCSAVG00000002789 ENSCSAVG00000002804 Vertebrata ANCESTRAL SPECIES 997 ENSGT00940000154553.a.a ENSGT01030000234635.a.b.a.b.b.a.b ##22 Cyclostomata ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.b ##22 Lamprey MODERN SPECIES 4382 ENSPMAG00000008104 ##22 Gnathostomata ANCESTRAL SPECIES 1107 ENSGT00970000193421.A ENSGT00940000154553.a.a ENSGT01030000234635.a.b.a.b.b.a.b ##22 Elephant shark MODERN SPECIES 1499 hoxd4a (ENSCMIG00000012892) #13 hoxd3a (ENSCMIG00000012890) #12 ENSCMIG00000012888 hoxd8 (ENSCMIG00000012886) ENSCMIG00000012881 hoxd10a (ENSCMIG00000012878) #15 hoxd11a (ENSCMIG00000012876) #16 hoxd12a (ENSCMIG00000012873) #17 HOXD13 (ENSCMIG00000012869) ENSCMIG00000012868 evx2 (ENSCMIG00000012866) #18 lnpk (ENSCMIG00000012861) #19 ENSCMIG00000012857 ATF2 (ENSCMIG00000012818) #21 ENSCMIG00000012801 ENSCMIG00000012784 ##22 chrna1 (ENSCMIG00000012709) #23 wipf1a (ENSCMIG00000012690) #24 GPR155 (ENSCMIG00000012683) #25 scrn3 (ENSCMIG00000012676) #26 CIR1 (ENSCMIG00000012674) #27 sp9 (ENSCMIG00000012670) #28 ola1 (ENSCMIG00000012650) #29 SP3 (ENSCMIG00000012643) #30 ENSCMIG00000012639 ENSCMIG00000012635 ENSCMIG00000012631 ENSCMIG00000012629 ENSCMIG00000012627 ENSCMIG00000012621 cdca7a (ENSCMIG00000012616) #31 Euteleostomi ANCESTRAL SPECIES 673 ENSGT00970000193421.A ENSGT00940000154553.a.a ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 Actinopterygii ANCESTRAL SPECIES 437 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT00940000154553.a.a ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 Neopterygii ANCESTRAL SPECIES 167 ENSGT00940000156119 ENSGT01080000257562 ENSGT00530000063461.B ENSGT00940000160230 ENSGT00390000017359 ENSGT00940000155666.d ENSGT00390000018039 ENSGT00950000182980.a.b.a.b.a.a ENSGT01050000244902.b.d ENSGT00940000164695 ENSGT00940000160599 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT00940000154553.a.a ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b Osteoglossocephalai ANCESTRAL SPECIES 82 ENSGT00940000160230 ENSGT00390000017359 ENSGT00940000156484.a ENSGT00940000157454 ENSGT00940000155666.d ENSGT00390000018039 ENSGT00940000162930 ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT00940000154553.a.a ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00980000202353 ENSGT00940000155354.a ENSGT00940000176207 ENSGT00940000153062.B ENSGT00940000159197 ENSGT01030000234556.b.b.a.b ENSGT01030000234556.a.a.a.b Clupeocephala ANCESTRAL SPECIES 117 ENSGT00940000166238.a ENSGT00940000156119 ENSGT00530000063461.B ENSGT00940000160230 ENSGT00390000017359 ENSGT00940000155666.d ENSGT00390000018039 ENSGT00950000182980.a.b.a.b.a.a.e.b.a.a ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00940000162008 ENSGT00940000154390.B ENSGT00390000009562 ENSGT00940000155354.a ENSGT00940000176207 ENSGT00940000153062.B ENSGT00940000159197 Euteleosteomorpha ANCESTRAL SPECIES 55 ENSGT00530000063461.B ENSGT00940000160230 ENSGT00390000017359 ENSGT00940000156484.a ENSGT00940000157454 ENSGT00940000155666.d ENSGT00390000018039 ENSGT00940000162930 ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00940000162008 ENSGT00940000154390.B ENSGT00390000009562 ENSGT00940000155354.a ENSGT00940000176207 ENSGT00940000153062.B ENSGT01100000263714 Protacanthopterygii ANCESTRAL SPECIES 7 ENSGT00530000063461.B ENSGT00940000160230 ENSGT00390000017359 ENSGT00940000156484.a ENSGT00940000157454 ENSGT00940000155666.d ENSGT00390000018039 ENSGT00950000182980.a.b.b.a.b.b.c ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399.c.b ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00940000162008.e.a ENSGT00940000154390.B ENSGT00980000202353 ENSGT00940000155354.a ENSGT00960000187503 ENSGT01030000234872 ENSGT00940000153062.B Salmoninae DUPLICATION Salmoninae ANCESTRAL SPECIES 26 ENSGT00940000160230.m.b ENSGT00390000017359.k ENSGT00940000156484.a.c ENSGT00940000157454.rc.b ENSGT00940000155666.d.a ENSGT00390000018039.p ENSGT00950000182980.a.b.b.a.b.b.c.b ENSGT01050000244902.b.d.e ENSGT00940000167255 ENSGT00940000164695.a.g ENSGT00940000167260.c ENSGT00940000165900.d ENSGT00940000159399.c.b.b ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b.b ##22 ENSGT01030000234635.a.b.a.b.b.a.b.a ##22 ENSGT00940000161295.n.a ENSGT00390000012863.c ENSGT00940000160655.w.b ENSGT00940000159485.j ENSGT00390000017583.e ENSGT00950000183095.a.b.a.b.a.q ENSGT00950000183024.a.b.b.i ENSGT01100000263537.b.b.c.b.g ENSGT00940000162008.e.a.b ENSGT00980000202353 ENSGT00940000155354.a.d ENSGT00940000155354.a.c ENSGT00960000187503.a ENSGT00940000153062.B ENSGT00940000159197.g.a.b Salmoninae_a ANCESTRAL SPECIES 3 ENSGT00940000156119 ENSGT00530000063461.B.b ENSGT00940000160230.m.a.b ENSGT00390000017359.l ENSGT00940000156484.a.d ENSGT00940000157454.rc.a ENSGT00940000155666.d.b ENSGT00390000018039.o ENSGT00950000182980.a.b.b.a.b.b.c.a ENSGT01050000244902.b.d.f ENSGT00940000164695.a.h ENSGT00940000167260.d ENSGT00940000165900.c ENSGT00940000159399.c.b.a ENSGT00970000193421.A.bb ENSGT01030000234635.a.b.a.b.b.a.b.a ##22 ENSGT00940000161295.n.a ENSGT00390000012863.d ENSGT00940000160655.w.a ENSGT00940000159485.i ENSGT00390000017583.f ENSGT00950000183095.a.b.a.b.a.r ENSGT00950000183024.a.b.b.j ENSGT01100000263537.b.b.c.b.h ENSGT00940000162008.e.a.a ENSGT00940000155354.a.d ENSGT01030000234872.b.a ENSGT01030000234872.a ENSGT00940000159197.g.a.a ENSGT00510000054245.d ENSGT00940000155207.a.a.c Salmo ANCESTRAL SPECIES 22 ENSGT00940000156119 ENSGT00530000063461.B.b ENSGT00940000160230.m.a.b ENSGT00390000017359.l ENSGT00940000156484.a.d ENSGT00940000157454.rc.a ENSGT00940000155666.d.b ENSGT00390000018039.o ENSGT00950000182980.a.b.b.a.b.b.c.b ENSGT01050000244902.b.d.f ENSGT00940000164695.a.h ENSGT00940000167260.d ENSGT00940000165900.c ENSGT00940000159399.c.b.a ENSGT00970000193421.A.bb ENSGT01030000234635.a.b.a.b.b.a.b.a ##22 ENSGT00940000161295.n.a.a ENSGT00940000161295.n.a.b ENSGT00390000012863.d ENSGT00940000160655.w.a ENSGT00940000159485.i ENSGT00390000017583.f ENSGT00950000183095.a.b.a.b.a.r ENSGT00950000183024.a.b.b.j ENSGT01100000263537.b.b.c.b.h ENSGT00940000162008.e.a.a ENSGT00980000202353 ENSGT00940000155354.a.d ENSGT00960000187503.b ENSGT01030000234872.b.a ENSGT00940000159197.g.a.a River trout MODERN SPECIES 4 clptm1 (ENSSTUG00000022422) ENSSTUG00000022496 mrpl28 (ENSSTUG00000022510) ENSSTUG00000022525 ppp1r37 (ENSSTUG00000022547) bmp16 (ENSSTUG00000022832) gemin7 (ENSSTUG00000022970) ENSSTUG00000022993 ENSSTUG00000022999 PTGIR (ENSSTUG00000023110) ppm1na (ENSSTUG00000023117) rtn2a (ENSSTUG00000023138) rhoub (ENSSTUG00000001068) rab4b (ENSSTUG00000001302) ap2s1 (ENSSTUG00000001378) ARHGAP35 (ENSSTUG00000001456) ##22 NPAS1 (ENSSTUG00000001462) tmem160 (ENSSTUG00000001468) ENSSTUG00000001486 slc1a5 (ENSSTUG00000001501) fkrp (ENSSTUG00000001521) STRN4 (ENSSTUG00000001534) PRKD2 (ENSSTUG00000001609) gpr184 (ENSSTUG00000001949) si:dkey-202l22.3 (ENSSTUG00000001958) DSCAML1 (ENSSTUG00000002008) ENSSTUG00000002157 ENSSTUG00000002167 ENSSTUG00000002188 TMPRSS13 (ENSSTUG00000002226) il10ra (ENSSTUG00000002238) Atlantic salmon MODERN SPECIES 28 tbcb (ENSSSAG00000005371) clptm1 (ENSSSAG00000005391) relb (ENSSSAG00000052551) mrpl28 (ENSSSAG00000052408) ppp1r37 (ENSSSAG00000050748) ENSSSAG00000101396 gemin7 (ENSSSAG00000050696) ptgir (ENSSSAG00000050308) calm2a (ENSSSAG00000100630) ENSSSAG00000098660 ppm1na (ENSSSAG00000114761) rtn2 (ENSSSAG00000050238) rhoub (ENSSSAG00000093611) rab4b (ENSSSAG00000112839) AP2S1 (ENSSSAG00000049632) ARHGAP35 (ENSSSAG00000088356) ##22 NPAS1 (ENSSSAG00000052649) tmem160 (ENSSSAG00000105319) egln2 (ENSSSAG00000052632) slc1a5 (ENSSSAG00000106214) fkrp (ENSSSAG00000112023) STRN4 (ENSSSAG00000089805) ENSSSAG00000099064 PRKD2 (ENSSSAG00000002560) gpr184 (ENSSSAG00000090885) si:dkey-202l22.3 (ENSSSAG00000002189) ENSSSAG00000109627 ENSSSAG00000052680 ENSSSAG00000100830 il10ra (ENSSSAG00000086953) TMPRSS13 (ENSSSAG00000005506) Oncorhynchus ANCESTRAL SPECIES 14 ENSGT00940000166238.a.c ENSGT00940000156119 ENSGT00530000063461.B.b ENSGT00940000160230.m.a.b ENSGT00390000017359.l ENSGT00940000156484.a.d ENSGT00940000157454.rc.a ENSGT00940000155666.d.b ENSGT00950000182980.a.b.b.a.b.b.c.a ENSGT01050000244902.b.d.f ENSGT00940000164695.a.h ENSGT00940000167260.d ENSGT00940000165900.c ENSGT00940000159399.c.b.a ENSGT00970000193421.A.bb ENSGT01030000234635.a.b.a.b.b.a.b.a ##22 ENSGT00390000012863.d ENSGT00940000160655.w.a ENSGT00940000159485.i ENSGT00390000017583.f ENSGT00950000183095.a.b.a.b.a.r ENSGT00950000183024.a.b.b.j.a ENSGT01100000263537.b.b.c.b.h ENSGT00940000162008.e.a.a ENSGT00940000155354.a.d ENSGT01030000234872.a.a ENSGT00940000159197.g.a.a ENSGT00510000054245.d ENSGT00940000155207.a.a.c ENSGT01030000234556.b.b.a.a.c ENSGT01030000234556.b.a.b.a Oncorhynchus_a ANCESTRAL SPECIES 59 ENSGT00940000160230.m.a.a ENSGT00390000017359.k ENSGT00940000156484.a.c ENSGT00940000157454.rc.b ENSGT00940000155666.d.a ENSGT00390000018039.p ENSGT00950000182980.a.b.b.a.b.b.c.b ENSGT01050000244902.b.d.e ENSGT00940000167255 ENSGT00940000164695.a.g ENSGT00940000167260.c ENSGT00940000165900.d ENSGT00940000159399.c.b.b ENSGT00970000193421.A.cb ENSGT01030000234635.a.b.a.b.b.a.b.b ##22 ENSGT01030000234635.a.b.a.b.b.a.b.a ##22 ENSGT00940000161295.n.a ENSGT00390000012863.c ENSGT00940000160655.w.b ENSGT00940000159485.j ENSGT00390000017583.e ENSGT00950000183095.a.b.a.b.a.q ENSGT00950000183024.a.b.b.i ENSGT01100000263537.b.b.c.b.g ENSGT00940000162008.e.a.b ENSGT00980000202353 ENSGT00940000155354.a.c Chinook salmon MODERN SPECIES 5 ENSOTSG00005015313 ENSOTSG00005015314 mrpl28 (ENSOTSG00005015315) ENSOTSG00005015316 ppp1r37 (ENSOTSG00005015319) bmp16 (ENSOTSG00005015323) ENSOTSG00005015326 ENSOTSG00005015328 ENSOTSG00005015521 PTGIR (ENSOTSG00005015523) ppm1na (ENSOTSG00005015525) rtn2a (ENSOTSG00005015526) rhoub (ENSOTSG00005015528) rab4b (ENSOTSG00005015530) ap2s1 (ENSOTSG00005015531) ARHGAP35 (ENSOTSG00005015557) ##22 ENSOTSG00005015559 ENSOTSG00005015560 slc1a5 (ENSOTSG00005015561) fkrp (ENSOTSG00005015562) STRN4 (ENSOTSG00005015563) PRKD2 (ENSOTSG00005015564) gpr184 (ENSOTSG00005015569) ENSOTSG00005015570 si:dkey-202l22.3 (ENSOTSG00005015572) shox2 (ENSOTSG00005011738) DOCK10 (ENSOTSG00005011874) ENSOTSG00005012341 abcg1 (ENSOTSG00005012351) spcs2 (ENSOTSG00005014698) spcs2 (ENSOTSG00005014700) Rainbow trout MODERN SPECIES 16 mrpl28 (ENSOMYG00000029790) ENSOMYG00000029779 ENSOMYG00000029724 bmp16 (ENSOMYG00000029577) ENSOMYG00000057538 ENSOMYG00000074800 ENSOMYG00000029527 ENSOMYG00000029461 ppm1na (ENSOMYG00000029447) rtn2a (ENSOMYG00000029432) rhoub (ENSOMYG00000029397) ENSOMYG00000058174 ENSOMYG00000058206 rab4b (ENSOMYG00000029382) ap2s1 (ENSOMYG00000029325) ENSOMYG00000029220 ##22 ENSOMYG00000049025 NPAS1 (ENSOMYG00000029180) ENSOMYG00000056560 ENSOMYG00000029100 ENSOMYG00000061195 ENSOMYG00000059274 ENSOMYG00000057648 slc1a5 (ENSOMYG00000029048) fkrp (ENSOMYG00000029027) STRN4 (ENSOMYG00000028883) ENSOMYG00000057277 PRKD2 (ENSOMYG00000027792) gpr184 (ENSOMYG00000027612) si:dkey-202l22.3 (ENSOMYG00000027592) ENSOMYG00000068033 Huchen MODERN SPECIES 2231 TACR3 (ENSHHUG00000038256) ARHGAP35 (ENSHHUG00000038246) ##22 ENSHHUG00000038238 ENSHHUG00000038235 tmem160 (ENSHHUG00000038232) ENSHHUG00000038227 Salmoninae ANCESTRAL SPECIES 26 ENSGT00530000063461.B.a ENSGT00940000160230.m.b ENSGT00390000017359.k ENSGT00940000156484.a.c ENSGT00940000157454.rc.b ENSGT00940000155666.d.a ENSGT00390000018039.p ENSGT00950000182980.a.b.b.a.b.b.c.b ENSGT01050000244902.b.d.e ENSGT00940000167255 ENSGT00940000164695.a.g ENSGT00940000167260.c ENSGT00940000165900.d ENSGT00940000159399.c.b.b ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b.b ##22 ENSGT01030000234635.a.b.a.b.b.a.b.a ##22 ENSGT00940000161295.n.a ENSGT00390000012863.c ENSGT00940000160655.w.b ENSGT00940000159485.j ENSGT00390000017583.e ENSGT00950000183095.a.b.a.b.a.q ENSGT00950000183024.a.b.b.i ENSGT01100000263537.b.b.c.b.g ENSGT00940000162008.e.a.b ENSGT00980000202353 ENSGT00940000155354.a.d ENSGT00940000155354.a.c ENSGT00960000187503.a ENSGT00940000153062.B Salmoninae_a ANCESTRAL SPECIES 19 ENSGT00530000063461.B.a ENSGT00940000160230.m.a.a ENSGT00390000017359.k ENSGT00940000156484.a.c ENSGT00940000157454.rc.b ENSGT00940000155666.d.a ENSGT00390000018039.p ENSGT00950000182980.a.b.b.a.b.b.c.b ENSGT01050000244902.b.d.e ENSGT00940000167255 ENSGT00940000164695.a.g ENSGT00940000167260.c ENSGT00940000165900.d ENSGT00940000159399.c.b.b ENSGT00970000193421.A.cb ENSGT01030000234635.a.b.a.b.b.a.b.b ##22 ENSGT00940000161295.n.b ENSGT00940000161295.o ENSGT00390000012863.c ENSGT00940000160655.w.b ENSGT00940000159485.j ENSGT00390000017583.e ENSGT00950000183095.a.b.a.b.a.q ENSGT00950000183024.a.b.b.i ENSGT01100000263537.b.b.c.b.g ENSGT00940000162008.e.a.b ENSGT00980000202353 ENSGT00940000155354.a.c ENSGT00960000187503.a ENSGT00940000153062.B ENSGT00940000159197.g.a.b Salmo ANCESTRAL SPECIES 7 ENSGT00530000063461.B.a ENSGT00940000160230.m.b ENSGT00390000017359.k ENSGT00940000156484.a.c ENSGT00940000157454.rc.b ENSGT00940000155666.d.a ENSGT00390000018039.p ENSGT00940000164310 ENSGT01050000244902.b.d.e ENSGT00940000167255 ENSGT00940000164695.a.g ENSGT00940000167260.c ENSGT00940000165900.d ENSGT00940000159399.c.b.b ENSGT00970000193421.A.cb ENSGT01030000234635.a.b.a.b.b.a.b.b ##22 ENSGT00940000161295.n.b ENSGT00940000160655.w.b ENSGT00940000159485.j ENSGT00390000017583.e ENSGT00950000183095.a.b.a.b.a.q ENSGT00950000183024.a.b.b.i ENSGT01100000263537.b.b.c.b.g ENSGT00940000162008.e.a.b ENSGT00940000155354.a.c ENSGT00960000187503.a ENSGT00940000153062.B ENSGT00940000159197.g.a.b ENSGT00510000054245.c ENSGT00940000155207.a.a.d ENSGT01030000234556.b.b.a.a.d River trout MODERN SPECIES 18 clptm1 (ENSSTUG00000008777) ENSSTUG00000009239 mrpl28 (ENSSTUG00000009251) ENSSTUG00000009266 ppp1r37 (ENSSTUG00000009279) bmp16 (ENSSTUG00000009389) gemin7 (ENSSTUG00000009400) ENSSTUG00000009441 PTGIR (ENSSTUG00000009559) ENSSTUG00000009568 rtn2a (ENSSTUG00000009580) ppm1na (ENSSTUG00000009641) rhoub (ENSSTUG00000009647) rab4b (ENSSTUG00000009675) ap2s1 (ENSSTUG00000009713) ARHGAP35 (ENSSTUG00000009783) ##22 NPAS1 (ENSSTUG00000009791) ENSSTUG00000009822 slc1a5 (ENSSTUG00000009863) fkrp (ENSSTUG00000009882) STRN4 (ENSSTUG00000009897) PRKD2 (ENSSTUG00000010154) gpr184 (ENSSTUG00000011396) si:dkey-202l22.3 (ENSSTUG00000011401) DSCAML1 (ENSSTUG00000011503) ENSSTUG00000012302 ENSSTUG00000012323 ENSSTUG00000012339 TMPRSS13 (ENSSTUG00000012347) il10ra (ENSSTUG00000012379) ENSSTUG00000012395 Atlantic salmon MODERN SPECIES 12 ENSSSAG00000121301 ENSSSAG00000092258 RM28 (ENSSSAG00000120657) ENSSSAG00000119715 ppp1r37 (ENSSSAG00000120388) bmp16 (ENSSSAG00000108574) gemin7 (ENSSSAG00000099823) ENSSSAG00000097830 ENSSSAG00000005656 ENSSSAG00000096827 ENSSSAG00000083390 rtn2a (ENSSSAG00000108689) ppm1na (ENSSSAG00000094609) rhoub (ENSSSAG00000050214) rab4b (ENSSSAG00000049780) ARHGAP35 (ENSSSAG00000049601) ##22 ap2s1 (ENSSSAG00000083309) ENSSSAG00000094430 ENSSSAG00000118656 slc1a5 (ENSSSAG00000052580) fkrp (ENSSSAG00000099674) STRN4 (ENSSSAG00000109664) PRKD2 (ENSSSAG00000086083) ENSSSAG00000112964 gpr184 (ENSSSAG00000087508) si:dkey-202l22.3 (ENSSSAG00000086868) ENSSSAG00000103338 DSCAML1 (ENSSSAG00000093451) ENSSSAG00000101627 fxyd6 (ENSSSAG00000086766) TMPRSS13 (ENSSSAG00000099986) Oncorhynchus ANCESTRAL SPECIES 24 ENSGT00530000063461.B.a ENSGT00940000160230.m.a.a ENSGT00390000017359.k ENSGT00940000156484.a.c ENSGT00940000157454.rc.b ENSGT00940000155666.d.a ENSGT00390000018039.p ENSGT00950000182980.a.b.b.a.b.b.c.b ENSGT01050000244902.b.d.e ENSGT00940000167255 ENSGT00940000164695.a.g ENSGT00940000167260.c ENSGT00940000165900.d ENSGT00940000159399.c.b.b ENSGT00970000193421.A.cb ENSGT01030000234635.a.b.a.b.b.a.b.b ##22 ENSGT00940000161295.n.a ENSGT00390000012863.c ENSGT00940000160655.w.b ENSGT00940000159485.j ENSGT00390000017583.e ENSGT00950000183095.a.b.a.b.a.q ENSGT00950000183024.a.b.b.i ENSGT01100000263537.b.b.c.b.g ENSGT00940000162008.e.a.b ENSGT00980000202353 ENSGT00940000155354.a.c ENSGT00960000187503.b ENSGT01030000234872.b.b ENSGT00940000159197.g.a.b ENSGT00510000054245.c Rainbow trout MODERN SPECIES 19 ENSOMYG00000052183 ENSOMYG00000021944 mrpl28 (ENSOMYG00000021960) ENSOMYG00000021974 ppp1r37 (ENSOMYG00000022054) bmp16 (ENSOMYG00000022166) gemin7 (ENSOMYG00000022172) ENSOMYG00000022241 ENSOMYG00000022323 ENSOMYG00000022332 ppm1na (ENSOMYG00000022344) RTN2 (ENSOMYG00000022377) rhoub (ENSOMYG00000022411) rab4b (ENSOMYG00000022476) ap2s1 (ENSOMYG00000022579) ARHGAP35 (ENSOMYG00000022615) ##22 NPAS1 (ENSOMYG00000069164) ENSOMYG00000065488 tmem160 (ENSOMYG00000022620) ENSOMYG00000022630 slc1a5 (ENSOMYG00000022652) fkrp (ENSOMYG00000022673) STRN4 (ENSOMYG00000022684) PRKD2 (ENSOMYG00000022753) si:dkey-202l22.3 (ENSOMYG00000022774) ENSOMYG00000022837 ENSOMYG00000068572 ENSOMYG00000023032 ENSOMYG00000023056 ENSOMYG00000023094 il10ra (ENSOMYG00000023132) Oncorhynchus_a ANCESTRAL SPECIES 59 ENSGT00530000063461.B.a ENSGT00940000160230.m.a.a ENSGT00390000017359.k ENSGT00940000156484.a.c ENSGT00940000157454.rc.b ENSGT00940000155666.d.a ENSGT00390000018039.p ENSGT00950000182980.a.b.b.a.b.b.c.b ENSGT01050000244902.b.d.e ENSGT00940000167255 ENSGT00940000164695.a.g ENSGT00940000167260.c ENSGT00940000165900.d ENSGT00940000159399.c.b.b ENSGT00970000193421.A.cb ENSGT01030000234635.a.b.a.b.b.a.b.b ##22 ENSGT01030000234635.a.b.a.b.b.a.b.a ##22 ENSGT00940000161295.n.a ENSGT00390000012863.c ENSGT00940000160655.w.b ENSGT00940000159485.j ENSGT00390000017583.e ENSGT00950000183095.a.b.a.b.a.q ENSGT00950000183024.a.b.b.i ENSGT01100000263537.b.b.c.b.g ENSGT00940000162008.e.a.b ENSGT00980000202353 ENSGT00940000155354.a.c Coho salmon MODERN SPECIES 6 ENSOKIG00005010103 mrpl28 (ENSOKIG00005010118) ENSOKIG00005010132 ppp1r37 (ENSOKIG00005010148) bmp16 (ENSOKIG00005010205) gemin7 (ENSOKIG00005010213) ENSOKIG00005010216 ENSOKIG00005010225 PTGIR (ENSOKIG00005010261) ENSOKIG00005010262 ppm1na (ENSOKIG00005010273) rtn2a (ENSOKIG00005010286) rhoub (ENSOKIG00005010309) rab4b (ENSOKIG00005010321) ap2s1 (ENSOKIG00005010352) ARHGAP35 (ENSOKIG00005010433) ##22 NPAS1 (ENSOKIG00005010441) tmem160 (ENSOKIG00005010444) ENSOKIG00005010448 slc1a5 (ENSOKIG00005010455) fkrp (ENSOKIG00005010469) STRN4 (ENSOKIG00005010510) ENSOKIG00005011447 ENSOKIG00005011459 ENSOKIG00005011478 ENSOKIG00005011511 il10ra (ENSOKIG00005011550) ENSOKIG00005011597 scn4ba (ENSOKIG00005011649) SCN2B (ENSOKIG00005011668) zgc:172282 (ENSOKIG00005011687) Huchen MODERN SPECIES 31 ENSHHUG00000003796 mrpl28 (ENSHHUG00000003803) ENSHHUG00000003816 ppp1r37 (ENSHHUG00000003826) bmp16 (ENSHHUG00000003835) gemin7 (ENSHHUG00000003837) ENSHHUG00000003845 PTGIR (ENSHHUG00000004308) ENSHHUG00000004312 ppm1na (ENSHHUG00000004316) rtn2a (ENSHHUG00000004319) rhoub (ENSHHUG00000004325) rab4b (ENSHHUG00000004327) ap2s1 (ENSHHUG00000004485) ENSHHUG00000004517 ARHGAP35 (ENSHHUG00000004527) ##22 tmem160 (ENSHHUG00000004544) ENSHHUG00000004554 slc1a5 (ENSHHUG00000004571) fkrp (ENSHHUG00000004577) STRN4 (ENSHHUG00000004590) PRKD2 (ENSHHUG00000004711) gpr184 (ENSHHUG00000004912) ENSHHUG00000004917 si:dkey-202l22.3 (ENSHHUG00000004919) DSCAML1 (ENSHHUG00000004925) Northern pike DUPLICATION Northern pike MODERN SPECIES clptm1 (ENSELUG00000014159) ENSELUG00000000515 mrpl28 (ENSELUG00000014104) ENSELUG00000014075 ppp1r37 (ENSELUG00000000513) bmp16 (ENSELUG00000014051) gemin7 (ENSELUG00000014034) ENSELUG00000014007 PTGIR (ENSELUG00000013943) ENSELUG00000013934 ppm1na (ENSELUG00000013890) rtn2a (ENSELUG00000013859) rhoub (ENSELUG00000013830) rab4b (ENSELUG00000013817) ap2s1 (ENSELUG00000013793) ARHGAP35 (ENSELUG00000013772) ##22 NPAS1 (ENSELUG00000034542) tmem160 (ENSELUG00000013720) ENSELUG00000013701 slc1a5 (ENSELUG00000013665) fkrp (ENSELUG00000001171) STRN4 (ENSELUG00000013635) PRKD2 (ENSELUG00000013565) gpr184 (ENSELUG00000013456) si:dkey-202l22.3 (ENSELUG00000013452) ENSELUG00000000496 DSCAML1 (ENSELUG00000013428) ENSELUG00000000487 fxyd6 (ENSELUG00000027900) TMPRSS13 (ENSELUG00000013355) il10ra (ENSELUG00000013324) Northern pike MODERN SPECIES 6 thoc2 (ENSELUG00000007778) stag2a (ENSELUG00000007837) acsl4b (ENSELUG00000007875) ercc6l (ENSELUG00000007917) ARAP1 (ENSELUG00000007968) PDE2A (ENSELUG00000008010) mtmr2 (ENSELUG00000008035) fam76b (ENSELUG00000008046) sesn3 (ENSELUG00000008067) cwc15 (ENSELUG00000008086) panx1b (ENSELUG00000000298) epd (ENSELUG00000008157) ENSELUG00000008169 myo1ca (ENSELUG00000008302) ENSELUG00000001334 ENSELUG00000026412 ##22 PRLHR (ENSELUG00000031083) DSCAML1 (ENSELUG00000008480) ENSELUG00000026686 ENSELUG00000025238 ENSELUG00000008540 tmprss4b (ENSELUG00000008566) scn4bb (ENSELUG00000008602) mpzl2b (ENSELUG00000000326) pafah1b2 (ENSELUG00000008656) apoa1a (ENSELUG00000030322) ENSELUG00000028639 tagln2 (ENSELUG00000001168) tppp2 (ENSELUG00000008741) ENSELUG00000008768 ENSELUG00000008778 Acanthomorphata ANCESTRAL SPECIES 8 ENSGT00530000063461.B ENSGT00940000160230 ENSGT00390000017359 ENSGT00940000156484.a ENSGT00970000195560 ENSGT00940000155666.d ENSGT00390000018039 ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT00940000154553.a.a.c ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00940000162008 ENSGT00940000154390.B ENSGT00390000009562 ENSGT00940000155354.a ENSGT00940000176207 ENSGT00940000153062.B ENSGT00940000159197 Euacanthomorphacea ANCESTRAL SPECIES 8 ENSGT00390000017359 ENSGT00940000156484.a ENSGT00970000195560 ENSGT00940000155666.d ENSGT00390000018039 ENSGT00940000166868.b ENSGT00950000182980.a.b.b.a.b.b ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000177307 ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00940000162008 ENSGT00940000154390.B ENSGT00390000009562 ENSGT00940000155354.a ENSGT00940000176207 ENSGT00940000153062.B ENSGT00940000159197 Pinecone sodierfish MODERN SPECIES 4 ENSMMDG00005005543 mrpl28 (ENSMMDG00005005538) ppp1r37 (ENSMMDG00005005222) bmp16 (ENSMMDG00005004472) gemin7 (ENSMMDG00005014211) ENSMMDG00005014207 calm3a (ENSMMDG00005014140) PTGIR (ENSMMDG00005014135) ENSMMDG00005014132 ppm1na (ENSMMDG00005014038) ENSMMDG00005014036 rtn2a (ENSMMDG00005014006) rhoub (ENSMMDG00005014003) rab4b (ENSMMDG00005013995) ap2s1 (ENSMMDG00005013914) ARHGAP35 (ENSMMDG00005013906) ##22 NPAS1 (ENSMMDG00005013903) tmem160 (ENSMMDG00005013900) ENSMMDG00005013899 ENSMMDG00005013898 slc1a5 (ENSMMDG00005013896) fkrp (ENSMMDG00005013893) STRN4 (ENSMMDG00005013890) PRKD2 (ENSMMDG00005011320) gpr184 (ENSMMDG00005011248) ENSMMDG00005011168 ENSMMDG00005011156 DSCAML1 (ENSMMDG00005011151) ENSMMDG00005011149 ENSMMDG00005011148 ENSMMDG00005011146 Percomorphaceae ANCESTRAL SPECIES 8 ENSGT00940000156484.a ENSGT00970000195560 ENSGT00940000153118 ENSGT00940000155666.d ENSGT00390000018039 ENSGT00940000166868.b ENSGT00950000182980.a.b.b.a.b.b ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000177307 ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00940000162008 ENSGT00940000154390.B ENSGT00390000009562 ENSGT00940000155354.a ENSGT00940000176207 ENSGT00940000153062.B ENSGT00940000159197 Percomorphaceae_B ANCESTRAL SPECIES 13 ENSGT00940000156484.a ENSGT00940000157454 ENSGT00940000153118 ENSGT00940000155666.d ENSGT00390000018039 ENSGT00940000166868.b ENSGT00950000182980.a.b.b.a.b.b ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000177307 ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00940000164128.b ENSGT00940000154390.B ENSGT00390000009562 ENSGT00940000155354.a ENSGT00940000176207 ENSGT00940000153062.B ENSGT00940000159197 Ovalentaria ANCESTRAL SPECIES 8 ENSGT00940000156484.a ENSGT00940000157454 ENSGT00940000153118 ENSGT00940000155666.d ENSGT00390000018039 ENSGT00940000166868.b ENSGT00950000182980.a.b.b.a.b.b ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000177307 ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00940000164128.b ENSGT00940000154390.B ENSGT00390000009562 ENSGT00940000155354.a ENSGT00940000176207 ENSGT00940000153062.B ENSGT00940000159197 Ovalentaria_B ANCESTRAL SPECIES 11 ENSGT00940000156484.a ENSGT00940000157454 ENSGT00940000153118 ENSGT00940000155666.d ENSGT00390000018039 ENSGT00940000166868.b ENSGT00950000182980.a.b.b.a.b.b ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000177307 ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00940000164128.b ENSGT00940000154390.B ENSGT00390000009562 ENSGT00940000155354.a ENSGT00940000182393 ENSGT00940000176207 ENSGT00940000153062.B Pomacentridae ANCESTRAL SPECIES 5 ENSGT00940000156484.a ENSGT00940000157454 ENSGT00940000153118 ENSGT00940000155666.d ENSGT00390000018039 ENSGT00940000166868.b ENSGT00950000182980.a.b.b.a.b.b ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000177307 ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295.q ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00940000164128.b ENSGT00940000154390.B ENSGT00390000009562 ENSGT00940000155354.a ENSGT00940000182393 ENSGT00940000176207 ENSGT00940000153062.B.j Pomacentridae_A ANCESTRAL SPECIES 4 ENSGT00940000156484.a ENSGT00940000157454 ENSGT00940000153118 ENSGT00940000155666.d ENSGT00390000018039 ENSGT00940000166868.b ENSGT00950000182980.a.b.b.a.b.b ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000177307 ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295.q ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00940000164128.b ENSGT00940000154390.B ENSGT00390000009562 ENSGT00940000155354.a ENSGT00940000176207 ENSGT00940000153062.B.j ENSGT00940000159197 Amphiprion ANCESTRAL SPECIES 6 ENSGT00940000156484.a ENSGT00940000157454 ENSGT00940000153118 ENSGT00940000155666.d ENSGT00390000018039 ENSGT00940000166868.b ENSGT00950000182980.a.b.b.a.b.b ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000177307 ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295.q ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00940000164128.b ENSGT00940000154390.B ENSGT00390000009562 ENSGT00940000155354.a ENSGT00940000176207 ENSGT00940000153062.B.j ENSGT00940000159197 Orange clownfish MODERN SPECIES 23 ppp1r37 (ENSAPEG00000010771) ENSAPEG00000010782 bmp16 (ENSAPEG00000010826) gemin7 (ENSAPEG00000010856) ENSAPEG00000010879 calm3a (ENSAPEG00000010897) PTGIR (ENSAPEG00000010934) ENSAPEG00000010941 ppm1na (ENSAPEG00000010976) ENSAPEG00000011018 rtn2a (ENSAPEG00000011030) rhoub (ENSAPEG00000011089) ENSAPEG00000011109 rab4b (ENSAPEG00000011130) ap2s1 (ENSAPEG00000011184) ARHGAP35 (ENSAPEG00000011195) ##22 NPAS1 (ENSAPEG00000011225) tmem160 (ENSAPEG00000011303) ENSAPEG00000011316 slc1a5 (ENSAPEG00000011336) fkrp (ENSAPEG00000011378) STRN4 (ENSAPEG00000011395) PRKD2 (ENSAPEG00000011511) gpr184 (ENSAPEG00000011643) ENSAPEG00000011648 ENSAPEG00000011687 ENSAPEG00000011719 DSCAML1 (ENSAPEG00000011746) ENSAPEG00000011889 ENSAPEG00000011902 ENSAPEG00000011920 Clown anemonefish MODERN SPECIES 1748 rhoub (ENSAOCG00000014198) rab4b (ENSAOCG00000014179) ap2s1 (ENSAOCG00000014146) ARHGAP35 (ENSAOCG00000014133) ##22 NPAS1 (ENSAOCG00000014111) tmem160 (ENSAOCG00000014066) ENSAOCG00000014059 slc1a5 (ENSAOCG00000014040) fkrp (ENSAOCG00000014001) STRN4 (ENSAOCG00000013977) PRKD2 (ENSAOCG00000013877) gpr184 (ENSAOCG00000013783) ENSAOCG00000013771 Spiny chromis MODERN SPECIES 48 mrpl28 (ENSAPOG00000016883) ENSAPOG00000000460 ppp1r37 (ENSAPOG00000016897) ENSAPOG00000016927 bmp16 (ENSAPOG00000016950) gemin7 (ENSAPOG00000016954) ENSAPOG00000016975 calm3a (ENSAPOG00000016996) PTGIR (ENSAPOG00000000955) ENSAPOG00000017041 ppm1na (ENSAPOG00000017178) rtn2a (ENSAPOG00000017202) rhoub (ENSAPOG00000017216) rab4b (ENSAPOG00000017258) ap2s1 (ENSAPOG00000017271) ARHGAP35 (ENSAPOG00000017295) ##22 NPAS1 (ENSAPOG00000017306) tmem160 (ENSAPOG00000017335) ENSAPOG00000017357 Cichlidae ANCESTRAL SPECIES 25 ENSGT00390000017359 ENSGT00940000156484.a ENSGT00940000157454 ENSGT00940000153118 ENSGT00940000155666.d ENSGT00390000018039 ENSGT00950000182980.a.b.b.a.b.b ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000177307 ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00940000164128.b ENSGT00940000154390.B ENSGT00390000009562 ENSGT00940000155354.a ENSGT00940000182393 ENSGT00940000176207 ENSGT00940000153062.B Pseudocrenilabrinae ANCESTRAL SPECIES 22 ENSGT00390000017359 ENSGT00940000156484.a ENSGT00940000157454 ENSGT00940000153118 ENSGT00940000155666.d ENSGT00390000018039 ENSGT00950000182980.a.b.b.a.b.b ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000177307 ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00940000164128.b ENSGT00940000154390.B ENSGT00390000009562 ENSGT00940000155354.a ENSGT00940000176207 ENSGT00940000153062.B ENSGT00940000159197 Pseudocrenilabrinae_A ANCESTRAL SPECIES 15 ENSGT00990000203749 ENSGT00390000018039 ENSGT00940000155666.d ENSGT00940000153118 ENSGT00940000157454 ENSGT00940000156484.a ENSGT00390000017359 ENSGT00950000182980.a.b.b.a.b.b ENSGT01050000244902.b.d ENSGT00940000164695.a ENSGT00940000177307 ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00940000164128.b ENSGT00940000154390.B ENSGT00390000009562 ENSGT00940000155354.a ENSGT00940000176207 ENSGT00940000153062.B ENSGT00940000159197 Haplochromini ANCESTRAL SPECIES 15 ENSGT00990000203749 ENSGT00390000018039 ENSGT00940000155666.d ENSGT00940000153118 ENSGT00940000157454 ENSGT00940000156484.a ENSGT00390000017359 ENSGT00950000182980.a.b.b.a.b.b ENSGT01050000244902.b.d ENSGT00940000164695.a ENSGT00940000177307 ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00940000164128.b ENSGT00940000154390.B ENSGT00390000009562 ENSGT00940000155354.a ENSGT00940000176207 ENSGT00940000153062.B ENSGT00940000159197 Haplochromini_A ANCESTRAL SPECIES 20 ENSGT00990000203749 ENSGT00390000018039 ENSGT00940000155666.d ENSGT00940000153118 ENSGT00940000157454 ENSGT00940000156484.a ENSGT00390000017359 ENSGT00950000182980.a.b.b.a.b.b ENSGT01050000244902.b.d ENSGT00940000164695.a ENSGT00940000177307 ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00940000164128.b ENSGT00940000154390.B ENSGT00390000009562 ENSGT00940000155354.a ENSGT00940000176207 ENSGT00940000153062.B ENSGT01100000263714 Haplochromini_B ANCESTRAL SPECIES 9 ENSGT00990000203749 ENSGT00390000018039 ENSGT00940000155666.d ENSGT00940000153118 ENSGT00940000157454 ENSGT00940000156484.a ENSGT00390000017359 ENSGT00950000182980.a.b.b.a.b.b ENSGT01050000244902.b.d ENSGT00940000164695.a ENSGT00940000177307 ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00940000164128.b ENSGT00940000154390.B ENSGT00390000009562 ENSGT00940000155354.a ENSGT00940000176207 ENSGT00940000153062.B ENSGT00940000159197 Eastern happy MODERN SPECIES 5 gemin7 (ENSACLG00000017160) bmp16 (ENSACLG00000017170) ENSACLG00000017247 ppp1r37 (ENSACLG00000017303) ENSACLG00000017369 mrpl28 (ENSACLG00000017376) ENSACLG00000017402 ENSACLG00000017412 ENSACLG00000017450 PTGIR (ENSACLG00000017460) rtn2a (ENSACLG00000017475) ppm1na (ENSACLG00000017560) rhoub (ENSACLG00000017582) rab4b (ENSACLG00000017589) ap2s1 (ENSACLG00000017617) ARHGAP35 (ENSACLG00000017654) ##22 NPAS1 (ENSACLG00000017707) tmem160 (ENSACLG00000017722) EGLN2 (ENSACLG00000017731) slc1a5 (ENSACLG00000017764) fkrp (ENSACLG00000017782) STRN4 (ENSACLG00000017792) PRKD2 (ENSACLG00000017889) gpr184 (ENSACLG00000018018) ENSACLG00000018025 ENSACLG00000018041 ENSACLG00000018052 DSCAML1 (ENSACLG00000018094) ENSACLG00000018275 fxyd6 (ENSACLG00000018290) tmprss13b (ENSACLG00000018334) Zebra mbuna MODERN SPECIES 1096 bmp16 (ENSMZEG00005016468) gemin7 (ENSMZEG00005016459) ENSMZEG00005016457 ENSMZEG00005016451 ENSMZEG00005016444 ENSMZEG00005016437 dpcd (ENSMZEG00005016422) ENSMZEG00005016410 PTGIR (ENSMZEG00005016402) ppm1na (ENSMZEG00005016391) ENSMZEG00005016388 rtn2a (ENSMZEG00005016385) rhoub (ENSMZEG00005016378) rab4b (ENSMZEG00005016373) ap2s1 (ENSMZEG00005016368) ARHGAP35 (ENSMZEG00005016358) ##22 NPAS1 (ENSMZEG00005016333) tmem160 (ENSMZEG00005016316) EGLN2 (ENSMZEG00005016309) slc1a5 (ENSMZEG00005016302) fkrp (ENSMZEG00005016301) STRN4 (ENSMZEG00005016296) PRKD2 (ENSMZEG00005016268) gpr184 (ENSMZEG00005016255) ENSMZEG00005016247 ENSMZEG00005016239 ENSMZEG00005016235 DSCAML1 (ENSMZEG00005016225) ENSMZEG00005016217 fxyd6 (ENSMZEG00005016211) tmprss13b (ENSMZEG00005016202) Lyretail cichlid MODERN SPECIES 327 ENSNBRG00000005366 gemin7 (ENSNBRG00000005377) bmp16 (ENSNBRG00000005399) ENSNBRG00000005415 ppp1r37 (ENSNBRG00000005527) mrpl28 (ENSNBRG00000005544) ENSNBRG00000005576 PTGIR (ENSNBRG00000005586) ENSNBRG00000005603 ppm1na (ENSNBRG00000005618) ENSNBRG00000005646 rtn2a (ENSNBRG00000005652) rhoub (ENSNBRG00000005685) rab4b (ENSNBRG00000005698) ap2s1 (ENSNBRG00000005730) ARHGAP35 (ENSNBRG00000005754) ##22 NPAS1 (ENSNBRG00000005778) tmem160 (ENSNBRG00000005848) EGLN2 (ENSNBRG00000005857) slc1a5 (ENSNBRG00000005904) fkrp (ENSNBRG00000006122) STRN4 (ENSNBRG00000006138) PRKD2 (ENSNBRG00000006238) gpr184 (ENSNBRG00000006299) ENSNBRG00000006311 ENSNBRG00000006331 ENSNBRG00000006343 DSCAML1 (ENSNBRG00000006374) ENSNBRG00000006499 ENSNBRG00000006509 tmprss13b (ENSNBRG00000006533) Atherinomorphae ANCESTRAL SPECIES 15 ENSGT00390000017359 ENSGT00940000156484.a ENSGT00940000157454 ENSGT00940000153118 ENSGT00940000155666.d ENSGT00390000018039 ENSGT00950000182980.a.b.b.a.b.b ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000177307 ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00940000164214.l ENSGT00940000154390.B ENSGT00390000009562 ENSGT00940000155354.a ENSGT00940000176207 ENSGT00940000153062.B ENSGT00940000159197 Oryzias ANCESTRAL SPECIES 8 ENSGT00940000160230 ENSGT00390000017359 ENSGT00940000156484.a ENSGT00940000157454 ENSGT00940000153118 ENSGT00940000155666.d ENSGT00390000018039 ENSGT00950000182980.a.b.b.a.b.b ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295.s ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a.x ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00940000164214.l ENSGT00940000154390.B ENSGT00390000009562 ENSGT00940000155354.a ENSGT00940000176207 ENSGT00940000153062.B ENSGT00940000159197 Oryzias_b ANCESTRAL SPECIES 14 ENSGT00940000160230 ENSGT00390000017359 ENSGT00940000156484.a ENSGT00940000157454 ENSGT00940000153118 ENSGT00940000155666.d ENSGT00390000018039 ENSGT00950000182980.a.b.b.a.b.b ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295.s ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a.x ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00980000202353 ENSGT00940000155354.a ENSGT00940000176207 ENSGT00940000153062.B ENSGT00940000159197 ENSGT00510000054245 ENSGT00940000155207.a.a Indian medaka MODERN SPECIES 12 clptm1 (ENSOMEG00000013516) ENSOMEG00000013536 mrpl28 (ENSOMEG00000013553) ENSOMEG00000013567 ppp1r37 (ENSOMEG00000013594) ENSOMEG00000013642 bmp16 (ENSOMEG00000013665) calm3a (ENSOMEG00000013695) PTGIR (ENSOMEG00000013711) ENSOMEG00000013732 ppm1na (ENSOMEG00000013743) rtn2a (ENSOMEG00000000735) rhoub (ENSOMEG00000013845) rab4b (ENSOMEG00000013881) ap2s1 (ENSOMEG00000000353) ARHGAP35 (ENSOMEG00000013962) ##22 NPAS1 (ENSOMEG00000013988) tmem160 (ENSOMEG00000014008) EGLN2 (ENSOMEG00000014031) slc1a5 (ENSOMEG00000014071) fkrp (ENSOMEG00000014092) STRN4 (ENSOMEG00000014165) PRKD2 (ENSOMEG00000014217) gpr184 (ENSOMEG00000014227) si:dkey-202l22.3 (ENSOMEG00000014239) ENSOMEG00000014275 ENSOMEG00000014301 DSCAML1 (ENSOMEG00000014421) ENSOMEG00000014469 fxyd6 (ENSOMEG00000014490) tmprss13b (ENSOMEG00000014523) Javanese ricefish MODERN SPECIES 4 ENSOJAG00000002987 mrpl28 (ENSOJAG00000002974) ENSOJAG00000002968 ppp1r37 (ENSOJAG00000002937) ENSOJAG00000002927 bmp16 (ENSOJAG00000002922) gemin7 (ENSOJAG00000002917) ENSOJAG00000002765 PTGIR (ENSOJAG00000002721) ENSOJAG00000002717 ppm1na (ENSOJAG00000002711) rtn2a (ENSOJAG00000002700) rhoub (ENSOJAG00000002693) rab4b (ENSOJAG00000002672) ap2s1 (ENSOJAG00000002643) ARHGAP35 (ENSOJAG00000002635) ##22 NPAS1 (ENSOJAG00000002620) tmem160 (ENSOJAG00000002613) EGLN2 (ENSOJAG00000002604) slc1a5 (ENSOJAG00000002585) fkrp (ENSOJAG00000002572) STRN4 (ENSOJAG00000002540) PRKD2 (ENSOJAG00000001882) gpr184 (ENSOJAG00000019253) si:dkey-202l22.3 (ENSOJAG00000019242) ENSOJAG00000019228 DSCAML1 (ENSOJAG00000017785) ENSOJAG00000017617 fxyd6 (ENSOJAG00000017609) tmprss13b (ENSOJAG00000017600) il10ra (ENSOJAG00000017591) Cyprinodontiformes ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.b ##22 Cyprinodontoidei ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.b ##22 Poeciliinae ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.b ##22 Poecilia ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.b ##22 NAME_6 ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.b ##22 Sailfin molly MODERN SPECIES 3733 ENSPLAG00000001727 ##22 NAME_4 ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.b ##22 Sheepshead minnow MODERN SPECIES 310 ENSCVAG00000022622 ##22 DSCAML1 (ENSCVAG00000022579) scn4bb (ENSCVAG00000022329) ENSCVAG00000022299 pafah1b2 (ENSCVAG00000022288) TAGLN (ENSCVAG00000022274) gjd1a (ENSCVAG00000022256) rab6a (ENSCVAG00000022249) dnajb13 (ENSCVAG00000022210) ucp2 (ENSCVAG00000022181) ucp3 (ENSCVAG00000022170) ppme1 (ENSCVAG00000022154) ENSCVAG00000022131 nectin3b (ENSCVAG00000022118) rtn2b (ENSCVAG00000022112) ppm1nb (ENSCVAG00000022080) Percomorphaceae_C ANCESTRAL SPECIES 9 ENSGT00940000156484.a ENSGT00940000157454 ENSGT00940000153118 ENSGT00940000155666.d ENSGT00390000018039 ENSGT00940000166868.b ENSGT00950000182980.a.b.b.a.b.b ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000177307 ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00940000164128.b ENSGT00940000154390.B ENSGT00390000009562 ENSGT00940000155354.a ENSGT00940000176207 ENSGT00940000153062.B ENSGT00940000159197 Eupercaria ANCESTRAL SPECIES 7 ENSGT00940000156484.a ENSGT00940000157454 ENSGT00940000153118 ENSGT00940000155666.d ENSGT00390000018039 ENSGT00940000166868.b ENSGT00950000182980.a.b.b.a.b.b ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000177307 ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00940000164128.b ENSGT00940000154390.B ENSGT00390000009562 ENSGT00940000155354.a ENSGT00940000176207 ENSGT00940000153062.B ENSGT00940000159197 Eupecaria_A ANCESTRAL SPECIES 9 ENSGT00940000156484.a ENSGT00940000157454 ENSGT00940000153118 ENSGT00940000155666.d ENSGT00390000018039 ENSGT00940000166868.b ENSGT00950000182980.a.b.b.a.b.b ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000177307 ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00940000164128.b ENSGT00940000154390.B ENSGT00390000009562 ENSGT00940000155354.a ENSGT00940000176207 ENSGT00940000153062.B ENSGT00940000159197 Eupecaria_B ANCESTRAL SPECIES 9 ENSGT00940000156484.a ENSGT00940000157454 ENSGT00940000153118 ENSGT00940000155666.d ENSGT00390000018039 ENSGT00940000166868.b ENSGT00950000182980.a.b.b.a.b.b ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000177307 ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00940000164128.b ENSGT00940000154390.B ENSGT00390000009562 ENSGT00940000155354.a ENSGT00940000176207 ENSGT00940000153062.B ENSGT00940000159197 Perciformes ANCESTRAL SPECIES 10 ENSGT00940000156484.a ENSGT00940000157454 ENSGT00940000153118 ENSGT00940000155666.d ENSGT00390000018039 ENSGT00940000166868.b ENSGT00950000182980.a.b.b.a.b.b ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000177307 ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00940000164128.b ENSGT00940000154390.B ENSGT00390000009562 ENSGT00940000155354.a ENSGT00940000176207 ENSGT00940000153062.B ENSGT00940000159197 Cottioidei ANCESTRAL SPECIES 4 ENSGT00390000017359 ENSGT00940000156484.a ENSGT00940000157454 ENSGT00940000153118 ENSGT00940000155666.d ENSGT00390000018039 ENSGT00940000166868.b ENSGT00950000182980.a.b.b.a.b.b ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00940000164128.b ENSGT00940000154390.B ENSGT00390000009562 ENSGT00940000155354.a ENSGT00940000159197 ENSGT00510000054245 ENSGT00940000155418.a.a.c Lumpfish MODERN SPECIES 4 ENSCLMG00005015546 mrpl28 (ENSCLMG00005015544) ppp1r37 (ENSCLMG00005015351) ENSCLMG00005015349 bmp16 (ENSCLMG00005015348) gemin7 (ENSCLMG00005015347) ENSCLMG00005015346 calm3a (ENSCLMG00005015297) PTGIR (ENSCLMG00005015296) ENSCLMG00005015295 ppm1na (ENSCLMG00005015264) rtn2a (ENSCLMG00005015244) rhoub (ENSCLMG00005015243) rab4b (ENSCLMG00005015242) ap2s1 (ENSCLMG00005015240) ENSCLMG00005015236 ##22 NPAS1 (ENSCLMG00005015233) tmem160 (ENSCLMG00005015230) ENSCLMG00005015228 slc1a5 (ENSCLMG00005015226) fkrp (ENSCLMG00005015224) STRN4 (ENSCLMG00005015102) PRKD2 (ENSCLMG00005012032) gpr184 (ENSCLMG00005012014) prlh2r (ENSCLMG00005012013) DSCAML1 (ENSCLMG00005011621) ENSCLMG00005011617 tmprss13b (ENSCLMG00005011616) ENSCLMG00005011613 mre11a (ENSCLMG00005010477) DOCK10 (ENSCLMG00005005453) Eupecaria_C ANCESTRAL SPECIES 7 ENSGT00940000160230 ENSGT00390000017359 ENSGT00940000156484.a ENSGT00940000153118 ENSGT00940000155666.d ENSGT00390000018039 ENSGT00940000166868.b ENSGT00950000182980.a.b.b.a.b.b ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00940000164128.b ENSGT00940000154390.B ENSGT00390000009562 ENSGT00940000155354.a ENSGT00940000176207 ENSGT00940000153062.B ENSGT00940000159197 Eupercaria_incertae_sedis ANCESTRAL SPECIES 5 ENSGT00390000017359 ENSGT00940000156484.a ENSGT00940000157454 ENSGT00940000153118 ENSGT00940000155666.d ENSGT00390000018039 ENSGT00940000166868.b ENSGT00950000182980.a.b.b.a.b.b ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00940000164128.b ENSGT00940000154390.B ENSGT00390000009562 ENSGT00940000155354.a ENSGT00940000176207 ENSGT00940000153062.B ENSGT00940000159197 Large yellow croaker MODERN SPECIES 479 ENSLCRG00005002964 ppp1r37 (ENSLCRG00005002828) ENSLCRG00005002809 bmp16 (ENSLCRG00005002805) gemin7 (ENSLCRG00005002804) ENSLCRG00005002799 calm3a (ENSLCRG00005002706) PTGIR (ENSLCRG00005002699) ENSLCRG00005002691 ENSLCRG00005002688 ppm1na (ENSLCRG00005002684) rtn2a (ENSLCRG00005002680) rhoub (ENSLCRG00005002675) rab4b (ENSLCRG00005002663) ap2s1 (ENSLCRG00005002386) ARHGAP35 (ENSLCRG00005002362) ##22 NPAS1 (ENSLCRG00005002351) ENSLCRG00005002346 tmem160 (ENSLCRG00005015005) ENSLCRG00005015002 slc1a5 (ENSLCRG00005014999) fkrp (ENSLCRG00005014997) STRN4 (ENSLCRG00005014761) PRKD2 (ENSLCRG00005013088) gpr184 (ENSLCRG00005013068) si:dkey-202l22.3 (ENSLCRG00005013067) ENSLCRG00005013065 ENSLCRG00005013063 DSCAML1 (ENSLCRG00005013028) ENSLCRG00005013023 fxyd6 (ENSLCRG00005013022) European seabass MODERN SPECIES 3 mrpl28 (ENSDLAG00005000825) ENSDLAG00005000818 ppp1r37 (ENSDLAG00005000772) ENSDLAG00005000758 bmp16 (ENSDLAG00005000755) gemin7 (ENSDLAG00005000753) ENSDLAG00005000747 calm3a (ENSDLAG00005000735) ENSDLAG00005000729 ENSDLAG00005000727 ppm1na (ENSDLAG00005027240) rtn2a (ENSDLAG00005000721) rhoub (ENSDLAG00005000718) rab4b (ENSDLAG00005000714) ap2s1 (ENSDLAG00005030226) ARHGAP35 (ENSDLAG00005000707) ##22 ENSDLAG00005027965 ENSDLAG00005000698 tmem160 (ENSDLAG00005035128) slc1a5 (ENSDLAG00005030735) fkrp (ENSDLAG00005000689) STRN4 (ENSDLAG00005000469) PRKD2 (ENSDLAG00005029851) PRKD2 (ENSDLAG00005027454) gpr184 (ENSDLAG00005000092) ENSDLAG00005030816 ENSDLAG00005000082 ENSDLAG00005015995 ENSDLAG00005015988 ENSDLAG00005014590 ENSDLAG00005014538 Gilthead seabream MODERN SPECIES 11 ENSSAUG00010013629 ENSSAUG00010013630 ppp1r37 (ENSSAUG00010013635) ENSSAUG00010013745 bmp16 (ENSSAUG00010013747) gemin7 (ENSSAUG00010013748) ENSSAUG00010013752 calm3a (ENSSAUG00010013755) PTGIR (ENSSAUG00010013890) ENSSAUG00010013893 ppm1na (ENSSAUG00010013895) rtn2a (ENSSAUG00010013899) rhoub (ENSSAUG00010013901) rab4b (ENSSAUG00010013905) ap2s1 (ENSSAUG00010013923) ARHGAP35 (ENSSAUG00010014039) ##22 NPAS1 (ENSSAUG00010014044) ENSSAUG00010014047 tmem160 (ENSSAUG00010014050) ENSSAUG00010014055 slc1a5 (ENSSAUG00010014062) fkrp (ENSSAUG00010014067) STRN4 (ENSSAUG00010014073) ENSSAUG00010014078 PRKD2 (ENSSAUG00010014099) gpr184 (ENSSAUG00010014259) si:dkey-202l22.3 (ENSSAUG00010014261) ENSSAUG00010014262 ENSSAUG00010014263 DSCAML1 (ENSSAUG00010014285) ENSSAUG00010014729 Tetraodontidae ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.b ##22 Tetraodon MODERN SPECIES 22 trpc2b (ENSTNIG00000011784) rb1 (ENSTNIG00000011786) LPAR6 (ENSTNIG00000011785) slc6a7 (ENSTNIG00000011787) taf1 (ENSTNIG00000011788) fam76b (ENSTNIG00000011789) mtmr2 (ENSTNIG00000004380) cwc15 (ENSTNIG00000011790) plp1b (ENSTNIG00000011791) nlgn3b (ENSTNIG00000011792) gria3a (ENSTNIG00000011793) thoc2 (ENSTNIG00000011794) stag2a (ENSTNIG00000011795) epd (ENSTNIG00000011796) myo1ca (ENSTNIG00000011797) ARHGAP35 (ENSTNIG00000011798) ##22 DSCAML1 (ENSTNIG00000011799) mpzl2b (ENSTNIG00000002462) pafah1b2 (ENSTNIG00000011800) gjd1a (ENSTNIG00000011801) dnajb13 (ENSTNIG00000011802) ucp2 (ENSTNIG00000011803) ucp3 (ENSTNIG00000011804) ppme1 (ENSTNIG00000011805) nectin3b (ENSTNIG00000011806) rtn2b (ENSTNIG00000011807) ppm1nb (ENSTNIG00000011808) ENSTNIG00000001363 ENSTNIG00000011809 ccdc61 (ENSTNIG00000011810) ENSTNIG00000011811 Percomorphaceae_D ANCESTRAL SPECIES 9 ENSGT00390000017359 ENSGT00940000156484.a ENSGT00940000157454 ENSGT00940000153118 ENSGT00940000155666.d ENSGT00390000018039 ENSGT00940000166868.b ENSGT00950000182980.a.b.b.a.b.b ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00940000164128.b ENSGT00940000154390.B ENSGT00390000009562 ENSGT00940000155354.a ENSGT00940000176207 ENSGT00940000153062.B ENSGT00940000159197 Anabantaria ANCESTRAL SPECIES 9 ENSGT00940000160230 ENSGT00390000017359 ENSGT00940000156484.a ENSGT00940000157454 ENSGT00940000153118 ENSGT00940000155666.d ENSGT00390000018039 ENSGT00950000182980.a.b.b.a.b.b ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00940000164128.b ENSGT00940000154390.B ENSGT00390000009562 ENSGT00940000155354.a ENSGT00940000176207 ENSGT00940000153062.B ENSGT00940000159197 Anabantoidei ANCESTRAL SPECIES 14 ENSGT00940000160230 ENSGT00390000017359 ENSGT00940000156484.a ENSGT00940000157454 ENSGT00940000153118 ENSGT00940000155666.d ENSGT00390000018039 ENSGT00950000182980.a.b.b.a.b.b ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00940000164128.b ENSGT00940000154390.B ENSGT00390000009562 ENSGT00940000155354.a ENSGT00940000176207 ENSGT01030000234872 ENSGT00940000153062.B Climbing perch MODERN SPECIES 4 ENSATEG00000013107 mrpl28 (ENSATEG00000013085) ENSATEG00000013073 ppp1r37 (ENSATEG00000013054) ENSATEG00000013043 bmp16 (ENSATEG00000013021) gemin7 (ENSATEG00000012989) ENSATEG00000012960 ENSATEG00000012953 ENSATEG00000012941 ppm1na (ENSATEG00000012925) rtn2a (ENSATEG00000026895) rhoub (ENSATEG00000026799) rab4b (ENSATEG00000012855) ap2s1 (ENSATEG00000012831) ARHGAP35 (ENSATEG00000012799) ##22 NPAS1 (ENSATEG00000012695) tmem160 (ENSATEG00000012679) ENSATEG00000012670 slc1a5 (ENSATEG00000012644) fkrp (ENSATEG00000012629) STRN4 (ENSATEG00000012485) PRKD2 (ENSATEG00000012391) gpr184 (ENSATEG00000012382) si:dkey-202l22.3 (ENSATEG00000012365) ENSATEG00000012353 ENSATEG00000012345 ENSATEG00000012199 ENSATEG00000012179 ENSATEG00000012161 ENSATEG00000012152 Siamese fighting fish MODERN SPECIES 4 mrpl28 (ENSBSLG00000005893) ENSBSLG00000005898 ppp1r37 (ENSBSLG00000006589) ENSBSLG00000007081 bmp16 (ENSBSLG00000007088) gemin7 (ENSBSLG00000007092) ENSBSLG00000007117 PTGIR (ENSBSLG00000007204) ENSBSLG00000007206 ppm1na (ENSBSLG00000007209) rtn2a (ENSBSLG00000007224) rhoub (ENSBSLG00000007238) gemin7 (ENSBSLG00000007242) rab4b (ENSBSLG00000007254) ap2s1 (ENSBSLG00000007305) ARHGAP35 (ENSBSLG00000007336) ##22 NPAS1 (ENSBSLG00000007346) tmem160 (ENSBSLG00000007376) ENSBSLG00000007382 slc1a5 (ENSBSLG00000007391) fkrp (ENSBSLG00000007406) STRN4 (ENSBSLG00000007435) PRKD2 (ENSBSLG00000008049) gpr184 (ENSBSLG00000010243) ENSBSLG00000010246 ENSBSLG00000010258 ENSBSLG00000010264 DSCAML1 (ENSBSLG00000010302) ENSBSLG00000012325 ENSBSLG00000012331 fxyd6 (ENSBSLG00000012337) Carangaria ANCESTRAL SPECIES 8 ENSGT00390000017359 ENSGT00940000156484.a ENSGT00940000157454 ENSGT00940000153118 ENSGT00940000155666.d ENSGT00390000018039 ENSGT00940000166868.b ENSGT00950000182980.a.b.b.a.b.b ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00940000164128.b ENSGT00940000154390.B ENSGT00390000009562 ENSGT00940000155354.a ENSGT00940000176207 ENSGT00940000153062.B ENSGT00940000159197 Carangaria_A ANCESTRAL SPECIES 10 ENSGT00390000017359 ENSGT00940000156484.a ENSGT00940000157454 ENSGT00940000153118 ENSGT00940000155666.d ENSGT00390000018039 ENSGT00940000166868.b ENSGT00950000182980.a.b.b.a.b.b ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00940000164214.l ENSGT00940000154390.B ENSGT00390000009562 ENSGT00940000155354.a ENSGT00940000176207 ENSGT00940000153062.B ENSGT00940000159197 Seriola ANCESTRAL SPECIES 62 ENSGT00390000017359 ENSGT00940000156484.a ENSGT00970000195560 ENSGT00940000153118 ENSGT00940000155666.d ENSGT00390000018039 ENSGT00940000166868.b ENSGT00950000182980.a.b.b.a.b.b ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00940000154390.B ENSGT00390000009562 ENSGT00940000155354.a ENSGT00940000176207 ENSGT00940000153062.B ENSGT00940000159197 ENSGT00510000054245 Yellowtail amberjack MODERN SPECIES 2765 mrpl28 (ENSSLDG00000000409) ENSSLDG00000000398 ENSSLDG00000000394 ENSSLDG00000000257 bmp16 (ENSSLDG00000000217) gemin7 (ENSSLDG00000000173) ENSSLDG00000000157 calm3a (ENSSLDG00000000103) PTGIR (ENSSLDG00000022322) ENSSLDG00000022309 ppm1na (ENSSLDG00000022294) rtn2a (ENSSLDG00000022267) rhoub (ENSSLDG00000022253) rab4b (ENSSLDG00000022231) ap2s1 (ENSSLDG00000022219) ARHGAP35 (ENSSLDG00000022208) ##22 NPAS1 (ENSSLDG00000022197) tmem160 (ENSSLDG00000022177) ENSSLDG00000022164 slc1a5 (ENSSLDG00000022155) fkrp (ENSSLDG00000022150) STRN4 (ENSSLDG00000022100) PRKD2 (ENSSLDG00000022017) gpr184 (ENSSLDG00000022007) si:dkey-202l22.3 (ENSSLDG00000021994) ENSSLDG00000021987 ENSSLDG00000021983 ENSSLDG00000021976 DSCAML1 (ENSSLDG00000021929) ENSSLDG00000021918 fxyd6 (ENSSLDG00000021910) Greater amberjack MODERN SPECIES 256 mrpl28 (ENSSDUG00000005764) ENSSDUG00000005754 ppp1r37 (ENSSDUG00000005737) ENSSDUG00000005700 bmp16 (ENSSDUG00000005681) gemin7 (ENSSDUG00000005677) ENSSDUG00000005665 calm3a (ENSSDUG00000005643) PTGIR (ENSSDUG00000005631) ENSSDUG00000005617 ppm1na (ENSSDUG00000005546) rtn2a (ENSSDUG00000005515) rhoub (ENSSDUG00000005508) rab4b (ENSSDUG00000005481) ap2s1 (ENSSDUG00000005475) ARHGAP35 (ENSSDUG00000005456) ##22 NPAS1 (ENSSDUG00000005432) tmem160 (ENSSDUG00000005406) ENSSDUG00000005372 slc1a5 (ENSSDUG00000005338) fkrp (ENSSDUG00000005327) STRN4 (ENSSDUG00000005308) PRKD2 (ENSSDUG00000005199) gpr184 (ENSSDUG00000005178) si:dkey-202l22.3 (ENSSDUG00000005151) Barramundi perch MODERN SPECIES 316 mrpl28 (ENSLCAG00010019213) ENSLCAG00010019207 ppp1r37 (ENSLCAG00010019178) ENSLCAG00010019168 bmp16 (ENSLCAG00010019164) gemin7 (ENSLCAG00010019160) ENSLCAG00010019159 calm3a (ENSLCAG00010019063) PTGIR (ENSLCAG00010019043) ENSLCAG00010019034 ppm1na (ENSLCAG00010019028) ENSLCAG00010019017 rhoub (ENSLCAG00010019007) rab4b (ENSLCAG00010018968) ap2s1 (ENSLCAG00010018929) ARHGAP35 (ENSLCAG00010018908) ##22 NPAS1 (ENSLCAG00010018893) tmem160 (ENSLCAG00010018884) ENSLCAG00010018876 slc1a5 (ENSLCAG00010018862) fkrp (ENSLCAG00010018855) STRN4 (ENSLCAG00010018847) PRKD2 (ENSLCAG00010018759) gpr184 (ENSLCAG00010018742) ENSLCAG00010018735 ENSLCAG00010018731 ENSLCAG00010018729 Pleuronectoidei ANCESTRAL SPECIES 13 ENSGT00390000017359 ENSGT00940000156484.a ENSGT00940000157454 ENSGT00940000153118 ENSGT00940000155666.d ENSGT00390000018039 ENSGT00940000166868.b ENSGT00950000182980.a.b.b.a.b.b ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00940000164128.b ENSGT00940000154390.B ENSGT00940000155354.a ENSGT00940000176207 ENSGT01030000234872 ENSGT00940000159197 ENSGT00510000054245 Turbot MODERN SPECIES 15 mrpl28 (ENSSMAG00000013912) ENSSMAG00000013935 ppp1r37 (ENSSMAG00000013943) ENSSMAG00000013968 bmp16 (ENSSMAG00000014001) gemin7 (ENSSMAG00000014017) ENSSMAG00000032057 calm3a (ENSSMAG00000034840) ENSSMAG00000014044 ENSSMAG00000023018 ENSSMAG00000014108 ppm1na (ENSSMAG00000014095) rhoub (ENSSMAG00000035260) rab4b (ENSSMAG00000014221) ap2s1 (ENSSMAG00000014249) ARHGAP35 (ENSSMAG00000014276) ##22 NPAS1 (ENSSMAG00000014307) tmem160 (ENSSMAG00000014348) ENSSMAG00000014356 slc1a5 (ENSSMAG00000014367) fkrp (ENSSMAG00000014389) STRN4 (ENSSMAG00000014394) PRKD2 (ENSSMAG00000014413) gpr184 (ENSSMAG00000014491) ENSSMAG00000014495 ENSSMAG00000014511 ENSSMAG00000014562 ENSSMAG00000014784 ENSSMAG00000014796 ENSSMAG00000029322 il10ra (ENSSMAG00000014842) Tongue sole MODERN SPECIES 14 mrpl28 (ENSCSEG00000008095) ENSCSEG00000008107 ppp1r37 (ENSCSEG00000008118) ENSCSEG00000008130 bmp16 (ENSCSEG00000008137) gemin7 (ENSCSEG00000008152) ENSCSEG00000008160 calm3a (ENSCSEG00000008164) PTGIR (ENSCSEG00000008173) ENSCSEG00000008188 ppm1na (ENSCSEG00000008195) rtn2a (ENSCSEG00000008206) rhoub (ENSCSEG00000008236) rab4b (ENSCSEG00000008253) ap2s1 (ENSCSEG00000008268) ARHGAP35 (ENSCSEG00000008279) ##22 ENSCSEG00000008286 NPAS1 (ENSCSEG00000008295) tmem160 (ENSCSEG00000008300) ENSCSEG00000008308 slc1a5 (ENSCSEG00000008312) fkrp (ENSCSEG00000008321) STRN4 (ENSCSEG00000008326) PRKD2 (ENSCSEG00000008371) schip1 (ENSCSEG00000008410) MFSD1 (ENSCSEG00000008489) ENSCSEG00000008553 ENSCSEG00000008561 ENSCSEG00000008571 p2ry12 (ENSCSEG00000008584) ENSCSEG00000008606 Otomorpha ANCESTRAL SPECIES 44 ENSGT00940000166868.b ENSGT00950000182980.a.b.b.a.b.b.a ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00390000017583 ENSGT00940000159485 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00940000162008 ENSGT00940000154390.B ENSGT00390000009562 ENSGT00940000155354.a ENSGT00940000176207 ENSGT00940000153062.B ENSGT00940000155207.b Clupeiformes ANCESTRAL SPECIES 49 ENSGT00940000153881.b ENSGT00940000167036 ENSGT00940000158234 ENSGT00980000199080 ENSGT00940000164056 ENSGT00940000166868.b ENSGT00950000182980.a.b.a.b.a.a.f ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b ENSGT01100000263537.b.b.c.b ENSGT00940000162008 ENSGT00940000154390.B ENSGT00980000202353 ENSGT00940000155354.a ENSGT00940000176207 ENSGT00940000153062.B ENSGT01100000263714 Atlantic herring MODERN SPECIES 25 ENSCHAG00000008919 SHKBP1 (ENSCHAG00000007793) ENSCHAG00000007754 ENSCHAG00000007502 ENSCHAG00000007488 ENSCHAG00000007469 ENSCHAG00000007444 ENSCHAG00000007264 PTGIR (ENSCHAG00000007250) ENSCHAG00000007241 ppm1na (ENSCHAG00000007094) rtn2a (ENSCHAG00000007074) rhoub (ENSCHAG00000007057) rab4b (ENSCHAG00000006794) ap2s1 (ENSCHAG00000006660) ARHGAP35 (ENSCHAG00000006647) ##22 NPAS1 (ENSCHAG00000006603) tmem160 (ENSCHAG00000006585) ENSCHAG00000006556 slc1a5 (ENSCHAG00000006538) fkrp (ENSCHAG00000006507) STRN4 (ENSCHAG00000006142) PRKD2 (ENSCHAG00000003291) gpr184 (ENSCHAG00000003183) si:dkey-202l22.3 (ENSCHAG00000002598) ENSCHAG00000002476 ENSCHAG00000002364 DSCAML1 (ENSCHAG00000002307) ENSCHAG00000022231 slc25a27 (ENSCHAG00000021923) fxyd6 (ENSCHAG00000021916) Otophysi ANCESTRAL SPECIES 69 ENSGT00390000016695 ENSGT00940000159187 ENSGT00390000004856 ENSGT00940000153761.B ENSGT00730000111086 ENSGT00940000157960.j ENSGT00940000166868.b ENSGT00950000182980.a.b.b.a.b.b.a ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 Characiphysae ANCESTRAL SPECIES 39 ENSGT00940000153259.a.a.b ENSGT00390000016695 ENSGT00940000159187 ENSGT00390000004856 ENSGT00940000153761.B ENSGT00730000111086 ENSGT00940000157960.j ENSGT00950000182980.a.b.b.a.b.b.a ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000157119.a ENSGT00940000153576.c.b.w ENSGT01100000263573.a.b ENSGT00940000157915 ENSGT00390000015210 ENSGT00940000161117 ENSGT00950000183101.a.a ENSGT00530000063751.b.j ENSGT00390000004155 ENSGT00950000183096.a.a.c.a ENSGT00940000158029 ENSGT00390000014595.a.a.a Characiphysae_b ANCESTRAL SPECIES 38 ENSGT00950000183171.B ENSGT00940000153259.a.a.b ENSGT00390000016695 ENSGT00940000159187 ENSGT00390000004856 ENSGT00940000153761.B ENSGT00730000111086 ENSGT00950000182980.a.b.b.a.b.b.a ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000157119.a ENSGT00940000153576.c.b.w ENSGT01100000263573.a.b ENSGT00940000157915 ENSGT00390000015210 ENSGT00940000161117 ENSGT00950000183101.a.a ENSGT00530000063751.b.j ENSGT00390000004155 ENSGT00950000183096.a.a.c.a ENSGT00940000158029 ENSGT00390000014595.a.a.a Characoidei ANCESTRAL SPECIES 53 ENSGT00950000183171.B ENSGT00940000153259.a.a.b ENSGT00390000016695 ENSGT00940000159187 ENSGT00390000004856 ENSGT00940000153761.B ENSGT00730000111086 ENSGT00950000182980.a.b.b.a.b.b.a ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000157119.a ENSGT00940000153576.c.b.w ENSGT01100000263573.a.b ENSGT00940000157915 ENSGT00390000015210 ENSGT00940000161117 ENSGT00950000183101.a.a ENSGT00530000063751.b.j ENSGT00390000004155 ENSGT00950000183096.a.a.c.a ENSGT00940000158029 ENSGT00390000014595.a.a.a Red-bellied piranha MODERN SPECIES 46 bach1a (ENSPNAG00000009992) ENSPNAG00000009973 MIPEP (ENSPNAG00000009947) SACS (ENSPNAG00000009883) sgcg (ENSPNAG00000009834) RPS25 (ENSPNAG00000009781) trappc4 (ENSPNAG00000009737) slc37a4a (ENSPNAG00000009765) PTGIR (ENSPNAG00000009713) ENSPNAG00000009702 ppm1na (ENSPNAG00000009674) rtn2a (ENSPNAG00000009651) rhoub (ENSPNAG00000009625) rab4b (ENSPNAG00000009616) ap2s1 (ENSPNAG00000009596) ARHGAP35 (ENSPNAG00000009576) ##22 NPAS1 (ENSPNAG00000009545) tmem160 (ENSPNAG00000009494) EGLN2 (ENSPNAG00000009484) pitpnaa (ENSPNAG00000009460) SLC43A2 (ENSPNAG00000009438) ENSPNAG00000009368 myo1cb (ENSPNAG00000009340) prpf8 (ENSPNAG00000009247) ENSPNAG00000009147 SCARF1 (ENSPNAG00000009134) vtna (ENSPNAG00000009118) sarm1 (ENSPNAG00000009102) slc46a1 (ENSPNAG00000001284) foxn1 (ENSPNAG00000009071) UNC119 (ENSPNAG00000009021) Electric eel MODERN SPECIES 1429 ENSEEEG00000006453 ##22 Cyprinoidei ANCESTRAL SPECIES 106 ENSGT01030000234618.D ENSGT00940000157792 ENSGT00390000016695 ENSGT00940000159187 ENSGT00940000153761.B ENSGT00730000111086 ENSGT00940000166868.b ENSGT00950000182980.a.b.b.a.b.b.a ENSGT01050000244902.b.d ENSGT00940000167255 ENSGT00940000164695.a ENSGT00940000167260 ENSGT00940000165900 ENSGT00940000159399 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655 ENSGT00940000153259.a.a.b ENSGT00950000183171.B ENSGT00940000158923.f ENSGT00940000167916 ENSGT00940000155947.a ENSGT00390000017040.n ENSGT00940000155349.c Zebrafish MODERN SPECIES 6 GAB2 (ENSDARG00000105120) ENSDARG00000116297 SACS (ENSDARG00000091042) sgcg (ENSDARG00000038107) trappc4 (ENSDARG00000027418) slc37a4a (ENSDARG00000038106) ENSDARG00000097085 calm3a (ENSDARG00000100825) PTGIR (ENSDARG00000038278) ENSDARG00000057504 ppm1na (ENSDARG00000010231) rtn2a (ENSDARG00000016088) rhoub (ENSDARG00000012968) rab4b (ENSDARG00000012177) ap2s1 (ENSDARG00000026967) ARHGAP35 (ENSDARG00000062577) ##22 npas1 (ENSDARG00000015876) tmem160 (ENSDARG00000069649) EGLN2 (ENSDARG00000062562) ENSDARG00000087835 tnfrsf19 (ENSDARG00000041869) MIPEP (ENSDARG00000055344) bach1a (ENSDARG00000062553) cadm2b (ENSDARG00000062633) GBE1 (ENSDARG00000099524) SLC7A1 (ENSDARG00000100227) her13 (ENSDARG00000007097) her8.2 (ENSDARG00000069675) PIK3CB (ENSDARG00000075253) foxl2a (ENSDARG00000042180) si:ch73-311h14.2 (ENSDARG00000098999) Cyprininae DUPLICATION Cyprininae DUPLICATION Cyprininae ANCESTRAL SPECIES 77 ENSGT01030000234566.e.b.b.a.i.b ENSGT01030000234618.D ENSGT00950000182996.b.a.a.b.d.a.f.a.a.a.b.a.a.b ENSGT00940000157792.k ENSGT00390000016695.t ENSGT00940000159187.d ENSGT00730000111086.a ENSGT00940000157960.j ENSGT00950000182980.a.b.b.a.b.b.a.a ENSGT01050000244902.b.d.c ENSGT00940000164695.a.i ENSGT00940000167260.b ENSGT00940000165900.f ENSGT00940000159399.b ENSGT00970000193421.A.z ENSGT01030000234635.a.b.a.b.b.a.b.e.a ##22 ENSGT00940000161295.cb ENSGT00390000012863.a ENSGT00940000160655.fb.b.a ENSGT00940000153259.a.a.b.e ENSGT00950000183171.B.x.b ENSGT00940000158923.f.a.a ENSGT00940000167916.b.b ENSGT00940000158923.f.b ENSGT00940000155947.a.c ENSGT00390000017040.n.b ENSGT00940000155349.c.b ENSGT00940000159485.d ENSGT00390000017583.h ENSGT00950000183095.a.b.a.b.a.z.a ENSGT00950000183024.a.b.b.e Goldfish MODERN SPECIES 6 nars2 (ENSCARG00000061831) ENSCARG00000061816 GAB2 (ENSCARG00000061806) SACS (ENSCARG00000061790) sgcg (ENSCARG00000061753) ENSCARG00000061750 slc37a4a (ENSCARG00000061723) ENSCARG00000061709 calm3a (ENSCARG00000061657) PTGIR (ENSCARG00000061645) ppm1na (ENSCARG00000061639) rtn2a (ENSCARG00000061609) rhoub (ENSCARG00000061608) rab4b (ENSCARG00000061561) ap2s1 (ENSCARG00000061326) ARHGAP35 (ENSCARG00000061274) ##22 NPAS1 (ENSCARG00000061204) tmem160 (ENSCARG00000061174) ENSCARG00000061139 tnfrsf19 (ENSCARG00000061108) ENSCARG00000060939 ENSCARG00000060916 ENSCARG00000060898 cadm2b (ENSCARG00000060168) GBE1 (ENSCARG00000059079) SLC7A1 (ENSCARG00000058903) ENSCARG00000058879 slc1a5 (ENSCARG00000058834) fkrp (ENSCARG00000058824) STRN4 (ENSCARG00000058769) PRKD2 (ENSCARG00000056289) Cyprininae_a ANCESTRAL SPECIES 92 ENSGT01030000234566.e.b.b.a.i.b ENSGT01030000234618.D.a ENSGT00950000182996.b.a.a.b.d.a.f.a.a.a.b.a.a.b ENSGT00940000157792.k ENSGT00390000016695.t ENSGT00940000159187.d ENSGT00730000111086.a ENSGT00940000157960.j ENSGT00950000182980.a.b.b.a.b.b.a.a ENSGT01050000244902.b.d.c ENSGT00940000164695.a.i ENSGT00940000167260.b ENSGT00940000165900.f ENSGT00940000159399.b ENSGT00970000193421.A.z ENSGT01030000234635.a.b.a.b.b.a.b.e.a ##22 ENSGT00940000161295.cb ENSGT00390000012863.a ENSGT00940000160655.fb.b.a ENSGT00940000153259.a.a.b.e ENSGT00950000183171.B.x.b ENSGT00940000158923.f.b ENSGT00940000155947.a.c ENSGT00390000017040.n.b ENSGT00940000155349.c.b ENSGT00940000159485.d ENSGT00390000017583.h ENSGT00950000183095.a.b.a.b.a.z.a ENSGT00950000183024.a.b.b.e ENSGT01100000263537.b.b.c.b.l.b ENSGT00940000162008.c Common carp reference MODERN SPECIES 26 nars2 (ENSCCRG00000081751) ENSCCRG00000052500 GAB2 (ENSCCRG00000077537) ENSCCRG00000073630 sgcg (ENSCCRG00000081030) ENSCCRG00000025092 slc37a4a (ENSCCRG00000025085) ENSCCRG00000074284 calm3a (ENSCCRG00000077426) ENSCCRG00000044563 ppm1na (ENSCCRG00000016244) rtn2a (ENSCCRG00000016248) rhoub (ENSCCRG00000016251) rab4b (ENSCCRG00000016263) ap2s1 (ENSCCRG00000016318) ARHGAP35 (ENSCCRG00000067045) ##22 NPAS1 (ENSCCRG00000049191) tmem160 (ENSCCRG00000080603) ENSCCRG00000029313 tnfrsf19 (ENSCCRG00000029306) ENSCCRG00000063070 bach1a (ENSCCRG00000042110) ENSCCRG00000074872 cadm2b (ENSCCRG00000001774) ENSCCRG00000066952 ENSCCRG00000047980 ENSCCRG00000069438 ENSCCRG00000080308 slc1a5 (ENSCCRG00000063552) fkrp (ENSCCRG00000065093) STRN4 (ENSCCRG00000029640) Golden-line barbel MODERN SPECIES 2141 ARHGAP35 (ENSSGRG00000018721) ##22 Cyprininae ANCESTRAL SPECIES 340 ENSGT00940000154730.b.a.b ENSGT01030000234566.e.b.b.a.i.a ENSGT00940000157792.l ENSGT00390000016695.s ENSGT00940000159187.c ENSGT00940000153761.B ENSGT00730000111086.b ENSGT00950000182980.a.b.b.a.b.b.a.b ENSGT01050000244902.b.d.d ENSGT00940000167255 ENSGT00940000164695.a.j ENSGT00940000167260.a ENSGT00940000165900.e ENSGT00940000159399.a ENSGT00970000193421.A.y ENSGT01030000234635.a.b.a.b.b.a.b.e.b ##22 ENSGT00940000161295.db ENSGT00390000012863.b ENSGT00940000160655.fb.b.b Cyprininae_a ANCESTRAL SPECIES 153 ENSGT00990000210146 ENSGT01030000234618.D.b ENSGT00940000157792.l ENSGT00390000016695.s ENSGT00940000159187.c ENSGT00940000153761.B ENSGT00730000111086.b ENSGT00950000182980.a.b.b.a.b.b.a.b ENSGT01050000244902.b.d.d ENSGT00940000167255 ENSGT00940000164695.a.j ENSGT00940000167260.a ENSGT00940000165900.e ENSGT00940000159399.a ENSGT00970000193421.A.y ENSGT01030000234635.a.b.a.b.b.a.b.e.b ##22 ENSGT00390000012863.b ENSGT00940000160655.fb.a ENSGT00940000153259.a.a.b.f ENSGT00950000183171.B.x.a ENSGT00940000158923.f.a.b ENSGT00940000155947.a.d ENSGT00390000017040.n.a ENSGT00940000155349.c.a ENSGT00940000159485.c ENSGT00390000017583.g ENSGT00950000183095.a.b.a.b.a.z.b ENSGT00950000183024.a.b.b.f ENSGT01100000263537.b.b.c.b.l.a ENSGT00940000162008.d ENSGT00940000154390.B.b Common carp reference MODERN SPECIES 39 ENSCCRG00000079602 nars2 (ENSCCRG00000058508) GAB2 (ENSCCRG00000025102) ENSCCRG00000068170 sgcg (ENSCCRG00000025095) trappc4 (ENSCCRG00000048708) slc37a4a (ENSCCRG00000048695) calm3a (ENSCCRG00000017811) ENSCCRG00000074361 ENSCCRG00000035232 ppm1na (ENSCCRG00000074336) rtn2a (ENSCCRG00000035237) rhoub (ENSCCRG00000035240) rab4b (ENSCCRG00000065295) ap2s1 (ENSCCRG00000082233) ENSCCRG00000071465 ##22 tmem160 (ENSCCRG00000070899) ENSCCRG00000002499 tnfrsf19 (ENSCCRG00000033192) ENSCCRG00000033211 ENSCCRG00000033193 cadm2b (ENSCCRG00000033042) ENSCCRG00000061767 ENSCCRG00000018082 ENSCCRG00000017517 fkrp (ENSCCRG00000074412) slc1a5 (ENSCCRG00000066758) STRN4 (ENSCCRG00000029620) PRKD2 (ENSCCRG00000011423) ENSCCRG00000074595 si:dkey-202l22.3 (ENSCCRG00000001684) Golden-line barbel MODERN SPECIES 155 rab4b (ENSSGRG00000052651) ap2s1 (ENSSGRG00000052653) ap2s1 (ENSSGRG00000052659) ARHGAP35 (ENSSGRG00000052661) ##22 NPAS1 (ENSSGRG00000052662) ENSSGRG00000052664 tnfrsf19 (ENSSGRG00000052665) MIPEP (ENSSGRG00000052667) ENSSGRG00000052668 cadm2b (ENSSGRG00000052669) GBE1 (ENSSGRG00000052680) SLC7A1 (ENSSGRG00000052914) slc1a5 (ENSSGRG00000052945) fkrp (ENSSGRG00000052949) STRN4 (ENSSGRG00000052955) PRKD2 (ENSSGRG00000052975) gpr184 (ENSSGRG00000053131) si:dkey-202l22.3 (ENSSGRG00000053132) ENSSGRG00000053133 Goldfish MODERN SPECIES 34 tenm4 (ENSCARG00000060411) ENSCARG00000061613 GAB2 (ENSCARG00000061619) sgcg (ENSCARG00000061671) trappc4 (ENSCARG00000061749) slc37a4a (ENSCARG00000061823) calm3a (ENSCARG00000061836) PTGIR (ENSCARG00000061886) ENSCARG00000061894 ppm1na (ENSCARG00000061911) rtn2a (ENSCARG00000061932) rhoub (ENSCARG00000061958) rab4b (ENSCARG00000061971) ENSCARG00000062033 ap2s1 (ENSCARG00000062039) ARHGAP35 (ENSCARG00000062124) ##22 NPAS1 (ENSCARG00000062140) tmem160 (ENSCARG00000062186) ENSCARG00000062213 timd4 (ENSCARG00000062260) trmt9b (ENSCARG00000062269) PDS5B (ENSCARG00000062370) ENSCARG00000064804 ENSCARG00000064820 inpp5ka (ENSCARG00000064935) tekt1 (ENSCARG00000065187) mag (ENSCARG00000065202) ENSCARG00000065222 tmem106ba (ENSCARG00000065226) arl4aa (ENSCARG00000065233) etv1 (ENSCARG00000065257) Cyprininae ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.b.f ##22 Cyprininae_a ANCESTRAL SPECIES 233 ENSGT00940000159400.l ENSGT00940000163913.k ENSGT00990000204023.d.b ENSGT00990000204023.c.d ENSGT00940000164853.a.a.b ENSGT01100000263491.a.b.b.c.a.b.b.a ENSGT00940000166953.a ENSGT00940000177976.c ENSGT00940000159470.e.b ENSGT00950000182929.A.db.b ENSGT00950000183199.a.a.w.a ENSGT01030000234556.a.a.a.b.b ENSGT01030000234556.b.b.a.b.d ENSGT00940000155418.a.a.b ENSGT00940000159197.j.b.b ENSGT01030000234635.a.b.a.b.b.a.b.f ##22 Golden-line barbel DUPLICATION Golden-line barbel MODERN SPECIES 261 ENSSGRG00000045793 ENSSGRG00000045794 slc12a9 (ENSSGRG00000045798) ENSSGRG00000045833 gucy2d (ENSSGRG00000045848) si:ch211-284e13.5 (ENSSGRG00000045955) ENSSGRG00000045956 ENSSGRG00000045957 ENSSGRG00000045960 apoa1a (ENSSGRG00000045962) pafah1b2 (ENSSGRG00000045963) mpzl2b (ENSSGRG00000045964) scn4bb (ENSSGRG00000045965) ENSSGRG00000045966 tmprss13b (ENSSGRG00000045967) ARHGAP35 (ENSSGRG00000045968) ##22 ins (ENSSGRG00000045969) Golden-line barbel MODERN SPECIES 5167 ENSSGRG00000004313 ##22 Common carp reference MODERN SPECIES 15 slc12a9 (ENSCCRG00000001111) ENSCCRG00000074565 si:ch211-284e13.9 (ENSCCRG00000082512) ENSCCRG00000060995 gucy2d (ENSCCRG00000019714) si:ch211-284e13.5 (ENSCCRG00000077563) ENSCCRG00000053747 si:dkey-111e8.4 (ENSCCRG00000030059) ENSCCRG00000072044 apoa1a (ENSCCRG00000062651) pafah1b2 (ENSCCRG00000049154) mpzl2b (ENSCCRG00000049152) scn4bb (ENSCCRG00000062966) tmprss4b (ENSCCRG00000078189) tmprss13b (ENSCCRG00000073102) ENSCCRG00000082853 ##22 ENSCCRG00000075444 panx1b (ENSCCRG00000023474) myo1ca (ENSCCRG00000051374) ENSCCRG00000051682 ENSCCRG00000026948 dpf2 (ENSCCRG00000051324) cdc42ep2 (ENSCCRG00000056427) ENSCCRG00000050514 ENSCCRG00000050725 ENSCCRG00000062177 ENSCCRG00000007695 ENSCCRG00000058781 ENSCCRG00000007998 zgc:163098 (ENSCCRG00000066974) ENSCCRG00000060651 Osteoglossiformes ANCESTRAL SPECIES 85 ENSGT00940000166868 ENSGT00950000182980.a.b.b.a.b.b ENSGT00940000164695.b ENSGT00940000160599 ENSGT00940000159399 ENSGT00970000193421.A ENSGT00940000154553.a.a ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160655.kb ENSGT00940000160655.jb ENSGT00940000159485 ENSGT00390000017583 ENSGT00950000183095.a.b.a.b.a ENSGT00950000183024.a.b.b.k ENSGT01100000263537.b.b.c.b ENSGT00530000063867.a.b ENSGT00530000063867.a.a ENSGT00940000162008 ENSGT01030000234517.H.a ENSGT00940000164834.a ENSGT01030000234613.b.a.b P. kingsleyae MODERN SPECIES 139 ENSPKIG00000010483 ENSPKIG00000010447 RELB (ENSPKIG00000010400) mrpl28 (ENSPKIG00000010370) gemin7 (ENSPKIG00000010356) bmp16 (ENSPKIG00000010340) ppp1r37 (ENSPKIG00000010325) CALM3 (ENSPKIG00000010298) PTGIR (ENSPKIG00000010282) ENSPKIG00000010248 ppm1na (ENSPKIG00000010212) rtn2a (ENSPKIG00000010174) rhoub (ENSPKIG00000010162) rab4b (ENSPKIG00000010138) ap2s1 (ENSPKIG00000010112) ARHGAP35 (ENSPKIG00000010061) ##22 NPAS1 (ENSPKIG00000009969) tmem160 (ENSPKIG00000009924) ENSPKIG00000009905 slc1a5 (ENSPKIG00000009870) fkrp (ENSPKIG00000009846) PRKD2 (ENSPKIG00000009768) gpr184 (ENSPKIG00000009735) si:dkey-202l22.3 (ENSPKIG00000009725) Asian bonytongue MODERN SPECIES 19 ENSSFOG00015030568 OGT (ENSSFOG00015004499) plp1b (ENSSFOG00015004596) nlgn3a (ENSSFOG00015004656) GRIA3 (ENSSFOG00015004701) THOC2 (ENSSFOG00015004767) STAG2 (ENSSFOG00015004879) acsl4b (ENSSFOG00015004988) MID2 (ENSSFOG00015005025) ENSSFOG00015029870 ENSSFOG00015005072 ENSSFOG00015005100 ppm1nb (ENSSFOG00015005140) rtn2b (ENSSFOG00015032049) RAB4B (ENSSFOG00015005173) ARHGAP35 (ENSSFOG00015005210) ##22 ENSSFOG00015026092 slc1a5 (ENSSFOG00015005253) PRKD2 (ENSSFOG00015005283) DSCAML1 (ENSSFOG00015005337) ENSSFOG00015005441 scn4bb (ENSSFOG00015005459) zgc:153990 (ENSSFOG00015005526) ENSSFOG00015005535 alkbh6 (ENSSFOG00015005576) ENSSFOG00015029428 fpgt (ENSSFOG00015005604) tppp2 (ENSSFOG00015032320) TAGLN (ENSSFOG00015005647) ENSSFOG00015005665 ENSSFOG00015005699 Reedfish MODERN SPECIES socs9 (ENSECRG00000000013) SAMD4B (ENSECRG00000000014) GMFG (ENSECRG00000000015) ENSECRG00000000016 lrfn1 (ENSECRG00000000017) zgc:172282 (ENSECRG00000000018) ENSECRG00000000019 ENSECRG00000000020 ppp5c (ENSECRG00000000021) ENSECRG00000000022 ENSECRG00000000023 dhx34 (ENSECRG00000000024) si:dkey-202l22.3 (ENSECRG00000000026) rab4b (ENSECRG00000000027) ap2s1 (ENSECRG00000000028) ARHGAP35 (ENSECRG00000000029) ##22 NPAS1 (ENSECRG00000000030) ENSECRG00000000031 tmem160 (ENSECRG00000000032) ENSECRG00000000033 ppm1nb (ENSECRG00000000034) ENSECRG00000000035 ENSECRG00000000036 PTGIR (ENSECRG00000000037) bmp16 (ENSECRG00000000038) gemin7 (ENSECRG00000000039) SYMPK (ENSECRG00000000040) RSPH4A (ENSECRG00000000041) ENSECRG00000000042 ENSECRG00000000043 tbcb (ENSECRG00000000044) Sarcopterygii ANCESTRAL SPECIES 598 ENSGT00970000193421.A ENSGT00940000154553.a.a ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 Tetrapoda ANCESTRAL SPECIES 71 ENSGT00940000153887.B ENSGT00940000177245 ENSGT00530000064222.a ENSGT00390000003107.b ENSGT00940000161006 ENSGT00940000158785 ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT00940000154553.a.a ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00390000012948.a ENSGT00390000008756 ENSGT00650000093443 ENSGT00940000156119 Anura ANCESTRAL SPECIES 86 ENSGT00940000156765 ENSGT00390000009795 ENSGT01100000263537.b.b.c.a.a ENSGT00940000153887.B ENSGT00530000064222.a ENSGT00390000003107.b ENSGT00940000161006.b ENSGT00390000017608 ENSGT00940000175813 ENSGT00940000158785 ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 Frog MODERN SPECIES 8 vasp (ENSXETG00000018239) eml1 (ENSXETG00000018242) gipr (ENSXETG00000018255) fbxo46 (ENSXETG00000047788) qpctl (ENSXETG00000018261) pglyrp1 (ENSXETG00000018262) snrpd2 (ENSXETG00000002173) ENSXETG00000018263 meiosin (ENSXETG00000048668) ppp5c (ENSXETG00000018265) ptgir (ENSXETG00000018270) dact3 (ENSXETG00000037153) fkrp (ENSXETG00000018274) slc1a5 (ENSXETG00000018275) ap2s1 (ENSXETG00000018283) arhgap35 (ENSXETG00000018284) ##22 atp11c (ENSXETG00000018290) mcf2 (ENSXETG00000018322) f9 (ENSXETG00000003472) fgf13 (ENSXETG00000037165) ENSXETG00000041730 zic3 (ENSXETG00000024458) gpr101 (ENSXETG00000048252) ENSXETG00000037129 ENSXETG00000003479 rbmx (ENSXETG00000003481) arhgef6 (ENSXETG00000017497) cd40lg (ENSXETG00000044841) ENSXETG00000043654 tmtops (ENSXETG00000017493) vgll1 (ENSXETG00000019748) Amniota ANCESTRAL SPECIES 80 ENSGT00940000161745 ENSGT00940000158785 ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT00940000154553.a.a ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00530000063461.B ENSGT00940000160230 ENSGT00940000153892.A ENSGT00940000160667 ENSGT00940000155666.d ENSGT00390000018039 ENSGT00940000157454 ENSGT00650000093443.x ENSGT00390000012948.a ENSGT00390000008756 ENSGT00940000163913 Sauria ANCESTRAL SPECIES 54 ENSGT00390000017608 ENSGT00940000167604 ENSGT00940000161745 ENSGT00940000158785 ENSGT00940000166445 ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT00940000154553.a.a ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00650000093443.w.a ENSGT01090000260345 ENSGT00940000156119 ENSGT00960000190608 Lepidosauria ANCESTRAL SPECIES 58 ENSGT01030000234555.a.b ENSGT00390000017608 ENSGT00940000167604 ENSGT00940000161745 ENSGT00940000158785 ENSGT00940000166445 ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00650000093443.w.a ENSGT01090000260345 ENSGT00940000156119 ENSGT00960000190608 ENSGT00940000160719 ENSGT00940000163335 ENSGT00940000161957 ENSGT00940000164418 ENSGT01040000240503.C ENSGT00440000037640 ENSGT00970000194069 ENSGT00730000111686 ENSGT00940000165970 tuatara MODERN SPECIES 1028 ENSSPUG00000002682 SYMPK (ENSSPUG00000002789) DMWD (ENSSPUG00000002869) DMPK (ENSSPUG00000002917) SIX5 (ENSSPUG00000002955) ENSSPUG00000002994 SNRPD2 (ENSSPUG00000003011) HIF3A (ENSSPUG00000003020) PPP5C (ENSSPUG00000003033) ENSSPUG00000003046 PTGIR (ENSSPUG00000003066) STRN4 (ENSSPUG00000003253) FKRP (ENSSPUG00000003278) SLC1A5 (ENSSPUG00000003287) AP2S1 (ENSSPUG00000003316) ARHGAP35 (ENSSPUG00000003327) ##22 NPAS1 (ENSSPUG00000003351) TMEM160 (ENSSPUG00000003376) Episquamata ANCESTRAL SPECIES 7 ENSGT01030000234555.a.b ENSGT00390000017608 ENSGT00940000167604 ENSGT00940000161745.d ENSGT00940000158785 ENSGT00940000166445 ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00390000012863 ENSGT00650000093443.w.a ENSGT01090000260345 ENSGT00940000156119 ENSGT00960000190608 Laterata ANCESTRAL SPECIES 17 ENSGT01030000234555.a.b ENSGT00390000017608 ENSGT00940000167604 ENSGT00940000161745.d ENSGT00940000158785 ENSGT00940000166445 ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00390000012863 ENSGT00650000093443.w.a ENSGT01090000260345 ENSGT00940000156119 ENSGT00550000075063 ENSGT00940000165739 ENSGT00940000160719 ENSGT00940000163335 ENSGT00940000159557 ENSGT00510000048626 ENSGT00940000156844.a ENSGT00940000155478 ENSGT00950000182843.a.a.a.b.a.b ENSGT00940000175315 ENSGT00640000091563.b Common wall lizard MODERN SPECIES 16 ENSPMRG00000008617 ENSPMRG00000008624 ENSPMRG00000008628 HIF3A (ENSPMRG00000008634) PPP5C (ENSPMRG00000008661) ENSPMRG00000008686 CALM3 (ENSPMRG00000008690) PTGIR (ENSPMRG00000008692) GNG8 (ENSPMRG00000008695) DACT3 (ENSPMRG00000008698) PRKD2 (ENSPMRG00000008708) STRN4 (ENSPMRG00000008722) FKRP (ENSPMRG00000008731) SLC1A5 (ENSPMRG00000008739) AP2S1 (ENSPMRG00000008748) ARHGAP35 (ENSPMRG00000008755) ##22 ENSPMRG00000008759 TMEM160 (ENSPMRG00000008765) ENSPMRG00000008769 ENSPMRG00000008772 EHD2 (ENSPMRG00000008778) NOP53 (ENSPMRG00000008785) ENSPMRG00000008791 ENSPMRG00000008794 SELENOW (ENSPMRG00000008798) ENSPMRG00000008802 CRX (ENSPMRG00000008809) ENSPMRG00000008813 DMAC2 (ENSPMRG00000008823) B3GNT8 (ENSPMRG00000008827) ENSPMRG00000008833 Argentine black and white tegu MODERN SPECIES 59 ENSSMRG00000015316 SNRPD2 (ENSSMRG00000015318) ENSSMRG00000015320 HIF3A (ENSSMRG00000015322) PPP5C (ENSSMRG00000015324) ENSSMRG00000015326 CALM3 (ENSSMRG00000015327) PTGIR (ENSSMRG00000015328) GNG8 (ENSSMRG00000015330) DACT3 (ENSSMRG00000015331) PRKD2 (ENSSMRG00000015332) STRN4 (ENSSMRG00000015333) FKRP (ENSSMRG00000015334) SLC1A5 (ENSSMRG00000015335) AP2S1 (ENSSMRG00000015336) ARHGAP35 (ENSSMRG00000015337) ##22 ENSSMRG00000015338 TMEM160 (ENSSMRG00000015339) ENSSMRG00000015340 ENSSMRG00000015341 TBCB (ENSSMRG00000015342) ENSSMRG00000015343 POLR2I (ENSSMRG00000015344) ENSSMRG00000015345 WDR62 (ENSSMRG00000015346) ENSSMRG00000015370 CLIP3 (ENSSMRG00000015371) ALKBH6 (ENSSMRG00000015372) ENSSMRG00000015373 ENSSMRG00000015376 CAPNS1 (ENSSMRG00000015377) Toxicofera ANCESTRAL SPECIES 22 ENSGT01030000234555.a.b ENSGT00390000017608 ENSGT00940000161745.c ENSGT00940000161745.d ENSGT00940000158785 ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00960000193250 ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00390000012863 ENSGT00650000093443.w.a ENSGT01090000260345 ENSGT00940000156119 ENSGT00960000190608 ENSGT00940000160719 ENSGT00940000163335 ENSGT00940000159557 ENSGT00510000048626 ENSGT00940000161957 ENSGT00940000164418 ENSGT01040000240503.C ENSGT00440000037640 ENSGT00940000165970 ENSGT00390000010899.a.b.a.b Lizard MODERN SPECIES 1177 ENSACAG00000035878 STRN4 (ENSACAG00000011808) FKRP (ENSACAG00000011805) SLC1A5 (ENSACAG00000011724) AP2S1 (ENSACAG00000011682) ENSACAG00000035417 ARHGAP35 (ENSACAG00000011599) ##22 ENSACAG00000042379 ENSACAG00000011553 ENSACAG00000034878 ENSACAG00000043130 Elapidae DUPLICATION Elapidae ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.b.g ##22 Elapidae_a ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.b.g ##22 Blue-lipped sea krait MODERN SPECIES 2073 ENSLLTG00000001408 ENSLLTG00000001400 ##22 Elapidae ANCESTRAL SPECIES 9 ENSGT00570000080851 ENSGT01030000234555.a.b ENSGT00390000017608 ENSGT00940000161745.d ENSGT00940000158785 ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00960000193250 ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b.h ##22 ENSGT00390000012863 ENSGT01090000260345 ENSGT00940000156119 ENSGT00960000190608 ENSGT00940000159359 ENSGT00940000160719 ENSGT00940000163335 ENSGT00940000159557 ENSGT00510000048626 ENSGT00940000161957 ENSGT00940000164418 ENSGT01040000240503.C ENSGT00440000037640 ENSGT00940000165970 ENSGT00390000010899.a.b.a.a.b Indian cobra MODERN SPECIES 11 ENSNNAG00000016590 ENSNNAG00000016595 ENSNNAG00000016598 SNRPD2 (ENSNNAG00000016603) HIF3A (ENSNNAG00000016614) PPP5C (ENSNNAG00000016638) CALM3 (ENSNNAG00000016648) PTGIR (ENSNNAG00000016669) GNG8 (ENSNNAG00000016675) DACT3 (ENSNNAG00000016684) ENSNNAG00000016692 STRN4 (ENSNNAG00000016700) FKRP (ENSNNAG00000016704) SLC1A5 (ENSNNAG00000016706) AP2S1 (ENSNNAG00000016712) ARHGAP35 (ENSNNAG00000016715) ##22 TBCB (ENSNNAG00000016719) ENSNNAG00000016728 POLR2I (ENSNNAG00000016734) ENSNNAG00000016741 ENSNNAG00000016752 CLIP3 (ENSNNAG00000016768) ALKBH6 (ENSNNAG00000016788) CAPNS1 (ENSNNAG00000016820) ENSNNAG00000017001 ENSNNAG00000017011 ENSNNAG00000017021 ENSNNAG00000017030 CHP2 (ENSNNAG00000017039) ENSNNAG00000017056 TIMM50 (ENSNNAG00000017061) Elapidae_a ANCESTRAL SPECIES 33 ENSGT00570000080851 ENSGT01030000234555.a.b ENSGT00390000017608 ENSGT00940000161745.d ENSGT00940000158785 ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00960000193250 ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b.h ##22 ENSGT00390000012863 ENSGT01090000260345 ENSGT00940000156119 ENSGT00550000075063 ENSGT00940000159359 ENSGT00940000160719 ENSGT00940000163335 ENSGT00940000159557 ENSGT00510000048626 Acanthophiinae ANCESTRAL SPECIES 32 ENSGT00940000162237.a ENSGT01030000234555.a.b ENSGT00390000017608 ENSGT00940000161745.d ENSGT00940000158785 ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00960000193250 ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b.h ##22 ENSGT00390000012863 ENSGT01090000260345 ENSGT00940000156119 ENSGT00550000075063 ENSGT00940000159359 ENSGT00940000160719 ENSGT00940000163335 ENSGT00940000159557 ENSGT00510000048626 ENSGT00940000161957 ENSGT00940000164418 Mainland tiger snake MODERN SPECIES 838 ARHGAP35 (ENSNSUG00000005198) ##22 Eastern brown snake MODERN SPECIES 77 SIX5 (ENSPTXG00000016732) ENSPTXG00000016729 ENSPTXG00000016727 SNRPD2 (ENSPTXG00000016725) HIF3A (ENSPTXG00000016722) PPP5C (ENSPTXG00000016719) ENSPTXG00000016715 CALM3 (ENSPTXG00000016713) PTGIR (ENSPTXG00000016711) GNG8 (ENSPTXG00000016708) PRKD2 (ENSPTXG00000016695) ENSPTXG00000016693 FKRP (ENSPTXG00000016691) SLC1A5 (ENSPTXG00000016684) AP2S1 (ENSPTXG00000016680) ARHGAP35 (ENSPTXG00000016676) ##22 TMEM160 (ENSPTXG00000016674) ENSPTXG00000016669 ENSPTXG00000016667 TBCB (ENSPTXG00000016663) ENSPTXG00000016660 ENSPTXG00000016657 ENSPTXG00000016654 ENSPTXG00000016653 CLIP3 (ENSPTXG00000016650) ALKBH6 (ENSPTXG00000016647) CAPNS1 (ENSPTXG00000016644) ENSPTXG00000016642 CHP2 (ENSPTXG00000016638) ENSPTXG00000016634 Blue-lipped sea krait MODERN SPECIES 2475 ARHGAP35 (ENSLLTG00000007655) ##22 Archelosauria ANCESTRAL SPECIES 33 ENSGT00940000167604 ENSGT00940000161745 ENSGT00940000158785 ENSGT00940000166445 ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00960000193250 ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT00940000154553.a.a ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00650000093443.w.a ENSGT01090000260345 ENSGT00940000156119 ENSGT00550000075063 ENSGT00940000160719 ENSGT00940000163335 ENSGT00940000159557 ENSGT00510000048626 ENSGT00940000156844.a ENSGT00940000155478 ENSGT00950000182843.a.a.a.b.a.b ENSGT00940000154550.b ENSGT00640000091563.b Cryptodira ANCESTRAL SPECIES 35 ENSGT00390000017608 ENSGT00940000167604 ENSGT00940000161745 ENSGT00940000158785 ENSGT00940000166445 ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00960000193250 ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00650000093443.w.a ENSGT01090000260345 ENSGT00940000156119 ENSGT00550000075063 ENSGT00940000160719 ENSGT00940000163335 ENSGT00940000159557 ENSGT00510000048626 ENSGT00940000156844.a ENSGT00940000155478 ENSGT00950000182843.a.a.a.b.a.b ENSGT00940000154550.b ENSGT00640000091563.b Chinese turtle MODERN SPECIES 787 PRKD2 (ENSPSIG00000016551) STRN4 (ENSPSIG00000017359) FKRP (ENSPSIG00000005846) SLC1A5 (ENSPSIG00000006408) AP2S1 (ENSPSIG00000007321) ARHGAP35 (ENSPSIG00000007433) ##22 TMEM160 (ENSPSIG00000008093) ENSPSIG00000001108 Testudinoidea DUPLICATION Testudinoidea ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.b.i ##22 Testudinidae ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.b.i ##22 Abingdon island giant tortoise MODERN SPECIES 1173 AP2S1 (ENSCABG00000002477) ARHGAP35 (ENSCABG00000002479) ##22 ENSCABG00000002480 ENSCABG00000002481 ENSCABG00000002482 ATF1 (ENSCABG00000002483) Testudinoidea ANCESTRAL SPECIES 30 ENSGT00390000017608 ENSGT00940000167604.d ENSGT00940000161745 ENSGT00940000158785 ENSGT00940000166445 ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183136.a.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485.m ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b.j ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00650000093443.w.a ENSGT01090000260345 ENSGT00940000156119 ENSGT00550000075063 ENSGT00940000160719 ENSGT00940000163335 ENSGT00940000159557 ENSGT00510000048626 ENSGT00940000156844.a ENSGT00940000155478.n ENSGT00940000161957 ENSGT00940000164418 ENSGT01040000240503.C Emydidae ANCESTRAL SPECIES 45 ENSGT01030000234555.a.b ENSGT00390000017608 ENSGT00940000167604.d ENSGT00940000161745 ENSGT00940000158785 ENSGT00940000164310 ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183136.a.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485.m ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b.j ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00650000093443.w.a ENSGT01090000260345 ENSGT00940000156119 ENSGT00940000160719 ENSGT00940000163335 ENSGT00510000048626 ENSGT00940000156844.a ENSGT00940000155478.n ENSGT00940000161957 ENSGT00940000155478.m.a ENSGT00950000182843.a.a.a.b.a.b ENSGT00940000154550.b ENSGT00640000091563.b painted turtle MODERN SPECIES 879 AP2S1 (ENSCPBG00000005245) ARHGAP35 (ENSCPBG00000005254) ##22 NPAS1 (ENSCPBG00000005264) TMEM160 (ENSCPBG00000005281) ENSCPBG00000005289 TBCB (ENSCPBG00000005327) ENSCPBG00000006709 POLR2I (ENSCPBG00000006726) ENSCPBG00000006734 WDR62 (ENSCPBG00000006762) ENSCPBG00000006808 ENSCPBG00000006820 ALKBH6 (ENSCPBG00000006841) ENSCPBG00000006852 ENSCPBG00000006859 ENSCPBG00000006865 ENSCPBG00000006872 Three-toed box turtle MODERN SPECIES 252 ENSTMTG00000007873 SNRPD2 (ENSTMTG00000007862) ENSTMTG00000007849 HIF3A (ENSTMTG00000007833) PPP5C (ENSTMTG00000007809) PTGIR (ENSTMTG00000007799) GNG8 (ENSTMTG00000007787) ENSTMTG00000007764 ENSTMTG00000007750 PRKD2 (ENSTMTG00000007272) STRN4 (ENSTMTG00000006957) FKRP (ENSTMTG00000006927) ENSTMTG00000006909 ENSTMTG00000006896 AP2S1 (ENSTMTG00000006878) ARHGAP35 (ENSTMTG00000006861) ##22 ENSTMTG00000006847 ENSTMTG00000006831 ENSTMTG00000006820 ENSTMTG00000006812 TBCB (ENSTMTG00000006797) ENSTMTG00000006777 POLR2I (ENSTMTG00000006766) ENSTMTG00000006749 ENSTMTG00000006713 ENSTMTG00000006693 ENSTMTG00000006564 ALKBH6 (ENSTMTG00000006538) ENSTMTG00000006514 ENSTMTG00000006498 ENSTMTG00000006479 Testudinidae ANCESTRAL SPECIES 36 ENSGT00390000017608 ENSGT00940000167604.d ENSGT00940000161745 ENSGT00940000158785 ENSGT00940000166445 ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183136.a.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485.m ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b.j ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00650000093443.w.a ENSGT01090000260345 ENSGT00940000156119 ENSGT00550000075063 ENSGT00940000160719 ENSGT00940000163335 ENSGT00940000159557 ENSGT00510000048626 ENSGT00940000156844.a ENSGT00940000155478.m.a ENSGT00950000182843.a.a.a.b.a.b ENSGT00940000154550.b ENSGT00940000161957 Abingdon island giant tortoise MODERN SPECIES 464 ENSCABG00000007731 ##22 NPAS1 (ENSCABG00000007735) ENSCABG00000007738 ENSCABG00000007739 TBCB (ENSCABG00000007740) ENSCABG00000007742 POLR2I (ENSCABG00000007746) ENSCABG00000007749 ENSCABG00000007751 CLIP3 (ENSCABG00000007752) ALKBH6 (ENSCABG00000007802) ENSCABG00000007804 ENSCABG00000007807 ENSCABG00000007809 ENSCABG00000007815 ENSCABG00000007825 Goode s thornscrub tortoise MODERN SPECIES 134 SNRPD2 (ENSGEVG00005008411) ENSGEVG00005008379 ENSGEVG00005008365 PPP5C (ENSGEVG00005007903) ENSGEVG00005007705 CALM3 (ENSGEVG00005007668) PTGIR (ENSGEVG00005007642) GNG8 (ENSGEVG00005007618) DACT3 (ENSGEVG00005007584) ENSGEVG00005007568 PRKD2 (ENSGEVG00005007536) STRN4 (ENSGEVG00005006716) FKRP (ENSGEVG00005006541) SLC1A5 (ENSGEVG00005006522) AP2S1 (ENSGEVG00005006508) ARHGAP35 (ENSGEVG00005006490) ##22 ENSGEVG00005006465 TMEM160 (ENSGEVG00005006452) ENSGEVG00005006429 ENSGEVG00005006415 TBCB (ENSGEVG00005006394) ENSGEVG00005006349 ENSGEVG00005006319 ENSGEVG00005006247 ENSGEVG00005006193 ENSGEVG00005006178 CLIP3 (ENSGEVG00005006093) ALKBH6 (ENSGEVG00005006054) ENSGEVG00005005983 ENSGEVG00005005946 ENSGEVG00005005915 Archosauria ANCESTRAL SPECIES 90 ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00970000193421.A ENSGT00940000154553.a.a ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000156119 ENSGT00550000075063 ENSGT00940000160719 ENSGT00940000163335 Aves ANCESTRAL SPECIES 85 ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00970000193421.A ENSGT00940000154553.a.a ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000156119 ENSGT00550000075063 ENSGT00940000160719 ENSGT00940000163335 African ostrich MODERN SPECIES 784 ARHGAP35 (ENSSCUG00000011624) ##22 Neognathae ANCESTRAL SPECIES 49 ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00970000193421.A ENSGT00940000154553.a.a ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000156119.v ENSGT00550000075063 ENSGT00940000160719 ENSGT00940000163335 ENSGT00530000063461.B ENSGT00940000160230 ENSGT00940000153892.A ENSGT00390000018039 ENSGT00940000157454 ENSGT00650000093443.x ENSGT00940000162258.z ENSGT00390000011275 ENSGT00940000160551 ENSGT00950000182970.C ENSGT00950000182772.A.a.a.b Neognathae_b ANCESTRAL SPECIES 46 ENSGT00390000017583 ENSGT00970000193421.A ENSGT00940000154553.a.a ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000156119.v ENSGT00550000075063 ENSGT00940000160719 ENSGT00940000163335 ENSGT00530000063461.B ENSGT00940000160230 ENSGT00940000153892.A ENSGT00390000018039 ENSGT00940000157454 ENSGT00650000093443.x ENSGT00940000162258.z ENSGT00390000011275 ENSGT00940000160551 ENSGT00950000182970.C ENSGT00950000182772.A.a.a.b Passeriformes ANCESTRAL SPECIES 61 ENSGT00970000193421.A ENSGT00940000154553.a.a ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000156119.v ENSGT00530000063461.B ENSGT00940000160230 ENSGT00940000153892.A ENSGT00390000018039 ENSGT00940000157454 ENSGT00650000093443.x ENSGT00390000011275 ENSGT00940000160551 ENSGT00950000182970.C Passeriformes_d ANCESTRAL SPECIES 56 ENSGT00970000193421.A ENSGT00940000154553.a.a ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000156119.v ENSGT00530000063461.B ENSGT00940000160230 ENSGT00940000153892.A ENSGT00390000018039 ENSGT00940000157454 ENSGT00650000093443.x ENSGT00390000011275 ENSGT00940000160551 ENSGT00950000182970.C Passeriformes_g ANCESTRAL SPECIES 76 ENSGT00970000193421.A ENSGT00940000154553.a.a ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000156119.v ENSGT00530000063461.B ENSGT00940000160230 ENSGT00940000153892.A ENSGT00390000018039 ENSGT00940000157454 ENSGT00390000011275 ENSGT00940000160551 ENSGT00950000182970.C Passeroidea ANCESTRAL SPECIES 79 ENSGT00970000193421.A ENSGT00940000154553.a.a ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000156119.v ENSGT00530000063461.B ENSGT00940000160230 ENSGT00940000153892.A ENSGT00390000018039 ENSGT00940000157454 ENSGT00390000011275 ENSGT00940000160551 ENSGT00950000182970.C Zebra finch MODERN SPECIES 80 ENSTGUG00000018785 AP2S1 (ENSTGUG00000027482) ENSTGUG00000022958 B9D2 (ENSTGUG00000027327) ENSTGUG00000021836 ENSTGUG00000022450 ENSTGUG00000024439 ENSTGUG00000022549 ENSTGUG00000019851 ENSTGUG00000021426 SPTBN4 (ENSTGUG00000026942) ENSTGUG00000019327 ENSTGUG00000023435 ENSTGUG00000015127 ENSTGUG00000017067 ENSTGUG00000000642 ##22 ENSTGUG00000025223 ENSTGUG00000027729 ENSTGUG00000024195 ENSTGUG00000026453 ENSTGUG00000021279 ENSTGUG00000025049 ENSTGUG00000025743 CLASRP (ENSTGUG00000026126) ENSTGUG00000029551 ENSTGUG00000024482 ENSTGUG00000022148 ERCC1 (ENSTGUG00000026421) PPP1R13L (ENSTGUG00000029072) SNRPD2 (ENSTGUG00000028090) ERCC2 (ENSTGUG00000027406) Neognathae_c ANCESTRAL SPECIES 62 ENSGT00390000017583 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000156119.v ENSGT00550000075063 ENSGT00940000160719 ENSGT00940000163335 Kakapo MODERN SPECIES 68 ENSSHBG00005013034 DMAC2 (ENSSHBG00005013024) BCKDHA (ENSSHBG00005013007) EXOSC5 (ENSSHBG00005012977) B9D2 (ENSSHBG00005012949) TGFB1 (ENSSHBG00005001122) CCDC97 (ENSSHBG00005001120) HNRNPUL1 (ENSSHBG00005001118) ENSSHBG00005014950 AXL (ENSSHBG00005014939) RAB4B (ENSSHBG00005014929) SNRPA (ENSSHBG00005014922) ACTMAP (ENSSHBG00005014916) FKRP (ENSSHBG00005014911) AP2S1 (ENSSHBG00005014905) ARHGAP35 (ENSSHBG00005014898) ##22 TBCB (ENSSHBG00005014890) POLR2I (ENSSHBG00005014879) THAP8 (ENSSHBG00005014874) Golden eagle DUPLICATION Golden eagle MODERN SPECIES 60 ENSACCG00020016906 THAP8 (ENSACCG00020016903) ENSACCG00020016901 POLR2I (ENSACCG00020016900) TBCB (ENSACCG00020016897) TMEM160 (ENSACCG00020016895) STRN4 (ENSACCG00020016893) AP2S1 (ENSACCG00020016889) ARHGAP35 (ENSACCG00020016888) ##22 ENSACCG00020016886 ##22 Golden eagle MODERN SPECIES 60 ENSACCG00020016906 THAP8 (ENSACCG00020016903) ENSACCG00020016901 POLR2I (ENSACCG00020016900) TBCB (ENSACCG00020016897) TMEM160 (ENSACCG00020016895) STRN4 (ENSACCG00020016893) AP2S1 (ENSACCG00020016889) ARHGAP35 (ENSACCG00020016888) ##22 ENSACCG00020016886 ##22 Galloanserae ANCESTRAL SPECIES 48 ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000156119.v ENSGT00390000018039 ENSGT00940000157454 ENSGT00650000093443.x ENSGT00940000156765 ENSGT00390000009795 ENSGT00530000064222.a ENSGT00940000164973 ENSGT00900000142292 ENSGT00940000158721 ENSGT01100000263564.a ENSGT00530000063950.a.b ENSGT00550000075007 ENSGT00940000160011.h ENSGT00940000160348 Phasianidae ANCESTRAL SPECIES 36 ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000156119.v ENSGT00390000018039 ENSGT00940000157454 ENSGT00650000093443.x ENSGT00940000156765 ENSGT00390000009795 ENSGT00940000157969 ENSGT00940000161850 ENSGT00530000064222.a ENSGT00940000164973.b ENSGT00940000158721 ENSGT01100000263564.a ENSGT00530000063950.a.b ENSGT00550000075007 ENSGT00940000160011.h Phasianidae_b ANCESTRAL SPECIES 66 ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000156119.v ENSGT00390000018039 ENSGT00940000157454 Chicken MODERN SPECIES 31 SNRPD2 (ENSGALG00010010885) ENSGALG00010010869 STRN4 (ENSGALG00010010862) FKRP (ENSGALG00010010845) AP2S1 (ENSGALG00010010816) ARHGAP35 (ENSGALG00010009020) ##22 ENSGALG00010008991 ENSGALG00010008983 PPP1R37 (ENSGALG00010008969) ENSGALG00010008952 ENSGALG00010008943 VASP (ENSGALG00010008932) OPA3 (ENSGALG00010008921) ENSGALG00010008903 FBXO46 (ENSGALG00010008888) LRFN3 (ENSGALG00010008859) DHX34 (ENSGALG00010008830) ENSGALG00010008814 CCDC9 (ENSGALG00010008782) SAE1 (ENSGALG00010008762) ZC3H4 (ENSGALG00010008708) Japanese quail MODERN SPECIES 67 ARHGAP35 (ENSCJPG00005003496) ##22 ENSCJPG00005003495 ENSCJPG00005003490 PPP1R37 (ENSCJPG00005003489) ENSCJPG00005003488 Anatidae ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.b ##22 Duck MODERN SPECIES 1821 ARHGAP35 (ENSAPLG00000002888) ##22 Pink-footed goose MODERN SPECIES 689 ARHGAP35 (ENSABRG00000005455) ##22 Mammalia ANCESTRAL SPECIES 75 ENSGT00950000183135.A.a ENSGT00940000154133.B ENSGT00940000161006 ENSGT00940000171396 ENSGT00940000161745 ENSGT00940000158785 ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 Platypus MODERN SPECIES 16 FOXA3 (ENSOANG00000042207) ENSOANG00000042668 NOVA2 (ENSOANG00000040576) ENSOANG00000049441 ENSOANG00000038949 PPP5C (ENSOANG00000011946) ENSOANG00000036554 ENSOANG00000049385 ENSOANG00000041777 ENSOANG00000046092 PRKD2 (ENSOANG00000049147) STRN4 (ENSOANG00000049730) FKRP (ENSOANG00000039322) SLC1A5 (ENSOANG00000048663) AP2S1 (ENSOANG00000047764) ARHGAP35 (ENSOANG00000003425) ##22 ENSOANG00000040596 TMEM160 (ENSOANG00000048641) ENSOANG00000037686 DHX34 (ENSOANG00000000569) ENSOANG00000037837 ENSOANG00000012979 CCDC9 (ENSOANG00000049974) ENSOANG00000039018 SAE1 (ENSOANG00000004331) ENSOANG00000044784 PPP1R14A (ENSOANG00000049843) ENSOANG00000045122 YIF1B (ENSOANG00000042948) KCNK6 (ENSOANG00000040689) LTBP4 (ENSOANG00000015106) Theria ANCESTRAL SPECIES 27 ENSGT00940000161740 ENSGT00940000154133.B ENSGT00940000171396 ENSGT00940000161006 ENSGT00940000161745 ENSGT00940000158785 ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 ENSGT00940000159112.b Marsupialia ANCESTRAL SPECIES 20 ENSGT00940000154133.B ENSGT00940000171396 ENSGT00940000161006 ENSGT01100000263534.b.k.a.a.b.a.c.a.b ENSGT00940000161745 ENSGT00940000158785 ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 ENSGT00940000159112.b Opossum MODERN SPECIES 3 ENSMODG00000002366 ENSMODG00000028671 ENSMODG00000002387 ENSMODG00000002676 ENSMODG00000006074 ENSMODG00000021137 PPP5C (ENSMODG00000009228) ENSMODG00000009222 PTGIR (ENSMODG00000009211) GNG8 (ENSMODG00000009206) DACT3 (ENSMODG00000047059) STRN4 (ENSMODG00000009136) FKRP (ENSMODG00000023714) SLC1A5 (ENSMODG00000009108) AP2S1 (ENSMODG00000009083) ARHGAP35 (ENSMODG00000009066) ##22 NPAS1 (ENSMODG00000009053) TMEM160 (ENSMODG00000047936) ZC3H4 (ENSMODG00000008978) SAE1 (ENSMODG00000008952) ENSMODG00000008934 CCDC9 (ENSMODG00000008926) ENSMODG00000008857 C5AR2 (ENSMODG00000007252) DHX34 (ENSMODG00000008850) SELENOW (ENSMODG00000023715) ENSMODG00000023716 KPTN (ENSMODG00000008827) NAPA (ENSMODG00000008817) ZNF541 (ENSMODG00000008779) NOP53 (ENSMODG00000008721) Marsupialia_b ANCESTRAL SPECIES 4 ENSGT00940000154133.B ENSGT00940000171396 ENSGT00940000161006 ENSGT01100000263534.b.k.a.a.b.a.c.a.b ENSGT00940000161745 ENSGT00940000158785 ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 ENSGT00940000159112.b Tasmanian devil MODERN SPECIES 2 ENSSHAG00000016613 ENSSHAG00000022799 ENSSHAG00000028193 ENSSHAG00000025662 ENSSHAG00000024489 ENSSHAG00000003533 ENSSHAG00000004128 ENSSHAG00000028119 ENSSHAG00000030771 DACT3 (ENSSHAG00000031611) ENSSHAG00000020505 ENSSHAG00000025928 PRKD2 (ENSSHAG00000021404) SLC1A5 (ENSSHAG00000026042) AP2S1 (ENSSHAG00000026500) ARHGAP35 (ENSSHAG00000006639) ##22 NPAS1 (ENSSHAG00000024261) ZC3H4 (ENSSHAG00000028166) SAE1 (ENSSHAG00000002813) ENSSHAG00000001420 C5AR2 (ENSSHAG00000027588) ENSSHAG00000029825 ENSSHAG00000030420 MEIS3 (ENSSHAG00000021311) ENSSHAG00000024846 NAPA (ENSSHAG00000022077) ZNF541 (ENSSHAG00000003056) ENSSHAG00000026122 NOP53 (ENSSHAG00000023645) ENSSHAG00000002757 ENSSHAG00000003069 Diprotodontia ANCESTRAL SPECIES 58 ENSGT00940000154133.B ENSGT00940000171396 ENSGT00940000161006 ENSGT01100000263534.b.k.a.a.b.a.c.a.b ENSGT00940000161745 ENSGT00940000158785 ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 ENSGT00940000159112.b Diprotodontia_a ANCESTRAL SPECIES 56 ENSGT00940000154133.B ENSGT00940000171396 ENSGT00940000161006 ENSGT01100000263534.b.k.a.a.b.a.c.a.b ENSGT00940000161745 ENSGT00940000158785 ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 ENSGT00940000159112.b Common wonbat DUPLICATION Common wonbat MODERN SPECIES 1158 ENSVURG00010021538 ENSVURG00010021540 ENSVURG00010021545 ENSVURG00010021566 ENSVURG00010021638 ENSVURG00010021653 ENSVURG00010021665 ENSVURG00010021676 ENSVURG00010021679 ENSVURG00010021686 ENSVURG00010021751 ENSVURG00010022263 ENSVURG00010022272 ENSVURG00010022289 ENSVURG00010022632 ENSVURG00010022649 ##22 ENSVURG00010022660 ENSVURG00010022668 ENSVURG00010022671 ENSVURG00010022683 ENSVURG00010022689 CCDC9 (ENSVURG00010022694) ENSVURG00010022698 C5AR2 (ENSVURG00010022700) DHX34 (ENSVURG00010022703) MEIS3 (ENSVURG00010022726) SLC8A2 (ENSVURG00010002773) ENSVURG00010002786 NAPA (ENSVURG00010002799) ZNF541 (ENSVURG00010002837) BICRA (ENSVURG00010002965) Common wonbat MODERN SPECIES 1158 ENSVURG00010004231 ENSVURG00010004241 ENSVURG00010004245 ENSVURG00010004291 ENSVURG00010004727 ENSVURG00010004809 ENSVURG00010005854 ENSVURG00010005861 ENSVURG00010005864 ENSVURG00010005880 ENSVURG00010006016 ENSVURG00010007823 ENSVURG00010010327 ENSVURG00010010368 ENSVURG00010011314 ENSVURG00010011318 ##22 ENSVURG00010011325 ENSVURG00010011344 ENSVURG00010011360 ENSVURG00010011397 koala MODERN SPECIES 345 ENSPCIG00000023945 ENSPCIG00000009955 HIF3A (ENSPCIG00000006138) PPP5C (ENSPCIG00000006141) CALM3 (ENSPCIG00000009353) PTGIR (ENSPCIG00000009351) GNG8 (ENSPCIG00000009350) DACT3 (ENSPCIG00000009348) PRKD2 (ENSPCIG00000025780) STRN4 (ENSPCIG00000025779) FKRP (ENSPCIG00000025778) SLC1A5 (ENSPCIG00000025777) ENSPCIG00000025776 ARHGAP35 (ENSPCIG00000025775) ##22 NPAS1 (ENSPCIG00000032390) TMEM160 (ENSPCIG00000028139) ZC3H4 (ENSPCIG00000028138) SAE1 (ENSPCIG00000028135) ENSPCIG00000028133 CCDC9 (ENSPCIG00000028131) C5AR1 (ENSPCIG00000000822) ENSPCIG00000000869 DHX34 (ENSPCIG00000000889) MEIS3 (ENSPCIG00000016488) SLC8A2 (ENSPCIG00000016491) KPTN (ENSPCIG00000016494) NAPA (ENSPCIG00000016508) ZNF541 (ENSPCIG00000007543) BICRA (ENSPCIG00000016713) Wallaby MODERN SPECIES 6451 ARHGAP35 (ENSMEUG00000013621) ##22 Eutheria ANCESTRAL SPECIES 29 ENSGT00390000009557.C ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 ENSGT00940000159112.b Boreoeutheria ANCESTRAL SPECIES 5 ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00990000206928 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a Euarchontoglires ANCESTRAL SPECIES 5 ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Primates ANCESTRAL SPECIES 15 ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Haplorrhini ANCESTRAL SPECIES 16 ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Tarsier MODERN SPECIES 5492 AP2S1 (ENSTSYG00000008474) ARHGAP35 (ENSTSYG00000006365) ##22 Simiiformes ANCESTRAL SPECIES 16 ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00910000148361 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a Platyrrhini ANCESTRAL SPECIES 20 ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00710000107236 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT00940000158721 ENSGT00940000161057 ENSGT00910000148361 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Cebidae ANCESTRAL SPECIES 8 ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 ENSGT00940000159112.b Cebidae_a ANCESTRAL SPECIES 20 ENSGT00940000161006 ENSGT00390000009557.C.c ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.f.b.a ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT01100000263564.a.g ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 ENSGT00940000159112.b ENSGT00940000159256 Capuchin MODERN SPECIES 266 ENSCCAG00000033630 PTGIR (ENSCCAG00000021110) GNG8 (ENSCCAG00000029845) DACT3 (ENSCCAG00000008006) PRKD2 (ENSCCAG00000032043) STRN4 (ENSCCAG00000034066) FKRP (ENSCCAG00000015087) SLC1A5 (ENSCCAG00000033717) AP2S1 (ENSCCAG00000028431) ARHGAP35 (ENSCCAG00000022601) ##22 ENSCCAG00000021097 NPAS1 (ENSCCAG00000032406) TMEM160 (ENSCCAG00000031011) ZC3H4 (ENSCCAG00000037597) SAE1 (ENSCCAG00000031780) ENSCCAG00000026596 CCDC9 (ENSCCAG00000028908) C5AR1 (ENSCCAG00000035091) DHX34 (ENSCCAG00000028675) MEIS3 (ENSCCAG00000003816) SLC8A2 (ENSCCAG00000014965) KPTN (ENSCCAG00000027753) NAPA (ENSCCAG00000033321) ZNF541 (ENSCCAG00000037140) BICRA (ENSCCAG00000026467) Bolivian squirrel monkey MODERN SPECIES 169 IGFL1 (ENSSBOG00000027173) ENSSBOG00000034581 ENSSBOG00000025247 HIF3A (ENSSBOG00000032075) PPP5C (ENSSBOG00000034724) PNMA8A (ENSSBOG00000010196) CALM3 (ENSSBOG00000028097) PTGIR (ENSSBOG00000035755) GNG8 (ENSSBOG00000031506) DACT3 (ENSSBOG00000033658) PRKD2 (ENSSBOG00000035342) STRN4 (ENSSBOG00000023134) FKRP (ENSSBOG00000019333) SLC1A5 (ENSSBOG00000030282) AP2S1 (ENSSBOG00000032625) ARHGAP35 (ENSSBOG00000001405) ##22 NPAS1 (ENSSBOG00000033921) TMEM160 (ENSSBOG00000029169) ZC3H4 (ENSSBOG00000030914) SAE1 (ENSSBOG00000021374) BBC3 (ENSSBOG00000022164) CCDC9 (ENSSBOG00000030220) C5AR1 (ENSSBOG00000035229) DHX34 (ENSSBOG00000026147) ENSSBOG00000026965 SLC8A2 (ENSSBOG00000033085) KPTN (ENSSBOG00000027367) NAPA (ENSSBOG00000035455) ZNF541 (ENSSBOG00000022783) BICRA (ENSSBOG00000022848) EHD2 (ENSSBOG00000025594) Marmoset MODERN SPECIES 14 HIF3A (ENSCJAG00000012019) PPP5C (ENSCJAG00000011891) CCDC8 (ENSCJAG00000074769) PNMA8C (ENSCJAG00000075292) PNMA8B (ENSCJAG00000011875) CALM3 (ENSCJAG00000078405) PTGIR (ENSCJAG00000011850) GNG8 (ENSCJAG00000011841) DACT3 (ENSCJAG00000042823) PRKD2 (ENSCJAG00000047142) STRN4 (ENSCJAG00000011749) FKRP (ENSCJAG00000011741) SLC1A5 (ENSCJAG00000011717) ENSCJAG00000011710 ENSCJAG00000072578 ARHGAP35 (ENSCJAG00000011701) ##22 NPAS1 (ENSCJAG00000076811) TMEM160 (ENSCJAG00000082760) ZC3H4 (ENSCJAG00000011601) SAE1 (ENSCJAG00000011565) ENSCJAG00000083080 CCDC9 (ENSCJAG00000011548) INAFM1 (ENSCJAG00000074475) C5AR1 (ENSCJAG00000073054) C5AR2 (ENSCJAG00000011534) ENSCJAG00000072119 DHX34 (ENSCJAG00000011504) MEIS3 (ENSCJAG00000011475) SLC8A2 (ENSCJAG00000070619) KPTN (ENSCJAG00000011460) NAPA (ENSCJAG00000042205) Mas night monkey MODERN SPECIES 1284 ENSANAG00000005209 HIF3A (ENSANAG00000036285) PPP5C (ENSANAG00000038336) CCDC8 (ENSANAG00000027675) PNMA8A (ENSANAG00000029356) CALM3 (ENSANAG00000035148) PTGIR (ENSANAG00000030542) GNG8 (ENSANAG00000023974) DACT3 (ENSANAG00000031822) PRKD2 (ENSANAG00000031053) STRN4 (ENSANAG00000032421) FKRP (ENSANAG00000019314) SLC1A5 (ENSANAG00000021437) AP2S1 (ENSANAG00000024767) ENSANAG00000022565 ARHGAP35 (ENSANAG00000000237) ##22 NPAS1 (ENSANAG00000036771) TMEM160 (ENSANAG00000026707) ZC3H4 (ENSANAG00000023963) SAE1 (ENSANAG00000023379) ENSANAG00000037922 CCDC9 (ENSANAG00000020361) INAFM1 (ENSANAG00000035853) C5AR1 (ENSANAG00000031163) DHX34 (ENSANAG00000038287) MEIS3 (ENSANAG00000037100) ENSANAG00000034504 SLC8A2 (ENSANAG00000033218) KPTN (ENSANAG00000030248) NAPA (ENSANAG00000029662) ZNF541 (ENSANAG00000034121) Catarrhini ANCESTRAL SPECIES ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007.i.b ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00910000148361 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a Hominoidea ANCESTRAL SPECIES ENSGT00940000158785 ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.b.b ENSGT00940000166143.A.a.b.b.b.b.b.a.a.a ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007.i.b ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00910000148361 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a Hominidae ANCESTRAL SPECIES ENSGT00940000158785 ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.b.b ENSGT00940000166143.A.a.b.b.b.b.b.a.a.a ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007.i.b ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00910000148361 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a Homo/Pan/Gorilla group ANCESTRAL SPECIES ENSGT00940000158785.j ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.b.b ENSGT00940000166143.A.a.b.b.b.b.b.a.a.a ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007.i.b ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00910000148361 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a Homo/Pan group ANCESTRAL SPECIES ENSGT00940000158785.j ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.b.b ENSGT00940000166143.A.a.b.b.b.b.b.a.a.a ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007.i.b ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00910000148361 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a Pan ANCESTRAL SPECIES 9 ENSGT00940000158785.j ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.b.b ENSGT00940000166143.A.a.b.b.b.b.b.a.a.a ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007.i.b ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00910000148361 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a Chimpanzee MODERN SPECIES 10 PPP5C (ENSPTRG00000011181) CCDC8 (ENSPTRG00000011182) PNMA8C (ENSPTRG00000048654) PNMA8A (ENSPTRG00000011183) ENSPTRG00000028962 PPP5D1 (ENSPTRG00000039811) CALM3 (ENSPTRG00000011185) PTGIR (ENSPTRG00000011186) GNG8 (ENSPTRG00000043557) DACT3 (ENSPTRG00000028961) PRKD2 (ENSPTRG00000011190) STRN4 (ENSPTRG00000011192) FKRP (ENSPTRG00000050198) SLC1A5 (ENSPTRG00000011194) AP2S1 (ENSPTRG00000011197) ARHGAP35 (ENSPTRG00000011198) ##22 NPAS1 (ENSPTRG00000011199) TMEM160 (ENSPTRG00000011200) ZC3H4 (ENSPTRG00000011201) SAE1 (ENSPTRG00000011202) BBC3 (ENSPTRG00000011203) CCDC9 (ENSPTRG00000011204) INAFM1 (ENSPTRG00000040861) C5AR1 (ENSPTRG00000028958) C5AR2 (ENSPTRG00000041525) DHX34 (ENSPTRG00000011207) MEIS3 (ENSPTRG00000011208) SLC8A2 (ENSPTRG00000011209) KPTN (ENSPTRG00000011210) NAPA (ENSPTRG00000011211) ZNF541 (ENSPTRG00000011212) Bonobo MODERN SPECIES 10 PPP5C (ENSPPAG00000038591) CCDC8 (ENSPPAG00000042195) PNMA8C (ENSPPAG00000008304) PNMA8A (ENSPPAG00000033527) PNMA8B (ENSPPAG00000042091) ENSPPAG00000035628 CALM3 (ENSPPAG00000037613) PTGIR (ENSPPAG00000041949) GNG8 (ENSPPAG00000033557) ENSPPAG00000041113 PRKD2 (ENSPPAG00000037267) STRN4 (ENSPPAG00000035898) FKRP (ENSPPAG00000037227) SLC1A5 (ENSPPAG00000040539) ENSPPAG00000021619 ARHGAP35 (ENSPPAG00000035858) ##22 NPAS1 (ENSPPAG00000040385) TMEM160 (ENSPPAG00000040416) ZC3H4 (ENSPPAG00000037610) SAE1 (ENSPPAG00000032113) ENSPPAG00000039786 CCDC9 (ENSPPAG00000036850) C5AR1 (ENSPPAG00000027323) C5AR2 (ENSPPAG00000023287) DHX34 (ENSPPAG00000029582) ENSPPAG00000016062 ENSPPAG00000024281 SLC8A2 (ENSPPAG00000030149) KPTN (ENSPPAG00000008738) NAPA (ENSPPAG00000033696) ZNF541 (ENSPPAG00000039092) Human MODERN SPECIES 10 HIF3A (ENSG00000124440) PPP5C (ENSG00000011485) CCDC8 (ENSG00000169515) PNMA8C (ENSG00000277531) PNMA8A (ENSG00000182013) PNMA8B (ENSG00000204851) CALM3 (ENSG00000160014) PTGIR (ENSG00000160013) GNG8 (ENSG00000167414) DACT3 (ENSG00000197380) PRKD2 (ENSG00000105287) STRN4 (ENSG00000090372) FKRP (ENSG00000181027) SLC1A5 (ENSG00000105281) AP2S1 (ENSG00000042753) ARHGAP35 (ENSG00000160007) ##22 NPAS1 (ENSG00000130751) TMEM160 (ENSG00000130748) ZC3H4 (ENSG00000130749) SAE1 (ENSG00000142230) BBC3 (ENSG00000105327) CCDC9 (ENSG00000105321) INAFM1 (ENSG00000257704) C5AR1 (ENSG00000197405) C5AR2 (ENSG00000134830) DHX34 (ENSG00000134815) MEIS3 (ENSG00000105419) SLC8A2 (ENSG00000118160) KPTN (ENSG00000118162) NAPA (ENSG00000105402) ZNF541 (ENSG00000118156) Gorilla MODERN SPECIES 10 HIF3A (ENSGGOG00000007551) PPP5C (ENSGGOG00000007562) CCDC8 (ENSGGOG00000016630) PNMA8C (ENSGGOG00000040172) PNMA8A (ENSGGOG00000001214) ENSGGOG00000015668 ENSGGOG00000024504 CALM3 (ENSGGOG00000000212) PTGIR (ENSGGOG00000013112) ENSGGOG00000043507 PRKD2 (ENSGGOG00000010508) STRN4 (ENSGGOG00000010169) FKRP (ENSGGOG00000043279) SLC1A5 (ENSGGOG00000008792) ENSGGOG00000011254 ARHGAP35 (ENSGGOG00000027302) ##22 NPAS1 (ENSGGOG00000013398) TMEM160 (ENSGGOG00000013410) ZC3H4 (ENSGGOG00000013071) ENSGGOG00000039096 SAE1 (ENSGGOG00000013078) ENSGGOG00000040116 CCDC9 (ENSGGOG00000015097) INAFM1 (ENSGGOG00000027893) C5AR1 (ENSGGOG00000008622) C5AR2 (ENSGGOG00000016452) DHX34 (ENSGGOG00000010037) ENSGGOG00000001093 SLC8A2 (ENSGGOG00000011557) KPTN (ENSGGOG00000000702) NAPA (ENSGGOG00000000703) Orangutan MODERN SPECIES 10 HIF3A (ENSPPYG00000010147) PPP5C (ENSPPYG00000010148) CCDC8 (ENSPPYG00000010150) PNMA8C (ENSPPYG00000037781) PNMA8A (ENSPPYG00000035419) PNMA8B (ENSPPYG00000010152) ENSPPYG00000031172 CALM3 (ENSPPYG00000010154) PTGIR (ENSPPYG00000010155) DACT3 (ENSPPYG00000010157) PRKD2 (ENSPPYG00000010158) STRN4 (ENSPPYG00000010159) FKRP (ENSPPYG00000010160) SLC1A5 (ENSPPYG00000010161) AP2S1 (ENSPPYG00000010163) ARHGAP35 (ENSPPYG00000010164) ##22 NPAS1 (ENSPPYG00000010165) TMEM160 (ENSPPYG00000032917) ZC3H4 (ENSPPYG00000010167) SAE1 (ENSPPYG00000010168) ENSPPYG00000010169 CCDC9 (ENSPPYG00000010170) C5AR1 (ENSPPYG00000032120) C5AR2 (ENSPPYG00000010171) DHX34 (ENSPPYG00000010172) MEIS3 (ENSPPYG00000010173) SLC8A2 (ENSPPYG00000010175) KPTN (ENSPPYG00000010176) NAPA (ENSPPYG00000010177) ZNF541 (ENSPPYG00000010178) BICRA (ENSPPYG00000010179) Gibbon MODERN SPECIES 7 ENSNLEG00000002747 ENSNLEG00000030898 PNMA8C (ENSNLEG00000030454) PNMA8A (ENSNLEG00000002749) PNMA8B (ENSNLEG00000002750) ENSNLEG00000002751 CALM3 (ENSNLEG00000002752) PTGIR (ENSNLEG00000002780) GNG8 (ENSNLEG00000002788) ENSNLEG00000032967 ENSNLEG00000002792 STRN4 (ENSNLEG00000002817) ENSNLEG00000035781 ENSNLEG00000029695 AP2S1 (ENSNLEG00000002895) ARHGAP35 (ENSNLEG00000002923) ##22 NPAS1 (ENSNLEG00000002946) TMEM160 (ENSNLEG00000002960) ZC3H4 (ENSNLEG00000034259) SAE1 (ENSNLEG00000002965) ENSNLEG00000002975 ENSNLEG00000018410 CCDC9 (ENSNLEG00000002990) INAFM1 (ENSNLEG00000018411) C5AR1 (ENSNLEG00000018412) DHX34 (ENSNLEG00000003010) MEIS3 (ENSNLEG00000003031) ENSNLEG00000003082 KPTN (ENSNLEG00000003092) ENSNLEG00000031845 ENSNLEG00000034044 Cercopithecidae ANCESTRAL SPECIES 12 ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007.i.b ENSGT00710000107236 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Cercopithecinae ANCESTRAL SPECIES 1 ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007.j ENSGT00550000075007.i.b.b ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a Vervet Monkey MODERN SPECIES 25 ENSCSAG00000019630 ENSCSAG00000019631 CCDC8 (ENSCSAG00000019632) PNMA8A (ENSCSAG00000003053) PNMA8B (ENSCSAG00000019633) ENSCSAG00000019634 CALM3 (ENSCSAG00000003050) PTGIR (ENSCSAG00000003043) GNG8 (ENSCSAG00000003040) DACT3 (ENSCSAG00000003035) PRKD2 (ENSCSAG00000003028) STRN4 (ENSCSAG00000003022) FKRP (ENSCSAG00000019635) ENSCSAG00000003016 ENSCSAG00000019636 ARHGAP35 (ENSCSAG00000003015) ##22 NPAS1 (ENSCSAG00000003006) TMEM160 (ENSCSAG00000002993) ZC3H4 (ENSCSAG00000002989) SAE1 (ENSCSAG00000002984) BBC3 (ENSCSAG00000002981) CCDC9 (ENSCSAG00000002974) ENSCSAG00000019637 C5AR1 (ENSCSAG00000002973) C5AR2 (ENSCSAG00000019638) DHX34 (ENSCSAG00000002965) MEIS3 (ENSCSAG00000002950) SLC8A2 (ENSCSAG00000002946) KPTN (ENSCSAG00000002944) NAPA (ENSCSAG00000002939) ENSCSAG00000002936 Cercopithecinae_a ANCESTRAL SPECIES 3 ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007.j ENSGT00390000002767 ENSGT00550000075007.i.b.a ENSGT00710000107236 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 Cercopithecinae_b ANCESTRAL SPECIES 23 ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007.i.b.a ENSGT00710000107236 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Olive baboon MODERN SPECIES 12 PPP5C (ENSPANG00000002966) ENSPANG00000029483 CCDC8 (ENSPANG00000020252) PNMA8C (ENSPANG00000033741) PNMA8A (ENSPANG00000018286) PNMA8B (ENSPANG00000039504) ENSPANG00000015474 PTGIR (ENSPANG00000019287) GNG8 (ENSPANG00000029260) DACT3 (ENSPANG00000021672) PRKD2 (ENSPANG00000008367) STRN4 (ENSPANG00000017664) FKRP (ENSPANG00000003944) SLC1A5 (ENSPANG00000024227) AP2S1 (ENSPANG00000031161) ARHGAP35 (ENSPANG00000018862) ##22 NPAS1 (ENSPANG00000014704) TMEM160 (ENSPANG00000004010) ZC3H4 (ENSPANG00000021115) ENSPANG00000005314 ENSPANG00000014625 CCDC9 (ENSPANG00000014927) INAFM1 (ENSPANG00000044654) C5AR1 (ENSPANG00000035543) C5AR2 (ENSPANG00000038913) DHX34 (ENSPANG00000011774) ENSPANG00000049850 ZNF541 (ENSPANG00000009364) NAPA (ENSPANG00000023325) KPTN (ENSPANG00000018368) SLC8A2 (ENSPANG00000012944) Cercopithecinae_d ANCESTRAL SPECIES 9 ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007.i.b.a ENSGT00710000107236 ENSGT00530000063950.a.b ENSGT01100000263564.a.g ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 ENSGT00940000159112.b ENSGT00940000159256 Sooty mangabey MODERN SPECIES 228 PPP5C (ENSCATG00000031479) ENSCATG00000021418 CCDC8 (ENSCATG00000030098) PNMA8C (ENSCATG00000016093) PNMA8A (ENSCATG00000037135) ENSCATG00000011877 CALM3 (ENSCATG00000036622) PTGIR (ENSCATG00000044691) GNG8 (ENSCATG00000038798) DACT3 (ENSCATG00000028958) PRKD2 (ENSCATG00000012657) STRN4 (ENSCATG00000041998) FKRP (ENSCATG00000015421) SLC1A5 (ENSCATG00000041986) AP2S1 (ENSCATG00000030501) ARHGAP35 (ENSCATG00000025751) ##22 NPAS1 (ENSCATG00000044490) TMEM160 (ENSCATG00000017019) ZC3H4 (ENSCATG00000039046) SAE1 (ENSCATG00000041175) ENSCATG00000044506 CCDC9 (ENSCATG00000023465) C5AR1 (ENSCATG00000032999) DHX34 (ENSCATG00000032316) MEIS3 (ENSCATG00000044534) SLC8A2 (ENSCATG00000019815) KPTN (ENSCATG00000031555) NAPA (ENSCATG00000039365) ZNF541 (ENSCATG00000036460) BICRA (ENSCATG00000043087) EHD2 (ENSCATG00000013287) Drill MODERN SPECIES 254 HIF3A (ENSMLEG00000030835) PPP5C (ENSMLEG00000043928) ENSMLEG00000029399 CCDC8 (ENSMLEG00000038841) PNMA8C (ENSMLEG00000012922) PNMA8A (ENSMLEG00000037418) ENSMLEG00000038995 CALM3 (ENSMLEG00000040728) PTGIR (ENSMLEG00000039111) GNG8 (ENSMLEG00000041963) ENSMLEG00000042860 PRKD2 (ENSMLEG00000041161) STRN4 (ENSMLEG00000039813) SLC1A5 (ENSMLEG00000039768) AP2S1 (ENSMLEG00000034145) ARHGAP35 (ENSMLEG00000042586) ##22 ENSMLEG00000038871 ZC3H4 (ENSMLEG00000007946) ENSMLEG00000042254 ENSMLEG00000038746 CCDC9 (ENSMLEG00000042193) C5AR1 (ENSMLEG00000034392) DHX34 (ENSMLEG00000041860) MEIS3 (ENSMLEG00000034525) SLC8A2 (ENSMLEG00000041982) KPTN (ENSMLEG00000038643) NAPA (ENSMLEG00000044028) ZNF541 (ENSMLEG00000029328) BICRA (ENSMLEG00000030433) EHD2 (ENSMLEG00000044265) ENSMLEG00000032475 Macaca ANCESTRAL SPECIES 12 ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007.j ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 ENSGT00940000159112.b Pig-tailed macaque MODERN SPECIES 551 PPP5C (ENSMNEG00000029801) ENSMNEG00000039917 CCDC8 (ENSMNEG00000035328) PNMA8C (ENSMNEG00000013860) PNMA8A (ENSMNEG00000028579) ENSMNEG00000035646 CALM3 (ENSMNEG00000038313) PTGIR (ENSMNEG00000037044) GNG8 (ENSMNEG00000029400) DACT3 (ENSMNEG00000005969) PRKD2 (ENSMNEG00000038676) STRN4 (ENSMNEG00000042544) FKRP (ENSMNEG00000013306) SLC1A5 (ENSMNEG00000040803) AP2S1 (ENSMNEG00000036216) ARHGAP35 (ENSMNEG00000029940) ##22 NPAS1 (ENSMNEG00000038438) TMEM160 (ENSMNEG00000026327) ZC3H4 (ENSMNEG00000039406) ENSMNEG00000024262 ENSMNEG00000009958 CCDC9 (ENSMNEG00000029240) C5AR1 (ENSMNEG00000040235) DHX34 (ENSMNEG00000038649) MEIS3 (ENSMNEG00000045404) SLC8A2 (ENSMNEG00000032344) KPTN (ENSMNEG00000035130) NAPA (ENSMNEG00000033334) ZNF541 (ENSMNEG00000031984) BICRA (ENSMNEG00000045550) EHD2 (ENSMNEG00000029528) Macaca_a ANCESTRAL SPECIES 1 ENSGT00940000158785 ENSGT00390000015797.c.b ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007.j ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 ENSGT00940000159112.b Rhesus MODERN SPECIES 10 PPP5C (ENSMMUG00000000217) ENSMMUG00000000218 CCDC8 (ENSMMUG00000003190) PNMA8C (ENSMMUG00000061795) PNMA8A (ENSMMUG00000005827) ENSMMUG00000053552 CALM3 (ENSMMUG00000017921) PTGIR (ENSMMUG00000017922) DACT3 (ENSMMUG00000017924) ENSMMUG00000051115 PRKD2 (ENSMMUG00000017927) STRN4 (ENSMMUG00000017930) FKRP (ENSMMUG00000028743) SLC1A5 (ENSMMUG00000022163) AP2S1 (ENSMMUG00000000833) ARHGAP35 (ENSMMUG00000011332) ##22 NPAS1 (ENSMMUG00000011330) TMEM160 (ENSMMUG00000057454) ZC3H4 (ENSMMUG00000014709) SAE1 (ENSMMUG00000009506) ENSMMUG00000055893 ENSMMUG00000012466 CCDC9 (ENSMMUG00000003075) C5AR1 (ENSMMUG00000009278) C5AR2 (ENSMMUG00000009277) DHX34 (ENSMMUG00000009275) MEIS3 (ENSMMUG00000013009) SLC8A2 (ENSMMUG00000014718) KPTN (ENSMMUG00000014723) NAPA (ENSMMUG00000014727) ZNF541 (ENSMMUG00000014729) Crab-eating macaque MODERN SPECIES 10 HIF3A (ENSMFAG00000025583) PPP5C (ENSMFAG00000034179) ENSMFAG00000036651 CCDC8 (ENSMFAG00000041847) PNMA8C (ENSMFAG00000029984) PNMA8A (ENSMFAG00000006014) ENSMFAG00000035539 CALM3 (ENSMFAG00000036156) ENSMFAG00000002915 ENSMFAG00000044510 ENSMFAG00000030779 PRKD2 (ENSMFAG00000045883) STRN4 (ENSMFAG00000035843) SLC1A5 (ENSMFAG00000044927) AP2S1 (ENSMFAG00000022670) ARHGAP35 (ENSMFAG00000041192) ##22 NPAS1 (ENSMFAG00000018045) ENSMFAG00000001653 ENSMFAG00000048737 SAE1 (ENSMFAG00000046126) BBC3 (ENSMFAG00000033464) CCDC9 (ENSMFAG00000002381) C5AR1 (ENSMFAG00000064601) C5AR2 (ENSMFAG00000064310) MEIS3 (ENSMFAG00000034069) SLC8A2 (ENSMFAG00000037527) KPTN (ENSMFAG00000039746) NAPA (ENSMFAG00000000053) ZNF541 (ENSMFAG00000008705) EHD2 (ENSMFAG00000045476) NOP53 (ENSMFAG00000045103) Rhinopithecus ANCESTRAL SPECIES 16 ENSGT00940000158785 ENSGT00390000015797.c.b.d ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT01100000263497.B.f ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007.i.b ENSGT00710000107236 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 ENSGT00940000159112.b Golden snub-nosed monkey MODERN SPECIES 2027 HIF3A (ENSRROG00000032780) PPP5C (ENSRROG00000027318) ENSRROG00000038440 PNMA8C (ENSRROG00000027253) PNMA8A (ENSRROG00000013610) ENSRROG00000035990 CALM3 (ENSRROG00000033594) PTGIR (ENSRROG00000035701) ENSRROG00000045208 DACT3 (ENSRROG00000044269) PRKD2 (ENSRROG00000034944) STRN4 (ENSRROG00000042099) FKRP (ENSRROG00000007497) SLC1A5 (ENSRROG00000038480) AP2S1 (ENSRROG00000045451) ARHGAP35 (ENSRROG00000035853) ##22 NPAS1 (ENSRROG00000043828) TMEM160 (ENSRROG00000043669) ZC3H4 (ENSRROG00000032920) SAE1 (ENSRROG00000031746) ENSRROG00000040712 CCDC9 (ENSRROG00000025974) INAFM1 (ENSRROG00000036821) C5AR1 (ENSRROG00000034629) DHX34 (ENSRROG00000042872) MEIS3 (ENSRROG00000029017) SLC8A2 (ENSRROG00000045566) KPTN (ENSRROG00000036495) NAPA (ENSRROG00000037389) ZNF541 (ENSRROG00000044146) BICRA (ENSRROG00000026604) Black snub-nosed monkey MODERN SPECIES 477 IGFL1 (ENSRBIG00000041594) HIF3A (ENSRBIG00000037340) PPP5C (ENSRBIG00000043486) ENSRBIG00000041650 PNMA8C (ENSRBIG00000007752) PNMA8A (ENSRBIG00000032652) PNMA8B (ENSRBIG00000043852) ENSRBIG00000040350 PTGIR (ENSRBIG00000039814) GNG8 (ENSRBIG00000040120) ENSRBIG00000037645 PRKD2 (ENSRBIG00000002509) STRN4 (ENSRBIG00000030977) SLC1A5 (ENSRBIG00000032793) AP2S1 (ENSRBIG00000041720) ARHGAP35 (ENSRBIG00000030306) ##22 Strepsirrhini ANCESTRAL SPECIES 16 ENSGT00940000158785 ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT00940000170636 ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Bushbaby MODERN SPECIES 267 ENSOGAG00000032211 HIF3A (ENSOGAG00000008187) PPP5C (ENSOGAG00000015987) ENSOGAG00000031114 CCDC8 (ENSOGAG00000007549) PNMA8B (ENSOGAG00000028036) CALM3 (ENSOGAG00000014764) PTGIR (ENSOGAG00000030472) GNG8 (ENSOGAG00000029514) DACT3 (ENSOGAG00000030948) PRKD2 (ENSOGAG00000007550) STRN4 (ENSOGAG00000015276) FKRP (ENSOGAG00000026248) SLC1A5 (ENSOGAG00000033704) AP2S1 (ENSOGAG00000033467) ARHGAP35 (ENSOGAG00000033334) ##22 NPAS1 (ENSOGAG00000012829) TMEM160 (ENSOGAG00000033520) ZC3H4 (ENSOGAG00000031123) SAE1 (ENSOGAG00000007650) BBC3 (ENSOGAG00000034738) CCDC9 (ENSOGAG00000015701) INAFM1 (ENSOGAG00000029523) C5AR1 (ENSOGAG00000000133) C5AR2 (ENSOGAG00000033946) DHX34 (ENSOGAG00000002061) MEIS3 (ENSOGAG00000002063) SLC8A2 (ENSOGAG00000029237) KPTN (ENSOGAG00000009999) NAPA (ENSOGAG00000032621) ZNF541 (ENSOGAG00000002397) Lemuriformes ANCESTRAL SPECIES 15 ENSGT00390000009557.C ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Mouse lemur MODERN SPECIES 14 CCDC61 (ENSMICG00000003511) PGLYRP1 (ENSMICG00000033644) IGFL1 (ENSMICG00000028260) HIF3A (ENSMICG00000016033) PPP5C (ENSMICG00000031666) PNMA8A (ENSMICG00000008321) CALM3 (ENSMICG00000028969) PTGIR (ENSMICG00000029447) GNG8 (ENSMICG00000011920) DACT3 (ENSMICG00000042964) PRKD2 (ENSMICG00000015377) STRN4 (ENSMICG00000015400) FKRP (ENSMICG00000043598) SLC1A5 (ENSMICG00000000030) AP2S1 (ENSMICG00000038528) ARHGAP35 (ENSMICG00000037921) ##22 NPAS1 (ENSMICG00000006346) TMEM160 (ENSMICG00000035539) ZC3H4 (ENSMICG00000008786) SAE1 (ENSMICG00000008807) ENSMICG00000008820 CCDC9 (ENSMICG00000008823) C5AR1 (ENSMICG00000045174) DHX34 (ENSMICG00000011585) MEIS3 (ENSMICG00000031566) SLC8A2 (ENSMICG00000030836) KPTN (ENSMICG00000026946) NAPA (ENSMICG00000011599) ZNF541 (ENSMICG00000017737) BICRA (ENSMICG00000028080) EHD2 (ENSMICG00000005571) Lemuriformes_a ANCESTRAL SPECIES 5 ENSGT00390000009557.C ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Coquerels sifaka MODERN SPECIES 568 IGFL1 (ENSPCOG00000013757) HIF3A (ENSPCOG00000022775) ENSPCOG00000019586 PNMA8A (ENSPCOG00000025636) ENSPCOG00000021687 PNMA8B (ENSPCOG00000020660) CALM3 (ENSPCOG00000017236) PTGIR (ENSPCOG00000022780) GNG8 (ENSPCOG00000014293) DACT3 (ENSPCOG00000024045) PRKD2 (ENSPCOG00000018544) STRN4 (ENSPCOG00000028165) FKRP (ENSPCOG00000008360) SLC1A5 (ENSPCOG00000024625) AP2S1 (ENSPCOG00000022192) ARHGAP35 (ENSPCOG00000015788) ##22 NPAS1 (ENSPCOG00000017882) TMEM160 (ENSPCOG00000028665) ZC3H4 (ENSPCOG00000017169) SAE1 (ENSPCOG00000018619) ENSPCOG00000019970 CCDC9 (ENSPCOG00000020816) DHX34 (ENSPCOG00000027801) MEIS3 (ENSPCOG00000024690) SLC8A2 (ENSPCOG00000023795) KPTN (ENSPCOG00000022678) NAPA (ENSPCOG00000014946) ZNF541 (ENSPCOG00000006138) BICRA (ENSPCOG00000017166) EHD2 (ENSPCOG00000010027) NOP53 (ENSPCOG00000016124) Greater bamboo lemur MODERN SPECIES 967 IGFL1 (ENSPSMG00000006068) HIF3A (ENSPSMG00000006129) PPP5C (ENSPSMG00000006234) PNMA8A (ENSPSMG00000006391) PNMA8C (ENSPSMG00000006395) PNMA8B (ENSPSMG00000006398) CALM3 (ENSPSMG00000006412) PTGIR (ENSPSMG00000006434) GNG8 (ENSPSMG00000006435) DACT3 (ENSPSMG00000006455) PRKD2 (ENSPSMG00000006485) STRN4 (ENSPSMG00000006556) FKRP (ENSPSMG00000006706) SLC1A5 (ENSPSMG00000006768) AP2S1 (ENSPSMG00000006938) ARHGAP35 (ENSPSMG00000007009) ##22 Euarchontoglires_A ANCESTRAL SPECIES 7 ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Tree shrew MODERN SPECIES 2902 ARHGAP35 (ENSTBEG00000007281) ##22 ZC3H4 (ENSTBEG00000007530) SAE1 (ENSTBEG00000007969) Glires ANCESTRAL SPECIES 6 ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Rodentia ANCESTRAL SPECIES 8 ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Rodentia_B ANCESTRAL SPECIES 20 ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00940000167173 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a Myomorpha ANCESTRAL SPECIES 20 ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Muroidea ANCESTRAL SPECIES 18 ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Muroidea_A ANCESTRAL SPECIES 20 ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01100000263479.F ENSGT01100000263479.D.a.d.a.b ENSGT01100000263479.D.a.d.a.a ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Cricetidae ANCESTRAL SPECIES 29 ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01100000263479.F ENSGT01100000263479.D.a.d.a.b ENSGT01100000263479.D.a.d.a.a ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Cricetinae ANCESTRAL SPECIES 49 ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01100000263479.F.a ENSGT01100000263479.D.a.d.a.b ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Golden Hamster MODERN SPECIES 836 ENSMAUG00000012799 Hif3a (ENSMAUG00000011784) Ppp5c (ENSMAUG00000015105) Pnma8c (ENSMAUG00000014466) Pnma8b (ENSMAUG00000016505) Calm3 (ENSMAUG00000011584) Ptgir (ENSMAUG00000011407) ENSMAUG00000017644 Prkd2 (ENSMAUG00000005652) Strn4 (ENSMAUG00000016627) Fkrp (ENSMAUG00000018831) Slc1a5 (ENSMAUG00000017083) Ap2s1 (ENSMAUG00000019505) ENSMAUG00000008055 ENSMAUG00000009227 Arhgap35 (ENSMAUG00000000172) ##22 Npas1 (ENSMAUG00000001894) Tmem160 (ENSMAUG00000000893) Zc3h4 (ENSMAUG00000000068) ENSMAUG00000000957 Sae1 (ENSMAUG00000007765) Bbc3 (ENSMAUG00000009202) ENSMAUG00000003963 C5ar1 (ENSMAUG00000003322) C5ar2 (ENSMAUG00000006533) Dhx34 (ENSMAUG00000013394) Meis3 (ENSMAUG00000014202) Slc8a2 (ENSMAUG00000010121) ENSMAUG00000000883 Napa (ENSMAUG00000008333) Zfp541 (ENSMAUG00000012586) Chinese hamster chok1gshd MODERN SPECIES 341 Ppp5c (ENSCGRG00001011160) Ccdc8 (ENSCGRG00001014782) Pnma8c (ENSCGRG00001014071) Pnma8a (ENSCGRG00001015613) Pnma8b (ENSCGRG00001016482) Calm3 (ENSCGRG00001016779) Ptgir (ENSCGRG00001018220) Gng8 (ENSCGRG00001018981) Dact3 (ENSCGRG00001000117) Prkd2 (ENSCGRG00001010601) Strn4 (ENSCGRG00001002623) Slc1a5 (ENSCGRG00001014742) Ap2s1 (ENSCGRG00001015937) Ceacam9 (ENSCGRG00001017245) Ceacam15 (ENSCGRG00001017353) Arhgap35 (ENSCGRG00001013301) ##22 Npas1 (ENSCGRG00001013611) Tmem160 (ENSCGRG00001014723) Zc3h4 (ENSCGRG00001016116) Sae1 (ENSCGRG00001016314) Bbc3 (ENSCGRG00001017224) Ccdc9 (ENSCGRG00001007536) Inafm1 (ENSCGRG00001010104) C5ar1 (ENSCGRG00001012882) C5ar2 (ENSCGRG00001013288) Dhx34 (ENSCGRG00001014694) ENSCGRG00001017077 Meis3 (ENSCGRG00001010748) Slc8a2 (ENSCGRG00001013525) Kptn (ENSCGRG00001017146) Napa (ENSCGRG00001004279) Cricetidae_B ANCESTRAL SPECIES 60 ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01100000263479.F ENSGT01100000263479.D.a.d.a.b ENSGT01100000263479.D.a.d.a.a ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Northern American deer mouse MODERN SPECIES Pnma8a (ENSPEMG00000006770) Pnma8b (ENSPEMG00000025557) Calm3 (ENSPEMG00000027101) Ptgir (ENSPEMG00000016407) Gng8 (ENSPEMG00000015160) Dact3 (ENSPEMG00000016882) Prkd2 (ENSPEMG00000016539) Strn4 (ENSPEMG00000008347) Fkrp (ENSPEMG00000018445) Slc1a5 (ENSPEMG00000013763) Ap2s1 (ENSPEMG00000018089) Ceacam9 (ENSPEMG00000003127) ENSPEMG00000008534 Ceacam15 (ENSPEMG00000016683) ENSPEMG00000031358 Arhgap35 (ENSPEMG00000017349) ##22 Npas1 (ENSPEMG00000014696) Tmem160 (ENSPEMG00000012479) Zc3h4 (ENSPEMG00000009762) Sae1 (ENSPEMG00000012499) Bbc3 (ENSPEMG00000014228) Ccdc9 (ENSPEMG00000015166) Inafm1 (ENSPEMG00000009541) C5ar1 (ENSPEMG00000001838) C5ar2 (ENSPEMG00000010321) Dhx34 (ENSPEMG00000017613) Meis3 (ENSPEMG00000005978) Slc8a2 (ENSPEMG00000002691) Kptn (ENSPEMG00000000792) Napa (ENSPEMG00000009721) Zfp541 (ENSPEMG00000015026) Prairie vole MODERN SPECIES 354 Stxbp5 (ENSMOCG00000020656) Samd5 (ENSMOCG00000000312) Hif3a (ENSMOCG00000019473) Ppp5c (ENSMOCG00000014089) Ccdc8 (ENSMOCG00000020660) Pnma8a (ENSMOCG00000007034) Calm3 (ENSMOCG00000008052) Ptgir (ENSMOCG00000002747) Dact3 (ENSMOCG00000013361) Prkd2 (ENSMOCG00000004684) Strn4 (ENSMOCG00000000602) Fkrp (ENSMOCG00000022172) Slc1a5 (ENSMOCG00000009762) Ap2s1 (ENSMOCG00000019574) Ceacam9 (ENSMOCG00000018285) Arhgap35 (ENSMOCG00000015867) ##22 Npas1 (ENSMOCG00000014578) Tmem160 (ENSMOCG00000016966) Zc3h4 (ENSMOCG00000006492) ENSMOCG00000016346 Bbc3 (ENSMOCG00000017283) Ccdc9 (ENSMOCG00000020124) C5ar2 (ENSMOCG00000004764) Dhx34 (ENSMOCG00000016843) Meis3 (ENSMOCG00000008970) Slc8a2 (ENSMOCG00000005717) ENSMOCG00000013711 Napa (ENSMOCG00000006244) Zfp541 (ENSMOCG00000021811) Bicra (ENSMOCG00000019348) Ehd2 (ENSMOCG00000007010) Murinae ANCESTRAL SPECIES 19 ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01100000263479.F ENSGT01100000263479.D.a.d.a.b ENSGT01100000263479.D.a.d.a.a ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Mus ANCESTRAL SPECIES ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01100000263479.F ENSGT01100000263479.D.a.d.a.b ENSGT01100000263479.D.a.d.a.a ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Mus_A ANCESTRAL SPECIES 1 ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01100000263479.F.c ENSGT01100000263479.D.a.d.a.b ENSGT01100000263479.D.a.d.a.a ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Mus_B ANCESTRAL SPECIES ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01100000263479.F.c ENSGT01100000263479.D.a.d.a.b ENSGT01100000263479.D.a.d.a.a ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Mouse MODERN SPECIES 16 Ccdc8 (ENSMUSG00000041117) Pnma8c (ENSMUSG00000108348) Pnma8a (ENSMUSG00000041141) Pnma8b (ENSMUSG00000070802) Calm3 (ENSMUSG00000019370) Ptgir (ENSMUSG00000043017) Gng8 (ENSMUSG00000063594) Dact3 (ENSMUSG00000078794) Prkd2 (ENSMUSG00000041187) Strn4 (ENSMUSG00000030374) Fkrp (ENSMUSG00000048920) Slc1a5 (ENSMUSG00000001918) Ap2s1 (ENSMUSG00000008036) Ceacam9 (ENSMUSG00000007209) Ceacam15 (ENSMUSG00000078795) Arhgap35 (ENSMUSG00000058230) ##22 Npas1 (ENSMUSG00000001988) Tmem160 (ENSMUSG00000019158) Zc3h4 (ENSMUSG00000059273) Sae1 (ENSMUSG00000052833) Bbc3 (ENSMUSG00000002083) Ccdc9 (ENSMUSG00000041375) Inafm1 (ENSMUSG00000091811) C5ar1 (ENSMUSG00000049130) C5ar2 (ENSMUSG00000074361) Dhx34 (ENSMUSG00000006019) Meis3 (ENSMUSG00000041420) Slc8a2 (ENSMUSG00000030376) Kptn (ENSMUSG00000006021) Napa (ENSMUSG00000006024) Zfp541 (ENSMUSG00000078796) Mus_C ANCESTRAL SPECIES 15 ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01100000263479.F.c ENSGT01100000263479.D.a.d.a.b ENSGT01100000263479.D.a.d.a.a ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Steppe mouse MODERN SPECIES 2772 ENSMSIG00000017638 ENSMSIG00000017649 Ceacam15 (ENSMSIG00000017658) ENSMSIG00000017666 Arhgap35 (ENSMSIG00000017677) ##22 Npas1 (ENSMSIG00000017698) Tmem160 (ENSMSIG00000017740) Zc3h4 (ENSMSIG00000017751) Sae1 (ENSMSIG00000017811) ENSMSIG00000017856 Ccdc9 (ENSMSIG00000017868) C5ar1 (ENSMSIG00000017926) C5ar2 (ENSMSIG00000017934) Dhx34 (ENSMSIG00000017946) Meis3 (ENSMSIG00000018072) Slc8a2 (ENSMSIG00000018129) Kptn (ENSMSIG00000018154) Napa (ENSMSIG00000018190) Zfp541 (ENSMSIG00000018222) Bicra (ENSMSIG00000018350) spretus MODERN SPECIES 16 Ppp5c (MGP_SPRETEiJ_G0030330) Ccdc8 (MGP_SPRETEiJ_G0030329) Pnma8a (MGP_SPRETEiJ_G0030328) Pnma8b (MGP_SPRETEiJ_G0030327) Calm3 (MGP_SPRETEiJ_G0030326) Ptgir (MGP_SPRETEiJ_G0030325) Gng8 (MGP_SPRETEiJ_G0030324) Dact3 (MGP_SPRETEiJ_G0030323) Prkd2 (MGP_SPRETEiJ_G0030322) Strn4 (MGP_SPRETEiJ_G0030321) Fkrp (MGP_SPRETEiJ_G0030320) Slc1a5 (MGP_SPRETEiJ_G0030319) Ap2s1 (MGP_SPRETEiJ_G0030318) Ceacam9 (MGP_SPRETEiJ_G0030317) Ceacam15 (MGP_SPRETEiJ_G0030316) Arhgap35 (MGP_SPRETEiJ_G0030315) ##22 Npas1 (MGP_SPRETEiJ_G0030314) Tmem160 (MGP_SPRETEiJ_G0030313) Zc3h4 (MGP_SPRETEiJ_G0030312) Sae1 (MGP_SPRETEiJ_G0030311) Bbc3 (MGP_SPRETEiJ_G0030310) Ccdc9 (MGP_SPRETEiJ_G0030309) Inafm1 (MGP_SPRETEiJ_G0030308) C5ar1 (MGP_SPRETEiJ_G0030307) C5ar2 (MGP_SPRETEiJ_G0030306) Dhx34 (MGP_SPRETEiJ_G0030305) Slc8a2 (MGP_SPRETEiJ_G0030304) Kptn (MGP_SPRETEiJ_G0030303) Napa (MGP_SPRETEiJ_G0030302) Zfp541 (MGP_SPRETEiJ_G0030301) Bicra (MGP_SPRETEiJ_G0030300) Ryukyu mouse MODERN SPECIES 16 Ppp5c (MGP_CAROLIEiJ_G0029251) Ccdc8 (MGP_CAROLIEiJ_G0029250) Pnma8a (MGP_CAROLIEiJ_G0029249) Pnma8b (MGP_CAROLIEiJ_G0029248) Calm3 (MGP_CAROLIEiJ_G0029247) Ptgir (MGP_CAROLIEiJ_G0029246) Gng8 (MGP_CAROLIEiJ_G0029245) Dact3 (MGP_CAROLIEiJ_G0029244) Prkd2 (MGP_CAROLIEiJ_G0029243) Strn4 (MGP_CAROLIEiJ_G0029242) Fkrp (MGP_CAROLIEiJ_G0029241) Slc1a5 (MGP_CAROLIEiJ_G0029240) Ap2s1 (MGP_CAROLIEiJ_G0029239) Ceacam9 (MGP_CAROLIEiJ_G0029238) Ceacam15 (MGP_CAROLIEiJ_G0029237) Arhgap35 (MGP_CAROLIEiJ_G0029236) ##22 Npas1 (MGP_CAROLIEiJ_G0029235) Tmem160 (MGP_CAROLIEiJ_G0029234) MGP_CAROLIEiJ_G0029233 Sae1 (MGP_CAROLIEiJ_G0029232) Bbc3 (MGP_CAROLIEiJ_G0029231) Ccdc9 (MGP_CAROLIEiJ_G0029230) Inafm1 (MGP_CAROLIEiJ_G0029229) C5ar1 (MGP_CAROLIEiJ_G0029228) C5ar2 (MGP_CAROLIEiJ_G0029227) Dhx34 (MGP_CAROLIEiJ_G0029226) Meis3 (MGP_CAROLIEiJ_G0029225) Slc8a2 (MGP_CAROLIEiJ_G0029224) Kptn (MGP_CAROLIEiJ_G0029223) Napa (MGP_CAROLIEiJ_G0029222) Zfp541 (MGP_CAROLIEiJ_G0029221) Shrew mouse MODERN SPECIES 10 Ppp5c (MGP_PahariEiJ_G0021107) MGP_PahariEiJ_G0021106 MGP_PahariEiJ_G0021105 Pnma8b (MGP_PahariEiJ_G0021104) Calm3 (MGP_PahariEiJ_G0021103) Ptgir (MGP_PahariEiJ_G0021102) Gng8 (MGP_PahariEiJ_G0021101) Dact3 (MGP_PahariEiJ_G0021100) Prkd2 (MGP_PahariEiJ_G0021099) Strn4 (MGP_PahariEiJ_G0021098) MGP_PahariEiJ_G0021097 Slc1a5 (MGP_PahariEiJ_G0021096) Ap2s1 (MGP_PahariEiJ_G0021095) Ceacam9 (MGP_PahariEiJ_G0021094) Ceacam15 (MGP_PahariEiJ_G0021093) Arhgap35 (MGP_PahariEiJ_G0021092) ##22 Npas1 (MGP_PahariEiJ_G0021091) Tmem160 (MGP_PahariEiJ_G0021090) Zc3h4 (MGP_PahariEiJ_G0021089) Sae1 (MGP_PahariEiJ_G0021088) Bbc3 (MGP_PahariEiJ_G0021087) Ccdc9 (MGP_PahariEiJ_G0021086) Inafm1 (MGP_PahariEiJ_G0021085) C5ar1 (MGP_PahariEiJ_G0021084) C5ar2 (MGP_PahariEiJ_G0021083) Dhx34 (MGP_PahariEiJ_G0021082) Meis3 (MGP_PahariEiJ_G0021081) Slc8a2 (MGP_PahariEiJ_G0021080) Kptn (MGP_PahariEiJ_G0021079) Napa (MGP_PahariEiJ_G0021078) Zfp541 (MGP_PahariEiJ_G0021077) Rat MODERN SPECIES Pnma8b (ENSRNOG00000016863) Calm3 (ENSRNOG00000016770) Ptgir (ENSRNOG00000016756) Gng8 (ENSRNOG00000016701) Dact3 (ENSRNOG00000052256) Prkd2 (ENSRNOG00000016434) Strn4 (ENSRNOG00000016145) Fkrp (ENSRNOG00000016055) Slc1a5 (ENSRNOG00000015948) LOC679748 (ENSRNOG00000034106) Ap2s1 (ENSRNOG00000015865) Ceacam9 (ENSRNOG00000046915) LOC108349752 (ENSRNOG00000028617) LOC102550403 (ENSRNOG00000065825) Gng5 (ENSRNOG00000063636) Arhgap35 (ENSRNOG00000015852) ##22 Npas1 (ENSRNOG00000015376) Tmem160 (ENSRNOG00000015304) Zc3h4 (ENSRNOG00000015229) Sae1 (ENSRNOG00000015128) Bbc3 (ENSRNOG00000062473) Inafm1 (ENSRNOG00000048848) ENSRNOG00000066925 C5ar2 (ENSRNOG00000049028) AABR07002627.1 (ENSRNOG00000060587) Dhx34 (ENSRNOG00000047575) Meis3 (ENSRNOG00000021390) Slc8a2 (ENSRNOG00000001492) Napa (ENSRNOG00000001494) Zfp541 (ENSRNOG00000021800) Bicra (ENSRNOG00000011262) Upper Galilee mountains blind mole rat MODERN SPECIES 501 Ap2s1 (ENSNGAG00000005409) Slc1a5 (ENSNGAG00000011745) Fkrp (ENSNGAG00000008074) Strn4 (ENSNGAG00000015472) Prkd2 (ENSNGAG00000009795) ENSNGAG00000014192 Gng8 (ENSNGAG00000015091) Ptgir (ENSNGAG00000015456) ENSNGAG00000004089 Pnma8b (ENSNGAG00000008913) Pnma8a (ENSNGAG00000008259) Ppp5c (ENSNGAG00000012794) Hif3a (ENSNGAG00000014207) Arhgap35 (ENSNGAG00000016819) ##22 Npas1 (ENSNGAG00000018097) Tmem160 (ENSNGAG00000019488) Zc3h4 (ENSNGAG00000020090) ENSNGAG00000001209 Bbc3 (ENSNGAG00000004788) ENSNGAG00000007282 C5ar1 (ENSNGAG00000009652) C5ar2 (ENSNGAG00000010859) Dhx34 (ENSNGAG00000012974) Meis3 (ENSNGAG00000018810) Slc8a2 (ENSNGAG00000011676) ENSNGAG00000023937 Napa (ENSNGAG00000000817) Zfp541 (ENSNGAG00000022695) Bicra (ENSNGAG00000012259) Lesser Egyptian jerboa MODERN SPECIES 246 Hif3a (ENSJJAG00000017788) Ppp5c (ENSJJAG00000015850) Pnma8b (ENSJJAG00000015410) Calm3 (ENSJJAG00000017945) Ptgir (ENSJJAG00000017272) Gng8 (ENSJJAG00000016964) ENSJJAG00000015956 Prkd2 (ENSJJAG00000013478) Strn4 (ENSJJAG00000012202) Slc1a5 (ENSJJAG00000011796) ENSJJAG00000012064 Ap2s1 (ENSJJAG00000000379) Arhgap35 (ENSJJAG00000000272) ##22 Npas1 (ENSJJAG00000018354) Tmem160 (ENSJJAG00000018203) Zc3h4 (ENSJJAG00000019068) ENSJJAG00000017019 Bbc3 (ENSJJAG00000016781) Ccdc9 (ENSJJAG00000012491) Inafm1 (ENSJJAG00000011485) Kangaroo rat MODERN SPECIES 475 Nova2 (ENSDORG00000026568) Ccdc61 (ENSDORG00000010042) Pglyrp1 (ENSDORG00000027993) Hif3a (ENSDORG00000004664) Ppp5c (ENSDORG00000004665) ENSDORG00000023802 Pnma8b (ENSDORG00000028483) Calm3 (ENSDORG00000029756) Ptgir (ENSDORG00000005401) Gng8 (ENSDORG00000005403) ENSDORG00000005404 Prkd2 (ENSDORG00000005405) Strn4 (ENSDORG00000005407) Slc1a5 (ENSDORG00000008810) Ap2s1 (ENSDORG00000015282) Arhgap35 (ENSDORG00000001800) ##22 Npas1 (ENSDORG00000002722) Tmem160 (ENSDORG00000002725) Zc3h4 (ENSDORG00000002726) Sae1 (ENSDORG00000012199) ENSDORG00000029325 ENSDORG00000024050 C5ar1 (ENSDORG00000030050) Dhx34 (ENSDORG00000008437) Meis3 (ENSDORG00000008441) Slc8a2 (ENSDORG00000009991) ENSDORG00000009993 Napa (ENSDORG00000009995) Zfp541 (ENSDORG00000028161) Bicra (ENSDORG00000025123) Ehd2 (ENSDORG00000011700) Rodentia_A ANCESTRAL SPECIES 6 ENSGT00390000009557.C ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.a ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Hystricomorpha ANCESTRAL SPECIES 2 ENSGT00390000009557.C ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.a ENSGT00390000007074 ENSGT01030000234522.C.b.f.b.a ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 ENSGT00940000159112.b Hystricomorpha_a ANCESTRAL SPECIES 39 ENSGT00940000161006 ENSGT00390000009557.C ENSGT00940000161745 ENSGT00940000158785 ENSGT00390000007074 ENSGT01030000234522.C.b.f.b.a ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00940000167173 ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Hystricomorpha_b ANCESTRAL SPECIES 49 ENSGT00940000154133.B ENSGT00940000161006 ENSGT00940000161745 ENSGT00940000158785 ENSGT00390000007074 ENSGT01030000234522.C.b.f.b.a ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00940000167173 ENSGT01100000263564.a.g ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 ENSGT00940000159112.b ENSGT00940000159256 Long-tailed chinchilla MODERN SPECIES 281 ENSCLAG00000001044 PGLYRP1 (ENSCLAG00000001072) HIF3A (ENSCLAG00000001139) PPP5C (ENSCLAG00000001548) ENSCLAG00000002763 ENSCLAG00000003395 CALM3 (ENSCLAG00000003822) PTGIR (ENSCLAG00000004207) GNG8 (ENSCLAG00000004399) ENSCLAG00000001276 PRKD2 (ENSCLAG00000001395) STRN4 (ENSCLAG00000001542) FKRP (ENSCLAG00000001845) ENSCLAG00000002077 AP2S1 (ENSCLAG00000002250) ARHGAP35 (ENSCLAG00000002385) ##22 NPAS1 (ENSCLAG00000000717) TMEM160 (ENSCLAG00000000918) ZC3H4 (ENSCLAG00000001032) ENSCLAG00000000483 SAE1 (ENSCLAG00000000507) BBC3 (ENSCLAG00000000578) ENSCLAG00000000680 C5AR1 (ENSCLAG00000001064) DHX34 (ENSCLAG00000000906) MEIS3 (ENSCLAG00000000719) SLC8A2 (ENSCLAG00000000972) KPTN (ENSCLAG00000001346) NAPA (ENSCLAG00000001379) ZNF541 (ENSCLAG00000001489) BICRA (ENSCLAG00000000673) Degu MODERN SPECIES 238 PGLYRP1 (ENSODEG00000006980) HIF3A (ENSODEG00000007136) PPP5C (ENSODEG00000008796) GPATCH1 (ENSODEG00000007103) ENSODEG00000006634 PNMA8A (ENSODEG00000006429) CALM3 (ENSODEG00000008486) PTGIR (ENSODEG00000007904) GNG8 (ENSODEG00000007360) ENSODEG00000006767 PRKD2 (ENSODEG00000006559) STRN4 (ENSODEG00000009103) FKRP (ENSODEG00000019605) SLC1A5 (ENSODEG00000007341) AP2S1 (ENSODEG00000006649) ARHGAP35 (ENSODEG00000007178) ##22 NPAS1 (ENSODEG00000006878) TMEM160 (ENSODEG00000009538) ZC3H4 (ENSODEG00000008320) ENSODEG00000006581 BBC3 (ENSODEG00000006470) ENSODEG00000009476 ENSODEG00000008542 DHX34 (ENSODEG00000006333) MEIS3 (ENSODEG00000006485) SLC8A2 (ENSODEG00000007313) ENSODEG00000009127 NAPA (ENSODEG00000008511) ZNF541 (ENSODEG00000005850) BICRA (ENSODEG00000009243) EHD2 (ENSODEG00000006641) Guinea pig MODERN SPECIES 80 ENSCPOG00000024181 HIF3A (ENSCPOG00000024199) PPP5C (ENSCPOG00000023554) GPATCH1 (ENSCPOG00000024477) PNMA8A (ENSCPOG00000011877) ENSCPOG00000027577 CALM3 (ENSCPOG00000029998) PTGIR (ENSCPOG00000034773) GNG8 (ENSCPOG00000031647) DACT3 (ENSCPOG00000022203) PRKD2 (ENSCPOG00000003294) STRN4 (ENSCPOG00000001053) FKRP (ENSCPOG00000036590) SLC1A5 (ENSCPOG00000004326) AP2S1 (ENSCPOG00000026801) ARHGAP35 (ENSCPOG00000013236) ##22 NPAS1 (ENSCPOG00000023069) TMEM160 (ENSCPOG00000015280) ZC3H4 (ENSCPOG00000036659) SAE1 (ENSCPOG00000021581) ENSCPOG00000008209 INAFM1 (ENSCPOG00000034661) C5AR1 (ENSCPOG00000030913) C5AR2 (ENSCPOG00000010536) DHX34 (ENSCPOG00000006510) MEIS3 (ENSCPOG00000026589) SLC8A2 (ENSCPOG00000010035) KPTN (ENSCPOG00000010615) NAPA (ENSCPOG00000010617) ZNF541 (ENSCPOG00000020622) BICRA (ENSCPOG00000015610) Naked mole-rat female MODERN SPECIES 21 HIF3A (ENSHGLG00000015903) ENSHGLG00000015987 CCDC8 (ENSHGLG00000048973) ENSHGLG00000009334 PNMA8A (ENSHGLG00000013517) ENSHGLG00000009135 Calm3 (ENSHGLG00000007790) PTGIR (ENSHGLG00000007145) ENSHGLG00000034612 DACT3 (ENSHGLG00000047496) PRKD2 (ENSHGLG00000017425) STRN4 (ENSHGLG00000015771) FKRP (ENSHGLG00000017783) SLC1A5 (ENSHGLG00000013744) AP2S1 (ENSHGLG00000018471) ARHGAP35 (ENSHGLG00000010970) ##22 NPAS1 (ENSHGLG00000009357) TMEM160 (ENSHGLG00000009284) ZC3H4 (ENSHGLG00000008600) SAE1 (ENSHGLG00000007950) BBC3 (ENSHGLG00000050947) CCDC9 (ENSHGLG00000006240) C5AR1 (ENSHGLG00000005545) C5AR2 (ENSHGLG00000045362) DHX34 (ENSHGLG00000004917) MEIS3 (ENSHGLG00000018600) SLC8A2 (ENSHGLG00000017722) KPTN (ENSHGLG00000013757) NAPA (ENSHGLG00000017294) ZNF541 (ENSHGLG00000017589) EHD2 (ENSHGLG00000017825) Sciuridae ANCESTRAL SPECIES 5 ENSGT00390000009557.C ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.a ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a.j ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Marmotini ANCESTRAL SPECIES 7 ENSGT00390000009557.B.p.a.a ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.a ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a.j ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Marmotini_b ANCESTRAL SPECIES 22 ENSGT00390000009557.B.p.a.a ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.a ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a.j ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Arctic ground squirrel MODERN SPECIES 455 ENSUPAG00010009542 ENSUPAG00010009547 HIF3A (ENSUPAG00010009552) PPP5C (ENSUPAG00010009565) PNMA8A (ENSUPAG00010009574) PNMA8C (ENSUPAG00010009585) CCDC8 (ENSUPAG00010009586) CALM3 (ENSUPAG00010009609) PTGIR (ENSUPAG00010009623) GNG8 (ENSUPAG00010009624) DACT3 (ENSUPAG00010009628) PRKD2 (ENSUPAG00010009657) STRN4 (ENSUPAG00010009670) SLC1A5 (ENSUPAG00010009701) AP2S1 (ENSUPAG00010009722) ARHGAP35 (ENSUPAG00010009739) ##22 NPAS1 (ENSUPAG00010009764) TMEM160 (ENSUPAG00010009790) ZC3H4 (ENSUPAG00010009793) SAE1 (ENSUPAG00010009824) BBC3 (ENSUPAG00010009844) CCDC9 (ENSUPAG00010009846) INAFM1 (ENSUPAG00010009857) C5AR1 (ENSUPAG00010009863) C5AR2 (ENSUPAG00010009867) DHX34 (ENSUPAG00010009871) MEIS3 (ENSUPAG00010009940) SLC8A2 (ENSUPAG00010009969) KPTN (ENSUPAG00010010006) NAPA (ENSUPAG00010010015) ZNF541 (ENSUPAG00010010048) Squirrel MODERN SPECIES 264 HIF3A (ENSSTOG00000011980) PPP5C (ENSSTOG00000021131) PNMA8A (ENSSTOG00000028815) CCDC8 (ENSSTOG00000019897) CALM3 (ENSSTOG00000014352) PTGIR (ENSSTOG00000023648) GNG8 (ENSSTOG00000024152) ENSSTOG00000028905 PRKD2 (ENSSTOG00000026693) STRN4 (ENSSTOG00000025660) FKRP (ENSSTOG00000027896) SLC1A5 (ENSSTOG00000028576) ARHGAP35 (ENSSTOG00000011409) ##22 NPAS1 (ENSSTOG00000003396) TMEM160 (ENSSTOG00000024623) ZC3H4 (ENSSTOG00000016249) SAE1 (ENSSTOG00000016251) ENSSTOG00000005813 C5AR1 (ENSSTOG00000026678) C5AR2 (ENSSTOG00000023346) DHX34 (ENSSTOG00000015831) MEIS3 (ENSSTOG00000028182) SLC8A2 (ENSSTOG00000020165) KPTN (ENSSTOG00000006963) NAPA (ENSSTOG00000006983) ZNF541 (ENSSTOG00000026879) BICRA (ENSSTOG00000028398) ENSSTOG00000011087 Alpin marmot MODERN SPECIES 45 ENSMMMG00000013847 HIF3A (ENSMMMG00000013829) PPP5C (ENSMMMG00000013822) PNMA8A (ENSMMMG00000013817) PNMA8C (ENSMMMG00000013814) CCDC8 (ENSMMMG00000013809) CALM3 (ENSMMMG00000013799) PTGIR (ENSMMMG00000013798) GNG8 (ENSMMMG00000013789) ENSMMMG00000013782 PRKD2 (ENSMMMG00000013741) STRN4 (ENSMMMG00000013698) FKRP (ENSMMMG00000013696) SLC1A5 (ENSMMMG00000013678) AP2S1 (ENSMMMG00000013659) ARHGAP35 (ENSMMMG00000013646) ##22 NPAS1 (ENSMMMG00000013606) ENSMMMG00000013602 ZC3H4 (ENSMMMG00000013587) SAE1 (ENSMMMG00000013566) CCDC9 (ENSMMMG00000013499) C5AR1 (ENSMMMG00000013493) C5AR2 (ENSMMMG00000013488) DHX34 (ENSMMMG00000013402) MEIS3 (ENSMMMG00000013369) SLC8A2 (ENSMMMG00000013339) KPTN (ENSMMMG00000013277) NAPA (ENSMMMG00000013273) ZNF541 (ENSMMMG00000013251) BICRA (ENSMMMG00000013156) EHD2 (ENSMMMG00000013147) Eurasian red squirrel MODERN SPECIES 8 HIF3A (ENSSVLG00005024854) PPP5C (ENSSVLG00005024922) CCDC8 (ENSSVLG00005024952) PNMA8C (ENSSVLG00005024965) PNMA8A (ENSSVLG00005024983) CALM3 (ENSSVLG00005025029) PTGIR (ENSSVLG00005010260) GNG8 (ENSSVLG00005010305) DACT3 (ENSSVLG00005010336) PRKD2 (ENSSVLG00005010378) STRN4 (ENSSVLG00005010641) FKRP (ENSSVLG00005010926) SLC1A5 (ENSSVLG00005010966) ENSSVLG00005011219 AP2S1 (ENSSVLG00005011272) ARHGAP35 (ENSSVLG00005011555) ##22 NPAS1 (ENSSVLG00005011606) TMEM160 (ENSSVLG00005011672) ZC3H4 (ENSSVLG00005011727) SAE1 (ENSSVLG00005011951) BBC3 (ENSSVLG00005012098) CCDC9 (ENSSVLG00005012213) ENSSVLG00005012324 C5AR1 (ENSSVLG00005012437) C5AR2 (ENSSVLG00005012478) DHX34 (ENSSVLG00005012498) MEIS3 (ENSSVLG00005012542) SLC8A2 (ENSSVLG00005012674) KPTN (ENSSVLG00005012899) NAPA (ENSSVLG00005012991) ZNF541 (ENSSVLG00005013491) Lagomorpha ANCESTRAL SPECIES 135 ENSGT00940000158785 ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.f.b.a ENSGT00940000164310.e ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Pika MODERN SPECIES 2569 ARHGAP35 (ENSOPRG00000014834) ##22 ENSOPRG00000014860 ZC3H4 (ENSOPRG00000014889) SAE1 (ENSOPRG00000014929) ENSOPRG00000014952 Rabbit MODERN SPECIES 568 PPP5C (ENSOCUG00000021025) CCDC8 (ENSOCUG00000023898) PNMA8A (ENSOCUG00000003756) ENSOCUG00000037591 PTGIR (ENSOCUG00000026915) GNG8 (ENSOCUG00000003974) ENSOCUG00000030033 PRKD2 (ENSOCUG00000026784) STRN4 (ENSOCUG00000021418) FKRP (ENSOCUG00000000122) SLC1A5 (ENSOCUG00000009144) ENSOCUG00000039332 ARHGAP35 (ENSOCUG00000017126) ##22 NPAS1 (ENSOCUG00000016061) TMEM160 (ENSOCUG00000023097) ZC3H4 (ENSOCUG00000026069) SAE1 (ENSOCUG00000024320) BBC3 (ENSOCUG00000037839) CCDC9 (ENSOCUG00000013560) C5AR1 (ENSOCUG00000022167) C5AR2 (ENSOCUG00000025530) DHX34 (ENSOCUG00000014005) MEIS3 (ENSOCUG00000025760) ENSOCUG00000031820 KPTN (ENSOCUG00000024733) NAPA (ENSOCUG00000000967) ZNF541 (ENSOCUG00000000969) Laurasiatheria ANCESTRAL SPECIES 5 ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00710000107236 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00990000206928 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 Eulipotyphla ANCESTRAL SPECIES 94 ENSGT00390000017583 ENSGT00940000159485 ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 Common shrew MODERN SPECIES 5767 FKRP (ENSSARG00000014111) SLC1A5 (ENSSARG00000014113) ARHGAP35 (ENSSARG00000014120) ##22 NPAS1 (ENSSARG00000014127) TMEM160 (ENSSARG00000014133) ZC3H4 (ENSSARG00000014146) Laurasiatheria_a ANCESTRAL SPECIES 5 ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00990000206928 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a Artiodactyla ANCESTRAL SPECIES 5 ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Suina ANCESTRAL SPECIES 2 ENSGT00940000154133.B ENSGT00940000161006 ENSGT00940000161745 ENSGT00940000158785 ENSGT00940000170636 ENSGT01030000234522.C.b.f.a ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Chacoan peccary MODERN SPECIES 799 NANOS2 (ENSCWAG00000008461) NOVA2 (ENSCWAG00000008485) CCDC61 (ENSCWAG00000008530) PGLYRP1 (ENSCWAG00000008579) HIF3A (ENSCWAG00000008758) PPP5C (ENSCWAG00000010062) CALM3 (ENSCWAG00000010293) PTGIR (ENSCWAG00000010365) GNG8 (ENSCWAG00000010405) DACT3 (ENSCWAG00000010426) PRKD2 (ENSCWAG00000010476) STRN4 (ENSCWAG00000010545) FKRP (ENSCWAG00000010618) SLC1A5 (ENSCWAG00000010631) AP2S1 (ENSCWAG00000010683) ARHGAP35 (ENSCWAG00000010834) ##22 NPAS1 (ENSCWAG00000010905) TMEM160 (ENSCWAG00000011029) ZC3H4 (ENSCWAG00000011062) SAE1 (ENSCWAG00000011191) BBC3 (ENSCWAG00000011285) CCDC9 (ENSCWAG00000011355) INAFM1 (ENSCWAG00000011443) C5AR1 (ENSCWAG00000011461) C5AR2 (ENSCWAG00000011520) DHX34 (ENSCWAG00000011536) MEIS3 (ENSCWAG00000011591) ENSCWAG00000011922 SLC8A2 (ENSCWAG00000011951) KPTN (ENSCWAG00000012157) NAPA (ENSCWAG00000012199) Pig MODERN SPECIES 14 PGLYRP1 (ENSSSCG00000038688) ENSSSCG00000046511 HIF3A (ENSSSCG00000003101) PPP5C (ENSSSCG00000003098) ENSSSCG00000003102 CCDC8 (ENSSSCG00000033830) CALM3 (ENSSSCG00000022545) PTGIR (ENSSSCG00000026602) GNG8 (ENSSSCG00000022068) DACT3 (ENSSSCG00000022280) PRKD2 (ENSSSCG00000026152) STRN4 (ENSSSCG00000003104) FKRP (ENSSSCG00000003103) SLC1A5 (ENSSSCG00000003105) AP2S1 (ENSSSCG00000003106) ARHGAP35 (ENSSSCG00000003107) ##22 NPAS1 (ENSSSCG00000003108) TMEM160 (ENSSSCG00000003109) ZC3H4 (ENSSSCG00000003110) SAE1 (ENSSSCG00000003111) BBC3 (ENSSSCG00000003112) CCDC9 (ENSSSCG00000024240) C5AR1 (ENSSSCG00000056729) C5AR2 (ENSSSCG00000003113) DHX34 (ENSSSCG00000003114) MEIS3 (ENSSSCG00000003115) SLC8A2 (ENSSSCG00000029567) KPTN (ENSSSCG00000003121) NAPA (ENSSSCG00000003120) ZNF541 (ENSSSCG00000003119) BICRA (ENSSSCG00000022302) Artiodactyla_a ANCESTRAL SPECIES 4 ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Artiodactyla_b ANCESTRAL SPECIES 4 ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Cetacea ANCESTRAL SPECIES 6 ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 ENSGT00940000159112.b Odontoceti ANCESTRAL SPECIES 6 ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 ENSGT00940000159112.b Odontoceti_a ANCESTRAL SPECIES 7 ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.a.d ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 ENSGT00940000159112.b Dolphin MODERN SPECIES 1318 ARHGAP35 (ENSTTRG00000011403) ##22 NPAS1 (ENSTTRG00000011416) TMEM160 (ENSTTRG00000011428) Odontoceti_b ANCESTRAL SPECIES 5 ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.a.d ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 ENSGT00940000159112.b Monodontidae ANCESTRAL SPECIES 3 ENSGT00940000154133.B ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.a.d ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 ENSGT00940000159112.b Beluga whale MODERN SPECIES 14 CCDC61 (ENSDLEG00000004090) HIF3A (ENSDLEG00000004077) PPP5C (ENSDLEG00000004066) PNMA8A (ENSDLEG00000004062) PNMA8C (ENSDLEG00000004056) CCDC8 (ENSDLEG00000004049) CALM1 (ENSDLEG00000004044) PTGIR (ENSDLEG00000004041) GNG8 (ENSDLEG00000004040) DACT3 (ENSDLEG00000004034) PRKD2 (ENSDLEG00000004024) STRN4 (ENSDLEG00000004005) FKRP (ENSDLEG00000004003) SLC1A5 (ENSDLEG00000003998) AP2S1 (ENSDLEG00000003991) ARHGAP35 (ENSDLEG00000003986) ##22 ENSDLEG00000003982 ENSDLEG00000003975 TMEM160 (ENSDLEG00000003972) ZC3H4 (ENSDLEG00000003907) SAE1 (ENSDLEG00000003883) BBC3 (ENSDLEG00000003877) CCDC9 (ENSDLEG00000003861) C5AR1 (ENSDLEG00000003857) C5AR2 (ENSDLEG00000003852) DHX34 (ENSDLEG00000003821) MEIS3 (ENSDLEG00000003805) SLC8A2 (ENSDLEG00000003792) KPTN (ENSDLEG00000003782) NAPA (ENSDLEG00000003763) ZNF541 (ENSDLEG00000003750) Narwhal MODERN SPECIES 296 CCDC61 (ENSMMNG00015007871) HIF3A (ENSMMNG00015007921) PPP5C (ENSMMNG00015008098) ENSMMNG00015008192 PNMA8C (ENSMMNG00015008203) CCDC8 (ENSMMNG00015008209) CALM3 (ENSMMNG00015008255) PTGIR (ENSMMNG00015008294) GNG8 (ENSMMNG00015008308) DACT3 (ENSMMNG00015008322) PRKD2 (ENSMMNG00015008344) STRN4 (ENSMMNG00015008395) FKRP (ENSMMNG00015000038) SLC1A5 (ENSMMNG00015000079) AP2S1 (ENSMMNG00015000164) ARHGAP35 (ENSMMNG00015000238) ##22 NPAS1 (ENSMMNG00015000269) TMEM160 (ENSMMNG00015000299) ZC3H4 (ENSMMNG00015000348) SAE1 (ENSMMNG00015000464) BBC3 (ENSMMNG00015000522) CCDC9 (ENSMMNG00015000542) C5AR1 (ENSMMNG00015000571) C5AR2 (ENSMMNG00015000578) DHX34 (ENSMMNG00015000592) MEIS3 (ENSMMNG00015000637) SLC8A2 (ENSMMNG00015000698) KPTN (ENSMMNG00015000731) NAPA (ENSMMNG00015000780) ZNF541 (ENSMMNG00015000861) BICRA (ENSMMNG00015000944) Vaquita MODERN SPECIES 10 HIF3A (ENSPSNG00000006147) PPP5C (ENSPSNG00000006084) PNMA8A (ENSPSNG00000006045) PNMA8C (ENSPSNG00000006027) CCDC8 (ENSPSNG00000006015) ENSPSNG00000005987 CALM3 (ENSPSNG00000005927) PTGIR (ENSPSNG00000021685) GNG8 (ENSPSNG00000021667) DACT3 (ENSPSNG00000021641) PRKD2 (ENSPSNG00000021606) STRN4 (ENSPSNG00000021546) FKRP (ENSPSNG00000021515) SLC1A5 (ENSPSNG00000021297) AP2S1 (ENSPSNG00000021195) ARHGAP35 (ENSPSNG00000021142) ##22 NPAS1 (ENSPSNG00000021101) TMEM160 (ENSPSNG00000021070) ZC3H4 (ENSPSNG00000020937) SAE1 (ENSPSNG00000020821) BBC3 (ENSPSNG00000020767) CCDC9 (ENSPSNG00000020676) C5AR1 (ENSPSNG00000020623) C5AR2 (ENSPSNG00000020611) DHX34 (ENSPSNG00000020581) MEIS3 (ENSPSNG00000020466) SLC8A2 (ENSPSNG00000020290) KPTN (ENSPSNG00000020252) NAPA (ENSPSNG00000020206) ZNF541 (ENSPSNG00000020105) BICRA (ENSPSNG00000019926) Sperm whale MODERN SPECIES 8 LSM14A (ENSPCTG00005013769) ENSPCTG00005013668 KIAA0355 (ENSPCTG00005013477) GPI (ENSPCTG00005013183) PDCD2L (ENSPCTG00005013093) UBA2 (ENSPCTG00005012969) WTIP (ENSPCTG00005012867) ENSPCTG00005012698 ZNF599 (ENSPCTG00005012568) ZNF792 (ENSPCTG00005012349) NOVA2 (ENSPCTG00005012295) HIF3A (ENSPCTG00005011738) CCDC8 (ENSPCTG00005011665) ENSPCTG00005011609 STRN4 (ENSPCTG00005011583) ARHGAP35 (ENSPCTG00005011530) ##22 ENSPCTG00005011494 ENSPCTG00005011470 ENSPCTG00005011422 ENSPCTG00005011401 ENSPCTG00005011381 ZNF541 (ENSPCTG00005010975) NOP53 (ENSPCTG00005010906) EHD2 (ENSPCTG00005010881) SLC8A2 (ENSPCTG00005010761) MEIS3 (ENSPCTG00005010662) DHX34 (ENSPCTG00005010600) C5AR1 (ENSPCTG00005010550) C5AR2 (ENSPCTG00005010531) CRX (ENSPCTG00005010490) BSPH1 (ENSPCTG00005010425) Blue whale MODERN SPECIES 10 PGLYRP1 (ENSBMSG00010021143) IGFL1 (ENSBMSG00010021137) HIF3A (ENSBMSG00010021058) PPP5C (ENSBMSG00010021017) PNMA8A (ENSBMSG00010020996) CCDC8 (ENSBMSG00010020979) CALM3 (ENSBMSG00010020940) PTGIR (ENSBMSG00010020919) GNG8 (ENSBMSG00010020908) DACT3 (ENSBMSG00010020888) PRKD2 (ENSBMSG00010020856) STRN4 (ENSBMSG00010020831) FKRP (ENSBMSG00010020816) SLC1A5 (ENSBMSG00010020761) AP2S1 (ENSBMSG00010020580) ARHGAP35 (ENSBMSG00010020533) ##22 NPAS1 (ENSBMSG00010020493) TMEM160 (ENSBMSG00010020478) ZC3H4 (ENSBMSG00010020432) SAE1 (ENSBMSG00010020376) BBC3 (ENSBMSG00010020342) CCDC9 (ENSBMSG00010020094) C5AR1 (ENSBMSG00010020065) C5AR2 (ENSBMSG00010020050) DHX34 (ENSBMSG00010020024) MEIS3 (ENSBMSG00010019996) SLC8A2 (ENSBMSG00010019907) NAPA (ENSBMSG00010019832) ZNF541 (ENSBMSG00010019774) BICRA (ENSBMSG00010019701) EHD2 (ENSBMSG00010019668) Pecora ANCESTRAL SPECIES 4 ENSGT00940000161006 ENSGT00390000009557.C ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.a ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Yarkand deer MODERN SPECIES 27 HIF3A (ENSCHYG00000013457) PPP5C (ENSCHYG00000013920) PNMA8A (ENSCHYG00000014197) ENSCHYG00000014216 CCDC8 (ENSCHYG00000014352) CALM3 (ENSCHYG00000014426) PTGIR (ENSCHYG00000014757) GNG8 (ENSCHYG00000014847) ENSCHYG00000014899 ENSCHYG00000014954 PRKD2 (ENSCHYG00000015014) STRN4 (ENSCHYG00000015201) FKRP (ENSCHYG00000015463) SLC1A5 (ENSCHYG00000015481) AP2S1 (ENSCHYG00000015644) ARHGAP35 (ENSCHYG00000015852) ##22 NPAS1 (ENSCHYG00000015977) TMEM160 (ENSCHYG00000016093) ZC3H4 (ENSCHYG00000016192) SAE1 (ENSCHYG00000016642) ENSCHYG00000017008 CCDC9 (ENSCHYG00000017076) ENSCHYG00000017388 INAFM1 (ENSCHYG00000017434) C5AR1 (ENSCHYG00000017464) ENSCHYG00000017494 C5AR2 (ENSCHYG00000017549) DHX34 (ENSCHYG00000017576) MEIS3 (ENSCHYG00000017783) SLC8A2 (ENSCHYG00000018134) KPTN (ENSCHYG00000018196) Percora_a ANCESTRAL SPECIES 4 ENSGT00940000161006 ENSGT00390000009557.C ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.a ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Bovidae ANCESTRAL SPECIES 4 ENSGT00940000161006 ENSGT00390000009557.C ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.a ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Bovinae ANCESTRAL SPECIES 3 ENSGT00940000157251.kb.b ENSGT00390000009557.C ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.a ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Bos ANCESTRAL SPECIES 4 ENSGT00940000157251.kb.b ENSGT00390000009557.C ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.a ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Bos_b ANCESTRAL SPECIES ENSGT00940000157251.kb.b ENSGT00390000009557.C ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.a ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Hybrid Bos Indicus MODERN SPECIES 9 ENSBIXG00005023638 IGFL1 (ENSBIXG00005023661) HIF3A (ENSBIXG00005023842) PPP5C (ENSBIXG00005023931) PNMA8A (ENSBIXG00005023944) CCDC8 (ENSBIXG00005024071) CALM3 (ENSBIXG00005024193) PTGIR (ENSBIXG00005024224) GNG8 (ENSBIXG00005004139) DACT3 (ENSBIXG00005024273) PRKD2 (ENSBIXG00005024335) STRN4 (ENSBIXG00005024484) FKRP (ENSBIXG00005024505) SLC1A5 (ENSBIXG00005024582) AP2S1 (ENSBIXG00005024725) ARHGAP35 (ENSBIXG00005004231) ##22 NPAS1 (ENSBIXG00005024813) ENSBIXG00005024833 ZC3H4 (ENSBIXG00005024863) SAE1 (ENSBIXG00005024933) BBC3 (ENSBIXG00005024989) CCDC9 (ENSBIXG00005025090) C5AR1 (ENSBIXG00005025115) C5AR2 (ENSBIXG00005025135) DHX34 (ENSBIXG00005004281) MEIS3 (ENSBIXG00005025204) SLC8A2 (ENSBIXG00005025226) KPTN (ENSBIXG00005006855) NAPA (ENSBIXG00005025291) ZNF541 (ENSBIXG00005025312) BICRA (ENSBIXG00005025350) Cow MODERN SPECIES 9 IGFL1 (ENSBTAG00000000027) HIF3A (ENSBTAG00000018948) PPP5C (ENSBTAG00000008014) PNMA8A (ENSBTAG00000009337) CCDC8 (ENSBTAG00000018181) CALM3 (ENSBTAG00000014583) PTGIR (ENSBTAG00000014585) GNG8 (ENSBTAG00000017762) DACT3 (ENSBTAG00000030705) ENSBTAG00000052862 PRKD2 (ENSBTAG00000015599) STRN4 (ENSBTAG00000005830) FKRP (ENSBTAG00000050243) SLC1A5 (ENSBTAG00000013577) AP2S1 (ENSBTAG00000010584) ARHGAP35 (ENSBTAG00000015543) ##22 NPAS1 (ENSBTAG00000015576) TMEM160 (ENSBTAG00000015579) ZC3H4 (ENSBTAG00000009286) SAE1 (ENSBTAG00000002676) BBC3 (ENSBTAG00000050313) CCDC9 (ENSBTAG00000014117) INAFM1 (ENSBTAG00000053132) C5AR1 (ENSBTAG00000020872) C5AR2 (ENSBTAG00000037735) DHX34 (ENSBTAG00000006848) MEIS3 (ENSBTAG00000006862) SLC8A2 (ENSBTAG00000010856) KPTN (ENSBTAG00000030769) NAPA (ENSBTAG00000013084) ZNF541 (ENSBTAG00000012606) Bos_a ANCESTRAL SPECIES 16 ENSGT00940000161006 ENSGT00390000009557.C ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.a ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Wild yak MODERN SPECIES 1227 CCDC8 (ENSBMUG00000005377) ENSBMUG00000005372 CALM3 (ENSBMUG00000005340) PTGIR (ENSBMUG00000005300) GNG8 (ENSBMUG00000005292) ENSBMUG00000005284 PRKD2 (ENSBMUG00000005252) STRN4 (ENSBMUG00000005225) SLC1A5 (ENSBMUG00000005207) AP2S1 (ENSBMUG00000005174) ARHGAP35 (ENSBMUG00000005114) ##22 ENSBMUG00000005105 TMEM160 (ENSBMUG00000005100) ZC3H4 (ENSBMUG00000005069) SAE1 (ENSBMUG00000004945) BBC3 (ENSBMUG00000004887) CCDC9 (ENSBMUG00000004872) INAFM1 (ENSBMUG00000004859) C5AR1 (ENSBMUG00000004853) C5AR2 (ENSBMUG00000004695) DHX34 (ENSBMUG00000004684) MEIS3 (ENSBMUG00000004394) SLC8A2 (ENSBMUG00000004136) KPTN (ENSBMUG00000004112) NAPA (ENSBMUG00000004066) ZNF541 (ENSBMUG00000004011) Domestic yak MODERN SPECIES 12 PGLYRP1 (ENSBGRG00000019198) IGFL1 (ENSBGRG00000019136) HIF3A (ENSBGRG00000018647) PPP5C (ENSBGRG00000018431) PNMA8A (ENSBGRG00000018367) CCDC8 (ENSBGRG00000018249) CALM3 (ENSBGRG00000018002) PTGIR (ENSBGRG00000017949) GNG8 (ENSBGRG00000017906) DACT3 (ENSBGRG00000017786) PRKD2 (ENSBGRG00000017664) STRN4 (ENSBGRG00000017163) FKRP (ENSBGRG00000017133) SLC1A5 (ENSBGRG00000016867) ENSBGRG00000016517 ARHGAP35 (ENSBGRG00000016330) ##22 NPAS1 (ENSBGRG00000016050) TMEM160 (ENSBGRG00000015984) ZC3H4 (ENSBGRG00000015678) SAE1 (ENSBGRG00000015234) BBC3 (ENSBGRG00000015056) CCDC9 (ENSBGRG00000014812) INAFM1 (ENSBGRG00000014787) C5AR1 (ENSBGRG00000014737) C5AR2 (ENSBGRG00000014720) ENSBGRG00000014586 MEIS3 (ENSBGRG00000025550) SLC8A2 (ENSBGRG00000025527) KPTN (ENSBGRG00000025467) NAPA (ENSBGRG00000025359) ZNF541 (ENSBGRG00000025322) American bison MODERN SPECIES 3227 PGLYRP1 (ENSBBBG00000006949) ENSBBBG00000009057 IGFL1 (ENSBBBG00000014765) HIF3A (ENSBBBG00000014756) PPP5C (ENSBBBG00000014726) PNMA8A (ENSBBBG00000014698) CCDC8 (ENSBBBG00000007256) CALM3 (ENSBBBG00000014637) PTGIR (ENSBBBG00000014585) GNG8 (ENSBBBG00000007169) ENSBBBG00000014572 PRKD2 (ENSBBBG00000007407) STRN4 (ENSBBBG00000007553) SLC1A5 (ENSBBBG00000003362) AP2S1 (ENSBBBG00000002880) ARHGAP35 (ENSBBBG00000014432) ##22 ENSBBBG00000014422 ENSBBBG00000003321 SAE1 (ENSBBBG00000014398) BBC3 (ENSBBBG00000014369) CCDC9 (ENSBBBG00000014362) C5AR1 (ENSBBBG00000003265) DHX34 (ENSBBBG00000014324) MEIS3 (ENSBBBG00000009054) SLC8A2 (ENSBBBG00000014252) KPTN (ENSBBBG00000014243) NAPA (ENSBBBG00000014223) ZNF541 (ENSBBBG00000014201) BICRA (ENSBBBG00000003213) EHD2 (ENSBBBG00000006945) NOP53 (ENSBBBG00000014154) Caprinae ANCESTRAL SPECIES 4 ENSGT00940000154133.B ENSGT00940000161006 ENSGT00390000009557.C ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.a ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Rambouillet Sheep MODERN SPECIES 5 CCDC61 (ENSOARG00020012803) PGLYRP1 (ENSOARG00020012949) IGFL1 (ENSOARG00020012997) HIF3A (ENSOARG00020013117) PPP5C (ENSOARG00020014431) CCDC8 (ENSOARG00020014656) CALM2 (ENSOARG00020014681) PTGIR (ENSOARG00020014841) GNG8 (ENSOARG00020014962) DACT3 (ENSOARG00020015009) PRKD2 (ENSOARG00020015155) STRN4 (ENSOARG00020009995) FKRP (ENSOARG00020010516) SLC1A5 (ENSOARG00020010548) AP2S1 (ENSOARG00020010737) ARHGAP35 (ENSOARG00020011291) ##22 NPAS1 (ENSOARG00020011377) TMEM160 (ENSOARG00020011550) ZC3H4 (ENSOARG00020011583) SAE1 (ENSOARG00020011750) BBC3 (ENSOARG00020011954) CCDC9 (ENSOARG00020012051) INAFM1 (ENSOARG00020012115) C5AR1 (ENSOARG00020012129) C5AR2 (ENSOARG00020012174) DHX34 (ENSOARG00020012207) MEIS3 (ENSOARG00020012359) SLC8A2 (ENSOARG00020012581) KPTN (ENSOARG00020012769) NAPA (ENSOARG00020012824) ZNF541 (ENSOARG00020012969) Goat MODERN SPECIES 9 PGLYRP1 (ENSCHIG00000013020) IGFL1 (ENSCHIG00000023173) HIF3A (ENSCHIG00000018939) PPP5C (ENSCHIG00000024557) ENSCHIG00000026916 CCDC8 (ENSCHIG00000010061) CALM3 (ENSCHIG00000011296) PTGIR (ENSCHIG00000016612) GNG8 (ENSCHIG00000018099) DACT3 (ENSCHIG00000021818) PRKD2 (ENSCHIG00000021220) STRN4 (ENSCHIG00000019269) FKRP (ENSCHIG00000005654) SLC1A5 (ENSCHIG00000020955) AP2S1 (ENSCHIG00000022984) ARHGAP35 (ENSCHIG00000024478) ##22 NPAS1 (ENSCHIG00000006784) TMEM160 (ENSCHIG00000020208) ZC3H4 (ENSCHIG00000013956) SAE1 (ENSCHIG00000026570) BBC3 (ENSCHIG00000010347) ENSCHIG00000023357 CCDC9 (ENSCHIG00000008730) INAFM1 (ENSCHIG00000003153) C5AR1 (ENSCHIG00000016291) C5AR2 (ENSCHIG00000003475) DHX34 (ENSCHIG00000024526) MEIS3 (ENSCHIG00000013472) SLC8A2 (ENSCHIG00000005606) KPTN (ENSCHIG00000019625) NAPA (ENSCHIG00000023468) Siberian musk deer MODERN SPECIES 124 IGFL1 (ENSMMSG00000002324) ENSMMSG00000002309 HIF3A (ENSMMSG00000002239) PPP5C (ENSMMSG00000002194) ENSMMSG00000002170 ENSMMSG00000002162 CALM3 (ENSMMSG00000002115) PTGIR (ENSMMSG00000002087) GNG8 (ENSMMSG00000002075) DACT3 (ENSMMSG00000002045) PRKD2 (ENSMMSG00000002012) STRN4 (ENSMMSG00000001918) FKRP (ENSMMSG00000001899) SLC1A5 (ENSMMSG00000001866) AP2S1 (ENSMMSG00000001766) ARHGAP35 (ENSMMSG00000001730) ##22 NPAS1 (ENSMMSG00000001706) TMEM160 (ENSMMSG00000001690) ZC3H4 (ENSMMSG00000001677) ENSMMSG00000001602 BBC3 (ENSMMSG00000001565) CCDC9 (ENSMMSG00000001515) C5AR1 (ENSMMSG00000001497) C5AR2 (ENSMMSG00000001489) DHX34 (ENSMMSG00000001413) MEIS3 (ENSMMSG00000001373) SLC8A2 (ENSMMSG00000001344) KPTN (ENSMMSG00000001314) NAPA (ENSMMSG00000001259) ZNF541 (ENSMMSG00000001131) BICRA (ENSMMSG00000001054) Camelidae ANCESTRAL SPECIES 15 ENSGT00940000161006 ENSGT00390000009557.C ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.a ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00710000107236 ENSGT00530000063950.a.b ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 ENSGT00940000159112.b Alpaca MODERN SPECIES 1382 ARHGAP35 (ENSVPAG00000007886) ##22 Arabian camel MODERN SPECIES 35 PGLYRP1 (ENSCDRG00005011474) IGFL1 (ENSCDRG00005011529) HIF3A (ENSCDRG00005011604) PPP5C (ENSCDRG00005011852) PNMA8A (ENSCDRG00005012183) PNMA8C (ENSCDRG00005012241) CCDC8 (ENSCDRG00005012268) CALM3 (ENSCDRG00005012287) PTGIR (ENSCDRG00005012366) ENSCDRG00005012438 ENSCDRG00005000209 PRKD2 (ENSCDRG00005000229) STRN4 (ENSCDRG00005000314) SLC1A5 (ENSCDRG00005000433) AP2S1 (ENSCDRG00005000547) ARHGAP35 (ENSCDRG00005000613) ##22 ENSCDRG00005000682 NPAS1 (ENSCDRG00005000700) TMEM160 (ENSCDRG00005000726) ZC3H4 (ENSCDRG00005000747) SAE1 (ENSCDRG00005000803) ENSCDRG00005000861 CCDC9 (ENSCDRG00005000886) C5AR1 (ENSCDRG00005000922) C5AR2 (ENSCDRG00005000932) DHX34 (ENSCDRG00005000955) MEIS3 (ENSCDRG00005001000) SLC8A2 (ENSCDRG00005001049) KPTN (ENSCDRG00005001072) NAPA (ENSCDRG00005001100) ZNF541 (ENSCDRG00005001169) Laurasiatheria_b ANCESTRAL SPECIES 5 ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00990000206928 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a Carnivora ANCESTRAL SPECIES 2 ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00990000206928 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a Caniformia ANCESTRAL SPECIES 1 ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00990000206928 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a Caniformia_b ANCESTRAL SPECIES 2 ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00990000206928 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Ursidae ANCESTRAL SPECIES 30 ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.a ENSGT00940000164310.e ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007.d ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00990000206928 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a.x ENSGT00940000160330 Ursus ANCESTRAL SPECIES 13 ENSGT00390000009557.B.a.b ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.a ENSGT00940000164310.e ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a.h.a ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007.d ENSGT00530000063950.a.b ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00990000206928 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a.x ENSGT00940000159112.b ENSGT00940000159256 American black bear MODERN SPECIES 1869 ARHGAP35 (ENSUAMG00000025827) ##22 NPAS1 (ENSUAMG00000025828) TMEM160 (ENSUAMG00000025829) Polar bear MODERN SPECIES 115 ENSUMAG00000023704 ENSUMAG00000023706 ENSUMAG00000023707 HIF3A (ENSUMAG00000023708) PPP5C (ENSUMAG00000023710) PNMA8A (ENSUMAG00000023711) PNMA8C (ENSUMAG00000023712) CCDC8 (ENSUMAG00000023713) ENSUMAG00000023715 ENSUMAG00000023716 GNG8 (ENSUMAG00000023717) PRKD2 (ENSUMAG00000023719) STRN4 (ENSUMAG00000023724) ENSUMAG00000023748 ENSUMAG00000023753 ARHGAP35 (ENSUMAG00000023756) ##22 ENSUMAG00000023763 ENSUMAG00000023768 SAE1 (ENSUMAG00000023769) CCDC9 (ENSUMAG00000023773) C5AR1 (ENSUMAG00000023780) MEIS3 (ENSUMAG00000023795) ENSUMAG00000023803 KPTN (ENSUMAG00000023806) NAPA (ENSUMAG00000023811) ENSUMAG00000023829 ENSUMAG00000023830 ENSUMAG00000023832 SELENOW (ENSUMAG00000023836) CRX (ENSUMAG00000023837) ENSUMAG00000023838 Giant Panda MODERN SPECIES 3 PGLYRP1 (ENSAMEG00000000626) ENSAMEG00000008655 HIF3A (ENSAMEG00000008615) ENSAMEG00000008577 ENSAMEG00000029960 ENSAMEG00000024067 ENSAMEG00000024569 ENSAMEG00000029734 ENSAMEG00000008560 GNG8 (ENSAMEG00000008557) ENSAMEG00000026303 PRKD2 (ENSAMEG00000008498) STRN4 (ENSAMEG00000008435) SLC1A5 (ENSAMEG00000008407) ENSAMEG00000008394 ARHGAP35 (ENSAMEG00000008374) ##22 TMEM160 (ENSAMEG00000028478) ZC3H4 (ENSAMEG00000008349) SAE1 (ENSAMEG00000008313) BBC3 (ENSAMEG00000008310) CCDC9 (ENSAMEG00000008286) C5AR2 (ENSAMEG00000019477) DHX34 (ENSAMEG00000008270) MEIS3 (ENSAMEG00000008199) SLC8A2 (ENSAMEG00000008172) KPTN (ENSAMEG00000008142) NAPA (ENSAMEG00000008104) ZNF541 (ENSAMEG00000029569) BICRA (ENSAMEG00000008090) EHD2 (ENSAMEG00000015263) NOP53 (ENSAMEG00000015214) Mustelinae ANCESTRAL SPECIES 7 ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 ENSGT00940000159112.b American mink MODERN SPECIES 135 HIF3A (ENSNVIG00000009557) PPP5C (ENSNVIG00000009605) PNMA8A (ENSNVIG00000009641) C9JTH8 (ENSNVIG00000009647) CCDC8 (ENSNVIG00000009649) ENSNVIG00000009652 CALM3 (ENSNVIG00000009664) PTGIR (ENSNVIG00000009732) ENSNVIG00000009739 ENSNVIG00000009748 PRKD2 (ENSNVIG00000009771) STRN4 (ENSNVIG00000010539) FKRP (ENSNVIG00000010581) SLC1A5 (ENSNVIG00000010588) AP2S1 (ENSNVIG00000010605) ARHGAP35 (ENSNVIG00000010727) ##22 NPAS1 (ENSNVIG00000010755) TMEM160 (ENSNVIG00000010793) ZC3H4 (ENSNVIG00000010804) SAE1 (ENSNVIG00000010826) ENSNVIG00000010884 CCDC9 (ENSNVIG00000010901) C5AR1 (ENSNVIG00000010940) C5AR2 (ENSNVIG00000010949) DHX34 (ENSNVIG00000010958) MEIS3 (ENSNVIG00000010981) SLC8A2 (ENSNVIG00000011004) KPTN (ENSNVIG00000011012) NAPA (ENSNVIG00000011031) ZNF541 (ENSNVIG00000011069) BICRA (ENSNVIG00000011095) Ferret MODERN SPECIES 291 PGLYRP1 (ENSMPUG00000005395) ENSMPUG00000005385 HIF3A (ENSMPUG00000005285) PPP5C (ENSMPUG00000005275) PNMA8A (ENSMPUG00000005271) CCDC8 (ENSMPUG00000019370) CALM3 (ENSMPUG00000005261) PTGIR (ENSMPUG00000005257) GNG8 (ENSMPUG00000005250) ENSMPUG00000005246 PRKD2 (ENSMPUG00000005234) STRN4 (ENSMPUG00000005157) FKRP (ENSMPUG00000019369) SLC1A5 (ENSMPUG00000005149) AP2S1 (ENSMPUG00000005143) ARHGAP35 (ENSMPUG00000005138) ##22 NPAS1 (ENSMPUG00000005118) TMEM160 (ENSMPUG00000005131) ZC3H4 (ENSMPUG00000005065) SAE1 (ENSMPUG00000004965) BBC3 (ENSMPUG00000004953) CCDC9 (ENSMPUG00000004941) C5AR1 (ENSMPUG00000019368) C5AR2 (ENSMPUG00000019367) DHX34 (ENSMPUG00000004925) ENSMPUG00000004760 SLC8A2 (ENSMPUG00000004745) KPTN (ENSMPUG00000004660) NAPA (ENSMPUG00000004511) ZNF541 (ENSMPUG00000004486) BICRA (ENSMPUG00000004473) Canidae ANCESTRAL SPECIES 5 ENSGT00390000009557.B.a.a ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.a ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Canis_lupus ANCESTRAL SPECIES ENSGT00390000009557.B.b ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.a ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Dog MODERN SPECIES ENSCAFG00845004529 HIF3A (ENSCAFG00845004467) ENSCAFG00845004375 ENSCAFG00845004299 ENSCAFG00845004294 ENSCAFG00845004289 ENSCAFG00845004281 GNG8 (ENSCAFG00845003458) DACT3 (ENSCAFG00845003449) ENSCAFG00845003424 PRKD2 (ENSCAFG00845003382) STRN4 (ENSCAFG00845003353) FKRP (ENSCAFG00845003332) SLC1A5 (ENSCAFG00845003284) AP2S1 (ENSCAFG00845003157) ARHGAP35 (ENSCAFG00845003086) ##22 ARHGAP35 (ENSCAFG00845003034) TMEM160 (ENSCAFG00845003007) ZC3H4 (ENSCAFG00845002992) SAE1 (ENSCAFG00845002951) BBC3 (ENSCAFG00845002815) CCDC9 (ENSCAFG00845002800) INAFM1 (ENSCAFG00845002784) C5AR1 (ENSCAFG00845002761) C5AR2 (ENSCAFG00845002732) DHX34 (ENSCAFG00845002720) MEIS3 (ENSCAFG00845002685) SLC8A2 (ENSCAFG00845002555) KPTN (ENSCAFG00845002500) NAPA (ENSCAFG00845002467) ZNF541 (ENSCAFG00845002412) Dingo MODERN SPECIES 125 ENSCAFG00020001697 HIF3A (ENSCAFG00020001684) PPP5C (ENSCAFG00020001676) PNMA8A (ENSCAFG00020001670) PNMA8C (ENSCAFG00020001664) CCDC8 (ENSCAFG00020001658) ENSCAFG00020001643 PTGIR (ENSCAFG00020001637) GNG8 (ENSCAFG00020001623) DACT3 (ENSCAFG00020001607) PRKD2 (ENSCAFG00020001585) STRN4 (ENSCAFG00020001572) FKRP (ENSCAFG00020001564) SLC1A5 (ENSCAFG00020001559) ENSCAFG00020001550 ARHGAP35 (ENSCAFG00020001540) ##22 ENSCAFG00020001534 ENSCAFG00020001527 ZC3H4 (ENSCAFG00020001450) SAE1 (ENSCAFG00020001254) ENSCAFG00020001204 CCDC9 (ENSCAFG00020001196) INAFM1 (ENSCAFG00020001184) C5AR1 (ENSCAFG00020001178) C5AR2 (ENSCAFG00020001172) DHX34 (ENSCAFG00020001163) MEIS3 (ENSCAFG00020001147) SLC8A2 (ENSCAFG00020001118) KPTN (ENSCAFG00020000973) NAPA (ENSCAFG00020000831) ZNF541 (ENSCAFG00020000764) Red fox MODERN SPECIES 101 ENSVVUG00000002866 HIF3A (ENSVVUG00000002779) PPP5C (ENSVVUG00000002773) PNMA8A (ENSVVUG00000002767) PNMA8C (ENSVVUG00000002766) CCDC8 (ENSVVUG00000002765) CALM1 (ENSVVUG00000002762) PTGIR (ENSVVUG00000002758) GNG8 (ENSVVUG00000002757) ENSVVUG00000002753 PRKD2 (ENSVVUG00000002735) STRN4 (ENSVVUG00000000583) SLC1A5 (ENSVVUG00000000475) FKRP (ENSVVUG00000000452) AP2S1 (ENSVVUG00000000416) ARHGAP35 (ENSVVUG00000000350) ##22 NPAS1 (ENSVVUG00000000317) TMEM160 (ENSVVUG00000000280) ZC3H4 (ENSVVUG00000000208) SAE1 (ENSVVUG00000000163) ENSVVUG00000000139 ENSVVUG00000023521 CCDC9 (ENSVVUG00000023520) C5AR1 (ENSVVUG00000023518) C5AR2 (ENSVVUG00000023517) DHX34 (ENSVVUG00000023515) MEIS3 (ENSVVUG00000023497) SLC8A2 (ENSVVUG00000023490) KPTN (ENSVVUG00000023485) NAPA (ENSVVUG00000023413) ZNF541 (ENSVVUG00000023392) Felidae ANCESTRAL SPECIES 7 ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Panthera ANCESTRAL SPECIES 20 ENSGT00390000009557.B.a.b ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.a ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Tiger MODERN SPECIES 36 ENSPTIG00000014036 PNMA8C (ENSPTIG00000007343) ENSPTIG00000015079 ENSPTIG00000017515 GNG8 (ENSPTIG00000017646) ENSPTIG00000017935 PRKD2 (ENSPTIG00000018488) STRN4 (ENSPTIG00000005381) SLC1A5 (ENSPTIG00000011531) ENSPTIG00000012880 ARHGAP35 (ENSPTIG00000013260) ##22 ENSPTIG00000013620 ZC3H4 (ENSPTIG00000014229) SAE1 (ENSPTIG00000016036) ENSPTIG00000016579 C5AR1 (ENSPTIG00000000446) DHX34 (ENSPTIG00000018435) MEIS3 (ENSPTIG00000019415) ENSPTIG00000011113 ENSPTIG00000012410 NAPA (ENSPTIG00000012945) ZNF541 (ENSPTIG00000014919) EHD2 (ENSPTIG00000018608) ENSPTIG00000018779 ENSPTIG00000021571 ENSPTIG00000021675 Panthera_a ANCESTRAL SPECIES 22 ENSGT00390000009557.B.a.b ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.a ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 lion MODERN SPECIES 15 ENSPLOG00000021927 ENSPLOG00000005466 HIF3A (ENSPLOG00000005534) PPP5C (ENSPLOG00000005583) PNMA8A (ENSPLOG00000005626) PNMA8C (ENSPLOG00000005649) CALM3 (ENSPLOG00000005689) PTGIR (ENSPLOG00000005755) GNG8 (ENSPLOG00000005773) DACT3 (ENSPLOG00000005799) PRKD2 (ENSPLOG00000005850) STRN4 (ENSPLOG00000006025) FKRP (ENSPLOG00000006088) ENSPLOG00000006107 AP2S1 (ENSPLOG00000006172) ARHGAP35 (ENSPLOG00000006320) ##22 NPAS1 (ENSPLOG00000006360) ENSPLOG00000006416 ZC3H4 (ENSPLOG00000006441) SAE1 (ENSPLOG00000006483) BBC3 (ENSPLOG00000006527) CCDC9 (ENSPLOG00000006569) INAFM1 (ENSPLOG00000006630) C5AR1 (ENSPLOG00000006646) C5AR2 (ENSPLOG00000006656) DHX34 (ENSPLOG00000006682) MEIS3 (ENSPLOG00000006810) SLC8A2 (ENSPLOG00000006887) KPTN (ENSPLOG00000006920) NAPA (ENSPLOG00000006967) ZNF541 (ENSPLOG00000007040) leopard MODERN SPECIES 103 HIF3A (ENSPPRG00000008307) PPP5C (ENSPPRG00000009086) ENSPPRG00000010075 PNMA8C (ENSPPRG00000015301) CCDC8 (ENSPPRG00000015314) CALM3 (ENSPPRG00000012684) PTGIR (ENSPPRG00000013057) GNG8 (ENSPPRG00000013229) DACT3 (ENSPPRG00000015373) PRKD2 (ENSPPRG00000014664) STRN4 (ENSPPRG00000015890) FKRP (ENSPPRG00000015401) SLC1A5 (ENSPPRG00000017631) ENSPPRG00000019101 AP2S1 (ENSPPRG00000022307) ARHGAP35 (ENSPPRG00000024753) ##22 NPAS1 (ENSPPRG00000023743) TMEM160 (ENSPPRG00000023643) ZC3H4 (ENSPPRG00000023272) SAE1 (ENSPPRG00000000641) BBC3 (ENSPPRG00000000897) CCDC9 (ENSPPRG00000001198) INAFM1 (ENSPPRG00000015681) C5AR1 (ENSPPRG00000015726) C5AR2 (ENSPPRG00000015739) DHX34 (ENSPPRG00000002535) MEIS3 (ENSPPRG00000003182) SLC8A2 (ENSPPRG00000003527) KPTN (ENSPPRG00000004578) NAPA (ENSPPRG00000005495) ZNF541 (ENSPPRG00000006351) Cat MODERN SPECIES 246 HIF3A (ENSFCAG00000014181) PPP5C (ENSFCAG00000014185) PNMA8A (ENSFCAG00000042861) ENSFCAG00000032430 CCDC8 (ENSFCAG00000042508) ENSFCAG00000048982 CALM3 (ENSFCAG00000004995) PTGIR (ENSFCAG00000027533) GNG8 (ENSFCAG00000042245) DACT3 (ENSFCAG00000045800) PRKD2 (ENSFCAG00000010311) STRN4 (ENSFCAG00000000782) FKRP (ENSFCAG00000024153) SLC1A5 (ENSFCAG00000005736) AP2S1 (ENSFCAG00000031554) ARHGAP35 (ENSFCAG00000004831) ##22 NPAS1 (ENSFCAG00000004833) ENSFCAG00000032417 ZC3H4 (ENSFCAG00000004835) SAE1 (ENSFCAG00000027112) BBC3 (ENSFCAG00000040792) CCDC9 (ENSFCAG00000004837) C5AR1 (ENSFCAG00000046725) C5AR2 (ENSFCAG00000043336) DHX34 (ENSFCAG00000006144) MEIS3 (ENSFCAG00000006146) SLC8A2 (ENSFCAG00000029230) KPTN (ENSFCAG00000006149) NAPA (ENSFCAG00000006151) ZNF541 (ENSFCAG00000028959) BICRA (ENSFCAG00000027050) Laurasiatheria_c ANCESTRAL SPECIES 4 ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00710000107236 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Equus ANCESTRAL SPECIES 1 ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00710000107236 ENSGT00530000063950.a.b ENSGT00550000076229 ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Donkey MODERN SPECIES 18 HIF3A (ENSEASG00005003993) PPP5C (ENSEASG00005003995) PNMA8C (ENSEASG00005004006) CCDC8 (ENSEASG00005031475) ENSEASG00005024649 ENSEASG00005036842 CALM3 (ENSEASG00005004012) ENSEASG00005004013 ENSEASG00005004015 DACT3 (ENSEASG00005033792) PRKD2 (ENSEASG00005004020) STRN4 (ENSEASG00005004043) FKRP (ENSEASG00005024317) SLC1A5 (ENSEASG00005004062) ENSEASG00005032304 ARHGAP35 (ENSEASG00005004087) ##22 ENSEASG00005032745 ENSEASG00005004094 ENSEASG00005038114 TMEM160 (ENSEASG00005023909) ZC3H4 (ENSEASG00005004107) SAE1 (ENSEASG00005004124) ENSEASG00005035087 CCDC9 (ENSEASG00005004139) INAFM1 (ENSEASG00005030427) C5AR1 (ENSEASG00005026249) C5AR2 (ENSEASG00005025956) DHX34 (ENSEASG00005004155) MEIS3 (ENSEASG00005004166) ENSEASG00005028907 ENSEASG00005004177 Horse MODERN SPECIES 1 ENSECAG00000012503 HIF3A (ENSECAG00000020693) PPP5C (ENSECAG00000056298) CCDC8 (ENSECAG00000056835) PNMA8C (ENSECAG00000034552) PNMA8A (ENSECAG00000006115) ENSECAG00000060028 CALM3 (ENSECAG00000022442) PTGIR (ENSECAG00000023626) DACT3 (ENSECAG00000026972) PRKD2 (ENSECAG00000024775) STRN4 (ENSECAG00000002830) FKRP (ENSECAG00000010652) SLC1A5 (ENSECAG00000011637) AP2S1 (ENSECAG00000016403) ARHGAP35 (ENSECAG00000017712) ##22 NPAS1 (ENSECAG00000022513) ZC3H4 (ENSECAG00000024342) SAE1 (ENSECAG00000002087) ENSECAG00000031168 CCDC9 (ENSECAG00000008559) C5AR1 (ENSECAG00000006153) C5AR2 (ENSECAG00000006218) DHX34 (ENSECAG00000011354) MEIS3 (ENSECAG00000016791) SLC8A2 (ENSECAG00000008392) KPTN (ENSECAG00000018392) NAPA (ENSECAG00000006959) ZNF541 (ENSECAG00000019417) BICRA (ENSECAG00000030809) EHD2 (ENSECAG00000028265) Chiroptera ANCESTRAL SPECIES 16 ENSGT00390000009557.C ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011.c ENSGT00550000075007 ENSGT00390000002767 ENSGT00710000107236 ENSGT00530000063950.a.b ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 Megabat MODERN SPECIES 668 AP2S1 (ENSPVAG00000005675) ARHGAP35 (ENSPVAG00000005679) ##22 NPAS1 (ENSPVAG00000005682) TMEM160 (ENSPVAG00000005685) ZC3H4 (ENSPVAG00000005687) SAE1 (ENSPVAG00000005690) BBC3 (ENSPVAG00000005692) Microchiroptera ANCESTRAL SPECIES 18 ENSGT00390000009557.B ENSGT00390000009557.C ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.e.b.a.a.b ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011.c ENSGT00550000075007 ENSGT00710000107236 ENSGT00530000063950.a.b ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 ENSGT00940000159112.b Microbat MODERN SPECIES 1672 ENSMLUG00000022578 ENSMLUG00000027160 ARHGAP35 (ENSMLUG00000003739) ##22 TMEM160 (ENSMLUG00000023661) ENSMLUG00000003474 Greater horseshoe bat MODERN SPECIES 6 ENSRFEG00010010556 IGFL1 (ENSRFEG00010010615) HIF3A (ENSRFEG00010010703) PPP5C (ENSRFEG00010011335) PNMA8C (ENSRFEG00010011452) PNMA8B (ENSRFEG00010011467) CALM3 (ENSRFEG00010011490) PTGIR (ENSRFEG00010011682) ENSRFEG00010011776 DACT3 (ENSRFEG00010011826) PRKD2 (ENSRFEG00010011924) STRN4 (ENSRFEG00010012035) FKRP (ENSRFEG00010012506) SLC1A5 (ENSRFEG00010012525) AP2S1 (ENSRFEG00010012755) ARHGAP35 (ENSRFEG00010013104) ##22 NPAS1 (ENSRFEG00010013143) TMEM160 (ENSRFEG00010013212) ZC3H4 (ENSRFEG00010013266) SAE1 (ENSRFEG00010013378) ENSRFEG00010013509 CCDC9 (ENSRFEG00010013812) ENSRFEG00010013918 C5AR1 (ENSRFEG00010013939) ENSRFEG00010013958 C5AR2 (ENSRFEG00010013977) DHX34 (ENSRFEG00010014000) MEIS3 (ENSRFEG00010014079) SLC8A2 (ENSRFEG00010014268) KPTN (ENSRFEG00010014307) NAPA (ENSRFEG00010014363) Atlantogenata ANCESTRAL SPECIES 48 ENSGT00390000009557.C ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.f.b.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 ENSGT00940000159112.b Xenarthra ANCESTRAL SPECIES 1229 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 Sloth MODERN SPECIES 4731 ENSCHOG00000013442 ##22 Armadillo MODERN SPECIES 3940 AP2S1 (ENSDNOG00000046653) ARHGAP35 (ENSDNOG00000007757) ##22 NPAS1 (ENSDNOG00000035321) TMEM160 (ENSDNOG00000045086) Afrotheria ANCESTRAL SPECIES 22 ENSGT00390000009557.B ENSGT00390000009557.C ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 ENSGT00940000159112.b Afrotheria_a ANCESTRAL SPECIES 21 ENSGT00390000009557.B ENSGT00390000009557.C ENSGT00940000161745 ENSGT00940000158785 ENSGT01030000234522.C.b.f.a ENSGT01030000234522.C.b.f.b.b ENSGT00950000182980.a.b.a.a.a ENSGT01050000244902.b.d ENSGT01100000263497.D ENSGT00950000183181.B.b ENSGT00950000183024.a.b.b ENSGT00950000183095.a.b.a.b.a ENSGT00390000017583 ENSGT00940000159485 ENSGT00970000193421.A ENSGT01030000234635.a.b.a.b.b.a.b ##22 ENSGT00940000161295 ENSGT00390000012863 ENSGT00940000160011 ENSGT00550000075007 ENSGT00390000002767 ENSGT00530000063950.a.b ENSGT01100000263564.a.g ENSGT01100000263564.a.h ENSGT00940000158721 ENSGT00940000161057 ENSGT00940000158344.b ENSGT00390000002548 ENSGT00390000005826.a.a ENSGT00940000160330 ENSGT00940000159112.b Elephant MODERN SPECIES 375 IGFL1 (ENSLAFG00000030746) HIF3A (ENSLAFG00000017230) PPP5C (ENSLAFG00000006728) CCDC8 (ENSLAFG00000003049) ENSLAFG00000030061 ENSLAFG00000029507 ENSLAFG00000009288 CALM3 (ENSLAFG00000001155) PTGIR (ENSLAFG00000021881) DACT3 (ENSLAFG00000000449) PRKD2 (ENSLAFG00000021718) STRN4 (ENSLAFG00000004220) FKRP (ENSLAFG00000025662) SLC1A5 (ENSLAFG00000000671) ENSLAFG00000026512 ARHGAP35 (ENSLAFG00000018311) ##22 TMEM160 (ENSLAFG00000014543) ZC3H4 (ENSLAFG00000001586) SAE1 (ENSLAFG00000001593) BBC3 (ENSLAFG00000008852) CCDC9 (ENSLAFG00000026191) C5AR1 (ENSLAFG00000023333) DHX34 (ENSLAFG00000003186) MEIS3 (ENSLAFG00000031905) KPTN (ENSLAFG00000009281) NAPA (ENSLAFG00000009284) ZNF541 (ENSLAFG00000009287) ENSLAFG00000015647 ENSLAFG00000023304 EHD2 (ENSLAFG00000029346) CRX (ENSLAFG00000007254) Hyrax MODERN SPECIES 4358 ARHGAP35 (ENSPCAG00000000715) ##22 ENSPCAG00000000784 TMEM160 (ENSPCAG00000000847) Tenrec MODERN SPECIES 5106 ARHGAP35 (ENSETEG00000009197) ##22 Chordata ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.b ##22 Vertebrata ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.b ##22 Cyclostomata ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.b ##22 Lamprey MODERN SPECIES 4284 ENSPMAG00000001725 ##22 Gnathostomata ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.b ##22 Euteleostomi ANCESTRAL SPECIES 3 ENSGT00950000182919.C #10 ENSGT00940000157315 ENSGT00940000155029.c.a ENSGT00940000155029.d ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000154076.B.b ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000175090 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127 Sarcopterygii ANCESTRAL SPECIES 15 ENSGT00940000153147 #9 ENSGT00940000154808.a.a ENSGT00950000182919.C #10 ENSGT00940000161503 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000154076.B.b ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000175090 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127 Tetrapoda ANCESTRAL SPECIES 6 ENSGT00940000154808.a.a ENSGT00950000182919.C #10 ENSGT00940000161892 #11 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161653 #14 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000154076.B.b ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000175090 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127 Amniota ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.b ##22 Mammalia ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.b ##22 Theria ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.b ##22 Eutheria ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.b ##22 Boreoeutheria ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.b ##22 Laurasiatheria ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.b ##22 Laurasiatheria_a ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.b ##22 Artiodactyla ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.b ##22 Artiodactyla_a ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.b ##22 Artiodactyla_b ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.b ##22 Pecora ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.b ##22 Percora_a ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.b ##22 Siberian musk deer MODERN SPECIES 342 ENSMMSG00000007068 ##9 MTX2 (ENSMMSG00000007226) #10 HOXD1 (ENSMMSG00000007322) #11 HOXD3 (ENSMMSG00000007343) #12 HOXD4 (ENSMMSG00000007365) #13 HOXD8 (ENSMMSG00000007407) #14 HOXD9 (ENSMMSG00000007480) HOXD10 (ENSMMSG00000007495) #15 HOXD11 (ENSMMSG00000007513) #16 HOXD12 (ENSMMSG00000007530) #17 HOXD13 (ENSMMSG00000007541) EVX2 (ENSMMSG00000007555) #18 LNPK (ENSMMSG00000007582) #19 ENSMMSG00000007642 #20 ATF2 (ENSMMSG00000007713) #21 ENSMMSG00000008102 ##22 ENSMMSG00000008116 Laurasiatheria_b ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.b ##22 Carnivora ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.b ##22 Caniformia ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.b ##22 Caniformia_b ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.b ##22 Ursidae ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.b ##22 Ursus ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.b ##22 American black bear MODERN SPECIES 5634 ENSUAMG00000026272 ##22 Euarchontoglires ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.b ##22 Euarchontoglires_A ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.b ##22 Glires ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.b ##22 Rodentia ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.b ##22 Rodentia_A ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.b ##22 Hystricomorpha ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.b ##22 Naked mole-rat female MODERN SPECIES 2 TRPC4 (ENSHGLG00000000330) ENSHGLG00000000363 FREM2 (ENSHGLG00000000398) STOML3 (ENSHGLG00000000438) PROSER1 (ENSHGLG00000000463) ENSHGLG00000000513 ENSHGLG00000020548 ENSHGLG00000003042 ENSHGLG00000003091 ENSHGLG00000003368 ENSHGLG00000003733 FOXO1 (ENSHGLG00000003833) ENSHGLG00000038776 ENSHGLG00000006949 SLC25A15 (ENSHGLG00000040919) ENSHGLG00000034671 ##22 ENSHGLG00000009975 VPS36 (ENSHGLG00000041622) ENSHGLG00000048252 NEK3 (ENSHGLG00000011968) ENSHGLG00000007869 ENSHGLG00000033374 ALG11 (ENSHGLG00000009232) ATP7B (ENSHGLG00000010526) ENSHGLG00000050649 ENSHGLG00000048901 CCDC70 (ENSHGLG00000019810) ENSHGLG00000039522 WDFY2 (ENSHGLG00000002396) ENSHGLG00000003056 ENSHGLG00000003862 Coelacanth MODERN SPECIES 2741 ATP5MC3 (ENSLACG00000006963) #20 ENSLACG00000004713 #21 ENSLACG00000002234 ##22 Actinopterygii ANCESTRAL SPECIES ENSGT00950000182919.C #10 ENSGT00940000157315 ENSGT00940000155029.c.a ENSGT00940000155029.d ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000154076.B.b ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 Reedfish MODERN SPECIES 16 agps (ENSECRG00000007162) #7 nfe2l2a (ENSECRG00000007884) #8 hnrnpa3 (ENSECRG00000007907) mtx2 (ENSECRG00000007929) #10 ENSECRG00000007947 ENSECRG00000007959 hoxd3a (ENSECRG00000007970) #12 hoxd4a (ENSECRG00000007976) #13 ENSECRG00000007986 ENSECRG00000008002 ENSECRG00000008011 hoxd11a (ENSECRG00000008022) #16 lnpa (ENSECRG00000008030) #19 atp5mc3a (ENSECRG00000008050) #20 ATF2 (ENSECRG00000008091) #21 ENSECRG00000008152 ##22 chrna1 (ENSECRG00000008273) #23 chrna1 (ENSECRG00000008656) #23 wipf1a (ENSECRG00000008869) #24 GPR155 (ENSECRG00000008887) #25 scrn3 (ENSECRG00000008922) #26 CIR1 (ENSECRG00000008941) #27 ola1 (ENSECRG00000008966) #29 sp3a (ENSECRG00000008995) #30 ENSECRG00000009009 ENSECRG00000009023 cdca7a (ENSECRG00000009042) #31 ENSECRG00000009066 RAPGEF4 (ENSECRG00000009096) #33 ENSECRG00000009131 PDK1 (ENSECRG00000009187) #34 Neopterygii ANCESTRAL SPECIES 1 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00950000182919.C #10 ENSGT00940000155029.d ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503 ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000154076.B.b ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353.a #35 Osteoglossocephalai ANCESTRAL SPECIES 6 ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859.f #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352.f.a #32 ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 Osteoglossiformes ANCESTRAL SPECIES 86 ENSGT00940000159606 ENSGT00940000158239.a.b.a ENSGT00940000172395 ENSGT00940000154319.c.b ENSGT00940000153534.A ENSGT00390000013916 ENSGT00390000005530.a.a.l ENSGT00950000183046.a.a.gb ENSGT00940000156449.d ENSGT00980000199010 ENSGT00510000047718.c.a ENSGT00950000182895.a.b.u.a ENSGT00390000004977.d.b ENSGT00940000164909.d ENSGT00950000182942.a.b ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851 #23 ENSGT00910000144296.b #24 ENSGT00730000111135 #27 ENSGT00940000162304.b #28 ENSGT00390000000673.a.a ##29 ENSGT00940000154076.B.b ENSGT00940000163262.a ENSGT00940000156075.a.a.k #33 ENSGT00940000164127.b ENSGT01030000234646.B.a.a.b.f #34 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127.e #36 ENSGT00940000160029.b #37 ENSGT00940000157735 ENSGT00940000155963.e.a Asian bonytongue MODERN SPECIES 13 cycsb (ENSSFOG00015001939) ENSSFOG00015001871 agps (ENSSFOG00015028351) #7 nfe2l2a (ENSSFOG00015001827) #8 hnrnpa3 (ENSSFOG00015001814) hoxd3a (ENSSFOG00015001794) #12 hoxd4a (ENSSFOG00015001803) #13 hoxd9a (ENSSFOG00015001780) hoxd10a (ENSSFOG00015001740) #15 hoxd11a (ENSSFOG00015001728) #16 hoxd12a (ENSSFOG00015030881) #17 evx2 (ENSSFOG00015026350) #18 LNPK (ENSSFOG00015027388) #19 atp5mc3a (ENSSFOG00015001666) ##20 ATF2 (ENSSFOG00015001611) #21 ENSSFOG00015001599 ##22 chrna1 (ENSSFOG00015001557) #23 wipf1a (ENSSFOG00015001460) #24 GPR155 (ENSSFOG00015001445) #25 scrn3 (ENSSFOG00015001436) #26 sp9 (ENSSFOG00015032507) #28 SP3 (ENSSFOG00015001390) #30 cdca7a (ENSSFOG00015001326) #31 ENSSFOG00015001261 RAPGEF4 (ENSSFOG00015001161) #33 ENSSFOG00015001152 ITGA6 (ENSSFOG00015001051) #35 DLX2 (ENSSFOG00015032680) #36 dlx1a (ENSSFOG00015030518) #37 hat1 (ENSSFOG00015000974) slc25a12 (ENSSFOG00015000885) Clupeocephala ANCESTRAL SPECIES 3 ENSGT00940000154808.a.a ENSGT00940000159503 ENSGT00940000158354.c.a ENSGT00940000165065.b ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000161352.f.a #32 ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 Euteleosteomorpha ANCESTRAL SPECIES 6 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00940000159503 ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 ENSGT00940000160029 #37 Acanthomorphata ANCESTRAL SPECIES 5 ENSGT00940000157883.a.b.f ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 Euacanthomorphacea ANCESTRAL SPECIES 15 ENSGT00940000157883.a.b.f ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 Percomorphaceae ANCESTRAL SPECIES 23 ENSGT00940000157883.a.b.f ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 Tiger tail seahorse MODERN SPECIES 495 agps (ENSHCOG00000000795) #7 nfe2l2a (ENSHCOG00000009951) #8 HNRNPA3 (ENSHCOG00000000313) #9 hoxd3a (ENSHCOG00000009973) #12 hoxd4a (ENSHCOG00000009984) #13 hoxd9a (ENSHCOG00000009986) hoxd10a (ENSHCOG00000009994) #15 hoxd11a (ENSHCOG00000009999) #16 hoxd12a (ENSHCOG00000010003) #17 evx2 (ENSHCOG00000010011) #18 lnpa (ENSHCOG00000010016) #19 ENSHCOG00000010035 ATF2 (ENSHCOG00000010063) #21 CHN1 (ENSHCOG00000010081) ##22 CHRNA1 (ENSHCOG00000010102) #23 GPR155 (ENSHCOG00000010153) #25 scrn3 (ENSHCOG00000010226) #26 CIR1 (ENSHCOG00000010261) #27 sp9 (ENSHCOG00000010277) #28 sp3a (ENSHCOG00000010295) #30 cdca7a (ENSHCOG00000010316) #31 ENSHCOG00000010364 RAPGEF4 (ENSHCOG00000010417) #33 ENSHCOG00000010435 PDK1 (ENSHCOG00000010494) #34 ENSHCOG00000010505 ENSHCOG00000010525 #35 dlx2b (ENSHCOG00000010542) #36 dlx1a (ENSHCOG00000010561) #37 Percomorphaceae_B ANCESTRAL SPECIES 17 ENSGT00940000157883.a.b.f ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 Ovalentaria ANCESTRAL SPECIES 14 ENSGT00940000157883.a.b.f ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 Atherinomorphae ANCESTRAL SPECIES 13 ENSGT00940000157883.a.b.f ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 Cyprinodontiformes ANCESTRAL SPECIES 15 ENSGT00940000157883.a.b.f.qb ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 ENSGT00940000160029 #37 Aplocheiloidei ANCESTRAL SPECIES 6 ENSGT00940000157883.a.b.f.qb ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 ENSGT00940000160029 #37 Turquoise killifish MODERN SPECIES 1623 HNRNPA3 (ENSNFUG00015023301) ENSNFUG00015023302 ENSNFUG00015023304 HOXD3A (ENSNFUG00015023307) #12 hoxd4a (ENSNFUG00015023309) #13 hoxd9a (ENSNFUG00015023312) hoxd10a (ENSNFUG00015023313) #15 hoxd11a (ENSNFUG00015023314) #16 hoxd12a (ENSNFUG00015023315) #17 EVX2 (ENSNFUG00015023319) #18 LNPA (ENSNFUG00015023321) #19 ENSNFUG00015023348 ATP5G3A (ENSNFUG00015023349) ATF2 (ENSNFUG00015023352) #21 ENSNFUG00015023356 CHN1 (ENSNFUG00015023359) ##22 GPR155A (ENSNFUG00015023367) #25 SCRN3 (ENSNFUG00015023388) #26 CIR1 (ENSNFUG00015023391) #27 SP9 (ENSNFUG00015023394) #28 OLA1 (ENSNFUG00015023399) ##29 SP3A (ENSNFUG00015023413) #30 CDCA7A (ENSNFUG00015023419) #31 ENSNFUG00015023422 RAPGEF4 (ENSNFUG00015023430) #33 Nfu_g_1_017731 (ENSNFUG00015023483) NUP62L (ENSNFUG00015023502) ITGA6A (ENSNFUG00015023504) #35 DLX2A (ENSNFUG00015023590) #36 DLX1A (ENSNFUG00015023592) #37 HAT1 (ENSNFUG00015023596) Mangrove rivulus MODERN SPECIES 66 OSBPL6 (ENSKMAG00000016168) cycsb (ENSKMAG00000016145) ENSKMAG00000016087 agps (ENSKMAG00000016024) #7 nfe2l2a (ENSKMAG00000015997) #8 hnrnpa3 (ENSKMAG00000015973) hoxd4a (ENSKMAG00000015964) #13 hoxd3a (ENSKMAG00000015943) #12 hoxd9a (ENSKMAG00000015921) hoxd10a (ENSKMAG00000015911) #15 hoxd11a (ENSKMAG00000015906) #16 hoxd12a (ENSKMAG00000015886) #17 lnpa (ENSKMAG00000015869) #19 ENSKMAG00000015845 ATF2 (ENSKMAG00000015781) #21 CHN1 (ENSKMAG00000015731) ##22 GPR155 (ENSKMAG00000015700) #25 scrn3 (ENSKMAG00000015666) #26 CIR1 (ENSKMAG00000015637) #27 sp9 (ENSKMAG00000015619) #28 OLA1 (ENSKMAG00000015578) ##29 sp3a (ENSKMAG00000015552) #30 cdca7a (ENSKMAG00000015526) #31 ENSKMAG00000015489 RAPGEF4 (ENSKMAG00000015429) #33 Cyprinodontoidei ANCESTRAL SPECIES 13 ENSGT00940000157883.a.b.f.qb ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000161352.f.a #32 ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 NAME_4 ANCESTRAL SPECIES 32 ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000153147.b #9 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000161352.f.a #32 ENSGT00940000156075.a.a #33 Mummichog MODERN SPECIES 464 ENSFHEG00000005471 ATF2 (ENSFHEG00000005400) #21 CHN1 (ENSFHEG00000005348) ##22 GPR155 (ENSFHEG00000000139) #25 scrn3 (ENSFHEG00000005309) #26 CIR1 (ENSFHEG00000005291) #27 sp9 (ENSFHEG00000005267) #28 OLA1 (ENSFHEG00000000700) ##29 sp3a (ENSFHEG00000005193) #30 cdca7a (ENSFHEG00000005158) #31 ENSFHEG00000005149 Sheepshead minnow MODERN SPECIES 244 nfe2l2a (ENSCVAG00000019007) #8 hnrnpa3 (ENSCVAG00000018995) hoxd3a (ENSCVAG00000018985) #12 hoxd4a (ENSCVAG00000018975) #13 hoxd9a (ENSCVAG00000018964) hoxd10a (ENSCVAG00000018959) #15 hoxd11a (ENSCVAG00000018956) #16 hoxd12a (ENSCVAG00000000494) #17 evx2 (ENSCVAG00000018947) #18 lnpa (ENSCVAG00000018936) #19 ENSCVAG00000018929 ATF2 (ENSCVAG00000018917) #21 ENSCVAG00000018858 ##22 GPR155 (ENSCVAG00000018822) #25 scrn3 (ENSCVAG00000000491) #26 CIR1 (ENSCVAG00000018732) #27 sp9 (ENSCVAG00000018687) #28 OLA1 (ENSCVAG00000018673) ##29 sp3a (ENSCVAG00000018614) #30 cdca7a (ENSCVAG00000000487) #31 MAP3K20 (ENSCVAG00000018582) #32 RAPGEF4 (ENSCVAG00000018570) #33 ENSCVAG00000018478 ENSCVAG00000018466 LONRF1 (ENSCVAG00000000483) DLC1 (ENSCVAG00000018437) SLC44A1 (ENSCVAG00000018295) spock3 (ENSCVAG00000018239) Poeciliinae ANCESTRAL SPECIES ENSGT00940000157883.a.b.f.qb ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 ENSGT00940000160029 #37 Poecilia ANCESTRAL SPECIES 13 ENSGT00940000157883.a.b.f.qb ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 ENSGT00940000160029 #37 NAME_6 ANCESTRAL SPECIES 20 ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000153147.b #9 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000161352.f.a #32 ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 ENSGT00940000160029 #37 Sailfin molly MODERN SPECIES 892 ENSPLAG00000017759 ENSPLAG00000017769 ATF2 (ENSPLAG00000017811) #21 ENSPLAG00000017837 ##22 GPR155 (ENSPLAG00000017848) #25 scrn3 (ENSPLAG00000017859) #26 CIR1 (ENSPLAG00000017906) #27 sp9 (ENSPLAG00000017923) #28 OLA1 (ENSPLAG00000017971) ##29 Amazon molly MODERN SPECIES 268 cycsb (ENSPFOG00000014345) ENSPFOG00000014118 agps (ENSPFOG00000014109) #7 nfe2l2a (ENSPFOG00000014090) #8 hnrnpa3 (ENSPFOG00000014049) hoxd3a (ENSPFOG00000014020) #12 hoxd4a (ENSPFOG00000014015) #13 hoxd9a (ENSPFOG00000024320) hoxd10a (ENSPFOG00000014005) #15 hoxd11a (ENSPFOG00000023998) #16 hoxd12a (ENSPFOG00000013995) #17 evx2 (ENSPFOG00000013984) #18 lnpa (ENSPFOG00000013929) #19 ENSPFOG00000013892 ATF2 (ENSPFOG00000013792) #21 CHN1 (ENSPFOG00000013757) ##22 GPR155 (ENSPFOG00000013585) #25 scrn3 (ENSPFOG00000013537) #26 CIR1 (ENSPFOG00000013476) #27 sp9 (ENSPFOG00000013459) #28 OLA1 (ENSPFOG00000013361) ##29 sp3a (ENSPFOG00000013312) #30 cdca7a (ENSPFOG00000013308) #31 ENSPFOG00000013194 RAPGEF4 (ENSPFOG00000012808) #33 ENSPFOG00000012770 PDK1 (ENSPFOG00000012677) #34 NUP62 (ENSPFOG00000012667) ITGA6 (ENSPFOG00000012352) #35 dlx2b (ENSPFOG00000012325) #36 dlx1a (ENSPFOG00000012313) #37 Guppy MODERN SPECIES 450 cycsb (ENSPREG00000005539) ENSPREG00000005502 agps (ENSPREG00000005459) #7 nfe2l2a (ENSPREG00000005434) #8 hnrnpa3 (ENSPREG00000005411) hoxd3a (ENSPREG00000005385) #12 hoxd4a (ENSPREG00000005380) #13 hoxd9a (ENSPREG00000005374) hoxd10a (ENSPREG00000005368) #15 hoxd11a (ENSPREG00000005358) #16 hoxd12a (ENSPREG00000005352) #17 evx2 (ENSPREG00000005343) #18 lnpa (ENSPREG00000005326) #19 ENSPREG00000005303 ATF2 (ENSPREG00000005281) #21 CHN1 (ENSPREG00000005267) ##22 GPR155 (ENSPREG00000005252) #25 scrn3 (ENSPREG00000005230) #26 CIR1 (ENSPREG00000005205) #27 sp9 (ENSPREG00000005194) #28 OLA1 (ENSPREG00000005171) ##29 sp3a (ENSPREG00000005159) #30 cdca7a (ENSPREG00000005127) #31 ENSPREG00000005053 RAPGEF4 (ENSPREG00000004985) #33 ENSPREG00000004945 PDK1 (ENSPREG00000004884) #34 NUP62 (ENSPREG00000004882) ITGA6 (ENSPREG00000004485) #35 dlx2b (ENSPREG00000004436) #36 dlx1a (ENSPREG00000004430) #37 Platyfish MODERN SPECIES 21 cycsb (ENSXMAG00000010497) ENSXMAG00000023835 agps (ENSXMAG00000000454) #7 nfe2l2a (ENSXMAG00000029295) #8 hnrnpa3 (ENSXMAG00000000439) hoxd4a (ENSXMAG00000022728) #13 hoxd3a (ENSXMAG00000000435) #12 hoxd9a (ENSXMAG00000024351) hoxd10a (ENSXMAG00000000431) #15 hoxd11a (ENSXMAG00000000427) #16 hoxd12a (ENSXMAG00000000425) #17 evx2 (ENSXMAG00000025829) #18 lnpa (ENSXMAG00000000413) #19 ENSXMAG00000000410 ATF2 (ENSXMAG00000000397) #21 CHN1 (ENSXMAG00000000389) ##22 GPR155 (ENSXMAG00000005409) #25 scrn3 (ENSXMAG00000005397) #26 CIR1 (ENSXMAG00000024439) #27 sp9 (ENSXMAG00000026252) #28 OLA1 (ENSXMAG00000005330) ##29 sp3a (ENSXMAG00000005322) #30 cdca7a (ENSXMAG00000005311) #31 ENSXMAG00000005291 RAPGEF4 (ENSXMAG00000005232) #33 ENSXMAG00000005213 PDK1 (ENSXMAG00000005162) #34 NUP62 (ENSXMAG00000005154) ITGA6 (ENSXMAG00000005122) #35 dlx2b (ENSXMAG00000005118) #36 dlx1a (ENSXMAG00000026317) #37 Oryzias ANCESTRAL SPECIES 10 ENSGT00940000157883.a.b.f ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 Oryzias_b ANCESTRAL SPECIES 10 ENSGT00940000157883.a.b.f ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 Indian medaka MODERN SPECIES 18 cycsb (ENSOMEG00000005020) ENSOMEG00000004995 agps (ENSOMEG00000004912) #7 nfe2l2a (ENSOMEG00000004847) #8 hnrnpa3 (ENSOMEG00000004838) hoxd3a (ENSOMEG00000004819) #12 hoxd4a (ENSOMEG00000004802) #13 hoxd9a (ENSOMEG00000004787) hoxd10a (ENSOMEG00000004774) #15 hoxd11a (ENSOMEG00000004768) #16 hoxd12a (ENSOMEG00000004758) #17 evx2 (ENSOMEG00000004750) #18 lnpa (ENSOMEG00000004732) #19 ENSOMEG00000004706 ATF2 (ENSOMEG00000004661) #21 ENSOMEG00000000749 ##22 CHRNA1 (ENSOMEG00000004572) #23 GPR155 (ENSOMEG00000004547) #25 scrn3 (ENSOMEG00000004529) #26 CIR1 (ENSOMEG00000004511) #27 sp9 (ENSOMEG00000004478) #28 OLA1 (ENSOMEG00000004469) ##29 sp3a (ENSOMEG00000004413) #30 cdca7a (ENSOMEG00000004393) #31 ENSOMEG00000004356 RAPGEF4 (ENSOMEG00000004290) #33 ENSOMEG00000004239 PDK1 (ENSOMEG00000004194) #34 NUP62 (ENSOMEG00000004153) ITGA6 (ENSOMEG00000004142) #35 dlx2b (ENSOMEG00000004095) #36 Javanese ricefish MODERN SPECIES 13 cycsb (ENSOJAG00000023613) ENSOJAG00000023620 agps (ENSOJAG00000023690) #7 nfe2l2a (ENSOJAG00000023772) #8 hnrnpa3 (ENSOJAG00000023773) hoxd3a (ENSOJAG00000023775) #12 hoxd4a (ENSOJAG00000023776) #13 hoxd9a (ENSOJAG00000023777) hoxd10a (ENSOJAG00000023778) #15 hoxd11a (ENSOJAG00000023779) #16 hoxd12a (ENSOJAG00000023780) #17 evx2 (ENSOJAG00000023781) #18 lnpa (ENSOJAG00000023782) #19 ENSOJAG00000023788 ATF2 (ENSOJAG00000023791) #21 ENSOJAG00000023792 ##22 CHRNA1 (ENSOJAG00000023796) #23 ENSOJAG00000023799 GPR155 (ENSOJAG00000023801) #25 scrn3 (ENSOJAG00000023807) #26 CIR1 (ENSOJAG00000023810) #27 sp9 (ENSOJAG00000023819) #28 OLA1 (ENSOJAG00000023824) ##29 sp3a (ENSOJAG00000023832) #30 cdca7a (ENSOJAG00000023834) #31 ENSOJAG00000023836 ENSOJAG00000023850 PDK1 (ENSOJAG00000023861) #34 ENSOJAG00000023864 ENSOJAG00000023866 #35 ENSOJAG00000023868 #35 Oryzias_a ANCESTRAL SPECIES 21 ENSGT00940000157883.a.b.f ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000167119 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 Chinese medaka MODERN SPECIES 394 cycsb (ENSOSIG00000000762) ENSOSIG00000000629 agps (ENSOSIG00000000574) #7 nfe2l2a (ENSOSIG00000000556) #8 hnrnpa3 (ENSOSIG00000000549) hoxd3a (ENSOSIG00000000546) #12 hoxd4a (ENSOSIG00000000543) #13 hoxd9a (ENSOSIG00000000542) hoxd10a (ENSOSIG00000000541) #15 hoxd11a (ENSOSIG00000000539) #16 hoxd12a (ENSOSIG00000000537) #17 evx2 (ENSOSIG00000000535) #18 lnpa (ENSOSIG00000000282) #19 ENSOSIG00000000219 ATF2 (ENSOSIG00000000188) #21 CHN1 (ENSOSIG00000023518) ##22 CHRNA1 (ENSOSIG00000023517) #23 GPR155 (ENSOSIG00000023514) #25 scrn3 (ENSOSIG00000023512) #26 CIR1 (ENSOSIG00000023510) #27 sp9 (ENSOSIG00000023509) #28 OLA1 (ENSOSIG00000023496) ##29 sp3a (ENSOSIG00000023470) #30 cdca7a (ENSOSIG00000023467) #31 ENSOSIG00000023466 RAPGEF4 (ENSOSIG00000023340) #33 ENSOSIG00000023240 PDK1 (ENSOSIG00000023172) #34 ENSOSIG00000023155 ITGA6 (ENSOSIG00000023151) #35 dlx2b (ENSOSIG00000023141) #36 Japanese Medaka HdrR MODERN SPECIES 13 cycsb (ENSORLG00000027899) ENSORLG00000024999 agps (ENSORLG00000017577) #7 nfe2l2a (ENSORLG00000017568) #8 hnrnpa3 (ENSORLG00000017561) hoxd3a (ENSORLG00000017546) #12 hoxd4a (ENSORLG00000017548) #13 hoxd9a (ENSORLG00000017540) #15 hoxd11a (ENSORLG00000017538) #16 hoxd12a (ENSORLG00000017536) #17 evx2 (ENSORLG00000017534) #18 lnpa (ENSORLG00000017531) #19 ENSORLG00000029959 ENSORLG00000022474 ATF2 (ENSORLG00000017522) #21 CHN1 (ENSORLG00000017518) ##22 CHRNA1 (ENSORLG00000017512) #23 GPR155 (ENSORLG00000017509) #25 scrn3 (ENSORLG00000017501) #26 CIR1 (ENSORLG00000017496) #27 sp9 (ENSORLG00000017492) #28 OLA1 (ENSORLG00000017489) ##29 sp3a (ENSORLG00000017474) #30 cdca7a (ENSORLG00000017471) #31 ENSORLG00000017462 RAPGEF4 (ENSORLG00000030282) #33 RAPGEF4 (ENSORLG00000017451) #33 ENSORLG00000017434 PDK1 (ENSORLG00000017416) #34 ENSORLG00000017400 ITGA6 (ENSORLG00000017395) #35 Ovalentaria_B ANCESTRAL SPECIES 12 ENSGT00940000157883.a.b.f ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000161352.f.a #32 ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 Pomacentridae ANCESTRAL SPECIES 17 ENSGT00940000157883.a.b.f ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 Pomacentridae_A ANCESTRAL SPECIES 14 ENSGT00940000157883.a.b.f ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 Amphiprion ANCESTRAL SPECIES 8 ENSGT00940000157883.a.b.f ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 Clown anemonefish DUPLICATION Clown anemonefish MODERN SPECIES 692 ENSAOCG00000019956 ##22 tpd52l1 (ENSAOCG00000019901) rnf217 (ENSAOCG00000019870) nkain2 (ENSAOCG00000019855) Clown anemonefish MODERN SPECIES 1671 cycsb (ENSAOCG00000000127) ENSAOCG00000000142 agps (ENSAOCG00000004061) #7 nfe2l2a (ENSAOCG00000004080) #8 hnrnpa3 (ENSAOCG00000004095) hoxd3a (ENSAOCG00000004108) #12 hoxd4a (ENSAOCG00000004119) #13 hoxd9a (ENSAOCG00000004139) hoxd10a (ENSAOCG00000000148) #15 hoxd11a (ENSAOCG00000004171) #16 hoxd12a (ENSAOCG00000004179) #17 evx2 (ENSAOCG00000004188) #18 lnpa (ENSAOCG00000004196) #19 ENSAOCG00000004206 ATF2 (ENSAOCG00000004218) #21 ENSAOCG00000004256 ##22 CHRNA1 (ENSAOCG00000000151) #23 Orange clownfish MODERN SPECIES 3 cycsb (ENSAPEG00000022678) ENSAPEG00000022643 agps (ENSAPEG00000022568) #7 nfe2l2a (ENSAPEG00000022542) #8 hnrnpa3 (ENSAPEG00000022522) hoxd3a (ENSAPEG00000022493) #12 hoxd4a (ENSAPEG00000022483) #13 hoxd9a (ENSAPEG00000022404) hoxd10a (ENSAPEG00000022375) #15 hoxd11a (ENSAPEG00000022361) #16 hoxd12a (ENSAPEG00000022350) #17 evx2 (ENSAPEG00000022340) #18 lnpa (ENSAPEG00000022331) #19 ENSAPEG00000022317 ATF2 (ENSAPEG00000022256) #21 ENSAPEG00000022232 ##22 CHRNA1 (ENSAPEG00000022209) #23 GPR155 (ENSAPEG00000022183) #25 scrn3 (ENSAPEG00000022151) #26 CIR1 (ENSAPEG00000022133) #27 sp9 (ENSAPEG00000022126) #28 OLA1 (ENSAPEG00000022047) ##29 sp3a (ENSAPEG00000022033) #30 cdca7a (ENSAPEG00000022024) #31 ENSAPEG00000021988 RAPGEF4 (ENSAPEG00000021904) #33 ENSAPEG00000021856 PDK1 (ENSAPEG00000021833) #34 NUP62 (ENSAPEG00000021815) ITGA6 (ENSAPEG00000021670) #35 dlx2b (ENSAPEG00000021637) #36 Spiny chromis MODERN SPECIES 344 hoxd4a (ENSAPOG00000015271) #13 hoxd3a (ENSAPOG00000015295) #12 hoxd9a (ENSAPOG00000015357) hoxd10a (ENSAPOG00000015402) #15 hoxd11a (ENSAPOG00000015458) #16 hoxd12a (ENSAPOG00000015474) #17 evx2 (ENSAPOG00000015487) #18 lnpa (ENSAPOG00000015543) #19 ENSAPOG00000015576 ATF2 (ENSAPOG00000015649) #21 ENSAPOG00000000432 ##22 CHRNA1 (ENSAPOG00000015749) #23 GPR155 (ENSAPOG00000015767) #25 scrn3 (ENSAPOG00000015800) #26 CIR1 (ENSAPOG00000015805) #27 sp9 (ENSAPOG00000015813) #28 OLA1 (ENSAPOG00000015861) ##29 sp3a (ENSAPOG00000015875) #30 cdca7a (ENSAPOG00000015891) #31 ENSAPOG00000015981 RAPGEF4 (ENSAPOG00000016100) #33 ENSAPOG00000016122 Bicolor damselfish MODERN SPECIES 1569 CHN1 (ENSSPAG00000000280) ##22 CHRNA1 (ENSSPAG00000000316) #23 GPR155 (ENSSPAG00000000364) #25 scrn3 (ENSSPAG00000000374) #26 CIR1 (ENSSPAG00000000400) #27 sp9 (ENSSPAG00000000406) #28 OLA1 (ENSSPAG00000000415) ##29 sp3a (ENSSPAG00000000481) #30 cdca7a (ENSSPAG00000000499) #31 Cichlidae ANCESTRAL SPECIES 14 ENSGT00940000157883.a.b.f ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000161352.f.a #32 ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 Pseudocrenilabrinae ANCESTRAL SPECIES 15 ENSGT00940000157883.a.b.f ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c.d #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000161352.f.a #32 ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 Pseudocrenilabrinae_A ANCESTRAL SPECIES 14 ENSGT00940000157883.a.b.f ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c.d #25 ENSGT00390000004153.c.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000161352.f.a #32 ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 Haplochromini ANCESTRAL SPECIES 19 ENSGT00940000157883.a.b.f ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c.d #25 ENSGT00390000004153.c.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 Burton s mouthbrooder MODERN SPECIES 311 cycsb (ENSHBUG00000019969) ENSHBUG00000019959 agps (ENSHBUG00000019890) #7 nfe2l2a (ENSHBUG00000019783) #8 hnrnpa3 (ENSHBUG00000019734) hoxd3a (ENSHBUG00000019721) #12 hoxd4a (ENSHBUG00000019706) #13 hoxd9a (ENSHBUG00000019700) hoxd10a (ENSHBUG00000019695) #15 hoxd11a (ENSHBUG00000019686) #16 hoxd12a (ENSHBUG00000019677) #17 evx2 (ENSHBUG00000019668) #18 lnpa (ENSHBUG00000019639) #19 ENSHBUG00000019616 ATF2 (ENSHBUG00000019585) #21 CHN1 (ENSHBUG00000019527) ##22 CHRNA1 (ENSHBUG00000019492) #23 GPR155 (ENSHBUG00000019481) #25 scrn3 (ENSHBUG00000019469) #26 CIR1 (ENSHBUG00000019451) #27 sp9 (ENSHBUG00000019442) #28 OLA1 (ENSHBUG00000019432) ##29 sp3a (ENSHBUG00000019358) #30 cdca7a (ENSHBUG00000019346) #31 ENSHBUG00000000572 RAPGEF4 (ENSHBUG00000019169) #33 ENSHBUG00000019008 PDK1 (ENSHBUG00000018972) #34 NUP62 (ENSHBUG00000018934) ITGA6 (ENSHBUG00000018922) #35 dlx2 (ENSHBUG00000018897) #36 Haplochromini_A ANCESTRAL SPECIES 19 ENSGT00940000157883.a.b.f ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c.d #25 ENSGT00390000004153.c.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 P. nyererei MODERN SPECIES 304 cycsb (ENSPNYG00000008720) ENSPNYG00000008651 agps (ENSPNYG00000008574) #7 nfe2l2a (ENSPNYG00000008539) #8 hnrnpa3 (ENSPNYG00000008424) hoxd4a (ENSPNYG00000008399) #13 hoxd3a (ENSPNYG00000008361) #12 hoxd9a (ENSPNYG00000008331) hoxd10a (ENSPNYG00000008321) #15 hoxd11a (ENSPNYG00000008301) #16 hoxd12a (ENSPNYG00000008289) #17 evx2 (ENSPNYG00000008275) #18 lnpa (ENSPNYG00000008259) #19 ENSPNYG00000008239 ATF2 (ENSPNYG00000008206) #21 CHN1 (ENSPNYG00000008179) ##22 CHRNA1 (ENSPNYG00000008079) #23 GPR155 (ENSPNYG00000008006) #25 scrn3 (ENSPNYG00000007975) #26 CIR1 (ENSPNYG00000007957) #27 sp9 (ENSPNYG00000007944) #28 OLA1 (ENSPNYG00000007912) ##29 sp3a (ENSPNYG00000007887) #30 cdca7a (ENSPNYG00000007860) #31 MAP3K20 (ENSPNYG00000007810) #32 RAPGEF4 (ENSPNYG00000007721) #33 ENSPNYG00000007590 PDK1 (ENSPNYG00000007542) #34 ENSPNYG00000007522 ITGA6 (ENSPNYG00000007378) #35 dlx2b (ENSPNYG00000007264) #36 Haplochromini_B ANCESTRAL SPECIES 17 ENSGT00940000157883.a.b.f ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c.d #25 ENSGT00390000004153.c.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 Eastern happy MODERN SPECIES 7 ENSACLG00000008429 ENSACLG00000008459 agps (ENSACLG00000008469) #7 nfe2l2a (ENSACLG00000008524) #8 hnrnpa3 (ENSACLG00000008532) hoxd3a (ENSACLG00000009027) #12 hoxd4a (ENSACLG00000009044) #13 hoxd9a (ENSACLG00000009056) hoxd10a (ENSACLG00000009061) #15 hoxd11a (ENSACLG00000009065) #16 hoxd12a (ENSACLG00000009072) #17 evx2 (ENSACLG00000009083) #18 lnpa (ENSACLG00000009107) #19 ENSACLG00000009187 ATF2 (ENSACLG00000009228) #21 ENSACLG00000009384 ##22 CHRNA1 (ENSACLG00000009413) #23 GPR155 (ENSACLG00000009422) #25 ENSACLG00000009438 #25 scrn3 (ENSACLG00000009456) #26 CIR1 (ENSACLG00000009479) #27 sp9 (ENSACLG00000009491) #28 OLA1 (ENSACLG00000009505) ##29 sp3a (ENSACLG00000009553) #30 cdca7a (ENSACLG00000009560) #31 ENSACLG00000009569 RAPGEF4 (ENSACLG00000009615) #33 ENSACLG00000009705 PDK1 (ENSACLG00000009721) #34 NUP62 (ENSACLG00000009731) ITGA6 (ENSACLG00000009750) #35 Zebra mbuna MODERN SPECIES 1098 ENSMZEG00005004557 ENSMZEG00005004570 agps (ENSMZEG00005004577) #7 nfe2l2a (ENSMZEG00005004652) #8 hnrnpa3 (ENSMZEG00005004663) hoxd3a (ENSMZEG00005004686) #12 hoxd4a (ENSMZEG00005004708) #13 hoxd9a (ENSMZEG00005004755) hoxd10a (ENSMZEG00005004758) #15 hoxd11a (ENSMZEG00005004769) #16 hoxd12a (ENSMZEG00005004776) #17 evx2 (ENSMZEG00005004784) #18 lnpa (ENSMZEG00005004801) #19 ENSMZEG00005004810 ATF2 (ENSMZEG00005004846) #21 ENSMZEG00005004874 ##22 CHRNA1 (ENSMZEG00005004898) #23 GPR155 (ENSMZEG00005004929) #25 scrn3 (ENSMZEG00005004965) #26 CIR1 (ENSMZEG00005004982) #27 sp9 (ENSMZEG00005004992) #28 OLA1 (ENSMZEG00005005008) ##29 sp3a (ENSMZEG00005005039) #30 cdca7a (ENSMZEG00005005048) #31 ENSMZEG00005005065 RAPGEF4 (ENSMZEG00005005135) #33 ENSMZEG00005005208 PDK1 (ENSMZEG00005005243) #34 NUP62 (ENSMZEG00005005282) ITGA6 (ENSMZEG00005005298) #35 dlx2b (ENSMZEG00005005347) #36 Lyretail cichlid MODERN SPECIES 303 cycsb (ENSNBRG00000010901) ENSNBRG00000010922 agps (ENSNBRG00000010969) #7 nfe2l2a (ENSNBRG00000011018) #8 HNRNPA1L3 (ENSNBRG00000011082) hoxd3a (ENSNBRG00000011248) #12 hoxd4a (ENSNBRG00000011276) #13 hoxd9a (ENSNBRG00000011305) hoxd10a (ENSNBRG00000011309) #15 hoxd11a (ENSNBRG00000011341) #16 hoxd12a (ENSNBRG00000011364) #17 evx2 (ENSNBRG00000011378) #18 lnpa (ENSNBRG00000011403) #19 ENSNBRG00000011428 ATF2 (ENSNBRG00000011448) #21 ENSNBRG00000011504 ##22 CHRNA1 (ENSNBRG00000011535) #23 GPR155 (ENSNBRG00000011562) #25 ENSNBRG00000011602 #25 scrn3 (ENSNBRG00000011629) #26 CIR1 (ENSNBRG00000011656) #27 sp9 (ENSNBRG00000011681) #28 OLA1 (ENSNBRG00000011698) ##29 sp3a (ENSNBRG00000011729) #30 cdca7a (ENSNBRG00000011744) #31 MAP3K20 (ENSNBRG00000011776) #32 RAPGEF4 (ENSNBRG00000011826) #33 ENSNBRG00000011903 PDK1 (ENSNBRG00000011921) #34 NUP62 (ENSNBRG00000011951) ITGA6 (ENSNBRG00000011975) #35 Nile tilapia MODERN SPECIES 7 ENSONIG00000008590 agps (ENSONIG00000008600) #7 nfe2l2a (ENSONIG00000008604) #8 hnrnpa3 (ENSONIG00000008607) hoxd4a (ENSONIG00000008612) #13 hoxd3a (ENSONIG00000008610) #12 hoxd9 (ENSONIG00000035114) hoxd10a (ENSONIG00000008614) #15 hoxd11 (ENSONIG00000040380) #16 hoxd12 (ENSONIG00000032619) #17 evx2 (ENSONIG00000008619) #18 lnpa (ENSONIG00000008621) #19 ENSONIG00000034657 ENSONIG00000008625 ATF2 (ENSONIG00000008629) #21 CHN1 (ENSONIG00000008634) ##22 CHRNA1 (ENSONIG00000008636) #23 GPR155 (ENSONIG00000039357) #25 GPR155 (ENSONIG00000039647) #25 scrn3 (ENSONIG00000008648) #26 CIR1 (ENSONIG00000008652) #27 sp9 (ENSONIG00000008657) #28 OLA1 (ENSONIG00000033011) ##29 sp3a (ENSONIG00000008666) #30 cdca7a (ENSONIG00000008671) #31 MAP3K20 (ENSONIG00000008674) #32 RAPGEF4 (ENSONIG00000008678) #33 PDK1 (ENSONIG00000008703) #34 ENSONIG00000008710 ITGA6 (ENSONIG00000008711) #35 dlx2 (ENSONIG00000027504) #36 Midas cichlid MODERN SPECIES 998 cycsb (ENSACIG00000020213) ENSACIG00000020221 agps (ENSACIG00000020269) #7 nfe2l2a (ENSACIG00000020313) #8 ENSACIG00000020389 hoxd3a (ENSACIG00000020552) #12 hoxd4a (ENSACIG00000020571) #13 hoxd9a (ENSACIG00000020595) hoxd10a (ENSACIG00000020621) #15 hoxd11a (ENSACIG00000020645) #16 hoxd12a (ENSACIG00000020660) #17 evx2 (ENSACIG00000020665) #18 lnpa (ENSACIG00000000204) #19 ENSACIG00000000388 ATF2 (ENSACIG00000000401) #21 CHN1 (ENSACIG00000000442) ##22 CHRNA1 (ENSACIG00000000472) #23 GPR155 (ENSACIG00000000582) #25 scrn3 (ENSACIG00000000611) #26 CIR1 (ENSACIG00000000633) #27 sp9 (ENSACIG00000000665) #28 OLA1 (ENSACIG00000000692) ##29 sp3a (ENSACIG00000000727) #30 cdca7a (ENSACIG00000000769) #31 ENSACIG00000000801 RAPGEF4 (ENSACIG00000000843) #33 ENSACIG00000000920 PDK1 (ENSACIG00000000972) #34 NUP62 (ENSACIG00000001003) ITGA6 (ENSACIG00000001038) #35 dlx2b (ENSACIG00000001103) #36 Percomorphaceae_C ANCESTRAL SPECIES 13 ENSGT00940000157883.a.b.f ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 Percomorphaceae_D ANCESTRAL SPECIES 12 ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000153147.b #9 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 Carangaria ANCESTRAL SPECIES 12 ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000153147.b #9 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 Carangaria_A ANCESTRAL SPECIES 11 ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000153147.b #9 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 Seriola ANCESTRAL SPECIES 6 ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000153147.b #9 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 Greater amberjack MODERN SPECIES 21 cycsb (ENSSDUG00000000582) ENSSDUG00000000510 agps (ENSSDUG00000000434) #7 nfe2l2a (ENSSDUG00000000407) #8 hnrnpa3 (ENSSDUG00000000381) hoxd3a (ENSSDUG00000000363) #12 hoxd4a (ENSSDUG00000000306) #13 hoxd9a (ENSSDUG00000000299) hoxd10a (ENSSDUG00000000236) #15 hoxd11a (ENSSDUG00000000198) #16 evx2 (ENSSDUG00000000177) #18 hoxd12a (ENSSDUG00000000155) #17 lnpa (ENSSDUG00000000147) #19 ENSSDUG00000000095 ATF2 (ENSSDUG00000021617) #21 ENSSDUG00000021597 ##22 CHRNA1 (ENSSDUG00000021553) #23 GPR155 (ENSSDUG00000021535) #25 scrn3 (ENSSDUG00000021519) #26 CIR1 (ENSSDUG00000021504) #27 sp9 (ENSSDUG00000021497) #28 OLA1 (ENSSDUG00000021482) ##29 sp3a (ENSSDUG00000021469) #30 cdca7a (ENSSDUG00000021460) #31 ENSSDUG00000021404 RAPGEF4 (ENSSDUG00000021283) #33 ENSSDUG00000021136 PDK1 (ENSSDUG00000021107) #34 NUP62 (ENSSDUG00000021072) ITGA6 (ENSSDUG00000020979) #35 dlx2b (ENSSDUG00000020939) #36 Yellowtail amberjack MODERN SPECIES 2712 agps (ENSSLDG00000019037) #7 nfe2l2a (ENSSLDG00000019015) #8 HNRNPA3 (ENSSLDG00000018999) #9 hoxd4a (ENSSLDG00000018988) #13 hoxd3a (ENSSLDG00000018953) #12 hoxd9a (ENSSLDG00000018936) hoxd10a (ENSSLDG00000018926) #15 hoxd11a (ENSSLDG00000018913) #16 hoxd12a (ENSSLDG00000018902) #17 evx2 (ENSSLDG00000018892) #18 lnpa (ENSSLDG00000018850) #19 ENSSLDG00000018828 ATF2 (ENSSLDG00000018768) #21 ENSSLDG00000018722 ##22 CHRNA1 (ENSSLDG00000018697) #23 GPR155 (ENSSLDG00000018668) #25 scrn3 (ENSSLDG00000018646) #26 CIR1 (ENSSLDG00000018620) #27 sp9 (ENSSLDG00000018604) #28 OLA1 (ENSSLDG00000018580) ##29 sp3a (ENSSLDG00000018541) #30 Barramundi perch DUPLICATION Barramundi perch MODERN SPECIES 64 cycsb (ENSLCAG00010016816) ENSLCAG00010016753 agps (ENSLCAG00010016351) #7 nfe2l2a (ENSLCAG00010016249) #8 HNRNPA3 (ENSLCAG00010016245) #9 hoxd3a (ENSLCAG00010016238) #12 hoxd4a (ENSLCAG00010016232) #13 hoxd9a (ENSLCAG00010016229) hoxd10a (ENSLCAG00010016226) #15 hoxd11a (ENSLCAG00010016223) #16 hoxd12a (ENSLCAG00010016220) #17 evx2 (ENSLCAG00010016217) #18 lnpa (ENSLCAG00010016215) #19 ENSLCAG00010016190 ATF2 (ENSLCAG00010016171) #21 ENSLCAG00010016163 ##22 CHRNA1 (ENSLCAG00010016148) #23 GPR155 (ENSLCAG00010016029) #25 scrn3 (ENSLCAG00010015988) #26 CIR1 (ENSLCAG00010015983) #27 sp9 (ENSLCAG00010015980) #28 OLA1 (ENSLCAG00010015840) ##29 sp3a (ENSLCAG00010015799) #30 Barramundi perch MODERN SPECIES 1739 ENSLCAG00010025454 ##22 Pleuronectoidei ANCESTRAL SPECIES 9 ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000153147.b #9 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 Tongue sole MODERN SPECIES 7 dnajc15 (ENSCSEG00000005668) sestd1 (ENSCSEG00000005650) agps (ENSCSEG00000005635) #7 nfe2l2a (ENSCSEG00000005621) #8 HNRNPA3 (ENSCSEG00000005613) #9 hoxd4a (ENSCSEG00000005611) #13 hoxd3a (ENSCSEG00000005607) #12 hoxd9a (ENSCSEG00000005605) hoxd10a (ENSCSEG00000005599) #15 hoxd11a (ENSCSEG00000005596) #16 hoxd12a (ENSCSEG00000005593) #17 evx2 (ENSCSEG00000005590) #18 lnpa (ENSCSEG00000005584) #19 ENSCSEG00000005581 ATF2 (ENSCSEG00000005568) #21 ENSCSEG00000005562 ##22 CHRNA1 (ENSCSEG00000005556) #23 GPR155 (ENSCSEG00000005546) #25 scrn3 (ENSCSEG00000005538) #26 CIR1 (ENSCSEG00000005531) #27 sp9 (ENSCSEG00000005525) #28 OLA1 (ENSCSEG00000005504) ##29 sp3a (ENSCSEG00000005494) #30 cdca7a (ENSCSEG00000005485) #31 ENSCSEG00000005475 RAPGEF4 (ENSCSEG00000005460) #33 ENSCSEG00000005448 PDK1 (ENSCSEG00000005442) #34 NUP62 (ENSCSEG00000005439) ITGA6 (ENSCSEG00000005423) #35 sox21b (ENSCSEG00000005421) Turbot MODERN SPECIES 5 ENSSMAG00000032684 ENSSMAG00000015360 agps (ENSSMAG00000015285) #7 nfe2l2a (ENSSMAG00000015270) #8 hnrnpa3 (ENSSMAG00000015218) hoxd3a (ENSSMAG00000015192) #12 hoxd4a (ENSSMAG00000015208) #13 hoxd9a (ENSSMAG00000015178) hoxd10a (ENSSMAG00000015175) #15 hoxd11a (ENSSMAG00000015168) #16 hoxd12a (ENSSMAG00000015157) #17 evx2 (ENSSMAG00000022153) #18 lnpa (ENSSMAG00000015112) #19 ENSSMAG00000015084 ATF2 (ENSSMAG00000015045) #21 ENSSMAG00000015017 ##22 CHRNA1 (ENSSMAG00000014996) #23 GPR155 (ENSSMAG00000014982) #25 scrn3 (ENSSMAG00000014971) #26 CIR1 (ENSSMAG00000014954) #27 sp9 (ENSSMAG00000033619) #28 OLA1 (ENSSMAG00000014909) ##29 sp3a (ENSSMAG00000014894) #30 cdca7a (ENSSMAG00000014873) #31 ENSSMAG00000014841 RAPGEF4 (ENSSMAG00000014727) #33 PDK1 (ENSSMAG00000014513) #34 ENSSMAG00000014503 ITGA6 (ENSSMAG00000014425) #35 DLX2 (ENSSMAG00000032136) #36 DLX1 (ENSSMAG00000014398) #37 Anabantaria ANCESTRAL SPECIES 14 ENSGT00940000156791 ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 Anabantoidei ANCESTRAL SPECIES 13 ENSGT00940000156791 ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 Climbing perch MODERN SPECIES 12 ENSATEG00000015064 ENSATEG00000015193 agps (ENSATEG00000015253) #7 nfe2l2a (ENSATEG00000015291) #8 hnrnpa3 (ENSATEG00000015304) hoxd3a (ENSATEG00000015328) #12 hoxd4a (ENSATEG00000026293) #13 hoxd9a (ENSATEG00000015352) hoxd10a (ENSATEG00000015361) #15 hoxd11a (ENSATEG00000015366) #16 hoxd12a (ENSATEG00000015376) #17 evx2 (ENSATEG00000015390) #18 lnpa (ENSATEG00000015400) #19 ENSATEG00000029057 ATF2 (ENSATEG00000015430) #21 ENSATEG00000026639 ##22 CHRNA1 (ENSATEG00000015509) #23 GPR155 (ENSATEG00000015655) #25 scrn3 (ENSATEG00000015681) #26 CIR1 (ENSATEG00000015707) #27 sp9 (ENSATEG00000015749) #28 OLA1 (ENSATEG00000015763) ##29 sp3a (ENSATEG00000015786) #30 cdca7a (ENSATEG00000015798) #31 ENSATEG00000015817 RAPGEF4 (ENSATEG00000015921) #33 ENSATEG00000015976 PDK1 (ENSATEG00000016030) #34 ENSATEG00000016102 ITGA6 (ENSATEG00000016058) #35 DLX2 (ENSATEG00000016108) #36 Siamese fighting fish MODERN SPECIES 11 OSBPL6 (ENSBSLG00000026120) ENSBSLG00000026217 agps (ENSBSLG00000026249) #7 nfe2l2a (ENSBSLG00000026266) #8 hnrnpa1b (ENSBSLG00000026269) hoxd3a (ENSBSLG00000026271) #12 hoxd4a (ENSBSLG00000026272) #13 hoxd9a (ENSBSLG00000026273) hoxd10a (ENSBSLG00000026275) #15 hoxd11a (ENSBSLG00000026276) #16 hoxd12a (ENSBSLG00000026277) #17 evx2 (ENSBSLG00000026279) #18 lnpa (ENSBSLG00000004925) #19 ENSBSLG00000004975 ATF2 (ENSBSLG00000005177) #21 ENSBSLG00000005277 ##22 GPR155 (ENSBSLG00000005380) #25 scrn3 (ENSBSLG00000005638) #26 CIR1 (ENSBSLG00000005674) #27 sp9 (ENSBSLG00000005746) #28 OLA1 (ENSBSLG00000005777) ##29 ENSBSLG00000005979 sp3a (ENSBSLG00000006328) #30 cdca7a (ENSBSLG00000006377) #31 ENSBSLG00000006526 RAPGEF4 (ENSBSLG00000006866) #33 ENSBSLG00000007427 PDK1 (ENSBSLG00000007834) #34 NUP62 (ENSBSLG00000008088) ITGA6 (ENSBSLG00000008101) #35 dlx2b (ENSBSLG00000008933) #36 Zig-zag eel MODERN SPECIES 13 ENSMAMG00000006471 ENSMAMG00000006431 agps (ENSMAMG00000006371) #7 nfe2l2a (ENSMAMG00000025109) #8 hnrnpa3 (ENSMAMG00000006307) hoxd4a (ENSMAMG00000006292) #13 hoxd3a (ENSMAMG00000006302) #12 hoxd9a (ENSMAMG00000006260) hoxd10a (ENSMAMG00000006254) #15 hoxd11a (ENSMAMG00000028586) #16 hoxd12a (ENSMAMG00000006228) #17 evx2 (ENSMAMG00000006208) #18 lnpa (ENSMAMG00000006198) #19 ENSMAMG00000006164 ATF2 (ENSMAMG00000006094) #21 CHN1 (ENSMAMG00000006062) ##22 CHRNA1 (ENSMAMG00000006042) #23 GPR155 (ENSMAMG00000006021) #25 scrn3 (ENSMAMG00000006006) #26 CIR1 (ENSMAMG00000027416) #27 sp9 (ENSMAMG00000005995) #28 OLA1 (ENSMAMG00000005934) ##29 sp3a (ENSMAMG00000005903) #30 cdca7a (ENSMAMG00000005873) #31 ENSMAMG00000005850 RAPGEF4 (ENSMAMG00000005778) #33 ENSMAMG00000005735 PDK1 (ENSMAMG00000005692) #34 ENSMAMG00000005685 ITGA6 (ENSMAMG00000005598) #35 DLX2 (ENSMAMG00000005517) #36 Eupercaria ANCESTRAL SPECIES 18 ENSGT00940000157883.a.b.f ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 Tetraodontidae ANCESTRAL SPECIES ENSGT00940000157883.a.b.f ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 Fugu MODERN SPECIES ENSTRUG00000017461 agps (ENSTRUG00000017479) #7 nfe2l2a (ENSTRUG00000017486) #8 ENSTRUG00000033446 hnrnpa3 (ENSTRUG00000017504) hoxd3a (ENSTRUG00000017520) #12 hoxd4a (ENSTRUG00000024818) #13 hoxd9a (ENSTRUG00000017521) hoxd10a (ENSTRUG00000025243) #15 hoxd11a (ENSTRUG00000017526) #16 hoxd12a (ENSTRUG00000017534) #17 evx2 (ENSTRUG00000017536) #18 lnpa (ENSTRUG00000017540) #19 ENSTRUG00000023868 ATF2 (ENSTRUG00000017553) #21 CHN1 (ENSTRUG00000017564) ##22 CHRNA1 (ENSTRUG00000017568) #23 GPR155 (ENSTRUG00000017582) #25 scrn3 (ENSTRUG00000019879) #26 CIR1 (ENSTRUG00000017600) #27 sp9 (ENSTRUG00000017609) #28 OLA1 (ENSTRUG00000017614) ##29 sp3a (ENSTRUG00000017623) #30 cdca7a (ENSTRUG00000017629) #31 ENSTRUG00000017637 ENSTRUG00000017670 NUP62 (ENSTRUG00000017712) ITGA6 (ENSTRUG00000017719) #35 dlx2b (ENSTRUG00000017732) #36 dlx1 (ENSTRUG00000017741) #37 hat1 (ENSTRUG00000017744) Tetraodon MODERN SPECIES 13 ENSTNIG00000016961 agps (ENSTNIG00000016960) #7 nfe2l2a (ENSTNIG00000016959) #8 hnrnpa3 (ENSTNIG00000016958) hoxd3a (ENSTNIG00000001764) #12 hoxd4a (ENSTNIG00000001765) #13 hoxd9a (ENSTNIG00000016957) hoxd10a (ENSTNIG00000001775) #15 hoxd11a (ENSTNIG00000001776) #16 hoxd12a (ENSTNIG00000001777) #17 evx2 (ENSTNIG00000001817) #18 lnpa (ENSTNIG00000016956) #19 ENSTNIG00000000679 ENSTNIG00000016955 ATF2 (ENSTNIG00000016954) #21 ENSTNIG00000016953 ##22 CHRNA1 (ENSTNIG00000016952) #23 GPR155 (ENSTNIG00000016951) #25 scrn3 (ENSTNIG00000016950) #26 sp9 (ENSTNIG00000016949) #28 OLA1 (ENSTNIG00000016948) ##29 sp3a (ENSTNIG00000016947) #30 cdca7a (ENSTNIG00000016946) #31 ENSTNIG00000016945 RAPGEF4 (ENSTNIG00000016944) #33 ENSTNIG00000016943 PDK1 (ENSTNIG00000016942) #34 NUP62 (ENSTNIG00000016941) ITGA6 (ENSTNIG00000016940) #35 dlx2b (ENSTNIG00000016939) #36 dlx1a (ENSTNIG00000016938) #37 Eupecaria_A ANCESTRAL SPECIES 18 ENSGT00940000157883.a.b.f ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 Ballan wrasse MODERN SPECIES 68 cycsb (ENSLBEG00000017009) ENSLBEG00000016933 agps (ENSLBEG00000016832) #7 nfe2l2a (ENSLBEG00000016797) #8 hnrnpa3 (ENSLBEG00000016767) hoxd3a (ENSLBEG00000016756) #12 hoxd4a (ENSLBEG00000016739) #13 hoxd9a (ENSLBEG00000016730) hoxd10a (ENSLBEG00000016718) #15 hoxd11a (ENSLBEG00000016704) #16 hoxd12a (ENSLBEG00000016682) #17 evx2 (ENSLBEG00000016664) #18 lnpa (ENSLBEG00000016632) #19 ENSLBEG00000016610 ATF2 (ENSLBEG00000016549) #21 CHN1 (ENSLBEG00000016496) ##22 CHRNA1 (ENSLBEG00000016355) #23 GPR155 (ENSLBEG00000016274) #25 scrn3 (ENSLBEG00000016240) #26 ENSLBEG00000016229 CIR1 (ENSLBEG00000016214) #27 sp9 (ENSLBEG00000016192) #28 OLA1 (ENSLBEG00000016137) ##29 sp3a (ENSLBEG00000016090) #30 cdca7a (ENSLBEG00000016051) #31 ENSLBEG00000015964 ENSLBEG00000015894 Eupecaria_B ANCESTRAL SPECIES 18 ENSGT00940000157883.a.b.f ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 Eupecaria_C ANCESTRAL SPECIES 21 ENSGT00940000157883.a.b.f ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 Eupercaria_incertae_sedis ANCESTRAL SPECIES 18 ENSGT00940000157883.a.b.f ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 European seabass MODERN SPECIES 5 ENSDLAG00005029869 ENSDLAG00005006250 agps (ENSDLAG00005004780) #7 nfe2l2a (ENSDLAG00005004683) #8 hnrnpa3 (ENSDLAG00005004602) hoxd3a (ENSDLAG00005004581) #12 hoxd4a (ENSDLAG00005031082) #13 hoxd9a (ENSDLAG00005034881) hoxd10a (ENSDLAG00005004554) #15 hoxd11a (ENSDLAG00005004534) #16 hoxd12a (ENSDLAG00005004530) #17 evx2 (ENSDLAG00005004514) #18 lnpa (ENSDLAG00005004438) #19 ENSDLAG00005029965 ATF2 (ENSDLAG00005026266) #21 ENSDLAG00005026265 ##22 CHRNA1 (ENSDLAG00005026264) #23 GPR155 (ENSDLAG00005026260) #25 scrn3 (ENSDLAG00005026258) #26 ENSDLAG00005028412 sp9 (ENSDLAG00005026255) #28 OLA1 (ENSDLAG00005026253) ##29 sp3a (ENSDLAG00005026252) #30 cdca7a (ENSDLAG00005026250) #31 ENSDLAG00005026246 RAPGEF4 (ENSDLAG00005026211) #33 ENSDLAG00005026192 ENSDLAG00005026179 PDK1 (ENSDLAG00005026186) #34 ITGA6 (ENSDLAG00005026150) #35 DLX2 (ENSDLAG00005031942) #36 Large yellow croaker MODERN SPECIES 490 cycsb (ENSLCRG00005020377) ENSLCRG00005020375 agps (ENSLCRG00005019201) #7 nfe2l2a (ENSLCRG00005019184) #8 hnrnpa3 (ENSLCRG00005019181) hoxd4a (ENSLCRG00005019180) #13 hoxd9a (ENSLCRG00005019178) hoxd10a (ENSLCRG00005019177) #15 hoxd11a (ENSLCRG00005019175) #16 evx2 (ENSLCRG00005019172) #18 hoxd3a (ENSLCRG00005019169) #12 hoxd12a (ENSLCRG00005019167) #17 lnpa (ENSLCRG00005019163) #19 ENSLCRG00005019153 ATF2 (ENSLCRG00005019149) #21 ENSLCRG00005019146 ##22 CHRNA1 (ENSLCRG00005018845) #23 GPR155 (ENSLCRG00005018468) #25 ENSLCRG00005018462 #26 scrn3 (ENSLCRG00005018461) #26 CIR1 (ENSLCRG00005018460) #27 sp9 (ENSLCRG00005018458) #28 OLA1 (ENSLCRG00005018455) ##29 sp3a (ENSLCRG00005018452) #30 cdca7a (ENSLCRG00005018450) #31 ENSLCRG00005018449 RAPGEF4 (ENSLCRG00005017753) #33 ENSLCRG00005017712 PDK1 (ENSLCRG00005017618) #34 ENSLCRG00005017615 ITGA6 (ENSLCRG00005017549) #35 Gilthead seabream MODERN SPECIES 23 CYCS (ENSSAUG00010024700) ENSSAUG00010024705 agps (ENSSAUG00010024711) #7 nfe2l2a (ENSSAUG00010024752) #8 hnrnpa3 (ENSSAUG00010024754) hoxd3a (ENSSAUG00010024756) #12 hoxd4a (ENSSAUG00010024757) #13 hoxd9a (ENSSAUG00010024758) hoxd10a (ENSSAUG00010024759) #15 hoxd11a (ENSSAUG00010024760) #16 hoxd12a (ENSSAUG00010024761) #17 evx2 (ENSSAUG00010024762) #18 lnpa (ENSSAUG00010024764) #19 ATP5G1 (ENSSAUG00010024766) ATF2 (ENSSAUG00010024770) #21 ENSSAUG00010024771 ##22 CHRNA1 (ENSSAUG00010024777) #23 GPR155 (ENSSAUG00010024911) #25 scrn3 (ENSSAUG00010025027) #26 CIR1 (ENSSAUG00010025030) #27 sp9 (ENSSAUG00010025031) #28 OLA1 (ENSSAUG00010025035) ##29 sp3a (ENSSAUG00010025109) #30 cdca7a (ENSSAUG00010025110) #31 ENSSAUG00010025111 RAPGEF4 (ENSSAUG00010025121) #33 ENSSAUG00010025335 PDK1 (ENSSAUG00010025367) #34 NUP62 (ENSSAUG00010025610) ITGA6 (ENSSAUG00010025621) #35 dlx2b (ENSSAUG00010026077) #36 Perciformes ANCESTRAL SPECIES 20 ENSGT00940000157883.a.b.f ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 Cottioidei ANCESTRAL SPECIES 14 ENSGT00940000157883.a.b.f ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 Stickleback MODERN SPECIES 16 OSBPL6 (ENSGACG00000004410) ENSGACG00000004421 agps (ENSGACG00000004444) #7 nfe2l2a (ENSGACG00000004470) #8 hnrnpa3 (ENSGACG00000004477) hoxd3a (ENSGACG00000004548) #12 hoxd4a (ENSGACG00000004551) #13 hoxd9a (ENSGACG00000004556) hoxd10a (ENSGACG00000004564) #15 hoxd11a (ENSGACG00000004569) #16 hoxd12a (ENSGACG00000004574) #17 evx2 (ENSGACG00000004579) #18 lnpa (ENSGACG00000004584) #19 ENSGACG00000004591 ATF2 (ENSGACG00000004600) #21 CHN1 (ENSGACG00000004616) ##22 CHRNA1 (ENSGACG00000004638) #23 GPR155 (ENSGACG00000004687) #25 scrn3 (ENSGACG00000004721) #26 CIR1 (ENSGACG00000004749) #27 sp9 (ENSGACG00000004757) #28 OLA1 (ENSGACG00000004760) ##29 sp3a (ENSGACG00000004770) #30 cdca7a (ENSGACG00000004774) #31 ENSGACG00000004790 RAPGEF4 (ENSGACG00000004808) #33 ENSGACG00000004831 PDK1 (ENSGACG00000004843) #34 NUP62 (ENSGACG00000004883) ITGA6 (ENSGACG00000004887) #35 dlx2b (ENSGACG00000004914) #36 Lumpfish MODERN SPECIES 13 ENSCLMG00005021004 ENSCLMG00005021005 agps (ENSCLMG00005021014) #7 nfe2l2a (ENSCLMG00005021034) #8 hnrnpa3 (ENSCLMG00005021035) hoxd3a (ENSCLMG00005021036) #12 hoxd4a (ENSCLMG00005021037) #13 hoxd9a (ENSCLMG00005021038) hoxd10a (ENSCLMG00005021039) #15 hoxd11a (ENSCLMG00005021040) #16 hoxd12a (ENSCLMG00005021041) #17 evx2 (ENSCLMG00005021042) #18 lnpa (ENSCLMG00005021044) #19 ENSCLMG00005021047 ATF2 (ENSCLMG00005021049) #21 ENSCLMG00005021050 ##22 CHRNA1 (ENSCLMG00005021051) #23 GPR155 (ENSCLMG00005021053) #25 scrn3 (ENSCLMG00005021066) #26 CIR1 (ENSCLMG00005021067) #27 sp9 (ENSCLMG00005021068) #28 OLA1 (ENSCLMG00005021069) ##29 sp3a (ENSCLMG00005021071) #30 ENSCLMG00005021072 cdca7a (ENSCLMG00005021073) #31 ENSCLMG00005021075 RAPGEF4 (ENSCLMG00005021079) #33 ENSCLMG00005021084 PDK1 (ENSCLMG00005021092) #34 NUP62 (ENSCLMG00005021120) ENSCLMG00005021121 Perciformes_a ANCESTRAL SPECIES 21 ENSGT00940000157883.a.b.f ENSGT00940000164264 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b #8 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266 #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161025 #18 ENSGT00390000001859.e #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000161737 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127 #36 Pike perch MODERN SPECIES 1 cycsb (ENSSLUG00000010048) ENSSLUG00000010056 agps (ENSSLUG00000010199) #7 nfe2l2a (ENSSLUG00000013061) #8 HNRNPA1L3 (ENSSLUG00000013067) hoxd3a (ENSSLUG00000013082) #12 hoxd4a (ENSSLUG00000013085) #13 hoxd9a (ENSSLUG00000013092) hoxd10a (ENSSLUG00000013095) #15 hoxd11a (ENSSLUG00000013098) #16 hoxd12a (ENSSLUG00000013103) #17 evx2 (ENSSLUG00000013108) #18 lnpa (ENSSLUG00000013118) #19 atp5mc3a (ENSSLUG00000013135) ##20 ATF2 (ENSSLUG00000013155) #21 CHN1 (ENSSLUG00000013159) ##22 CHRNA1 (ENSSLUG00000013170) #23 GPR155 (ENSSLUG00000013387) #25 scrn3 (ENSSLUG00000013574) #26 CIR1 (ENSSLUG00000013579) #27 sp9 (ENSSLUG00000013583) #28 OLA1 (ENSSLUG00000013584) ##29 sp3a (ENSSLUG00000013590) #30 cdca7a (ENSSLUG00000013595) #31 ENSSLUG00000013605 RAPGEF4 (ENSSLUG00000013742) #33 ENSSLUG00000016042 PDK1 (ENSSLUG00000016173) #34 NUP62 (ENSSLUG00000016539) ITGA6 (ENSSLUG00000016595) #35 dlx2b (ENSSLUG00000016972) #36 Channel bull blenny MODERN SPECIES 13 cycsb (ENSCGOG00000010607) ENSCGOG00000010619 agps (ENSCGOG00000010712) #7 nfe2l2a (ENSCGOG00000012505) #8 hnrnpa3 (ENSCGOG00000012510) hoxd3a (ENSCGOG00000012512) #12 hoxd4a (ENSCGOG00000012513) #13 hoxd9a (ENSCGOG00000012514) hoxd10a (ENSCGOG00000012515) #15 hoxd11a (ENSCGOG00000012516) #16 hoxd12a (ENSCGOG00000012519) #17 evx2 (ENSCGOG00000012521) #18 lnpa (ENSCGOG00000012525) #19 ENSCGOG00000012529 ATF2 (ENSCGOG00000012558) #21 CHN1 (ENSCGOG00000012562) ##22 CHRNA1 (ENSCGOG00000012576) #23 GPR155 (ENSCGOG00000012639) #25 scrn3 (ENSCGOG00000012751) #26 CIR1 (ENSCGOG00000012769) #27 sp9 (ENSCGOG00000012811) #28 OLA1 (ENSCGOG00000012817) ##29 sp3a (ENSCGOG00000012843) #30 cdca7a (ENSCGOG00000012852) #31 ENSCGOG00000012861 RAPGEF4 (ENSCGOG00000013211) #33 ENSCGOG00000013637 PDK1 (ENSCGOG00000013729) #34 NUP62 (ENSCGOG00000015449) ITGA6 (ENSCGOG00000015454) #35 dlx2b (ENSCGOG00000015533) #36 Pinecone sodierfish MODERN SPECIES 13 cycsb (ENSMMDG00005021133) ENSMMDG00005021126 agps (ENSMMDG00005018127) #7 nfe2l2a (ENSMMDG00005018097) #8 hnrnpa3 (ENSMMDG00005018093) hoxd3a (ENSMMDG00005018092) #12 hoxd4a (ENSMMDG00005018091) #13 hoxd9a (ENSMMDG00005018089) hoxd10a (ENSMMDG00005018088) #15 hoxd11a (ENSMMDG00005018087) #16 hoxd12a (ENSMMDG00005018086) #17 evx2 (ENSMMDG00005018084) #18 lnpa (ENSMMDG00005018082) #19 ENSMMDG00005018076 ATF2 (ENSMMDG00005018070) #21 ENSMMDG00005018052 ##22 CHRNA1 (ENSMMDG00005018050) #23 GPR155 (ENSMMDG00005018047) #25 scrn3 (ENSMMDG00005018044) #26 CIR1 (ENSMMDG00005018042) #27 sp9 (ENSMMDG00005018039) #28 OLA1 (ENSMMDG00005017812) ##29 sp3a (ENSMMDG00005017809) #30 cdca7a (ENSMMDG00005017808) #31 ENSMMDG00005017779 RAPGEF4 (ENSMMDG00005017775) #33 ENSMMDG00005017773 PDK1 (ENSMMDG00005017644) #34 ENSMMDG00005017639 ITGA6 (ENSMMDG00005017274) #35 dlx2b (ENSMMDG00005017250) #36 Cod MODERN SPECIES 12 ENSGMOG00000004113 agps (ENSGMOG00000004161) #7 ENSGMOG00000030426 nfe2l2a (ENSGMOG00000004196) #8 HNRNPA3 (ENSGMOG00000004230) #9 hoxd3a (ENSGMOG00000037192) #12 hoxd4a (ENSGMOG00000023531) #13 hoxd9a (ENSGMOG00000024253) hoxd10a (ENSGMOG00000028708) #15 hoxd11a (ENSGMOG00000004301) #16 hoxd12a (ENSGMOG00000024373) #17 evx2 (ENSGMOG00000036423) #18 lnpa (ENSGMOG00000004346) #19 atp5mc3a (ENSGMOG00000004380) ##20 ATF2 (ENSGMOG00000004396) #21 CHN1 (ENSGMOG00000036951) ##22 CHRNA1 (ENSGMOG00000004453) #23 GPR155 (ENSGMOG00000004473) #25 scrn3 (ENSGMOG00000004519) #26 CIR1 (ENSGMOG00000004548) #27 sp9 (ENSGMOG00000004590) #28 ENSGMOG00000027673 ##33 ENSGMOG00000002065 PDK1 (ENSGMOG00000002103) #34 ENSGMOG00000031661 ITGA6 (ENSGMOG00000002164) #35 DLX2 (ENSGMOG00000037166) #36 dlx1a (ENSGMOG00000002250) #37 hat1 (ENSGMOG00000002262) ENSGMOG00000029758 ENSGMOG00000023386 Protacanthopterygii DUPLICATION Protacanthopterygii DUPLICATION Protacanthopterygii ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.b.e.a ##22 Salmoninae DUPLICATION Salmoninae ANCESTRAL SPECIES 449 ENSGT00390000015818.g.a ENSGT00680000100059.i ENSGT00940000157883.a.b.f.vb.b ENSGT00950000182892.a.a.b.d #8 ENSGT00950000182919.C #10 ENSGT00390000001859.f #19 ENSGT00940000157981.a.a.a.a ENSGT01030000234635.a.b.a.b.b.b.e.a.a ##22 ENSGT00940000160909.f.b ENSGT00390000016619.a.i ENSGT00940000156472.c ENSGT00940000160192.a ENSGT00940000160478.f.a ENSGT00940000158443.n ENSGT00940000155611.k ENSGT00940000155850.vb.a ENSGT00940000156564.b.c.b ENSGT00390000006347.b ENSGT00940000161024.b ENSGT00940000161407.b.c ENSGT00860000133881.l ENSGT00940000155696.ub.e ENSGT01100000263563.c.a.b.f Salmoninae_a ANCESTRAL SPECIES 66 ENSGT00390000015818.g.a ENSGT00680000100059.i ENSGT00940000157883.a.b.f.vb.b ENSGT00950000182892.a.a.b.d #8 ENSGT00950000182919.C #10 ENSGT00390000001859.f #19 ENSGT00940000157981.a.a.a.a ENSGT01030000234635.a.b.a.b.b.b.e.a.a ##22 ENSGT00940000160909.f.b ENSGT00390000016619.a.i ENSGT00940000156472.c ENSGT00940000160192.a ENSGT00940000160478.f.a ENSGT00940000158443.n ENSGT00940000155611.k ENSGT00940000155850.wb ENSGT00940000156564.b.c.b ENSGT00390000006347.b.a ENSGT00940000161024.b ENSGT00940000161407.b.c ENSGT00860000133881.l ENSGT00940000155696.ub.e ENSGT01100000263563.c.a.b.f Salmo ANCESTRAL SPECIES 41 ENSGT00390000015818.g.a ENSGT00680000100059.i ENSGT00940000157883.a.b.f.vb.b ENSGT00950000182892.a.a.b.d #8 ENSGT00950000182919.C #10 ENSGT00390000001859.f #19 ENSGT00940000157981.a.a.a.a ENSGT01030000234635.a.b.a.b.b.b.e.a.a ##22 ENSGT00940000160909.f.b ENSGT00390000016619.a.i ENSGT00940000156472.c ENSGT00940000160192.a ENSGT00940000160478.f.a ENSGT00940000158443.n ENSGT00940000155611.k ENSGT00940000155850.wb ENSGT00940000156564.b.c.b ENSGT00390000006347.b.a ENSGT00940000161024.b ENSGT00940000161407.b.c ENSGT00860000133881.k.b ENSGT00940000155696.ub.e ENSGT01100000263563.c.a.b.f River trout MODERN SPECIES 32 zc3h15 (ENSSTUG00000042106) rbm45 (ENSSTUG00000042057) cycsb (ENSSTUG00000042031) nfe2l2a (ENSSTUG00000042007) #8 mtx2 (ENSSTUG00000041772) #10 ENSSTUG00000041751 lnpk (ENSSTUG00000041618) #19 atp5mc3b (ENSSTUG00000041583) ENSSTUG00000041302 ##22 ENSSTUG00000041279 nckap1 (ENSSTUG00000039584) dusp19b (ENSSTUG00000039510) ppp1r1c (ENSSTUG00000039496) neurod1 (ENSSTUG00000039485) ENSSTUG00000039453 znf385b (ENSSTUG00000039440) plekha3 (ENSSTUG00000049416) ankrd10a (ENSSTUG00000049413) CARS2 (ENSSTUG00000049001) rab20 (ENSSTUG00000048977) irs2a (ENSSTUG00000048974) lig4 (ENSSTUG00000048970) NALF1 (ENSSTUG00000048968) cckbra (ENSSTUG00000048965) Atlantic salmon MODERN SPECIES 8 ENSSSAG00000083616 sema3e (ENSSSAG00000093380) sema3ab (ENSSSAG00000088799) zc3hf (ENSSSAG00000056593) ENSSSAG00000096560 ENSSSAG00000104947 ENSSSAG00000099826 ENSSSAG00000094195 ENSSSAG00000113645 cycsb (ENSSSAG00000007248) ENSSSAG00000007251 #8 mtx2 (ENSSSAG00000007259) #10 lnpk (ENSSSAG00000007280) #19 AT5G3 (ENSSSAG00000007320) ENSSSAG00000055202 ##22 ENSSSAG00000007345 ##22 ENSSSAG00000007417 ENSSSAG00000007488 ENSSSAG00000108732 ENSSSAG00000107573 ENSSSAG00000101890 ENSSSAG00000025750 ENSSSAG00000026988 ENSSSAG00000027337 ankrd10a (ENSSSAG00000111913) ENSSSAG00000028027 irs2a (ENSSSAG00000038669) lig4 (ENSSSAG00000038712) fam155a (ENSSSAG00000038793) ENSSSAG00000085820 cckbra (ENSSSAG00000113503) Oncorhynchus ANCESTRAL SPECIES 43 ENSGT01100000263495.A.a.b.b.a.a.b.b.b.b.b.b.b.b.b.a.b ENSGT00390000015818.g.a ENSGT00680000100059.i ENSGT00940000157883.a.b.f.vb.b ENSGT00950000182892.a.a.b.d #8 ENSGT00950000182919.C #10 ENSGT00390000001859.f.c.a #19 ENSGT00940000154298.b.a.b ##20 ENSGT00390000001859.f.d #19 ENSGT00940000157981.a.a.a.a ENSGT01030000234635.a.b.a.b.b.b.e.a.a ##22 ENSGT00940000160909.f.b ENSGT00390000016619.a.i ENSGT00940000156472.c ENSGT00940000160192.a ENSGT00940000160478.f.a ENSGT00940000158443.n ENSGT00940000155611.k ENSGT00940000155850.wb.a ENSGT00940000156564.b.c.b ENSGT00390000006347.b.a ENSGT00940000161024.b ENSGT00940000161407.b.c ENSGT00860000133881.l ENSGT00940000155696.ub.e ENSGT01100000263563.c.a.b.f Rainbow trout MODERN SPECIES 28 ENSOMYG00000017602 ENSOMYG00000023150 ENSOMYG00000068547 ENSOMYG00000057021 ENSOMYG00000062338 ENSOMYG00000074321 ENSOMYG00000052912 ENSOMYG00000017583 ENSOMYG00000017556 ENSOMYG00000017526 ENSOMYG00000017516 #8 ENSOMYG00000017484 #10 ENSOMYG00000017443 #19 ENSOMYG00000017436 ENSOMYG00000017385 ##20 ENSOMYG00000017138 ##22 ENSOMYG00000017100 ENSOMYG00000016482 ENSOMYG00000016430 ENSOMYG00000016213 ENSOMYG00000056074 NEUROD1 (ENSOMYG00000016205) ENSOMYG00000015500 ENSOMYG00000015413 ENSOMYG00000015395 ENSOMYG00000015389 ENSOMYG00000010000 CARS2 (ENSOMYG00000014207) ENSOMYG00000076140 irs2a (ENSOMYG00000014046) lig4 (ENSOMYG00000014039) Oncorhynchus_a ANCESTRAL SPECIES 77 ENSGT00940000162179.e.a.a.i.b.b.b.a.b.a.a.b.a.a.b.a.a ENSGT00940000153582.a.m.a.a.b.b.b.a.a.b.a.b.b ENSGT00940000153582.a.m.a.a.b.b.b.b.b.a.b.a.a.a.a.b.b.a.b.b.b ENSGT00390000015818.g.a ENSGT00680000100059.i ENSGT00940000157883.a.b.f.vb.b ENSGT00950000182892.a.a.b.d #8 ENSGT00950000182919.C #10 ENSGT00390000001859.f.c.a #19 ENSGT00940000154298.b.a.b ##20 ENSGT00390000001859.f.d #19 ENSGT00940000157981.a.a.a.a ENSGT01030000234635.a.b.a.b.b.b.e.a.a ##22 ENSGT00940000160909.f.b ENSGT00390000016619.a.i ENSGT00940000156472.c ENSGT00940000160192.a ENSGT00940000160478.f.a ENSGT00940000158443.n ENSGT00940000155611.k ENSGT00940000155850.wb.a ENSGT00940000156564.b.c.b ENSGT00390000006347.b.a ENSGT00940000161024.b ENSGT00940000161407.b.c ENSGT00860000133881.l ENSGT00940000155696.ub.e ENSGT01100000263563.c.a.b.f Coho salmon MODERN SPECIES 25 ENSOKIG00005020290 ENSOKIG00005029795 ENSOKIG00005029784 ENSOKIG00005029775 ENSOKIG00005029769 ENSOKIG00005029756 ENSOKIG00005029746 ENSOKIG00005029719 ZC3H15 (ENSOKIG00005029703) RBM45 (ENSOKIG00005029645) cycsb (ENSOKIG00005029620) ENSOKIG00005029608 #8 mtx2 (ENSOKIG00005029590) #10 lnpk (ENSOKIG00005029543) #19 atp5mc3b (ENSOKIG00005029486) ENSOKIG00005029320 ##22 ENSOKIG00005029248 ENSOKIG00005029233 NCKAP1 (ENSOKIG00005026774) dusp19b (ENSOKIG00005026615) ppp1r1c (ENSOKIG00005026609) neurod1 (ENSOKIG00005026601) ENSOKIG00005026481 ZNF385B (ENSOKIG00005026416) plekha3 (ENSOKIG00005026400) ANKRD10 (ENSOKIG00005026393) CARS2 (ENSOKIG00005025734) RAB20 (ENSOKIG00005025663) irs2a (ENSOKIG00005025648) NALF1 (ENSOKIG00005025634) cckbra (ENSOKIG00005025624) Chinook salmon DUPLICATION Chinook salmon DUPLICATION Chinook salmon DUPLICATION Chinook salmon DUPLICATION Chinook salmon MODERN SPECIES 36 NELL1 (ENSOTSG00005046864) ENSOTSG00005046866 ENSOTSG00005046867 ENSOTSG00005046868 ENSOTSG00005046869 ENSOTSG00005046870 ENSOTSG00005046871 ENSOTSG00005018884 ENSOTSG00005018885 zc3h15 (ENSOTSG00005018886) rbm45 (ENSOTSG00005018888) nfe2l2a (ENSOTSG00005018904) #8 mtx2 (ENSOTSG00005018905) #10 ENSOTSG00005018907 #19 atp5mc3b (ENSOTSG00005018908) ENSOTSG00005018918 ##22 ENSOTSG00005019022 nckap1 (ENSOTSG00005019062) dusp19b (ENSOTSG00005019963) ppp1r1c (ENSOTSG00005019964) neurod1 (ENSOTSG00005019965) ENSOTSG00005019966 znf385b (ENSOTSG00005019969) plekha3 (ENSOTSG00005019971) ankrd10a (ENSOTSG00005019974) CARS2 (ENSOTSG00005019981) rab20 (ENSOTSG00005022367) irs2a (ENSOTSG00005022375) lig4 (ENSOTSG00005022376) NALF1 (ENSOTSG00005022377) cckbra (ENSOTSG00005022378) Chinook salmon MODERN SPECIES 12 ankra2 (ENSOTSG00005036911) ARHGEF28 (ENSOTSG00005036917) ENSOTSG00005036918 ENSOTSG00005036921 ENSOTSG00005036925 ENSOTSG00005036926 ENSOTSG00005036927 ENSOTSG00005036928 ENSOTSG00005036929 zc3h15 (ENSOTSG00005036930) rbm45 (ENSOTSG00005036931) nfe2l2a (ENSOTSG00005036933) #8 mtx2 (ENSOTSG00005036938) #10 ENSOTSG00005036943 #19 atp5mc3b (ENSOTSG00005036946) ENSOTSG00005036982 ##22 ENSOTSG00005037008 nckap1 (ENSOTSG00005037021) dusp19b (ENSOTSG00005037417) ppp1r1c (ENSOTSG00005037418) neurod1 (ENSOTSG00005037420) ENSOTSG00005037421 znf385b (ENSOTSG00005037424) plekha3 (ENSOTSG00005037426) ankrd10a (ENSOTSG00005037430) CARS2 (ENSOTSG00005037450) rab20 (ENSOTSG00005040160) irs2a (ENSOTSG00005040162) lig4 (ENSOTSG00005040164) NALF1 (ENSOTSG00005040165) cckbra (ENSOTSG00005040166) Chinook salmon MODERN SPECIES 31 ENSOTSG00005031001 ENSOTSG00005031000 ENSOTSG00005030999 ENSOTSG00005030998 ENSOTSG00005030997 ENSOTSG00005030996 ENSOTSG00005030995 ENSOTSG00005030992 ENSOTSG00005030982 zc3h15 (ENSOTSG00005030980) rbm45 (ENSOTSG00005030964) nfe2l2a (ENSOTSG00005030963) #8 mtx2 (ENSOTSG00005030960) #10 ENSOTSG00005030957 #19 ENSOTSG00005030936 ##20 ENSOTSG00005030931 ##22 ENSOTSG00005030929 nckap1 (ENSOTSG00005030733) dusp19b (ENSOTSG00005030708) ppp1r1c (ENSOTSG00005030707) neurod1 (ENSOTSG00005030706) ENSOTSG00005030702 znf385b (ENSOTSG00005030701) plekha3 (ENSOTSG00005030700) ankrd10a (ENSOTSG00005030699) CARS2 (ENSOTSG00005030503) rab20 (ENSOTSG00005030492) irs2a (ENSOTSG00005030491) lig4 (ENSOTSG00005030490) NALF1 (ENSOTSG00005030489) cckbra (ENSOTSG00005030422) Chinook salmon MODERN SPECIES 31 ENSOTSG00005030418 ENSOTSG00005030416 ENSOTSG00005030414 ENSOTSG00005030413 ENSOTSG00005030411 ENSOTSG00005030410 ENSOTSG00005030409 ENSOTSG00005030407 ENSOTSG00005030400 zc3h15 (ENSOTSG00005030399) rbm45 (ENSOTSG00005030397) nfe2l2a (ENSOTSG00005030391) #8 mtx2 (ENSOTSG00005030387) #10 ENSOTSG00005030385 #19 ENSOTSG00005030357 ##20 ENSOTSG00005030355 ##22 nckap1 (ENSOTSG00005029523) dusp19b (ENSOTSG00005029436) ppp1r1c (ENSOTSG00005029396) neurod1 (ENSOTSG00005029395) ENSOTSG00005029393 znf385b (ENSOTSG00005029392) plekha3 (ENSOTSG00005029391) ankrd10a (ENSOTSG00005029390) CARS2 (ENSOTSG00005046070) rab20 (ENSOTSG00005046069) irs2a (ENSOTSG00005046068) lig4 (ENSOTSG00005046067) NALF1 (ENSOTSG00005046066) cckbra (ENSOTSG00005046050) ENSOTSG00005046049 Chinook salmon MODERN SPECIES 36 ENSOTSG00005022576 ENSOTSG00005022575 ENSOTSG00005022572 ENSOTSG00005022570 ENSOTSG00005022569 ENSOTSG00005022568 ENSOTSG00005022567 ENSOTSG00005022565 ENSOTSG00005022564 zc3h15 (ENSOTSG00005022563) rbm45 (ENSOTSG00005022562) nfe2l2a (ENSOTSG00005022553) #8 mtx2 (ENSOTSG00005022552) #10 ENSOTSG00005022551 #19 ENSOTSG00005022546 ##20 ENSOTSG00005022469 ##22 ENSOTSG00005022466 nckap1 (ENSOTSG00005020380) dusp19b (ENSOTSG00005020328) ppp1r1c (ENSOTSG00005020325) neurod1 (ENSOTSG00005020322) ENSOTSG00005020316 znf385b (ENSOTSG00005020315) plekha3 (ENSOTSG00005020284) ankrd10a (ENSOTSG00005020281) CARS2 (ENSOTSG00005020049) rab20 (ENSOTSG00005020008) irs2a (ENSOTSG00005019989) lig4 (ENSOTSG00005021962) NALF1 (ENSOTSG00005021961) cckbra (ENSOTSG00005021960) Huchen MODERN SPECIES 707 nfe2l2a (ENSHHUG00000051940) #8 mtx2 (ENSHHUG00000051932) #10 lnpk (ENSHHUG00000051902) #19 atp5mc3b (ENSHHUG00000051887) ENSHHUG00000051881 ##22 ENSHHUG00000051878 nckap1 (ENSHHUG00000051808) dusp19b (ENSHHUG00000051805) zc3h15 (ENSHHUG00000051802) Salmoninae ANCESTRAL SPECIES 1918 ENSGT00940000157981.a.a.a.b ENSGT01030000234635.a.b.a.b.b.b.e.a.b ##22 Salmoninae_a ANCESTRAL SPECIES 69 ENSGT00390000015818.g.b ENSGT00940000161025.n #18 ENSGT00940000173501 ENSGT00940000154298.b.a.b ##20 ENSGT01030000234635.a.b.a.b.b.b.e.a.b ##22 ENSGT00940000154101.b.d.b ENSGT00440000037780.a.w ENSGT00940000156232.b.e.b ENSGT00940000156625.f ENSGT00940000156227.f.h ENSGT00940000164184.c.a ENSGT01090000259987.a.b.d.b.b.b ENSGT00940000157169.c.b ENSGT00940000154926.c ENSGT00940000158085.b.a.g ENSGT00940000158806.p ENSGT00940000158582.m ENSGT00940000166891.a.e ENSGT00940000154653.fb.b.b ENSGT00950000183208.B.f.a.a Salmo ANCESTRAL SPECIES 34 ENSGT00390000015818.g.b ENSGT00940000161025.n #18 ENSGT00940000173501 ENSGT00940000154298.b.a.b ##20 ENSGT01030000234635.a.b.a.b.b.b.e.a.b ##22 ENSGT00940000154101.b.d.b ENSGT00440000037780.a.w ENSGT00940000156232.b.e.b ENSGT00940000156625.f ENSGT00940000156227.f.h ENSGT00940000164184.c.a ENSGT01090000259987.a.b.d.b.b.b ENSGT00940000157169.c.b ENSGT00940000154926.c ENSGT00940000158085.b.a.g ENSGT00940000158806.p ENSGT00940000182537.c ENSGT00940000166891.a.e ENSGT00940000154653.fb.b.b ENSGT00950000183208.B.f.a.a Atlantic salmon MODERN SPECIES 21 ENSSSAG00000008838 ENSSSAG00000085486 ENSSSAG00000055586 #18 ENSSSAG00000086439 AT5G3 (ENSSSAG00000055558) ##20 ENSSSAG00000116644 ##22 BAMBI (ENSSSAG00000109871) waca (ENSSSAG00000055114) ENSSSAG00000096292 mpp7a (ENSSSAG00000080707) ODAD2 (ENSSSAG00000118770) mkxa (ENSSSAG00000050783) rab18a (ENSSSAG00000094107) itgb1a (ENSSSAG00000039442) nrp1a (ENSSSAG00000015164) CUL2 (ENSSSAG00000012342) ENSSSAG00000012040 m3k8 (ENSSSAG00000011939) ENSSSAG00000085460 ENSSSAG00000008891 ENSSSAG00000009399 River trout MODERN SPECIES 36 gart (ENSSTUG00000005597) NCAM2 (ENSSTUG00000004313) ENSSTUG00000003998 NALF1 (ENSSTUG00000003936) irs2a (ENSSTUG00000003833) rab20 (ENSSTUG00000003818) ENSSTUG00000003801 ENSSTUG00000003762 ENSSTUG00000003733 plekha3 (ENSSTUG00000003699) neurod1 (ENSSTUG00000003679) zc3h15 (ENSSTUG00000003639) ENSSTUG00000003571 #18 ENSSTUG00000025750 atp5mc3b (ENSSTUG00000025722) ENSSTUG00000025567 ##22 BAMBI (ENSSTUG00000025519) waca (ENSSTUG00000024929) mpp7a (ENSSTUG00000023155) ODAD2 (ENSSTUG00000022963) mkxa (ENSSTUG00000022929) rab18a (ENSSTUG00000022866) itgb1a (ENSSTUG00000020085) nrp1a (ENSSTUG00000016876) CUL2 (ENSSTUG00000016548) klf6a (ENSSTUG00000016520) MAP3K8 (ENSSTUG00000016509) ENSSTUG00000016503 ENSSTUG00000016499 ENSSTUG00000013252 zeb1b (ENSSTUG00000012968) Oncorhynchus ANCESTRAL SPECIES 27 ENSGT00390000015818.g.b ENSGT00940000157981.a.a.a.b ENSGT01030000234635.a.b.a.b.b.b.e.a.b ##22 ENSGT00940000154101.b.d.b ENSGT00440000037780.a.w ENSGT00940000156232.b.e.b ENSGT00940000156625.f ENSGT00940000156227.f.h ENSGT00940000164184.c.a ENSGT01090000259987.a.b.d.b.b.b ENSGT00940000157169.c.b ENSGT00940000154926.c ENSGT00940000158806.p ENSGT00940000158582.m ENSGT00940000166891.a.e ENSGT00940000154653.fb.b.b ENSGT00950000183208.B.f.a.a ENSGT00390000014526.a Rainbow trout MODERN SPECIES 6 ENSOMYG00000048927 ENSOMYG00000048502 ENSOMYG00000045483 cldn15lb (ENSOMYG00000045479) ENSOMYG00000045473 ENSOMYG00000053478 ENSOMYG00000044110 ENSOMYG00000043835 ENSOMYG00000063213 ENSOMYG00000043819 ENSOMYG00000023852 ENSOMYG00000074878 ENSOMYG00000064338 ENSOMYG00000043804 ENSOMYG00000043795 ENSOMYG00000043713 ##22 ENSOMYG00000043670 ENSOMYG00000058291 BAMBI (ENSOMYG00000043656) waca (ENSOMYG00000043597) mpp7a (ENSOMYG00000043561) ODAD2 (ENSOMYG00000065877) mkxa (ENSOMYG00000043537) rab18a (ENSOMYG00000043516) itgb1a (ENSOMYG00000040711) nrp1a (ENSOMYG00000039540) ENSOMYG00000057173 ENSOMYG00000071814 CUL2 (ENSOMYG00000039019) MAP3K8 (ENSOMYG00000038819) ENSOMYG00000054712 Oncorhynchus_a ANCESTRAL SPECIES 27 ENSGT00390000015818.g.b ENSGT00940000157981.a.a.a.b ENSGT01030000234635.a.b.a.b.b.b.e.a.b ##22 ENSGT00940000154101.b.d.b ENSGT00440000037780.a.w ENSGT00940000156232.b.e.b ENSGT00940000156625.f ENSGT00940000156227.f.h ENSGT00940000164184.c.a ENSGT01090000259987.a.b.d.b.b.b ENSGT00940000157169.c.b ENSGT00940000154926.c ENSGT00940000158806.p ENSGT00940000158582.m ENSGT00940000166891.a.e ENSGT00940000154653.fb.b.b ENSGT00950000183208.B.f.a.a ENSGT00390000014526.a Coho salmon MODERN SPECIES 2 CDH18 (ENSOKIG00005045744) EPC1 (ENSOKIG00005045007) ENSOKIG00005044949 KIF5B (ENSOKIG00005044683) ENSOKIG00005044643 ARHGAP12 (ENSOKIG00005044073) znf438 (ENSOKIG00005043989) ZEB1 (ENSOKIG00005043958) ENSOKIG00005042887 ENSOKIG00005042712 ENSOKIG00005042699 ENSOKIG00005042609 MAP3K8 (ENSOKIG00005042568) zc3h15 (ENSOKIG00005042546) ATP5MC3 (ENSOKIG00005042507) ##20 ENSOKIG00005042299 ##22 ENSOKIG00005042238 BAMBI (ENSOKIG00005042201) waca (ENSOKIG00005042001) mpp7a (ENSOKIG00005040769) ODAD2 (ENSOKIG00005040553) mkxa (ENSOKIG00005040523) rab18a (ENSOKIG00005040468) itgb1a (ENSOKIG00005035587) nrp1a (ENSOKIG00005032201) CUL2 (ENSOKIG00005031779) ENSOKIG00005031750 ENSOKIG00005031733 KLF6 (ENSOKIG00005031715) vcla (ENSOKIG00005031605) ap3m1 (ENSOKIG00005031551) Chinook salmon MODERN SPECIES 21 ENSOTSG00005041961 CUL2 (ENSOTSG00005041916) zc3h15 (ENSOTSG00005041911) atp5mc3b (ENSOTSG00005041910) ENSOTSG00005041799 ##22 BAMBI (ENSOTSG00005041792) waca (ENSOTSG00005041777) mpp7a (ENSOTSG00005040724) ENSOTSG00005040723 mkxa (ENSOTSG00005040722) rab18a (ENSOTSG00005040696) itgb1a (ENSOTSG00005035895) nrp1a (ENSOTSG00005035226) MAP3K8 (ENSOTSG00005035222) ENSOTSG00005035218 ENSOTSG00005025983 zeb1b (ENSOTSG00005025939) znf438 (ENSOTSG00005025936) ARHGAP12 (ENSOTSG00005019848) KIF5B (ENSOTSG00005019345) Huchen MODERN SPECIES 1771 atp5mc3b (ENSHHUG00000051574) ENSHHUG00000051558 ##22 ENSHHUG00000051549 ENSHHUG00000051547 ENSHHUG00000051540 Northern pike MODERN SPECIES 21 irs2a (ENSELUG00000006821) ENSELUG00000006838 ube2a (ENSELUG00000006879) plekha3 (ENSELUG00000006911) znf385b (ENSELUG00000006932) ENSELUG00000020387 ENSELUG00000007006 neurod1 (ENSELUG00000026028) ppp1r1c (ENSELUG00000004286) PDE1A (ENSELUG00000004269) ENSELUG00000031879 dusp19b (ENSELUG00000004223) nckap1 (ENSELUG00000024037) ENSELUG00000001751 ENSELUG00000021589 #19 ENSELUG00000021531 ##22 ENSELUG00000028600 mtx2 (ENSELUG00000021475) #10 ENSELUG00000031174 nfe2l2a (ENSELUG00000023412) #8 cyc (ENSELUG00000031437) rbm45 (ENSELUG00000020878) zc3h15 (ENSELUG00000000912) ENSELUG00000030988 APP (ENSELUG00000001674) cyyr1 (ENSELUG00000027401) ADAMTS1 (ENSELUG00000001676) ADAMTS5 (ENSELUG00000001677) ENSELUG00000033526 gart (ENSELUG00000001749) n6amt1 (ENSELUG00000001748) Protacanthopterygii ANCESTRAL SPECIES 18 ENSGT00940000156112 #7 ENSGT00950000182892.a.a.b.c #8 ENSGT00940000154808.a.a ENSGT00940000160027 #12 ENSGT00940000157270 #13 ENSGT00940000161503.a ENSGT00940000158266.h #15 ENSGT00940000161308 #16 ENSGT00940000159938 #17 ENSGT00940000161457 ENSGT00940000161025 #18 ENSGT00390000001859.e.c #19 ENSGT00940000157981.a.a.b ENSGT00940000156582 #21 ENSGT01000000221798 ENSGT01030000234635.a.b.a.b.b.b.e.b ##22 ENSGT00940000156851.c #23 ENSGT00390000004153.c #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 #28 ENSGT00390000000673.a.a.a ##29 ENSGT00390000000673.a.a.b ##29 ENSGT00940000155099.k.a #30 ENSGT00940000155436 #31 ENSGT00940000163262.a ENSGT00940000156075.a.a #33 ENSGT00940000164127.a ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353.a.a.a #35 ENSGT00940000160127.j #36 Salmoninae DUPLICATION Salmoninae ANCESTRAL SPECIES 7 ENSGT00950000182892.a.a.b.c.b #8 ENSGT00940000154808.a.a.o.b ENSGT00940000160027.c #12 ENSGT00940000157270.s #13 ENSGT00940000161503.a ENSGT00940000158266.h.a #15 ENSGT00940000161308.c #16 ENSGT00940000159938.a #17 ENSGT00940000161457 ENSGT00940000161025.m.a #18 ENSGT00390000001859.e.c #19 ENSGT00940000157981.a.a.b ENSGT00940000156582.m #21 ENSGT00940000161826.C.bb ENSGT01000000221798 ENSGT01030000234635.a.b.a.b.b.b.e.b.a ##22 ENSGT00940000156851.c.c #23 ENSGT00390000004153.c.f #25 ENSGT00390000013474.a.n #26 ENSGT00940000162304.f #28 ENSGT00390000000673.a.a.a.a ##29 ENSGT00390000000673.a.a.b ##29 ENSGT00940000155099.k.a.e #30 ENSGT00940000155436.w #31 ENSGT00940000161352.f.a #32 ENSGT00940000156075.a.a.h #33 ENSGT00940000164127.a.h ENSGT01030000234646.B.a.a.b.c #34 ENSGT00940000155353.a.a.a.g #35 ENSGT00940000160127.j.a #36 ENSGT00940000160029.d #37 Huchen MODERN SPECIES 7 hnrnpa3 (ENSHHUG00000033596) ENSHHUG00000033593 hoxd4a (ENSHHUG00000033580) #13 hoxd3a (ENSHHUG00000033566) #12 hoxd9a (ENSHHUG00000033557) hoxd10a (ENSHHUG00000033547) #15 hoxd11a (ENSHHUG00000033535) #16 hoxd12a (ENSHHUG00000033527) #17 ENSHHUG00000033440 evx2 (ENSHHUG00000033438) #18 lnpa (ENSHHUG00000033418) #19 atp5mc3a (ENSHHUG00000033316) ##20 ATF2 (ENSHHUG00000033298) #21 ENSHHUG00000033295 ENSHHUG00000033292 ENSHHUG00000033284 ##22 CHRNA1 (ENSHHUG00000033273) #23 GPR155 (ENSHHUG00000033265) #25 scrn3 (ENSHHUG00000033250) #26 ENSHHUG00000033179 #27 sp9 (ENSHHUG00000033175) #28 ENSHHUG00000033170 ##29 cdk5r2b (ENSHHUG00000033164) fev (ENSHHUG00000033153) CRYBA2 (ENSHHUG00000033142) umps (ENSHHUG00000033133) ENSHHUG00000033131 KALRN (ENSHHUG00000032444) MYLK (ENSHHUG00000032376) FMNL2 (ENSHHUG00000031728) prpf40a (ENSHHUG00000031683) Salmoninae_a ANCESTRAL SPECIES ENSGT00950000182892.a.a.b.c.b #8 ENSGT00940000154808.a.a.o.b ENSGT00940000160027.c #12 ENSGT00940000157270.s #13 ENSGT00940000161503.a ENSGT00940000158266.h.a #15 ENSGT00940000161308.c #16 ENSGT00940000159938.a #17 ENSGT00940000161457 ENSGT00940000161025.m.a #18 ENSGT00390000001859.e.c #19 ENSGT00940000157981.a.a.b.a ENSGT00940000156582.m #21 ENSGT00940000161826.C.bb ENSGT01000000221798 ENSGT01030000234635.a.b.a.b.b.b.e.b.a ##22 ENSGT00940000156851.c.c #23 ENSGT00390000004153.c.f #25 ENSGT00390000013474.a.n #26 ENSGT00940000162304.f #28 ENSGT00390000000673.a.a.b ##29 ENSGT00940000155099.k.a.e #30 ENSGT00940000155436.w #31 ENSGT00940000161352.f.a #32 ENSGT00940000156075.a.a.h #33 ENSGT00940000164127.a.h ENSGT01030000234646.B.a.a.b.c #34 ENSGT00940000155353.a.a.a.g #35 ENSGT00940000160127.j.a #36 ENSGT00940000160029.d #37 ENSGT00390000007069.d Salmo ANCESTRAL SPECIES 15 ENSGT00940000156112.d.a #7 ENSGT00950000182892.a.a.b.c.b #8 ENSGT00940000154808.a.a.o.b ENSGT00940000160027.c #12 ENSGT00940000157270.s #13 ENSGT00940000161503.a.d ENSGT00940000158266.h.a #15 ENSGT00940000161308.c #16 ENSGT00940000159938.a #17 ENSGT00940000161457 ENSGT00940000161025.m.a #18 ENSGT00390000001859.e.c #19 ENSGT00940000157981.a.a.b.a ENSGT00940000156582.m #21 ENSGT00940000161826.C.bb ENSGT01030000234635.a.b.a.b.b.b.e.b.a ##22 ENSGT00940000156851.c.c #23 ENSGT00390000004153.c.f #25 ENSGT00390000013474.a.n #26 ENSGT00940000162304.f #28 ENSGT00390000000673.a.a.b ##29 ENSGT00940000155099.k.a.e #30 ENSGT00940000155436.w #31 ENSGT00940000163262.a.b ENSGT00940000156075.a.a.h #33 ENSGT00940000164127.a.h ENSGT01030000234646.B.a.a.b.c #34 ENSGT00940000155353.a.a.a.g #35 ENSGT00940000160127.j.a #36 ENSGT00940000160029.d #37 ENSGT00390000007069.d River trout MODERN SPECIES 16 nfe2l2a (ENSSTUG00000043132) #8 hnrnpa3 (ENSSTUG00000043022) ENSSTUG00000043006 hoxd3a (ENSSTUG00000042989) #12 hoxd4a (ENSSTUG00000042983) #13 hoxd9a (ENSSTUG00000042958) hoxd10a (ENSSTUG00000042936) #15 hoxd11a (ENSSTUG00000042899) #16 hoxd12a (ENSSTUG00000042891) #17 HOXD13 (ENSSTUG00000042876) evx2 (ENSSTUG00000042848) #18 lnpa (ENSSTUG00000042723) #19 ENSSTUG00000042498 ATF2 (ENSSTUG00000042386) #21 ENSSTUG00000041985 ENSSTUG00000041810 ##22 CHRNA1 (ENSSTUG00000041417) #23 GPR155 (ENSSTUG00000041338) #25 scrn3 (ENSSTUG00000041300) #26 sp9 (ENSSTUG00000041289) #28 OLA1 (ENSSTUG00000040949) ##29 sp3a (ENSSTUG00000040885) #30 cdca7a (ENSSTUG00000040869) #31 ENSSTUG00000040680 RAPGEF4 (ENSSTUG00000039779) #33 ENSSTUG00000039667 PDK1 (ENSSTUG00000039387) #34 ITGA6 (ENSSTUG00000038783) #35 DLX2 (ENSSTUG00000038709) #36 dlx1a (ENSSTUG00000038703) #37 hat1 (ENSSTUG00000038587) Atlantic salmon MODERN SPECIES 17 nfe2l2a (ENSSSAG00000064591) #8 hnrnpa3 (ENSSSAG00000064576) hoxd1aa (ENSSSAG00000064567) hoxd3a (ENSSSAG00000064556) #12 hoxd4a (ENSSSAG00000064551) #13 hoxd9a (ENSSSAG00000120867) hoxd10a (ENSSSAG00000064533) #15 hoxd11a (ENSSSAG00000064520) #16 hoxd12a (ENSSSAG00000064512) #17 HOXD13 (ENSSSAG00000064509) evx2 (ENSSSAG00000087182) #18 lnpa (ENSSSAG00000064476) #19 atp5g3 (ENSSSAG00000106339) ATF2 (ENSSSAG00000063467) #21 ENSSSAG00000063428 ENSSSAG00000063380 ##22 CHRNA1 (ENSSSAG00000085408) #23 GPR155 (ENSSSAG00000121343) #25 scrn3 (ENSSSAG00000062722) #26 sp9 (ENSSSAG00000103280) #28 OLA1 (ENSSSAG00000061664) ##29 sp3a (ENSSSAG00000061574) #30 ENSSSAG00000061450 RAPGEF4 (ENSSSAG00000059247) #33 ENSSSAG00000089794 ENSSSAG00000058783 PDK1 (ENSSSAG00000058131) #34 ITGA6 (ENSSSAG00000053761) #35 ENSSSAG00000116729 ENSSSAG00000116733 DLX2 (ENSSSAG00000053674) #36 Oncorhynchus ANCESTRAL SPECIES 3 ENSGT00950000182892.a.a.b.c.b #8 ENSGT00940000154808.a.a.o.b ENSGT00940000160027.c #12 ENSGT00940000157270.s #13 ENSGT00940000161503.a ENSGT00940000158266.h.a #15 ENSGT00940000161308.c #16 ENSGT00940000159938.a #17 ENSGT00940000161457 ENSGT00940000161025.m.a #18 ENSGT00390000001859.e.c #19 ENSGT00940000157981.a.a.b.a ENSGT00940000156582.m #21 ENSGT00940000161826.C.bb ENSGT01000000221798 ENSGT01030000234635.a.b.a.b.b.b.e.b.a ##22 ENSGT00940000156851.c.c #23 ENSGT00390000004153.c.f #25 ENSGT00390000013474.a.n #26 ENSGT00940000162304.f #28 ENSGT00390000000673.a.a.b ##29 ENSGT00940000155099.k.a.e #30 ENSGT00940000163262.a.b ENSGT00940000155436.w #31 ENSGT00940000161352.f.a #32 ENSGT00940000156075.a.a.h #33 ENSGT00940000164127.a.h ENSGT01030000234646.B.a.a.b.c #34 ENSGT00940000155353.a.a.a.g #35 ENSGT00940000160127.j.a #36 ENSGT00940000160029.d #37 Oncorhynchus_a ANCESTRAL SPECIES 8 ENSGT00940000156112.d.a #7 ENSGT00950000182892.a.a.b.c.b #8 ENSGT00940000154808.a.a.o.b ENSGT00940000160027.c #12 ENSGT00940000157270.s #13 ENSGT00940000161503.a ENSGT00940000158266.h.a #15 ENSGT00940000161308.c #16 ENSGT00940000159938.a #17 ENSGT00940000161457 ENSGT00940000161025.m.a #18 ENSGT00390000001859.e.c #19 ENSGT00940000157981.a.a.b.a ENSGT00940000156582.m #21 ENSGT01000000221798 ENSGT01030000234635.a.b.a.b.b.b.e.b.a ##22 ENSGT00940000156851.c.c #23 ENSGT00390000004153.c.f #25 ENSGT00390000013474.a.n #26 ENSGT00940000162304.f #28 ENSGT00390000000673.a.a.b ##29 ENSGT00940000155099.k.a.e #30 ENSGT00940000163262.a.b ENSGT00940000161352.f.a #32 ENSGT00940000156075.a.a.h #33 ENSGT00940000164127.a.h ENSGT01030000234646.B.a.a.b.c #34 ENSGT00940000155353.a.a.a.g #35 ENSGT00940000160127.j.a #36 ENSGT00940000160029.d #37 ENSGT00390000007069.d Coho salmon MODERN SPECIES 11 nfe2l2a (ENSOKIG00005028699) #8 hnrnpa3 (ENSOKIG00005028673) ENSOKIG00005028665 ENSOKIG00005028652 hoxd3a (ENSOKIG00005028636) #12 hoxd4a (ENSOKIG00005028622) #13 hoxd9a (ENSOKIG00005028604) hoxd10a (ENSOKIG00005028587) #15 hoxd11a (ENSOKIG00005028569) #16 hoxd12a (ENSOKIG00005028551) #17 HOXD13 (ENSOKIG00005028533) evx2 (ENSOKIG00005028522) #18 lnpa (ENSOKIG00005028423) #19 ENSOKIG00005028325 ATF2 (ENSOKIG00005028276) #21 ENSOKIG00005028187 ##22 CHRNA1 (ENSOKIG00005027970) #23 GPR155 (ENSOKIG00005027814) #25 scrn3 (ENSOKIG00005027515) #26 sp9 (ENSOKIG00005027476) #28 OLA1 (ENSOKIG00005027386) ##29 sp3a (ENSOKIG00005027358) #30 ENSOKIG00005027281 RAPGEF4 (ENSOKIG00005026626) #33 ENSOKIG00005026541 PDK1 (ENSOKIG00005025955) #34 ITGA6 (ENSOKIG00005025313) #35 DLX2 (ENSOKIG00005025168) #36 DLX1 (ENSOKIG00005025146) #37 hat1 (ENSOKIG00005025109) SLC25A12 (ENSOKIG00005024962) Chinook salmon MODERN SPECIES 22 nfe2l2a (ENSOTSG00005018824) #8 hnrnpa3 (ENSOTSG00005018821) ENSOTSG00005018816 hoxd3a (ENSOTSG00005018812) #12 hoxd4a (ENSOTSG00005018809) #13 hoxd9a (ENSOTSG00005018803) hoxd10a (ENSOTSG00005018801) #15 hoxd11a (ENSOTSG00005018797) #16 hoxd12a (ENSOTSG00005018793) #17 HOXD13 (ENSOTSG00005018789) evx2 (ENSOTSG00005018785) #18 lnpa (ENSOTSG00005018779) #19 ENSOTSG00005018698 ATF2 (ENSOTSG00005018692) #21 ENSOTSG00005018690 ENSOTSG00005018687 ##22 CHRNA1 (ENSOTSG00005018531) #23 GPR155 (ENSOTSG00005018442) #25 scrn3 (ENSOTSG00005018434) #26 sp9 (ENSOTSG00005018430) #28 OLA1 (ENSOTSG00005018327) ##29 sp3a (ENSOTSG00005018324) #30 MAP3K20 (ENSOTSG00005018322) #32 RAPGEF4 (ENSOTSG00005017777) #33 ENSOTSG00005017772 PDK1 (ENSOTSG00005017590) #34 ITGA6 (ENSOTSG00005013612) #35 DLX2 (ENSOTSG00005013598) #36 dlx1a (ENSOTSG00005013597) #37 hat1 (ENSOTSG00005013596) SLC25A12 (ENSOTSG00005013480) Rainbow trout MODERN SPECIES 21 hnrnpa3 (ENSOMYG00000024811) ENSOMYG00000024731 hoxd3a (ENSOMYG00000024709) #12 hoxd4a (ENSOMYG00000024685) #13 hoxd9a (ENSOMYG00000024667) hoxd10a (ENSOMYG00000058693) #15 hoxd11a (ENSOMYG00000024632) #16 hoxd12a (ENSOMYG00000024576) #17 HOXD13 (ENSOMYG00000024568) evx2 (ENSOMYG00000024554) #18 lnpa (ENSOMYG00000024451) #19 ENSOMYG00000024344 ATF2 (ENSOMYG00000024297) #21 ENSOMYG00000023622 ENSOMYG00000060012 ENSOMYG00000023400 ##22 CHRNA1 (ENSOMYG00000022578) #23 GPR155 (ENSOMYG00000022302) #25 scrn3 (ENSOMYG00000053819) #26 sp9 (ENSOMYG00000022238) #28 OLA1 (ENSOMYG00000022232) ##29 sp3a (ENSOMYG00000022218) #30 ENSOMYG00000053267 cdca7a (ENSOMYG00000022186) #31 MAP3K20 (ENSOMYG00000022111) #32 RAPGEF4 (ENSOMYG00000021112) #33 ENSOMYG00000020897 PDK1 (ENSOMYG00000020648) #34 ENSOMYG00000073157 ITGA6 (ENSOMYG00000017471) #35 ENSOMYG00000076373 Salmoninae ANCESTRAL SPECIES 6 ENSGT00940000155868.f.c ENSGT00940000177543.e.a.b ENSGT00730000111249.c ENSGT00940000155868.f.d ENSGT00390000001083 ENSGT00950000182808.a.a.a.a.a ENSGT00390000007644 ENSGT00940000163874 ENSGT00940000158318 ENSGT00950000182906.b.b.k ENSGT00390000016696 ENSGT00390000007467 ENSGT00910000144271.C.bb.b ENSGT00940000162722.d ENSGT00940000161651.e ENSGT01030000234635.a.b.a.b.b.b.e.b.b ##22 ENSGT00940000156851.c.d #23 ENSGT00390000004153.c.e #25 ENSGT00390000013474.a.m #26 ENSGT00730000111135 #27 ENSGT00940000162304.e #28 ENSGT00390000000673.a.a.a.b ##29 ENSGT00940000155099.k.a.f #30 ENSGT00940000155436.x #31 ENSGT00940000163262.a.a ENSGT00940000156075.a.a.g #33 ENSGT00940000164127.a.g ENSGT01030000234646.B.a.a.b.d #34 ENSGT00940000155353.a.a.a.h #35 ENSGT00940000160127.j.b #36 ENSGT00940000160029.c #37 Salmoninae_a ANCESTRAL SPECIES ENSGT00940000157314.B ENSGT00940000158231.l.c ENSGT00390000016499.e ENSGT00940000177543.e.b ENSGT00940000177543.e.a.b ENSGT00730000111249.c ENSGT00940000155868.f.d ENSGT00390000001083 ENSGT00950000182808.a.a.a.a.a ENSGT00390000007644 ENSGT00940000163874.c ENSGT00940000158318 ENSGT00950000182906.b.b.k ENSGT00390000016696 ENSGT00390000007467 ENSGT01030000234635.a.b.a.b.b.b.e.b.b ##22 ENSGT00940000156851.c.d #23 ENSGT00390000004153.c.e #25 ENSGT00390000013474.a.m #26 ENSGT00730000111135 #27 ENSGT00940000162304.e #28 ENSGT00390000000673.a.a.a.b ##29 ENSGT00940000155099.k.a.f #30 ENSGT00940000155436.x #31 ENSGT00940000163262.a.a ENSGT00940000156075.a.a.g #33 ENSGT00940000164127.a.g ENSGT01030000234646.B.a.a.b.d #34 ENSGT00940000155353.a.a.a.h #35 ENSGT00940000160127.j.b #36 ENSGT00940000160029.c #37 Salmo ANCESTRAL SPECIES 10 ENSGT00940000157314.B ENSGT00940000158231.l.c ENSGT00390000016499.e ENSGT00940000177543.e.b ENSGT00940000177543.e.a.b ENSGT00730000111249.c ENSGT00940000155868.f.d ENSGT00390000001083 ENSGT00950000182808.a.a.a.a.a ENSGT00390000007644 ENSGT00940000163874.c ENSGT00940000158318 ENSGT00950000182906.b.b.k ENSGT00390000016696 ENSGT00390000007467.r ENSGT01030000234635.a.b.a.b.b.b.e.b.b ##22 ENSGT00940000156851.c.d #23 ENSGT00390000004153.c.e #25 ENSGT00390000013474.a.m #26 ENSGT00730000111135 #27 ENSGT00940000162304.e #28 ENSGT00390000000673.a.a.a.b ##29 ENSGT00940000155099.k.a.f #30 ENSGT00940000155436.x #31 ENSGT00940000163262.a.a ENSGT00940000156075.a.a.g #33 ENSGT00940000164127.a.g ENSGT01030000234646.B.a.a.b.d #34 ENSGT00940000155353.a.a.a.h #35 ENSGT00940000160127.j.b #36 ENSGT00940000160029.c #37 Atlantic salmon MODERN SPECIES 13 ENSSSAG00000074738 ENSSSAG00000074742 ENSSSAG00000074744 ENSSSAG00000104882 ENSSSAG00000103096 ENSSSAG00000109671 ARGLU1 (ENSSSAG00000104605) efnb2a (ENSSSAG00000111771) gtpbp8 (ENSSSAG00000074736) slc10a2 (ENSSSAG00000074732) nepro (ENSSSAG00000074722) poglut2 (ENSSSAG00000074689) stxbp5l (ENSSSAG00000072675) gtf2e1 (ENSSSAG00000072598) rabl3 (ENSSSAG00000072566) ENSSSAG00000072542 ##22 CHRNA1 (ENSSSAG00000071774) #23 GPR155 (ENSSSAG00000120061) #25 scrn3 (ENSSSAG00000071689) #26 CIR1 (ENSSSAG00000108398) #27 sp9 (ENSSSAG00000062710) #28 OLA1 (ENSSSAG00000071631) ##29 sp3a (ENSSSAG00000103117) #30 cdca7a (ENSSSAG00000071616) #31 ENSSSAG00000070783 RAPGEF4 (ENSSSAG00000070225) #33 ENSSSAG00000070061 PDK1 (ENSSSAG00000070045) #34 ENSSSAG00000096355 ITGA6 (ENSSSAG00000069787) #35 DLX2 (ENSSSAG00000110538) #36 River trout MODERN SPECIES 12 ENSSTUG00000011365 C21orf62 (ENSSTUG00000011378) ENSSTUG00000011384 ENSSTUG00000011387 ENSSTUG00000011399 ARGLU1 (ENSSTUG00000011486) efnb2a (ENSSTUG00000011493) gtpbp8 (ENSSTUG00000011512) slc10a2 (ENSSTUG00000011521) nepro (ENSSTUG00000011534) ENSSTUG00000011540 poglut2 (ENSSTUG00000011557) stxbp5l (ENSSTUG00000011630) gtf2e1 (ENSSTUG00000011697) rabl3 (ENSSTUG00000011710) ENSSTUG00000011731 ##22 CHRNA1 (ENSSTUG00000011769) #23 GPR155 (ENSSTUG00000012269) #25 scrn3 (ENSSTUG00000012328) #26 CIR1 (ENSSTUG00000012344) #27 sp9 (ENSSTUG00000012385) #28 OLA1 (ENSSTUG00000012396) ##29 sp3a (ENSSTUG00000012436) #30 cdca7a (ENSSTUG00000012450) #31 ENSSTUG00000012479 RAPGEF4 (ENSSTUG00000012579) #33 ENSSTUG00000013136 PDK1 (ENSSTUG00000013250) #34 ITGA6 (ENSSTUG00000013418) #35 DLX2 (ENSSTUG00000014349) #36 dlx1a (ENSSTUG00000014357) #37 Oncorhynchus ANCESTRAL SPECIES 13 ENSGT00940000157314.B ENSGT00940000158231.l.c ENSGT00390000016499.e ENSGT00940000177543.e.b ENSGT00940000177543.e.a.b ENSGT00730000111249.c ENSGT00940000155868.f.d ENSGT00390000001083 ENSGT00950000182808.a.a.a.a.a ENSGT00390000007644 ENSGT00940000163874.c ENSGT00940000158318 ENSGT00950000182906.b.b.k ENSGT00390000016696 ENSGT00390000007467 ENSGT01030000234635.a.b.a.b.b.b.e.b.b ##22 ENSGT00940000156851.c.d #23 ENSGT00390000004153.c.e #25 ENSGT00390000013474.a.m #26 ENSGT00730000111135 #27 ENSGT00940000162304.e #28 ENSGT00390000000673.a.a.a.b ##29 ENSGT00940000155099.k.a.f #30 ENSGT00940000155436.x #31 ENSGT00940000163262.a.a ENSGT00940000156075.a.a.g #33 ENSGT00940000164127.a.g ENSGT01030000234646.B.a.a.b.d #34 ENSGT00940000155353.a.a.a.h #35 ENSGT00940000160127.j.b #36 ENSGT00940000160029.c #37 Oncorhynchus_a ANCESTRAL SPECIES 11 ENSGT00940000157314.B ENSGT00940000158231.l.c ENSGT00390000016499.e ENSGT00940000177543.e.b ENSGT00940000177543.e.a.b ENSGT00730000111249.c ENSGT00940000155868.f.d ENSGT00390000001083 ENSGT00950000182808.a.a.a.a.a ENSGT00390000007644 ENSGT00940000163874.c ENSGT00940000158318 ENSGT00950000182906.b.b.k ENSGT00390000016696 ENSGT00390000007467 ENSGT01030000234635.a.b.a.b.b.b.e.b.b ##22 ENSGT00940000156851.c.d #23 ENSGT00390000004153.c.e #25 ENSGT00390000013474.a.m #26 ENSGT00730000111135 #27 ENSGT00940000162304.e #28 ENSGT00390000000673.a.a.a.b ##29 ENSGT00940000155099.k.a.f #30 ENSGT00940000155436.x #31 ENSGT00940000163262.a.a ENSGT00940000156075.a.a.g #33 ENSGT00940000164127.a.g ENSGT01030000234646.B.a.a.b.d #34 ENSGT00940000155353.a.a.a.h #35 ENSGT00940000160127.j.b #36 ENSGT00940000160029.c #37 Coho salmon MODERN SPECIES 18 ENSOKIG00005015628 ENSOKIG00005015617 ENSOKIG00005015594 ENSOKIG00005015588 ARGLU1 (ENSOKIG00005015570) efnb2a (ENSOKIG00005015531) ENSOKIG00005015523 gtpbp8 (ENSOKIG00005015511) slc10a2 (ENSOKIG00005015494) nepro (ENSOKIG00005015461) ENSOKIG00005015438 poglut2 (ENSOKIG00005015408) stxbp5l (ENSOKIG00005014691) gtf2e1 (ENSOKIG00005014546) rabl3 (ENSOKIG00005014507) ENSOKIG00005014492 ##22 CHRNA1 (ENSOKIG00005014270) #23 GPR155 (ENSOKIG00005014095) #25 scrn3 (ENSOKIG00005014033) #26 CIR1 (ENSOKIG00005014014) #27 sp9 (ENSOKIG00005014003) #28 ENSOKIG00005013997 ##29 sp3a (ENSOKIG00005013978) #30 cdca7a (ENSOKIG00005013961) #31 ENSOKIG00005049635 RAPGEF4 (ENSOKIG00005049266) #33 ENSOKIG00005049161 ITGA6 (ENSOKIG00005048913) #35 DLX2 (ENSOKIG00005048804) #36 dlx1a (ENSOKIG00005048797) #37 hat1 (ENSOKIG00005048791) Chinook salmon MODERN SPECIES 18 ENSOTSG00005047878 ENSOTSG00005047877 ENSOTSG00005047876 ENSOTSG00005047875 arglu1a (ENSOTSG00005047873) efnb2a (ENSOTSG00005047872) ENSOTSG00005047871 ENSOTSG00005047870 gtpbp8 (ENSOTSG00005047868) slc10a2 (ENSOTSG00005047865) nepro (ENSOTSG00005047863) poglut2 (ENSOTSG00005047860) stxbp5l (ENSOTSG00005047855) gtf2e1 (ENSOTSG00005047854) rabl3 (ENSOTSG00005047853) ENSOTSG00005047852 ##22 CHRNA1 (ENSOTSG00005047846) #23 GPR155 (ENSOTSG00005047845) #25 scrn3 (ENSOTSG00005047844) #26 sp9 (ENSOTSG00005047843) #28 ENSOTSG00005047842 CIR1 (ENSOTSG00005047841) #27 sp3a (ENSOTSG00005047840) #30 cdca7a (ENSOTSG00005047839) #31 ENSOTSG00005047838 RAPGEF4 (ENSOTSG00005047820) #33 ENSOTSG00005047818 PDK1 (ENSOTSG00005047817) #34 ITGA6 (ENSOTSG00005047812) #35 DLX2 (ENSOTSG00005047810) #36 dlx1a (ENSOTSG00005047809) #37 Rainbow trout MODERN SPECIES 14 ENSOMYG00000048979 ENSOMYG00000047771 ENSOMYG00000047773 ENSOMYG00000047774 ARGLU1 (ENSOMYG00000047777) efnb2a (ENSOMYG00000047778) gtpbp8 (ENSOMYG00000047779) slc10a2 (ENSOMYG00000047780) nepro (ENSOMYG00000052566) ENSOMYG00000047781 poglut2 (ENSOMYG00000047782) stxbp5l (ENSOMYG00000047791) ENSOMYG00000071401 gtf2e1 (ENSOMYG00000047805) RABL3 (ENSOMYG00000047806) ENSOMYG00000009674 ##22 CHRNA1 (ENSOMYG00000009765) #23 GPR155 (ENSOMYG00000009883) #25 scrn3 (ENSOMYG00000009924) #26 CIR1 (ENSOMYG00000009976) #27 sp9 (ENSOMYG00000009998) #28 OLA1 (ENSOMYG00000010011) ##29 ENSOMYG00000061276 sp3a (ENSOMYG00000010098) #30 cdca7a (ENSOMYG00000010126) #31 ENSOMYG00000010273 RAPGEF4 (ENSOMYG00000010612) #33 ENSOMYG00000011497 ENSOMYG00000011587 ITGA6 (ENSOMYG00000011949) #35 DLX2 (ENSOMYG00000017658) #36 Huchen MODERN SPECIES 34 RASA1 (ENSHHUG00000009231) tmem161b (ENSHHUG00000009522) mef2cb (ENSHHUG00000009562) ENSHHUG00000009734 olfm1a (ENSHHUG00000009845) gtpbp8 (ENSHHUG00000009854) slc10a2 (ENSHHUG00000009859) nepro (ENSHHUG00000009931) poglut2 (ENSHHUG00000009887) stxbp5l (ENSHHUG00000009987) ENSHHUG00000010379 gtf2e1 (ENSHHUG00000010389) rabl3 (ENSHHUG00000010401) ENSHHUG00000010426 ##22 CHRNA1 (ENSHHUG00000010441) #23 GPR155 (ENSHHUG00000010542) #25 scrn3 (ENSHHUG00000010683) #26 CIR1 (ENSHHUG00000010692) #27 sp9 (ENSHHUG00000010715) #28 ENSHHUG00000010718 ##29 Northern pike MODERN SPECIES 15 nfe2l2a (ENSELUG00000023096) #8 hnrnpa3 (ENSELUG00000023080) ENSELUG00000023012 hoxd4a (ENSELUG00000024879) #13 hoxd3a (ENSELUG00000023003) #12 HXD9A (ENSELUG00000022987) hoxd10a (ENSELUG00000022940) #15 hoxd11a (ENSELUG00000022931) #16 hoxd12a (ENSELUG00000022918) #17 HOXD13 (ENSELUG00000022904) evx2 (ENSELUG00000001336) #18 lnpa (ENSELUG00000022797) #19 ENSELUG00000021556 ATF2 (ENSELUG00000000967) #21 ENSELUG00000034644 ENSELUG00000027167 ##22 CHRNA1 (ENSELUG00000022630) #23 GPR155 (ENSELUG00000022612) #25 scrn3 (ENSELUG00000022585) #26 CIR1 (ENSELUG00000022576) #27 sp9 (ENSELUG00000022563) #28 OLA1 (ENSELUG00000022548) ##29 sp3a (ENSELUG00000022482) #30 cdca7a (ENSELUG00000022459) #31 ENSELUG00000022432 RAPGEF4 (ENSELUG00000022308) #33 ENSELUG00000022118 PDK1 (ENSELUG00000021984) #34 ITGA6 (ENSELUG00000021960) #35 DLX2 (ENSELUG00000021798) #36 dlx1a (ENSELUG00000021775) #37 Protacanthopterygii ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.b.f ##22 Salmoninae ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.b.f ##22 Salmoninae_a ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.b.f ##22 Salmo ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.b.f ##22 Atlantic salmon MODERN SPECIES 8 CACNA2D1 (ENSSSAG00000040218) ENSSSAG00000083616 sema3e (ENSSSAG00000093380) sema3ab (ENSSSAG00000088799) zc3hf (ENSSSAG00000056593) ENSSSAG00000096560 ENSSSAG00000104947 ENSSSAG00000099826 ENSSSAG00000094195 ENSSSAG00000113645 cycsb (ENSSSAG00000007248) ENSSSAG00000007251 #8 mtx2 (ENSSSAG00000007259) #10 lnpk (ENSSSAG00000007280) #19 AT5G3 (ENSSSAG00000007320) ENSSSAG00000055202 ##22 ENSSSAG00000007345 ##22 ENSSSAG00000007417 ENSSSAG00000007488 ENSSSAG00000108732 ENSSSAG00000107573 ENSSSAG00000101890 ENSSSAG00000025750 ENSSSAG00000026988 ENSSSAG00000027337 ankrd10a (ENSSSAG00000111913) ENSSSAG00000028027 irs2a (ENSSSAG00000038669) lig4 (ENSSSAG00000038712) fam155a (ENSSSAG00000038793) ENSSSAG00000085820 Spotted gar MODERN SPECIES 650 ENSLOCG00000007019 ENSLOCG00000007028 hoxd3a (ENSLOCG00000007043) #12 hoxd4a (ENSLOCG00000007074) #13 ENSLOCG00000007085 ENSLOCG00000007106 hoxd10a (ENSLOCG00000007118) #15 hoxd11a (ENSLOCG00000007133) #16 hoxd12a (ENSLOCG00000007146) #17 HOXD13 (ENSLOCG00000007161) evx2 (ENSLOCG00000007179) #18 lnpk (ENSLOCG00000007190) #19 ENSLOCG00000007211 ATF2 (ENSLOCG00000007222) #21 ENSLOCG00000007244 CHN1 (ENSLOCG00000007269) ##22 chrna1 (ENSLOCG00000007282) #23 wipf1a (ENSLOCG00000007291) #24 GPR155 (ENSLOCG00000007323) #25 scrn3 (ENSLOCG00000007349) #26 CIR1 (ENSLOCG00000007371) #27 sp9 (ENSLOCG00000007391) #28 ola1 (ENSLOCG00000007399) #29 sp3a (ENSLOCG00000007414) #30 ENSLOCG00000007428 cdca7a (ENSLOCG00000007465) #31 ENSLOCG00000007479 RAPGEF4 (ENSLOCG00000007495) #33 ENSLOCG00000007524 PDK1 (ENSLOCG00000007542) #34 itga6b (ENSLOCG00000007555) #35